lowQualScore : 111111111
lowQualScore : 3333333333333333 2 11111 11111 5555555555 11111 22222222 1 2222222 77777777777777777777777777777 22222222222 111111 88888888888888888888888888888888888888888888888888888888 555555555555555555555555555555 11 666666666666666 55555555555555555 1111 1111111111 2222222 000000000 1 22 777
lowQualScore : 4 777 0000000000000000 9 3 3 3 4 3 55555 6666 88 4 3 77777 00000 5555555555 3 3 88 0 88888 44 3 3 3 6 22222222 5 6666 7 6 0000000 55 6 44444444444444444444444444444 0 9999 3 77 00000000000 4 77777 555 6666 666666 6666 444 3 44444444444444444444444444444444444444444444444444444444 555 3 0 888888888888888888888888888888 22 44 44 3 44 44 0 3 444444444444444 5 7777 1 7 99 999 99999999999999999 55 3 4444 6 0 3 7777777777 00 6666666 1 99 000000000 1 4 88 9999 000
lowQualScore : . ... ................ . . . . . . ..... .... .. . . ..... ..... .......... . . .. . ..... .. . . . . ........ . .... . . ....... .. . ............................. . .... . .. ........... . ..... ... .... ...... .... ... . ........................................................ ... . . .............................. .. .. .. . .. .. . . ............... . .... . . .. ... ................. .. . .... . . . .......... .. ....... . .. ......... . . .. .... ...
lowQualScore : 0 888 8888888888888888 0 3 3 1 6 3 77777 5555 88 4 5 77777 88888 9999999999 1 1 22 5 22222 22 1 5 3 0 22222222 2 5555 6 2 4444444 00 8 22222222222222222222222222222 2 2222 3 33 00000000000 9 77777 000 1111 999999 5555 111 3 66666666666666666666666666666666666666666666666666666666 888 8 3 000000000000000000000000000000 66 22 22 7 66 88 7 3 666666666666666 1 7777 8 6 77 666 33333333333333333 55 2 2222 9 7 9 1111111111 44 6666666 8 99 444444444 2 4 66 4444 000
consensus : ACAAATATGTCCATAGGACATGAA---TGC---CCCGCCCNTGT-GACAATT-G-TAA-TTGC-TC----TCA----ATTACTTT-GAAGAATGT-----A-----ATTAAAT-AC--AT-TT-CAATTACTGAAGTTTATN----T--CAAA-ATGTCTT-GGAAGA------CTTGACCTCGAAGCCTGCTTTGATTCG----TCTTCAAGCTTTTTG------AGGA--ATTCTGCTAAAAATAT---GGCT------TTG-------CCAGATG-CNT-TTTC--T--G--GCNTATGAAATTCATCCAG-----TA---CATT----T-T----AA----G-TCATG-TT---------------G-----------AG------------T---AT-----CTG-AATG---AAGTGAACTCTTAC---------TC-G-G----TTATTTTT-CTACCTG-TGCCT--TTG--TTCTCGGGTATGAGAGGGGT--TCACACCTGAACA-AA---C-----------TATAGCC----CTGGGCACT-GTGGC--CATGCTGCATCAAG------------TATA--TAGACATAATGAGACATCTAATCATTGCATNA-----ACACCCCATG-ACA-A-CAGTGAAACAGTCTAA------CACCATTATTATCAG-ACACTTTCAT----TCC---ATCATTTTC
Reference ( gi|6 ) : ACAAATATGTCCGTAGGACATGAA---TGG---CTTGCCCGTGA-GACAGTT-G-TAA-T-GC-TA----TCA----ATTACTTT-AAAAAATGT-----A-----AT------AC--AT-TT-CAATTGCTGAAGTTTATA----T--CAAA-ATGTTTT-GGAAAA------CATGACCTCAAAGCCTGCTTTGATTCG----TCTTCAAGCATCTTT------AGGA--ATTCTACTAAAGATAT---GGCT------TTG-------CCAGATT-CCT-TTTC--T--G--GCATACGAAATTCGTCCAG-----TA---CATT----T-T----AA----G-TCATG-TT---------------G-----------AG------------T---AT-----CCC-AATG---AAGTGAACTCTTAC---------TC-A-A----TTATTTTTGCAACCTA-TGCCT--TTG--TTCTCGGGTATGAGAGGAGT--TCACATCTGAACA-AA---TA----------TATAGCC----CTGGGTACT-ATGGT--CATGCTGCAGAAAG------------TATA--CAGACATAAGGAGACGTCTAATCATTGCATTA-----ACACCTCATG-ACA-ACCAGTGAAATAGTCTAACAACATCACCATTATTATCCG-ACTTTTTCAT----TCCCGGATCATTTTC
gi|12 : ACAACTAGG--CACAGGACATGAT---T------TTGCCTTTGT-GACAATT-G-TAA-TTGC-TC----TCA----ATCACTTT-TAAGAATGT-----A--------------C--AT-TT--AATTTTAGAAA---ATACTTTT--CAAC--TGCTTCCGGAAGA------CTTGACCTCGAATCCTGCTTTGAA-AG----TCTCCAAGAATTTTG------AGGA--ATTCTGCTAAA--TAT-----------------------CCATATT-CCT-TTAT--T--A--GCATATGAAATTAATCCAG-----TT---TATT----T-C----AA----G-TCATG-CT---------------G-----------AG------------T---
gi|10 : actgcatagataaataatgcttctgttaaatattgttaaaaagatatatcAAATGTATCCATAGGACCTAAA---CGC---CCCGCTTGTGA---CAGTT-G-TAA-TTGC-TC----TTATACTAGTACTTT-GAAGAAAGT-----A-----AT-------------------TT-CTGAAGTTTATA----T--CAAA-ATATCTT-GGAAGA------CTTGACCTCGAAGCTTGCTTTGATTTG----ACTTCAAGCTTTTTTG-----AGAA--ATTCTGCTATAAATAT---GGCTTCCAAATTT-------CCAGATT-CCT-TTTC--T--A--GCATATGAATTTCATCCAG-----TA---CATT----T-T----AA----G-TCATG-TT---------------G-----------AGTTCTGAATATGAT---AT-----CTG-AATG----AGCGAACTCTTAC---------TC-A-G----GT-TTTTTTTAATCT--TGTCT--TTG--ATCTCAAATATGAGAGtctgactgtaatttatgaatgaag
gi|16 : gaatgatgctaccgctctgaaagatggtgatcgctagAAATAAGCCCATAGGACATGAA---TGC---CCTGCCCATGT-GACAATC-A-TAA-TTGC-TT----TTA----ATTACTTT-GAGGACTGT-----A-----ATTAAAT-AC--AT-TT-CAATCACTGAAGTTTATT----T--CAAA-ACGTCTT-GAAAGA------CTTTACCTCAAAGCCTGCTTTGATTCA----CCTTTAAAC-TTTTG------AGGA--ATTCTGCTAAAAATTT---GAAA------TTT-------CCAGATG-CAT-TTTC--T--G--GGATATGAAATTCATCCAG-----TA---CATT----
gi|1 : agaactagAAAAATGTCCATAGGACATGAA---TGT---CTTGT-------GACAATT-G-TAAAT-GC-CC----TCA----ATTACTTT-GAAGAAGGT-----A-----ATTTTGATAC--AT-TT-CAATTACTGCAGTTTATT----T--CAAA-ATGTCTT-GAAAGA------CTTGACTTCGAAGCCTGCTTT-----G----TCTTTAAACTTTTTG------AGAA--ATTCTGCTAAAAAGAT---GACTTAGAAATTT-------TCATATT-TCT-TTTC--T--A--ATATATGACATTTATCCAC-----TA---GATTTTAAT-T----AA----G-TCATG-TT---------------G-----------AG------------T---
gi|34 : actgtacatcaaaacatgattccagtttatatttgttaaaaaaagaacaaaAAATATGTCCGAAGGACATGAA---TGC---CCCACCCTTGtctaaatattctcctgtgtgaacgtcgcacctgaaaacccctatagcactgtggcagtatttagacacagtgatacatctaatcattgcattaccacctcaaacagtcgaacaccattattattagagactttcattccattattttcaaacttttaaatttgaataaagactgtacttgaaaagtaattgaaatattgacctttttatgaatgtaaagcaaagtcagtcacaaatacatccaattactttatgaaacgtactagtatttaaatgcaacttaaattaccccatctttgaccagctgtatgatgattcaagttcattatctctgtatatagcaaatgtatagatgatctctcatatcatttgatgtgttttcacaaagatggatttgaaagttaataaaa
gi|28 : acagaataaaaccaaactagAAATATGTCCATAAGACAGAAA---TGC---CCCACCCTTGT-GACAATT-ATTAA-T-tg
gi|22 : cttgacttaccttatgaattctctatattgtgttcaaactagAATTTGTCCATAT-ATATGAAAATTGAAAACCCACCCATGTTGATA-TT-G-TAA-TTGC-TC----TCA----ATTACTTT-GAAGAGTGTGATTAA-----AT------GC--AT-TT-CAATTACTGAAGTTTAT-----T--TAAATATGTCTT-GGAAGA------T-TGACCTCAAAATCTGCTTTGATTtgc
gi|17 : aactaggTGTGTCCATAGGACCTGAA---TG------------TGA-AAT-------CAC-T-GC-TC----TCA----ATTACTTT-GAAGAAAGT-----A-----ATTAAAT-AC--AT-TT-CAATTACCAAAGTTTA-A----T--TCAA-ATGTCTT-GGAAGG------TTTGACCCCAAAGGCTGCTTTGATTCGATCATCTTCAAGC--TTTTAGGTAGAGGA--ATTCTGC-AAAAATTT---GGCT------TTGAAAATTTTCAGATG-CAT-TTTC--TCAG--ACA-ATGATGTTCATTCA
gi|9 : AA---TGT---CCCGCCCATTT-GAAAATT-G-TAA-TTGC-TA----TCA----ATTACTTT-GAAGAATGT-----ATTTAAAT------AC--ATATTGCAATTACTGAAGTTTATT----T--CAAA-ATATCTT-GGAAGA------CGT--TCTTGAAGCCTGCTTTGATTCA----TCTTCAAGCTTCTTG------AGGA--ATTCTGCTAAAAAT---------------TT--------CCAGATG-CAT-TATC--T--G--AGACATGAAATTCATCCCG-----TA---CATT----T-G----AA----G-ACAAG-TT---------------G-----------AG------------T---AT-----CTG-AATG---AATAGAACTCTT--------------A-G----GTATTTTTTCTACCTA-------------------GATATGAGATGGGT--TCATACCTAAATA-AT---GC----------TATAGCC----CTGGGCACT-GTGGC--CATGCTGCATCAAG------------TATA--TAGACATAATGAGACATCTGATTAT
gi|20 : -GACAATTTG-TAA-TTGC-TC----TCA----ATCTCTTT-GAAGAATGT-----A-----AT-------------------TTACTAAAGTTCATG----T--CAAT-ATGATTT-TGAAGA------CTTGACTTCGAAGTTTGCTGTAA-TAG----TCTCCAAGC
gi|4 : aaactagaaataagtccacagTT-G-TAA-TTGC-TC----TCA----ATTACTTT-GAAGACTGT-----A-----ATCAAAT-AC--AT-TT-CAATTACTGC--TTTATT----T--CAGA-ATGTCTT-GGAAGA------CTTGACCTTGAAGCCTGCTCTGATTCA----TCTTCATGATTGTTG------AGTA--TTTCTGCTAAAAGT-T---GACT------T----------CAGA----AT-TTTC--T--A---------AAAT--GTTCAGGTCTCTA---TATA----T-------A----GCTAATG-T----------------------------AT------------T---GT-----TTG-AATA---AAGTGAACTCTTAA---------TC-A-GGAGGTTGTTCT---ACCCCG-TGTCT--TTG--TTCTTTGATATGAGAGGGGT--TCACTCCTGAACA-AA---CT----------TATTGCC----CTTGGCACT-GGGGT--CATGCTCCACCAAA------------AATA--TAGACATAATAAGACATCTCATTAATGCATAA-----ATACACCATGTGTA-A-CACTGAAATAGTTTA-------CACCATTATCATCAG-ACACTTTCAT----TAC---ATCATTGTCttgtagacgaagtttttgtaattacttccatagctttctc
gi|11 : aT-G-TAG-TTGC-TC----TCA----ATTACTAT-AA----T-T-----AG----AT------AC--AT-TT-CGATAATTGA--TTTCTA----TTACAAA-ATGTCTT-GAAAGA------CTTGACCTCGAAGCCTGCTTTAATTCA----TCTTCAAACTTTTTG------AGGA--ATTTTGCTGAA-ACATTAAGG-T------TTGAAATTT-TCAGATG-CAT-TTTC--T--A--CCTTCTGAAATTCATCCAG-----TA---CAAA----T-C----AA----G-TAATT-TT---------------GATTCTGAATGAAA------------T---AT-----CTG-AATG---AAGTGAACTATTAC---------TC-ACG----TAATTCCTACA---TG-TGCCT--TTG--CTCTCGGGTATGAGAGGGGT--TCACACCTAAA-A-AA------------------AACCTCATCTAGGCACT-ATAGC--TATGCTGCAgaactattaggttggaagatagaatgtaattaaaaagtaattgaaatcttgaccttttagtaatgtatttgaatatatccaattatatgtaattgaaagatttgacaattacaaatgcatctaaatactttataaaatgaatttaaagcagctgattaccgttcaatctt
gi|19 : T-G-TAA-T-TCATAAGTCTCA----ATTGCTTT-GAAAA-TGT-----A-----ATTAAAT-GT--AT-TT-CAATTG---AAGTTTAT-----T--CAAA-ATGTCTT-GGAAGA------C------TC-------GCTTTGATTTG----TCTTCA---TTGTTT------ATGAGGATTTTGCTA---ACAC---G--------------------TAAACTGCGT-TTCC--T--G--GCGT--GGAATACATACAT-----TA----ATT----T-T----AA----t
gi|2 : acaattacattgatttaaagaaaaaAA-T-GT-AA----TTA----ATTACTTTTGAAGAATAT-----A-----ATTAAAT-AC--AT-TT-CATTTAATGATGTTTATT----T--TAAA-
gi|8 : tttcaattgtattgatgtttctttcaattacttgctatgataattacattgattttaacc----TCA----ATTACTTT-GTAAATTGC-----A-----ATCAA---ATTTAT-TT-CAATTAAAAAAATT-ATT----T--CAAA-ATGTCTT-GGAAGAGTTAGACTTGACCTCGAAACCTGGTTTGATTTG----TTT---AG--TTTTT------GAGA--A-------------------ACT------TTG-------CTA-ATG-CGT-TTCC--T--GCGACGTG-GAACTTCATACAG-----TAGTACATT----T-T----AAATAAG-TCATG-TT---------------T-----------TG------------TTTAAT-----TCTGAATA---AAATAAACTCTTAC---------TC-G-G----GTATTTT----ATCTCCTGCCCAATTG--TGTTCAGGTAAGAGAGGAGG--TCACACCTTAACA------------------TATAGCC----CTGGGCACT-CGGGC--CATGCTGCAcaccttgagcacatacatatacaaacaaagcaatgcaatcttatttcacaatttcgagcttatttccatcaaatactcgtagattcgaagtgtttgcatctggctttaaaatttccagatgcttttttcgtgacttaaaatttacccactgcatttgaagccatgttcagttaacgttctgagtatagtgtctgaatgaagtaacctttatttctacgtgcgcttttgttctcagacgtgagaggggttcacacttgaacaaaattagaccttgacctaaagccctaggcacgttgtccatgctgcatctcgtatacaaacataccccatgacaatcagtgacacatcattatcagacattttcattccatcattttcaaatttatagtataaagattttgattataaaataattgaaatgtgaaaaaacccttgactttcttggaatgtattaaacttgaaatggaaagcaaagtcaattacaaatacattcaattactttataaaaatgaatttaaatgcagctaattacaattacattttcaatgatcctatccctggctcatatgta
gi|7 : gcaatttaattaaaaagtacctttatgaatttgtcaattactcgctcttacaattacaataatttaaaaaaaatgtaattaataagtcGACCTCGAAGCCTGCTTCGATTCA----TCTTCACGCttaagaa
gi|31 : ACCTCGAGGCCTGCTTTGATTCG----TTTTCAGACGTTTTG------AGGA--ATTCTGCTAAA-ATAT---GGCT------TTG---------AAATT-TCtttcatgttgagctctgattgtagtatctgaatgttgaagtgaactcttgcagatagttttcagtttttttctacctgtacctttgttttcaggtatgaggagtaatcacactttaacaaactatggacaccgtggccatgctgcaccaagtaccccaccagctatatagacatcataggacatttaatcattgcattaacacccaatgacaaacagtggaacagtctaataccattattatcaggctttcattccatcattttcaaactttttaagttcgaataattaagaatgcaattgaaaagtaactgaaatatttacttatcatgaacgtacatgtattcaaataaagcaaagtcaattacaaata
gi|2 : ttATCT---GGCT------TTAAAATTT-CCAGATG-CTT-TTTTCGT--G--ACTTA--AAATTTACCCAC-----TG---CATT----T-G----AA----G-CCATG-TTCAGTTAACGTTCT--G-----------AG------------T---ATAGTGTCTG-AATG---AAGTAACCT------------------------TTATTTCT---ACGTG-CGCTT--TTG--TTCTCAGACGTGAGAGGGGT--TCACACTTGAACA-AAAT-TAGACCTTGACCTAAAGCC----CTAGGCACG-TTGTC--CATGCTGCATCTCG------------TATA--CAAA-----------------------CAT---------ACCCCATG-ACA-ATCAGTGA----------------CAC-ATCATTATCAG-ACATTTTCAT----TCC---ATCATTTTCcactgtttt
gi|3 : tttcaattgtattgatgtttctttcaattacttgctatgataattacattgattttaaccaatgtaattaattacttttgaagaatataattaaatacatttcatttaatgatgtttattttaaacaccttgagcacatacatatacaaacaaagcaatgcaatcttatttcacaatttcgagcttatttccatcaaatactcgtagattcgaagtgtttgc-------CCAGATG-CTTATTTCG-T--G--ACTTA--AAATTTACCCAC-----TG---CATT----TGT----AA----G-CCATG-TTCAGGTTAACGTTGCTG-----------AG------------T---ATGTGG-CTG-AATG---AAGTGACCT---------------------------TTTTT-CTACGTG-CGCTT--TTGGTTTCTCAGACGTAAGAGGGGG--TCACACTTGA-CA-AAAATTAGACCTTGACCTAAAGCC----CTAGGCACG-TTGTC--CATGCTGCAT-CTG------------TATA--CAAACATAaaatttatagtataaagattttgattataaaataattgaaatgtgaaaaaacccttgactttcttggaatgtattaaacttgaaatggaaagcaaagtcaattacaaatacattcaattactttataaaaatgaatttaaatgcagctaattacaattacattttcaatgatcctatccctggctcatatgta
gi|14 : accaatgtaattatagattacttttgagaatatattaaatacttttcatttaattatgtttatttcaaacaccttgagcaacatatacatatacaacaacaaagcaatgcaatcttatttcacaattttgagcttatttccatcaaatactagtagaaattcgaagtgtttgcatttggtgttaaaatt--T--A--GCTTATGAAATTCATCTAG-----TA---CACT----T-TTTAAAA----G-T-ACG-TT---------------A-------------------------T---AT-----ATG-AATG---AAGTGCACTCTTAC---------TCTG-G----TTATTTTT-CTACCTG-TGCCT--ATG--TTCTCGGATATGAGAGGAGT--TGACACTTAATCA-AG---CT----------TATAGCG----CTAGAGACT-GTAGC--CATGCTGCATCAA--------------ATA--CA---------AGACATCTAATAATTGTA-TA-----A-ACCTGATG-A-A---CAGTGAAAC-GTCT-----TAT-ACCATTATTATCAG-AAAACGTCAT----GCC---ATCATTTTCcccatgacaatcagtgacacatcattatcagacatttcattccatccattttcaaatttatagtataaagattttgattataaaataattgaaatgtgaataaccctgactttcttggaatgtattaaacttgaaatggaaagcaaagtcaattacaaatacattcaattactttataaaaattaatttaaatgcagctaattacaatacatttttcaatgatcccatttct
gi|13 : agatatggaaattgaataatcctcatTATGAAATTCATCTAG-----TA---CACT----T-TTTAAAA----G-T-ACG-TT---------------A-------------------------T---AT-----ATG-AATG---AAGTGCACTCTTAC---------TCTG-G----TTATTTTT-CTACCTG-TGCCT--ATG--TTCTCGGATATGAGAGGAGT--TGACACTTAATCA-AG---CT----------TATAGCG----CTAGAGACT-GTAGC--CATGCTGCATCAA--------------ATA--CA---------AGACATCTAATAATTGTA-TA-----A-ACCTGATG-A-A---CAGTGAAAC-GTCT-----TAT-ACCATTATTATCAG-AAAACGTCAT----GCC---ATCATTTTCaa
gi|7 : tagatatggaaattgaataatcctcattagc---CATG----T-T----GA----G-CTCTGATT---------------GT----------AG------------T---AT-----CTG-AATGTTGAAGTGAACTCTTGCAGATAGTTTTC-A-G----TT-TTTTT-CTACCTG-TACCT--TTG--TTTTCAGGTAT--GAGGAGTAATCACACTTTAACA-AA---C-----------TA----------TGGACACC-GTGGC--CATGCTGCACCAAGTACCCCACCAGCTATA--TAGACATCATAGGACATTTAATCATTGCATTA-----ACACCCAATG-ACA-AACAGTGGAACAGTCTAA------TACCATTATTATCAG-GC--TTTCAT----TCC---ATCATTTTCaaaa
gi|5 : gacctcgaagcctgcttcgattcatcttcacgcttt-----------AA------------T---AT-----CTG-AATG---AAATGAACTTTCAC---------T--------------------ACCTG-TGCA-----G--T---CAGGTATGGAAAGGCT--TCACACATGAACACAA---T-------------CAGCC----CTT--CACTTATAGCACCCTGCTGTATAAAGCAGTCATG----TATA--TAGACATAAGGAAACATATAGTTATTACATCACATAAACACCCCATG-ACATACT-GTGAAACAGTCTAA------CACCATTATTATCAG-ACAATTTCATAATGTTC---ATCATTTTCaaactttttaagttcgaataattaagaatgcaattgaaaagtaactgaaatatttacttatcatgaacgtacatgtattcaaataaagcaaagtcaattacaaata
gi|15 : gaatat---AAGTGAACTGTTAC---------TC-C-G----GTATTTTT-CTACTTT-TTCCT--TTG--TTTTCAAGGATGA----AGT---CACACCTGAGTA-AA---CC----------TACAGCC----CTGAGCACT-GTGGC--CATGCTGCATCAAG------------TATAAATAGACATAATGAGACATATGATTATTGCATAA-----ACACCTCATG-GCA-A--------ATAGTATAACA------CCATT-TTCCTCGTACACACTCAT----TCC---ATCATTTTCaaatttttaaatctgaataaagaatgtaattgtaattgatactactaagtaattgagatgtacattgcaattgaaaatgcttaactttttatgtaatgtatttaaatacattcaattacttgaaattgaaagctaagttcaatacaattacatccaattactttataaaaatgtttcaaaatacagctaattacatttttttgttgctaccccatccctgcaacatacatatatctacagcacctgtatacatgtat
gi|30 : T--TTG--TTTTCAGGTCTGAACAGAGT--TCACATTTGAACA-AA---aagcttttaagtttacatatgttgatactagtaagtaatatgattgaaaagtaattgaaatcttgac
gi|1 : gtgatctttattaagtattAG------------TATT--TAGACACAGTGATACATCTAATCATTGCATTA-----CCACCTC---------------AAACAGTCGAA------CACCATTATTATTAG-AGACTTTCAT----TCC---ATTATTTTCattcaacctttgacttctaccctaggc
gi|29 : actgtacatcaaaacatgattccagtttatatttgttaaaaaaagaacaaaaaaaatgtccataggacatgaatgtcttgtgacaattgtaaatgccctcaattactttgaagaaggtaattttgatacatttcaattactgcagtttatttcaaaatgtcttgaaagacttgacttcgaagcctgctttgtctttaaactttttgagaaattctgctaaaaagatgacttagaaattttcatatttcttttctaatatatgacatttatccactagattttaattaagtcatgttgagttctaaatattctcctgtgtgaacgtcgcacctgaaaacccctatagcactgtggcGAGACATTTAATCATTGTACAA-----ACACCGTATG-ACA-AACAGTGAAACGGTCTAA------CACCATTATTATCTG-ACACTTTCAT----TCC---ATCAATTaaacttttaaatttgaataaagactgtacttgaaaagtaattgaaatattgacctttttatgaatgtaaagcaaagtcagtcacaaatacatccaattactttatgaaacgtactagtatttaaatgcaacttaaattaccccatctttgaccagctgtatgatgattcaagttcattatctctgtatatagcaaatgtatagatgatctctcatatcatttgatgtgttttcacaaagatggatttgaaagttaataaaa
10 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|18 ): TTGATCAGCAATATGATGCTTCAAGTTCATTTTTTCTTCGTGTAGAAAATTTATAAATGATCTCTCACATCATTTGATGTGTCTTCACAAAGATGTACTTGAACTTTAATAATCATATTAGGATAACAAACACAGTTTGTAATCCATATCCACGATGAAAACAGTTTTTAATTGGCATTTATTCAATGTGACTAACTGTGAC
Unaligned ( gi|21 ): CAATAATTCTGAAACAATCTAACACCATTATTAAATACTTTCATTCCATCATATTCAAACTTTTAAGTTTGAATAAAGAATACAATTGTATAAATGTATTTAAATACATTCAATTCCTTCTATTTAGAAGGAAAATCAATTACAAATACATCCAATTACTTTATGAA
Unaligned ( gi|23 ): ATTTTTAATTACCCCATCTTTGATCAGCAATGTGATGTTCCAAATTCATTTTCTCTGTATGTAGGAAATTTATAGATGATATCTCATATTATTTAACGTGTCTTCACAAAAATGTTTTTGAAAACTTATTAAAAAAACGTTTGTAA
Unaligned ( gi|24 ): ATACGTACTGAAATGCGGCTTATGACATTTTCAATTACTCCATCCTTGATCAGCAACATGTTTTAAACTTTTTCTAGAAAAATGCAGCAGATTTACAGATGACCTCACATCATTTGATGTGTCTTCACAAAA
Unaligned ( gi|25 ): AAATGTACATTTGTAAATGAAAAGTAATTGAAACCTTTAACTTTTTAATAAATGTATTTGAATACATTATATCCATTTAATTACTTATAATTAAAAGCTAAGTCAACCATAAATACATCCAGTTACTTTCT
Unaligned ( gi|26 ): AATGTACATTTGTAAATGAAAAGTAATTGAAACCTTTAACTTTTTAATAAATGTATTTGAATACATTATATCCATTTAATTACTTATAATTAAAAGCTAAGTCAACCATAAATACATCCAGTTACTTTCTA
Unaligned ( gi|27 ): ACACTGAAAATGTCTTACACCATTATTTTCCGACACTTCCAGTCTACCACTTTACAGGTGGAATAAAGAATATAATTGTAATCAAAAATGCATTGCTATTTAAGTAATTTATCTAGATACATTAAA
Unaligned ( gi|32 ): ATGCAACTTTAATTACAAGTACACCCAATTACTTTATAAGAATGTATTCAAATGCTGCTA
Unaligned ( gi|33 ): TGTAGCCGTGCCGCATCAAATATACAAACATATTAATTAGGACATCAAGTTATGGCT
Unaligned ( gi|35 ): AATACATCCAATTAATCAATTAAAATAGCCCGACCTT
Alignments
lowQualScore : 1111 11111 66666666666666666666666 111111 66666666666666666666666666666666666666666666666666666 3333333333333333333 444444444444444444 222222222222 1111111111 111111 11111111
lowQualScore : 777 2222 0 2 3 2 2 11111 0 5555 2 2 2 44 1 2 2 33 1 3 44 888888 6666 2 6666 555 2 44 3 00000000000000000000000 1 3 66 44444 1 1 33 6666 444 5555 333333 6666 3 2 3 33333333333333333333333333333333333333333333333333333 555 0 5555555555555555555 3 3 22 33 2 0 33 2 444444444444444444 33 44 2 33 666666666666 44 2 0 0000000000 0 000000 9999 99999999 5 0 888888 2 6666 555 3
lowQualScore : ... .... . . . . . ..... . .... . . . .. . . . .. . . .. ...... .... . .... ... . .. . ....................... . . .. ..... . . .. .... ... .... ...... .... . . . ..................................................... ... . ................... . . .. .. . . .. . .................. .. .. . .. ............ .. . . .......... . ...... .... ........ . . ...... . .... ... .
lowQualScore : 000 7777 7 4 3 4 4 88888 3 3333 5 5 5 44 5 7 7 77 1 6 22 888888 1111 9 1111 000 9 22 1 77777777777777777777777 0 1 88 77777 0 8 44 2222 777 7777 333333 1111 1 8 1 22222222222222222222222222222222222222222222222222222 000 2 6666666666666666666 1 1 99 77 9 4 99 9 777777777777777777 44 33 9 99 999999999999 66 9 4 4444444444 2 333333 2222 77777777 4 7 888888 1 5555 444 1
consensus : ACAAATATGTCCATAGGACATGAA---TGC---CCCGCCCNTGT-GACAATT-G-TAATT-----GCTCTCA----ATTACTTT-G-AAGAATGTA-ATTA-AATACAT-TT-C--AATTACTGAAGTTTATTTCAAAATGTCTT--GGAAGA------CTTGACCTCGAAGCCTGCTTTGATTCG----TCTTCAAGC-TTT----T---T-GAGGAA--TTCTGCTAAAA-AT-ATGGCT------TTG-------CCAGATGCNT-TTTC--T--G--GCATATGAAATTCATC--CA-G--TA---CATT----T-T----AA----G-TCATG-TT---------------G-A-----------G------------T---AT-----CTGAATG---AAGTGAACTCTTAC---------TC-G-GTTATTTT-T-CTACCT-GTGCCTTTG--TTCTCGGGTATGAGAGGGGT--TCACACCTGAACAA-A--------------C-T-ATAGCCCTG-GGCACT-GTGGC--CATGCTGCATCAAG------------TAT--ATAGACATAATGA----GACATCTAAT-----CATTGCATAAACACCCCATG-AC-A-A-CAGTGAAACAGTCTAA------CACCATTATTATCAGACACTTTCAT----TCC---AT-CATTTTC
Reference ( family-1089 ) : ACAAATATGTCCATAGGACATGAA---TGC---CCCGCCCNTGT-GACAATT-G-TAATT-----GCTCTCA----ATTACTTT-G-AAGAATGTA-ATTA-AATACAT-TT-C--AATTACTGAAGTTTATNTCAAAATGTCTT--GGAAGA------CTTGACCTCGAAGCCTGCTTTGATTCG----TCTTCAAGC-TTT----T---T-GAGGAA--TTCTGCTAAAA-AT-ATGGCT------TTG-------CCAGATGCNT-TTTC--T--G--GCNTATGAAATTCATC--CA-G--TA---CATT----T-T----AA----G-TCATG-TT---------------G-A-----------G------------T---AT-----CTGAATG---AAGTGAACTCTTAC---------TC-G-GTTATTTT-T-CTACCT-GTGCCTTTG--TTCTCGGGTATGAGAGGGGT--TCACACCTGAACAA-A--------------C-T-ATAGCCCTG-GGCACT-GTGGC--CATGCTGCATCAAG------------TAT--ATAGACATAATGA----GACATCTAAT-----CATTGCATNAACACCCCATG-AC-A-A-CAGTGAAACAGTCTAA------CACCATTATTATCAGACACTTTCAT----TCC---AT-CATTTTC
gi|1 : AAAAATGTCCATAGGACATGAA---TGT---C------TTGT-GACAATT-G-TAAAT-----GCCCTCA----ATTACTTT-G-AAGAAGGTA-ATTTTGATACAT-TT-C--AATTACTGCAGTTTATTTCAAAATGTCTT--GAAAGA------CTTGACTTCGAAGCCTGCTTT-----G----TCTTTAAAC-TTT----T---T-GAGAAA--TTCTGCTAAAA-AG-ATGACTTAGAAATTT-------TCATATTTCT-TTTC--T--A--ATATATGACATTTATC--CA-C--TA---GATTTTAAT-T----AA----G-TCATG-TT---------------G-A-----------G------------T----T-----CTAAAT
gi|1 : actgtacatcaaaacatgattccagtttatatttgttaaaaaaagaacaaaTA--TTCTCCTGTGTGAACG------TCGCACCTGAA--A-A--------------C-------CCCTATAGCACT-GTGGC--------------AG------------TAT--TTAGACACAGTGA----TACATCTAAT-----CATTGCATTACCACCTC----------------AAACAGTCGAA------CACCATTATTATTAGAGACTTTCAT----TCC---AT-TATTTTCattctcctgtgtgaacgtcgcacctgaaaacccctatagcactgtggcagtatttagacacagtgatacatctaatcattgcattaccacctcaaacagtcgaacaccattattattagagactttcattccattattttcaaacttttaaatttgaataaagactgtacttgaaaagtaattgaaatattgacctttttatgaatgtaaagcaaagtcagtcacaaatacatccaattactttatgaaacgtactagtatttaaatgcaacttaaattaccccatctttgaccagctgtatgatgattcaagttcattatctctgtatatagcaaatgtatagatgatctctcatatcatttgatgtgttttcacaaagatggatttgaaagttaataaaa
gi|10 : actgtacatcaaaacatgattccagtttatatttgttaaaaaaagaacaaaaaaaatgtccataggacatgaatgtcttgtgacaattgtaaatgccctcaattactttgaagaaggtaattttgatacatttcaattactgcagtttatttcaaaatgtcttgaaagacttgacttcgaagcctgctttgtctttaaactttttgagaaattctgctaaaaagatgacttagaaattttcatatttcttttctaatatatgacatttatccactagattttaattaagtcatgttgagttctaaaAAATGTATCCATAGGACCTAAA---CGC---CCCGC--TTGT-GACAGTT-G-TAATT-----GCTCTTATACTAGTACTTT-G-AAGAAAGTA-ATT-------------------T-CTGAAGTTTATATCAAAATATCTT--GGAAGA------CTTGACCTCGAAGCTTGCTTTGATTTG----ACTTCAAGCTTTT----T---T-GAGAAA--TTCTGCTATAA-AT-ATGGCTTCCAAATTT-------CCAGATTCCT-TTTC--T--A--GCATATGAATTTCATC--CA-G--TA---CATT----T-T----AA----G-TCATG-TT---------------G-A-----------GTTCTGAATATGAT---AT-----CTGAATG----AGCGAACTCTTAC---------TCAG-GTT-TTTT-T-TAATCT--TGTCTTTG--ATCTCAAATATGAGAGaaacttttaaatttgaataaagactgtacttgaaaagtaattgaaatattgacctttttatgaatgtaaagcaaagtcagtcacaaatacatccaattactttatgaaacgtactagtatttaaatgcaacttaaattaccccatctttgaccagctgtatgatgattcaagttcattatctctgtatatagcaaatgtatagatgatctctcatatcatttgatgtgttttcacaaagatggatttgaaagttaataaaa
gi|11 : gaatgatgctaccgctctgaaagatggtgatcgctagT-G-TAGTT-----GCTCTCA----ATTACT-----------ATA-ATTA-GATACAT-TT-C--GATAATTGATTTCTATTACAAAATGTCTT--GAAAGA------CTTGACCTCGAAGCCTGCTTTAATTCA----TCTTCAAAC-TTT----T---T-GAGGAA--TTTTGCTGAAACATTAAGG-T------TTGAAATTT-TCAGATGCAT-TTTC--T--A--CCTTCTGAAATTCATC--CA-G--TA---CAAA----T-C----AA----G-TAATT-TT---------------G-ATTCTGAATGAAA------------T---AT-----CTGAATG---AAGTGAACTATTAC---------TC-ACGTAATTC----CTACAT-GTGCCTTTG--CTCTCGGGTATGAGAGGGGT--TCACACCTAAAAAA-AAC------------C-TCAT----CTA-GGCACT-ATAGC--TATGCTGCAT
gi|12 : ACAACTAGG--CACAGGACATGAT---T------TTGCCTTTGT-GACAATT-G-TAATT-----GCTCTCA----ATCACTTT-T-AAGAATGTACATTT-AAT---T-TT-AGAAAATACT--------TTTCAAC-TG-CTTCCGGAAGA------CTTGACCTCGAATCCTGCTTTGAA-AG----TCTCCAAGA-ATT----T---T-GAGGAA--TTCTGCTAAA---T-AT--------------------CCATATTCCT-TTAT--T--A--GCATATGAAATTAATC--CA-G--TT---TATT----T-C----AA----G-TCATG-CT---------------G-A-----------G------------T----T-----CTGACTG---
gi|13 : actgcatagataaataatgcttctgttaaatattgttaaaaagatatatcTATGAAATTCATC--TA-G--TA---CACT----T-TTTAAAA----G-T-ACG-TT---------------A--------------------------T---AT-----ATGAATG---AAGTGCACTCTTAC---------TCTG-GTTATTTT-T-CTACCT-GTGCCTATG--TTCTCGGATATGAGAGGAGT--TGACACTTAATCAA-G--------------CTT-ATAGCGCTA-GAGACT-GTAGC--CATGCTGCATCAAA------------TAC--A-----------A----GACATCTAAT-----AATTGTATAA--ACCTGATG----A-A-CAGTGAAAC-GTCTTA------TACCATTATTATCAGAAAACGTCAT----GCC---AT-CATTTTCtaatttatgaatgaag
gi|14 : tagatatggaaattgaataatcctcattagc--T--A--GCTTATGAAATTCATC--TA-G--TA---CACT----T-TTTAAAA----G-T-ACG-TT---------------A--------------------------T---AT-----ATGAATG---AAGTGCACTCTTAC---------TCTG-GTTATTTT-T-CTACCT-GTGCCTATG--TTCTCGGATATGAGAGGAGT--TGACACTTAATCAA-G--------------CTT-ATAGCGCTA-GAGACT-GTAGC--CATGCTGCATCAAA------------TAC--A-----------A----GACATCTAAT-----AATTGTATAA--ACCTGATG----A-A-CAGTGAAAC-GTCTTA------TACCATTATTATCAGAAAACGTCAT----GCC---AT-CATTTTCaaaa
gi|15 : agatatggaaattgaataatcctcat---AAGTGAACTGTTAC---------TC-C-GGTATTTT-T-CTACTT-TTTCCTTTG--TTTTCAAGGATGA-AG------TCACACCTGAGTAA-A--------------CCT-ACAGCCCTG-AGCACT-GTGGC--CATGCTGCATCAAG------------TATAAATAGACATAATGA----GACATATGAT-----TATTGCATAAACACCTCATG-GC----------AAATAGTATAA------CACCATTTTCCTCGTACACACTCAT----TCC---AT-CATTTTCaa
gi|16 : AAATAAGCCCATAGGACATGAA---TGC---CCTGCCCATGT-GACAATC-A-TAATT-----GCTTTTA----ATTACTTT-G-AGGACTGTA-ATTA-AATACAT-TT-C--AATCACTGAAGTTTATTTCAAAACGTCTT--GAAAGA------CTTTACCTCAAAGCCTGCTTTGATTCA----CCTTTAAAC--TT----T---T-GAGGAA--TTCTGCTAAAA-AT-TTGAAA------TTT-------CCAGATGCAT-TTTC--T--G--GGATATGAAATTCATC--CA-G--TA---CATT----aagcttttaagtttacatatgttgatactagtaagtaatatgattgaaaagtaattgaaatcttgac
gi|17 : agaactagTGTGTCCATAGGACCTGAA---TG--------------T-GA-AATC-----ACT-----GCTCTCA----ATTACTTT-G-AAGAAAGTA-ATTA-AATACAT-TT-C--AATTACCAAAGTTTAATTC-AAATGTCTT--GGAAGG------TTTGACCCCAAAGGCTGCTTTGATTCGATCATCTTCAAGC-TTT----TAGGTAGAGGAA--TTCTGC-AAAA-AT-TTGGCT------TTGAAAATTTTCAGATGCAT-TTTC--TCAG--ACA-ATGATGTTCATT--CA-
gi|19 : -GAAAAAT-G-TAATTCATAAG-TCTCA----ATTGCTTT-G-AA-AATGTA-ATTA-AATGTAT-TT-C--AAT---TGAAGTTTAT-TCAAAATGTCTT--GGAAGA------CT-------------CGCTTTGATTTG----TCTTCATTG-TTT----A---T-GAGG-A--TTTTGCTAACA-----------------CG-------TAAACTGCGT-TTCC--T--G--GCG--TGGAATACATA--CA-T--TA----ATT----T-T----AA----
gi|2 : acaattacattgatttaaaCAAT--G-TAATT-----------A----ATTACTTTTG-AAGAATATA-ATTA-AATACAT-TT-C--ATTTAATGATGTTTATTTTAAA
gi|2 : tttcaattgtattgatgtttctttcaattacttgctatgataattacattgattttaac-AT-CTGGCT------TTAAAATTT-CCAGATGCTT-TTTTCGT--G--ACTTA--AAATTTACC--CA-C--TG---CATT----T-G----AA----G-CCATG-TTCAGTTAACGTTCT--G-A-----------G------------T---ATAGTGTCTGAATG---AAGT-AACCTTTA---------------------TT-T-CTACGT-GCGCTTTTG--TTCTCAGACGTGAGAGGGGT--TCACACTTGAACAA-AATTAGACCTTGAC-C-T-AAAGCCCTA-GGCACG-TTGTC--CATGCTGCATCTCG------------TAT--ACAAA--------------------------------CAT----ACCCCATG-AC-A-ATCAGTGA----------------CAC-ATCATTATCAGACATTTTCAT----TCC---AT-CATTTTCcaccttgagcacatacatatacaaacaaagcaatgcaatcttatttcacaatttcgagcttatttccatcaaatactcgtagattcgaagtgtttgcatctggctttaaaatttccagatgcttttttcgtgacttaaaatttacccactgcatttgaagccatgttcagttaacgttctgagtatagtgtctgaatgaagtaacctttatttctacgtgcgcttttgttctcagacgtgagaggggttcacacttgaacaaaattagaccttgacctaaagccctaggcacgttgtccatgctgcatctcgtatacaaacataccccatgacaatcagtgacacatcattatcagacattttcattccatcattttcaaatttatagtataaagattttgattataaaataattgaaatgtgaaaaaacccttgactttcttggaatgtattaaacttgaaatggaaagcaaagtcaattacaaatacattcaattactttataaaaatgaatttaaatgcagctaattacaattacattttcaatgatcctatccctggctcatatgta
gi|20 : tttcaattgtattgatgtttctttcaattacttgctatgataattacattgattttaaccaatgtaattaattacttttgaagaatataattaaatacatttcatttaatgatgtttattttaaacaccttgagcacatacatatacaaacaaagcaatgcaatcttatttcacaatttcgagcttatttccatcaaatactcgtagattcgaagtgtttgc-GACAATTTG-TAATT-----GCTCTCA----ATCTCTTT-G-AAGAATGTA-ATT-------------------TACTAAAGTTCATGTCAATATGATTT--TGAAGA------CTTGACTTCGAAGTTTGCTGTAA-TAG----TCTCCAAGC-TTG----T---A-GACGAAGTTTTTG-TAAaaatttatagtataaagattttgattataaaataattgaaatgtgaaaaaacccttgactttcttggaatgtattaaacttgaaatggaaagcaaagtcaattacaaatacattcaattactttataaaaatgaatttaaatgcagctaattacaattacattttcaatgatcctatccctggctcatatgta
gi|21 : aaactagaaataagtccacagTGAAACAATCTAA------CACCATTATTA---AATACTTTCAT----TCC---AT-CATATTCttacttccatagctttctc
gi|22 : caataattcAATTTGTCCATAT-ATATGAAAATTGAAAACCCACCCATGTTGATA-TT-G-TAATT-----GCTCTCA----ATTACTTT-G-AAGAGTGTG-ATTA-AATGCAT-TT-C--AATTACTGAAGTTTATTTAAATATGTCTT--GGAAGA-------TTGACCTCAAAATCTGCTTTGATTaaacttttaagtttgaataaagaatacaattgtataaatgtatttaaatacattcaattccttctatttagaaggaaaatcaattacaaatacatccaattactttatgaa
gi|27 : aactagg-A-CACTGAAAATGTCTTA------CACCATTATTTTCCGACACTTCCAG----TCT---AC-CACTTT
gi|28 : AAATATGTCCATAAGACAGAAA---TGC---CCCACCCTTGT-GACAATT-ATTAATT-----GCacaggtggaataaagaatataattgtaatcaaaaatgcattgctatttaagtaatttatctagatacattaaa
gi|29 : cttgacttaccttatgaattctctatattgtgttcaaactagGA----GACATTTAAT-----CATTGTACAAACACCGTATG-AC-A-AACAGTGAAACGGTCTAA------CACCATTATTATCTGACACTTTCAT----TCC---AT-CAATT
gi|3 : CAAT--G-TAATT-----A---TAG----ATTACTTT-T-GAGAATATA--TTA-AATACTT-TT-C--ATTTAATTATGTTTATTTCAAA
gi|3 : ac-------CCAGATGCTTATTTCG-T--G--ACTTA--AAATTTACC--CA-C--TG---CATT----TGT----AA----G-CCATG-TTCAGGTTAACGTTGCTG-A-----------G------------T---ATGTGG-CTGAATG---AAGTGACCT-----------------------TTTT-T-CTACGT-GCGCTTTTGGTTTCTCAGACGTAAGAGGGGG--TCACACTTGA-CAA-AAATTAGACCTTGACC-T-AAAGCCCTA-GGCACG-TTGTC--CATGCTGCATC---------------TGT--AT----------------ACA---AA-----------CATA-----CCCATG-AC-A-ATCAGTGA----------------CAC-ATCATTATCAGACA-TTTCAT----TCC---ATCCATTTTCcaccttgagcaacatatacatatacaacaacaaagcaatgcaatcttatttcacaattttgagcttatttccatcaaatactagtagaaattcgaagtgtttgcatttggtgttaaaattccagatgcttatttcgtgacttaaaatttacccactgcatttgtaagccatgttcaggttaacgttgctgagtatgtggctgaatgaagtgaccttttttctacgtgcgcttttggtttctcagacgtaagagggggtcacacttgacaaaaattagaccttgacctaaagccctaggcacgttgtccatgctgcatctgtatacaaacatacccatgacaatcagtgacacatcattatcagacatttcattccatccattttcaaatttatagtataaagattttgattataaaataattgaaatgtgaataaccctgactttcttggaatgtattaaacttgaaatggaaagcaaagtcaattacaaatacattcaattactttataaaaattaatttaaatgcagctaattacaatacatttttcaatgatcccatttct
gi|30 : accaatgtaattatagattacttttgagaatatattaaatacttttcatttaattatgtttatttcaaacaccttgagcaacatatacatatacaacaacaaagcaatgcaatcttatttcacaattttgagcttatttccatcaaatactagtagaaattcgaagtgtttgcatttggtgttaaaatt-GTATTTTTG--TTTTCAGGTCTGAACAGAGT--TCACATTTGAACAA-A--------------aaatttatagtataaagattttgattataaaataattgaaatgtgaataaccctgactttcttggaatgtattaaacttgaaatggaaagcaaagtcaattacaaatacattcaattactttataaaaattaatttaaatgcagctaattacaatacatttttcaatgatcccatttct
gi|31 : gtgatctttattaaACCTCGAGGCCTGCTTTGATTCG----TTTTCAGAC-GTT----T---T-GAGGAA--TTCTGCT-AAA-AT-ATGGCT------TTG-------attcaacctttgacttctaccctaggc
gi|32 : ttAATT-A-CAAGT-----ACACCCA----ATTACTTT-ATAAGAATGTA-TTCA-AATGCaaatttccactgtttt
gi|33 : atgcaactttT-GTAGC--CGTGCCGCATCAAA------------TAT--ACAAACATATTAATTAGGACATCAAGT-----TATGGCtgcta
gi|34 : AAATATGTCCGAAGGACATGAA---TGC---CCCACCCTTGT-Gt
gi|4 : acagaataaaaccaaactagATT-G-TAATT-----GCTCTCA----ATTACTTT-G-AAGACTGTA-ATCA-AATACAT-TT-C--AATTACTGC--TTTATTTCAGAATGTCTT--GGAAGA------CTTGACCTTGAAGCCTGCTCTGATTCA----TCTTCATGA-TTG----T---T-GAGTAT--TTCTGCTAAAA-GT--TGACT------T----------CAGA---AT-TTTC--T--A--AAATGTTCAGGTC-TC--TA----TA---TAT-------------A----GCTAATG-T------------------A-----------T------------T---GT-----TTGAATA---AAGTGAACTCTTAA---------TCAG-GAGGTTGT-T-CTACCCCGTGTCTTTG--TTCTTTGATATGAGAGGGGT--TCACTCCTGAACAA-A--------------C-TTATTGCCCTT-GGCACT-GGGGT--CATGCTCCACCAAA------------AAT--ATAGACATAATAA----GACATCTCAT-----TAATGCATAAATACACCATGTGT-A-A-CACTGAAATAGTTTA-------CACCATTATCATCAGACACTTTCAT----TAC---AT-CATTGTC
gi|5 : -A-----------A------------T---AT-----CTGAATG---AAATGAACTTTCAC---------T-----------------ACCT-GTGCA---G--T---CAGGTATGGAAAGGCT--TCACACATGAACAC-A--------------A-T--CAGCCCTT---CACTTATAGCACCCTGCTGTATAAAGCAGTCATG----TAT--ATAGACATAAGGA----AACATATAGTTATTACATCACATAAACACCCCATG-AC-ATA-CTGTGAAACAGTCTAA------CACCATTATTATCAGACAATTTCATAATGTTC---AT-CATTTTCgaactattaggttggaagatagaatgtaattaaaaagtaattgaaatcttgaccttttagtaatgtatttgaatatatccaattatatgtaattgaaagatttgacaattacaaatgcatctaaatactttataaaatgaatttaaagcagctgattaccgttcaatctt
gi|6 : gaatatACAAATATGTCCGTAGGACATGAA---TGG---CTTGCCCGTGA-GACAGTT-G-TAAT------GCTATCA----ATTACTTT-A-AAAAATGTA-AT------ACAT-TT-C--AATTGCTGAAGTTTATATCAAAATGTTTT--GGAAAA------CATGACCTCAAAGCCTGCTTTGATTCG----TCTTCAAGC-ATC----T---T-TAGGAA--TTCTACTAAAG-AT-ATGGCT------TTG-------CCAGATTCCT-TTTC--T--G--GCATACGAAATTCGTC--CA-G--TA---CATT----T-T----AA----G-TCATG-TT---------------G-A-----------G------------T---AT-----CCCAATG---AAGTGAACTCTTAC---------TC-A-ATTATTTT-TGCAACCT-ATGCCTTTG--TTCTCGGGTATGAGAGGAGT--TCACATCTGAACAA-A--------------TAT-ATAGCCCTG-GGTACT-ATGGT--CATGCTGCAGAAAG------------TAT--ACAGACATAAGGA----GACGTCTAAT-----CATTGCATTAACACCTCATG-AC-A-ACCAGTGAAATAGTCTAACAACATCACCATTATTATCCGACTTTTTCAT----TCCCGGAT-CATTTTCaaatttttaaatctgaataaagaatgtaattgtaattgatactactaagtaattgagatgtacattgcaattgaaaatgcttaactttttatgtaatgtatttaaatacattcaattacttgaaattgaaagctaagttcaatacaattacatccaattactttataaaaatgtttcaaaatacagctaattacatttttttgttgctaccccatccctgcaacatacatatatctacagcacctgtatacatgtat
gi|7 : GACCTCGAAGCCTGCTTCGATTCA----TCTTCACGC-TTTCATGT---T-GAG
gi|7 : ATTCATCTTCACGCTTT---CATG----T-T----GA----G-CTCTGATT---------------GTA-----------G------------T---AT-----CTGAATGTTGAAGTGAACTCTTGCAGATAGTTTTC-A-GTT-TTTT-T-CTACCT-GTACCTTTG--TTTTCAGGTAT--GAGGAGTAATCACACTTTAACAA-A--------------C-T-A------TG-GACACC-GTGGC--CATGCTGCACCAAGTACCCCACCAGCTAT--ATAGACATCATAG----GACATTTAAT-----CATTGCATTAACACCCAATG-ACAA-A-CAGTGGAACAGTCTAA------TACCATTATTATCAG--GCTTTCAT----TCC---AT-CATTTTCctctgattgtagtatctgaatgttgaagtgaactcttgcagatagttttcagtttttttctacctgtacctttgttttcaggtatgaggagtaatcacactttaacaaactatggacaccgtggccatgctgcaccaagtaccccaccagctatatagacatcataggacatttaatcattgcattaacacccaatgacaaacagtggaacagtctaataccattattatcaggctttcattccatcattttcaaactttttaagttcgaataattaagaatgcaattgaaaagtaactgaaatatttacttatcatgaacgtacatgtattcaaataaagcaaagtcaattacaaata
gi|8 : gacctcgaagcctgcttcgAAAT-G-TAATTAATAAG-TCTCA----ATTACTTT-G-TAAATTGCA-ATCA-AATTTAT-TT-C--AATTAAAAAAATT-ATTTCAAAATGTCTT--GGAAGAGTTAGACTTGACCTCGAAACCTGGTTTGATTTG----TTT---AG--TTT----T---T-GAGAAA--CTTTGCTAA---------------------------------TGCGT-TTCC--T--GCGACGTG-GAACTTCATA--CA-G--TAGTACATT----T-T----AAATAAG-TCATG-TT---------------T-T-----------G------------TTTAATT----CTGAATA---AAATAAACTCTTAC---------TC-G-GGTATTTTAT-CT-CCT-GCCCAATTG--TGTTCAGGTAAGAGAGGAGG--TCACACCTTAACA-------------------T-ATAGCCCTG-GGCACT-CGGGC--CATGCTGCATTAAG------------aaactttttaagttcgaataattaagaatgcaattgaaaagtaactgaaatatttacttatcatgaacgtacatgtattcaaataaagcaaagtcaattacaaata
gi|9 : gcaatttaattaaaaagtacctttatgaatttgtcaattactcgctcttacaattacaataatttaaaaaAA---TGT---CCCGCCCATTT-GAAAATT-G-TAATT-----GCTATCA----ATTACTTT-G-AAGAATGTA-TTTA-AATACATATTGC--AATTACTGAAGTTTATTTCAAAATATCTT--GGAAGA------CGT--TCTTGAAGCCTGCTTTGATTCA----TCTTCAAGC-TTC----T---T-GAGGAA--TTCTGCTAAAA-AT-------------TT--------CCAGATGCAT-TATC--T--G--AGACATGAAATTCATC--CC-G--TA---CATT----T-G----AA----G-ACAAG-TT---------------G-A-----------G------------T---AT-----CTGAATG---AATAGAACTCTTA-------------G-GTATTTTT-T-CTACCT-----------------AGATATGAGATGGGT--TCATACCTAAATAATG--------------C-T-ATAGCCCTG-GGCACT-GTGGC--CATGCTGCATCAAG------------TAT--ATAGACATAATGA----GACATCTGAT-----TATaa
6 sequences could not be aligned to this reference sequence:
Unaligned ( gi|18 ): TTGATCAGCAATATGATGCTTCAAGTTCATTTTTTCTTCGTGTAGAAAATTTATAAATGATCTCTCACATCATTTGATGTGTCTTCACAAAGATGTACTTGAACTTTAATAATCATATTAGGATAACAAACACAGTTTGTAATCCATATCCACGATGAAAACAGTTTTTAATTGGCATTTATTCAATGTGACTAACTGTGAC
Unaligned ( gi|23 ): ATTTTTAATTACCCCATCTTTGATCAGCAATGTGATGTTCCAAATTCATTTTCTCTGTATGTAGGAAATTTATAGATGATATCTCATATTATTTAACGTGTCTTCACAAAAATGTTTTTGAAAACTTATTAAAAAAACGTTTGTAA
Unaligned ( gi|24 ): ATACGTACTGAAATGCGGCTTATGACATTTTCAATTACTCCATCCTTGATCAGCAACATGTTTTAAACTTTTTCTAGAAAAATGCAGCAGATTTACAGATGACCTCACATCATTTGATGTGTCTTCACAAAA
Unaligned ( gi|25 ): AAATGTACATTTGTAAATGAAAAGTAATTGAAACCTTTAACTTTTTAATAAATGTATTTGAATACATTATATCCATTTAATTACTTATAATTAAAAGCTAAGTCAACCATAAATACATCCAGTTACTTTCT
Unaligned ( gi|26 ): AATGTACATTTGTAAATGAAAAGTAATTGAAACCTTTAACTTTTTAATAAATGTATTTGAATACATTATATCCATTTAATTACTTATAATTAAAAGCTAAGTCAACCATAAATACATCCAGTTACTTTCTA
Unaligned ( gi|35 ): AATACATCCAATTAATCAATTAAAATAGCCCGACCTT
Alignments
lowQualScore : 1111 11111 66666666666666666666666666666 111111 66666666666666666666666666666666666666666666666666666 3333333333333333333 444444444444444444 222222222222 1111111111 111111 11111111
lowQualScore : 777 2222 0 2 3 2 2 11111 0 5555 2 2 2 44 1 2 2 33 1 44 888888 6666 2 6666 555 2 44 3 00000000000000000000000000000 1 3 66 33 0 1 2 33 6666 444 999999 6666 3 2 3 33333333333333333333333333333333333333333333333333333 555 0 5555555555555555555 3 3 22 33 2 0 33 2 444444444444444444 33 44 2 33 666666666666 44 2 0 0000000000 0 000000 77 99999999 5 0 888888 2 6666 555 3
lowQualScore : ... .... . . . . . ..... . .... . . . .. . . . .. . .. ...... .... . .... ... . .. . ............................. . . .. .. . . . .. .... ... ...... .... . . . ..................................................... ... . ................... . . .. .. . . .. . .................. .. .. . .. ............ .. . . .......... . ...... .. ........ . . ...... . .... ... .
lowQualScore : 000 7777 7 4 3 4 4 88888 3 3333 5 5 5 44 5 7 7 77 1 22 888888 1111 9 1111 000 9 22 1 77777777777777777777777777777 0 1 88 99 4 9 5 44 2222 777 444444 1111 1 8 1 22222222222222222222222222222222222222222222222222222 000 2 6666666666666666666 1 1 99 77 9 4 99 9 777777777777777777 44 33 9 99 999999999999 66 9 4 4444444444 2 333333 00 77777777 4 7 888888 1 5555 444 1
consensus : ACAAATATGTCCATAGGACATGAA---TGC---CCCGCCCNTGT-GACAATT-G-TAATT-----GCTCTCA----ATTACTTT-G-AAGAATGTA-ATTA-AATACAT-TT-C--AATTACTGAAGTTTATTTCAAAATGTCTT--GGAAGA------CTTGACCTCGAAGCCTGCTTTGATTCG----TCTTCAAGC-TTT----T---T-GAGGAA--TTCTGCTAAAA-AT-ATGGCT------T------TG-------CCAGATGCNT-TTTC--T--GGCATATGAAA-TTCATC--CA-G--TA---CATTT-T----AA----G-TCATG-TT---------------G-A-----------G------------T---AT-----CTGAATG---AAGTGAACTCTTAC---------TC-G-GTTATTTT-T-CTACCT-GTGCCTTTG--TTCTCGGGTATGAGAGGGGT--TCACACCTGAACAA-A--------------C-T-ATAGCCCTG-GGCACT-GTGGC--CATGCTGCATCAAG------------TAT--ATAGACATAATGA----GACATCTAAT-----CATTGCATAAACACCCCATG-AC-A-A-CAGTGAAACAGTCTAA------CACCATTATTATCAGACACTTTCAT----TCC---AT-CATTTTC
Reference ( family-1089 ) : ACAAATATGTCCATAGGACATGAA---TGC---CCCGCCCNTGT-GACAATT-G-TAATT-----GCTCTCA----ATTACTTT-G-AAGAATGTA-ATTA-AATACAT-TT-C--AATTACTGAAGTTTATTTCAAAATGTCTT--GGAAGA------CTTGACCTCGAAGCCTGCTTTGATTCG----TCTTCAAGC-TTT----T---T-GAGGAA--TTCTGCTAAAA-AT-ATGGCT------T------TG-------CCAGATGCNT-TTTC--T--GGCATATGAAA-TTCATC--CA-G--TA---CATTT-T----AA----G-TCATG-TT---------------G-A-----------G------------T---AT-----CTGAATG---AAGTGAACTCTTAC---------TC-G-GTTATTTT-T-CTACCT-GTGCCTTTG--TTCTCGGGTATGAGAGGGGT--TCACACCTGAACAA-A--------------C-T-ATAGCCCTG-GGCACT-GTGGC--CATGCTGCATCAAG------------TAT--ATAGACATAATGA----GACATCTAAT-----CATTGCATAAACACCCCATG-AC-A-A-CAGTGAAACAGTCTAA------CACCATTATTATCAGACACTTTCAT----TCC---AT-CATTTTC
gi|1 : AAAAATGTCCATAGGACATGAA---TGT---C------TTGT-GACAATT-G-TAAAT-----GCCCTCA----ATTACTTT-G-AAGAAGGTA-ATTTTGATACAT-TT-C--AATTACTGCAGTTTATTTCAAAATGTCTT--GAAAGA------CTTGACTTCGAAGCCTGCTTTG---------TCTTTAAAC-TTT----T---T-GAGAAA--TTCTGCTAAAA-AG-ATGACT------TAGAAATTT-------TCATATTTCT-TTTC--T--AATATATGACA-TTTATC--CA-C--TA---GATTT-TAATTAA----G-TCATG-TT---------------G-A-----------G------------T----T-----CTAAAT
gi|1 : actgtacatcaaaacatgattccagtttatatttgttaaaaaaagaacaaaTA--TTCTCCTGTGTGAACG------TCGCACCTGAA--A-A--------------C-------CCCTATAGCACT-GTGGC--------------AG------------TAT--TTAGACACAGTGA----TACATCTAAT-----CATTGCATTACCACCTCA----------------AACAGTCGAA------CACCATTATTATTAGAGACTTTCAT----TCC---AT-TATTTTCattctcctgtgtgaacgtcgcacctgaaaacccctatagcactgtggcagtatttagacacagtgatacatctaatcattgcattaccacctcaaacagtcgaacaccattattattagagactttcattccattattttcaaacttttaaatttgaataaagactgtacttgaaaagtaattgaaatattgacctttttatgaatgtaaagcaaagtcagtcacaaatacatccaattactttatgaaacgtactagtatttaaatgcaacttaaattaccccatctttgaccagctgtatgatgattcaagttcattatctctgtatatagcaaatgtatagatgatctctcatatcatttgatgtgttttcacaaagatggatttgaaagttaataaaa
gi|10 : actgtacatcaaaacatgattccagtttatatttgttaaaaaaagaacaaaaaaaatgtccataggacatgaatgtcttgtgacaattgtaaatgccctcaattactttgaagaaggtaattttgatacatttcaattactgcagtttatttcaaaatgtcttgaaagacttgacttcgaagcctgctttgtctttaaactttttgagaaattctgctaaaaagatgacttagaaattttcatatttcttttctaatatatgacatttatccactagattttaattaagtcatgttgagttctaaaAAATGTATCCATAGGACCTAAA---CGC---CCCGC--TTGT-GACAGTT-G-TAATT-----GCTCTTATACTAGTACTTT-G-AAGAAAGTA-ATT-------------------T-CTGAAGTTTATATCAAAATATCTT--GGAAGA------CTTGACCTCGAAGCTTGCTTTGATTTG----ACTTCAAGCTTTT----T---T-GAGAAA--TTCTGCTATAA-AT-ATGGCTTCCAAAT------TT-------CCAGATTCCT-TTTC--T--AGCATATGAAT-TTCATC--CA-G--TA---CATTT-T----AA----G-TCATG-TT---------------G-A-----------GTTCTGAATATGAT---AT-----CTGAATG----AGCGAACTCTTAC---------TCAG-GTT-TTTT-T-TAATCT--TGTCTTTG--ATCTCAAATATGAGAGaaacttttaaatttgaataaagactgtacttgaaaagtaattgaaatattgacctttttatgaatgtaaagcaaagtcagtcacaaatacatccaattactttatgaaacgtactagtatttaaatgcaacttaaattaccccatctttgaccagctgtatgatgattcaagttcattatctctgtatatagcaaatgtatagatgatctctcatatcatttgatgtgttttcacaaagatggatttgaaagttaataaaa
gi|11 : gaatgatgctaccgctctgaaagatggtgatcgctagT-G-TAGTT-----GCTCTCA----ATTACT-----------ATA-ATTA-GATACAT-TT-C--GATAATTGATTTCTATTACAAAATGTCTT--GAAAGA------CTTGACCTCGAAGCCTGCTTTAATTCA----TCTTCAAAC-TTT----T---T-GAGGAA--TTTTGCTGAAACATTAAGG-T------T------TGAAATTT-TCAGATGCAT-TTTC--T--ACCTTCTGAAA-TTCATC--CA-G--TA---CAAAT-C----AA----G-TAATT-TT---------------G-ATTCTGAATGAAA------------T---AT-----CTGAATG---AAGTGAACTATTAC---------TC-ACGTAATTC----CTACAT-GTGCCTTTG--CTCTCGGGTATGAGAGGGGT--TCACACCTAAAAAA-AAC------------C-TCAT----CTA-GGCACT-ATAGC--TATGCTGCAT
gi|12 : ACAACTAGG--CACAGGACATGAT---T------TTGCCTTTGT-GACAATT-G-TAATT-----GCTCTCA----ATCACTTT-T-AAGAATGTACATTT-AAT---T-TT-AGAAAATACT--------TTTCAAC-TG-CTTCCGGAAGA------CTTGACCTCGAATCCTGCTTTGAA-AG----TCTCCAAGA-ATT----T---T-GAGGAA--TTCTGCTAAA---T-AT--------------------------CCATATTCCT-TTAT--T--AGCATATGAAA-TTAATC--CA-G--TT---TATTT-C----AA----G-TCATG-CT---------------G-A-----------G------------T----T-----CTGACTG---
gi|13 : actgcatagataaataatgcttctgttaaatattgttaaaaagatatatcTATGAAA-TTCATC--TA-G--TA---CACTT-TTTAAAA----G-T-ACG-TT---------------A--------------------------T---AT-----ATGAATG---AAGTGCACTCTTAC---------TCTG-GTTATTTT-T-CTACCT-GTGCCTATG--TTCTCGGATATGAGAGGAGT--TGACACTTAATCAA-G--------------CTT-ATAGCGCTA-GAGACT-GTAGC--CATGCTGCATCAAA------------TAC--A-----------A----GACATCTAAT-----AATTGTATAA--ACCTGATG----A-A-CAGTGAAAC-GTCTTA------TACCATTATTATCAGAAAACGTCAT----GCC---AT-CATTTTCtaatttatgaatgaag
gi|14 : tagatatggaaattgaataatcctcattagc--T--AGCTTATGAAA-TTCATC--TA-G--TA---CACTT-TTTAAAA----G-T-ACG-TT---------------A--------------------------T---AT-----ATGAATG---AAGTGCACTCTTAC---------TCTG-GTTATTTT-T-CTACCT-GTGCCTATG--TTCTCGGATATGAGAGGAGT--TGACACTTAATCAA-G--------------CTT-ATAGCGCTA-GAGACT-GTAGC--CATGCTGCATCAAA------------TAC--A-----------A----GACATCTAAT-----AATTGTATAA--ACCTGATG----A-A-CAGTGAAAC-GTCTTA------TACCATTATTATCAGAAAACGTCAT----GCC---AT-CATTTTCaaaa
gi|15 : agatatggaaattgaataatcctcat---AAGTGAACTGTTAC---------TC-C-GGTATTTT-T-CTACTT-TTTCCTTTG--TTTTCAAGGATGA-AG------TCACACCTGAGTAA-A--------------CCT-ACAGCCCTG-AGCACT-GTGGC--CATGCTGCATCAAG------------TATAAATAGACATAATGA----GACATATGAT-----TATTGCATAAACACCTCATG-GC----------AAATAGTATAA------CACCATTTTCCTCGTACACACTCAT----TCC---AT-CATTTTCaa
gi|16 : AAATAAGCCCATAGGACATGAA---TGC---CCTGCCCATGT-GACAATC-A-TAATT-----GCTTTTA----ATTACTTT-G-AGGACTGTA-ATTA-AATACAT-TT-C--AATCACTGAAGTTTATTTCAAAACGTCTT--GAAAGA------CTTTACCTCAAAGCCTGCTTTGATTCA----CCTTTAAAC--TT----T---T-GAGGAA--TTCTGCTAAAA-AT-TTGAAA------T------TT-------CCAGATGCAT-TTTC--T--GGGATATGAAA-TTCATC--CA-G--TA---CATTaagcttttaagtttacatatgttgatactagtaagtaatatgattgaaaagtaattgaaatcttgac
gi|17 : agaactagTGTGTCCATAGGACCTGAA---TG--------------T-GA-AATC-----ACT-----GCTCTCA----ATTACTTT-G-AAGAAAGTA-ATTA-AATACAT-TT-C--AATTACCAAAGTTTAATTC-AAATGTCTT--GGAAGG------TTTGACCCCAAAGGCTGCTTTGATTCGATCATCTTCAAGC-TTT----TAGGTAGAGGAA--TTCTGC-AAAA-AT-TTGGCT------T------TGAAAATTTTCAGATGCAT-TTTC--TCAGACA-ATGATG-TTCATT--CA-
gi|19 : -GAAAAAT-G-TAATTCATAAG-TCTCA----ATTGCTTT-G-AA-AATGTA-ATTA-AATGTAT-TT-C--AATT---GAAGTTTATT-CAAAATGTCTT--GGAAGA------CT-------------CGCTTTGATTTG----TCTTCATTG-TTT----A---T-GAGG-A--TTTTGCTAACA-----------------------CG-------TAAACTGCGT-TTCC--T--GGC--GTGGAA-TACATA--CA-T--TA----ATTT-T----AA----
gi|2 : acaattacattgatttaaaCAAT--G-TAATT-----------A----ATTACTTTTG-AAGAATATA-ATTA-AATACAT-TT-C--ATTTAATGATGTTTATTTTAAA
gi|2 : tttcaattgtattgatgtttctttcaattacttgctatgataattacattgattttaac-AT-CTGGCT------T------TAAAATTT-CCAGATGCTT-TTTTCGT--GACTTA--AAA-TTTACC--CA-C--TG---CATTT-G----AA----G-CCATG-TTCAGTTAACGTTCT--G-A-----------G------------T---ATAGTGTCTGAATG---AAGT-AACCTTTA---------------------TT-T-CTACGT-GCGCTTTTG--TTCTCAGACGTGAGAGGGGT--TCACACTTGAACAA-AATTAGACCTTGAC-C-T-AAAGCCCTA-GGCACG-TTGTC--CATGCTGCATCTCG------------TAT--ACAAA--------------------------------CATA----CCCCATG-AC-A-ATCAGTGA----------------CAC-ATCATTATCAGACATTTTCAT----TCC---AT-CATTTTCcaccttgagcacatacatatacaaacaaagcaatgcaatcttatttcacaatttcgagcttatttccatcaaatactcgtagattcgaagtgtttgcatctggctttaaaatttccagatgcttttttcgtgacttaaaatttacccactgcatttgaagccatgttcagttaacgttctgagtatagtgtctgaatgaagtaacctttatttctacgtgcgcttttgttctcagacgtgagaggggttcacacttgaacaaaattagaccttgacctaaagccctaggcacgttgtccatgctgcatctcgtatacaaacataccccatgacaatcagtgacacatcattatcagacattttcattccatcattttcaaatttatagtataaagattttgattataaaataattgaaatgtgaaaaaacccttgactttcttggaatgtattaaacttgaaatggaaagcaaagtcaattacaaatacattcaattactttataaaaatgaatttaaatgcagctaattacaattacattttcaatgatcctatccctggctcatatgta
gi|20 : tttcaattgtattgatgtttctttcaattacttgctatgataattacattgattttaaccaatgtaattaattacttttgaagaatataattaaatacatttcatttaatgatgtttattttaaacaccttgagcacatacatatacaaacaaagcaatgcaatcttatttcacaatttcgagcttatttccatcaaatactcgtagattcgaagtgtttgc-GACAATTTG-TAATT-----GCTCTCA----ATCTCTTT-G-AAGAATGTA-ATT-------------------TACTAAAGTTCATGTCAATATGATTT--TGAAGA------CTTGACTTCGAAGTTTGCTGTAA-TAG----TCTCCAAGC-TTG----T---A-GACGAAGTTTTTG-TAAaaatttatagtataaagattttgattataaaataattgaaatgtgaaaaaacccttgactttcttggaatgtattaaacttgaaatggaaagcaaagtcaattacaaatacattcaattactttataaaaatgaatttaaatgcagctaattacaattacattttcaatgatcctatccctggctcatatgta
gi|21 : aaactagaaataagtccacagTGAAACAATCTAA------CACCATTATTA---AATACTTTCAT----TCC---AT-CATATTCttacttccatagctttctc
gi|22 : caataattcAATTTGTCCATAT-ATATGAAAATTGAAAACCCACCCATGTTGATA-TT-G-TAATT-----GCTCTCA----ATTACTTT-G-AAGAGTGTG-ATTA-AATGCAT-TT-C--AATTACTGAAGTTTATTTAAATATGTCTT--GGAAGA-------TTGACCTCAAAATCTGCTTTGATTaaacttttaagtttgaataaagaatacaattgtataaatgtatttaaatacattcaattccttctatttagaaggaaaatcaattacaaatacatccaattactttatgaa
gi|27 : aactagg-A-CACTGAAAATGTCTTA------CACCATTATTTTCCGACACTTCCAG----TCT---AC-CACTTT
gi|28 : AAATATGTCCATAAGACAGAAA---TGC---CCCACCCTTGT-GACAATT-ATTAATT-----GCacaggtggaataaagaatataattgtaatcaaaaatgcattgctatttaagtaatttatctagatacattaaa
gi|29 : cttgacttaccttatgaattctctatattgtgttcaaactagGA----GACATTTAAT-----CATTGTACAAACACCGTATG-AC-A-AACAGTGAAACGGTCTAA------CACCATTATTATCTGACACTTTCAT----TCC---AT-CAATT
gi|3 : CAAT--G-TAATT-----A---TAG----ATTACTTT-T-GAGAATATA--TTA-AATACTT-TT-C--ATTTAATTATGTTTATTTCAAA
gi|3 : ac-------CCAGATGCTTATTTCG-T--GACTTA--AAA-TTTACC--CA-C--TG---CATTTGT----AA----G-CCATG-TTCAGGTTAACGTTGCTG-A-----------G------------T---ATGTGG-CTGAATG---AAGTGACCT-----------------------TTTT-T-CTACGT-GCGCTTTTGGTTTCTCAGACGTAAGAGGGGG--TCACACTTGA-CAA-AAATTAGACCTTGACC-T-AAAGCCCTA-GGCACG-TTGTC--CATGCTGCATC---------------TGT--AT----------------ACA---AA-----------CATA-----CCCATG-AC-A-ATCAGTGA----------------CAC-ATCATTATCAGACA-TTTCAT----TCC---ATCCATTTTCcaccttgagcaacatatacatatacaacaacaaagcaatgcaatcttatttcacaattttgagcttatttccatcaaatactagtagaaattcgaagtgtttgcatttggtgttaaaattccagatgcttatttcgtgacttaaaatttacccactgcatttgtaagccatgttcaggttaacgttgctgagtatgtggctgaatgaagtgaccttttttctacgtgcgcttttggtttctcagacgtaagagggggtcacacttgacaaaaattagaccttgacctaaagccctaggcacgttgtccatgctgcatctgtatacaaacatacccatgacaatcagtgacacatcattatcagacatttcattccatccattttcaaatttatagtataaagattttgattataaaataattgaaatgtgaataaccctgactttcttggaatgtattaaacttgaaatggaaagcaaagtcaattacaaatacattcaattactttataaaaattaatttaaatgcagctaattacaatacatttttcaatgatcccatttct
gi|30 : accaatgtaattatagattacttttgagaatatattaaatacttttcatttaattatgtttatttcaaacaccttgagcaacatatacatatacaacaacaaagcaatgcaatcttatttcacaattttgagcttatttccatcaaatactagtagaaattcgaagtgtttgcatttggtgttaaaatt-GTATTTTTG--TTTTCAGGTCTGAACAGAGT--TCACATTTGAACAA-A--------------aaatttatagtataaagattttgattataaaataattgaaatgtgaataaccctgactttcttggaatgtattaaacttgaaatggaaagcaaagtcaattacaaatacattcaattactttataaaaattaatttaaatgcagctaattacaatacatttttcaatgatcccatttct
gi|31 : gtgatctttattaaACCTCGAGGCCTGCTTTGATTCG----TTTTCAGAC-GTT----T---T-GAGGAA--TTCTGCT-AAA-AT-ATGGCT------T------TG-------attcaacctttgacttctaccctaggc
gi|32 : ttAATT-A-CAAGT-----ACACCCA----ATTACTTT-ATAAGAATGTA-TTCA-AATGCaaatttccactgtttt
gi|33 : atgcaactttT-GTAGC--CGTGCCGCATCAAA------------TAT--ACAAACATATTAATTAGGACATCAAGT-----TATGGCtgcta
gi|34 : AAATATGTCCGAAGGACATGAA---TGC---CCCACCCTTGT-Gt
gi|4 : acagaataaaaccaaactagATT-G-TAATT-----GCTCTCA----ATTACTTT-G-AAGACTGTA-ATCA-AATACAT-TT-C--AATTACTGC--TTTATTTCAGAATGTCTT--GGAAGA------CTTGACCTTGAAGCCTGCTCTGATTCA----TCTTCATGA-TTG----T---T-GAGTAT--TTCTGCTAAAA-GT--TGACT------T----------------CAGA---AT-TTTC--T--AAAATGTTCAG-GTC-TC--TA----TA---TAT---------A----GCTAATG-T------------------A-----------T------------T---GT-----TTGAATA---AAGTGAACTCTTAA---------TCAG-GAGGTTGT-T-CTACCCCGTGTCTTTG--TTCTTTGATATGAGAGGGGT--TCACTCCTGAACAA-A--------------C-TTATTGCCCTT-GGCACT-GGGGT--CATGCTCCACCAAA------------AAT--ATAGACATAATAA----GACATCTCAT-----TAATGCATAAATACACCATGTGT-A-A-CACTGAAATAGTTTA-------CACCATTATCATCAGACACTTTCAT----TAC---AT-CATTGTC
gi|5 : -A-----------A------------T---AT-----CTGAATG---AAATGAACTTTCAC---------T-----------------ACCT-GTGCA---G--T---CAGGTATGGAAAGGCT--TCACACATGAACAC-A--------------A-T--CAGCCCTT---CACTTATAGCACCCTGCTGTATAAAGCAGTCATG----TAT--ATAGACATAAGGA----AACATATAGTTATTACATCACATAAACACCCCATG-AC-ATA-CTGTGAAACAGTCTAA------CACCATTATTATCAGACAATTTCATAATGTTC---AT-CATTTTCgaactattaggttggaagatagaatgtaattaaaaagtaattgaaatcttgaccttttagtaatgtatttgaatatatccaattatatgtaattgaaagatttgacaattacaaatgcatctaaatactttataaaatgaatttaaagcagctgattaccgttcaatctt
gi|6 : gaatatACAAATATGTCCGTAGGACATGAA---TGG---CTTGCCCGTGA-GACAGTT-G-TAAT------GCTATCA----ATTACTTT-A-AAAAATGTA-AT------ACAT-TT-C--AATTGCTGAAGTTTATATCAAAATGTTTT--GGAAAA------CATGACCTCAAAGCCTGCTTTGATTCG----TCTTCAAGC-ATC----T---T-TAGGAA--TTCTACTAAAG-AT-ATGGCT------T------TG-------CCAGATTCCT-TTTC--T--GGCATACGAAA-TTCGTC--CA-G--TA---CATTT-T----AA----G-TCATG-TT---------------G-A-----------G------------T---AT-----CCCAATG---AAGTGAACTCTTAC---------TC-A-ATTATTTT-TGCAACCT-ATGCCTTTG--TTCTCGGGTATGAGAGGAGT--TCACATCTGAACAA-A--------------TAT-ATAGCCCTG-GGTACT-ATGGT--CATGCTGCAGAAAG------------TAT--ACAGACATAAGGA----GACGTCTAAT-----CATTGCATTAACACCTCATG-AC-A-ACCAGTGAAATAGTCTAACAACATCACCATTATTATCCGACTTTTTCAT----TCCCGGAT-CATTTTCaaatttttaaatctgaataaagaatgtaattgtaattgatactactaagtaattgagatgtacattgcaattgaaaatgcttaactttttatgtaatgtatttaaatacattcaattacttgaaattgaaagctaagttcaatacaattacatccaattactttataaaaatgtttcaaaatacagctaattacatttttttgttgctaccccatccctgcaacatacatatatctacagcacctgtatacatgtat
gi|7 : GACCTCGAAGCCTGCTTCGATTCA----TCTTCACGC-TTTCATGT---T-GAG
gi|7 : A-TTCATCTTCACGCTTT---CATGT-T----GA----G-CTCTGATT---------------GTA-----------G------------T---AT-----CTGAATGTTGAAGTGAACTCTTGCAGATAGTTTTC-A-GTT-TTTT-T-CTACCT-GTACCTTTG--TTTTCAGGTAT--GAGGAGTAATCACACTTTAACAA-A--------------C-T-A------TG-GACACC-GTGGC--CATGCTGCACCAAGTACCCCACCAGCTAT--ATAGACATCATAG----GACATTTAAT-----CATTGCATTAACACCCAATG-ACAA-A-CAGTGGAACAGTCTAA------TACCATTATTATCAG--GCTTTCAT----TCC---AT-CATTTTCctctgattgtagtatctgaatgttgaagtgaactcttgcagatagttttcagtttttttctacctgtacctttgttttcaggtatgaggagtaatcacactttaacaaactatggacaccgtggccatgctgcaccaagtaccccaccagctatatagacatcataggacatttaatcattgcattaacacccaatgacaaacagtggaacagtctaataccattattatcaggctttcattccatcattttcaaactttttaagttcgaataattaagaatgcaattgaaaagtaactgaaatatttacttatcatgaacgtacatgtattcaaataaagcaaagtcaattacaaata
gi|8 : gacctcgaagcctgcttcgAAAT-G-TAATTAATAAG-TCTCA----ATTACTTT-G-TAAATTGCA-ATCA-AATTTAT-TT-C--AATTAAAAAAATT-ATTTCAAAATGTCTT--GGAAGAGTTAGACTTGACCTCGAAACCTGGTTTGATTTG----TTT---AG--TTT----T---T-GAGAAA--CTTTGCTAA---------------------------------------TGCGT-TTCC--T--GCGACGTGGAACTTCATA--CA-G--TAGTACATTT-T----AAATAAG-TCATG-TT---------------T-T-----------G------------TTTAATT----CTGAATA---AAATAAACTCTTAC---------TC-G-GGTATTTTAT-CT-CCT-GCCCAATTG--TGTTCAGGTAAGAGAGGAGG--TCACACCTTAACA-------------------T-ATAGCCCTG-GGCACT-CGGGC--CATGCTGCATTAAG------------aaactttttaagttcgaataattaagaatgcaattgaaaagtaactgaaatatttacttatcatgaacgtacatgtattcaaataaagcaaagtcaattacaaata
gi|9 : gcaatttaattaaaaagtacctttatgaatttgtcaattactcgctcttacaattacaataatttaaaaaAA---TGT---CCCGCCCATTT-GAAAATT-G-TAATT-----GCTATCA----ATTACTTT-G-AAGAATGTA-TTTA-AATACATATTGC--AATTACTGAAGTTTATTTCAAAATATCTT--GGAAGA------CGT--TCTTGAAGCCTGCTTTGATTCA----TCTTCAAGC-TTC----T---T-GAGGAA--TTCTGCTAAAA-AT-------------T------T--------CCAGATGCAT-TATC--T--GAGACATGAAA-TTCATC--CC-G--TA---CATTT-G----AA----G-ACAAG-TT---------------G-A-----------G------------T---AT-----CTGAATG---AATAGAACTCTTA-------------G-GTATTTTT-T-CTACCT-----------------AGATATGAGATGGGT--TCATACCTAAATAATG--------------C-T-ATAGCCCTG-GGCACT-GTGGC--CATGCTGCATCAAG------------TAT--ATAGACATAATGA----GACATCTGAT-----TATaa
6 sequences could not be aligned to this reference sequence:
Unaligned ( gi|18 ): TTGATCAGCAATATGATGCTTCAAGTTCATTTTTTCTTCGTGTAGAAAATTTATAAATGATCTCTCACATCATTTGATGTGTCTTCACAAAGATGTACTTGAACTTTAATAATCATATTAGGATAACAAACACAGTTTGTAATCCATATCCACGATGAAAACAGTTTTTAATTGGCATTTATTCAATGTGACTAACTGTGAC
Unaligned ( gi|23 ): ATTTTTAATTACCCCATCTTTGATCAGCAATGTGATGTTCCAAATTCATTTTCTCTGTATGTAGGAAATTTATAGATGATATCTCATATTATTTAACGTGTCTTCACAAAAATGTTTTTGAAAACTTATTAAAAAAACGTTTGTAA
Unaligned ( gi|24 ): ATACGTACTGAAATGCGGCTTATGACATTTTCAATTACTCCATCCTTGATCAGCAACATGTTTTAAACTTTTTCTAGAAAAATGCAGCAGATTTACAGATGACCTCACATCATTTGATGTGTCTTCACAAAA
Unaligned ( gi|25 ): AAATGTACATTTGTAAATGAAAAGTAATTGAAACCTTTAACTTTTTAATAAATGTATTTGAATACATTATATCCATTTAATTACTTATAATTAAAAGCTAAGTCAACCATAAATACATCCAGTTACTTTCT
Unaligned ( gi|26 ): AATGTACATTTGTAAATGAAAAGTAATTGAAACCTTTAACTTTTTAATAAATGTATTTGAATACATTATATCCATTTAATTACTTATAATTAAAAGCTAAGTCAACCATAAATACATCCAGTTACTTTCTA
Unaligned ( gi|35 ): AATACATCCAATTAATCAATTAAAATAGCCCGACCTT
Alignments
lowQualScore : 1111 11111 66666666666666666666666666666 111111 66666666666666666666666666666666666666666666666666666 3333333333333333333 444444444444444444 222222222222 1111111111 111111 11111111
lowQualScore : 777 2222 0 2 3 2 2 11111 0 5555 2 2 2 44 1 2 2 33 1 44 888888 6666 2 6666 555 2 44 3 00000000000000000000000000000 1 3 66 33 0 1 2 33 6666 444 999999 6666 3 2 3 33333333333333333333333333333333333333333333333333333 555 0 5555555555555555555 3 3 22 33 2 0 33 2 444444444444444444 33 44 2 33 666666666666 44 2 0 0000000000 0 000000 77 99999999 5 0 888888 2 6666 555 3
lowQualScore : ... .... . . . . . ..... . .... . . . .. . . . .. . .. ...... .... . .... ... . .. . ............................. . . .. .. . . . .. .... ... ...... .... . . . ..................................................... ... . ................... . . .. .. . . .. . .................. .. .. . .. ............ .. . . .......... . ...... .. ........ . . ...... . .... ... .
lowQualScore : 000 7777 7 4 3 4 4 88888 3 3333 5 5 5 44 5 7 7 77 1 22 888888 1111 9 1111 000 9 22 1 77777777777777777777777777777 0 1 88 99 4 9 5 44 2222 777 444444 1111 1 8 1 22222222222222222222222222222222222222222222222222222 000 2 6666666666666666666 1 1 99 77 9 4 99 9 777777777777777777 44 33 9 99 999999999999 66 9 4 4444444444 2 333333 00 77777777 4 7 888888 1 5555 444 1
consensus : ACAAATATGTCCATAGGACATGAA---TGC---CCCGCCCNTGT-GACAATT-G-TAATT-----GCTCTCA----ATTACTTT-G-AAGAATGTA-ATTA-AATACAT-TT-C--AATTACTGAAGTTTATTTCAAAATGTCTT--GGAAGA------CTTGACCTCGAAGCCTGCTTTGATTCG----TCTTCAAGC-TTT----T---T-GAGGAA--TTCTGCTAAAA-AT-ATGGCT------T------TG-------CCAGATGCNT-TTTC--T--GGCATATGAAA-TTCATC--CA-G--TA---CATTT-T----AA----G-TCATG-TT---------------G-A-----------G------------T---AT-----CTGAATG---AAGTGAACTCTTAC---------TC-G-GTTATTTT-T-CTACCT-GTGCCTTTG--TTCTCGGGTATGAGAGGGGT--TCACACCTGAACAA-A--------------C-T-ATAGCCCTG-GGCACT-GTGGC--CATGCTGCATCAAG------------TAT--ATAGACATAATGA----GACATCTAAT-----CATTGCATAAACACCCCATG-AC-A-A-CAGTGAAACAGTCTAA------CACCATTATTATCAGACACTTTCAT----TCC---AT-CATTTTC
Reference ( family-1089 ) : ACAAATATGTCCATAGGACATGAA---TGC---CCCGCCCNTGT-GACAATT-G-TAATT-----GCTCTCA----ATTACTTT-G-AAGAATGTA-ATTA-AATACAT-TT-C--AATTACTGAAGTTTATTTCAAAATGTCTT--GGAAGA------CTTGACCTCGAAGCCTGCTTTGATTCG----TCTTCAAGC-TTT----T---T-GAGGAA--TTCTGCTAAAA-AT-ATGGCT------T------TG-------CCAGATGCNT-TTTC--T--GGCATATGAAA-TTCATC--CA-G--TA---CATTT-T----AA----G-TCATG-TT---------------G-A-----------G------------T---AT-----CTGAATG---AAGTGAACTCTTAC---------TC-G-GTTATTTT-T-CTACCT-GTGCCTTTG--TTCTCGGGTATGAGAGGGGT--TCACACCTGAACAA-A--------------C-T-ATAGCCCTG-GGCACT-GTGGC--CATGCTGCATCAAG------------TAT--ATAGACATAATGA----GACATCTAAT-----CATTGCATAAACACCCCATG-AC-A-A-CAGTGAAACAGTCTAA------CACCATTATTATCAGACACTTTCAT----TCC---AT-CATTTTC
gi|1 : AAAAATGTCCATAGGACATGAA---TGT---C------TTGT-GACAATT-G-TAAAT-----GCCCTCA----ATTACTTT-G-AAGAAGGTA-ATTTTGATACAT-TT-C--AATTACTGCAGTTTATTTCAAAATGTCTT--GAAAGA------CTTGACTTCGAAGCCTGCTTTG---------TCTTTAAAC-TTT----T---T-GAGAAA--TTCTGCTAAAA-AG-ATGACT------TAGAAATTT-------TCATATTTCT-TTTC--T--AATATATGACA-TTTATC--CA-C--TA---GATTT-TAATTAA----G-TCATG-TT---------------G-A-----------G------------T----T-----CTAAAT
gi|1 : actgtacatcaaaacatgattccagtttatatttgttaaaaaaagaacaaaTA--TTCTCCTGTGTGAACG------TCGCACCTGAA--A-A--------------C-------CCCTATAGCACT-GTGGC--------------AG------------TAT--TTAGACACAGTGA----TACATCTAAT-----CATTGCATTACCACCTCA----------------AACAGTCGAA------CACCATTATTATTAGAGACTTTCAT----TCC---AT-TATTTTCattctcctgtgtgaacgtcgcacctgaaaacccctatagcactgtggcagtatttagacacagtgatacatctaatcattgcattaccacctcaaacagtcgaacaccattattattagagactttcattccattattttcaaacttttaaatttgaataaagactgtacttgaaaagtaattgaaatattgacctttttatgaatgtaaagcaaagtcagtcacaaatacatccaattactttatgaaacgtactagtatttaaatgcaacttaaattaccccatctttgaccagctgtatgatgattcaagttcattatctctgtatatagcaaatgtatagatgatctctcatatcatttgatgtgttttcacaaagatggatttgaaagttaataaaa
gi|10 : actgtacatcaaaacatgattccagtttatatttgttaaaaaaagaacaaaaaaaatgtccataggacatgaatgtcttgtgacaattgtaaatgccctcaattactttgaagaaggtaattttgatacatttcaattactgcagtttatttcaaaatgtcttgaaagacttgacttcgaagcctgctttgtctttaaactttttgagaaattctgctaaaaagatgacttagaaattttcatatttcttttctaatatatgacatttatccactagattttaattaagtcatgttgagttctaaaAAATGTATCCATAGGACCTAAA---CGC---CCCGC--TTGT-GACAGTT-G-TAATT-----GCTCTTATACTAGTACTTT-G-AAGAAAGTA-ATT-------------------T-CTGAAGTTTATATCAAAATATCTT--GGAAGA------CTTGACCTCGAAGCTTGCTTTGATTTG----ACTTCAAGCTTTT----T---T-GAGAAA--TTCTGCTATAA-AT-ATGGCTTCCAAAT------TT-------CCAGATTCCT-TTTC--T--AGCATATGAAT-TTCATC--CA-G--TA---CATTT-T----AA----G-TCATG-TT---------------G-A-----------GTTCTGAATATGAT---AT-----CTGAATG----AGCGAACTCTTAC---------TCAG-GTT-TTTT-T-TAATCT--TGTCTTTG--ATCTCAAATATGAGAGaaacttttaaatttgaataaagactgtacttgaaaagtaattgaaatattgacctttttatgaatgtaaagcaaagtcagtcacaaatacatccaattactttatgaaacgtactagtatttaaatgcaacttaaattaccccatctttgaccagctgtatgatgattcaagttcattatctctgtatatagcaaatgtatagatgatctctcatatcatttgatgtgttttcacaaagatggatttgaaagttaataaaa
gi|11 : gaatgatgctaccgctctgaaagatggtgatcgctagT-G-TAGTT-----GCTCTCA----ATTACT-----------ATA-ATTA-GATACAT-TT-C--GATAATTGATTTCTATTACAAAATGTCTT--GAAAGA------CTTGACCTCGAAGCCTGCTTTAATTCA----TCTTCAAAC-TTT----T---T-GAGGAA--TTTTGCTGAAACATTAAGG-T------T------TGAAATTT-TCAGATGCAT-TTTC--T--ACCTTCTGAAA-TTCATC--CA-G--TA---CAAAT-C----AA----G-TAATT-TT---------------G-ATTCTGAATGAAA------------T---AT-----CTGAATG---AAGTGAACTATTAC---------TC-ACGTAATTC----CTACAT-GTGCCTTTG--CTCTCGGGTATGAGAGGGGT--TCACACCTAAAAAA-AAC------------C-TCAT----CTA-GGCACT-ATAGC--TATGCTGCAT
gi|12 : ACAACTAGG--CACAGGACATGAT---T------TTGCCTTTGT-GACAATT-G-TAATT-----GCTCTCA----ATCACTTT-T-AAGAATGTACATTT-AAT---T-TT-AGAAAATACT--------TTTCAAC-TG-CTTCCGGAAGA------CTTGACCTCGAATCCTGCTTTGAA-AG----TCTCCAAGA-ATT----T---T-GAGGAA--TTCTGCTAAA---T-AT--------------------------CCATATTCCT-TTAT--T--AGCATATGAAA-TTAATC--CA-G--TT---TATTT-C----AA----G-TCATG-CT---------------G-A-----------G------------T----T-----CTGACTG---
gi|13 : actgcatagataaataatgcttctgttaaatattgttaaaaagatatatcTATGAAA-TTCATC--TA-G--TA---CACTT-TTTAAAA----G-T-ACG-TT---------------A--------------------------T---AT-----ATGAATG---AAGTGCACTCTTAC---------TCTG-GTTATTTT-T-CTACCT-GTGCCTATG--TTCTCGGATATGAGAGGAGT--TGACACTTAATCAA-G--------------CTT-ATAGCGCTA-GAGACT-GTAGC--CATGCTGCATCAAA------------TAC--A-----------A----GACATCTAAT-----AATTGTATAA--ACCTGATG----A-A-CAGTGAAAC-GTCTTA------TACCATTATTATCAGAAAACGTCAT----GCC---AT-CATTTTCtaatttatgaatgaag
gi|14 : tagatatggaaattgaataatcctcattagc--T--AGCTTATGAAA-TTCATC--TA-G--TA---CACTT-TTTAAAA----G-T-ACG-TT---------------A--------------------------T---AT-----ATGAATG---AAGTGCACTCTTAC---------TCTG-GTTATTTT-T-CTACCT-GTGCCTATG--TTCTCGGATATGAGAGGAGT--TGACACTTAATCAA-G--------------CTT-ATAGCGCTA-GAGACT-GTAGC--CATGCTGCATCAAA------------TAC--A-----------A----GACATCTAAT-----AATTGTATAA--ACCTGATG----A-A-CAGTGAAAC-GTCTTA------TACCATTATTATCAGAAAACGTCAT----GCC---AT-CATTTTCaaaa
gi|15 : agatatggaaattgaataatcctcat---AAGTGAACTGTTAC---------TC-C-GGTATTTT-T-CTACTT-TTTCCTTTG--TTTTCAAGGATGA-AG------TCACACCTGAGTAA-A--------------CCT-ACAGCCCTG-AGCACT-GTGGC--CATGCTGCATCAAG------------TATAAATAGACATAATGA----GACATATGAT-----TATTGCATAAACACCTCATG-GC----------AAATAGTATAA------CACCATTTTCCTCGTACACACTCAT----TCC---AT-CATTTTCaa
gi|16 : AAATAAGCCCATAGGACATGAA---TGC---CCTGCCCATGT-GACAATC-A-TAATT-----GCTTTTA----ATTACTTT-G-AGGACTGTA-ATTA-AATACAT-TT-C--AATCACTGAAGTTTATTTCAAAACGTCTT--GAAAGA------CTTTACCTCAAAGCCTGCTTTGATTCA----CCTTTAAAC--TT----T---T-GAGGAA--TTCTGCTAAAA-AT-TTGAAA------T------TT-------CCAGATGCAT-TTTC--T--GGGATATGAAA-TTCATC--CA-G--TA---CATTaagcttttaagtttacatatgttgatactagtaagtaatatgattgaaaagtaattgaaatcttgac
gi|17 : agaactagTGTGTCCATAGGACCTGAA---TG--------------T-GA-AATC-----ACT-----GCTCTCA----ATTACTTT-G-AAGAAAGTA-ATTA-AATACAT-TT-C--AATTACCAAAGTTTAATTC-AAATGTCTT--GGAAGG------TTTGACCCCAAAGGCTGCTTTGATTCGATCATCTTCAAGC-TTT----TAGGTAGAGGAA--TTCTGC-AAAA-AT-TTGGCT------T------TGAAAATTTTCAGATGCAT-TTTC--TCAGACA-ATGATG-TTCATT--CA-
gi|19 : -GAAAAAT-G-TAATTCATAAG-TCTCA----ATTGCTTT-G-AA-AATGTA-ATTA-AATGTAT-TT-C--AATT---GAAGTTTATT-CAAAATGTCTT--GGAAGA------CT-------------CGCTTTGATTTG----TCTTCATTG-TTT----A---T-GAGG-A--TTTTGCTAACA-----------------------CG-------TAAACTGCGT-TTCC--T--GGC--GTGGAA-TACATA--CA-T--TA----ATTT-T----AA----
gi|2 : acaattacattgatttaaaCAAT--G-TAATT-----------A----ATTACTTTTG-AAGAATATA-ATTA-AATACAT-TT-C--ATTTAATGATGTTTATTTTAAA
gi|2 : tttcaattgtattgatgtttctttcaattacttgctatgataattacattgattttaac-AT-CTGGCT------T------TAAAATTT-CCAGATGCTT-TTTTCGT--GACTTA--AAA-TTTACC--CA-C--TG---CATTT-G----AA----G-CCATG-TTCAGTTAACGTTCT--G-A-----------G------------T---ATAGTGTCTGAATG---AAGT-AACCTTTA---------------------TT-T-CTACGT-GCGCTTTTG--TTCTCAGACGTGAGAGGGGT--TCACACTTGAACAA-AATTAGACCTTGAC-C-T-AAAGCCCTA-GGCACG-TTGTC--CATGCTGCATCTCG------------TAT--ACAAA--------------------------------CATA----CCCCATG-AC-A-ATCAGTGA----------------CAC-ATCATTATCAGACATTTTCAT----TCC---AT-CATTTTCcaccttgagcacatacatatacaaacaaagcaatgcaatcttatttcacaatttcgagcttatttccatcaaatactcgtagattcgaagtgtttgcatctggctttaaaatttccagatgcttttttcgtgacttaaaatttacccactgcatttgaagccatgttcagttaacgttctgagtatagtgtctgaatgaagtaacctttatttctacgtgcgcttttgttctcagacgtgagaggggttcacacttgaacaaaattagaccttgacctaaagccctaggcacgttgtccatgctgcatctcgtatacaaacataccccatgacaatcagtgacacatcattatcagacattttcattccatcattttcaaatttatagtataaagattttgattataaaataattgaaatgtgaaaaaacccttgactttcttggaatgtattaaacttgaaatggaaagcaaagtcaattacaaatacattcaattactttataaaaatgaatttaaatgcagctaattacaattacattttcaatgatcctatccctggctcatatgta
gi|20 : tttcaattgtattgatgtttctttcaattacttgctatgataattacattgattttaaccaatgtaattaattacttttgaagaatataattaaatacatttcatttaatgatgtttattttaaacaccttgagcacatacatatacaaacaaagcaatgcaatcttatttcacaatttcgagcttatttccatcaaatactcgtagattcgaagtgtttgc-GACAATTTG-TAATT-----GCTCTCA----ATCTCTTT-G-AAGAATGTA-ATT-------------------TACTAAAGTTCATGTCAATATGATTT--TGAAGA------CTTGACTTCGAAGTTTGCTGTAA-TAG----TCTCCAAGC-TTG----T---A-GACGAAGTTTTTG-TAAaaatttatagtataaagattttgattataaaataattgaaatgtgaaaaaacccttgactttcttggaatgtattaaacttgaaatggaaagcaaagtcaattacaaatacattcaattactttataaaaatgaatttaaatgcagctaattacaattacattttcaatgatcctatccctggctcatatgta
gi|21 : aaactagaaataagtccacagTGAAACAATCTAA------CACCATTATTA---AATACTTTCAT----TCC---AT-CATATTCttacttccatagctttctc
gi|22 : caataattcAATTTGTCCATAT-ATATGAAAATTGAAAACCCACCCATGTTGATA-TT-G-TAATT-----GCTCTCA----ATTACTTT-G-AAGAGTGTG-ATTA-AATGCAT-TT-C--AATTACTGAAGTTTATTTAAATATGTCTT--GGAAGA-------TTGACCTCAAAATCTGCTTTGATTaaacttttaagtttgaataaagaatacaattgtataaatgtatttaaatacattcaattccttctatttagaaggaaaatcaattacaaatacatccaattactttatgaa
gi|27 : aactagg-A-CACTGAAAATGTCTTA------CACCATTATTTTCCGACACTTCCAG----TCT---AC-CACTTT
gi|28 : AAATATGTCCATAAGACAGAAA---TGC---CCCACCCTTGT-GACAATT-ATTAATT-----GCacaggtggaataaagaatataattgtaatcaaaaatgcattgctatttaagtaatttatctagatacattaaa
gi|29 : cttgacttaccttatgaattctctatattgtgttcaaactagGA----GACATTTAAT-----CATTGTACAAACACCGTATG-AC-A-AACAGTGAAACGGTCTAA------CACCATTATTATCTGACACTTTCAT----TCC---AT-CAATT
gi|3 : CAAT--G-TAATT-----A---TAG----ATTACTTT-T-GAGAATATA--TTA-AATACTT-TT-C--ATTTAATTATGTTTATTTCAAA
gi|3 : ac-------CCAGATGCTTATTTCG-T--GACTTA--AAA-TTTACC--CA-C--TG---CATTTGT----AA----G-CCATG-TTCAGGTTAACGTTGCTG-A-----------G------------T---ATGTGG-CTGAATG---AAGTGACCT-----------------------TTTT-T-CTACGT-GCGCTTTTGGTTTCTCAGACGTAAGAGGGGG--TCACACTTGA-CAA-AAATTAGACCTTGACC-T-AAAGCCCTA-GGCACG-TTGTC--CATGCTGCATC---------------TGT--AT----------------ACA---AA-----------CATA-----CCCATG-AC-A-ATCAGTGA----------------CAC-ATCATTATCAGACA-TTTCAT----TCC---ATCCATTTTCcaccttgagcaacatatacatatacaacaacaaagcaatgcaatcttatttcacaattttgagcttatttccatcaaatactagtagaaattcgaagtgtttgcatttggtgttaaaattccagatgcttatttcgtgacttaaaatttacccactgcatttgtaagccatgttcaggttaacgttgctgagtatgtggctgaatgaagtgaccttttttctacgtgcgcttttggtttctcagacgtaagagggggtcacacttgacaaaaattagaccttgacctaaagccctaggcacgttgtccatgctgcatctgtatacaaacatacccatgacaatcagtgacacatcattatcagacatttcattccatccattttcaaatttatagtataaagattttgattataaaataattgaaatgtgaataaccctgactttcttggaatgtattaaacttgaaatggaaagcaaagtcaattacaaatacattcaattactttataaaaattaatttaaatgcagctaattacaatacatttttcaatgatcccatttct
gi|30 : accaatgtaattatagattacttttgagaatatattaaatacttttcatttaattatgtttatttcaaacaccttgagcaacatatacatatacaacaacaaagcaatgcaatcttatttcacaattttgagcttatttccatcaaatactagtagaaattcgaagtgtttgcatttggtgttaaaatt-GTATTTTTG--TTTTCAGGTCTGAACAGAGT--TCACATTTGAACAA-A--------------aaatttatagtataaagattttgattataaaataattgaaatgtgaataaccctgactttcttggaatgtattaaacttgaaatggaaagcaaagtcaattacaaatacattcaattactttataaaaattaatttaaatgcagctaattacaatacatttttcaatgatcccatttct
gi|31 : gtgatctttattaaACCTCGAGGCCTGCTTTGATTCG----TTTTCAGAC-GTT----T---T-GAGGAA--TTCTGCT-AAA-AT-ATGGCT------T------TG-------attcaacctttgacttctaccctaggc
gi|32 : ttAATT-A-CAAGT-----ACACCCA----ATTACTTT-ATAAGAATGTA-TTCA-AATGCaaatttccactgtttt
gi|33 : atgcaactttT-GTAGC--CGTGCCGCATCAAA------------TAT--ACAAACATATTAATTAGGACATCAAGT-----TATGGCtgcta
gi|34 : AAATATGTCCGAAGGACATGAA---TGC---CCCACCCTTGT-Gt
gi|4 : acagaataaaaccaaactagATT-G-TAATT-----GCTCTCA----ATTACTTT-G-AAGACTGTA-ATCA-AATACAT-TT-C--AATTACTGC--TTTATTTCAGAATGTCTT--GGAAGA------CTTGACCTTGAAGCCTGCTCTGATTCA----TCTTCATGA-TTG----T---T-GAGTAT--TTCTGCTAAAA-GT--TGACT------T----------------CAGA---AT-TTTC--T--AAAATGTTCAG-GTC-TC--TA----TA---TAT---------A----GCTAATG-T------------------A-----------T------------T---GT-----TTGAATA---AAGTGAACTCTTAA---------TCAG-GAGGTTGT-T-CTACCCCGTGTCTTTG--TTCTTTGATATGAGAGGGGT--TCACTCCTGAACAA-A--------------C-TTATTGCCCTT-GGCACT-GGGGT--CATGCTCCACCAAA------------AAT--ATAGACATAATAA----GACATCTCAT-----TAATGCATAAATACACCATGTGT-A-A-CACTGAAATAGTTTA-------CACCATTATCATCAGACACTTTCAT----TAC---AT-CATTGTC
gi|5 : -A-----------A------------T---AT-----CTGAATG---AAATGAACTTTCAC---------T-----------------ACCT-GTGCA---G--T---CAGGTATGGAAAGGCT--TCACACATGAACAC-A--------------A-T--CAGCCCTT---CACTTATAGCACCCTGCTGTATAAAGCAGTCATG----TAT--ATAGACATAAGGA----AACATATAGTTATTACATCACATAAACACCCCATG-AC-ATA-CTGTGAAACAGTCTAA------CACCATTATTATCAGACAATTTCATAATGTTC---AT-CATTTTCgaactattaggttggaagatagaatgtaattaaaaagtaattgaaatcttgaccttttagtaatgtatttgaatatatccaattatatgtaattgaaagatttgacaattacaaatgcatctaaatactttataaaatgaatttaaagcagctgattaccgttcaatctt
gi|6 : gaatatACAAATATGTCCGTAGGACATGAA---TGG---CTTGCCCGTGA-GACAGTT-G-TAAT------GCTATCA----ATTACTTT-A-AAAAATGTA-AT------ACAT-TT-C--AATTGCTGAAGTTTATATCAAAATGTTTT--GGAAAA------CATGACCTCAAAGCCTGCTTTGATTCG----TCTTCAAGC-ATC----T---T-TAGGAA--TTCTACTAAAG-AT-ATGGCT------T------TG-------CCAGATTCCT-TTTC--T--GGCATACGAAA-TTCGTC--CA-G--TA---CATTT-T----AA----G-TCATG-TT---------------G-A-----------G------------T---AT-----CCCAATG---AAGTGAACTCTTAC---------TC-A-ATTATTTT-TGCAACCT-ATGCCTTTG--TTCTCGGGTATGAGAGGAGT--TCACATCTGAACAA-A--------------TAT-ATAGCCCTG-GGTACT-ATGGT--CATGCTGCAGAAAG------------TAT--ACAGACATAAGGA----GACGTCTAAT-----CATTGCATTAACACCTCATG-AC-A-ACCAGTGAAATAGTCTAACAACATCACCATTATTATCCGACTTTTTCAT----TCCCGGAT-CATTTTCaaatttttaaatctgaataaagaatgtaattgtaattgatactactaagtaattgagatgtacattgcaattgaaaatgcttaactttttatgtaatgtatttaaatacattcaattacttgaaattgaaagctaagttcaatacaattacatccaattactttataaaaatgtttcaaaatacagctaattacatttttttgttgctaccccatccctgcaacatacatatatctacagcacctgtatacatgtat
gi|7 : GACCTCGAAGCCTGCTTCGATTCA----TCTTCACGC-TTTCATGT---T-GAG
gi|7 : A-TTCATCTTCACGCTTT---CATGT-T----GA----G-CTCTGATT---------------GTA-----------G------------T---AT-----CTGAATGTTGAAGTGAACTCTTGCAGATAGTTTTC-A-GTT-TTTT-T-CTACCT-GTACCTTTG--TTTTCAGGTAT--GAGGAGTAATCACACTTTAACAA-A--------------C-T-A------TG-GACACC-GTGGC--CATGCTGCACCAAGTACCCCACCAGCTAT--ATAGACATCATAG----GACATTTAAT-----CATTGCATTAACACCCAATG-ACAA-A-CAGTGGAACAGTCTAA------TACCATTATTATCAG--GCTTTCAT----TCC---AT-CATTTTCctctgattgtagtatctgaatgttgaagtgaactcttgcagatagttttcagtttttttctacctgtacctttgttttcaggtatgaggagtaatcacactttaacaaactatggacaccgtggccatgctgcaccaagtaccccaccagctatatagacatcataggacatttaatcattgcattaacacccaatgacaaacagtggaacagtctaataccattattatcaggctttcattccatcattttcaaactttttaagttcgaataattaagaatgcaattgaaaagtaactgaaatatttacttatcatgaacgtacatgtattcaaataaagcaaagtcaattacaaata
gi|8 : gacctcgaagcctgcttcgAAAT-G-TAATTAATAAG-TCTCA----ATTACTTT-G-TAAATTGCA-ATCA-AATTTAT-TT-C--AATTAAAAAAATT-ATTTCAAAATGTCTT--GGAAGAGTTAGACTTGACCTCGAAACCTGGTTTGATTTG----TTT---AG--TTT----T---T-GAGAAA--CTTTGCTAA---------------------------------------TGCGT-TTCC--T--GCGACGTGGAACTTCATA--CA-G--TAGTACATTT-T----AAATAAG-TCATG-TT---------------T-T-----------G------------TTTAATT----CTGAATA---AAATAAACTCTTAC---------TC-G-GGTATTTTAT-CT-CCT-GCCCAATTG--TGTTCAGGTAAGAGAGGAGG--TCACACCTTAACA-------------------T-ATAGCCCTG-GGCACT-CGGGC--CATGCTGCATTAAG------------aaactttttaagttcgaataattaagaatgcaattgaaaagtaactgaaatatttacttatcatgaacgtacatgtattcaaataaagcaaagtcaattacaaata
gi|9 : gcaatttaattaaaaagtacctttatgaatttgtcaattactcgctcttacaattacaataatttaaaaaAA---TGT---CCCGCCCATTT-GAAAATT-G-TAATT-----GCTATCA----ATTACTTT-G-AAGAATGTA-TTTA-AATACATATTGC--AATTACTGAAGTTTATTTCAAAATATCTT--GGAAGA------CGT--TCTTGAAGCCTGCTTTGATTCA----TCTTCAAGC-TTC----T---T-GAGGAA--TTCTGCTAAAA-AT-------------T------T--------CCAGATGCAT-TATC--T--GAGACATGAAA-TTCATC--CC-G--TA---CATTT-G----AA----G-ACAAG-TT---------------G-A-----------G------------T---AT-----CTGAATG---AATAGAACTCTTA-------------G-GTATTTTT-T-CTACCT-----------------AGATATGAGATGGGT--TCATACCTAAATAATG--------------C-T-ATAGCCCTG-GGCACT-GTGGC--CATGCTGCATCAAG------------TAT--ATAGACATAATGA----GACATCTGAT-----TATaa
blockSeqs : AAT AAAA T T T T CATAA TACT T T C A A A G GA A CC GTTAGA ATCA T CATG AGG A GT C TTGGCTTTGAAAATTT C A CG CA A C TT CGCT GTA TTTAA ATAA C C A CAGGTTAACGTTGCTGAGTATGTGG TTG CAGATAGTTTTCAGTT A G CG GT A AA T AATTAGACCTTGACCT TA A T AC TACCCCACCAGC AA T TATTAATTAG TATTAC AC ACAAT A CAACAT A AATG CGG C
blockSeqs : . C T . . . AATAA . . . . T A . . . T . . . . . . . . . ATGGCTTCCAAATTT A . G . T . . G . TTTAA . . A . CAGTTAACGTTCTGAGTATAGTGT . CTCACGTAA . . G . G . . ATTAGACCTTGACCT TA A . . CAGTCATG . C TAATGA A AC ACAAA A . A . . .
blockSeqs : . C A . . . . . . . . A A . . . A . . . . . . . . . TAAGGTTTGAAATTT C . . . A . . G . GT . . C . GAGTTCTGAATATGATAT . CTCTGGTTA . . G . G . . ACCTC CA A . . . . T TAATAA A AT ACAAT T . C . . .
blockSeqs : . C A . . . . . . . . A G . . . A . . . . . . . . . CTGGCTTTAAAATTT A . . . T . . G . T . . C . GATTCTGAATGAAATAT . CTCTGGTTA . . G . G . . CTT AA G . . . . C TAAGGA T AC TGTAA G . T . . .
blockSeqs : . C T . . . . . . . . A A . . . A . . . . . . . . . TTGAAATTT A . . . A . . G . C . . C . TTGTTTAATT . ATCAGGAGG . . T . A . . CTT AA A . . . . T TAAGGA C AC ACATA A . C . . .
blockSeqs : . G T . . . . . . . . A G . . . T . . . . . . . . . ATGGCTTTG G . . . A . . G . C . . A . GTAGTAT . CTCCGGTA . . G . A . . CCT TT A . . . . T TCATAG T AC ACAAC A . C . . .
blockSeqs : . T G . . . . . . . . A A . . . A . . . . . . . . . ATGGCTTTG T . . . T . . G . T . . C . GAGTAT . CTCAATTA . . G . A . . CTT CA T . . . . C TAATGA T . ACAAA A . C . . .
blockSeqs : . . A . . . . . . . . A G . . . A . . . . . . . . . TGACTT T . . . T . . T . G . . T . GAGTAT . CTCGGGTA . . G . A . . TAT TA T . . . . T A C . AA A . C . . .
blockSeqs : . . . . . . . . . . . A A . . . T . . . . . . . . . AT A . . . A . . C . T . . C . GAGTT . GGTAT . . G . T . . AT TA G . . . . T A C . AA . . A . . .
blockSeqs : . . . . . . . . A A . . . A . . . . . . . . . CG C . . . A . . C . T . . C . ATTGT . CT . . A . A . . CT TA G . . . . . . T . GC . . T . . .
blockSeqs : . . . . . . . . A T . . . A . . . . . . . . . TT G . . . A . . G . T . . . . ATAT . . . . G . G . . CT T G . . . . . . . . . C . . .
blockSeqs : . . . . . . . A A . . . A . . . . . . . . . . A . . . A . . G . G . . . . ATAT . . . . G . A . . T . G . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . . G . . . . . . A . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . A
blockSeqs : . . . . . . . . . . .
blockSeqs : . . .
blockSeqCons : A* TGGCTTTGATTT***************** T***** CTCGGTA************ G* CCT*************** TA G* ACAAA***
originalCons : ACAAATATGTCCATAGGACATGAA---TGC---CCCGCCCNTGT-GACAATT-G-TAATT-----GCTCTCA----ATTACTTT-G-AAGAATGTA-ATTA-AATACAT-TT-C--AATTACTGAAGTTTATTTCAAAATGTCTT--GGAAGA------CTTGACCTCGAAGCCTGCTTTGATTCG----TCTTCAAGC-TTT----T---T-GAGGAA--TTCTGCTAAAA-AT-ATGGCT------T------TG-------CCAGATGCNT-TTTC--T--GGCATATGAAA-TTCATC--CA-G--TA---CATTT-T----AA----G-TCATG-TT---------------G-A-----------G------------T---AT-----CTGAATG---AAGTGAACTCTTAC---------TC-G-GTTATTTT-T-CTACCT-GTGCCTTTG--TTCTCGGGTATGAGAGGGGT--TCACACCTGAACAA-A--------------C-T-ATAGCCCTG-GGCACT-GTGGC--CATGCTGCATCAAG------------TAT--ATAGACATAATGA----GACATCTAAT-----CATTGCATAAACACCCCATG-AC-A-A-CAGTGAAACAGTCTAA------CACCATTATTATCAGACACTTTCAT----TCC---AT-CATTTTC
finalCons : ACAAATATGTCCATAGGACATGAA---TGC---CCCGCCCNTGT-GACAATT-G-TAATT-----GCTCTCA----ATTACTTT-G-AAGAATGTA-ATTA-AATACAT-TT-C--AATTACTGAAGTTTATTTCAAAATGTCTT--GGAAGA------CTTGACCTCGAAGCCTGCTTTGATTCG----TCTTCAAGC-TTT----T---T-GAGGAA--TTCTGCTAAAA-ATTGGCTTTGATTT-----------------CCAGATGCNT-TTTC--T--GGCATATGAAA-TTCATC--CA-G--TA---CATTTT-----AA----G-TCATG-TT---------------G-A-----------G------------T---AT-----CTGAATG---AAGTGAACTCTTACTCGGTA------------TTTT-T-CTACCTG-TGCCTTTG--TTCTCGGGTATGAGAGGGGT--TCACACCTGAACAA-ACCT---------------ATAGCCCTG-GGCACT-GTGGC--CATGCTGCATCAAG------------TAT--ATAGACATAATGA----GACATCTAAT-----CATTGCATAAACACCCCATGACAAA---CAGTGAAACAGTCTAA------CACCATTATTATCAGACACTTTCAT----TCC---AT-CATTTTC
6 sequences could not be aligned to this reference sequence:
Unaligned ( gi|18 ): TTGATCAGCAATATGATGCTTCAAGTTCATTTTTTCTTCGTGTAGAAAATTTATAAATGATCTCTCACATCATTTGATGTGTCTTCACAAAGATGTACTTGAACTTTAATAATCATATTAGGATAACAAACACAGTTTGTAATCCATATCCACGATGAAAACAGTTTTTAATTGGCATTTATTCAATGTGACTAACTGTGAC
Unaligned ( gi|23 ): ATTTTTAATTACCCCATCTTTGATCAGCAATGTGATGTTCCAAATTCATTTTCTCTGTATGTAGGAAATTTATAGATGATATCTCATATTATTTAACGTGTCTTCACAAAAATGTTTTTGAAAACTTATTAAAAAAACGTTTGTAA
Unaligned ( gi|24 ): ATACGTACTGAAATGCGGCTTATGACATTTTCAATTACTCCATCCTTGATCAGCAACATGTTTTAAACTTTTTCTAGAAAAATGCAGCAGATTTACAGATGACCTCACATCATTTGATGTGTCTTCACAAAA
Unaligned ( gi|25 ): AAATGTACATTTGTAAATGAAAAGTAATTGAAACCTTTAACTTTTTAATAAATGTATTTGAATACATTATATCCATTTAATTACTTATAATTAAAAGCTAAGTCAACCATAAATACATCCAGTTACTTTCT
Unaligned ( gi|26 ): AATGTACATTTGTAAATGAAAAGTAATTGAAACCTTTAACTTTTTAATAAATGTATTTGAATACATTATATCCATTTAATTACTTATAATTAAAAGCTAAGTCAACCATAAATACATCCAGTTACTTTCTA
Unaligned ( gi|35 ): AATACATCCAATTAATCAATTAAAATAGCCCGACCTT
Alignments
lowQualScore : 1111 11111 777777777777777777777777 111111 66666666666666666666666666666666666666666666666666666 4444444444444444444444 3333333333333 11111111 111111111111 1111111111 111111
lowQualScore : 777 2222 0 2 3 2 2 11111 0 5555 2 2 2 44 1 2 2 33 1 44 888888 6666 2 6666 555 2 44 111111111111111111111111 2 1 2 66 33 0 1 2 33 6666 444 5555 333333 6666 3 2 3 33333333333333333333333333333333333333333333333333333 555 0 1111111111111111111111 3 3 22 33 2 0 33 2 2 0000000000000 1 3 1 1 2 33 11111111 777777777777 44 2 0 0000000000 0 000000 4 22 5 4 888888 2 6666 555 3
lowQualScore : ... .... . . . . . ..... . .... . . . .. . . . .. . .. ...... .... . .... ... . .. ........................ . . . .. .. . . . .. .... ... .... ...... .... . . . ..................................................... ... . ...................... . . .. .. . . .. . . ............. . . . . . .. ........ ............ .. . . .......... . ...... . .. . . ...... . .... ... .
lowQualScore : 000 7777 7 4 3 4 4 88888 3 3333 5 5 5 44 5 7 7 77 1 22 888888 1111 9 1111 000 9 22 999999999999999999999999 9 0 9 33 99 4 9 5 44 2222 777 7777 333333 1111 1 8 1 22222222222222222222222222222222222222222222222222222 000 2 6666666666666666666666 1 1 99 77 9 4 99 9 9 4444444444444 4 1 5 9 9 99 22222222 111111111111 66 9 4 4444444444 2 333333 3 55 4 5 888888 1 5555 444 1
consensus : ACAAATATGTCCATAGGACATGAA---TGC---CCCGCCCNTGT-GACAATT-G-TAATT-----GCTCTCA----ATTACTTT-G-AAGAATGTA-ATTA-AATACAT-TT-C--AATTACTGAAGTTTATTTCAAAATGTCTT--GGAAGA------CTTGACCTCGAAGCCTGCTTTGATTCG----TCTTCAAGC-TTT----T---T-GAGGAA--TTCTGCTAAAA-AT-T--GGCTTT--G---A--TTTCCAGA-TGCNT-TTTC--T--GGCATATGAAA-TTCATC--CA-G--TA---CATT----T-T----AA----G-TCATG-TT---------------G-A-----------G------------T---AT-----CTGAATG---AAGTGAACTCTTAC---------TC-G-G-T-A--TTTT-T-CTACCT-GTGCCTTTG--TTCTCGGGTATGAGAGGGGT--TCACACCT-GAACA-AA-------------CCT-ATAGCCCTGGGCACT-GTGGC--CATGCTGCATCAAG--------TA------------T--ATAGACATAATGA----GACATCTAAT-----CATTGCATAAACACCCCATGACGAACAGTGAAACAGTCTAA------CACCATTATTATCAGACACTTTCAT----TCC---AT-CATTTTC
Reference ( family-1089 ) : ACAAATATGTCCATAGGACATGAA---TGC---CCCGCCCNTGT-GACAATT-G-TAATT-----GCTCTCA----ATTACTTT-G-AAGAATGTA-ATTA-AATACAT-TT-C--AATTACTGAAGTTTATTTCAAAATGTCTT--GGAAGA------CTTGACCTCGAAGCCTGCTTTGATTCG----TCTTCAAGC-TTT----T---T-GAGGAA--TTCTGCTAAAA-AT-T--GGCTTT--G---A--TTTCCAGA-TGCNT-TTTC--T--GGCATATGAAA-TTCATC--CA-G--TA---CATT----T-T----AA----G-TCATG-TT---------------G-A-----------G------------T---AT-----CTGAATG---AAGTGAACTCTTAC---------TC-G-G-T-A--TTTT-T-CTACCT-GTGCCTTTG--TTCTCGGGTATGAGAGGGGT--TCACACCT-GAACA-AA-------------CCT-ATAGCCCTGGGCACT-GTGGC--CATGCTGCATCAAG--------TA------------T--ATAGACATAATGA----GACATCTAAT-----CATTGCATAAACACCCCATGACAAACAGTGAAACAGTCTAA------CACCATTATTATCAGACACTTTCAT----TCC---AT-CATTTTC
gi|1 : AAAAATGTCCATAGGACATGAA---TGT---C------TTGT-GACAATT-G-TAAAT-----GCCCTCA----ATTACTTT-G-AAGAAGGTA-ATTTTGATACAT-TT-C--AATTACTGCAGTTTATTTCAAAATGTCTT--GAAAGA------CTTGACTTCGAAGCCTGCTTT-----G----TCTTTAAAC-TTT----T---T-GAGAAA--TTCTGCTAAAA-AGAT--GACTTA--GAA-A--TTTTCATA-TTTCT-TTTC--T--AATATATGACA-TTTATC--CA-C--TA---GATTTTAAT-T----AA----G-TCATG-TT---------------G-A-----------G------------T----T-----CTAAAT
gi|1 : actgtacatcaaaacatgattccagtttatatttgttaaaaaaagaacaaaTA--TTCTCCTGTGTGAACG------TCGCACCT-GAAAA-CC-------------CCT-ATAGC-------ACT-GTGGC--------------AG--------TA------------T--TTAGACACAGTGA----TACATCTAAT-----CATTGCATTACCACCTC-------------AAACAGTCGAA------CACCATTATTATTAGAGACTTTCAT----TCC---AT-TATTTTCattctcctgtgtgaacgtcgcacctgaaaacccctatagcactgtggcagtatttagacacagtgatacatctaatcattgcattaccacctcaaacagtcgaacaccattattattagagactttcattccattattttcaaacttttaaatttgaataaagactgtacttgaaaagtaattgaaatattgacctttttatgaatgtaaagcaaagtcagtcacaaatacatccaattactttatgaaacgtactagtatttaaatgcaacttaaattaccccatctttgaccagctgtatgatgattcaagttcattatctctgtatatagcaaatgtatagatgatctctcatatcatttgatgtgttttcacaaagatggatttgaaagttaataaaa
gi|10 : actgtacatcaaaacatgattccagtttatatttgttaaaaaaagaacaaaaaaaatgtccataggacatgaatgtcttgtgacaattgtaaatgccctcaattactttgaagaaggtaattttgatacatttcaattactgcagtttatttcaaaatgtcttgaaagacttgacttcgaagcctgctttgtctttaaactttttgagaaattctgctaaaaagatgacttagaaattttcatatttcttttctaatatatgacatttatccactagattttaattaagtcatgttgagttctaaaAAATGTATCCATAGGACCTAAA---CGC---CCCGC--TTGT-GACAGTT-G-TAATT-----GCTCTTATACTAGTACTTT-G-AAGAAAGTA-ATT-------------------T-CTGAAGTTTATATCAAAATATCTT--GGAAGA------CTTGACCTCGAAGCTTGCTTTGATTTG----ACTTCAAGCTTTT----T---T-GAGAAA--TTCTGCTATAA-ATAT--GGCTTCCAA---A--TTTCCAGA-TTCCT-TTTC--T--AGCATATGAAT-TTCATC--CA-G--TA---CATT----T-T----AA----G-TCATG-TT---------------G-A-----------GTTCTGAATATGAT---AT-----CTGAATG----AGCGAACTCTTAC---------TCAG-G-T-T--TTTT-T-TAATCT--TGTCTTTG--ATCTCAAATATGAGAGaaacttttaaatttgaataaagactgtacttgaaaagtaattgaaatattgacctttttatgaatgtaaagcaaagtcagtcacaaatacatccaattactttatgaaacgtactagtatttaaatgcaacttaaattaccccatctttgaccagctgtatgatgattcaagttcattatctctgtatatagcaaatgtatagatgatctctcatatcatttgatgtgttttcacaaagatggatttgaaagttaataaaa
gi|11 : gaatgatgctaccgctctgaaagatggtgatcgctagT-G-TAGTT-----GCTCTCA----ATTACT-----------ATA-ATTA-GATACAT-TT-C--GATAATTGATTTCTATTACAAAATGTCTT--GAAAGA------CTTGACCTCGAAGCCTGCTTTAATTCA----TCTTCAAAC-TTT----T---T-GAGGAA--TTTTGCTGAAACAT-TAAGG-TTT--G---AAATTTTCAGA-TGCAT-TTTC--T--ACCTTCTGAAA-TTCATC--CA-G--TA---CAAA----T-C----AA----G-TAATT-TT---------------G-ATTCTGAATGAAA------------T---AT-----CTGAATG---AAGTGAACTATTAC---------TC-ACG-T-A---ATT-C-CTACAT-GTGCCTTTG--CTCTCGGGTATGAGAGGGGT--TCACACCTAAAAAA-AA-------------CCTCAT----CTAGGCACT-ATAGC--TATGCTGCAT
gi|12 : ACAACTAGG--CACAGGACATGAT---T------TTGCCTTTGT-GACAATT-G-TAATT-----GCTCTCA----ATCACTTT-T-AAGAATGTACATTT-AAT---T-TT-AGAAAATACT--------TTTCAAC-TG-CTTCCGGAAGA------CTTGACCTCGAATCCTGCTTTGAA-AG----TCTCCAAGA-ATT----T---T-GAGGAA--TTCTGCTAAAT-AT----------------------CCATA-TTCCT-TTAT--T--AGCATATGAAA-TTAATC--CA-G--TT---TATT----T-C----AA----G-TCATG-CT---------------G-A-----------G------------T----T-----CTGACTG---
gi|13 : actgcatagataaataatgcttctgttaaatattgttaaaaagatatatcTATGAAA-TTCATC--TA-G--TA---CACT----T-TTTAAAA----G-T-ACG-TT---------------A--------------------------T---AT-----ATGAATG---AAGTGCACTCTTAC---------TCTG-G-TTA--TTTT-T-CTACCT-GTGCCTATG--TTCTCGGATATGAGAGGAGT--TGACACTT-AATCA-AG-------------CTT-ATAGCGCTAGAGACT-GTAGC--CATGCTGCATCAAA--------TA------------C--A-----------A----GACATCTAAT-----AATTGTATAAAC-C----TGATGAACAGTGAAAC-GTCTTA------TACCATTATTATCAGAAAACGTCAT----GCC---AT-CATTTTCtaatttatgaatgaag
gi|14 : tagatatggaaattgaataatcctcattagc--T--AGCTTATGAAA-TTCATC--TA-G--TA---CACT----T-TTTAAAA----G-T-ACG-TT---------------A--------------------------T---AT-----ATGAATG---AAGTGCACTCTTAC---------TCTG-G-TTA--TTTT-T-CTACCT-GTGCCTATG--TTCTCGGATATGAGAGGAGT--TGACACTT-AATCA-AG-------------CTT-ATAGCGCTAGAGACT-GTAGC--CATGCTGCATCAAA--------TA------------C--A-----------A----GACATCTAAT-----AATTGTATAAAC-C----TGATGAACAGTGAAAC-GTCTTA------TACCATTATTATCAGAAAACGTCAT----GCC---AT-CATTTTCaaaa
gi|15 : agatatggaaattgaataatcctcat---AAGTGAACTGTTAC---------TCCG-G-T-A--TTTT-T-CTACTT-TTTCCTTTG--TTTTCAAGGATGA-AG------TCACACCT-GAGTA-AA-------------CCT-ACAGCCCTGAGCACT-GTGGC--CATGCTGCATCAAG--------TA------------TAAATAGACATAATGA----GACATATGAT-----TATTGCATAAACACCTCATGGCAAATAGTA--------TAA------CACCATTTTCCTCGTACACACTCAT----TCC---AT-CATTTTCaa
gi|16 : AAATAAGCCCATAGGACATGAA---TGC---CCTGCCCATGT-GACAATC-A-TAATT-----GCTTTTA----ATTACTTT-G-AGGACTGTA-ATTA-AATACAT-TT-C--AATCACTGAAGTTTATTTCAAAACGTCTT--GAAAGA------CTTTACCTCAAAGCCTGCTTTGATTCA----CCTTTAAAC--TT----T---T-GAGGAA--TTCTGCTAAAA-A--------TTT--GAA-A--TTTCCAGA-TGCAT-TTTC--T--GGGATATGAAA-TTCATC--CA-G--TA---CATT----aagcttttaagtttacatatgttgatactagtaagtaatatgattgaaaagtaattgaaatcttgac
gi|17 : agaactagTGTGTCCATAGGACCTGAA---TG--------------T-GA-AATC-----ACT-----GCTCTCA----ATTACTTT-G-AAGAAAGTA-ATTA-AATACAT-TT-C--AATTACCAAAGTTTAATTC-AAATGTCTT--GGAAGG------TTTGACCCCAAAGGCTGCTTTGATTCGATCATCTTCAAGC-TTT----TAGGTAGAGGAA--TTCTGCAAAAA-TT-T--GGCTTT--GAAAA--TTTTCAGA-TGCAT-TTTC--TCAGACA-ATGATG-TTCATT--CA-
gi|19 : -GAAAAAT-G-TAATTCATAAG-TCTCA----ATTGCTTT-G-AA-AATGTA-ATTA-AATGTAT-TT-C--AATT---GAAGTTTATT-CAAAATGTCTT--GGAAGA------CT-------------CGCTTTGATTTG----TCTTCATTG-TTT----A---T-GAGG-A--TTTTGCTAACA---------CGT---------------AAACTGCGT-TTCC--T--GGC--GTGGAA-TACATA--CA-T--TA----ATT----T-T----AA----
gi|2 : acaattacattgatttaaaCAAT--G-TAATT-----------A----ATTACTTTTG-AAGAATATA-ATTA-AATACAT-TT-C--ATTTAATGATGTTTATTTTAAA
gi|2 : tttcaattgtattgatgtttctttcaattacttgctatgataattacattgattttaac-T--GGCTTT--A---AAATTTCCAGA-TGCTT-TTTTCGT--GACTTA--AAA-TTTACC--CA-C--TG---CATT----T-G----AA----G-CCATG-TTCAGTTAACGTTCT--G-A-----------G------------T---ATAGTGTCTGAATG---AAGT-AACCTTTA------------------------TT-T-CTACGT-GCGCTTTTG--TTCTCAGACGTGAGAGGGGT--TCACACTT-GAACA-AAATTAGACCTTGA-CCT-AAAGCCCTAGGCACG-TTGTC--CATGCTGCATCTCG--------TA------------T--ACAAA--------------------------------CATA----CCCCATGACAATCAGTGA----------------CAC-ATCATTATCAGACATTTTCAT----TCC---AT-CATTTTCcaccttgagcacatacatatacaaacaaagcaatgcaatcttatttcacaatttcgagcttatttccatcaaatactcgtagattcgaagtgtttgcatctggctttaaaatttccagatgcttttttcgtgacttaaaatttacccactgcatttgaagccatgttcagttaacgttctgagtatagtgtctgaatgaagtaacctttatttctacgtgcgcttttgttctcagacgtgagaggggttcacacttgaacaaaattagaccttgacctaaagccctaggcacgttgtccatgctgcatctcgtatacaaacataccccatgacaatcagtgacacatcattatcagacattttcattccatcattttcaaatttatagtataaagattttgattataaaataattgaaatgtgaaaaaacccttgactttcttggaatgtattaaacttgaaatggaaagcaaagtcaattacaaatacattcaattactttataaaaatgaatttaaatgcagctaattacaattacattttcaatgatcctatccctggctcatatgta
gi|20 : tttcaattgtattgatgtttctttcaattacttgctatgataattacattgattttaaccaatgtaattaattacttttgaagaatataattaaatacatttcatttaatgatgtttattttaaacaccttgagcacatacatatacaaacaaagcaatgcaatcttatttcacaatttcgagcttatttccatcaaatactcgtagattcgaagtgtttgcatc-GACAATTTG-TAATT-----GCTCTCA----ATCTCTTT-G-AAGAATGTA-ATT-------------------TACTAAAGTTCATGTCAATATGATTT--TGAAGA------CTTGACTTCGAAGTTTGCTGTAA-TAG----TCTCCAAGC-TTG----T---A-GACGAAGTTTTTGT----A-AT-T--------------A--CTTCCATA--GCTT-TCTC--aaatttatagtataaagattttgattataaaataattgaaatgtgaaaaaacccttgactttcttggaatgtattaaacttgaaatggaaagcaaagtcaattacaaatacattcaattactttataaaaatgaatttaaatgcagctaattacaattacattttcaatgatcctatccctggctcatatgta
gi|21 : aaactagaaataagtccacagTGAAACAATCTAA------CACCATTATTA---AATACTTTCAT----TCC---AT-CATATTC
gi|22 : caataattcAATTTGTCCATAT-ATATGAAAATTGAAAACCCACCCATGTTGATA-TT-G-TAATT-----GCTCTCA----ATTACTTT-G-AAGAGTGTG-ATTA-AATGCAT-TT-C--AATTACTGAAGTTTATTTAAATATGTCTT--GGAAGA-------TTGACCTCAAAATCTGCTTTGATTaaacttttaagtttgaataaagaatacaattgtataaatgtatttaaatacattcaattccttctatttagaaggaaaatcaattacaaatacatccaattactttatgaa
gi|27 : aactaggACACTGAAAATGTCTTA------CACCATTATTTTCCGACACTTCCAG----TCT---AC-CACTTT
gi|28 : AAATATGTCCATAAGACAGAAA---TGC---CCCACCCTTGT-GACAATT-ATTAATT-----GCacaggtggaataaagaatataattgtaatcaaaaatgcattgctatttaagtaatttatctagatacattaaa
gi|29 : cttgacttaccttatgaattctctatattgtgttcaaactagGA----GACATTTAAT-----CATTGTACAAACACCGTATGACAAACAGTGAAACGGTCTAA------CACCATTATTATCTGACACTTTCAT----TCC---AT-CAATT
gi|3 : CAAT--G-TAATT-----A---TAG----ATTACTTT-T-GAGAATATA--TTA-AATACTT-TT-C--ATTTAATTATGTTTATTTCAAA
gi|3 : acTTCCAGA-TGCTTATTTCG-T--GACTTA--AAA-TTTACC--CA-C--TG---CATT----TGT----AA----G-CCATG-TTCAGGTTAACGTTGCTG-A-----------G------------T---ATGTGG-CTGAATG---AAGTGACCT--------------------------TTTT-T-CTACGT-GCGCTTTTGGTTTCTCAGACGTAAGAGGGGG--TCACACTT-GA-CA-AAAATTAGACCTTGACCT-AAAGCCCTAGGCACG-TTGTC--CATGCTGCATC-----------TG------------T--AT----------------ACA---AA-----------CATA-----CCCATGACAATCAGTG--ACA---------------CATCATTATCAGACA-TTTCAT----TCC---ATCCATTTTCcaccttgagcaacatatacatatacaacaacaaagcaatgcaatcttatttcacaattttgagcttatttccatcaaatactagtagaaattcgaagtgtttgcatttggtgttaaaattccagatgcttatttcgtgacttaaaatttacccactgcatttgtaagccatgttcaggttaacgttgctgagtatgtggctgaatgaagtgaccttttttctacgtgcgcttttggtttctcagacgtaagagggggtcacacttgacaaaaattagaccttgacctaaagccctaggcacgttgtccatgctgcatctgtatacaaacatacccatgacaatcagtgacacatcattatcagacatttcattccatccattttcaaatttatagtataaagattttgattataaaataattgaaatgtgaataaccctgactttcttggaatgtattaaacttgaaatggaaagcaaagtcaattacaaatacattcaattactttataaaaattaatttaaatgcagctaattacaatacatttttcaatgatcccatttct
gi|30 : accaatgtaattatagattacttttgagaatatattaaatacttttcatttaattatgtttatttcaaacaccttgagcaacatatacatatacaacaacaaagcaatgcaatcttatttcacaattttgagcttatttccatcaaatactagtagaaattcgaagtgtttgcatttggtgttaaaa-GTATTTTTG--TTTTCAGGTCTGAACAGAGT--TCACATTT-GAACA-AA-------------aaatttatagtataaagattttgattataaaataattgaaatgtgaataaccctgactttcttggaatgtattaaacttgaaatggaaagcaaagtcaattacaaatacattcaattactttataaaaattaatttaaatgcagctaattacaatacatttttcaatgatcccatttct
gi|31 : gtgatctttattaaACCTCGAGGCCTGCTTTGATTCG----TTTTCAGAC-GTT----T---T-GAGGAA--TTCTGCTAAAA-TA-T--GGCTTT--GAA-A--TTTCCAattcaacctttgacttctaccctaggc
gi|32 : ttAATT-A-CAAGT-----ACACCCA----ATTACTTT-ATAAGAATGTA-TTCA-AATGCctgtttt
gi|33 : atgcaactttT-GTAGC--CGTGCCGCATCAAA--------TA------------T--ACAAACATATTAATTAGGACATCAAGT-----TATGGCtgcta
gi|34 : AAATATGTCCGAAGGACATGAA---TGC---CCCACCCTTGT-Gt
gi|4 : acagaataaaaccaaactagATT-G-TAATT-----GCTCTCA----ATTACTTT-G-AAGACTGTA-ATCA-AATACAT-TT-C--AATTACTGC--TTTATTTCAGAATGTCTT--GGAAGA------CTTGACCTTGAAGCCTGCTCTGATTCA----TCTTCATGA-TTG----T---T-GAGTAT--TTCTGCTAAAA-GT-T--GACTT--------------CAGA----AT-TTTC--T--AAAATGTTCAG-GTC-TC--TA----TA---TAT-------------A----GCTAATG-T------------------A-----------T------------T---GT-----TTGAATA---AAGTGAACTCTTAA---------TC-A-G-G-AGGTTGT-T-CTACCCCGTGTCTTTG--TTCTTTGATATGAGAGGGGT--TCACTCCT-GAACA-AA-------------CTT-ATTGCCCTTGGCACT-GGGGT--CATGCTCCACCAAA--------AA------------T--ATAGACATAATAA----GACATCTCAT-----TAATGCATAAATACACCATGTGTAACACTGAAATAGTTT-A------CACCATTATCATCAGACACTTTCAT----TAC---AT-CATTGTC
gi|5 : -A-----------A------------T---AT-----CTGAATG---AAATGAACTTTCAC---------T--------------------ACCT-GTGCA---G--T---CAGGTATGGAAAGGCT--TCACACAT-GAACACAA-------------TC----AGCCCTT--CACTTATAGCACCCTGCTGTATAAAGCAGTCATGTA------------T--ATAGACATAAGGA----AACATATAGTTATTACATCACATAAACACCCCATGACATACTGTGAAACAGTCTAA------CACCATTATTATCAGACAATTTCATAATGTTC---AT-CATTTTCgaactattaggttggaagatagaatgtaattaaaaagtaattgaaatcttgaccttttagtaatgtatttgaatatatccaattatatgtaattgaaagatttgacaattacaaatgcatctaaatactttataaaatgaatttaaagcagctgattaccgttcaatctt
gi|6 : gaatatACAAATATGTCCGTAGGACATGAA---TGG---CTTGCCCGTGA-GACAGTT-G-TAAT------GCTATCA----ATTACTTT-A-AAAAATGTA-AT------ACAT-TT-C--AATTGCTGAAGTTTATATCAAAATGTTTT--GGAAAA------CATGACCTCAAAGCCTGCTTTGATTCG----TCTTCAAGC-ATC----T---T-TAGGAA--TTCTACTAAAG-ATAT--GGCTTT--G---------CCAGA-TTCCT-TTTC--T--GGCATACGAAA-TTCGTC--CA-G--TA---CATT----T-T----AA----G-TCATG-TT---------------G-A-----------G------------T---AT-----CCCAATG---AAGTGAACTCTTAC---------TC-A-A-TTA--TTTT-TGCAACCT-ATGCCTTTG--TTCTCGGGTATGAGAGGAGT--TCACATCT-GAACA-AA-------------TAT-ATAGCCCTGGGTACT-ATGGT--CATGCTGCAGAAAG--------TA------------T--ACAGACATAAGGA----GACGTCTAAT-----CATTGCATTAACACCTCATGACAACCAGTGAAATAGTCTAACAACATCACCATTATTATCCGACTTTTTCAT----TCCCGGAT-CATTTTCaaatttttaaatctgaataaagaatgtaattgtaattgatactactaagtaattgagatgtacattgcaattgaaaatgcttaactttttatgtaatgtatttaaatacattcaattacttgaaattgaaagctaagttcaatacaattacatccaattactttataaaaatgtttcaaaatacagctaattacatttttttgttgctaccccatccctgcaacatacatatatctacagcacctgtatacatgtat
gi|7 : GACCTCGAAGCCTGCTTCGATTCA----TCTTCACGC-TTTCATGT---T-GAG
gi|7 : A-TTCATCTTCACGCTTT---CATG----T-T----GA----G-CTCTGATT---------------GTA-----------G------------T---AT-----CTGAATGTTGAAGTGAACTCTTGCAGATAGTTTTC-A-G-T-T--TTTT-T-CTACCT-GTACCTTTG--TTTTCAGGTATGAG--GAGTAATCACACTT-TAACA-AA-------------C----TA----TGGACACC-GTGGC--CATGCTGCACCAAG--------TACCCCACCAGCTAT--ATAGACATCATAG----GACATTTAAT-----CATTGCATTAACACCCAATGACAAACAGTGGAACAGTCTAA------TACCATTATTATCAG--GCTTTCAT----TCC---AT-CATTTTCctctgattgtagtatctgaatgttgaagtgaactcttgcagatagttttcagtttttttctacctgtacctttgttttcaggtatgaggagtaatcacactttaacaaactatggacaccgtggccatgctgcaccaagtaccccaccagctatatagacatcataggacatttaatcattgcattaacacccaatgacaaacagtggaacagtctaataccattattatcaggctttcattccatcattttcaaactttttaagttcgaataattaagaatgcaattgaaaagtaactgaaatatttacttatcatgaacgtacatgtattcaaataaagcaaagtcaattacaaata
gi|8 : gacctcgaagcctgcttcgAAAT-G-TAATTAATAAG-TCTCA----ATTACTTT-G-TAAATTGCA-ATCA-AATTTAT-TT-C--AATTAAAAAAATT-ATTTCAAAATGTCTT--GGAAGAGTTAGACTTGACCTCGAAACCTGGTTTGATTTG----TTT---AG--TTT----T---T-GAGAAA--CTTTGCTAA---------------------------------TGCGT-TTCC--T--GCGACGTGGAACTTCATA--CA-G--TAGTACATT----T-T----AAATAAG-TCATG-TT---------------T-T-----------G------------TTTAATT----CTGAATA---AAATAAACTCTTAC---------TC-G-GGT-A--TTTTAT-CT-CCT-GCCCAATTG--TGTTCAGGTAAGAGAGGAGG--TCACACCT-TAACA------------------T-ATAGCCCTGGGCACT-CGGGC--CATGCTGCATTAAG--------aaactttttaagttcgaataattaagaatgcaattgaaaagtaactgaaatatttacttatcatgaacgtacatgtattcaaataaagcaaagtcaattacaaata
gi|9 : gcaatttaattaaaaagtacctttatgaatttgtcaattactcgctcttacaattacaataatttaaaaaAA---TGT---CCCGCCCATTT-GAAAATT-G-TAATT-----GCTATCA----ATTACTTT-G-AAGAATGTA-TTTA-AATACATATTGC--AATTACTGAAGTTTATTTCAAAATATCTT--GGAAGA------CGT--TCTTGAAGCCTGCTTTGATTCA----TCTTCAAGC-TTC----T---T-GAGGAA--TTCTGCTAAAA-AT-T-------------------TCCAGA-TGCAT-TATC--T--GAGACATGAAA-TTCATC--CC-G--TA---CATT----T-G----AA----G-ACAAG-TT---------------G-A-----------G------------T---AT-----CTGAATG---AATAGAACTCTTA-------------G-G-T-AT-TTTT-T-CTACCT-----------------AGATATGAGATGGGT--TCATACCT-AAATA-AT-------------GCT-ATAGCCCTGGGCACT-GTGGC--CATGCTGCATCAAG--------TA------------T--ATAGACATAATGA----GACATCTGAT-----TATaa
6 sequences could not be aligned to this reference sequence:
Unaligned ( gi|18 ): TTGATCAGCAATATGATGCTTCAAGTTCATTTTTTCTTCGTGTAGAAAATTTATAAATGATCTCTCACATCATTTGATGTGTCTTCACAAAGATGTACTTGAACTTTAATAATCATATTAGGATAACAAACACAGTTTGTAATCCATATCCACGATGAAAACAGTTTTTAATTGGCATTTATTCAATGTGACTAACTGTGAC
Unaligned ( gi|23 ): ATTTTTAATTACCCCATCTTTGATCAGCAATGTGATGTTCCAAATTCATTTTCTCTGTATGTAGGAAATTTATAGATGATATCTCATATTATTTAACGTGTCTTCACAAAAATGTTTTTGAAAACTTATTAAAAAAACGTTTGTAA
Unaligned ( gi|24 ): ATACGTACTGAAATGCGGCTTATGACATTTTCAATTACTCCATCCTTGATCAGCAACATGTTTTAAACTTTTTCTAGAAAAATGCAGCAGATTTACAGATGACCTCACATCATTTGATGTGTCTTCACAAAA
Unaligned ( gi|25 ): AAATGTACATTTGTAAATGAAAAGTAATTGAAACCTTTAACTTTTTAATAAATGTATTTGAATACATTATATCCATTTAATTACTTATAATTAAAAGCTAAGTCAACCATAAATACATCCAGTTACTTTCT
Unaligned ( gi|26 ): AATGTACATTTGTAAATGAAAAGTAATTGAAACCTTTAACTTTTTAATAAATGTATTTGAATACATTATATCCATTTAATTACTTATAATTAAAAGCTAAGTCAACCATAAATACATCCAGTTACTTTCTA
Unaligned ( gi|35 ): AATACATCCAATTAATCAATTAAAATAGCCCGACCTT