lowQualScore : 9999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 1111111
lowQualScore : 22 44 2 6666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 2222 0 5555555 4 111 333 1 1 1111111 2 5555 7777 2 3 1 0 3 333 1
lowQualScore : .. .. . ........................................................................................... .... . ....... . ... ... . . ....... . .... .... . . . . . ... .
lowQualScore : 88 66 3 9999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 4444 1 6666666 5 999 111 0 2 1111111 5 7777 8888 2 7 6 2 4 777 3
consensus : TAGTCTGG--ATCATCCCGAC-GT-TT---G-------G-----T--------G---------T-------A-----C-G-A---C-----------C-G---T--C-------G---T----ACA-------CACA---A---AC-GTCGGGATGATC-C-------TG-TG----GA----GAGT-CGNCG-TATACACAA---ACG-TCGGGATGATCCAGAC
Reference ( gi|3 ) : TAGTCTGG--ATCATCCCGAC-AT-TT---A-------A-----T--------G---------T-------A-----C-G-A---C-----------C-G---T--C-------G---T----ACA-------CATA---A---AC-GTCGGGATGATC-C-------TA-TG----GA----GAGT-CGTCG-TACACATAA---ACG-TCGGGATGATCCAGAC
gi|25 : TAGTCTGG--ATCATCC-GAC-AT-TT---T-------A-----T--------G---------T-------A-----C-G-A---C-----------C-G---T--C-------G---T----ACA-------CATA---A---AC-GTCGGGATGATC-C-------
gi|18 : TAGTCTGG--ATCATCTCGAC-GT-TT-----------G-----T--------G---------T-------ATACACC-G-A---C-----------T-C---T--C-----------C----ACA-------CACA---A---AC-GTCGGGGTGACC-C-------
gi|8 : TAGTCTGG--ATCATCCCAAT-GT-TT---GT------G-----T--------A---------T-------A-----C-G-----C-----------C-GACTT--C-------C---C----ATAGAGTGTTCACA---A---AC-TTCGGGTTGATa
gi|23 : atctgtTAGTCTGG--ATAATCCCGAT-A--TT---A-------A-----T--------G---------T-------A-----C-A-----------------T-G---TA-T-------G---T----ATA-------C--A---A---AC-GTCGGGATAAT
gi|4 : atctgcTAGTTTTG--ATCATCCCAAC-AT-TT--------------------------G---------T-------A----------------------------------------------T----ATA-------CATG---T---AC-ACCAAG----TC-C-------AC-T------------AGT-CAGCG-TGTACAAAA---ATG-TCGGAAGGATCCAGACa
gi|1 : TAGTCTGGG-ATAATCCCGAT-AT-T----A-------A-----T------------------T-------A-----C-A-----------------T-G---TA-T-------G---T----ATA--------ACA---A---AC-GTCGGGATAAT
gi|1 : gcaaacaaggaaatttccaaatgatcactgtaagctaatctggccTAATCTGGCCATTATCCCGAC-GT-TT---G-------T-----T--------A---------T-------A----------------------------------C-------A---T----ACA-------TGTAATTA---AT-ATCGGGATTATC-C-------CA-acctat
gi|41 : gcaaacaaggaaatttccaaatgatcactgtaagcTAGTCTGG--ATCATTCCGAT-GT-TT---AC------A-----A--------A---------T-------A-----C-G-----C-----------C-G---gactaacctat
gi|27 : gagtAGTCTGG--ATCATCCCGAC-GT-TT---G-------------T--------G---------G-------A-----G-A-G---T-----------T-G---T--C-------G---T----ACA-------CATA---A---AC-GTCGGGATGATC-C-------gt
gi|7 : AGTCTGG--ATCATCCCGAC-GT-TT---A-------------T--------G---------T-------ATACGCC-G-A---C-----------T-C---T--CCACAAACG---T----ATA-------CACA---A---AC-GTCGGGATGATC-C-------a
gi|11 : gtctAGTCTGG--ATCATCCCGAC-GT-TT-----------G-----T--------G---------T-------ATACGCC-G-A---C-----------CTG---T----------G---TATAAACA-------CACA---A---AC-GTCGGAATGATC-C-------
gi|5 : AGTCTGG--ATCATCCCGAC-GC-TT---GTGT----A-----T--------A---------T-------G-----C-C-A---CAAGTGGAGAGTC-G---G--C-------G---T----ATA-------CACA---A---AC-GTCGGGATTATC-C-------aga
gi|14 : gtctAGTCTGG--ATCATCCCGAC-GT-TT-----------G-----T--------G---------TTTGTGGAG-----A-G-A---C-----------A-G------C-------G---T----ATA-------CACA---A---AC-GTCTGGATGATT-C-------
gi|28 : gtctAGTCTGG--ATCATCACGAC-GT-TG---A-------G--------------------------------A-----C-G-AGT-C-----------C-G------C-------G---T----ATA-------CAAA---C---AC-GTCGGGATTATC-C-------
gi|15 : AGTCTGG--AACATCTCGAC-GT-T----A-------A-----TTATGTTTTG---------T-------A-------G-AGAGT-----------C-G---A--C-------G---T----ATA-------CACA---A---AC-GTAGGGATGAag
gi|7 : GTCTGG--ATCATCCCGAC-GT-TT---G-------------T--------G---------T-------A-----T------------------------------------------------------------------AC-GTT------------------TG-TG----GA----GAGT-CGGCG-TATACATAA---ACG-TCGGGATGATCCAGACc
gi|5 : GTCTGG--ATAATCCCGAC-GT-TT-----------G-----T--------G---------T-------ATACGCC-G-A---CTCTCCACT---T-G---TGGC-------A---T----ATA-------CACA---A---GC-GTCGGGATGATC-C-------t
gi|9 : GTCTGG--ATCATACCGAC-GT-TT---GTGTAT--A-----T--------GCCGATTCTCT-------A-----C-A-A---A-----------C-G---TGGC-------G---T----ATA-------CACA---A---AC-GTCGGGATGATC-C-------agact
gi|14 : GTCTGA--ATCATCCAGAC-GT-TT---GT------G-----T--------A---------T-------A-----C-G-----C-----------T-G---T--CTCTCC--A---C----AAA-------CACA---A---AC-GTCGGGATGATC-C-------
gi|22 : GTCTGA--TTTATCCCGACCGT-TT---ATGAGT--A-----T--------T---------G-------A-----G-G-A---C--------------------------------T----ACA-------CATA---A---AC-GTCGGGATGATC-C-------agact
gi|4 : GTCTGG--ATCCTTCCGAC-AT-TT----------------------------------------------------------------------------T--T-------G---T----ACA-------C------------------GCTGA---C-------TAGTG----GACTTGGTGTACAT-G-TATATACAA---ATG-TTGGGATGATCAAAACaa
gi|34 : GCCTTG--ATCATCAAAAC-GT-TT--------------------------------------------------C-G-A---CT----------C-G---TT-C-------G---C----AAA-------GACA---A---AC-GTCTGGATGATC-ta
gi|31 : GTCTTG--ATCATCAAAAC-GC-TT--------------------------------------------------C-G-A---CT----------C-A---TT-C-------G---C----AAA-------GACA---A---AC-GTCTGGATGATC-
gi|11 : tctcTCTGG--ATCATTCCGAC-GT-TT---GTGTGTTTA-----T--------A---------C-------A-----CAG-G---T-----------C-G---G--C-------G---T----ATA-------CACA---A---AC-GTCGGGATGATC-C-------
gi|8 : agtctTCTGT--ATCAACCCGAA-GT-TTGTGA-------ACACTCT--------A---------T-------G-----G-G-AAG-T-----------C-G---G--C-------G---T----ATA-------CACA---A---AC-ATTGGGATGATC-C-------
gi|23 : aTCTGC--ATTATCCCGAC-GT-T------------------T--------G---------T-------A-----T-A-----------------C-A---TA-C-------A---T----GTA-------CATT---A---AT-ATCGGGATTATC-C-------agacta
gi|26 : aCTGG--ATCATCCCGAC-ATATT---AT------A-----T--------G---------T-------A-----C-G-A---C-----------C-G---T--C-------G---T----ACA-------CATA---A---AC-GTCGGGATGATC-agactaa
gi|28 : CTGG--ATAATCCCGAC-GTGTT---T-------G-----T--------A---------T-------A-----C-G-----------------C-GGACT--C-------G---T--------------C-TC---A---AC-GTCGTGATGATC-C-------tc
gi|27 : agtctTGG--ATCATCCCGAC-GT-TT---AT------G-----T--------G---------T-------A-----C-G-A---C-----------A-A---C--T-------C---T----CCA-------CA-----A---AC-GTCGGGATGATC-C-------
gi|18 : agtctTGG--GTCACCCCGAC-GT-TT---G-------------T--------G---------T-------G-----T-GGA---G-----------A-G---T--C-------GGTGT----ATA-------CACA---A---AC-GTCGAGATGATC-C-------
gi|22 : tagtctTGG--ATCATCCCGAC-GT-TT---AT------G-----T--------G---------T-------A-------G-T---C-----------C-----T--CA------A---T----ACT-------CATA---A---ACGGTCGGGATAA
gi|25 : gtctgatGG--ATCATCCCGAC-GT-TT---AT------G-----T--------G---------T-------A-----C-G-A---C-----------G-G---T--C-------G---T----ACA-------TA-A---A---AT-GTC-GGATGATC-C-------a
gi|9 : GG--ATCATCCCGAC-GT-TT---G-------------T--------G---------T-------A----------------------------------------------T----ACG-------CC---------AC-GTT------------------TG-TA----GA----GAAT-CGGCA-TATACACAA---ACG-TCGGTATGATCCAGACagacta
gi|26 : G--ATCATCCCGAC-GT-TT---AT------G-----T--------G---------T-------A-----C-G-A---C-----------G-G---T--C-------G---T----ACA-------TATA---AT--AT-GTCGGGATGATC-C-------
gi|15 : TCATCCCTAC-GT-TT---G-------------T--------G---------T-------ATACGTC-G-A---C-----------T-C---T--C-----------T----ACAAAA----CATA---ATTAAC-GTCGAGATGTTC-C-------agtc
gi|43 : agtct-----------C-G---T--C-------G---T----ACA-------CATA---A---AC-GTCGGGc
gi|42 : tatggagagt-----------C-G---T--C-------G---T----ACA-------CATA---A---AC-GTCGGGA
gi|25 : atggagagt-GTCTGGATCATC-CGACATTTTA-TG----TA----CGAC-CGTCG-TACACATAA---ACG-TCGGGATGATCC
gi|27 : -GTCTGGATCATC-CCGACGTTTG-TG----GA----GAGT-TGTCG-TACACATAA---ACG-TCGGGATGATCCAta
gi|28 : a-GTCTGGATCATCAC-------GA-CGTTGAGAC---GAGT-CCGCG-TATACAAAC---ACG-TCGGGATTATCCAG
gi|22 : aGGATCATC-CCGACGTTTA-TG----TG----TAGT-CCTCAATACTCATAA---ACGGTCGGGATAAATCAGAC
gi|8 : -C-------TA-TG----GG----AAGT-CGGCG-TATACACAA---ACA-TTGGGATGATCCAGACaa
gi|18 : atctgtatcaacccgaagtttgtgaacact-------TG-TG----GA----GAGT-CGGTG-TATACACAA---ACG-TCGAGATGATCCAGACta
gi|43 : ta-------TA-TG----GA----GAGT-CGTCG-TACACATAA---ACG-TCGGGcacaaacgtcggggtgaccca
gi|14 : -------TG-TG----GA----GAGA-CAGCG-TATACACAA---ACG-TCTGGATGATTCAGAC
gi|15 : -------TG-TA----GA----GAGT-CGACG-TATACACAA---ACG-TAGGGATGAaacacaaacgtcgggatgatccagact
gi|42 : agtctggaacatctcgacgttaattatgtttA-TG----GA----GAGT-CGTCG-TACACATAA---ACG-TCGGGAc
gi|5 : -TG----GA----GAGT-CGGCG-TATACACAA---ACG-TCGGGATTATCCAGAC
gi|41 : ----GAGT-CGGCG-TATTTGTAA---ACA-TCGGAATGATCCAGACcttgtggcatatacacaagcgtcgggatgatccagact
gi|11 : GT-CGGCG-TATACACAA---ACG-TCGGGATGATCCAGACtagt
gi|26 : a-CGTCG-TACACATAA---ACG-TCGGGATGATCctgtgtataaacacacaaacgtcggaatgatccaga
gi|25 : GTCG-TACATA-AA---ATG-TCGG-ATGATCCAGACgtcgtacatataatatgtcgggatgatccagtc
gi|26 : ggatcatcccgacgtttatgtgtacgacgGTCG-TACATATAAT--ATG-TCGGGATGATCCAGta
gi|31 : gatcatcccgacgtttatgtgtacgacgTCG-CAAAGACAA---ACG-TCTGGATGATCGAGAtc
gi|7 : CG-TATACACAA---ACG-TCGGGATGATCCAGACatgagtcgaagcgttttgatgatcaagac
gi|9 : CG-TATACACAA---ACG-TCGGGATGATCCtttgtggagagtcggcgtatacataaacgtcgggatgatccagact
gi|23 : G-TATACA--A---ACG-TCGGGATAATGCAGAccacgtttgtagagaatcggcatatacacaaacgtcggtatgatccagac
gi|22 : a-TACACATAA---ACG-TCGGGATGATCCAatacatgtacattaatatcgggattatccagactaa
gi|18 : gtctgatttatcccgaccgtttatgagtattgaggacACACACAA---ACG-TCGGGGTGACCCAa
gi|14 : tagtctggatcatctcgacgtttgtgtatacaccgactctccACACAA---ACG-TCGGGATGATCCAGAC
gi|15 : gtctgaatcatccagacgtttgtgtatacgctgtctctccacaaACATAATTAACG-TCGAGATGTTCCAGACt
gi|27 : aCACAA---ACG-TCGGGATGATCCAGACtttgtagagagtcgacgtatacacaaacgtagggatgac
gi|28 : aA---ACG-TCGTGATGATCCAGACgagagttgtcgtacacataaacgtcgggatgatcca
22 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|2 ): AGTTAGAAATTGGTAGTACATAATCATGCATCTATTCCTCAATAATCTTTCATTTAACTGTCAGCATTTCAAAGCATCCAAATAACAGAAAATGCGTTTATGAATATA
Unaligned ( gi|6 ): AGTCATCTGATCATCCAGACGTGTTGTCTTATTCAAAAAACTATCCCGAATTGAGTGCCGGAGCGTGAATTTATCAA
Unaligned ( gi|10 ): TCTCGATCATTGCCCAGACGTTTGGTTCCTTATCAGACGATACTGAGTTGAAGCGCTTTTGATGTATCCAAGAC
Unaligned ( gi|12 ): TAAGCTATATTCTTGCGTCAATACATTCTTCCATTATGATTAACATTCAATACCGGAAATGCGTCAGTATAC
Unaligned ( gi|13 ): TCTCGATCATCCAGACGTTTGTCTTATCAGACGAACTTCGCGAATGAGTCGAAGCGTTTTGATGATCAAG
Unaligned ( gi|16 ): CTCGATCATCCAGAAGTTTGTCTTATCATACGAACGAATGAGTCGAAGCGTTTTTGATGATCAAGA
Unaligned ( gi|17 ): TCTCGATCATCCAGACGGTTGTCTTTATACAGAACAAACAAGTCAAAGAGTCTTATGATTCAAGAC
Unaligned ( gi|19 ): CTCGATCATCCAGACGTTTTTTCTTATCCAGACTAACCAGGAGTCGAAGCTTTGGATGATCAAG
Unaligned ( gi|20 ): GATCATCCAGACGTTTGTCTTATCAAACTTCGCGAATGAGTCGAAGCGTTTTGATGATCAAGAC
Unaligned ( gi|21 ): TCGATCATCCAGACGTTGTCTTCATCAGACGCACACGAGTTGAAGCGTTTTGATGATCAAGAC
Unaligned ( gi|24 ): ATCATCCAGACGTTTGTCTTTATCAGACACAAACAAGTCAAAGCGTCTTGATGATCAAGAC
Unaligned ( gi|29 ): CGATCATCCAGACGTTTGTCATATCTGACGAATAAGTCGAAGCGTTTTGATGATCAAGAC
Unaligned ( gi|30 ): CAATCACCCAGACGCTTGGCTTTACCTCGAAGAAGTCGAGCCGTCTTGATGATGAAGTCT
Unaligned ( gi|32 ): CGTCCAGACGTTTGTCTTTATCAGACGAACAAGTCGAAGCGTTTTGATGATCAAGAC
Unaligned ( gi|33 ): CCAGACGTTTGTTATCAGCTAGACGAACACTCGCAAAGCGTTTTGATGATCAAGAC
Unaligned ( gi|35 ): CTCGATCATCCAGACGTTTGTCTTATCAATGAGCGAGCGTTTTGATGATCAAGAC
Unaligned ( gi|36 ): GTCTCGGTCATCCAGAGGCTTCTCTAACAAGTCCTGGCATCTGGGTGATCAAGAC
Unaligned ( gi|37 ): GTCTTTATCCGATGAACAAGTCGAAGCGTCTTGATGATCAAGACT
Unaligned ( gi|38 ): TTTGAATATTATTTACCGCCATGCAATACCTATTTCAATATTTTT
Unaligned ( gi|39 ): AGACGCTTCGCGAAATGAGTCGAAGCGTTTTGATGATCAAGA
Unaligned ( gi|40 ): TCATTTGTGGAGTATACACAAGCGTATGGATGATCAAGACTA
Unaligned ( gi|44 ): TGAGTTGAAGCGTTTTGATGATCAAGACT
Alignments
lowQualScore : 77777777777777777777777777777777777777777777777777
lowQualScore : 22 1 1 1 44444 55555555555555555555555555555555555555555555555555 0 666666666 333 4 2 2 1
lowQualScore : .. . . . ..... .................................................. . ......... ... . . . .
lowQualScore : 66 9 9 9 88888 88888888888888888888888888888888888888888888888888 5 333333333 333 3 2 2 0
consensus : TAGTCTGG--ATCATCCCGAC-G-T-T-----TGT----G--T--GT--A---CGA---C-----C-G----T-C--GT----ACA-------C-ACA---AACGTCGGGATGATC-CTGTGGAGAGTCGGCGTATACACAAACGTCGGGATGATCCAGAC
Reference ( family-1092 ) : TAGTCTGG--ATCATCCCGAC-G-T-T-----TG-----G--T--GT--A---CGA---C-----C-G----T-C--GT----ACA-------C-ACA---AACGTCGGGATGATC-CTGTGGAGAGTCGNCGTATACACAAACGTCGGGATGATCCAGAC
gi|1 : TAATCTGGCCATTATCCCGAC-G-T-T-----TG-----T--T--AT--A------------------------C--AT----ACA-------T-GTAATTAATATCGGGATTATC-C
gi|11 : gcaaacaaggaaatttccaaatgatcactgtaagcAGTCTGG--ATCATCCCGAC-G-T-T-----TGT----G--T--AT--ACGCCGA---C-----CTG----T----GTATAAACA-------C-ACA---AACGTCGGAATGATC-Ccagactaacctat
gi|13 : ACAAACGTCTGGATGATCGAGAaga
gi|14 : AGTCTGG--ATCATCCCGAC-G-T-T-----TGTGTTTG--T--GG--AG--AGA---C-----A-G------C--GT----ATA-------C-ACA---AACGTCTGGATGATT-Ccttatcagacgaacttcgcgaatgagtcgaagcgttttgatgatcaag
gi|15 : gtctAGTCTGG--AACATCTCGAC-G-T-TAATTATG-----T--TTTGT--A----GAGAGT-----C-G----A-C--GT----ATA-------C-ACA---AACGTAGGGATGA
gi|15 : TGTAGAGAGTCGACGTATACACAAACGTAGGGATGAc
gi|18 : agtctggaacatctcgacgttaattatgtttTAGTCTGG--ATCATCTCGAC-G-T-T-----TGT----G--T--AT--A---C-A---C-----C-GACTCT-C---C----ACA-------C-ACA---AACGTCGGGGTGACC-Cc
gi|22 : GTCTGA--TTTATCCCGACCG-T-T-----TATGA--G--T--ATTGA---GGA---C------------------T----ACA-------C-ATA---AACGTCGGGATGATC-Ca
gi|23 : TAGTCTGG--ATAATCCCGAT-A---T-----TA-----A--T--GT--A---CA----------T-G----T----AT----GTA-------T-ACA---AACGTCGGGATAATaa
gi|24 : atctgcGTCTTG--ATCATCAAGAC-GCT-T-----TG-----ACTT--GT--T---TG----------T-G----T-CTGAT----AAA-------G-ACA---AACGTCTGGATGATa
gi|25 : TAGTCTGG--ATCATCC-GAC-A-T-T-----TT-----A--T--GT--A---CGA---C-----C-G----T-C--GT----ACA-------C-ATA---AACGTCGGGATGATC-C
gi|26 : CTGG--ATCATCCCGAC-A-TAT-----TAT----A--T--GT--A---CGA---C-----C-G----T-C--GT----ACA-------C-ATA---AACGTCGGGATGATC-
gi|27 : AGTCTGG--ATCATCCCGAC-G-T-T-----TG--------T--GG--A---GAG---T-----T-G----T-C--GT----ACA-------C-ATA---AACGTCGGGATGATC-Ctc
gi|28 : AGTCTGG--ATCATCACGAC-G-T-T-----GA-----G---------A---CGAGT-C-----C-G------C--GT----ATA-------C-AAA---CACGTCGGGATTATC-Ca
gi|29 : GTCTTG--ATCATCAAAAC-G-C-T-----T--------------------CGA---CTTATTC-G----T-C--AG----ATA-------TGACA---AACGTCTGGATGATC-ag
gi|3 : cTAGTCTGG--ATCATCCCGAC-A-T-T-----TA-----A--T--GT--A---CGA---C-----C-G----T-C--GT----ACA-------C-ATA---AACGTCGGGATGATC-CTATGGAGAGTCGTCGTACACATAAACGTCGGGATGATCCAGAC
gi|31 : GTCTTG--ATCATCAAAAC-G-C-T-----T--------------------CGA---CT----C-A----TTC--GC----AAA-------G-ACA---AACGTCTGGATGATC-
gi|34 : tctcGCCTTG--ATCATCAAAAC-G-T-T-----T--------------------CGA---CT----C-G----TTC--GC----AAA-------G-ACA---AACGTCTGGATGATC-
gi|4 : TAGTTTTG--ATCATCCCAAC-A-T-T-----TGT----A--T--AT--A---CA-------------------T--GT----ACA-------C--CA---A--GTC--------CACT------AGTCAGCGTGTACAAAAATGTCGGAAGGATCCAGAC
gi|40 : GTATACACAAGCGTATGGATGATCAAGAC
gi|41 : tcatttgtggaGAGTCGGCGTATTTGTAAACATCGGAATGATCCAGACta
gi|42 : TGGAGAGTCGTCGTACACATAAACGTCGGGAtagt
gi|43 : aTATGGAGAGTCGTCGTACACATAAACGTCGGG
gi|5 : AGTCTGG--ATCATCCCGAC-G-C-T-----TG--------T--GT--A---TA-----------------------T----GC--------C-ACA---A-----------------GTGGAGAGTCGGCGTATACACAAACGTCGGGATTATCCAGAC
gi|7 : GTCTGG--ATCATCCCGAC-G-T-T-----TG--------T--GT--A---T------------------------------------------------ACGTT-----------TGTGGAGAGTCGGCGTATACATAAACGTCGGGATGATCCAGAC
gi|8 : TAGTCTGG--ATCATCCCAAT-G-T-T-----TGT----G--T--AT--A---CG----C-----C-GACT-T-C--CC----ATAGAGTGTTC-ACA---AACTTCGGGTTGATt
gi|8 : atctgt-CTATGGGAAGTCGGCGTATACACAAACATTGGGATGATCCAGAC
gi|9 : atctgtatcaacccgaagtttgtgaacactGG--ATCATCCCGAC-G-T-T-----TGT----G--T--AT--A---CG----C-----C------------------------------------ACGTT-----------TGTAGAGAATCGGCATATACACAAACGTCGGTATGATCCAGACta
18 sequences could not be aligned to this reference sequence:
Unaligned ( gi|2 ): AGTTAGAAATTGGTAGTACATAATCATGCATCTATTCCTCAATAATCTTTCATTTAACTGTCAGCATTTCAAAGCATCCAAATAACAGAAAATGCGTTTATGAATATA
Unaligned ( gi|6 ): AGTCATCTGATCATCCAGACGTGTTGTCTTATTCAAAAAACTATCCCGAATTGAGTGCCGGAGCGTGAATTTATCAA
Unaligned ( gi|10 ): TCTCGATCATTGCCCAGACGTTTGGTTCCTTATCAGACGATACTGAGTTGAAGCGCTTTTGATGTATCCAAGAC
Unaligned ( gi|12 ): TAAGCTATATTCTTGCGTCAATACATTCTTCCATTATGATTAACATTCAATACCGGAAATGCGTCAGTATAC
Unaligned ( gi|16 ): CTCGATCATCCAGAAGTTTGTCTTATCATACGAACGAATGAGTCGAAGCGTTTTTGATGATCAAGA
Unaligned ( gi|17 ): TCTCGATCATCCAGACGGTTGTCTTTATACAGAACAAACAAGTCAAAGAGTCTTATGATTCAAGAC
Unaligned ( gi|19 ): CTCGATCATCCAGACGTTTTTTCTTATCCAGACTAACCAGGAGTCGAAGCTTTGGATGATCAAG
Unaligned ( gi|20 ): GATCATCCAGACGTTTGTCTTATCAAACTTCGCGAATGAGTCGAAGCGTTTTGATGATCAAGAC
Unaligned ( gi|21 ): TCGATCATCCAGACGTTGTCTTCATCAGACGCACACGAGTTGAAGCGTTTTGATGATCAAGAC
Unaligned ( gi|30 ): CAATCACCCAGACGCTTGGCTTTACCTCGAAGAAGTCGAGCCGTCTTGATGATGAAGTCT
Unaligned ( gi|32 ): CGTCCAGACGTTTGTCTTTATCAGACGAACAAGTCGAAGCGTTTTGATGATCAAGAC
Unaligned ( gi|33 ): CCAGACGTTTGTTATCAGCTAGACGAACACTCGCAAAGCGTTTTGATGATCAAGAC
Unaligned ( gi|35 ): CTCGATCATCCAGACGTTTGTCTTATCAATGAGCGAGCGTTTTGATGATCAAGAC
Unaligned ( gi|36 ): GTCTCGGTCATCCAGAGGCTTCTCTAACAAGTCCTGGCATCTGGGTGATCAAGAC
Unaligned ( gi|37 ): GTCTTTATCCGATGAACAAGTCGAAGCGTCTTGATGATCAAGACT
Unaligned ( gi|38 ): TTTGAATATTATTTACCGCCATGCAATACCTATTTCAATATTTTT
Unaligned ( gi|39 ): AGACGCTTCGCGAAATGAGTCGAAGCGTTTTGATGATCAAGA
Unaligned ( gi|44 ): TGAGTTGAAGCGTTTTGATGATCAAGACT
Alignments
lowQualScore : 5555555555555555555555555555555555555555555555555555555555555555
lowQualScore : 1 1 1 1 666 7777777777777777777777777777777777777777777777777777777777777777 3 2 4 0 66
lowQualScore : . . . . ... ................................................................ . . . . ..
lowQualScore : 7 7 7 7 111 3333333333333333333333333333333333333333333333333333333333333333 1 4 0 5 99
consensus : TAGTCTGG-ATCATCCCGAC-G-T-T---TG---TGT---GTA---C----GA---C-----C-G----T-----CGT----ACA-------C-ACAAACGTCGGGATGATC-CTGTGGAGAGTCGGCGTATACACAAACGTCGGGATGAT--CCAGAC
Reference ( family-1092 ) : TAGTCTGG-ATCATCCCGAC-G-T-T---TG---TGT---GTA---C----GA---C-----C-G----T-----CGT----ACA-------C-ACAAACGTCGGGATGATC-CTGTGGAGAGTCGGCGTATACACAAACGTCGGGATGAT--CCAGAC
gi|1 : GTATA-ACAAACGTCGGGATAATGGCCAGA
gi|1 : gcaaacaaggaaatttccaaatgatcactgtaagctaaTAGTCTGGGATAATCCCGAT-A-T-TAATTA---CAT---GTA---T----G-------------------------T----ATA---------ACAAACGTCGGGATAATatacatgtaattaatatcgggattatcccagactaacctat
gi|11 : gcaaacaaggaaatttccaaatgatcactgtaagctaatctggccAGTCTGG-ATCATCCCGAC-G-T-T---TG---TGT---ATACGCC----GA---C-----CTG----T------GTATAAACA-------C-ACAAACGTCGGAATGATC-Cacctat
gi|13 : TCTCG-ATCATCCAGAC-G-T-T---TG---Taga
gi|14 : GTCTGA-ATCATCCAGAC-G-T-T---TG---TGT---ATA---C----G----C-----T-G----TCTCTCCAC----AAA-------C-ACAAACGTCGGGATGATC-Ccttatcagacgaacttcgcgaatgagtcgaagcgttttgatgatcaag
gi|15 : AGTCTGG-AACATCTCGAC-G-T-TAATTA---TGTTTTGTA--------GAGAGT-----C-G----A-----CGT----ATA-------C-ACAAACGTAGGGATGAagact
gi|18 : TAGTCTGG-ATCATCTCGAC-G-T-T---TG---TGT---ATA---C-----A---C-----C-GACTCT-----C-C----ACA-------C-ACAAACGTCGGGGTGACC-Cc
gi|22 : GTCTGA-TTTATCCCGACCG-T-T---TA---TGA---GTA---TTGAGGA---C--------------------T----ACA-------C-ATAAACGTCGGGATGATC-Ca
gi|23 : TAGTCTGG-ATAATCCCGAT-A-T-T---AA---TGT---ACA---T----G-----------------------TAT----GTA-------T-ACAAACGTCGGGATAATaa
gi|24 : atctgcGTCTTG-ATCATCAAGAC-GCT-T---TGACTTGT---TTG---T----GT---C-----T-G-----------AT----AAA-------G-ACAAACGTCTGGATGATa
gi|25 : TAGTCTGG-ATCATCC-GAC-A-T-T---T----TAT---GTA---C----GA---C-----C-G----T-----CGT----ACA-------C-ATAAACGTCGGGATGATC-C
gi|26 : CTGG-ATCATCCCGAC-A-TAT---TA---TAT---GTA---C----GA---C-----C-G----T-----CGT----ACA-------C-ATAAACGTCGGGATGATC-
gi|27 : AGTCTGG-ATCATCCCGAC-G-T-T---TG---TG----G-A---G----AG---T-----T-G----T-----CGT----ACA-------C-ATAAACGTCGGGATGATC-Ctc
gi|28 : AGTCTGG-ATCATCACGAC-G---T---TG---AG------A---C----GAGT-C-----C-G----------CGT----ATA-------C-AAACACGTCGGGATTATC-Ca
gi|29 : GTCTTG-ATCATCAAAAC-G-C-T---T----------------C----GA---CTTATTC-G----T-----CAG----ATA-------TGACAAACGTCTGGATGATC-ag
gi|3 : cTAGTCTGG-ATCATCCCGAC-A-T-T---TA----AT---GTA---C----GA---C-----C-G----T-----CGT----ACA-------C-ATAAACGTCGGGATGATC-CTATGGAGAGTCGTCGTACACATAAACGTCGGGATGAT--CCAGAC
gi|31 : GTCTTG-ATCATCAAAAC-G-C-T---T----------------C----GA---CT----C-A----TT----CGC----AAA-------G-ACAAACGTCTGGATGATC-
gi|34 : tctcGCCTTG-ATCATCAAAAC-G-T-T---T----------------C----GA---CT----C-G----TT----CGC----AAA-------G-ACAAACGTCTGGATGATC-
gi|4 : TAGTTTTG-ATCATCCCAAC-A-T-T---TG---TAT---ATA---C----A-----------------------TGT----ACA-------C--CAA--GTC--------CACT------AGTCAGCGTGTACAAAAATGTCGGAAGGAT--CCAGAC
gi|40 : TAGTCTTG-ATCATCCATAC-G-C-T---TG---TGT---ATA---C----
gi|41 : tcatttgtggaGAGTCGGCGTATTTGTAAACATCGGAATGAT--CCAGAC
gi|42 : TGGAGAGTCGTCGTACACATAAACGTCGGGAtagt
gi|43 : aTATGGAGAGTCGTCGTACACATAAACGTCGGG
gi|5 : AGTCTGG-ATCATCCCGAC-G-C-T---TG---TGT---ATA---T----G-------------------------------C--------C-ACAA-----------------GTGGAGAGTCGGCGTATACACAAACGTCGGGATTAT--CCAGAC
gi|7 : GTCTGG-ATCATCCCGAC-G-T-T---TG-----T---GTA---T---------------------------------------------------ACGTT-----------TGTGGAGAGTCGGCGTATACATAAACGTCGGGATGAT--CCAGAC
gi|8 : TAGTCTGG-ATCATCCCAAT-G-T-T---TG---TGT---ATA---C----G----C-----C-GACT-T-----CCC----ATAGAGTGTTC-ACAAACTTCGGGTTGATt
gi|8 : atctgt-CTATGGGAAGTCGGCGTATACACAAACATTGGGATGAT--CCAGAC
gi|9 : atctgtatcaacccgaagtttgtgaacactGG-ATCATCCCGAC-G-T-T---TG---TGT---ATA---C----G----C-----C-----------------------------------ACGTT-----------TGTAGAGAATCGGCATATACACAAACGTCGGTATGAT--CCAGACta
18 sequences could not be aligned to this reference sequence:
Unaligned ( gi|2 ): AGTTAGAAATTGGTAGTACATAATCATGCATCTATTCCTCAATAATCTTTCATTTAACTGTCAGCATTTCAAAGCATCCAAATAACAGAAAATGCGTTTATGAATATA
Unaligned ( gi|6 ): AGTCATCTGATCATCCAGACGTGTTGTCTTATTCAAAAAACTATCCCGAATTGAGTGCCGGAGCGTGAATTTATCAA
Unaligned ( gi|10 ): TCTCGATCATTGCCCAGACGTTTGGTTCCTTATCAGACGATACTGAGTTGAAGCGCTTTTGATGTATCCAAGAC
Unaligned ( gi|12 ): TAAGCTATATTCTTGCGTCAATACATTCTTCCATTATGATTAACATTCAATACCGGAAATGCGTCAGTATAC
Unaligned ( gi|16 ): CTCGATCATCCAGAAGTTTGTCTTATCATACGAACGAATGAGTCGAAGCGTTTTTGATGATCAAGA
Unaligned ( gi|17 ): TCTCGATCATCCAGACGGTTGTCTTTATACAGAACAAACAAGTCAAAGAGTCTTATGATTCAAGAC
Unaligned ( gi|19 ): CTCGATCATCCAGACGTTTTTTCTTATCCAGACTAACCAGGAGTCGAAGCTTTGGATGATCAAG
Unaligned ( gi|20 ): GATCATCCAGACGTTTGTCTTATCAAACTTCGCGAATGAGTCGAAGCGTTTTGATGATCAAGAC
Unaligned ( gi|21 ): TCGATCATCCAGACGTTGTCTTCATCAGACGCACACGAGTTGAAGCGTTTTGATGATCAAGAC
Unaligned ( gi|30 ): CAATCACCCAGACGCTTGGCTTTACCTCGAAGAAGTCGAGCCGTCTTGATGATGAAGTCT
Unaligned ( gi|32 ): CGTCCAGACGTTTGTCTTTATCAGACGAACAAGTCGAAGCGTTTTGATGATCAAGAC
Unaligned ( gi|33 ): CCAGACGTTTGTTATCAGCTAGACGAACACTCGCAAAGCGTTTTGATGATCAAGAC
Unaligned ( gi|35 ): CTCGATCATCCAGACGTTTGTCTTATCAATGAGCGAGCGTTTTGATGATCAAGAC
Unaligned ( gi|36 ): GTCTCGGTCATCCAGAGGCTTCTCTAACAAGTCCTGGCATCTGGGTGATCAAGAC
Unaligned ( gi|37 ): GTCTTTATCCGATGAACAAGTCGAAGCGTCTTGATGATCAAGACT
Unaligned ( gi|38 ): TTTGAATATTATTTACCGCCATGCAATACCTATTTCAATATTTTT
Unaligned ( gi|39 ): AGACGCTTCGCGAAATGAGTCGAAGCGTTTTGATGATCAAGA
Unaligned ( gi|44 ): TGAGTTGAAGCGTTTTGATGATCAAGACT
Alignments
lowQualScore : 5555555555555555555555555555555555555555555555555555555555555555
lowQualScore : 1 1 1 1 666 7777777777777777777777777777777777777777777777777777777777777777 3 2 4 0 66
lowQualScore : . . . . ... ................................................................ . . . . ..
lowQualScore : 7 7 7 7 111 3333333333333333333333333333333333333333333333333333333333333333 1 4 0 5 99
consensus : TAGTCTGG-ATCATCCCGAC-G-T-T---TG---TGT---GTA---C----GA---C-----C-G----T-----CGT----ACA-------C-ACAAACGTCGGGATGATC-CTGTGGAGAGTCGGCGTATACACAAACGTCGGGATGAT--CCAGAC
Reference ( family-1092 ) : TAGTCTGG-ATCATCCCGAC-G-T-T---TG---TGT---GTA---C----GA---C-----C-G----T-----CGT----ACA-------C-ACAAACGTCGGGATGATC-CTGTGGAGAGTCGGCGTATACACAAACGTCGGGATGAT--CCAGAC
gi|1 : GTATA-ACAAACGTCGGGATAATGGCCAGA
gi|1 : gcaaacaaggaaatttccaaatgatcactgtaagctaaTAGTCTGGGATAATCCCGAT-A-T-TAATTA---CAT---GTA---T----G-------------------------T----ATA---------ACAAACGTCGGGATAATatacatgtaattaatatcgggattatcccagactaacctat
gi|11 : gcaaacaaggaaatttccaaatgatcactgtaagctaatctggccAGTCTGG-ATCATCCCGAC-G-T-T---TG---TGT---ATACGCC----GA---C-----CTG----T------GTATAAACA-------C-ACAAACGTCGGAATGATC-Cacctat
gi|13 : TCTCG-ATCATCCAGAC-G-T-T---TG---Taga
gi|14 : GTCTGA-ATCATCCAGAC-G-T-T---TG---TGT---ATA---C----G----C-----T-G----TCTCTCCAC----AAA-------C-ACAAACGTCGGGATGATC-Ccttatcagacgaacttcgcgaatgagtcgaagcgttttgatgatcaag
gi|15 : AGTCTGG-AACATCTCGAC-G-T-TAATTA---TGTTTTGTA--------GAGAGT-----C-G----A-----CGT----ATA-------C-ACAAACGTAGGGATGAagact
gi|18 : TAGTCTGG-ATCATCTCGAC-G-T-T---TG---TGT---ATA---C-----A---C-----C-GACTCT-----C-C----ACA-------C-ACAAACGTCGGGGTGACC-Cc
gi|22 : GTCTGA-TTTATCCCGACCG-T-T---TA---TGA---GTA---TTGAGGA---C--------------------T----ACA-------C-ATAAACGTCGGGATGATC-Ca
gi|23 : TAGTCTGG-ATAATCCCGAT-A-T-T---AA---TGT---ACA---T----G-----------------------TAT----GTA-------T-ACAAACGTCGGGATAATaa
gi|24 : atctgcGTCTTG-ATCATCAAGAC-GCT-T---TGACTTGT---TTG---T----GT---C-----T-G-----------AT----AAA-------G-ACAAACGTCTGGATGATa
gi|25 : TAGTCTGG-ATCATCC-GAC-A-T-T---T----TAT---GTA---C----GA---C-----C-G----T-----CGT----ACA-------C-ATAAACGTCGGGATGATC-C
gi|26 : CTGG-ATCATCCCGAC-A-TAT---TA---TAT---GTA---C----GA---C-----C-G----T-----CGT----ACA-------C-ATAAACGTCGGGATGATC-
gi|27 : AGTCTGG-ATCATCCCGAC-G-T-T---TG---TG----G-A---G----AG---T-----T-G----T-----CGT----ACA-------C-ATAAACGTCGGGATGATC-Ctc
gi|28 : AGTCTGG-ATCATCACGAC-G---T---TG---AG------A---C----GAGT-C-----C-G----------CGT----ATA-------C-AAACACGTCGGGATTATC-Ca
gi|29 : GTCTTG-ATCATCAAAAC-G-C-T---T----------------C----GA---CTTATTC-G----T-----CAG----ATA-------TGACAAACGTCTGGATGATC-ag
gi|3 : cTAGTCTGG-ATCATCCCGAC-A-T-T---TA----AT---GTA---C----GA---C-----C-G----T-----CGT----ACA-------C-ATAAACGTCGGGATGATC-CTATGGAGAGTCGTCGTACACATAAACGTCGGGATGAT--CCAGAC
gi|31 : GTCTTG-ATCATCAAAAC-G-C-T---T----------------C----GA---CT----C-A----TT----CGC----AAA-------G-ACAAACGTCTGGATGATC-
gi|34 : tctcGCCTTG-ATCATCAAAAC-G-T-T---T----------------C----GA---CT----C-G----TT----CGC----AAA-------G-ACAAACGTCTGGATGATC-
gi|4 : TAGTTTTG-ATCATCCCAAC-A-T-T---TG---TAT---ATA---C----A-----------------------TGT----ACA-------C--CAA--GTC--------CACT------AGTCAGCGTGTACAAAAATGTCGGAAGGAT--CCAGAC
gi|40 : TAGTCTTG-ATCATCCATAC-G-C-T---TG---TGT---ATA---C----
gi|41 : tcatttgtggaGAGTCGGCGTATTTGTAAACATCGGAATGAT--CCAGAC
gi|42 : TGGAGAGTCGTCGTACACATAAACGTCGGGAtagt
gi|43 : aTATGGAGAGTCGTCGTACACATAAACGTCGGG
gi|5 : AGTCTGG-ATCATCCCGAC-G-C-T---TG---TGT---ATA---T----G-------------------------------C--------C-ACAA-----------------GTGGAGAGTCGGCGTATACACAAACGTCGGGATTAT--CCAGAC
gi|7 : GTCTGG-ATCATCCCGAC-G-T-T---TG-----T---GTA---T---------------------------------------------------ACGTT-----------TGTGGAGAGTCGGCGTATACATAAACGTCGGGATGAT--CCAGAC
gi|8 : TAGTCTGG-ATCATCCCAAT-G-T-T---TG---TGT---ATA---C----G----C-----C-GACT-T-----CCC----ATAGAGTGTTC-ACAAACTTCGGGTTGATt
gi|8 : atctgt-CTATGGGAAGTCGGCGTATACACAAACATTGGGATGAT--CCAGAC
gi|9 : atctgtatcaacccgaagtttgtgaacactGG-ATCATCCCGAC-G-T-T---TG---TGT---ATA---C----G----C-----C-----------------------------------ACGTT-----------TGTAGAGAATCGGCATATACACAAACGTCGGTATGAT--CCAGACta
blockSeqs : . C C A AAT GTGTATACGCCGACTTCCCATAGAGTGTTC G A A .
blockSeqs : . . . . . GTGTATACGCCGACCTGTGTATAAACAC G . G .
blockSeqs : . . . . . ATGTTTTGTAGAGAGTCGACGTATAC G . G .
blockSeqs : . . . . . GTGTATACGCTGTCTCTCCACAAAC G . A .
blockSeqs : . . . . . GTGTATACACCGACTCTCCACAC G . G .
blockSeqs : . . . . . GACTTGTTTGTGTCTGATAAAG G . . .
blockSeqs : . . . . . ATATGTACGACCGTCGTACAC T . .
blockSeqs : . . . . . ATGAGTATTGAGGACTACAC G .
blockSeqs : . . . . . TATGTACGACCGTCGTACAC G .
blockSeqs : . . . . . CGACTTATTCGTCAGATATG G .
blockSeqs : . . . . . AATGTACGACCGTCGTACAC G .
blockSeqs : . . . . . GTGGAGAGTTGTCGTACAC T .
blockSeqs : . . . . . GAGACGAGTCCGCGTATAC G .
blockSeqs : . . . . . ATGTACATGTATGTAT T .
blockSeqs : . . . . . CGACTCATTCGCAAAG T .
blockSeqs : . . . . . CGACTCGTTCGCAAAG G .
blockSeqs : . . . . . GTATATACATGTACAC .
blockSeqs : . . . . . GTGTATATGCC .
blockSeqs : . . . . . GTGTATACGCC .
blockSeqs : . . . . . GTGTAT .
blockSeqs : . . . . .
blockSeqs : . . . . .
blockSeqCons : *** **
originalCons : TAGTCTGG-ATCATCCCGAC-G-T-T---TG---TGT---GTA---C----GA---C-----C-G----T-----CGT----ACA-------C-ACAAACGTCGGGATGATC-CTGTGGAGAGTCGGCGTATACACAAACGTCGGGATGAT--CCAGAC
finalCons : TAGTCTGG-ATCATCCCGAC-G-T-T---TG---TGT---GTA---C----GA---C-----C-G----T-----CGT----ACA-------C-ACAAACGTCGGGATGATC-CTGTGGAGAGTCGGCGTATACACAAACGTCGGGATGAT--CCAGAC
18 sequences could not be aligned to this reference sequence:
Unaligned ( gi|2 ): AGTTAGAAATTGGTAGTACATAATCATGCATCTATTCCTCAATAATCTTTCATTTAACTGTCAGCATTTCAAAGCATCCAAATAACAGAAAATGCGTTTATGAATATA
Unaligned ( gi|6 ): AGTCATCTGATCATCCAGACGTGTTGTCTTATTCAAAAAACTATCCCGAATTGAGTGCCGGAGCGTGAATTTATCAA
Unaligned ( gi|10 ): TCTCGATCATTGCCCAGACGTTTGGTTCCTTATCAGACGATACTGAGTTGAAGCGCTTTTGATGTATCCAAGAC
Unaligned ( gi|12 ): TAAGCTATATTCTTGCGTCAATACATTCTTCCATTATGATTAACATTCAATACCGGAAATGCGTCAGTATAC
Unaligned ( gi|16 ): CTCGATCATCCAGAAGTTTGTCTTATCATACGAACGAATGAGTCGAAGCGTTTTTGATGATCAAGA
Unaligned ( gi|17 ): TCTCGATCATCCAGACGGTTGTCTTTATACAGAACAAACAAGTCAAAGAGTCTTATGATTCAAGAC
Unaligned ( gi|19 ): CTCGATCATCCAGACGTTTTTTCTTATCCAGACTAACCAGGAGTCGAAGCTTTGGATGATCAAG
Unaligned ( gi|20 ): GATCATCCAGACGTTTGTCTTATCAAACTTCGCGAATGAGTCGAAGCGTTTTGATGATCAAGAC
Unaligned ( gi|21 ): TCGATCATCCAGACGTTGTCTTCATCAGACGCACACGAGTTGAAGCGTTTTGATGATCAAGAC
Unaligned ( gi|30 ): CAATCACCCAGACGCTTGGCTTTACCTCGAAGAAGTCGAGCCGTCTTGATGATGAAGTCT
Unaligned ( gi|32 ): CGTCCAGACGTTTGTCTTTATCAGACGAACAAGTCGAAGCGTTTTGATGATCAAGAC
Unaligned ( gi|33 ): CCAGACGTTTGTTATCAGCTAGACGAACACTCGCAAAGCGTTTTGATGATCAAGAC
Unaligned ( gi|35 ): CTCGATCATCCAGACGTTTGTCTTATCAATGAGCGAGCGTTTTGATGATCAAGAC
Unaligned ( gi|36 ): GTCTCGGTCATCCAGAGGCTTCTCTAACAAGTCCTGGCATCTGGGTGATCAAGAC
Unaligned ( gi|37 ): GTCTTTATCCGATGAACAAGTCGAAGCGTCTTGATGATCAAGACT
Unaligned ( gi|38 ): TTTGAATATTATTTACCGCCATGCAATACCTATTTCAATATTTTT
Unaligned ( gi|39 ): AGACGCTTCGCGAAATGAGTCGAAGCGTTTTGATGATCAAGA
Unaligned ( gi|44 ): TGAGTTGAAGCGTTTTGATGATCAAGACT
Alignments
lowQualScore : 5555555555555555555555555555555555555555555555555555555555555555
lowQualScore : 1 1 1 1 666 7777777777777777777777777777777777777777777777777777777777777777 3 2 4 0 66
lowQualScore : . . . . ... ................................................................ . . . . ..
lowQualScore : 7 7 7 7 111 3333333333333333333333333333333333333333333333333333333333333333 1 4 0 5 99
consensus : TAGTCTGG-ATCATCCCGAC-G-T-T---TG---TGT---GTA---C----GA---C-----C-G----T-----CGT----ACA-------C-ACAAACGTCGGGATGATC-CTGTGGAGAGTCGGCGTATACACAAACGTCGGGATGAT--CCAGAC
Reference ( family-1092 ) : TAGTCTGG-ATCATCCCGAC-G-T-T---TG---TGT---GTA---C----GA---C-----C-G----T-----CGT----ACA-------C-ACAAACGTCGGGATGATC-CTGTGGAGAGTCGGCGTATACACAAACGTCGGGATGAT--CCAGAC
gi|1 : GTATA-ACAAACGTCGGGATAATGGCCAGA
gi|1 : gcaaacaaggaaatttccaaatgatcactgtaagctaaTAGTCTGGGATAATCCCGAT-A-T-TAATTA---CAT---GTA---T----G-------------------------T----ATA---------ACAAACGTCGGGATAATatacatgtaattaatatcgggattatcccagactaacctat
gi|11 : gcaaacaaggaaatttccaaatgatcactgtaagctaatctggccAGTCTGG-ATCATCCCGAC-G-T-T---TG---TGT---ATACGCC----GA---C-----CTG----T------GTATAAACA-------C-ACAAACGTCGGAATGATC-Cacctat
gi|13 : TCTCG-ATCATCCAGAC-G-T-T---TG---Taga
gi|14 : GTCTGA-ATCATCCAGAC-G-T-T---TG---TGT---ATA---C----G----C-----T-G----TCTCTCCAC----AAA-------C-ACAAACGTCGGGATGATC-Ccttatcagacgaacttcgcgaatgagtcgaagcgttttgatgatcaag
gi|15 : AGTCTGG-AACATCTCGAC-G-T-TAATTA---TGTTTTGTA--------GAGAGT-----C-G----A-----CGT----ATA-------C-ACAAACGTAGGGATGAagact
gi|18 : TAGTCTGG-ATCATCTCGAC-G-T-T---TG---TGT---ATA---C-----A---C-----C-GACTCT-----C-C----ACA-------C-ACAAACGTCGGGGTGACC-Cc
gi|22 : GTCTGA-TTTATCCCGACCG-T-T---TA---TGA---GTA---TTGAGGA---C--------------------T----ACA-------C-ATAAACGTCGGGATGATC-Ca
gi|23 : TAGTCTGG-ATAATCCCGAT-A-T-T---AA---TGT---ACA---T----G-----------------------TAT----GTA-------T-ACAAACGTCGGGATAATaa
gi|24 : atctgcGTCTTG-ATCATCAAGAC-GCT-T---TGACTTGT---TTG---T----GT---C-----T-G-----------AT----AAA-------G-ACAAACGTCTGGATGATa
gi|25 : TAGTCTGG-ATCATCC-GAC-A-T-T---T----TAT---GTA---C----GA---C-----C-G----T-----CGT----ACA-------C-ATAAACGTCGGGATGATC-C
gi|26 : CTGG-ATCATCCCGAC-A-TAT---TA---TAT---GTA---C----GA---C-----C-G----T-----CGT----ACA-------C-ATAAACGTCGGGATGATC-
gi|27 : AGTCTGG-ATCATCCCGAC-G-T-T---TG---TG----G-A---G----AG---T-----T-G----T-----CGT----ACA-------C-ATAAACGTCGGGATGATC-Ctc
gi|28 : AGTCTGG-ATCATCACGAC-G---T---TG---AG------A---C----GAGT-C-----C-G----------CGT----ATA-------C-AAACACGTCGGGATTATC-Ca
gi|29 : GTCTTG-ATCATCAAAAC-G-C-T---T----------------C----GA---CTTATTC-G----T-----CAG----ATA-------TGACAAACGTCTGGATGATC-ag
gi|3 : cTAGTCTGG-ATCATCCCGAC-A-T-T---TA----AT---GTA---C----GA---C-----C-G----T-----CGT----ACA-------C-ATAAACGTCGGGATGATC-CTATGGAGAGTCGTCGTACACATAAACGTCGGGATGAT--CCAGAC
gi|31 : GTCTTG-ATCATCAAAAC-G-C-T---T----------------C----GA---CT----C-A----TT----CGC----AAA-------G-ACAAACGTCTGGATGATC-
gi|34 : tctcGCCTTG-ATCATCAAAAC-G-T-T---T----------------C----GA---CT----C-G----TT----CGC----AAA-------G-ACAAACGTCTGGATGATC-
gi|4 : TAGTTTTG-ATCATCCCAAC-A-T-T---TG---TAT---ATA---C----A-----------------------TGT----ACA-------C--CAA--GTC--------CACT------AGTCAGCGTGTACAAAAATGTCGGAAGGAT--CCAGAC
gi|40 : TAGTCTTG-ATCATCCATAC-G-C-T---TG---TGT---ATA---C----
gi|41 : tcatttgtggaGAGTCGGCGTATTTGTAAACATCGGAATGAT--CCAGAC
gi|42 : TGGAGAGTCGTCGTACACATAAACGTCGGGAtagt
gi|43 : aTATGGAGAGTCGTCGTACACATAAACGTCGGG
gi|5 : AGTCTGG-ATCATCCCGAC-G-C-T---TG---TGT---ATA---T----G-------------------------------C--------C-ACAA-----------------GTGGAGAGTCGGCGTATACACAAACGTCGGGATTAT--CCAGAC
gi|7 : GTCTGG-ATCATCCCGAC-G-T-T---TG-----T---GTA---T---------------------------------------------------ACGTT-----------TGTGGAGAGTCGGCGTATACATAAACGTCGGGATGAT--CCAGAC
gi|8 : TAGTCTGG-ATCATCCCAAT-G-T-T---TG---TGT---ATA---C----G----C-----C-GACT-T-----CCC----ATAGAGTGTTC-ACAAACTTCGGGTTGATt
gi|8 : atctgt-CTATGGGAAGTCGGCGTATACACAAACATTGGGATGAT--CCAGAC
gi|9 : atctgtatcaacccgaagtttgtgaacactGG-ATCATCCCGAC-G-T-T---TG---TGT---ATA---C----G----C-----C-----------------------------------ACGTT-----------TGTAGAGAATCGGCATATACACAAACGTCGGTATGAT--CCAGACta
18 sequences could not be aligned to this reference sequence:
Unaligned ( gi|2 ): AGTTAGAAATTGGTAGTACATAATCATGCATCTATTCCTCAATAATCTTTCATTTAACTGTCAGCATTTCAAAGCATCCAAATAACAGAAAATGCGTTTATGAATATA
Unaligned ( gi|6 ): AGTCATCTGATCATCCAGACGTGTTGTCTTATTCAAAAAACTATCCCGAATTGAGTGCCGGAGCGTGAATTTATCAA
Unaligned ( gi|10 ): TCTCGATCATTGCCCAGACGTTTGGTTCCTTATCAGACGATACTGAGTTGAAGCGCTTTTGATGTATCCAAGAC
Unaligned ( gi|12 ): TAAGCTATATTCTTGCGTCAATACATTCTTCCATTATGATTAACATTCAATACCGGAAATGCGTCAGTATAC
Unaligned ( gi|16 ): CTCGATCATCCAGAAGTTTGTCTTATCATACGAACGAATGAGTCGAAGCGTTTTTGATGATCAAGA
Unaligned ( gi|17 ): TCTCGATCATCCAGACGGTTGTCTTTATACAGAACAAACAAGTCAAAGAGTCTTATGATTCAAGAC
Unaligned ( gi|19 ): CTCGATCATCCAGACGTTTTTTCTTATCCAGACTAACCAGGAGTCGAAGCTTTGGATGATCAAG
Unaligned ( gi|20 ): GATCATCCAGACGTTTGTCTTATCAAACTTCGCGAATGAGTCGAAGCGTTTTGATGATCAAGAC
Unaligned ( gi|21 ): TCGATCATCCAGACGTTGTCTTCATCAGACGCACACGAGTTGAAGCGTTTTGATGATCAAGAC
Unaligned ( gi|30 ): CAATCACCCAGACGCTTGGCTTTACCTCGAAGAAGTCGAGCCGTCTTGATGATGAAGTCT
Unaligned ( gi|32 ): CGTCCAGACGTTTGTCTTTATCAGACGAACAAGTCGAAGCGTTTTGATGATCAAGAC
Unaligned ( gi|33 ): CCAGACGTTTGTTATCAGCTAGACGAACACTCGCAAAGCGTTTTGATGATCAAGAC
Unaligned ( gi|35 ): CTCGATCATCCAGACGTTTGTCTTATCAATGAGCGAGCGTTTTGATGATCAAGAC
Unaligned ( gi|36 ): GTCTCGGTCATCCAGAGGCTTCTCTAACAAGTCCTGGCATCTGGGTGATCAAGAC
Unaligned ( gi|37 ): GTCTTTATCCGATGAACAAGTCGAAGCGTCTTGATGATCAAGACT
Unaligned ( gi|38 ): TTTGAATATTATTTACCGCCATGCAATACCTATTTCAATATTTTT
Unaligned ( gi|39 ): AGACGCTTCGCGAAATGAGTCGAAGCGTTTTGATGATCAAGA
Unaligned ( gi|44 ): TGAGTTGAAGCGTTTTGATGATCAAGACT