lowQualScore : 111111111111111111111111111111
lowQualScore : 2 333 111 111 2222 1 1 11 1 888888888888888888888 111 111 2222222222222222222222 11111 2222 222222222 1 1111 22222 111 2222 1 11 222 1 1 111 11111 88888888888888888888888888888888888888 1 2222222222 1 222 1 2222 3333333333333333333333 222 11 11 1 11 1111 888888888888888888 11 44444444 111 11 111 11111111 11 999999999999999999999 1 2222 11 1 555555555555555555555555555555 11111 11111 111 11111 11111 4444444444 11 1 1 22222 11 11 1 88888888888888888888888888888888888 222222 1 2222 111 44444444444 6666666666666666 1 11 1 222 111 3333333 11 666666666666 1 1 5555555555 2 11 4444 2 11 11 2
lowQualScore : 0 555 555 777 1111 7 0 88 0 3 33 0 777777777777777777777 8 222 222 8 7777777777777777777777 66666 6 0000 444444444 0 9999 44444 444 88 8 8 5 8 2 3333 0 33 88 2 333 3 0 6 0 888 8 0 77777 2 88 22222222222222222222222222222222222222 0 4444444444 2 6 333 0 5555 2222222222222222222222 8 555 11 55 66 33 0 0 33 44 6666 222222222222222222 0 33 3 3 44444444 0 444 77 444 8 8 8 99 44444444 0 3 0 9999 3 3 77 333333333333333333333 0 1111 1 33 0 0 1 999999999999999999999999999999 88 7 5 44444 77 1 5 3 22222 111 66666 66666 1111111111 33 2 0 0 33333 0 33 33 0 44444444444444444444444444444444444 8 999999 5 0 1111 77 2 111 77777777777 6666666666666666 7 5 88 1 3 000 7 999 4444444 88 888888888888 6 7 3 3 6 444 6666666666 2 0 44 2 2222 0 77 88 0 6 3
lowQualScore : . ... ... ... .... . . .. . . .. . ..................... . ... ... . ...................... ..... . .... ......... . .... ..... ... .. . . . . . .... . .. .. . ... . . . . ... . . ..... . .. ...................................... . .......... . . ... . .... ...................... . ... .. .. .. .. . . .. .. .... .................. . .. . . ........ . ... .. ... . . . .. ........ . . . .... . . .. ..................... . .... . .. . . . .............................. .. . . ..... .. . . . ..... ... ..... ..... .......... .. . . . ..... . .. .. . ................................... . ...... . . .... .. . ... ........... ................ . . .. . . ... . ... ....... .. ............ . . . . . ... .......... . . .. . .... . .. .. . . .
lowQualScore : 0 000 333 555 2222 0 0 00 5 0 88 0 555555555555555555555 0 222 000 0 6666666666666666666666 77777 7 4444 000000000 0 0000 00000 000 00 0 0 0 0 0 5555 0 88 55 2 555 2 0 0 0 555 0 8 88888 8 88 66666666666666666666666666666666666666 0 3333333333 0 7 000 0 0000 6666666666666666666666 0 000 00 88 88 88 0 2 88 88 8888 555555555555555555 8 88 0 2 00000000 8 000 88 000 0 0 0 44 55555555 2 2 2 0000 2 2 55 000000000000000000000 0 2222 2 88 2 0 2 666666666666666666666666666666 88 6 7 33333 99 7 7 9 55555 777 77777 77777 0000000000 88 2 0 0 22222 2 88 88 0 55555555555555555555555555555555555 8 000000 5 2 2222 22 5 000 55555555555 2222222222222222 7 0 33 0 3 777 3 000 7777777 33 333333333333 7 3 3 3 7 555 5555555555 5 0 00 5 5555 0 55 55 0 0 0
consensus : TTCCGATTTTCG--TCCATGATCTATTTTTA---GCATA----CTTAATTATA-CATGGTCAAGNTT--TAGACCATTGATCGTGTT-CA---T---------AA------TGAAATTGTTTCCA-CT-T-TTTCA-AT-TT-TA-AC-C-CGC--A-TTCA--TAACA-----TTG-TACT--AAATCC------C--CCGGACC---CTTATA---G-AAA---AAACCCGCTA-GC-GGCCAT-ATGAAGGGCACTA---GGTCC-TT--TCCANTCTACAA--ACGTATTCA-AGCGA-TC-G-TGGAAA-CTTACCATCTGAGAG----TCCTTCATC-TTTATGAATCA--ACTT-------TA---T-T----------------TTTT-GCAA---CTCTTT-TATATACCCAGTTTT--ACAC-GT----AGCCTTAA-T--GGC--A-TAT-GT-----TTAACACC-TG--ACA--TTANTTGCCAT--CTGAAA-TCT--TACGTA-ANAACCTCAGCC----------------ACGTT--ANTAATCTGACAAGT-ATTG---ATA-CTAC---AC-AT-A-GCTTTAAAGC-TGAA--AAGTTGTATAACCGTATTTTTGTCGTAAGGAATTGAATTGTTTAAGCATTT---AAC-AC-GACCCG---TATAT-C----CTGCTA--CACCACG-ATA--------T-TAANTNTTTA-ATTC--TCGTTTTGCGATANTC-CTATTTAT-----GCCTTT--CCCAGGGATT-TTTATTGGAATTTA--NG-CG---TCTCT-----TT-----CCCG------A---TTG--TTTTGTTCTGG-ACA-TGCGCTG---GGGTTTCAT--ATC--AAT-GAGAATGGGTTCA--TG-A----------GGCATA--GGCTGGCCCTCC-----NTTTTCATTCGCTTC----ACATCCGA-T-CG-----------GCTCG----------------TTTTANTTCTTGGGCAA--CGGGACT-CACCAG-TTCTATCTTAGA--CTCAAC-TTN--CTCACCTT--TTC------------CCTTCTGAGCTACAA-TCCAGTAA-CGAGGGNGNGGTAAACCTTACATTCCAATTGNCCGTGNNCTCTNGGGTGGTCCCCCGCACAATTCCCTCGACCGTGGGGACTTTAGTATTCTAAATTCACGNTCTGT
Reference ( gi|1 ) : TTCCG-TTTTCG-GTCCATGATCTATTTTTA---GCATA----CTTAATTATA-CACAGACAAGATT--TAGACCATTGATCGTGTT-TA---T---------AA------TGAAATTGTTTCCA-CT-T-TTTGA-AT-TT-TA-AC-C-TGC--A-TTCA--TAACA-----TTG-TAAT--AAATCC------C--CGGGACC---CTTATA---A-AAA---AAACCCGCTA-GC-GGTCAT-ATGAAGGACACCA---AGTCC-TT--TCCAATCTATAA--ACGTATTCA-AGTGA-TC-A-TGGAAA-CTTACCATCTGAGAG----TCCTTCGTC-TTTATGAATC---TCTT-------TA---T-T----------------TTTT-GCAA---CTCTCA-TATATACCCAGTTTT--ACAC-GT----AGCCTTAA----GGC--A-TAT-GT-----TTAACACC-T---ACA--TTAGTTGCCAT--CTGAAA-TCT--TATGTA-ACAACCTCAGC-----------------ATGTT--AATAATCTGACAAGTTATTG---ATA-TTAC---AC-AT-A-GCTTTAAAGC-TGAA--AAGTTGTATAACCATATTTTTATCGTAAGGAATTGAATTGTTTTAGCATTTTGTAAC-ATCAACCCG---TATAT-C----CTGCTA--CACCACG-ATATTTTTTTTTTTAATTTTTTA-ATTCCTTTGTTTTGTAATAGTC-CTATTTAT-----GTCTTT--CCCAGGGATT-TTTATTGAAATTTA--GG-CG---TCTCT-----TT-----TCCG------A---TTG--TTTTGTTTTGG-ACA-TGCGCTG---GGGTTTCAT--ATC--AAT-GAGAATGGGTTCA--TG-A----------GGCATA--GGATGGCCCTCC-----TTTTTCATTCGCTTC----ACATCCGA-T-CG-----------GCTCG----------------TTTTATTTGTTGGGCAA--TGGGATT-CACCAG-TACTATCTTAGG--CTCAAC-TTG--TTCACCTT--TTC------------CCTTCTGCGCTACAA-TCCAGTAA-CGAGGGGGAGGT---CCT----TTCCAATTGGCC-TGAGCTCTGAAGTGGTCTTT----CAATT-CCTCGACCGTGGGGACTTTAG-ATTCTAAATTTATATTCTGT
gi|9 : TTCCGATTCTTG---CCATAATCTATTTTTA---GCATA----CTTAATCATA-CATGGTCAAAATT--TAGACCATTGATCGTGTT-CA---TAATAAGGGGAA------TGAAATTGTTTCCA-CT-T-ATTGG-AT-TT-------------------A--TAACA-----TTG-TA
gi|2 : ggcccgacccacccttctcgttttgtttttgttttgttatgactcgttactccggtcgatcatgcccatacagctcggagcacattcgtgtcctgatacagtcatCG-TTTGC---TTCAT-ATCTCTTTTTA---GCATA----TTCAATTACA-CACGGACAAGATT--TATACCATTGATCGTGTT-CAAAAT---------AAGGGGAATGACATTGTTTCCA-CT-T-TTCCA-AT-TT-TA-AC-C-CGC--A-TTCA--TAACA-----TTG-CACT--AAATCC------C--CCGGACC---ATTATAGAAA-AAA---AAACTCGCTA-GC-GGCCAA-ATGAAGGGCACTA---GGTCC-TT--TCCAGTCTACAT--ACGTATTCA-AGCGA-TC-A-TGGAAA-CTTACCATCTGAGAG-----CCTTCATC----ATGAATC---ACTT-------TA---T-TATTATTATTTTTTTTTTTTT-GCAA---ATGTTT-TATATATCCAGTTT---ACAC-AT----AGCCTTAATTTAGGC--A-T---GT-----TTAACACC-T---ACA--TTAGTTGCCAT--CTGAAA-TAT--TATGTA-ACAGCTTCTAC-----------------ACGTT--ACTAATCTGA---ATTATTG---ATA-CTAC---AC-AT-A-GCTCTAAAGA-TGAA--AAGTTGTATAACCGTATATTTGTTGTAAGGAATTGAATTGTTTAAGCATTTTATAAC-ACAAACCCG---TATAT-C----CTGCTA--CACCATG-ACA--------TTTAAAA----A-A-------AATTTGCAATACTC-CTATTTAT-----GTCTTT--CCCACGGATT-TTTATTGGGATTTA--GG-TG---TCTCT-----TT-----t
gi|8 : gtgcttttttctgttatgactcagctactccttctatcatgcccatacagctcggaaccacttttcgtgttccatcagtcgctTTTCGTGTCC-CGATACATTTTTA---GCATA----CTTAATTATA-CATGGTCAAGCTT--TAGACCATTGATCGTGTTCTA-------------AA------TGAAATTGTTTCCA-CT-A-TTTTA-AT-TT-TA-AC-C-CGC--A-TTCT--TAACA-----TTG-TACT--AAATCC------C--CCGGACC---CTTATN---N-NNN---NNNNNNNNNN-NN-NNNNNN-NNGGGGGAc
gi|7 : tgttgctttgttatgactcactactccggccgatcatgcccatacacctcggagcacTTTTATGGGCATAAACGTTTAAT-ATAGCATGGTCAAGCTTGCTAGCCAATTGATCGTCTC-TA---C---------A-------TGAAATTGTGTCCA-CTAT-TTTCATAT-GTGTA-ACGC-CGC--AATTC---TAAAT-----TTA-TCTC--AAATCC------CGCCCGGACC----TTATA---G-AAA---AAG-CCGCTACGC-GGCCAT-ATGAGGCACTTCA---GGTCCTTT--TCCACACGATAATTTCG-ATTCATAGCAAGTC-AGTGGCAA-CTT-CCATCTGAGAA----TCCTTCGTCGTTTATGAATCATACCTT-------TA---TCT----------------TTTT-GC
gi|5 : tttcgtgtttcgccaaacaTTCCAACT-TATTTCA-ATATT-TACAC-CCTGCTAA-TTCAATTAGCACCATCTTGGTACTTTAAATCCATTTCCC--CCGGACTTCACTTATA---GTAAACATAAACCCGCTA-GCCGGCTATTATGAAAAGCACTATAGGGTCC-TTCTTCCAATCTACAA---CGTATTCA-AGCGA-TTTG-TGGAAAACTCACCATCTGAGGGAAAATCCTTCATC-TTTATGAATC---AGCT-------TACCTT-T----------------TTTT-GCAAAGTCTCTTATTATTTA-CCAGTTTG--ACACTATG---AGCCTGAA----GGC--A-AATCGT-----TTAACACC-T---ACA--tagacgtctctt
gi|11 : agctttcttatagctcatacagctcggagcactttcgtgtgccttgattacagatttgttttcggatatttctgttccataattcatattttattagctattatgatctcctcgagtttatcactgacggactatagtatcctgtcagatacaatattccgcatcgtgttcataatacacgccgggatattttattaaatttgtgtctctccaACA-----TTG-TACT--AAATCC------C--CGGGACC---CTTATA---G-AAA---AA-CCCACTA-GC-GGCCAT-ATGAAGGGCACTA---GGTCC-TT--TCCATCCTACAA--AGGTATTCA-AGCGA-TC-G-TGGAAG-CTTACCATCTGAGGG----TCCTTCATC-TTTATGAATCAATTCTTAAACTCCTA---T-T----------------TTT
gi|4 : A-CTTACCATCTGAGAG----TCCTTCATC-TCTATGAATT---ACTT-------TA---T-T----------------TTTTTGCAA---CTCTCT-TATATACC-AGTTTTTTACTC-GT----AGCCTTAA----AGC--A-TAT-GT-----TTAACACCAT---ACA--TTATTT-CAAT--CTGAAA-TCT--TACGTACAAAACCTCAACT----------------ATGTT--ACTAATCTGACAAGT-ATTG---ATAACTAC---AC-ATTA-GCTTTAAAGC-TGCA--AACGTGTA-AACAATATTTT-GTCGTAAGAAATTGAATTGTTTAAGCAT------------AACCCG---TATATTC----CTGCTA--CACCACG-ATAATTATTTTT--AATTCTTT--------TTGTTTT-TGGCAATCTCAATTTAT-----GTCTTT--CCCAGGGATT-TTTATTCGAATATA--TG-CG---TCTCT-----TT-----CCCG------A---TTG--TTTTGTTTTGG-ACA-TGCGCTG---GGGTTTCAT--ATA--AAT-GAGAATGGGTTCA--TG-A----------GGCATA--GGCTGGCCCTCC-----TTTTTCATTCGCTTC----ACATCCGATT-CG-----------GCTCG----------------TTTTAGTTCTTGGGCAG--TGGGACT-CACCAG-TTCTATCTTAGA--CTCAAC-TTT--CTCACCTT--TTC------------CCTTCTGAGCTACAA-TCCAGTAA-C-AGGa
gi|4 : TTT--ACAC-GTTTGCAGCTTTAA----AGCTAA-TGT-GTAGTTATCAATACT-TGTCAGA--TTAG-TAACATAGTTGAGG-TTTTGTACGTA-A-GATTTCAG--------------------ATTGAAATAATGTA---------TG---GTG-TTAA---AC-AT-ATGCTTTAAGGC-T
gi|3 : acttaccatctgagagtccttcatctctatgaattactttatttttttgcaactctcttatataccagttttttactcgtT----ACCCTTAAAT--GGC--AACAA-GA-----GTAGCACC-TGA-ACAGATTGCTTGTCAT--CTAAAAACCT--TAC--A-AGCACCTAAGCCTGTCTGACTCACCTTGATGCT--AAT--TCT-ACAAGAAACTGCAAATAGTTACTGTACTAA-A-GCTT-AAATCATGAATGGAATTGTATAACTATTTTTTTA----AAAAGAC--AAT-ATTTC--CATT----AACTATCGAGCCGACTTATAT-CACCGTTGCCAACCCCCAAA-AAAT----------AAATGTTTATATTTCTTCTTGTTACAATACTC-ATATTTAT-----CCCTCT--TCCATGTTTTATTTATCGGAATTTA--GGGCG---TGTTTCGGTATT-----TCCGTAAGCCG---TTT--TTTTGTTCTGATACAATGCGTT-------TTACTT--ATC--AATTGAGAATGGATT-A--TGAA----------GGCAGA--GGCTGCCCCTCCCAATTTTTTTCA-TCTCTTCGACGACATTC-A-T-CATAGCTGTTACTGCTCGCTAGTTCGACAACGTATCTCATTCTTTGAGCAAACCGGAACTACACCAGTTCCTATC--AGACTCTCAACGTTAATTTCACCTTAATCCCATGTAAACCCACCCCTTTCACT-TAATTCCAGTAATCGAAAATATAGTAAACTTTACATTTCAATTGCTCGTGTCTTCTTGAATGGTCTCTCGCACAATTCCCTCGACCAT--GGAC--TAGTATTCTAAATTCACAGTTTGTcaatattttgtcgtaagaaattgaattgtttaagcataacccgtatattcctgctacaccacgataattatttttaattctttttgtttttggcaatctcaatttatgtctttcccagggatttttattcgaatatatgcgtctctttcccgattgttttgttttggacatgcgctggggtttcatataaatgagaatgggttcatgaggcataggctggccctcctttttcattcgcttcacatccgattcggctcgttttagttcttgggcagtgggactcaccagttctatcttagactcaactttctcaccttttcccttctgagctacaatccagtaacagg
gi|12 : TG---ATA-GTGC---AC-AT-A-ACT----------------GTTGTATAACCGTATTTTTGTCGTAAGGAATTGAACTGTGTAAGCCTTT-------------------TATAT-C----CTGCAA--CAACACGAATA----------TAATTTTTTG-ATTCta
gi|15 : TTTGCAATATTC-CTATTTAT-----GTCTTT--CCCAGGGATT-TTTATTGGAATgatttacgata
gi|10 : ATAG---CTATTTACAAATGGCCTTTTACCCAGGA--T-TTTATGGAATGTTATCGT-CGAACTTTCT-----TTCTATCTCAG------AAATTTGATTTTTGTTCTGG-ACA-TGCGC-GAGCGAGTTTCATCAATCTAGAT-GACACTTGG-CCACTTG-ACCAAAATGTTGGCATGTCAGATA------C-----ATATTCA---ACCCC----ACA--CGA-T-CG-----------GCTCG----------------TTTTA
gi|6 : AATC-CTATTTAT-----GCCTTT--CCCAGGGATT-TTTATTGGAATTTA--TG-CG---TCTCT-----TT-----CCCG------A---TTG--TTTTGTTCTGG-ACA-TGCGCTG---GGGTTTCAT--ATC--AAT-GAGAA-----------------------------------TGGCCCTCC-----ATTTTCATTCGTTTC----ACACCCGA-TTCG-----------GCTCG----------------TTTTAATTCTTGGGCAA--TGGGATT-CACCAG-TTCTATCTTAGG--CTCAAC-TGC--CTCACCTT--TTC------------TCTTCTGAGCTACAA-TCCAGTAA-CGAGGGGGAGGT---CCT----TTCCAATTGGCC-TGGGCTCTGAGGTGGTCCTC----CAATT-CCTCGACCGTGGGGACTTTAG-ATTCTAAATTCATGTTCT
gi|13 : AATC-CTATTTAT-----GCCTTT--CCCAGGGATT-TTTATTGGAATTTA--TG-CG---TCTCT-----TT-----CCC
2 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|14 ): TTTCATGAATTGAGATTACACTTGACCACTTGATTGAGAATTTTGGTGTTAGAT
Unaligned ( gi|16 ): CTGTCCCGAATCTACCTTTTTTTGCAAACACTTTTTATAC
Alignments
lowQualScore : 2222 111 1111 11 666666666666666666666 111 11111 11 111111 1111 111 1111 111111 11 111 1 1111 333 5555555555555555555555 111 1 222 1 44444 11111 2 11 1 1 555555555555555 111 1 2222222 3333333333 11 7777777777777777 11 11 6666666666666666666666666666666666666 11111 111 111111 1111 222222222222 1111 11 11111 11 11 1111111 111 111 222222 22222222222222 333333333 111 22222222 111 1 1 11 1 111 1 4444444444 11 1 1 5555555555 2 4444444 2 2
lowQualScore : 7 7777 3 6 444 7777 3 8 1 1 11 000000000000000000000 6 888 1 6 7777 6 6 6 99 6 222 44444 5 5 55 999999 99 4444 8 444 7777 8 8 8 0 666666 8 11 1 777 0 8 8 6 6 4444 6 111 7777777777777777777777 8 777 0 6 2 333 0 8 22222 77777 5 8 11 1 2 0 2 0 1 444444444444444 1 777 2 0 3 8 8 9999999 0 5555555555 0 66 0 8 0 11 2222222222222222 5 8 8 11 11 9 5555555555555555555555555555555555555 6 3 0 1 5 22222 66 0 5 5 1 000 666666 2222 333333333333 4444 11 8 8 44444 11 11 8 9999999 999999 3 444 444 111111 00000000000000 8 222222222 8 8 444 99999999 1 0 555 0 0 3 33 0 444 0 3333333333 33 0 0 2 1 1 8888888888 1 3 22 222 5555555 3 6 7 3 222
lowQualScore : . .... . . ... .... . . . . .. ..................... . ... . . .... . . . .. . ... ..... . . .. ...... .. .... . ... .... . . . . ...... . .. . ... . . . . . .... . ... ...................... . ... . . . ... . . ..... ..... . . .. . . . . . . ............... . ... . . . . . ....... . .......... . .. . . . .. ................ . . . .. .. . ..................................... . . . . . ..... .. . . . . ... ...... .... ............ .... .. . . ..... .. .. . ....... ...... . ... ... ...... .............. . ......... . . ... ........ . . ... . . . .. . ... . .......... .. . . . . . .......... . . .. ... ....... . . . . ...
lowQualScore : 3 0000 2 5 000 0000 8 0 4 0 00 000000000000000000000 7 777 0 7 5555 7 7 7 22 7 777 33333 7 7 88 222222 22 2222 0 000 8888 0 0 0 8 000000 0 00 0 000 8 0 0 0 7 2222 7 333 0000000000000000000000 0 555 0 5 5 000 0 0 44444 00000 0 0 00 0 5 0 5 0 0 000000000000000 0 555 5 0 2 0 0 8888888 6 0000000000 8 44 8 0 8 00 6666666666666666 0 0 0 00 00 0 2222222222222222222222222222222222222 7 7 7 0 0 55555 99 4 0 0 0 000 444444 1111 555555555555 8888 00 0 0 88888 00 00 0 4444444 666666 2 000 000 000000 00000000000000 0 888888888 0 0 000 00000000 0 2 888 0 0 2 88 0 888 0 8888888888 88 0 0 5 0 0 3333333333 0 3 00 333 7777777 3 7 3 7 333
consensus : TTCCGATTTTCG-T--CCATGATCTATTTTTA---GCATA----CTTAATTATA-CACGGTCAAGATT--TAGACCATTGATCGTGTTCA---T---------AA------TGAAATTGTTTCCA-CT-T-TTTCA-AT-TT-TA-AC-CC-GC--A-TTCA--TAACA-----TTG-TA-CT--AAATCC------C--CCGGACC---CTTATAG-AAA---AAA---CCCGCTA-GC-GGCCAT-ATGAAGGGCACT--A---GGTCC-TT--TCCANTCTACAA--ACGTATTCA-AGCGA-TC-GTGGAAA-CTTACCATCTGAGAG----TCCTTCGTC-TTTATGAATCA-A-CTTTA---T-T----------------TTTT-GCAA---CTCTC-TTATATACCCAGTTTT--ACAC-GT-AGCCTTAA-T---GGCA-TAT-GTTTAACACCT-A-CA--TTANTTGCCATCTGAAA-TCTTACGTA-ANAACCTC-AGCC----------ACGTTANT---AATCTGACAAGT-ATTGATA-CTACACAT-AGCT------CTAAAGCTGAAA----------AGTTGTATAACCGTATTTTTGTCGTAAGG-AATTGAATTGT--TTAAGCATT---T---AACA-C-AACCCGTATAT-C-CTGCTAC--ACCAC--GATA-T-TT--------AANTTTTTA-ATT-C--TT---GTT-TTGCGATANTC-CTATTTAT-----GCCTTT--CCCAGGGATT-TTTATTGGAAT-TTATG---CGTC------TC----TTTC-----C------CGA---TTG--TTTTGTTCTGG-ACA-TGCGCTG---GGGTTTCAT--ATC--AAT-GAGAATGGGTTCA--TGA-GGCANAGGCTGGC---CC---TCCN-----TTTTCAT----TCG----C-TTCA-CAT--------CCGA-T-CG---GCTCG--------TTTTANTTCTTGGGCAA--TGGGACT-CACCAGTTC-TATCTTAGGCTC--AAC-TTN--CTCACCTTT-TCCCTTCTGAGCT----------AC--AAT-CCAGTAA-CGAGGGGGAGGT---CCT----TTCCAATTGGCC-TGNGCTCTGAAGTGGTCTTT----CAATT-CCTCGACCGTGGGGACTTTAG-ATTCTAAATTCATATTCTGT
Reference ( family-1082 ) : TTCCGATTTTCG-T--CCATGATCTATTTTTA---GCATA----CTTAATTATA-CATGGTCAAGNTT--TAGACCATTGATCGTGTTCA---T---------AA------TGAAATTGTTTCCA-CT-T-TTTCA-AT-TT-TA-AC-CC-GC--A-TTCA--TAACA-----TTG-TA-CT--AAATCC------C--CCGGACC---CTTATAG-AAA---AAA---CCCGCTA-GC-GGCCAT-ATGAAGGGCACT--A---GGTCC-TT--TCCANTCTACAA--ACGTATTCA-AGCGA-TC-GTGGAAA-CTTACCATCTGAGAG----TCCTTCATC-TTTATGAATCA-A-CTTTA---T-T----------------TTTT-GCAA---CTCTT-TTATATACCCAGTTTT--ACAC-GT-AGCCTTAA-T---GGCA-TAT-GTTTAACACCTGA-CA--TTANTTGCCATCTGAAA-TCTTACGTA-ANAACCTC-AGCC----------ACGTTANT---AATCTGACAAGT-ATTGATA-CTACACAT-AGCT------TTAAAGCTGAAA----------AGTTGTATAACCGTATTTTTGTCGTAAGG-AATTGAATTGT--TTAAGCATT---T---AACA-C-GACCCGTATAT-C-CTGCTAC--ACCAC--GATA-T-T---------AANTNTTTA-ATT-C--TC---GTT-TTGCGATANTC-CTATTTAT-----GCCTTT--CCCAGGGATT-TTTATTGGAAT-TTANG---CGTC------TC----TTTC-----C------CGA---TTG--TTTTGTTCTGG-ACA-TGCGCTG---GGGTTTCAT--ATC--AAT-GAGAATGGGTTCA--TGA-GGCATAGGCTGGC---CC---TCCN-----TTTTCAT----TCG----C-TTCA-CAT--------CCGA-T-CG---GCTCG--------TTTTANTTCTTGGGCAA--CGGGACT-CACCAGTTC-TATCTTAGACTC--AAC-TTN--CTCACCTTT-TCCCTTCTGAGCT----------AC--AAT-CCAGTAA-CGAGGGNGNGGTAAACCTTACATTCCAATTGNCCGTGNNCTCTNGGGTGGTCCCCCGCACAATTCCCTCGACCGTGGGGACTTTAGTATTCTAAATTCACGNTCTGT
gi|1 : TTCCG-TTTTCGGT--CCATGATCTATTTTTA---GCATA----CTTAATTATA-CACAGACAAGATT--TAGACCATTGATCGTGTTTA---T---------AA------TGAAATTGTTTCCA-CT-T-TTTGA-AT-TT-TA-AC-CT-GC--A-TTCA--TAACA-----TTG-TA-AT--AAATCC------C--CGGGACC---CTTATAA-AAA---AAA---CCCGCTA-GC-GGTCAT-ATGAAGGACACC--A---AGTCC-TT--TCCAATCTATAA--ACGTATTCA-AGTGA-TC-ATGGAAA-CTTACCATCTGAGAG----TCCTTCGTC-TTTATGAATCT---CTTTA---T-T----------------TTTT-GCAA---CTCTC-ATATATACCCAGTTTT--ACAC-GT-AGCCTTAA-----GGCA-TAT-GTTTAACACCT-A-CA--TTAGTTGCCATCTGAAA-TCTTATGTA-ACAACCTC-AGC-----------ATGTTAAT---AATCTGACAAGTTATTGATA-TTACACAT-AGCT------TTAAAGCTGAAA----------AGTTGTATAACCATATTTTTATCGTAAGG-AATTGAATTGT--TTTAGCATT---TTGTAACATC-AACCCGTATAT-C-CTGCTAC--ACCAC--GATA-T-TTTTTTTTTTAATTTTTTA-ATT-CCTTT---GTT-TTGTAATAGTC-CTATTTAT-----GTCTTT--CCCAGGGATT-TTTATTGAAAT-TTAGG---CGTC------TC----TTTT-----C------CGA---TTG--TTTTGTTTTGG-ACA-TGCGCTG---GGGTTTCAT--ATC--AAT-GAGAATGGGTTCA--TGA-GGCATAGGATGGC---CC---TCCT-----TTTTCAT----TCG----C-TTCA-CAT--------CCGA-T-CG---GCTCG--------TTTTATTTGTTGGGCAA--TGGGATT-CACCAGTAC-TATCTTAGGCTC--AAC-TTG--TTCACCTTT-TCCCTTCTGCGCT----------AC--AAT-CCAGTAA-CGAGGGGGAGGT---CCT----TTCCAATTGGCC-TGAGCTCTGAAGTGGTCTTT----CAATT-CCTCGACCGTGGGGACTTTAG-ATTCTAAATTTATATTCTGT
gi|10 : -CTATTTACAAATGGCCTTTTACCCAGGA--T-TTTAT-GGAATGTTAT----CGTCGAACTTTC----TTTCTATCTC------AGAAATTTGATTTTTGTTCTGG-ACA-TGCGC-GAGCGAGTTTCATCAATCTAGAT-GACACTTGG-CCACTTGA-CCAAAATGTTGGCATGTCAGATACA-----TATTCA-------A----C-CCCA-CA----------CGA-T-CG---GCTCG--------TTTTA
gi|11 : atagACA-----TTG-TA-CT--AAATCC------C--CGGGACC---CTTATAG-AAA---AA----CCCACTA-GC-GGCCAT-ATGAAGGGCACT--A---GGTCC-TT--TCCATCCTACAA--AGGTATTCA-AGCGA-TC-GTGGAAG-CTTACCATCTGAGGG----TCCTTCATC-TTTATGAATCA-A-TTCT
gi|12 : TGATA-GTGCACAT-AACT-----------------------------GTTGTATAACCGTATTTTTGTCGTAAGG-AATTGAACTGT--GTAAGCCTT---T----------------TATAT-C-CTGCAAC--AACAC--GA-A-TAT---------AATTTTTTG-AT-----TC---GAT-TTACGATAtaaactcctattttta
gi|13 : AATC-CTATTTAT-----GCCTTT--CCCAGGGATT-TTTATTGGAAT-TTATG---CGTC------TC----TTTC-----C------C
gi|15 : T-TTGCAATATTC-CTATTTAT-----GTCTTT--CCCAGGGATT-TTTATTGGAAT-
gi|2 : -T--TCAT-ATCTCTTTTTA---GCATA----TTCAATTACA-CACGGACAAGATT--TATACCATTGATCGTGTTCAAAAT---------AAGGGGAATGACATTGTTTCCA-CT-T-TTCCA-AT-TT-TA-AC-CC-GC--A-TTCA--TAACA-----TTG-CA-CT--AAATCC------C--CCGGACC---ATTATAG-AAA---AAAAAACTCGCTA-GC-GGCCAA-ATGAAGGGCACT--A---GGTCC-TT--TCCAGTCTACAT--ACGTATTCA-AGCGA-TC-ATGGAAA-CTTACCATCTGAGAG-----CCTTCATC----ATGAATCA---CTTTA---T-TATTATTATTTTTTTTTTTTT-GCAA---ATGTT-TTATATATCCAGTTT---ACAC-AT-AGCCTTAA-TTTAGGCA-T---GTTTAACACCT-A-CA--TTAGTTGCCATCTGAAA-TATTATGTA-ACAGCTTCTA--C----------ACGTTACT---AATCTGA--ATT-ATTGATA-CTACACAT-AGCT------CTAAAGATGAAA----------AGTTGTATAACCGTATATTTGTTGTAAGG-AATTGAATTGT--TTAAGCATTTTAT---AACA-CAAACCCGTATAT-C-CTGCTAC--ACCAT--GACA-T-TTA-------AAAAA---A-A-------------T-TTGCAATACTC-CTATTTAT-----GTCTTT--CCCACGGATT-TTTATTGGGAT-TTAGG---TGTC------TC----TTTC-----
gi|3 : gtgcttttttctgttatgactcagctactccttctatcatgcccatacagctcggaaccacttttcgtgttccatcagtcgctcgtttgcT-ACCCTTAAAT---GGCAACAA-GAGTAGCACCTGAACAGATTGCTTGTCATCTAAAAACCTTAC--A-AGCACCTA-AGCCTGTCTGACTCACCTTGATGCTAATTCTACAAGA-A-----A-CTGCAAAT-AGTTACTGTACTAAAGCTTAAATCATGAATGGAATTGTATAAC--TATTTTTTTAAAAAGACAAT---ATTTCCATTAACTATC---G---AGC--C-GACT--TATAT-CACCGTTGCCAACCCCCAAAAA-A-T---------AAATGTTTATATTTC--TT---CTTGTTACAATACTC-ATATTTAT-----CCCTCT--TCCATGTTTTATTTATCGGAAT-TTAGGGCGTGTT------TCGGTATTTC-----CGTAAGCCG----TTT--TTTTGTTCTGATACAATGCGTT-------TTACTT--ATC--AATTGAGAATGGATT-A--TGAAGGCAGAGGCTGCC---CC---TCCCAATTTTTTTCATCTCTTCGACGACATTCATCATAGCTGTTACTGC-T-CGCTAGTTCGACAACGTATCTCATTCTTTGAGCAAACCGGAACTACACCAGTTCCTATC--AGACTCTCAACGTTAATTTCACCTTAATCCCATGTAAACCCACCCCTTTCACTTAATTCCAGTAATCGAAAATATAGTAAACTTTACATTTCAATTGCTCGTGTCTTCTTGAATGGTCTCTCGCACAATTCCCTCGACCAT--GGAC--TAGTATTCTAAATTCACAGTTTGT
gi|4 : A-CTTACCATCTGAGAG----TCCTTCATC-TCTATGAATTA---CTTTA---T-T----------------TTTTTGCAA---CTCTC-TTATATACC-AGTTTTTTACTC-GT-AGCCTTAA-----AGCA-TAT-GTTTAACACCATA-CA--TTATTT-CAATCTGAAA-TCTTACGTACAAAACCTC-AACT----------ATGTTACT---AATCTGACAAGT-ATTGATAACTACACATTAGCT------TTAAAGCTGCAA----------ACGTGTA-AACAATATTTT-GTCGTAAGA-AATTGAATTGT--TTAAGCAT---------------AACCCGTATATTC-CTGCTAC--ACCAC--GATAAT-T---------A--TTTTTA-ATT-C--TTTTTGTT-TT-TGGCAATCTCAATTTAT-----GTCTTT--CCCAGGGATT-TTTATTCGAAT-ATATG---CGTC------TC----TTTC-----C------CGA---TTG--TTTTGTTTTGG-ACA-TGCGCTG---GGGTTTCAT--ATA--AAT-GAGAATGGGTTCA--TGA-GGCATAGGCTGGC---CC---TCCT-----TTTTCAT----TCG----C-TTCA-CAT--------CCGATT-CG---GCTCG--------TTTTAGTTCTTGGGCAG--TGGGACT-CACCAGTTC-TATCTTAGACTC--AAC-TTT--CTCACCTTT-TCCCTTCTGAGCT----------AC--AAT-CCAGTAA-C-AGGta
gi|5 : TTCCAACT-TATTTCA-ATATT-TACAC-CCTGCTAA-TTCAATTAGCACCATCTTGGTA-CTTTAAATCCATTTCCC--CCGGACTTCACTTATAGTAAACATAAA---CCCGCTA-GCCGGCTATTATGAAAAGCACT--ATAGGGTCC-TTCTTCCAATCTACAA---CGTATTCA-AGCGA-TTTGTGGAAAACTCACCATCTGAGGGAAAATCCTTCATC-TTTATGAATCA-G-C-TTACCTT-T----------------TTTT-GCAAAGTCTCTTATTATTTA-CCAGTTTG--ACACTATGAGCCTGAA-----GGCA-AATCGTTTAACACCT-A-CA--
gi|6 : agctttcttatagctcatacagctcggagcactttcgtgtgccttgattacagatttgttttcggatatttctgttccataattcatattttattagctattatgatctcctcgagtttatcactgacggactatagtatcctgtcagatacaatattccgcatcgtgttcataatacacgccgggatattttattaaatttgtgtctctccaAATC-CTATTTAT-----GCCTTT--CCCAGGGATT-TTTATTGGAAT-TTATG---CGTC------TC----TTTC-----C------CGA---TTG--TTTTGTTCTGG-ACA-TGCGCTG---GGGTTTCAT--ATC--AAT-GAGAATGG-----------------------C---CC---TCCA-----TTTTCAT----TCG----T-TTCA-CAC--------CCGA-TTCG---GCTCG--------TTTTAATTCTTGGGCAA--TGGGATT-CACCAGTTC-TATCTTAGGCTC--AAC-TGC--CTCACCTTT-TCTCTTCTGAGCT----------AC--AAT-CCAGTAA-CGAGGGGGAGGT---CCT----TTCCAATTGGCC-TGGGCTCTGAGGTGGTCCTC----CAATT-CCTCGACCGTGGGGACTTTAG-ATTCTAAATTCATGTTCT
gi|7 : TTTTATGGGCATAAACGTTTAAT-ATAGCATGGTCAAGCTTGCTAGCCAATTGATCGTCTCTA---C---------A-------TGAAATTGTGTCCA-CTAT-TTTCATAT-GTGTA-ACGCC-GC--AATTC---TAA-A-----TT--TATCTC-AAATCC------CGCCCGGACC----TTATAG-AAA---AAG----CCGCTACGC-GGCCAT-ATGA--GGCACTTCA---GGTCCTTT--TCCACACGATAATTTCG-ATTCATAGCAAGTCAGTGGCAA-CTT-CCATCTGAGAA----TCCTTCGTCGTTTATGAATCATACCTTTA---TCT----------------TTTT-GC
gi|8 : tttcgtgtttcgccaaacaACTTTCG-TGTCC-CGATACATTTTTA---GCATA----CTTAATTATA-CATGGTCAAGCTT--TAGACCATTGATCGTGTTCT---A---------AA------TGAAATTGTTTCCA-CT-A-TTTTA-AT-TT-TA-AC-CC-GC--A-TTCT--TAACA-----TTG-TA-CT--AAATCC------C--CCGGACC---CTTATtagacgtctctt
gi|9 : tgttgctttgttatgactcactactccggccgatcatgcccatacacctcggagcTTCCGATTCTTG----CCATAATCTATTTTTA---GCATA----CTTAATCATA-CATGGTCAAAATT--TAGACCATTGATCGTGTTCA---TAATAAGGGGAA------TGAAATTGTTTCCA-CT-T-------AT-T-----------GG--A-TTTA--TAACA-----TTG-TA-nnnnnnnnnnnnnnnnnnnnnnnnnggggga
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|14 ): TTTCATGAATTGAGATTACACTTGACCACTTGATTGAGAATTTTGGTGTTAGAT
Unaligned ( gi|16 ): CTGTCCCGAATCTACCTTTTTTTGCAAACACTTTTTATAC
Alignments
lowQualScore : 2222 111 1111 11 666666666666666666666 111 11111 11 111111 1111 111 1111 111111 11 111 1 1111 333 5555555555555555555555 11 111 222 1 44444 11111 11 11 1 1 555555555555555 111 1 2222222 3333333333 11 666666666666666 1111 333333333333333333333333333333 11111 111 111111 1111 222222222222 1111 11 11111 11 11 1111111 111 111 222222 1 1111 33333333333 5555555555555555 11 1 1 11 1 111 1 1 44444444444 1 1 222 2222 1 2222 1 1
lowQualScore : 7 7777 3 6 444 7777 3 8 1 0 11 000000000000000000000 6 888 1 6 7777 6 6 6 99 6 222 44444 5 5 55 999999 99 4444 8 444 7777 8 8 8 0 666666 8 11 1 777 0 8 8 6 6 4444 0 6 111 7777777777777777777777 8 99 8 3 777 2 333 0 8 22222 77777 8 11 11 1 2 0 2 0 1 444444444444444 1 777 2 0 3 8 8 9999999 0 5555555555 0 66 0 8 0 11 888888888888888 5 8 7777 9 22 777777777777777777777777777777 1 6 3 0 1 5 22222 66 0 5 5 000 666666 2222 333333333333 4444 11 8 8 44444 11 11 8 9999999 8 3 3 444 444 111111 0 7777 3 8 8 88888888888 3333333333333333 1 0 33 0 0 3 33 0 444 0 0 77777777777 0 0 2 333 8888 3 1 8888 3 6 7 3
lowQualScore : . .... . . ... .... . . . . .. ..................... . ... . . .... . . . .. . ... ..... . . .. ...... .. .... . ... .... . . . . ...... . .. . ... . . . . . .... . . ... ...................... . .. . . ... . ... . . ..... ..... . .. .. . . . . . . ............... . ... . . . . . ....... . .......... . .. . . . .. ............... . . .... . .. .............................. . . . . . . ..... .. . . . ... ...... .... ............ .... .. . . ..... .. .. . ....... . . . ... ... ...... . .... . . . ........... ................ . . .. . . . .. . ... . . ........... . . . ... .... . . .... . . . .
lowQualScore : 3 0000 2 5 000 0000 8 0 4 6 00 000000000000000000000 7 777 0 7 5555 7 7 7 22 7 777 33333 7 7 88 222222 22 2222 0 000 8888 0 0 0 8 000000 0 00 0 000 8 0 0 0 7 2222 7 7 333 0000000000000000000000 0 00 0 2 555 5 000 0 0 44444 00000 0 00 00 0 5 0 5 0 0 000000000000000 0 555 5 0 2 0 0 4444444 6 0000000000 8 44 8 0 8 00 000000000000000 0 0 0000 0 88 666666666666666666666666666666 4 7 7 7 0 0 55555 99 4 0 0 000 444444 1111 555555555555 8888 00 0 0 88888 00 00 0 4444444 0 8 2 000 000 000000 6 0000 8 0 0 00000000000 0000000000000000 0 2 88 0 0 2 88 0 888 0 0 55555555555 0 0 5 333 3333 3 0 3333 3 7 3 3
consensus : TTCCGATTTTCG-T--CCATGATCTATTTTTA---GCATA----CTTAATTATA-CACGGTCAAGATT--TAGACCATTGATCGTGTTCA---T---------AA------TGAAATTGTTTCCA-CT-T-TTTCA-AT-TT-TA-AC-CC-GC--A-TTCA--TAACA-----TTG-TA-CT--AAATCC------C--CCGGACC---CTTATAG-AAA---AAA---CCCGCTA-GC-GGCCAT-ATGAAGGGCACT--A---GGTCC-TT--TCCANTCTACAA--ACGTATTCA-AGCGA-TC-GTGGAAA-CTTACCATCTGAGAG----TCCTTCGTC-TTTATGAATCA-A-CTTTA---T-T----------------TTTT-GC--AAC-TCTCTTATATAC---CCAGTTTT--ACAC-GT-AGCCTTAA-T---GGCA-TAT-GTTTAACACC-T--ACA--TTANTTGCCATCTGAAA-TCTTACGTA-ANAACCTC-AGCC----------ACGTTANT---AATCTGACAAGT-ATTGATA-CTACACAT-AGCT------CTAAAGCTGAAA----------AGTTGTATAACCGTATTTTTGTCGTAAGG-AATTGAATTGT--TTAAGCATT---T---AACA-C-AACCCGTATAT-C----CTGCTACACCACGATATTT--------AANTTTTTA-ATT-C--TT---GTT-TTGCGATANTC-CTATTTAT-----GCCTTT--CCCAGGGATT-TTTATTGGAAT-TTA---TGCGTC------TC----TTTC-----C------CGA---TTG--TTTTGTTCTGG-ACA-TGCGCTG---GGGTTTCAT--ATC--AAT-GAGAATGGGTTCA--TG-AGGCANAGGCTGGC---CC---TCC-----TTTTTCATTCGCTTC----ACATCCGA-T-CG-----------GCTCG----------------TTTTANTTCTTGGGCAA--TGGGACT-CACCAGTT-CTATCTTAGG--CTCAAC-TT--TCTCACCTT-TTCCCTTCTGAG-CTAC-----------AA-TCCAGTAA-CGAGGGGGAGGT---CCT----TTCCAATTGGCC-TGNGCTCTGAAGTGGTCTTT----CAATT-CCTCGACCGTGGGGACTTTAG-ATTCTAAATTCATATTCTGT
Reference ( family-1082 ) : TTCCGATTTTCG-T--CCATGATCTATTTTTA---GCATA----CTTAATTATA-CACGGTCAAGATT--TAGACCATTGATCGTGTTCA---T---------AA------TGAAATTGTTTCCA-CT-T-TTTCA-AT-TT-TA-AC-CC-GC--A-TTCA--TAACA-----TTG-TA-CT--AAATCC------C--CCGGACC---CTTATAG-AAA---AAA---CCCGCTA-GC-GGCCAT-ATGAAGGGCACT--A---GGTCC-TT--TCCANTCTACAA--ACGTATTCA-AGCGA-TC-GTGGAAA-CTTACCATCTGAGAG----TCCTTCGTC-TTTATGAATCA-A-CTTTA---T-T----------------TTTT-GC--AAC-TCTCTTATATAC---CCAGTTTT--ACAC-GT-AGCCTTAA-T---GGCA-TAT-GTTTAACACC-T--ACA--TTANTTGCCATCTGAAA-TCTTACGTA-ANAACCTC-AGCC----------ACGTTANT---AATCTGACAAGT-ATTGATA-CTACACAT-AGCT------CTAAAGCTGAAA----------AGTTGTATAACCGTATTTTTGTCGTAAGG-AATTGAATTGT--TTAAGCATT---T---AACA-C-AACCCGTATAT-C----CTGCTACACCACGATATTT--------AANTTTTTA-ATT-C--TT---GTT-TTGCGATANTC-CTATTTAT-----GCCTTT--CCCAGGGATT-TTTATTGGAAT-TTA---TGCGTC------TC----TTTC-----C------CGA---TTG--TTTTGTTCTGG-ACA-TGCGCTG---GGGTTTCAT--ATC--AAT-GAGAATGGGTTCA--TG-AGGCANAGGCTGGC---CC---TCC-----NTTTTCATTCGCTTC----ACATCCGA-T-CG-----------GCTCG----------------TTTTANTTCTTGGGCAA--TGGGACT-CACCAGTT-CTATCTTAGG--CTCAAC-TT--NCTCACCTT-TTCCCTTCTGAG-CTAC-----------AA-TCCAGTAA-CGAGGGGGAGGT---CCT----TTCCAATTGGCC-TGNGCTCTGAAGTGGTCTTT----CAATT-CCTCGACCGTGGGGACTTTAG-ATTCTAAATTCATATTCTGT
gi|1 : TTCCG-TTTTCGGT--CCATGATCTATTTTTA---GCATA----CTTAATTATA-CACAGACAAGATT--TAGACCATTGATCGTGTTTA---T---------AA------TGAAATTGTTTCCA-CT-T-TTTGA-AT-TT-TA-AC-CT-GC--A-TTCA--TAACA-----TTG-TA-AT--AAATCC------C--CGGGACC---CTTATAA-AAA---AAA---CCCGCTA-GC-GGTCAT-ATGAAGGACACC--A---AGTCC-TT--TCCAATCTATAA--ACGTATTCA-AGTGA-TC-ATGGAAA-CTTACCATCTGAGAG----TCCTTCGTC-TTTATGAATCT---CTTTA---T-T----------------TTTT-GC--AAC-TCTCATATATAC---CCAGTTTT--ACAC-GT-AGCCTTAA-----GGCA-TAT-GTTTAACACC-T--ACA--TTAGTTGCCATCTGAAA-TCTTATGTA-ACAACCTC-AGC-----------ATGTTAAT---AATCTGACAAGTTATTGATA-TTACACAT-AGCT------TTAAAGCTGAAA----------AGTTGTATAACCATATTTTTATCGTAAGG-AATTGAATTGT--TTTAGCATT---TTGTAACATC-AACCCGTATAT-C----CTGCTACACCACGATATTTTTTTTTTTAATTTTTTA-ATT-CCTTT---GTT-TTGTAATAGTC-CTATTTAT-----GTCTTT--CCCAGGGATT-TTTATTGAAAT-TTA---GGCGTC------TC----TTTT-----C------CGA---TTG--TTTTGTTTTGG-ACA-TGCGCTG---GGGTTTCAT--ATC--AAT-GAGAATGGGTTCA--TG-AGGCATAGGATGGC---CC---TCC-----TTTTTCATTCGCTTC----ACATCCGA-T-CG-----------GCTCG----------------TTTTATTTGTTGGGCAA--TGGGATT-CACCAGTA-CTATCTTAGG--CTCAAC-TT--GTTCACCTT-TTCCCTTCTGCG-CTAC-----------AA-TCCAGTAA-CGAGGGGGAGGT---CCT----TTCCAATTGGCC-TGAGCTCTGAAGTGGTCTTT----CAATT-CCTCGACCGTGGGGACTTTAG-ATTCTAAATTTATATTCTGT
gi|10 : -CTATTTACAAATGGCCTTTTACCCAGGA--T-TTTAT-GGAATGTTA---T-CGTCGAACTTTC----TTTCTATCTC------AGAAATTTGATTTTTGTTCTGG-ACA-TGCGC-GAGCGAGTTTCATCAATCTAGAT-GACACTTGG-CCACTTG-ACCAAAATGTTGGCATGTCAGATAC-----ATATTCA---ACCCC----ACA--CGA-T-CG-----------GCTCG----------------TTTTA
gi|11 : atagACA-----TTG-TA-CT--AAATCC------C--CGGGACC---CTTATAG-AAA---AA----CCCACTA-GC-GGCCAT-ATGAAGGGCACT--A---GGTCC-TT--TCCATCCTACAA--AGGTATTCA-AGCGA-TC-GTGGAAG-CTTACCATCTGAGGG----TCCTTCATC-TTTATGAATCA-A-TTCT
gi|12 : TGATA-GTGCACAT-AACT-----------------------------GTTGTATAACCGTATTTTTGTCGTAAGG-AATTGAACTGT--GTAAGCCTT---T----------------TATAT-C----CTGCAACAACACGA-ATAT--------AATTTTTTG-ATT-C-------GAT-TTACGATAtaaactcctattttta
gi|13 : AATC-CTATTTAT-----GCCTTT--CCCAGGGATT-TTTATTGGAAT-TTA---TGCGTC------TC----TTTC-----C------C
gi|15 : T-TTGCAATATTC-CTATTTAT-----GTCTTT--CCCAGGGATT-TTTATTGGAAT-
gi|2 : -T--TCAT-ATCTCTTTTTA---GCATA----TTCAATTACA-CACGGACAAGATT--TATACCATTGATCGTGTTCAAAAT---------AAGGGGAATGACATTGTTTCCA-CT-T-TTCCA-AT-TT-TA-AC-CC-GC--A-TTCA--TAACA-----TTG-CA-CT--AAATCC------C--CCGGACC---ATTATAG-AAA---AAAAAACTCGCTA-GC-GGCCAA-ATGAAGGGCACT--A---GGTCC-TT--TCCAGTCTACAT--ACGTATTCA-AGCGA-TC-ATGGAAA-CTTACCATCTGAGAG-----CCTTCATC----ATGAATCA---CTTTA---T-TATTATTATTTTTTTTTTTTT-GC--AAA-TGTTTTATATAT---CCAGTTT---ACAC-AT-AGCCTTAA-TTTAGGCA-T---GTTTAACACC-T--ACA--TTAGTTGCCATCTGAAA-TATTATGTA-ACAGCTTCTA--C----------ACGTTACT---AATCTGA--ATT-ATTGATA-CTACACAT-AGCT------CTAAAGATGAAA----------AGTTGTATAACCGTATATTTGTTGTAAGG-AATTGAATTGT--TTAAGCATTTTAT---AACA-CAAACCCGTATAT-C----CTGCTACACCATGACATTT--------AAA-----A-A-------A---AAT-TTGCAATACTC-CTATTTAT-----GTCTTT--CCCACGGATT-TTTATTGGGAT-TTA---GGTGTC------TC----TTTC-----
gi|3 : gtgcttttttctgttatgactcagctactccttctatcatgcccatacagctcggaaccacttttcgtgttccatcagtcgctcgtttgcT-ACCCTTAAAT---GGCAACAA-GAGTAGCACC-TGAACAGATTGCTTGTCATCTAAAAACCTTAC--A-AGCACCTA-AGCCTGTCTGACTCACCTTGATGCTAATTCTACAAGA-A-----A-CTGCAAAT-AGTTACTGTACTAAAGCTTAAATCATGAATGGAATTGTATAAC--TATTTTTTTAAAAAGACAAT---ATTTCCATTAACTATC---G---AGC--C-GACT--TATAT-CACCGTTGCCAACCCCCAAAAAAT--------AAATGTTTATATTTC--TT---CTTGTTACAATACTC-ATATTTAT-----CCCTCT--TCCATGTTTTATTTATCGGAAT-TTAGGGCGTGTT------TCGGTATTTC-----CGTAAGCCG----TTT--TTTTGTTCTGATACAATGCGTT-------TTACTT--ATC--AATTGAGAATGGATT-A--TGAAGGCAGAGGCTGCC---CC---TCCCAATTTTTTTCA-TCTCTTCGACGACATTC-A-T-CATAGCTGTTACTGCTCGCTAGTTCGACAACGTATCTCATTCTTTGAGCAAACCGGAACTACACCAGTTCCTATC--AGACTCTCAACGTTAATTTCACCTTAATCCCATGTAAACCCACCCCTTTCACTTAATTCCAGTAATCGAAAATATAGTAAACTTTACATTTCAATTGCTCGTGTCTTCTTGAATGGTCTCTCGCACAATTCCCTCGACCAT--GGAC--TAGTATTCTAAATTCACAGTTTGT
gi|4 : A-CTTACCATCTGAGAG----TCCTTCATC-TCTATGAATTA---CTTTA---T-T----------------TTTTTGC--AAC-TCTCTTATATAC---C-AGTTTTTTACTC-GT-AGCCTTAA-----AGCA-TAT-GTTTAACACCAT--ACA--TTATTT-CAATCTGAAA-TCTTACGTACAAAACCTC-AACT----------ATGTTACT---AATCTGACAAGT-ATTGATAACTACACATTAGCT------TTAAAGCTGCAA----------ACGTGTA-AACAATATTTT-GTCGTAAGA-AATTGAATTGT--TTAAGCAT---------------AACCCGTATATTC----CTGCTACACCACGATAATT--------A--TTTTTA-ATT-C--TTTTTGTT-TT-TGGCAATCTCAATTTAT-----GTCTTT--CCCAGGGATT-TTTATTCGAAT-ATA---TGCGTC------TC----TTTC-----C------CGA---TTG--TTTTGTTTTGG-ACA-TGCGCTG---GGGTTTCAT--ATA--AAT-GAGAATGGGTTCA--TG-AGGCATAGGCTGGC---CC---TCC-----TTTTTCATTCGCTTC----ACATCCGATT-CG-----------GCTCG----------------TTTTAGTTCTTGGGCAG--TGGGACT-CACCAGTT-CTATCTTAGA--CTCAAC-TT--TCTCACCTT-TTCCCTTCTGAG-CTAC-----------AA-TCCAGTAA-C-AGGta
gi|5 : TTCCAACT-TATTTCA-ATATT-TACAC-CCTGCTAA-TTCAATTAGCACCATCTTGGTA-CTTTAAATCCATTTCCC--CCGGACTTCACTTATAGTAAACATAAA---CCCGCTA-GCCGGCTATTATGAAAAGCACT--ATAGGGTCC-TTCTTCCAATCTACAA---CGTATTCA-AGCGA-TTTGTGGAAAACTCACCATCTGAGGGAAAATCCTTCATC-TTTATGAATCA-G-C-TTACCTT-T----------------TTTT-GCA-AAG-TCTCTTAT-TATTTACCAGTTTG--ACACTATGAGCCTGAA-----GGCA-AATCGTTTAACACC-T--ACA--
gi|6 : agctttcttatagctcatacagctcggagcactttcgtgtgccttgattacagatttgttttcggatatttctgttccataattcatattttattagctattatgatctcctcgagtttatcactgacggactatagtatcctgtcagatacaatattccgcatcgtgttcataatacacgccgggatattttattaaatttgtgtctctccaAATC-CTATTTAT-----GCCTTT--CCCAGGGATT-TTTATTGGAAT-TTA---TGCGTC------TC----TTTC-----C------CGA---TTG--TTTTGTTCTGG-ACA-TGCGCTG---GGGTTTCAT--ATC--AAT-GAGAATGG-----------------------C---CC---TCC-----ATTTTCATTCGTTTC----ACACCCGA-TTCG-----------GCTCG----------------TTTTAATTCTTGGGCAA--TGGGATT-CACCAGTT-CTATCTTAGG--CTCAAC-TG--CCTCACCTT-TTCTCTTCTGAG-CTAC-----------AA-TCCAGTAA-CGAGGGGGAGGT---CCT----TTCCAATTGGCC-TGGGCTCTGAGGTGGTCCTC----CAATT-CCTCGACCGTGGGGACTTTAG-ATTCTAAATTCATGTTCT
gi|7 : TTTTATGGGCATAAACGTTTAAT-ATAGCATGGTCAAGCTTGCTAGCCAATTGATCGTCTCTA---C---------A-------TGAAATTGTGTCCA-CTAT-TTTCATAT-GTGTA-ACGCC-GC--AATTC---TAA-A-----TT--TATCTC-AAATCC------CGCCCGGACC----TTATAG-AAA---AAG----CCGCTACGC-GGCCAT-ATGA--GGCACTTCA---GGTCCTTT--TCCACACGATAATTTCG-ATTCATAGCAAGTCAGTGGCAA-CTT-CCATCTGAGAA----TCCTTCGTCGTTTATGAATCATACCTTTA---TCT----------------TTTT-GCTAGACGTCTCTT
gi|8 : tttcgtgtttcgccaaacaACTTTCG-TGTCC-CGATACATTTTTA---GCATA----CTTAATTATA-CATGGTCAAGCTT--TAGACCATTGATCGTGTTCT---A---------AA------TGAAATTGTTTCCA-CT-A-TTTTA-AT-TT-TA-AC-CC-GC--A-TTCT--TAACA-----TTG-TA-CT--AAATCC------C--CCGGACC---CTTAT
gi|9 : tgttgctttgttatgactcactactccggccgatcatgcccatacacctcggagcTTCCGATTCTTG----CCATAATCTATTTTTA---GCATA----CTTAATCATA-CATGGTCAAAATT--TAGACCATTGATCGTGTTCA---TAATAAGGGGAA------TGAAATTGTTTCCA-CT-T-------AT-T-----------GG--A-TTTA--TAACA-----TTG-TA-nnnnnnnnnnnnnnnnnnnnnnnnnggggga
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|14 ): TTTCATGAATTGAGATTACACTTGACCACTTGATTGAGAATTTTGGTGTTAGAT
Unaligned ( gi|16 ): CTGTCCCGAATCTACCTTTTTTTGCAAACACTTTTTATAC
Alignments
lowQualScore : 2222 111 1111 11 666666666666666666666 111 11111 11 111111 1111 111 1111 111111 11 111 1 1111 333 5555555555555555555555 11 111 222 1 44444 11111 11 11 1 1 555555555555555 111 1 2222222 3333333333 11 666666666666666 1111 333333333333333333333333333333 11111 111 111111 1111 222222222222 1111 11 11111 11 11 1111111 111 111 222222 1 1111 33333333333 5555555555555555 11 1 1 11 1 111 1 1 44444444444 1 1 222 2222 1 2222 1 1
lowQualScore : 7 7777 3 6 444 7777 3 8 1 0 11 000000000000000000000 6 888 1 6 7777 6 6 6 99 6 222 44444 5 5 55 999999 99 4444 8 444 7777 8 8 8 0 666666 8 11 1 777 0 8 8 6 6 4444 0 6 111 7777777777777777777777 8 99 8 3 777 2 333 0 8 22222 77777 8 11 11 1 2 0 2 0 1 444444444444444 1 777 2 0 3 8 8 9999999 0 5555555555 0 66 0 8 0 11 888888888888888 5 8 7777 9 22 777777777777777777777777777777 1 6 3 0 1 5 22222 66 0 5 5 000 666666 2222 333333333333 4444 11 8 8 44444 11 11 8 9999999 8 3 3 444 444 111111 0 7777 3 8 8 88888888888 3333333333333333 1 0 33 0 0 3 33 0 444 0 0 77777777777 0 0 2 333 8888 3 1 8888 3 6 7 3
lowQualScore : . .... . . ... .... . . . . .. ..................... . ... . . .... . . . .. . ... ..... . . .. ...... .. .... . ... .... . . . . ...... . .. . ... . . . . . .... . . ... ...................... . .. . . ... . ... . . ..... ..... . .. .. . . . . . . ............... . ... . . . . . ....... . .......... . .. . . . .. ............... . . .... . .. .............................. . . . . . . ..... .. . . . ... ...... .... ............ .... .. . . ..... .. .. . ....... . . . ... ... ...... . .... . . . ........... ................ . . .. . . . .. . ... . . ........... . . . ... .... . . .... . . . .
lowQualScore : 3 0000 2 5 000 0000 8 0 4 6 00 000000000000000000000 7 777 0 7 5555 7 7 7 22 7 777 33333 7 7 88 222222 22 2222 0 000 8888 0 0 0 8 000000 0 00 0 000 8 0 0 0 7 2222 7 7 333 0000000000000000000000 0 00 0 2 555 5 000 0 0 44444 00000 0 00 00 0 5 0 5 0 0 000000000000000 0 555 5 0 2 0 0 4444444 6 0000000000 8 44 8 0 8 00 000000000000000 0 0 0000 0 88 666666666666666666666666666666 4 7 7 7 0 0 55555 99 4 0 0 000 444444 1111 555555555555 8888 00 0 0 88888 00 00 0 4444444 0 8 2 000 000 444444 6 0000 8 0 0 00000000000 0000000000000000 0 2 88 0 0 2 88 0 555 0 0 55555555555 0 0 5 333 3333 3 0 3333 3 7 3 3
consensus : TTCCGATTTTCG-T--CCATGATCTATTTTTA---GCATA----CTTAATTATA-CACGGTCAAGATT--TAGACCATTGATCGTGTTCA---T---------AA------TGAAATTGTTTCCA-CT-T-TTTCA-AT-TT-TA-AC-CC-GC--A-TTCA--TAACA-----TTG-TA-CT--AAATCC------C--CCGGACC---CTTATAG-AAA---AAA---CCCGCTA-GC-GGCCAT-ATGAAGGGCACT--A---GGTCC-TT--TCCANTCTACAA--ACGTATTCA-AGCGA-TC-GTGGAAA-CTTACCATCTGAGAG----TCCTTCGTC-TTTATGAATCA-A-CTTTA---T-T----------------TTTT-GC--AAC-TCTCTTATATAC---CCAGTTTT--ACAC-GT-AGCCTTAA-T---GGCA-TAT-GTTTAACACC-T--ACA--TTANTTGCCATCTGAAA-TCTTACGTA-ANAACCTC-AGCC----------ACGTTANT---AATCTGACAAGT-ATTGATA-CTACACAT-AGCT------CTAAAGCTGAAA----------AGTTGTATAACCGTATTTTTGTCGTAAGG-AATTGAATTGT--TTAAGCATT---T---AACA-C-AACCCGTATAT-C----CTGCTACACCACGATATTT--------AANTTTTTA-ATT-C--TT---GTT-TTGCGATANTC-CTATTTAT-----GCCTTT--CCCAGGGATT-TTTATTGGAAT-TTA---TGCGTC------TC----TTTC-----C------CGA---TTG--TTTTGTTCTGG-ACA-TGCGCTG---GGGTTTCAT--ATC--AAT-GAGAATGGGTTCA--TG-AGGCANAGGCTGGC---CC---TCC-----TTTTTCATTCGCTTC----ACATCCGA-T-CG-----------GCTCG----------------TTTTANTTCTTGGGCAA--TGGGACT-CACCAGTT-CTATCTTAGG--CTCAAC-TT--TCTCACCTT-TTCCCTTCTGAG-CTAC-----------AA-TCCAGTAA-CGAGGGGGAGGT---CCT----TTCCAATTGGCC-TGNGCTCTGAAGTGGTCTTT----CAATT-CCTCGACCGTGGGGACTTTAG-ATTCTAAATTCATATTCTGT
Reference ( family-1082 ) : TTCCGATTTTCG-T--CCATGATCTATTTTTA---GCATA----CTTAATTATA-CACGGTCAAGATT--TAGACCATTGATCGTGTTCA---T---------AA------TGAAATTGTTTCCA-CT-T-TTTCA-AT-TT-TA-AC-CC-GC--A-TTCA--TAACA-----TTG-TA-CT--AAATCC------C--CCGGACC---CTTATAG-AAA---AAA---CCCGCTA-GC-GGCCAT-ATGAAGGGCACT--A---GGTCC-TT--TCCANTCTACAA--ACGTATTCA-AGCGA-TC-GTGGAAA-CTTACCATCTGAGAG----TCCTTCGTC-TTTATGAATCA-A-CTTTA---T-T----------------TTTT-GC--AAC-TCTCTTATATAC---CCAGTTTT--ACAC-GT-AGCCTTAA-T---GGCA-TAT-GTTTAACACC-T--ACA--TTANTTGCCATCTGAAA-TCTTACGTA-ANAACCTC-AGCC----------ACGTTANT---AATCTGACAAGT-ATTGATA-CTACACAT-AGCT------CTAAAGCTGAAA----------AGTTGTATAACCGTATTTTTGTCGTAAGG-AATTGAATTGT--TTAAGCATT---T---AACA-C-AACCCGTATAT-C----CTGCTACACCACGATATTT--------AANTTTTTA-ATT-C--TT---GTT-TTGCGATANTC-CTATTTAT-----GCCTTT--CCCAGGGATT-TTTATTGGAAT-TTA---TGCGTC------TC----TTTC-----C------CGA---TTG--TTTTGTTCTGG-ACA-TGCGCTG---GGGTTTCAT--ATC--AAT-GAGAATGGGTTCA--TG-AGGCANAGGCTGGC---CC---TCC-----TTTTTCATTCGCTTC----ACATCCGA-T-CG-----------GCTCG----------------TTTTANTTCTTGGGCAA--TGGGACT-CACCAGTT-CTATCTTAGG--CTCAAC-TT--TCTCACCTT-TTCCCTTCTGAG-CTAC-----------AA-TCCAGTAA-CGAGGGGGAGGT---CCT----TTCCAATTGGCC-TGNGCTCTGAAGTGGTCTTT----CAATT-CCTCGACCGTGGGGACTTTAG-ATTCTAAATTCATATTCTGT
gi|1 : TTCCG-TTTTCGGT--CCATGATCTATTTTTA---GCATA----CTTAATTATA-CACAGACAAGATT--TAGACCATTGATCGTGTTTA---T---------AA------TGAAATTGTTTCCA-CT-T-TTTGA-AT-TT-TA-AC-CT-GC--A-TTCA--TAACA-----TTG-TA-AT--AAATCC------C--CGGGACC---CTTATAA-AAA---AAA---CCCGCTA-GC-GGTCAT-ATGAAGGACACC--A---AGTCC-TT--TCCAATCTATAA--ACGTATTCA-AGTGA-TC-ATGGAAA-CTTACCATCTGAGAG----TCCTTCGTC-TTTATGAATCT---CTTTA---T-T----------------TTTT-GC--AAC-TCTCATATATAC---CCAGTTTT--ACAC-GT-AGCCTTAA-----GGCA-TAT-GTTTAACACC-T--ACA--TTAGTTGCCATCTGAAA-TCTTATGTA-ACAACCTC-AGC-----------ATGTTAAT---AATCTGACAAGTTATTGATA-TTACACAT-AGCT------TTAAAGCTGAAA----------AGTTGTATAACCATATTTTTATCGTAAGG-AATTGAATTGT--TTTAGCATT---TTGTAACATC-AACCCGTATAT-C----CTGCTACACCACGATATTTTTTTTTTTAATTTTTTA-ATT-CCTTT---GTT-TTGTAATAGTC-CTATTTAT-----GTCTTT--CCCAGGGATT-TTTATTGAAAT-TTA---GGCGTC------TC----TTTT-----C------CGA---TTG--TTTTGTTTTGG-ACA-TGCGCTG---GGGTTTCAT--ATC--AAT-GAGAATGGGTTCA--TG-AGGCATAGGATGGC---CC---TCC-----TTTTTCATTCGCTTC----ACATCCGA-T-CG-----------GCTCG----------------TTTTATTTGTTGGGCAA--TGGGATT-CACCAGTA-CTATCTTAGG--CTCAAC-TT--GTTCACCTT-TTCCCTTCTGCG-CTAC-----------AA-TCCAGTAA-CGAGGGGGAGGT---CCT----TTCCAATTGGCC-TGAGCTCTGAAGTGGTCTTT----CAATT-CCTCGACCGTGGGGACTTTAG-ATTCTAAATTTATATTCTGT
gi|10 : -CTATTTACAAATGGCCTTTTACCCAGGA--T-TTTAT-GGAATGTTA---T-CGTCGAACTTTC----TTTCTATCTC------AGAAATTTGATTTTTGTTCTGG-ACA-TGCGC-GAGCGAGTTTCATCAATCTAGAT-GACACTTGG-CCACTTG-ACCAAAATGTTGGCATGTCAGATAC-----ATATTCA---ACCCC----ACA--CGA-T-CG-----------GCTCG----------------TTTTA
gi|11 : atagACA-----TTG-TA-CT--AAATCC------C--CGGGACC---CTTATAG-AAA---AA----CCCACTA-GC-GGCCAT-ATGAAGGGCACT--A---GGTCC-TT--TCCATCCTACAA--AGGTATTCA-AGCGA-TC-GTGGAAG-CTTACCATCTGAGGG----TCCTTCATC-TTTATGAATCA-A-TTCT
gi|12 : TGATA-GTGCACAT-AACT-----------------------------GTTGTATAACCGTATTTTTGTCGTAAGG-AATTGAACTGT--GTAAGCCTT---T----------------TATAT-C----CTGCAACAACACGA-ATAT--------AATTTTTTG-ATT-C-------GAT-TTACGATAtaaactcctattttta
gi|13 : AATC-CTATTTAT-----GCCTTT--CCCAGGGATT-TTTATTGGAAT-TTA---TGCGTC------TC----TTTC-----C------C
gi|15 : T-TTGCAATATTC-CTATTTAT-----GTCTTT--CCCAGGGATT-TTTATTGGAAT-
gi|2 : -T--TCAT-ATCTCTTTTTA---GCATA----TTCAATTACA-CACGGACAAGATT--TATACCATTGATCGTGTTCAAAAT---------AAGGGGAATGACATTGTTTCCA-CT-T-TTCCA-AT-TT-TA-AC-CC-GC--A-TTCA--TAACA-----TTG-CA-CT--AAATCC------C--CCGGACC---ATTATAG-AAA---AAAAAACTCGCTA-GC-GGCCAA-ATGAAGGGCACT--A---GGTCC-TT--TCCAGTCTACAT--ACGTATTCA-AGCGA-TC-ATGGAAA-CTTACCATCTGAGAG-----CCTTCATC----ATGAATCA---CTTTA---T-TATTATTATTTTTTTTTTTTT-GC--AAA-TGTTTTATATAT---CCAGTTT---ACAC-AT-AGCCTTAA-TTTAGGCA-T---GTTTAACACC-T--ACA--TTAGTTGCCATCTGAAA-TATTATGTA-ACAGCTTCTA--C----------ACGTTACT---AATCTGA--ATT-ATTGATA-CTACACAT-AGCT------CTAAAGATGAAA----------AGTTGTATAACCGTATATTTGTTGTAAGG-AATTGAATTGT--TTAAGCATTTTAT---AACA-CAAACCCGTATAT-C----CTGCTACACCATGACATTT--------AAA-----A-A-------A---AAT-TTGCAATACTC-CTATTTAT-----GTCTTT--CCCACGGATT-TTTATTGGGAT-TTA---GGTGTC------TC----TTTC-----
gi|3 : gtgcttttttctgttatgactcagctactccttctatcatgcccatacagctcggaaccacttttcgtgttccatcagtcgctcgtttgcT-ACCCTTAAAT---GGCAACAA-GAGTAGCACC-TGAACAGATTGCTTGTCATCTAAAAACCTTAC--A-AGCACCTA-AGCCTGTCTGACTCACCTTGATGCTAATTCTACAAGA-A-----A-CTGCAAAT-AGTTACTGTACTAAAGCTTAAATCATGAATGGAATTGTATAAC--TATTTTTTTAAAAAGACAAT---ATTTCCATTAACTATC---G---AGC--C-GACT--TATAT-CACCGTTGCCAACCCCCAAAAAAT--------AAATGTTTATATTTC--TT---CTTGTTACAATACTC-ATATTTAT-----CCCTCT--TCCATGTTTTATTTATCGGAAT-TTAGGGCGTGTT------TCGGTATTTC-----CGTAAGCCG----TTT--TTTTGTTCTGATACAATGCGTT-------TTACTT--ATC--AATTGAGAATGGATT-A--TGAAGGCAGAGGCTGCC---CC---TCCCAATTTTTTTCA-TCTCTTCGACGACATTC-A-T-CATAGCTGTTACTGCTCGCTAGTTCGACAACGTATCTCATTCTTTGAGCAAACCGGAACTACACCAGTTCCTATC--AGACTCTCAACGTTAATTTCACCTTAATCCCATGTAAACCCACCCCTTTCACTTAATTCCAGTAATCGAAAATATAGTAAACTTTACATTTCAATTGCTCGTGTCTTCTTGAATGGTCTCTCGCACAATTCCCTCGACCAT--GGAC--TAGTATTCTAAATTCACAGTTTGT
gi|4 : A-CTTACCATCTGAGAG----TCCTTCATC-TCTATGAATTA---CTTTA---T-T----------------TTTTTGC--AAC-TCTCTTATATAC---C-AGTTTTTTACTC-GT-AGCCTTAA-----AGCA-TAT-GTTTAACACCAT--ACA--TTATTT-CAATCTGAAA-TCTTACGTACAAAACCTC-AACT----------ATGTTACT---AATCTGACAAGT-ATTGATAACTACACATTAGCT------TTAAAGCTGCAA----------ACGTGTA-AACAATATTTT-GTCGTAAGA-AATTGAATTGT--TTAAGCAT---------------AACCCGTATATTC----CTGCTACACCACGATAATT--------A--TTTTTA-ATT-C--TTTTTGTT-TT-TGGCAATCTCAATTTAT-----GTCTTT--CCCAGGGATT-TTTATTCGAAT-ATA---TGCGTC------TC----TTTC-----C------CGA---TTG--TTTTGTTTTGG-ACA-TGCGCTG---GGGTTTCAT--ATA--AAT-GAGAATGGGTTCA--TG-AGGCATAGGCTGGC---CC---TCC-----TTTTTCATTCGCTTC----ACATCCGATT-CG-----------GCTCG----------------TTTTAGTTCTTGGGCAG--TGGGACT-CACCAGTT-CTATCTTAGA--CTCAAC-TT--TCTCACCTT-TTCCCTTCTGAG-CTAC-----------AA-TCCAGTAA-C-AGGta
gi|5 : TTCCAACT-TATTTCA-ATATT-TACAC-CCTGCTAA-TTCAATTAGCACCATCTTGGTA-CTTTAAATCCATTTCCC--CCGGACTTCACTTATAGTAAACATAAA---CCCGCTA-GCCGGCTATTATGAAAAGCACT--ATAGGGTCC-TTCTTCCAATCTACAA---CGTATTCA-AGCGA-TTTGTGGAAAACTCACCATCTGAGGGAAAATCCTTCATC-TTTATGAATCA-G-C-TTACCTT-T----------------TTTT-GCA-AAG-TCTCTTAT-TATTTACCAGTTTG--ACACTATGAGCCTGAA-----GGCA-AATCGTTTAACACC-T--ACA--
gi|6 : agctttcttatagctcatacagctcggagcactttcgtgtgccttgattacagatttgttttcggatatttctgttccataattcatattttattagctattatgatctcctcgagtttatcactgacggactatagtatcctgtcagatacaatattccgcatcgtgttcataatacacgccgggatattttattaaatttgtgtctctccaAATC-CTATTTAT-----GCCTTT--CCCAGGGATT-TTTATTGGAAT-TTA---TGCGTC------TC----TTTC-----C------CGA---TTG--TTTTGTTCTGG-ACA-TGCGCTG---GGGTTTCAT--ATC--AAT-GAGAATGG-----------------------C---CC---TCC-----ATTTTCATTCGTTTC----ACACCCGA-TTCG-----------GCTCG----------------TTTTAATTCTTGGGCAA--TGGGATT-CACCAGTT-CTATCTTAGG--CTCAAC-TG--CCTCACCTT-TTCTCTTCTGAG-CTAC-----------AA-TCCAGTAA-CGAGGGGGAGGT---CCT----TTCCAATTGGCC-TGGGCTCTGAGGTGGTCCTC----CAATT-CCTCGACCGTGGGGACTTTAG-ATTCTAAATTCATGTTCT
gi|7 : TTTTATGGGCATAAACGTTTAAT-ATAGCATGGTCAAGCTTGCTAGCCAATTGATCGTCTCTA---C---------A-------TGAAATTGTGTCCA-CTAT-TTTCATAT-GTGTA-ACGCC-GC--AATTC---TAA-A-----TT--TATCTC-AAATCC------CGCCCGGACC----TTATAG-AAA---AAG----CCGCTACGC-GGCCAT-ATGA--GGCACTTCA---GGTCCTTT--TCCACACGATAATTTCG-ATTCATAGCAAGTCAGTGGCAA-CTT-CCATCTGAGAA----TCCTTCGTCGTTTATGAATCATACCTTTA---TCT----------------TTTT-GCTAGACGTCTCTT
gi|8 : tttcgtgtttcgccaaacaACTTTCG-TGTCC-CGATACATTTTTA---GCATA----CTTAATTATA-CATGGTCAAGCTT--TAGACCATTGATCGTGTTCT---A---------AA------TGAAATTGTTTCCA-CT-A-TTTTA-AT-TT-TA-AC-CC-GC--A-TTCT--TAACA-----TTG-TA-CT--AAATCC------C--CCGGACC---CTTAT
gi|9 : tgttgctttgttatgactcactactccggccgatcatgcccatacacctcggagcTTCCGATTCTTG----CCATAATCTATTTTTA---GCATA----CTTAATCATA-CATGGTCAAAATT--TAGACCATTGATCGTGTTCA---TAATAAGGGGAA------TGAAATTGTTTCCA-CT-T-------AT-T-----------GG--A-TTTA--TAACA-----TTG-TA-nnnnnnnnnnnnnnnnnnnnnnnnnggggga
blockSeqs : A TGT A G TGG AACG T G A GC AAATAAGGGGAA A TA C T ATT C G T TA A AAT CCATC G T TT ATTTCC GC TCAC T CAT AAAA C C T ATAG T CT T TTT T G T A AAAA G TAC TTATTATTATTTTTTTTT T TA G A TTA C TTT T G TTTA ACAA A GA GA G G A G C C AGCCTGTCTGACTC C GCT C . T A T ACTGTAC TCATGAATGG CG C CA TTTATAACACA C T ACCG C TA AAATGTTTATATTTCTT A G A A T AAATG TA A G GGG GAACTT GGTA CGTAAGC AAAT AT T A GAGC CA TA T GCCACT A A T ATG AGA CAATTT T GACG T T T TAGCTGTTACT CTAGTTCGACAACGTA T AC A C T CT G AAT A C CCCTTTCACTT T T G AAA TACA G T CGCA C G T T
blockSeqs : A T A A . . T . T . TAATAAGGGGAA . AT C . GTG . . . . . A . . . C . . C . . A . . . TCA . . G A . . A . . . A CCTTT . A . A . C G . . AT AATC . . . C G . G . G AACT A . C . T . . C . CG . . CGAGCC C . . A TT ATTTTTAATTCTTTTT A . G T . . . . . . . . TATCTC A . . . TG . . . GTTCA . G C . . A T . T . . . . G . . . T . . T . . . . . G . . . G . . . . .
blockSeqs : . . . . . C . T . AAA . T C . TT . . . . . T . . . . . . A . . G . . . A . . A A . . . . . . G TCT . . . . . . . . . . TAT . . . T . . . . A TAC C . . . . . . T . AA . . TT . . . T AA AATTTTTTGATTC T . G C . . . . . . . . C A . . . TG . . . ATTA . T C . . T . . C . . . . A . . . . . . C . . . . . .
blockSeqs : . . . . T . CA . A T . TT . . . . . A . . . . . . C . . . . . . A . . C . . . . . . . . TT . . . . . T . . . . . . . . . . . . . . . AT AAAAAA T . A C . . . . . . . . C . . . . T . . . . . . . . . A . . . . . . .
blockSeqs : . T . . T . . . . . . . . . . . . . . . . . . . A . . . . . . . . C
blockSeqs : . . . A . . . . . . . .
blockSeqs : . . . . .
blockSeqCons : NAA****************** GTT* TCT******************* AT*** CC************* AATTTTTAATTC******************
originalCons : TTCCGATTTTCG-T--CCATGATCTATTTTTA---GCATA----CTTAATTATA-CACGGTCAAGATT--TAGACCATTGATCGTGTTCA---T---------AA------TGAAATTGTTTCCA-CT-T-TTTCA-AT-TT-TA-AC-CC-GC--A-TTCA--TAACA-----TTG-TA-CT--AAATCC------C--CCGGACC---CTTATAG-AAA---AAA---CCCGCTA-GC-GGCCAT-ATGAAGGGCACT--A---GGTCC-TT--TCCANTCTACAA--ACGTATTCA-AGCGA-TC-GTGGAAA-CTTACCATCTGAGAG----TCCTTCGTC-TTTATGAATCA-A-CTTTA---T-T----------------TTTT-GC--AAC-TCTCTTATATAC---CCAGTTTT--ACAC-GT-AGCCTTAA-T---GGCA-TAT-GTTTAACACC-T--ACA--TTANTTGCCATCTGAAA-TCTTACGTA-ANAACCTC-AGCC----------ACGTTANT---AATCTGACAAGT-ATTGATA-CTACACAT-AGCT------CTAAAGCTGAAA----------AGTTGTATAACCGTATTTTTGTCGTAAGG-AATTGAATTGT--TTAAGCATT---T---AACA-C-AACCCGTATAT-C----CTGCTACACCACGATATTT--------AANTTTTTA-ATT-C--TT---GTT-TTGCGATANTC-CTATTTAT-----GCCTTT--CCCAGGGATT-TTTATTGGAAT-TTA---TGCGTC------TC----TTTC-----C------CGA---TTG--TTTTGTTCTGG-ACA-TGCGCTG---GGGTTTCAT--ATC--AAT-GAGAATGGGTTCA--TG-AGGCANAGGCTGGC---CC---TCC-----TTTTTCATTCGCTTC----ACATCCGA-T-CG-----------GCTCG----------------TTTTANTTCTTGGGCAA--TGGGACT-CACCAGTT-CTATCTTAGG--CTCAAC-TT--TCTCACCTT-TTCCCTTCTGAG-CTAC-----------AA-TCCAGTAA-CGAGGGGGAGGT---CCT----TTCCAATTGGCC-TGNGCTCTGAAGTGGTCTTT----CAATT-CCTCGACCGTGGGGACTTTAG-ATTCTAAATTCATATTCTGT
finalCons : TTCCGATTTTCG-T--CCATGATCTATTTTTA---GCATA----CTTAATTATA-CACGGTCAAGATT--TAGACCATTGATCGTGTTCANAA------------------TGAAATTGTTTCCA-CT-T-TTTCA-ATGTT-TA-AC-CC-GC--A-TTCA--TAACA-----TTG-TA-CT--AAATCC------C--CCGGACC---CTTATAG-AAA---AAA---CCCGCTA-GC-GGCCAT-ATGAAGGGCACT--A---GGTCC-TT--TCCANTCTACAA--ACGTATTCA-AGCGA-TC-GTGGAAA-CTTACCATCTGAGAG----TCCTTCGTC-TTTATGAATCA-A-CTTTATCT-------------------TTTT-GC--AAC-TCTCTTATATAC---CCAGTTTT--ACAC-GT-AGCCTTAA-T---GGCAAT---GTTTAACACC-T--ACA--TTANTTGCCATCTGAAA-TCTTACGTA-ANAACCTC-AGCC----------ACGTTANT---AATCTGACAAGT-ATTGATA-CTACACAT-AGCT------CTAAAGCTGAAA----------AGTTGTATAACCGTATTTTTGTCGTAAGG-AATTGAATTGT--TTAAGCATCC-------------AACCCGTATAT-C----CTGCTACACCACGATATTTAATTTTTAATTC------------------GTT-TTGCGATANTC-CTATTTAT-----GCCTTT--CCCAGGGATT-TTTATTGGAAT-TTA---TGCGTC------TC----TTTC-----C------CGA---TTG--TTTTGTTCTGG-ACA-TGCGCTG---GGGTTTCAT--ATC--AAT-GAGAATGGGTTCA--TG-AGGCANAGGCTGGC---CC---TCC-----TTTTTCATTCGCTTC----ACATCCGA-T-CG-----------GCTCG----------------TTTTANTTCTTGGGCAA--TGGGACT-CACCAGTT-CTATCTTAGG--CTCAAC-TT--TCTCACCTT-TTCCCTTCTGAG-CTAC-----------AA-TCCAGTAA-CGAGGGGGAGGT---CCT----TTCCAATTGGCC-TGNGCTCTGAAGTGGTCTTT----CAATT-CCTCGACCGTGGGGACTTTAG-ATTCTAAATTCATATTCTGT
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|14 ): TTTCATGAATTGAGATTACACTTGACCACTTGATTGAGAATTTTGGTGTTAGAT
Unaligned ( gi|16 ): CTGTCCCGAATCTACCTTTTTTTGCAAACACTTTTTATAC
Alignments
lowQualScore : 2222 111 1111 11 333333333333333333 1111 2 111 11111 11 111111 1111 111 1111 111111 11 111 1 1111 2222 6666666666666666666 11 111 11 1 44444 22222222 11 11 1 1 555555555555555 111 1 2222222 3333333333 11 88888888888888888888 11 11 333333333 44444444444444444444444444444 11111 11111 111 111111 1111 222222222222 1111 11 11111 11 11 1111111 111 111 222222 1 1111 33333333333 5555555555555555 11 1 1 11 1 111 1 1 44444444444 1 1 222 2222 1 2222 1 1
lowQualScore : 7 7777 3 6 444 7777 3 8 1 0 11 555555555555555555 7777 6 888 666 1 6 6 6 99 6 222 44444 5 5 55 999999 99 4444 8 444 7777 8 8 8 0 666666 8 11 1 777 0 8 8 6 6 4444 0 6 6666 1111111111111111111 99 8 3 777 2 3 33 0 8 22222 66666666 8 11 11 1 2 0 2 0 1 444444444444444 1 777 3 0 3 8 8 9999999 0 5555555555 0 66 0 8 0 11 0 22222222222222222222 11 8 8 11 222222222 3 99999999999999999999999999999 44444 1 5 22222 66 0 5 5 000 666666 2222 333333333333 4444 11 8 8 44444 11 11 8 9999999 8 3 3 444 444 111111 0 7777 3 8 8 88888888888 3333333333333333 1 0 33 0 0 3 33 0 444 0 0 77777777777 0 0 2 333 8888 3 1 8888 3 6 7 3
lowQualScore : . .... . . ... .... . . . . .. .................. .... . ... ... . . . . .. . ... ..... . . .. ...... .. .... . ... .... . . . . ...... . .. . ... . . . . . .... . . .... ................... .. . . ... . . .. . . ..... ........ . .. .. . . . . . . ............... . ... . . . . . ....... . .......... . .. . . . .. . .................... .. . . .. ......... . ............................. ..... . . ..... .. . . . ... ...... .... ............ .... .. . . ..... .. .. . ....... . . . ... ... ...... . .... . . . ........... ................ . . .. . . . .. . ... . . ........... . . . ... .... . . .... . . . .
lowQualScore : 3 0000 2 5 000 0000 8 0 4 6 00 888888888888888888 0000 7 777 888 8 7 7 7 22 7 777 33333 7 7 88 222222 22 2222 0 000 8888 0 0 0 8 000000 0 00 0 000 8 0 0 0 7 2222 7 7 7777 4444444444444444444 00 0 2 555 5 2 88 0 0 44444 88888888 0 00 00 0 5 0 5 0 0 000000000000000 0 555 2 0 2 0 0 4444444 6 0000000000 8 44 8 0 8 00 8 22222222222222222222 00 0 0 00 000000000 8 88888888888888888888888888888 88888 0 0 55555 99 4 0 0 000 444444 1111 555555555555 8888 00 0 0 88888 00 00 0 4444444 0 8 2 000 000 444444 6 0000 8 0 0 00000000000 0000000000000000 0 2 88 0 0 2 88 0 555 0 0 55555555555 0 0 5 333 3333 3 0 3333 3 7 3 3
consensus : TTCCGATTTTCG-T--CCATGATCTATTTTTA---GCATA----CTTAATTATA-CACGGTCAAGATT--TAGACCATTGATCGTGTTCA---------NAAT-----GAA----ATTGTTTCCA-CT-T-TTTCA-AT-TTTA-AC-CC-GC--A-TTCA--TAACA-----TTG-TA-CT--AAATCC------C--CCGGACC---CTTATAG-AAA---AAA---CCCGCTA-GC-GGCCAT-ATGAAGGGCACT--A---GGTCC-TT--TCCANTCTACAA--ACGTATTCA-AGCGA-TC-GTGGAAA-CTTACCATCTGAGAG----TCCTTCGTC-TTTATGAATCA-A-CTTTA---------------TC--TTTTTGC--AAC-TCTCTTATATAC---CCAGTTTT--ACAC-GT-AGCCTTAA-T---GGCATA--C--GTTTAACACC-T--ACA--TTANTTGCCATCTGAAA-TCTTACGTA-ANAACCTC-AGCC----------ACGTTANT---AATCTGACAAGT-ATTGATA-CTACACAT-AGCT------CTAAAGCTGAAA----------AGTTGTATAACCGTATTTTTGTCGTAAGG-AATTGAATTGT--TTAAGCAT---------C----------AACC--CGTATAT-C-CTGCTAC--ACCAC---------GATATTT--------A-A-TTTTT-AATTC----GTTTTGC----GATANTC-CTATTTAT-----GCCTTT--CCCAGGGATT-TTTATTGGAAT-TTA---TGCGTC------TC----TTTC-----C------CGA---TTG--TTTTGTTCTGG-ACA-TGCGCTG---GGGTTTCAT--ATC--AAT-GAGAATGGGTTCA--TG-AGGCANAGGCTGGC---CC---TCC-----TTTTTCATTCGCTTC----ACATCCGA-T-CG-----------GCTCG----------------TTTTANTTCTTGGGCAA--TGGGACT-CACCAGTT-CTATCTTAGG--CTCAAC-TT--TCTCACCTT-TTCCCTTCTGAG-CTAC-----------AA-TCCAGTAA-CGAGGGGGAGGT---CCT----TTCCAATTGGCC-TGNGCTCTGAAGTGGTCTTT----CAATT-CCTCGACCGTGGGGACTTTAG-ATTCTAAATTCATATTCTGT
Reference ( family-1082 ) : TTCCGATTTTCG-T--CCATGATCTATTTTTA---GCATA----CTTAATTATA-CACGGTCAAGATT--TAGACCATTGATCGTGTTCA---------NAAT-----GAA----ATTGTTTCCA-CT-T-TTTCA-ATGTTTA-AC-CC-GC--A-TTCA--TAACA-----TTG-TA-CT--AAATCC------C--CCGGACC---CTTATAG-AAA---AAA---CCCGCTA-GC-GGCCAT-ATGAAGGGCACT--A---GGTCC-TT--TCCANTCTACAA--ACGTATTCA-AGCGA-TC-GTGGAAA-CTTACCATCTGAGAG----TCCTTCGTC-TTTATGAATCA-A-CTTTA---------------TC--TTTTTGC--AAC-TCTCTTATATAC---CCAGTTTT--ACAC-GT-AGCCTTAA-T---GGCA-A--T--GTTTAACACC-T--ACA--TTANTTGCCATCTGAAA-TCTTACGTA-ANAACCTC-AGCC----------ACGTTANT---AATCTGACAAGT-ATTGATA-CTACACAT-AGCT------CTAAAGCTGAAA----------AGTTGTATAACCGTATTTTTGTCGTAAGG-AATTGAATTGT--TTAAGCAT---------C---------CAACC--CGTATAT-C-CTGCTAC--ACCAC---------GATATTT--------A-A-TTTTT-AATTC----GTTTTGC----GATANTC-CTATTTAT-----GCCTTT--CCCAGGGATT-TTTATTGGAAT-TTA---TGCGTC------TC----TTTC-----C------CGA---TTG--TTTTGTTCTGG-ACA-TGCGCTG---GGGTTTCAT--ATC--AAT-GAGAATGGGTTCA--TG-AGGCANAGGCTGGC---CC---TCC-----TTTTTCATTCGCTTC----ACATCCGA-T-CG-----------GCTCG----------------TTTTANTTCTTGGGCAA--TGGGACT-CACCAGTT-CTATCTTAGG--CTCAAC-TT--TCTCACCTT-TTCCCTTCTGAG-CTAC-----------AA-TCCAGTAA-CGAGGGGGAGGT---CCT----TTCCAATTGGCC-TGNGCTCTGAAGTGGTCTTT----CAATT-CCTCGACCGTGGGGACTTTAG-ATTCTAAATTCATATTCTGT
gi|1 : TTCCG-TTTTCGGT--CCATGATCTATTTTTA---GCATA----CTTAATTATA-CACAGACAAGATT--TAGACCATTGATCGTGTTTA---------TAAT-----GAA----ATTGTTTCCA-CT-T-TTTGA-AT-TTTA-AC-CT-GC--A-TTCA--TAACA-----TTG-TA-AT--AAATCC------C--CGGGACC---CTTATAA-AAA---AAA---CCCGCTA-GC-GGTCAT-ATGAAGGACACC--A---AGTCC-TT--TCCAATCTATAA--ACGTATTCA-AGTGA-TC-ATGGAAA-CTTACCATCTGAGAG----TCCTTCGTC-TTTATGAATCT---CTTTA---------------T---TTTTTGC--AAC-TCTCATATATAC---CCAGTTTT--ACAC-GT-AGCCTTAA-----GGCATA--T--GTTTAACACC-T--ACA--TTAGTTGCCATCTGAAA-TCTTATGTA-ACAACCTC-AGC-----------ATGTTAAT---AATCTGACAAGTTATTGATA-TTACACAT-AGCT------TTAAAGCTGAAA----------AGTTGTATAACCATATTTTTATCGTAAGG-AATTGAATTGT--TTTAGCAT---------TTTGTAACATCAACC--CGTATAT-C-CTGCTAC--ACCAC---------GATATTTTTTTTTTTA-A-TTTTTTAATTCCTTTGTTTTGT----AATAGTC-CTATTTAT-----GTCTTT--CCCAGGGATT-TTTATTGAAAT-TTA---GGCGTC------TC----TTTT-----C------CGA---TTG--TTTTGTTTTGG-ACA-TGCGCTG---GGGTTTCAT--ATC--AAT-GAGAATGGGTTCA--TG-AGGCATAGGATGGC---CC---TCC-----TTTTTCATTCGCTTC----ACATCCGA-T-CG-----------GCTCG----------------TTTTATTTGTTGGGCAA--TGGGATT-CACCAGTA-CTATCTTAGG--CTCAAC-TT--GTTCACCTT-TTCCCTTCTGCG-CTAC-----------AA-TCCAGTAA-CGAGGGGGAGGT---CCT----TTCCAATTGGCC-TGAGCTCTGAAGTGGTCTTT----CAATT-CCTCGACCGTGGGGACTTTAG-ATTCTAAATTTATATTCTGT
gi|10 : -CTATTTACAAATGGCCTTTTACCCAGGA--T-TTTAT-GGAATGTTA---T-CGTCGAACTTTC----TTTCTATCTC------AGAAATTTGATTTTTGTTCTGG-ACA-TGCGC-GAGCGAGTTTCATCAATCTAGAT-GACACTTGG-CCACTTG-ACCAAAATGTTGGCATGTCAGATAC-----ATATTCA---ACCCC----ACA--CGA-T-CG-----------GCTCG----------------TTTTA
gi|11 : atagACA-----TTG-TA-CT--AAATCC------C--CGGGACC---CTTATAG-AAA---AA----CCCACTA-GC-GGCCAT-ATGAAGGGCACT--A---GGTCC-TT--TCCATCCTACAA--AGGTATTCA-AGCGA-TC-GTGGAAG-CTTACCATCTGAGGG----TCCTTCATC-TTTATGAATCA-A-TTCT
gi|12 : TGATA-GTGCACAT-AACT-----------------------------GTTGTATAACCGTATTTTTGTCGTAAGG-AATTGAACTGT--GTAAGC------------------------CT--TTTATAT-C-CTGCAAC--AACAC---------GA-ATAT--------A-ATTTTTT-GATTC----GATTTAC----GATAtaaactcctattttta
gi|13 : AATC-CTATTTAT-----GCCTTT--CCCAGGGATT-TTTATTGGAAT-TTA---TGCGTC------TC----TTTC-----C------C
gi|15 : TTTGC----AATATTC-CTATTTAT-----GTCTTT--CCCAGGGATT-TTTATTGGAAT-
gi|2 : -T--TCAT-ATCTCTTTTTA---GCATA----TTCAATTACA-CACGGACAAGATT--TATACCATTGATCGTGTTCA---------AAATAAGGGGAATGACATTGTTTCCA-CT-T-TTCCA-AT-TTTA-AC-CC-GC--A-TTCA--TAACA-----TTG-CA-CT--AAATCC------C--CCGGACC---ATTATAG-AAA---AAAAAACTCGCTA-GC-GGCCAA-ATGAAGGGCACT--A---GGTCC-TT--TCCAGTCTACAT--ACGTATTCA-AGCGA-TC-ATGGAAA-CTTACCATCTGAGAG-----CCTTCATC----ATGAATC--A-CTTTATTATTATTATTTTTTTT--TTTTTGC--AAA-TGTTTTATATAT---CCAG-TTT--ACAC-AT-AGCCTTAA-TTTAGGC--A--T--GTTTAACACC-T--ACA--TTAGTTGCCATCTGAAA-TATTATGTA-ACAGCTTCTA--C----------ACGTTACT---AATCTG--AATT-ATTGATA-CTACACAT-AGCT------CTAAAGATGAAA----------AGTTGTATAACCGTATATTTGTTGTAAGG-AATTGAATTGT--TTAAGCATTTTATAACAC---------AAACC--CGTATAT-C-CTGCTAC--ACCAT---------GACATTT--------A-A-------AA-AA----AATTTGC----AATACTC-CTATTTAT-----GTCTTT--CCCACGGATT-TTTATTGGGAT-TTA---GGTGTC------TC----TTTC-----
gi|3 : gtgcttttttctgttatgactcagctactccttctatcatgcccatacagctcggaaccacttttcgtgttccatcagtcgctcgtttgcT-ACCCTTAAAT---GGCA-A--CAAGAGTAGCACC-TGAACAGATTGCTTGTCATCTAAAAACCTTAC--A-AGCACCTA-AGCCTGTCTGACTCACCTTGATGCTAATTCTACAAGA-A-----A-CTGCAAAT-AGTTACTGTACTAAAGCTTAAATCATGAATGGAATTGTATAAC--TATTTTTTTAAAAAGACAAT---ATTTCCATTAACTAT---------C---------GAGCCGACTTATAT-CACCGTTGCCAACCCCCAAAAAATAAATGTTT--------ATA-TTTCT----TC----TTGTTAC----AATACTC-ATATTTAT-----CCCTCT--TCCATGTTTTATTTATCGGAAT-TTAGGGCGTGTT------TCGGTATTTC-----CGTAAGCCG----TTT--TTTTGTTCTGATACAATGCGTT-------TTACTT--ATC--AATTGAGAATGGATT-A--TGAAGGCAGAGGCTGCC---CC---TCCCAATTTTTTTCA-TCTCTTCGACGACATTC-A-T-CATAGCTGTTACTGCTCGCTAGTTCGACAACGTATCTCATTCTTTGAGCAAACCGGAACTACACCAGTTCCTATC--AGACTCTCAACGTTAATTTCACCTTAATCCCATGTAAACCCACCCCTTTCACTTAATTCCAGTAATCGAAAATATAGTAAACTTTACATTTCAATTGCTCGTGTCTTCTTGAATGGTCTCTCGCACAATTCCCTCGACCAT--GGAC--TAGTATTCTAAATTCACAGTTTGT
gi|4 : A-CTTACCATCTGAGAG----TCCTTCATC-TCTATGAATTA---CTTTA---------------TT--TTTTTGC--AAC-TCTCTTATATAC---C-AGTTTTTTACTC-GT-AGCCTTAA-----AGCATA--T--GTTTAACACCAT--ACA--TTATTT-CAATCTGAAA-TCTTACGTACAAAACCTC-AACT----------ATGTTACT---AATCTGACAAGT-ATTGATAACTACACATTAGCT------TTAAAGCTGCAA----------ACGTGTA-AACAATATTTT-GTCGTAAGA-AATTGAATTGT--TTAAGCAT--------------------AACC--CGTATATTC-CTGCTAC--ACCAC---------GATAATT--------A---TTTTT-AATTC----TTTTTGTTTTTGGCAATCTCAATTTAT-----GTCTTT--CCCAGGGATT-TTTATTCGAAT-ATA---TGCGTC------TC----TTTC-----C------CGA---TTG--TTTTGTTTTGG-ACA-TGCGCTG---GGGTTTCAT--ATA--AAT-GAGAATGGGTTCA--TG-AGGCATAGGCTGGC---CC---TCC-----TTTTTCATTCGCTTC----ACATCCGATT-CG-----------GCTCG----------------TTTTAGTTCTTGGGCAG--TGGGACT-CACCAGTT-CTATCTTAGA--CTCAAC-TT--TCTCACCTT-TTCCCTTCTGAG-CTAC-----------AA-TCCAGTAA-C-AGGta
gi|5 : TTCCAACT-TATTTCA-ATATTTACAC-CCTGCTAA-TTCAATTAGCACCATCTTGGTA-CTTTAAATCCATTTCCC--CCGGACTTCACTTATAGTAAACATAAA---CCCGCTA-GCCGGCTATTATGAAAAGCACT--ATAGGGTCC-TTCTTCCAATCTACAA---CGTATTCA-AGCGA-TTTGTGGAAAACTCACCATCTGAGGGAAAATCCTTCATC-TTTATGAATCA-G-C-TTA---------------CCTTTTTTTGCA-AAG-TCTCTTAT-TATTTACCAGTTTG--ACACTATGAGCCTGAA-----GGCA-AATC--GTTTAACACC-T--ACA--
gi|6 : agctttcttatagctcatacagctcggagcactttcgtgtgccttgattacagatttgttttcggatatttctgttccataattcatattttattagctattatgatctcctcgagtttatcactgacggactatagtatcctgtcagatacaatattccgcatcgtgttcataatacacgccgggatattttattaaatttgtgtctctccaAATC-CTATTTAT-----GCCTTT--CCCAGGGATT-TTTATTGGAAT-TTA---TGCGTC------TC----TTTC-----C------CGA---TTG--TTTTGTTCTGG-ACA-TGCGCTG---GGGTTTCAT--ATC--AAT-GAGAATGG-----------------------C---CC---TCC-----ATTTTCATTCGTTTC----ACACCCGA-TTCG-----------GCTCG----------------TTTTAATTCTTGGGCAA--TGGGATT-CACCAGTT-CTATCTTAGG--CTCAAC-TG--CCTCACCTT-TTCTCTTCTGAG-CTAC-----------AA-TCCAGTAA-CGAGGGGGAGGT---CCT----TTCCAATTGGCC-TGGGCTCTGAGGTGGTCCTC----CAATT-CCTCGACCGTGGGGACTTTAG-ATTCTAAATTCATGTTCT
gi|7 : TTTTATGGGCATAAACGTTTAAT-ATAGCATGGTCAAGCTTGCTAGCCAATTGATCGTCTCTA---------CA-T-----GAA----ATTGTGTCCA-CTAT-TTTCATATGTGTA-ACGCC-GC--AATTC---TAA-A-----TT--TATCTC-AAATCC------CGCCCGGACC----TTATAG-AAA---AAG----CCGCTACGC-GGCCAT-ATGA--GGCACTTCA---GGTCCTTT--TCCACACGATAATTTCG-ATTCATAGCAAGTCAGTGGCAA-CTT-CCATCTGAGAA----TCCTTCGTCGTTTATGAATCATACCTTTA---------------TC--TTTTTGCTAGACGTCTCTT
gi|8 : tttcgtgtttcgccaaacaACTTTCG-TGTCC-CGATACATTTTTA---GCATA----CTTAATTATA-CATGGTCAAGCTT--TAGACCATTGATCGTGTTCT---------AAAT-----GAA----ATTGTTTCCA-CT-A-TTTTA-AT-TTTA-AC-CC-GC--A-TTCT--TAACA-----TTG-TA-CT--AAATCC------C--CCGGACC---CTTAT
gi|9 : tgttgctttgttatgactcactactccggccgatcatgcccatacacctcggagcTTCCGATTCTTG----CCATAATCTATTTTTA---GCATA----CTTAATCATA-CATGGTCAAAATT--TAGACCATTGATCGTGTTCATAATAAGGGGAAT-----GAA----ATTGTTTCCA-CT-T-ATT-----------------GG--A-TTTA--TAACA-----TTG-TA-nnnnnnnnnnnnnnnnnnnnnnnnnggggga
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|14 ): TTTCATGAATTGAGATTACACTTGACCACTTGATTGAGAATTTTGGTGTTAGAT
Unaligned ( gi|16 ): CTGTCCCGAATCTACCTTTTTTTGCAAACACTTTTTATAC