lowQualScore : 22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 11111111111111111111111111111111111111111111111111111111111 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 1111111111111111111111111111111111111111111111
lowQualScore : 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 4 5555555555555 33333 11 33333 2 3 333 2222222222 2 2222222 33 22222 1111111 1 11 4444444444444444444444444444 22222222222222222222222222222222222222222222222222222222222 77777777777777777777777777777777777777777777777 2 2 33333333333333333333 444444444 1 1 1 2 2222 22222 1 11 1 1 1111111 1 2222 1 22 111 222 55555555555 2222 1111 22222 1 111 2222222222 444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 22222222 11 1 3333333 111111 11 111111 2222222222 555555555555555 2222222222222222222222222222222222222222222222 1 4444444444 1 1 111 222 1 22222 1 1 55555555 1 3333 2222 1 333 11 2 22 33333 1 3333333 3333333 222 2222 1 1 1 1 1 66666666666666666666 11111 1 333 2222222 11 33 2 4 1 1 22 3333 22 1 222 1 1 444444444444444 11 444444 11 1 111 1 1 1 1 11 4 3333 2 2222 33 11 4444 1 3333 2222 1 2222 222 555555555555555555 33 22 1 1 1 1 2222222 1 22222 1 1 2222 111 33333 2222 1 222 1 3 1 1 4 1 2 1 11 11 4 44 2222 11 3 222 44
lowQualScore : 3 55555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 0 4 9999999999999 3 22222 7 88 8 66666 5 0 2 111 9999999999 4 0 77 3333333 55 44444 3333333 6 8 8 99 2222222222222222222222222222 88888888888888888888888888888888888888888888888888888888888 77777777777777777777777777777777777777777777777 7 7 2 7 99999999999999999999 888888888 5 5 0 4 1111 33333 0 3 3 33 0 2 0 8888888 0 0000 0 3 88 777 222 22222222222 0000 7777 0 55555 0 3 000 0 7777777777 2 555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 22222222 88 0 3333333 999999 0 99 8 999 111111 8 7777777777 8 888888888888888 2222222222222222222222222222222222222222222222 3 2 0 4444444444 3 6 7 3 6 666 111 0 2 00000 3 3 7 4 00000000 3 0000 4444 0 3 6 666 44 3 00 6 33333 3 7777777 1111111 555 7 8888 3 7 3 2 3 3 88888888888888888888 00000 3 333 6 0 7777777 4 7 99 88 6 0 3 6 6 3 22 7 4444 0 55 3 999 3 7 3 000000000000000 6 6 88 666666 7 88 3 7 888 3 3 7 3 3 88 7 0 6666 6 5555 11 7 88 1111 3 6666 2222 3 2222 333 999999999999999999 77 00 3 3 3 3 3333333 3 6 00000 6 3 7 3 1111 6 222 3 11111 6 4444 6 3 7 6 555 3 7 1 3 6 3 0 3 3 3 88 88 0 22 2222 55 44 1 777 22
lowQualScore : . .................................................................................................................... . . ............. . ..... . .. . ..... . . . ... .......... . . .. ....... .. ..... ....... . . . .. ............................ ........................................................... ............................................... . . . . .................... ......... . . . . .... ..... . . . .. . . . ....... . .... . . .. ... ... ........... .... .... . ..... . . ... . .......... . ......................................................................................................... ........ .. . ....... ...... . .. . ... ...... . .......... . ............... .............................................. . . . .......... . . . . . ... ... . . ..... . . . . ........ . .... .... . . . ... .. . .. . ..... . ....... ....... ... . .... . . . . . . .................... ..... . ... . . ....... . . .. .. . . . . . . .. . .... . .. . ... . . . ............... . . .. ...... . .. . . ... . . . . . .. . . .... . .... .. . .. .... . .... .... . .... ... .................. .. .. . . . . ....... . . ..... . . . . .... . ... . ..... . .... . . . . ... . . . . . . . . . . .. .. . .. .... .. .. . ... ..
lowQualScore : 0 55555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 0 0 0000000000000 0 33333 3 00 0 00000 8 2 8 000 4444444444 0 8 00 0000000 00 00000 6666666 0 0 0 00 6666666666666666666666666666 22222222222222222222222222222222222222222222222222222222222 00000000000000000000000000000000000000000000000 5 5 5 0 00000000000000000000 222222222 5 0 0 0 7777 11111 0 2 2 88 0 2 0 8888888 0 0000 0 2 55 555 000 55555555555 2222 8888 8 00000 0 2 222 2 0000000000 5 000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 88888888 55 0 2222222 000000 8 00 0 666 000000 0 0000000000 0 222222222222222 4444444444444444444444444444444444444444444444 2 5 0 7777777777 3 7 3 3 7 777 000 5 5 77777 3 3 0 0 00000000 3 7777 0000 7 3 7 777 77 3 77 7 33333 3 7777777 0000000 777 3 3333 3 3 3 3 3 3 77777777777777777777 77777 3 777 7 7 7777777 0 3 00 33 7 0 3 7 7 3 77 3 3333 7 77 3 333 3 3 3 000000000000000 7 7 33 777777 3 33 3 3 777 3 3 3 3 3 33 3 0 3333 7 0000 77 3 33 3333 3 0000 7777 3 7777 333 333333333333333333 00 00 3 3 3 3 7777777 3 7 00000 7 3 3 3 7777 7 777 7 33333 7 0000 7 3 3 7 777 3 3 7 3 7 3 0 3 7 3 33 33 0 55 0000 55 00 7 888 22
consensus : AAATGCCANACATCAGTGGCAAACTNGACACAAGTGCATGCTCAATGCACNNTAA--GTATTAGATGACNNAACAATTTTTTTTTAACATCTTGTCATGCATATC-ATCATGTACGCACCAACCCNTAACCCATNGTATTTAAGAAGGCACCNAANAAAAA--AATGAGGGACTC-ATAAAT-GAAATTGGGG----TCAATAATCA-GGGATGCAGTG--CCGGATCTA---GA-----GGGGACAATACATTTNCCCC--T-TGTCACTAA-CCTC--AAAGCTTTCAAACACTT-A-T--AAAGAA--TGAATCTTTNTTCAAATGTTGT-CATTTT-AGG-ATCTT-CGACNCC----------------------------------------CCCCCCCCCCCCCCCCCC-AGTGTAGTTTTTCC------GTTCNTAC----ATNCAATTCAT-TGCAAA-AATAGGCTTTTGTTTTGAA-CATCAATCATTCTGAGT----TCTT-CAGTCTTGCTGTAATATCT-AAATTGATGAA--G-TATTTGTTAC--A--AAA-TAAATGA--ACAT-AGAT-AAAT--TCTAATTGTT-GA-G--TTTAAA-AAATCTT-TGAC---CAACATT-GTA----TTAT-TGGCT--AACT--G-AAACTTTG-----CA-TTCTTTT-ACAA-T-CT--T--GCAGTC-A---TT--GAA--TATAGTGCA-TGTGTNTGTGCT-----C-T-GTG----CA--GGTAA--TA-TTT-CCAAAAG---AGA----TCA--AA--------AACCCTGCAA--AT--A-TGTAATTGTT-GTACA----AAG----T-TTTATA--AGT-ACTACA-AATT-GCCC-CT-A---A--TGA-TTT-TA-T---GA---C-AAAATACTTTAGATAT-T--GCG-----------------CATAG-----------CAA-AAAATATGTAAAAGTCGATCTGAT-CATAATT-T-T--AT--CACCAT-ACTATGTTGTACA-TAATGATTT-C-GTTAA-TGCAACAGGCCTGATGCAT-GCCGTACACT-ATAAG-ACACATTNTAT-------CACATCCAG-CTC---TTGTACAAAATTCAGGTT-CATTAC-ACACG--ACATTTACTTTAT-TTTCCACAGACATCA-----GAAGT-AT-GT-AA-TAGGA-GTTAT-CGT--ATACGTTACGTACC----TAG-ATCTTAT-ACACATATAA-GT-ACC-CTCTCCCCCCC-CA-CCC-CCCCCTTT-TTTTTTTTAAA-CCAAAT---ACATTTTTTT--GA---ATCCCGNTCATCTCAAA-CTTACGG-CAGAAACTGGCCCCGCAAAGCGACTT-AATGAAGGTGAATGG-GGGGAAA-CTATGTCATT-GT-TTCATTA-CTTACGTTTC-ATTTAGGTT--AGG-GTGCGTGTG-TGTGT-TGTGTGTG----GGGGGGGGGGGGTGGTATGTGC--ATAAGACGTGCT-ATTCTCA--GTC-AGAAACTTATGCA-G-TACTATTATCT-AA-TACACA-CTGT-CAC--AGTTAAA-TTACA-N--TCAT-TTGATTGGAT-AAAACAAAC--TTACATTTGAA--ACG---NTCGATCT-GTTT-T--CTCTCGTTGT--A-TA-TTGCAACTGC-A--ACGGGG---CTACGGCTAT--CGG-GCGCAGC---AAACAATTA--TTTTCTGTGAC-TTTTG-TT-CTG-AAA-TGGGGTA-ATCATTC-ACTCCC--TACTAGCCTTT-CTGGATA-CCGT--G-TGTCGCTGTTACA-TTNCCCCATG--GCGCAG-G-TTTCTC-ACAATTTTTCAAGCGAATTCAAAGCATTTCG--TTT-AAAACATCTGCA-TCT-AACACCTCCACCATG-TGCA-CCATCGGTG-TTTTG-ACGG-AG--GTCATGG--CGGACAA-TTCTCCCGCGATTCC-TGACTTGGCNNTGCGA-AGATGGTA-ACTCC-NCCTCCCCTGACGAC-GTGGAAGG
Reference ( gi|2 ) : AAATGCCAAA-ATCAGT--TAA--TGGACA-AAG--CA-GC---A--CATTTTAACAGTA--AGAT-ACAAA-CAACTTTTTTT--ACA---------ATA-ATCAGTCATTTAT-CAGCAAACTATAACC-ATTGTATTTAAGAAGGCAATAAAAAAAAACCAATGAGGGACTC-ATAAAT-GAAATTGGA-----TCAATTATCAAGGGATGCGGTG--GCGGATCTA---GA-----GGG-ACAATACATTTTCCCC--T-T--CACTA--CCTC--A--GCTTTCAAACA-TT-A-T--AAA--A--TGAATCTTTCTTCT--TGTTGTTCATTTT-AGGCATCTT-CGACCCC----------------------------------------CCCCCCCCCCCCCCCCCCAAGT------TTTCC------GTTTTTAT----ATACAATTCATCTGCAAAGAATAGGCTTTTGTTTTGAA-CATCAAT--TTCTGAGT----TCTTCCAGTCTTGCTCTAATATCT-AAATTTATGAA--G-TATTTGTTAC--A--AAA-TAAATGA--ACAT-AAAT-AAAT--TCTAATTGTT-GA-G--TTTAAA-AAATCTTCTGAC---CAACATTTGTA----CTAT-TGGCT--AACT--G-AAACTTTG-----CA-TTCTTTT-ACAA-T-CT--T--GCAGTC-A---TT--GAA--TATAGTGCATTGTGTTTGTGCT-----C-T-G-G----CA--GGTAA--TA-TTT-CCAAAAG---AGA----TCA--AA--------AACCCTGCAA--AT--A-TGTAATTGTT-GTA-A----AAG----T-TTTATA--AGT-ACTACA-AATT-GCCC-CT-A---A--TGA-TTT-TA-T---GA---C-ATAATACTTTAGATAC-T--GCG-----------------CATAG-----------CAA-AAAATATGTAAAAGTCGATCTGAT-CATAATT-T-T--AT--CACCAT-ACTATGTTGTACA-TAATGATTT-C-GTT-A-TGCATCAGGCCTGATGCAT-GCCATACACT-ATAAG-ACAAATTTTAT-------CACATCCAG-CTC---TTGTACAAAATTCAGATT-CATTGC-ACACGCCACATTTAGTTTAT-TTTCCACAGACATCA-----GAAGT-AT-GT-AATTAGGAGGTTATCCGT--ATACGTTACGTACC----TAG-ATCTTAT-ACATATATAA-GT-ACCTCTCTCTCTCTC-TACCCC-CCCCCTTTTTTTTTTTTAAA-CCAAAT--AACACTTTTTT--GA---ATCCCGTTCATCTCAAAACTTACAGCCAGAAAC-GGCCCCGC-AAGCGACTT-AATGAAGGTGAATGG-GGGGAAATCTATGTCATT-GTTTTCATCA-TTTACGTTTC-ATTTAGGTTGAAGG-GTGCGTGTG-TGTGTGTGTGTGTG---GGGGGGGGGGGGGTGGTATGTGC--ATAAGAC--GCTCATTCTCA--GTC-AGAAACTTATGCATG-TACTATTATCT-AA-TACACA-CTGT-CAC--AGTTAAATTTACA-T--TCAT-TTGATTGAAT-AAAACAAAC--TTACATTTGAA--ACG---ATCGATCT-GTTT-T--CTCTCGTTGT--A-TA-TTGCAACTGC-A--ATGGGG---CTACAGCTATTACAGCGCACAGCA--AAACAATTA-TTTTTCTGTGAC-TTTTG-TT-CTG-AAA-TGGGGTA-ATCATTC-ACTCCC--TACTAGCCTTT-CTGGATA-CCGT--G-TGTCACTGTTACATTTCCCCCATG--GCGCAG-G-TTTCTC-ACAATTTTTCAAGCGAATTCAAAGCATTTCG--TTT-AAAACATCTGCACTCT-AACACCTCCACCATG-TGCAGCCATCGGTG-TTTTGAACGG-AG--GTCATGG--CGGACAACTTCTCCCGCGATTTCGTGA-TT-GCGTTGCGG-AGATGGTACACTCC-CACTCCCCTGACGACTATGGAAGGT
gi|3 : AAATGCCAAA-ATCA-T--TAAACTCGACA-AAA--CA-GC---ATGCACATTAA--GTA--AG-T-ACAAAACAATTTTTTTT--A-A---------ACATATC---CATATATGCACCA---CATAACCCATAGTATT--AGA--GCA-TAAAAAA----CAATGAGGGA-TC-ATAAAT-GAAATTGGG-----TCAAT-AGCAAGGGGAGCACTG--CTGGATCTA---GAG----GGG-ACAATACA-TTTCCCC--T-T--CACTC--ACTC--A--GC-TTCAAACA-TT-A-TA-AAA--A--TGAATC-TTCTT-T--TGTTG-TCATTTT-AGG-AT----------------------------------------------------CCCCCCCCCCCCCCCCCAAGT------TTTCC------GTTTATATACAAATACAATTCAT-TGCAAA-AATAGGC-TTTG--TTGAACCATCA----TTCTGAGTCTCATCTT--AGTCTTGCTCTAATATC
gi|7 : actcttccacgctccgccactggatggcaacgtcacacgcgtgtttacagactcgtcaacttgcatgtaaacaacatggcgcgcgatgtccgctcttgcaccgggtatcatgttaagtcgccttcgtttgaaccacgaaattttacagaaaagttgtccaaaggatctgacacccttctgagaaagttacgttcacaaaatttcactgagtaaaatcgcagaaacacaattgtaaaacgtgtgcaactagatgctttcgtagcatgaattgcattgttattacagtggcagaaatggtgtagaacaaattgtcccaatattttaacagagagctactgttctgaggctagtgcacagatgggtaaacacggtgcaattattgagtttaaattgttttgttaaggaatttaaaatggttgtttagttaaaaactgaataaaaaataggctatatttgcgcgttttaccgttcttttaatttttataaatgtttcatctgcttttaactaaaatcaccatcttccaaatgtgaaactatcaattgtttaagattttaaggacaagtatcccccttttccccccaggctaccctaatccaatatatttctataaatacacccgtccacacaaatccaacggatggggggggggggggggggggggggggggccgtaatgtacattatgatacataattcatttatttataaacacgtattaaaaatacagtagccaattaaagatagcattcctgtggggtcaatggaactgaatctaactcaaagacaagatacattaagtcatacggcaaagaatatttatcatcaaaattgatcaatgccacaagtgttgaaatataaaactttttgaattccaaataatgttctgctgcctcatcagtgttaaaataattggcaaattcttttgtcatgtccctccttctttacatacttgggaacttgcaacagatacaaacttccaacaaagtacatgttgcagttcaattggtaatatcaaatcagccttcataagtgggtatttttttccattgtaagtagaatattgtttttggtacaaagggatagctttgttgatagggttgatctaataactggagttgatgatgattcagtctgaggtatgctctgttgatgaagagtgtggtttttgactaaaaaatgctgctgtaccaagtattctcaaatgaattgtaaacaaagacagaatattttttaatactgtgcaATGCCACACAT-AGTGGCAA--TGGACACAAGTGCATGCTCAA--CACTATAA--GTATTAGATGACTTA--AATTTTTTTTTAACATCTTGTCATGTA-AT--ATTATGTAC-CA-CAACCCCTAACCCATTGTATTTA-GAAG-CACCTAACAAAAATGAA--GGGGACTCGATAAATAGAAATTCGACGGGTTTAATGATCA-GGGATGCATTTTCGTGGATCTATTAGACTTCTGGG-ACAATACATT--CCCCAGT-T--CACTAACCCTCTTA--TCCTTCAA-CA-TTTA-TTAAAA--A--TGGATCTTCCTTCA--T-TTGT-CATTTTTAGG-ATTTT-TGACCCC----------------------------------------CCCCCCCACCCCACCCC
gi|4 : AAAAA--AATGAGGGACTC-ATAAAT-GAAATTGGA-----TCAAT-ATCA-GGGATGCGGTG--CTGGATCTA---GA-----GGGGACAATACATTTTCCCC--TCT--CACTAA-CCTC--A--GCTTTCAA-CA-TT-AGT--AAA--AATCGAATCTTT-TTCT--GTTTGT-CATTT--AGGCATCTTTCGACCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCGT------TTCCCCCCCCCATTTGTA------TACAATTCATCTGCAAAGAATAG--CTTTGTTTTGAA-CATCAAT--TTCTGAGT----TCTTCCAGTCTTGCT-TAATATCT-AAATTGATGAA--G-TATTTGTTAC--A--AAA-TAAATGA--ACAT-AAAT-AAAT--TCTAATTGTT-GA-GTTTTTAAA-AAATCTT-TGAC---CAACATTTGTA----TCGTATGGCT--AACT--GCAAACTTTG-----CA-TTC-TTT-ACAA-T-CTTCT--GCAGTCAA---TT--GAAATTATAGTGCA-TGTGTTTGTGCT-----CGT-G-G----CA--GGTAA---A-TTGACCAAAAAGC-AGA----TCA--AA--------GACCCTGCAA--AT--AGTGTAA-TGTT-GTACA----AAG----TCTTTATAC-AGTAACTACA-AATT-GCCC-CT-A---AC-TGACTTT-TACT---GA-----AC-ATACTTTAGATATAT--GCG-----------------CATAG-----------CAA-AAAA-ATGTAAAAGTCGATCTGATCCATAATTAA-T--AT--CACCATAACTATGTTGTACATTAATGATTTGC-GTT-AGTGCAACAGGCCTGATGCATCGCCATACACTAATAAG-ACAATTTCTAT-------CACATCCAG-CTC---TTGTACAAAATTCAG-TT-CATTGCAACAC-CCAC-TTTACTTTA--TTTCCACAGACATCA-----GAAGT-ATCGTCAATTAGGA-GTTAATCGT--ATACGTTACGTACC----TAGAATCTTAT-ACATATATAA-GT-ACCTCTCTCTCCTTCTTACCCCTCCCCCTTTGTTTTTTTTAAACCCAAAT---ACACTTTTTTGGGA---ATCCCGTTCATCTC-AAACTTACG--CAGAAACTGGCCCCGCAAAGCGACTGAAATGAA--TGAATGGTGGGGAAATCTATGTCATTCGTGTTCATCATTTTACGTTGCAATTTAGGTTGAAGGTGTGCGTGTT-TGTGT-TGTGTGTG---TGGGGGGGGGGGGTGGTATGTGCATATAGGAC--GTCTA-TCTCA--GTCAAGAAACTTATGCATG-TACTATTATCT-AATTACACAGCTGT-CAC--AGTTAAA-TTACATT--TCATCTTGATTTGATAAAAACAAACTATCACATTTGAA--ACGGTCATCGATCTCGTTTCT--CTCTCGTTGT--AGTA-TTGCAACTGCAA--ATGGGGCGCCTACAGCTATTACA--GCACAGC---AAACAATTA--TTTTCTGTGACTTTTTG-TTCCTGAAAA-TGGGGTATATCA-TC-ACTCCCTTTACTAGCCTTTCCTGGATA-CCGTTCG-TGTCA-TGTTACAGTTTCCCCATG--GCGCAGCGTTTTCTCAACAATTTTCAAAGCGAATTCAAAGCATTTCAGTTTT-AAAACATCTGCA--CT-AACACCTCCACCATGTTGCA-CCATCGGTG-TTTTGAACGG-AGGCGTCATGGGCCGGACAA-TTCTCCCGCGACTTC-TGACTT-GCGTTGCGGAAGATGGTAACCTCCTCACTCCCCTGACGAC-ATGGAGGtgccccaaccgcccattcccccccctccctcccagtgaatagttttcccgttctttgatatatataatctcctcaaattgcaaaaatcttaaattaatgaacagtatttgttaccaaaaactaaagaccacattagattaagtggttttattgttgagtttaaaggaatcttgaccatcaacataggtaattcctttcttcaacttgaaaactttgtcgattactctcttaataagtcatccgcagtcaatgtttagaactatgtgcaatagatgtatgctagctcctgggtgtcaggggtaaatcacttttcaaaaacgcagattcctcattaatttaccacaacctgcaatgatatgtacttgttggtaactccaagctttttttataggagtacaacacaattagcccactaaacagatttctatccggaaaccaaaatactttagttatttaggtatagtaaa
gi|5 : gcatttgGAGGGGCT--ATAGAT-TAAATTGGGG----CCAATAATCA-GTGATGCAGTG---CTGATGTA---AA-----GGGGACAATAAATCTAGAAC--T-TGTCACCAA-CCTC--AAAGCTC---AACACTT-A-T--AAAGAA--TGA-----TATTCAAATGTTGT-CATTT--ATG-ATCTT-CGACACC----------------------------------------CCTCCCCCCC---------AGTGTAGTTTTTCC------GTTCT-AC----ATT---TTTAT-TGCAAA-AATAGGCTT--GTT---AA-C--CAATCATTCTGAAT-----CT--CAGTCT-GCTGTAATATCT-AAATT--TGAA--GCTATTTGTTAC--AAGAAA-T-AATGA--ACAT-AGAT-ACAT--T---ATTATT-GATC--TTTCTA-AAATCTT-TGAC---CAACA---GTG----TGAT-TGGCT---ACT--G-AAACGATT-----CAGTTCTT-----AACT-CT--T--GCAGTC-A---T-----------------TTGTGTGTATGCT-------T-GTG----CA--GGTAA--TA-------GAATG---ATA----T-----------------CCTGCAA--ATACA-TGTA--TGTG-AT--A----AAG----C-TT------AGT-ACCAT--AATT-G-AC-CT-AAAGA--TGA-TTT-TAGT---GA---CAAAAATGTTTTAGATA--T--GCGTTAAGTGAAATTGTTTTTATAGATCATGAAGGGCAAAAAAATATATGAAGTCCGATCTGAT-CATAATC-T-TAAATTACACCAC-A--ATG-TGTATA-TAAT--TTT-CTGTTAA-TGCAATAAGTCTGAT---T-G-CGTTCACA-GTAAG-ACACATTGTATACACATGCACATCCAGCCTCAGATTGTACAAGATTTAGGTTGCATAAC-A-ACG--ACA-TTATTTTATATCACCA-AGGCACCAACCAGAAAGTGAT-GT-CA-TAGGAGG-TAT-CGTAAATACGTT---TACTAGAGTAG-A--TTATAAAACACATAATGTAACC-----CCCTCCC-CAGCCC-TCCC-----TTTTTTTTCAA-CCAAAT--CA-ATTTTTTT--GGACCATCTCGGTCATCTCAAACTTTACAG-CAGAAACTGGCATGGCAAAGCGACGT-AATGAAGGTGAATGG-TGGTAA--TTGTTTCATT--TTTAAAATA-CTTACTTTTC-ATGTGGGT----GG-GTGCG-GTG-TGT---------------CGGGAGGGTGGGTGGTAT-TGC--ATAAGACGTGCT-ATTCTCAAGATT-AGAA--CTAAGCAGGTTACTATTAAGTAAA-TAC-CA-CTGT-CAC--AG-TAAA-TTACA-A--TCACATTGATTG-AT-AAAACAAAC--TTACATTTGAATGACG---TGTGATCT-GTTT-TA-TTCTCATTGA--A-TA-TTGTAACTGC-AGCACGGGG---CCCCGGCAAT---GGGGCTCAGCAGTAAGCAATTA--TTTTCTGTGA---TTTGCTT-CTG-CAATTGGGGTA-ATC-TTC-A--CCC--TA-TA-TCTTT-C-GGGTACCCGT--GTTGTCACTGCTA---TTCCCCC-TGCTG-GCAG-G---TCTT-ACAA--GTTCAAGCGAATCCACA--ATCTCG---TT-AAGACATCTGCA-TCT-AACA--TCCACCATG-TGCA-CAATAGGTGTTTTTG--CGGAAG--GTCATGG--CGGACAA-TTTTCCCGCGATTt
gi|1 : ggttgatctacataactggagttatgatcgattcgtatgctctgttgatgacgagtgtgatctctttagctaaaaaattctgctgtaccaagtatatccaaatgaatcgtaaaaaaaaaaccgacaagaatatttttttaatatgtcaaatgccaaatcaatacagcaatatatcttttaaaaatagcacatattacctaaaactaacccgtgttatctaaatgaGAGGGGCT--ATAGAT-TAAATTGGGG----CCAATAATCA-GTGATGCAGTG---CTGATGTA---AA-----GGGGACAATAAATCTAGAAC--T-TGTCACCAA-CCTC--AAAGCTC---AACACTT-A-T--AAAGAA--TGA-----TATTCAAATGTTGT-CATTT--ATG-ATCTT-CGACACC----------------------------------------CCTCCCCCCC---------AGTGTAGTTTTTCC------GTTCT-AC----ATT---TTTAT-TGCAAA-AATAGGCTT--GTT---AA-C--CAATCATTCTGAAT-----CT--CAGTCT-GCTGTAATATCT-AAAT
gi|7 : actcttccacgctccgccctgatggcataacagtcatcacgtgttacaagactccgtcaacttacatgtaaacaacatgggtgcatgtcatgcttgcaccgtacatattgtaaatcgcctcgttttgacgacgaattgttcacagaaaagttgtcaaggatctgacacagcttgcagagaaagttacgttcactaaaatttatgagtcaataacgcagaacagcacttgtaaacgggtgctactcatagtctcgatgctttcgtaacatggatgcatgtattatgtgtacagatatggctgcagaaaaactgtcccgatatttttacagagagctacatgctgcagctagctgcatcagatggtaaactacgggaaattaaacgagtttaattttttgtgaggaatttaaaaatgttgttttagttaaaaaacttaataaaatagccctaaaacgtctgcgtttacccgttcccattttataagatgttttcatctgctgtctgcatatttatattgtatttttcagcctaactaatagccacttccacaaatattgaactacattgggatatattaaaaattggttgcttaaagatttatatagtggcattgcatatgtatcccccttttttccaggtctatctccctaatccaatatatatgctaataaaatacacggacggttcgggtggtaacacccgtcacaggcaatcacagaagggaaaaaaactcgtaacgtaattaattatagtaatagttcatttatttgtaaatgccatattgaacacagtaaacttatattttcagccagtttaaagataacatccatgggtcagcaatggaatggaacacacaaacaacatacaagtcaataaggcagataatctttatatcaaagttgatcaatgcatagtgcgattgaaattaaaattcttgtattccaaataattgtattgccctgatcatgttgagaataatgcaattcttttgtcatgtcctccttcttttacgtacttgggaaacttgcacaatcaaatctccaagcaaagtacatgtttgcaaggttaattgtaaaatatatcaaaacacgccttggtattcttttctattgtaaagagaattgttttctgctaaaaaggggaagcttgtgatactgggttgatctacataactggagttatgatcgattcgtatgctctgttgatgacgagtgtgatctctttagctaaaaaattctgctgtaccaagtatatccaaatgaatcgtaaaaaaaaaaccgacaagaatatttttttaatatgtcaaatgccaaatcaatacagcaatatatcttttaaaaatagcacatattacctaaaactaacccgtgttatctaaatgaAAAATCTTAAATTAATGAACAG-TATTTGTTACCAA--AAACTAAA-GACCACATTAGATTAAGTGGTTTTATTGTT-GA-G--TTTAAAGGAATCT--TGACCATCAACATAGGTAATTCCT-T-T--CTTCAACTTGA-AAACTTTGTCGATTA-CTCTCTTAATAAGT-CA--TCCGCAGTC-AATGTTTAGAAC-TAT-GTGCAATAGATGTATGCTAGCTCC-T-G-GGTGTCAGGGGTAAATCACTTT-TCAAAAACGCAGATTCCTCATTAATTTACCACAA-CCTGCAATGAT--A-TGTACTTGTTGGTA-ACTCCAAGCTTTT-TTTATAGGAGT-ACAACACAATTAGCCCACT-A---AACAGA-TTTCTA-TCCGGAAACC-AAAATACTTTAGTTAT-TTAG-G-----------------TATAG-----------TAA-A
gi|6 : atgccacacatagtggcaatggacacaagtgcatgctcaacactataagtattagatgacttaaatttttttttaacatcttgtcatgtaatattatgtaccacaacccctaacccattgtatttagaagcacctaacaaaaatgaaggggactcgataaatagaaattcgacgggtttaatgatcagggatgcattttcgtggatctattagacttctgggacaatacattccccagttcactaaccctcttatccttcaacatttattaaaaatggatcttccttcatttgtcatttttaggatttttgacccccccccccaccccacccctgccccaaccgcccattcccccccctccctcccagtgaatagttttcccgttctttgatatatataatctcctcaaattgca--AAA-TAAATGA--ACAT-AGAT-AAAT--TCCA-TTGTTTGA-G--TTTAAA-AA-TCTTTTGAC---CAACATT-GTA-----TAT---GCT--A-CT--G-AAAACTTG-----CA-TTCTTTT-ACAA-TTCT--T--GCA-TC-A---TT--GA-----CAGT--------TTTGTGCT-----C-TTGTG----CA--GGTAA--TA-TTT-C-AACAG---AGA----TCA--CA--------AACCCTGCAA---T--A-TGTAATTGTT-GTCCA----AAG----T-TTTATA--AGT-ACTACA------------T-A---A--T---TTT-TAAT---GA-----A-AATACTTTAGATA--T--GC------------------CATAG-----------CCA-AAAATATGTAAAAGTCGATCTGAT-CATAATT-TAA--AT--CACCAT-ACTATGTTGTACA-ATATGATTT-C-TTTAA-TGCTACAGGCCTGATGCAT-GC--TACACT-AAAAGCCCACATTTTAT--------ACATCCAG-CTC----TGTACAAAATTCAGA-T-CATTAC-ACACG--ACATTTA-TTTAT-TTTCCACAGACATCA-----GAAGT-AT-G--AA-TAGGA-GTTAT-CGT---TACGACACGTAGC----TAG-ATCTTAT-ACA-ATATAA-GT-ACC-CTCT---------------CCCCCTTTTTTTTTTAAAAA-CCAAATACAACATTTTTTG--GA---ATCCCCCGCATCTCAAA--CTACAG-CAGAACT-GGCCCCGCAAAGCGACTT-AATGAAGGT-AATGT-GGGGAAA-CTAAGTC-TT-G--TTCATTA--TTACGTTTC-ATTTAGGTT--AAG-GTGCGTGTGTTGTGTGTGTGTGTGTGTGGGGGGGGGGGGGT--TATGTGC--ATAAGACGTGCT-ATTCTCA--GTC-AGAAACTTATGCA-G-TACTAATTTCT-AA-TACACA-CTGTCCACAAAGTTAAA-TTACA-CTATCAT-TTGATTGATA-AAAACAAACG-TTACA-TTGAA--ACGT--GTCGATCT-GTTT-TTCCTCTCGCTTTAAA-TACTTGCAACTGC-A--ATGGGG---CTACAGCT----CAGCACGT------AAACAATTATTTTTTCTGTGAC-TTTTG-TT-CTG-AAA-TGGGGT---TAATTCAACTCCT--CCCTAGCCTTT-CTGGATA-CCGT--G-TGTAGCTGTTACATTTACCCCA----GCGCAG-G-TTT-TC-CCAATTTTTCAAGCGAATTCAAAGCATTTCG--TTTAAAAACA-CTGCAATCTAAACACCTCCACCATG-TGCA-CCATCGGTG-TTTTG-ACGG-AG--GTCATGG--CGGAGAA-TTCTCCCGCGATTC--TGA-TTGGCTGTGCGA-AGATGGTA-ACTCC-C-CTCCCCTGACGAC-GTGGGAAG
gi|23 : ac-A----AAG----T-TTTATA--AGT-ACTAAA-AATT-GCCC-CTAA---A--CGA-TTT-TA-T---GA---A-AAAATACTTTAGAT-------------------------------------------------ATATGTAAAAGTCGATCT-AT-Ccgtg
gi|4 : -A-TGCATCAGGCCTGTTGCA
gi|26 : gcatttgaaaaaaatgagggactcataaatgaaattggatcaatatcagggatgcggtgctggatctagaggggacaatacattttcccctctcactaacctcagctttcaacattagtaaaaatcgaatctttttctgtttgtcatttaggcatctttcgaccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccgtttcccccccccatttgtatacaattcatctgcaaagaatagctttgttttgaacatcaatttctgagttcttccagtcttgcttaatatctaaattgatgaagtatttgttacaaaataaatgaacataaataaattctaattgttgagtttttaaaaaatctttgaccaacatttgtatcgtatggctaactgcaaactttgcattctttacaatcttctgcagtcaattgaaattatagtgcatgtgtttgtgctcgtggcaggtaaattgaccaaaaagcagatcaaagaccctgcaaatagtgtaatgttgtacaaagtctttatacagtaactacaaattgcccctaactgacttttactgaacatactttagatatatgcgcatagcaaaaaaatgtaaaagtcgatctgatccataattaatatcaccataactatgttgtacattaatgatttgcgttagTGCGA-AGATGGTA-ACTCC-ACCTTCCCTGACGAC-GTGGAAGcgccatacactaataagacaatttctatcacatccagctcttgtacaaaattcagttcattgcaacacccactttactttatttccacagacatcagaagtatcgtcaattaggagttaatcgtatacgttacgtacctagaatcttatacatatataagtacctctctctccttcttacccctccccctttgttttttttaaacccaaatacacttttttgggaatcccgttcatctcaaacttacgcagaaactggccccgcaaagcgactgaaatgaatgaatggtggggaaatctatgtcattcgtgttcatcattttacgttgcaatttaggttgaaggtgtgcgtgtttgtgttgtgtgtgtggggggggggggtggtatgtgcatataggacgtctatctcagtcaagaaacttatgcatgtactattatctaattacacagctgtcacagttaaattacatttcatcttgatttgataaaaacaaactatcacatttgaaacggtcatcgatctcgtttctctctcgttgtagtattgcaactgcaaatggggcgcctacagctattacagcacagcaaacaattattttctgtgactttttgttcctgaaaatggggtatatcatcactccctttactagcctttcctggataccgttcgtgtcatgttacagtttccccatggcgcagcgttttctcaacaattttcaaagcgaattcaaagcatttcagttttaaaacatctgcactaacacctccaccatgttgcaccatcggtgttttgaacggaggcgtcatgggccggacaattctcccgcgacttctgacttgcgttgcggaagatggtaacctcctcactcccctgacgacatggaggt
gi|27 : attggctgACTCC-ACCTCCCCTGACGAC-GTGGAAGcat
18 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|8 ): ATCGTTAATCGCTCGTATTTTTACCTGCGGATATATTTCACAGACAATCAGTTTGTCAAAAGACTCTAGACCCAACTTGCTCGCCAGAAAAGTTACTGTCTAGTTCAACAAATTTCACTCGCTAGTAAACGCAGAAGTAGCAACGAAATTGTGAAACCTTGCGTGCACTAGATGCTTTCGTTAGCATGATGTTACATTGGCATGTTATTTGTGCAGAAATGTTGTAGAACAAATTGTCCAATATTCATTCAGAGCAGCAACAATTCTTGCAGCTAGTGCCCAGATGCGATACCAACATTGTATTTCATTTTGTTATTTGGGATTTTA
Unaligned ( gi|9 ): CTCTTCTCACCGCTCCGCCTACTGATGGCAACGTCACATTCGCGTGTTACAGATCCTCAAGCTTGCATTAAACAACATGGCGGCGATGTCGATCTTGCACGGGTATCATGTAATCGCCTCGTTTGGCACGAATTCTTCACAGAAAGTTTGTCAAATAGGATCTGCACATTACTTCATGAGAAAGTTACCGTTTCAAAAAGTGTTCTACTGAGAAAAAGAACGCATGAAACAGCAATTGTAATCAACTGGCCACTGGGATGCTTTCCGTAGCCTGAATGCCATGTTATTACCAGTGTGCATGAAATGG
Unaligned ( gi|10 ): TTTTTAACAGCAAAGTTTGTCAAAGGATCTGACACGTTCAGAGAAAGTTGCGTTCACAAAATATTTCAATGAGTGAAAAACGCAGAAAACAGTTTAAACGTGTGCACTAGGATGCTTTCGTAGCAATGATTATATTATTGTGTGCAACGAGATGGCTGGCAGAACAATATTGTCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTCACAGAAATGGGTAAACTACGGACACCAATTTCGAGTTTATTGTTT
Unaligned ( gi|11 ): CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCGCCCCCCCCCCCCCCCCCCCCCCCCCCCCCACCCCCCCCCCCCCCCCCCCCCCCCCCCCAATGAAAATATGTATTAAAAGTTATGAAATTCATTCTTATCACAGTTTATTTCTAAAATAGTGAATTTCAGAACAAAAAGTCTGCACTAAATGAACAATATTATATAAATTTTGATAAATTTATAACTCTAGCATTGAAACTATTTGTAACA
Unaligned ( gi|12 ): TCACTCTTCCACGCTCCGCCCACTGATGGCAACGTCACACACGTGTTTACAGACTCCGTCAACTTACATGTAAACAACATGGCGAGCGATGTCGATCTTGCACCGGGTATATTGTTAATCGTCCCGTTTGACAACGAATTTTCACAGAAAAGTTTGTCAAATGATCTGACATACTTCAGAGAAAGTTACTTACGTTCACAAAATTTCACTGACTAAAA
Unaligned ( gi|13 ): CCCCACCCCCCCCCCCCCCCCCCCCCCCCCCCCCTCCCCCCCCCCCCCCCCCCCCCCCCCCCCTTTTCACCTACATATTTATAGTACATGTATTGATAACATGAAAGGTATATTATTGCAATTGATATCACAATATTTACGTATTCTAATAACAACCTTGACCTTATTGACTTAGAAATTGATGCGTAGCATCATATCT
Unaligned ( gi|14 ): CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCACGCCCCCCCCCCCCCTTTAATTTGTGCCAACTTCTTAAAAGTATACTTTTATCATACTTGCATATCATTTTTTATTTTAACATTTCAATATAAATTCATCAATCTTTATTTCATAATTAAT
Unaligned ( gi|15 ): CATGTTTTTCATAATAAACTCGAATCGCATATAAACAGAGAGAGAGGGGGGGGGGGGGGGGGGGGGGGTTGGACCTATCGGTAATAGTGTACAGTTCTATTATGAACATTAGAGAACATTTTCAAAATCAAATATTAA
Unaligned ( gi|16 ): CCCCCGCCACCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCTTAAGTATTTCACAATACACATTCACACCGAATAAATATATCTGTATTGACAAAGTTCGTTGATATCACGGAGAAATAT
Unaligned ( gi|17 ): ACTCTTTCCACGCTCCGCCCACTGATGGCAACGTCAGCACGCGTGTTTACAGACTCCGTCAACTTTACACTGTAAAACAACATGGCGATCATGTCGAATCTTGCACGGGTCATC
Unaligned ( gi|18 ): ACTCTTCCACGCTCCGCCCACTGATGGCAACGTCACTCACGTGTTTACAGACTTCGTCAGCTTACATGTAATTAACATGGCGAACGATGTCAATCGTGCATCGGGTACC
Unaligned ( gi|19 ): TTGGTATAAGTTTTTTCTATTGTAAATAGATATATTGTTTTTGCTGGTAAAAGGAATATCTTGTTGATAGGTTGGATCTATTATAAACTGG
Unaligned ( gi|20 ): GATTTAAAAATGTTTAGTTAAAAAATCCTGAATAAAATAGGTATATATTTGCTGCGTTACCGTTCCACTTATAAATGTTTCATTGCTTTC
Unaligned ( gi|21 ): CCCCCCCCCCCCCCCCCCCCCCTCAGCTAAATTCACCCAGATCTGTGGTTATAATTGGTAAGAAAAGTTTAGTGGATATCTCAATA
Unaligned ( gi|22 ): CCCCCCCCCCCCCCCCCCCTTTTTACCCTCAGCGGGATATTTTTTTATTGACATTGTATTAGATAAATTTTGGAAGGTAT
Unaligned ( gi|24 ): CACTCTTCCACGCTCCGCCCACTGGAGGCAACGTCACACACGATGTTTACAGACTCCGTACAACTTACATG
Unaligned ( gi|25 ): ATTCACTCTTCCACGCTCCGCCCACTCCGTCAACTTACATGTAAACAACATGG
Unaligned ( gi|28 ): TTGGCTGTGCGAAGATGGTAACTCCACCTT
Alignments
lowQualScore : 11111111111111111111111
lowQualScore : 2 4444444 1 66666666666666 11 3333333 11 00000000000000000000000 22 11 111 111 222 11 11 1111 1 111 111111 22 11 1 11 2222 111111 55555555555555555555555555 4444444444444444444444444444 11111 1 22222222222 1 1 111111111 111 222 11 22222222222 1 1 11 1 11 11 11 11 11 111 11111 11111111 1111 1111 22222 1 11111 111 55555555555555555555 11 2222 11 22222222222 222 1111 333333333333333 111 11 11 222222 111111 11 222 44444444444444444444444444 111 5555555555555555 1111 1 22222 1 1 1 1 1 11 1 1 33333333 1 111 11 1 111 1 1 1 22222 1 1 11 111 1 1 1 111 2222 1 22 1 2 1 111111111 11 1 22 1 111 11 111 1 11 1 1 1 1 22 1111 1 22 1 333 1 1 33333 1 1 11 11 1 2222 2 1 1 11 1 222 2 11 2 22 11 2222 1 2222 1111 1 1111 111 4444444 1111 1 11 1 11 1 1 1 1 11 1 11 1 1 11 1 2 222222 1 1 1 11 11 1111 1 1 1 2 1 11 11 1 222 1
lowQualScore : 1 3 6 6666666 1 5 22222222222222 22 88 3333333 55 6 55555555555555555555555 3 44 6 44 1 6 1 333 222 111 1 99 99 88 33 6 4444 0 1 6 0 555 6 999999 9 00 6 99 1 7 7 2 66 8888888 5 7777 5 5 888888 3 5 99999999999999999999999999 3 77 0000000000000000000000000000 3 4 66666 4 55555555555 3 3 555555555 666 6 555 33 11111111111 5 8 2 33 0 33 11 8 11 11 8 8 11 3333 8 99 8 0 8 444 55555 66666666 2222 2222 00000 8 0 0 8 6 8 33333 8 444 66666666666666666666 1 11 5555 88 8 11 22222222222 555 7777 333333333333333 111 99 11 8 111111 444444 55 6 999 6 99 6 777 6 6 99999999999999999999999999 111 1111111111111111 4444 88 8 0 88888 0 2 3 0 2 0 0 7 2 0 99 0 0 2 1 55555555 0 777 3 2 33 0 2 666 0 3 2 3 0 2 55555 0 0 33 111 0 0 0 777 3 1111 0 2 00 0 0 3 0 2 666666666 0 33 0 3 33 0 777 33 777 1 0 33 4 0 3 3 3 0 2 2 0 33 3 9999 0 00 0 000 0 3 0 55555 3 0 0 2 2 33 8 3 3 33 0 3 3333 0 3 0 0 33 3 0 444 0 55 0 33 3 33 8888 0 4444 4444 0 4444 2 777 2 9 2222222 9999 3 0 33 0 22 0 0 0 0 33 66 0 3 33 2 2 0 3 0 33 0 44 2 0 1 666666 2 0 0 3 2 0 44 2 33 33 3 4444 0 2 0 0 0 0 33 33 0 000 2 55 22 8 6 6 888 8
lowQualScore : . . . ....... . . .............. .. .. ....... .. . ....................... . .. . .. . . . ... ... ... . .. .. .. .. . .... . . . . ... . ...... . .. . .. . . . . .. ....... . .... . . ...... . . .......................... . .. ............................ . . ..... . ........... . . ......... ... . ... .. ........... . . . .. . .. .. . .. .. . . .. .... . .. . . . ... ..... ........ .... .... ..... . . . . . . ..... . ... .................... . .. .... .. . .. ........... ... .... ............... ... .. .. . ...... ...... .. . ... . .. . ... . . .......................... ... ................ .... .. . . ..... . . . . . . . . . . .. . . . . ........ . ... . . .. . . ... . . . . . . ..... . . .. ... . . . ... . .... . . .. . . . . . ......... . .. . . .. . ... .. ... . . .. . . . . . . . . . .. . .... . .. . ... . . . ..... . . . . . .. . . . .. . . .... . . . . .. . . ... . .. . .. . .. .... . .... .... . .... . ... . . ....... .... . . .. . .. . . . . .. .. . . .. . . . . . .. . .. . . . ...... . . . . . . .. . .. .. . .... . . . . . . .. .. . ... . .. .. . . . ... .
lowQualScore : 0 3 7 0000000 0 0 77777777777777 00 33 3333333 00 7 33333333333333333333333 7 00 7 00 0 7 0 777 333 333 0 22 22 33 33 7 2222 8 7 7 7 888 7 222222 8 77 7 22 7 3 3 0 99 4444444 7 4444 7 7 000000 0 7 33333333333333333333333333 0 99 7777777777777777777777777777 2 2 77777 0 77777777777 3 3 777777777 555 7 222 88 00000000000 0 0 8 88 0 88 00 0 66 00 0 0 00 8888 0 00 0 8 0 000 66666 00000000 6666 2222 00000 0 8 8 0 0 0 00000 0 000 22222222222222222222 0 00 8888 88 0 00 22222222222 000 0000 888888888888888 888 00 22 0 000000 333333 88 7 000 7 22 7 555 7 7 77777777777777777777777777 777 7777777777777777 2222 88 0 0 55555 0 5 2 0 5 0 0 0 5 0 22 0 0 5 0 00000000 0 555 2 5 22 0 5 222 0 2 8 2 0 5 00000 0 0 22 000 0 0 0 000 2 2222 0 5 55 0 0 2 0 0 888888888 2 88 0 2 88 0 555 88 555 0 0 22 5 0 2 2 2 0 5 5 0 22 2 5555 0 55 0 888 0 2 0 00000 2 0 0 5 5 88 8 2 2 88 0 2 8888 0 2 0 0 88 2 0 888 0 22 0 88 2 88 5555 0 8888 8888 0 8888 0 555 0 8 5555555 5555 2 0 88 0 55 0 0 0 0 22 55 0 2 88 5 5 0 2 0 88 0 55 5 0 0 555555 5 0 0 2 5 0 00 5 88 22 2 2222 0 5 0 0 0 0 88 88 0 777 0 88 00 0 7 7 333 0
consensus : AAATGCCAAA-ATCAGT--CAA--TGGACA-AAG--CA-GC-CAACGCACTTTAA--GTA--AGAT-ACA-AACAATTTTTTTT-AACA-------ATGCA-ATCA-TCATNTAT-CACCAA-CCATAACCCATTGTATTTAAGAAGGCANC-AAAAAAAA--AATGA--G--GGACTC-ATAAAT-GAAATT----GGGGTCAATAATCA-GGGATGCGGTGCCG--GATCTAG-AG------GGGACAATACATTT-CCCCTT-TCACTAACC-TCA-AGCTTTCAAACACTTATAAA-AAATGAATCTTTNT-TCA-AATGTT-GT-CATTTT-AGG-ATCTT-CGA--------------------------CCCCCCCCCCC--CCC----------CCCC--CCCCA---GC-CAGTTTTTCC-----GTTC-TAC----ATNCAATTCAT-TGCAAA-AATAGGCTTTT---GTT--TTGA-ACAT-CAATCATTCTGAGT----TCTT-C-AGTCTTGCT-TAATATCT-AAATTNATGAA--G-TATTTGTTAC--AA--AA-TAAATGA--ACAT-AGAT-AAAT--TCTAATTGTT-GAG--TTTAAA-AAATCTT-TGAC---CAACA-T-T-GT-ATTAT-TGGCT--AACT--G-AAACTTTG-----CA-TTCTTTT-ACAA-T-CT--T--GCAGTC-A---TT--GAA--TATAGTGC-AT--GTGTTTGT--GCTCTT--GT-G-CA--GGTAA--TA-TTT-CCAAAAG---AGA----TCA--AA---A--AC--CCTGCAA--ATA--TGTAATTGTT-GT-A---CAAAG----T-TTTATA--AGT-ACTACA-AATT-GCCC-CT-AA---TGA-TTT-TA-T---GA---CAAA------------ATACTTTA---GATAT-T--GC-------G--CATA----GCAAAAAA-TATGTAAAAGTCGATCTGAT-CATAATT-TTAA--T-CACCAT-ACTATGTTGTACA-TAATGATTT-C-GTTAATGCAACAGGCCTGATGCAT-GCCGTACACT-ATAAGAC-ANATTTTAT-------CACATCCAGC-TC---TTGTACAAAATTCAGGTT-CATTGC-ACACG--ACA-TTTANTTTATTTT-CCACAGACATCAG-----AAGT-AT-GT-AA-T-AGGAG-TT-ATC-GTA--TACGTTACGTACC----TAG-ATCTTATACA-TATATAA-GTACCTCTCTC-CCTCCCTACCC--CCCCC--TTT-TTTTTTTTAAA--CCAAATA-CA---CTTTTTT--GAA---TCCCGTTCATCTCAAA-CTT-ACAGC-AGAAACTGGCCCCGCAAAGCGACTT-AATGAAGGTGAATGG-GGGGAAATCTATGTCATT-GT-TT-CATCA-TTTACGTTTC-ATTTAGGTTGAAGG-GTGCGTGTG-TGTGTG----TGTGTGTG-GGGGGGGGGGGG-TGGTATGTGC--ATAAGACGTGCTATTCTCAG--TC-AGAAACTTATGCATG--TACTATTATCTAA-TACACA-CTGT-CAC--AGTTAAATT-ACAC-NTCAT-TTGATTGGATAAAAACAAAC--TTACATTTGAA--ACG---ATCGATCT-GTTT-T--CTCTCGTTGT--A-TA-TTGCAACTGC-A--ATGGGG---CTACAGCTAT--CG-G-GC---ACAGCAAA-CAATTA--TTTT-CTGTGAC-TTTTG-TT-CTG-AAAT-GGGGTA-ATCATTC-ACTCCC--TACTAGCCTTT-CTGGATACC-GT--GT-GTCACTGTTACA-TTTCCCC-ATG--GCGCAG-G-TTTCTC-ACAATTTTTCAAGCGAATTCAAAGCATTTCG--TTT-AAAACATCTGC-A-TCT-AACACCTCCACCATG-TGCA-CCATCGGTGTTTTGAACGGA-G--GTCATGG--CGGACAA-TTCTCCCGCGATTTC-TGACTTGGCTGTGC-GAAGATGGTA-A-CTCCAC-CTCCCCTGACGAC-GTGGAAGG
Reference ( family-1037 ) : AAATGCCANACATCAGTGGCAAACTNGACACAAGTGCATGCTCAATGCACNNTAA--GTATTAGATGACNNAACAATTTTTTTTTAACATCTTGTCATGCATATCA-TCATGTACGCACCAACCCNTAACCCATNGTATTTAAGAAGGCACCNAANAAAAA--AATGA--G--GGACTC-ATAAAT-GAAATT----GGGGTCAATAATCA-GGGATGCAGTGCCG--GATCTAG-AG------GGGACAATACATTTNCCCCTTGTCACTAACC-TCAAAGCTTTCAAACACTTATAAA-GAATGAATCTTTNT-TCA-AATGTT-GT-CATTTT-AGG-ATCTT-CGA--------------------------CNCCCCCCCCC--CCC----------CCCC--CCCCA---GTGTAGTTTTTCC-----GTTCNTAC----ATNCAATTCAT-TGCAAA-AATAGGCTTTT---GTT--TTGA-ACAT-CAATCATTCTGAGT----TCTT-C-AGTCTTGCTGTAATATCT-AAATTGATGAA--G-TATTTGTTAC--AA--AA-TAAATGA--ACAT-AGAT-AAAT--TCTAATTGTT-GAG--TTTAAA-AAATCTT-TGAC---CAACA-T-T-GT-ATTAT-TGGCT--AACT--G-AAACTTTG-----CA-TTCTTTT-ACAA-T-CT--T--GCAGTC-A---TT--GAA--TATAGTGC-AT--GTGTNTGT--GCTCT---GT-G-CA--GGTAA--TA-TTT-CCAAAAG---AGA----TCA--AA---A--AC--CCTGCAA--ATA--TGTAATTGTT-GT-A---CAAAG----T-TTTATA--AGT-ACTACA-AATT-GCCC-CT-AA---TGA-TTT-TA-T---GA---CAAA------------ATACTTTA---GATAT-T--GC-------G--CATA----GCAAAAAA-TATGTAAAAGTCGATCTGAT-CATAATT-TTA---T-CACCAT-ACTATGTTGTACA-TAATGATTT-C-GTTAATGCAACAGGCCTGATGCAT-GCCGTACACT-ATAAGAC-ACATTNTAT-------CACATCCAGC-TC---TTGTACAAAATTCAGGTT-CATTAC-ACACG--ACA-TTTACTTTATTTT-CCACAGACATCAG-----AAGT-AT-GT-AA-T-AGGAG-TT-ATC-GTA--TACGTTACGTACC----TAG-ATCTTATACA-CATATAA-GTACC-CTCTC-CCCCCCCACCC--CCCCC--TTT-TTTTTTTTAAA--CCAAATA-CA---TTTTTTT--GAA---TCCCGNTCATCTCAAA-CTT-ACGGC-AGAAACTGGCCCCGCAAAGCGACTT-AATGAAGGTGAATGG-GGGGAAA-CTATGTCATT-GT-TT-CATTA-CTTACGTTTC-ATTTAGGTT--AGG-GTGCGTGTG-TGTGT-----TGTGTGTG-GGGGGGGGGGGG-TGGTATGTGC--ATAAGACGTGCTATTCTCAG--TC-AGAAACTTATGCA-G--TACTATTATCTAA-TACACA-CTGT-CAC--AGTTAAATT-ACA--NTCAT-TTGATTGGAT-AAAACAAAC--TTACATTTGAA--ACG---NTCGATCT-GTTT-T--CTCTCGTTGT--A-TA-TTGCAACTGC-A--ACGGGG---CTACGGCTAT--CG-G-GC---GCAGCAAA-CAATTA--TTTT-CTGTGAC-TTTTG-TT-CTG-AAAT-GGGGTA-ATCATTC-ACTCCC--TACTAGCCTTT-CTGGATACC-GT--GT-GTCGCTGTTACA-TTNCCCC-ATG--GCGCAG-G-TTTCTC-ACAATTTTTCAAGCGAATTCAAAGCATTTCG--TTT-AAAACATCTGC-A-TCT-AACACCTCCACCATG-TGCA-CCATCGGTGTTTTG-ACGGA-G--GTCATGG--CGGACAA-TTCTCCCGCGATTCC-TGACTTGGCNNTGC-GAAGATGGTA-A-CTCCNC-CTCCCCTGACGAC-GTGGAAGG
gi|1 : A--AATGA--GAGGGGCT--ATAGAT-TAAATT----GGGGCCAATAATCA-GTGATGCAGTGCTG---ATGTAA-AG------GGGACAATAAATCTAGAACTTGTCACCAACC-TCAAAGCTC---AACACTTATAAA-GAATGA-----TAT-TCA-AATGTT-GT-CATTT--ATG-ATCTT-CGA--------------------------CACCCCTCCCC----------------------CCCA---GTGTAGTTTTTCC-----GTTC-TAC----ATT---TTTAT-TGCAAA-AATAGGC--TT---GTT-----A-AC---CAATCATTCTGAAT------CT-C-AGTC-TGCTGTAATATCT-AAAT
gi|2 : actcttccacgctccgccctgatggcataacagtcatcacgtgttacaagactccgtcaacttacatgtaaacaacatgggtgcatgtcatgcttgcaccgtacatattgtaaatcgcctcgttttgacgacgaattgttcacagaaaagttgtcaaggatctgacacagcttgcagagaaagttacgttcactaaaatttatgagtcaataacgcagaacagcacttgtaaacgggtgctactcatagtctcgatgctttcgtaacatggatgcatgtattatgtgtacagatatggctgcagaaaaactgtcccgatatttttacagagagctacatgctgcagctagctgcatcagatggtaaactacgggaaattaaacgagtttaattttttgtgaggaatttaaaaatgttgttttagttaaaaaacttaataaaatagccctaaaacgtctgcgtttacccgttcccattttataagatgttttcatctgctgtctgcatatttatattgtatttttcagcctaactaatagccacttccacaaatattgaactacattgggatatattaaaaattggttgcttaaagatttatatagtggcattgcatatgtatcccccttttttccaggtctatctccctaatccaatatatatgctaataaaatacacggacggttcgggtggtaacacccgtcacaggcaatcacagaagggaaaaaaactcgtaacgtaattaattatagtaatagttcatttatttgtaaatgccatattgaacacagtaaacttatattttcagccagtttaaagataacatccatgggtcagcaatggaatggaacacacaaacaacatacaagtcaataaggcagataatctttatatcaaagttgatcaatgcatagtgcgattgaaattaaaattcttgtattccaaataattgtattgccctgatcatgttgagaataatgcaattcttttgtcatgtcctccttcttttacgtacttgggaaacttgcacaatcaaatctccaagcaaagtacatgtttgcaaggttaattgtaaaatatatcaaaacacgccttggtattcttttctattgtaaagagaattgttttctgctaaaaaggggaagcttgtgatactgggttgatctacataactggagttatgatcgattcgtatgctctgttgatgacgagtgtgatctctttagctaaaaaattctgctgtaccaagtatatccaaatgaatcgtaaaaaaaaaaccgacaagaatatttttttaatatgtcaaatgccaaatcaatacagcaatatatcttttaaaaatagcacatattacctaaaactaacccgtgttatctAAATGCCAAA-ATCAGT--TAA--TGGACA-AAG--------CAGCACATTTTAACAGTA--AGAT-ACA-AACAACTTTTTTT--ACA-------ATA---ATCAGTCATTTAT-CAGCAAACTATAACC-ATTGTATTTAAGAAGGCAATAAAAAAAAACCAATGA--G--GGACTC-ATAAAT-GAAATT----GGA-TCAATTATCAAGGGATGCGGTGGCG--GATCTAG-AG------GG-ACAATACATTTTCCCCTT--CACTA-CC-TCA--GCTTTCAAACA-TTATAAA---ATGAATCTTTCT-TCT---TGTT-GTTCATTTT-AGGCATCTT-CGA--------------------------CCCCCCCCCCC--CCC----------CCCC--CCCCA-------AGTTTT-CC-----GTTTTTAT----ATACAATTCATCTGCAAAGAATAGGCTTTT---GTT--TTGA-ACAT-CAAT--TTCTGAGT----TCTT-CCAGTCTTGCTCTAATATCT-AAATTTATGAA--G-TATTTGTTAC--AA--AA-TAAATGA--ACAT-AAAT-AAAT--TCTAATTGTT-GAG--TTTAAA-AAATCTTCTGAC---CAACA-T-TTGT-ACTAT-TGGCT--AACT--G-AAACTTTG-----CA-TTCTTTT-ACAA-T-CT--T--GCAGTC-A---TT--GAA--TATAGTGC-ATT-GTGTTTGT--GCTCT---G--G-CA--GGTAA--TA-TTT-CCAAAAG---AGA----TCA--AA---A--AC--CCTGCAA--ATA--TGTAATTGTT-GT-A----AAAG----T-TTTATA--AGT-ACTACA-AATT-GCCC-CT-AA---TGA-TTT-TA-T---GA---CATA------------ATACTTTA---GATAC-T--GC-------G--CATA----GCAAAAAA-TATGTAAAAGTCGATCTGAT-CATAATT-TTA---T-CACCAT-ACTATGTTGTACA-TAATGATTT-C-GTTA-TGCATCAGGCCTGATGCAT-GCCATACACT-ATAAGAC-AAATTTTAT-------CACATCCAGC-TC---TTGTACAAAATTCAGATT-CATTGC-ACACGCCACA-TTTAGTTTATTTT-CCACAGACATCAG-----AAGT-AT-GT-AA-TTAGGAGGTT-ATCCGTA--TACGTTACGTACC----TAG-ATCTTATACA-TATATAA-GTACCTCTCTC-TCTCTCTACCC--CCCCCCTTTT-TTTTTTTTAAA--CCAAATAACA---CTTTTTT--GAA---TCCCGTTCATCTCAAAACTT-ACAGCCAGAAAC-GGCCCCGCAA-GCGACTT-AATGAAGGTGAATGG-GGGGAAATCTATGTCATT-GT-TTTCATCA-TTTACGTTTC-ATTTAGGTTGAAGG-GTGCGTGTG-TGTGTG----TGTGTGTG-GGGGGGGGGGGGGTGGTATGTGC--ATAAGACGCTC-ATTCTCAG--TC-AGAAACTTATGCATG--TACTATTATCTAA-TACACA-CTGT-CAC--AGTTAAATTTACA--TTCAT-TTGATTGAAT-AAAACAAAC--TTACATTTGAA--ACG---ATCGATCT-GTTT-T--CTCTCGTTGT--A-TA-TTGCAACTGC-A--ATGGGG---CTACAGCTATTACA-GCGC---ACAGCAAAACAATTA--TTTTTCTGTGAC-TTTTG-TT-CTG-AAAT-GGGGTA-ATCATTC-ACTCCC--TACTAGCCTTT-CTGGATACC-GT--GT-GTCACTGTTACA-TTTCCCCCATG--GCGCAG-G-TTTCTC-ACAATTTTTCAAGCGAATTCAAAGCATTTCG--TTT-AAAACATCTGC-ACTCT-AACACCTCCACCATG-TGCAGCCATCGGTGTTTTGAACGGA-G--GTCATGG--CGGACAACTTCTCCCGCGATTTCGTGATT--GCGTTGC-GGAGATGGTACA-CTCCCA-CTCCCCTGACGACTATGGAAGG
gi|23 : AAAG----T-TTTATA--AGT-ACTAAA-AATT-GCCC-CTAAA---CGA-TTT-TA-T---GA---AAAA------------ATACTTTA---GAT---------------------------------A-TATGTAAAAGTCGATCT-AT-Ct
gi|26 : TTGGCTGTGC-GAAGATGGTA-A-CTCCAC-CTTCCCTGACGAC-GTGGAAG
gi|27 : aTA-A-CTCCAC-CTCCCCTGACGAC-GTGGAAGcat
gi|28 : TTGGCTGTGC-GAAGATGGTA-A-CTCCAC-CTctg
gi|3 : TTATAAATAAATGAAT-TATGTATCATAATGT------ACATT-A---------CGG--------------------------CCCCCCCCCCC--CCC----------CCCC--CCCCt
gi|3 : actcttccacgctccgccactggatggcaacgtcacacgcgtgtttacagactcgtcaacttgcatgtaaacaacatggcgcgcgatgtccgctcttgcaccgggtatcatgttaagtcgccttcgtttgaaccacgaaattttacagaaaagttgtccaaaggatctgacacccttctgagaaagttacgttcacaaaatttcactgagtaaaatcgcagaaacacaattgtaaaacgtgtgcaactagatgctttcgtagcatgaattgcattgttattacagtggcagaaatggtgtagaacaaattgtcccaatattttaacagagagctactgttctgaggctagtgcacagatgggtaaacacggtgcaattattgagtttaaattgttttgttaaggaatttaaaatggttgtttagttaaaaactgaataaaaaataggctatatttgcgcgttttaccgttcttttaatttttataaatgtttcatctgcttttaactaaaatcaccatcttccaaatgtgaaactatcaattgtttaagattttaaggacaagtatcccccttttccccccaggctaccctaatccaatatatttctataaatacacccgtccacacaaatccaacggatggggggAAATGCCAAA-ATCATT---AAACTCGACAAAA---CA-GC---ATGCACATTAA--GTA--AG-T-ACAAAACAATTTTTTTTAAA------------CATATC---CATATATGCACCA---CATAACCCATAGTATT--AGA--GCAT---AAAAAAC--AATGA--G--GGA-TC-ATAAAT-GAAATT-----GGGTCAATAGCAA-GGGGAGCACTGCTG--GATCTAG-AG------GGGACAATACATTT-CCCCT--TCACTCA-C-TC--AGC-TTCAAACA-TTATAAA--AATGAATCTTCTT-T-----TGTT-GT-CATTTT-AGG-AT--------------------------------------CCCCCC--CCC----------CCCC--CCCCA-------AG-TTTTCC-----GTTTATATACAAATACAATTCAT-TGCAAA-AATAGGC-TTT---G----TTGA-AC---C-ATCATTCTGAGTCTCATCTT---AGTCTTGCTCTAATATCacacgtattaaaaatacagtagccaattaaagatagcattcctgtggggtcaatggaactgaatctaactcaaagacaagatacattaagtcatacggcaaagaatatttatcatcaaaattgatcaatgccacaagtgttgaaatataaaactttttgaattccaaataatgttctgctgcctcatcagtgttaaaataattggcaaattcttttgtcatgtccctccttctttacatacttgggaacttgcaacagatacaaacttccaacaaagtacatgttgcagttcaattggtaatatcaaatcagccttcataagtgggtatttttttccattgtaagtagaatattgtttttggtacaaagggatagctttgttgatagggttgatctaataactggagttgatgatgattcagtctgaggtatgctctgttgatgaagagtgtggtttttgactaaaaaatgctgctgtaccaagtattctcaaatgaattgtaaacaaagacagaatattttttaatactgtgcaaaatgccaaaatcattaaactcgacaaaacagcatgcacattaagtaagtacaaaacaattttttttaaacatatccatatatgcaccacataacccatagtattagagcataaaaaacaatgagggatcataaatgaaattgggtcaatagcaaggggagcactgctggatctagaggggacaatacatttccccttcactcactcagcttcaaacattataaaaatgaatcttcttttgttgtcattttaggatcccccccccccccccccaagttttccgtttatatacaaatacaattcattgcaaaaataggctttgttgaaccatcattctgagtctcatcttagtcttgctctaatatc
gi|4 : actcttccacgctccgccactggatggcaacgtcacacgcgtgtttacagactcgtcaacttgcatgtaaacaacatggcgcgcgatgtccgctcttgcaccgggtatcatgttaagtcgccttcgtttgaaccacgaaattttacagaaaagttgtccaaaggatctgacacccttctgagaaagttacgttcacaaaatttcactgagtaaaatcgcagaaacacaattgtaaaacgtgtgcaactagatgctttcgtagcatgaattgcattgttattacagtggcagaaatggtgtagaacaaattgtcccaatattttaacagagagctactgttctgaggctagtgcacagatgggtaaacacggtgcaattattgagtttaaattgttttgttaaggaatttaaaatggttgtttagttaaaaactgaataaaaaataggctatatttgcgcgttttaccgttcttttaatttttataaatgtttcatctgcttttaactaaaatcaccatcttccaaatgtgaaactatcaattgtttaagattttaaggacaagtatcccccttttccccccaggctaccctaatccaatatatttctataaatacacccgtccacacaaatccaacggatggggggggggggggggggggggggggggccgtaatgtacattatgatacataattcatttatttataaacacgtattaaaaatacagtagccaattaaagatagcattcctgtggggtcaatggaactgaatctaactcaaagacaagatacattaagtcatacggcaaagaatatttatcatcaaaattgatcaatgccacaagtgttgaaatataaaactttttgaattccaaataatgttctgctgcctcatcagtgttaaaataattggcaaattcttttgtcatgtccctccttctttacatacttgggaacttgcaacagatacaaacttccaacaaagtacatgttgcagttcaattggtaatatcaaatcagccttcataagtgggtatttttttccattgtaagtagaatattgtttttggtacaaagggatagctttgttgatagggttgatctaataactggagttgatgatgattcagtctgaggtatgctctgttgatgaagagtgtggtttttgactaaaaaatgctgctgtaccaagtattctcaaatgaattgtaaacaaagacagaatattttttaatactgtgcaAAAAA--AATGA--G--GGACTC-ATAAAT-GAAATT----GGA-TCAATA-TCA-GGGATGCGGTGCTG--GATCTAG-AG------GGGACAATACATTTTCCCCTC-TCACTAACC-TCA--GCTTTCAA-CATTAGTAAA-AATCGAATCTTT-T-TC----TGTTTGT-CATTT--AGGCATCTTTCGACCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC--CCCCCCCCCCCCCCCCC--CCCCC---CCCCCGTTTCCCCCCCCCATTTGTA------TACAATTCATCTGCAAAGAATAG--CTTT---GTT--TTGA-ACAT-CAAT--TTCTGAGT----TCTTCC-AGTCTTGCT-TAATATCT-AAATTGATGAA--G-TATTTGTTAC--AA--AA-TAAATGA--ACAT-AAAT-AAAT--TCTAATTGTT-GAGTTTTTAAA-AAATCTT-TGAC---CAACATT-T-GT-ATCGTATGGCT--AACT--GCAAACTTTG-----CA-TTC-TTT-ACAA-T-CTTCT--GCAGTCAA---TT--GAAATTATAGTGC-AT--GTGTTTGT--GCTC----GTGG-CA--GGTAA---A-TTGACCAAAAAGC-AGA----TCA--AA---G--AC--CCTGCAA--ATAG-TGTAA-TGTT-GT-A---CAAAG----TCTTTATAC-AGTAACTACA-AATT-GCCC-CT-AAC--TGACTTT-TACT---G-----AAC------------ATACTTTA---GATATAT--GC-------G--CATA----GCAAAAAA--ATGTAAAAGTCGATCTGATCCATAATTAATA---T-CACCATAACTATGTTGTACATTAATGATTTGC-GTTAGTGCAACAGGCCTGATGCATCGCCATACACTAATAAGAC-AATTTCTAT-------CACATCCAGC-TC---TTGTACAAAATTCA-GTT-CATTGCAACAC---CCACTTTACTTTA-TTT-CCACAGACATCAG-----AAGT-ATCGTCAATT-AGGAG-TTAATC-GTA--TACGTTACGTACC----TAGAATCTTATACA-TATATAA-GTACCTCTCTCTCCTTCTTACCCCTCCCCC--TTTGTTTTTTTTAAAC-CCAAATA-CA---CTTTTTTGGGAA---TCCCGTTCATCTCAAA-CTT-AC-GC-AGAAACTGGCCCCGCAAAGCGACTGAAATGAA--TGAATGGTGGGGAAATCTATGTCATTCGTGTT-CATCATTTTACGTTGCAATTTAGGTTGAAGGTGTGCGTGTT-TGTGT-----TGTGTGTGTGGGGGGGGGGGG-TGGTATGTGCATATAGGACGT-CTA-TCTCAG--TCAAGAAACTTATGCATG--TACTATTATCTAATTACACAGCTGT-CAC--AGTTAAATT-ACAT-TTCATCTTGATTTGATAAAAACAAACTATCACATTTGAA--ACGGTCATCGATCTCGTTTCT--CTCTCGTTGT--AGTA-TTGCAACTGCAA--ATGGGGCGCCTACAGCTAT--TACA-GC---ACAGCAAA-CAATTA--TTTT-CTGTGACTTTTTG-TTCCTGAAAAT-GGGGTATATCA-TC-ACTCCCTTTACTAGCCTTTCCTGGATACC-GTTCGT-GTCA-TGTTACAGTTTCCCC-ATG--GCGCAGCGTTTTCTCAACAATTTTCAAAGCGAATTCAAAGCATTTCAGTTTT-AAAACATCTGC-A--CT-AACACCTCCACCATGTTGCA-CCATCGGTGTTTTGAACGGA-GGCGTCATGGGCCGGACAA-TTCTCCCGCGACTTC-TGACTT-GCGTTGCGGAAGATGGTA-ACCTCCTCACTCCCCTGACGAC-ATGGAGG
gi|5 : gcatttgA--AATGA--GAGGGGCT--ATAGAT-TAAATT----GGGGCCAATAATCA-GTGATGCAGTGCTG---ATGTAA-AG------GGGACAATAAATCTAGAACTTGTCACCAACC-TCAAAGCTC---AACACTTATAAA-GAATGA-----TAT-TCA-AATGTT-GT-CATTT--ATG-ATCTT-CGA--------------------------CACCCCTCCCC--CCC--------------------A---GTGTAGTTTTTCC-----GTTC-TAC----ATT---TTTAT-TGCAAA-AATAGGCTT-----GTT-----A-AC---CAATCATTCTGAAT----C--T-C-AGTCT-GCTGTAATATCT-AAATT--TGAA--GCTATTTGTTAC--AAGAAA-TAA-TGA--ACAT-AGAT-ACAT--T---ATTATT-GATC-TTTCTA-AAATCTT-TGAC---CAACA-G-T-GT-G--AT-TGGCT--A-CT--G-AAACGATT-----CAGTTCTT-----AACT-CT--T--GCAGTC-A---TT-----------------T--GTGTGTAT--GCT-T---GT-G-CA--GGTAA--TA-------GAATG---ATA----TC----------------CTGCAA--ATACATGTA-----T-GTGA---TAAAG----C-TT------AGT-ACCATA-A-TT-GACC--T-AAAGATGA-TTT-TAGT---GA---CAAAAATGTTTTAGATATGCGTTAAGTGAAAT-T--GTTTTTATAGATCATGAAGGGCAAAAAAATATATGAAGTCCGATCTGAT-CATAATC-TTAAATTACACCAC-A--ATGT-GTATA-TAAT--TTT-CTGTTAATGCAATAAGTCTGAT---T-GC-GTTCACA-GTAAGAC-ACATTGTATACACATGCACATCCAGCCTCAGATTGTACAAGATTTAGGTTGCATAAC-A-ACG--ACA-TT-ATTTTATATCACCA-AGGCACCAACCAGAAAGTGAT-GT-CA-T-AGGAG-GT-ATC-GTAAATACGTT---TACTAGAGTAG-AT--TATAAAACACATAATGTAAC-C---C-CCTCCCCAGCC--CTCCC--TTT-TTTTTC---AA--CCAAATC-AA---TTTTTTT--GGACCATCTCGGTCATCTCAAA-CTTTACAGC-AGAAACTGGCATGGCAAAGCGACGT-AATGAAGGTGAATGG-TGGTAA--TTGTTTCATT-TT-TA-AAATA-CTTACTTTTC-ATGTGGGT----GG-GTGCG---G-TGTGT-----CG---------GGAGGGTGGG-TGGTAT-TGC--ATAAGACGTGCTATTCTCAAGATT-AGAA--CTAAGCA-GGTTACTATTAAGTAAATAC-CA-CTGT-CAC--AGT-AAATT-ACA--ATCACATTGATTG-AT-AAAACAAAC--TTACATTTGAATGACG---TGTGATCT-GTTT-TA-TTCTCATTGA--A-TA-TTGTAACTGC-AGCACGGGG---CCCCGGCAAT--GG-G-GCTCAGCAGTAAG-CAATTA--TTTT-CTGTGA---TTTGCTT-CTG-CAATTGGGGTA-ATC-TTC-AC--CC--TA-TA-TCTTT-C-GGGTACCCGT--GTTGTCACTGCTA---TTCCCCC--TGCTG-GCAG-G-T--CTT-ACAAGTT--CAAGCGAATCCACA--ATCTCG--TT--AAGACATCTGC-A-TCT-AACA--TCCACCATG-TGCA-CAATAGGTGTTTTT-GCGGAAG--GTCATGG--CGGACAA-TTTTCCCGCGATTt
gi|6 : ggttgatctacataactggagttatgatcgattcgtatgctctgttgatgacgagtgtgatctctttagctaaaaaattctgctgtaccaagtatatccaaatgaatcgtaaaaaaaaaaccgacaagaatatttttttaatatgtcaaatgccaaatcaatacagcaatatatcttttaaaaatagcacatattacctaaaactaacccgtgttatctA--AA-TAAATGA--ACAT-AGAT-AAAT--TCCA-TTGTTTGAG--TTTAAA-AATCTTT-TGAC---CAACA-T-T-GT-AT-AT---GCT--A-CT--G-AAAACTTG-----CA-TTCTTTT-ACAA-TTCT--T--GCA-TC-A---TT--GA-----CAGT----------TTTGT--GCTCTT--GT-G-CA--GGTAA--TA-TTT-C-AACAG---AGA----TCA--CA---A--AC--CCTGCAA---TA--TGTAATTGTT-GT-C---CAAAG----T-TTTATA--AGT-ACTACA------------T-AA---T---TTT-TAAT---GA-----AA------------ATACTTTA---GATAT----GC----------CATA----GCCAAAAA-TATGTAAAAGTCGATCTGAT-CATAATT-TAAA--T-CACCAT-ACTATGTTGTACA-ATATGATTT-C-TTTAATGCTACAGGCCTGATGCAT-GC--TACACT-AAAAGCCCACATTTTAT--------ACATCCAGC-TC---T-GTACAAAATTCAGAT--CATTAC-ACACG--ACA-TTTA-TTTATTTT-CCACAGACATCAG-----AAGT-AT-G--AA-T-AGGAG-TT-ATC-GT---TACGACACGTAGC----TAG-ATCTTATACA--ATATAA-GTACC-CTCTC-CCCC-----------------TT-TTTTTTTTAAAAACCAAATA-CAACATTTTTTG--GAA---TCCCCCGCATCTCAAA-CT--ACAGC-AGAA-CTGGCCCCGCAAAGCGACTT-AATGAAGGT-AATGT-GGGGAAA-CTAAGTC-TT-G--TT-CATTA--TTACGTTTC-ATTTAGGTT--AAG-GTGCGTGTGTTGTGTGTGTGTGTGTGTG-GGGGGGGGGGGG-T--TATGTGC--ATAAGACGTGCTATTCTCAG--TC-AGAAACTTATGCA-G--TACTAATTTCTAA-TACACA-CTGTCCACAAAGTTAAATT-ACACTATCAT-TTGATT-GATAAAAACAAACG-TTACA-TTGAA--ACGT--GTCGATCT-GTTT-TTCCTCTCGCTTTAAA-TACTTGCAACTGC-A--ATGGGG---CTACAGC--T--C--A-GC---AC-GTAAA-CAATTATTTTTT-CTGTGAC-TTTTG-TT-CTG-AAAT-GGGGT---TAATTCAACTCCT--CCCTAGCCTTT-CTGGATACC-GT--GT-GTAGCTGTTACATTTACCCC-A----GCGCAG-G-TTT-TC-CCAATTTTTCAAGCGAATTCAAAGCATTTCG--TTTAAAAACA-CTGCAA-TCTAAACACCTCCACCATG-TGCA-CCATCGGTGTTTTG-ACGGA-G--GTCATGG--CGGAGAA-TTCTCCCGCGATT-C-TGA-TTGGCTGTGC-GAAGATGGTA-A-CTCC-C-CTCCCCTGACGAC-GTGGGAAG
gi|7 : acATGCCACACAT-AGTGGCAA--TGGACACAAGTGCATGCTCAA--CACTATAA--GTATTAGATGACTTAA--ATTTTTTTTTAACATCTTGTCATGTA-AT-A-TTATGTAC-CAC-AACCCCTAACCCATTGTATTTA-GAAG-CACCTAACAAAAA----TGAAGG--GGACTCGATAAATAGAAATTCGACGGGTTTAATGATCA-GGGATGCATTTTCGTGGATCTATTAGACTTCTGGGACAATACATT--CCCCAGTTCACTAACCCTCTTATCCTTCAA-CATTTATTAA-AAATGGATCTTCCT-TCA---T-TT-GT-CATTTTTAGG-ATTTT-TGA--------------------------CCCCCCCCCCCACCCCA---------CCCCTGCCCCAACCGCCCA---TTCCC-----CCCCCTCC----CTCC----CAG-TG-----AATAG--TTTTCCCGTTCTTTGATATATATAATC-------------TCCT-C-AA-ATTGCA--AAAATCTTAAATTAATGAACAG-TATTTGTTACCAAA--AACTAAA-GACCACATTAGATTAAGTGGTTTTATTGTT-GAG--TTTAAAGGAATC-T-TGACCATCAACA-TAG-GTAATTCC-TTTCTTCAACTTGA-AAACTTTGTCGATTA-CTCTCTTAATAAGT-CA--TCCGCAGTC-AATGTTTAGAAC-TAT-GTGCAATAGATGTATGCTAGCTCCTGGGT-GTCAGGGGTAAATCACTTT-TCAAAAACGCAGATTCCTCATTAATTTACCACAACCTGCAATGATA--TGTACTTGTTGGT-AACTCCAAGCTTTT-TTTATAGGAGT-ACAACACAATTAGCCCACT-AAAC-AGA-TTTCTA-TCCGGAAACCAAA------------ATACTTTA---GTTAT-TTAG--------G--TATA----GTAAAcgtg
17 sequences could not be aligned to this reference sequence:
Unaligned ( gi|8 ): ATCGTTAATCGCTCGTATTTTTACCTGCGGATATATTTCACAGACAATCAGTTTGTCAAAAGACTCTAGACCCAACTTGCTCGCCAGAAAAGTTACTGTCTAGTTCAACAAATTTCACTCGCTAGTAAACGCAGAAGTAGCAACGAAATTGTGAAACCTTGCGTGCACTAGATGCTTTCGTTAGCATGATGTTACATTGGCATGTTATTTGTGCAGAAATGTTGTAGAACAAATTGTCCAATATTCATTCAGAGCAGCAACAATTCTTGCAGCTAGTGCCCAGATGCGATACCAACATTGTATTTCATTTTGTTATTTGGGATTTTA
Unaligned ( gi|9 ): CTCTTCTCACCGCTCCGCCTACTGATGGCAACGTCACATTCGCGTGTTACAGATCCTCAAGCTTGCATTAAACAACATGGCGGCGATGTCGATCTTGCACGGGTATCATGTAATCGCCTCGTTTGGCACGAATTCTTCACAGAAAGTTTGTCAAATAGGATCTGCACATTACTTCATGAGAAAGTTACCGTTTCAAAAAGTGTTCTACTGAGAAAAAGAACGCATGAAACAGCAATTGTAATCAACTGGCCACTGGGATGCTTTCCGTAGCCTGAATGCCATGTTATTACCAGTGTGCATGAAATGG
Unaligned ( gi|10 ): TTTTTAACAGCAAAGTTTGTCAAAGGATCTGACACGTTCAGAGAAAGTTGCGTTCACAAAATATTTCAATGAGTGAAAAACGCAGAAAACAGTTTAAACGTGTGCACTAGGATGCTTTCGTAGCAATGATTATATTATTGTGTGCAACGAGATGGCTGGCAGAACAATATTGTCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTCACAGAAATGGGTAAACTACGGACACCAATTTCGAGTTTATTGTTT
Unaligned ( gi|11 ): CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCGCCCCCCCCCCCCCCCCCCCCCCCCCCCCCACCCCCCCCCCCCCCCCCCCCCCCCCCCCAATGAAAATATGTATTAAAAGTTATGAAATTCATTCTTATCACAGTTTATTTCTAAAATAGTGAATTTCAGAACAAAAAGTCTGCACTAAATGAACAATATTATATAAATTTTGATAAATTTATAACTCTAGCATTGAAACTATTTGTAACA
Unaligned ( gi|12 ): TCACTCTTCCACGCTCCGCCCACTGATGGCAACGTCACACACGTGTTTACAGACTCCGTCAACTTACATGTAAACAACATGGCGAGCGATGTCGATCTTGCACCGGGTATATTGTTAATCGTCCCGTTTGACAACGAATTTTCACAGAAAAGTTTGTCAAATGATCTGACATACTTCAGAGAAAGTTACTTACGTTCACAAAATTTCACTGACTAAAA
Unaligned ( gi|13 ): CCCCACCCCCCCCCCCCCCCCCCCCCCCCCCCCCTCCCCCCCCCCCCCCCCCCCCCCCCCCCCTTTTCACCTACATATTTATAGTACATGTATTGATAACATGAAAGGTATATTATTGCAATTGATATCACAATATTTACGTATTCTAATAACAACCTTGACCTTATTGACTTAGAAATTGATGCGTAGCATCATATCT
Unaligned ( gi|14 ): CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCACGCCCCCCCCCCCCCTTTAATTTGTGCCAACTTCTTAAAAGTATACTTTTATCATACTTGCATATCATTTTTTATTTTAACATTTCAATATAAATTCATCAATCTTTATTTCATAATTAAT
Unaligned ( gi|15 ): CATGTTTTTCATAATAAACTCGAATCGCATATAAACAGAGAGAGAGGGGGGGGGGGGGGGGGGGGGGGTTGGACCTATCGGTAATAGTGTACAGTTCTATTATGAACATTAGAGAACATTTTCAAAATCAAATATTAA
Unaligned ( gi|16 ): CCCCCGCCACCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCTTAAGTATTTCACAATACACATTCACACCGAATAAATATATCTGTATTGACAAAGTTCGTTGATATCACGGAGAAATAT
Unaligned ( gi|17 ): ACTCTTTCCACGCTCCGCCCACTGATGGCAACGTCAGCACGCGTGTTTACAGACTCCGTCAACTTTACACTGTAAAACAACATGGCGATCATGTCGAATCTTGCACGGGTCATC
Unaligned ( gi|18 ): ACTCTTCCACGCTCCGCCCACTGATGGCAACGTCACTCACGTGTTTACAGACTTCGTCAGCTTACATGTAATTAACATGGCGAACGATGTCAATCGTGCATCGGGTACC
Unaligned ( gi|19 ): TTGGTATAAGTTTTTTCTATTGTAAATAGATATATTGTTTTTGCTGGTAAAAGGAATATCTTGTTGATAGGTTGGATCTATTATAAACTGG
Unaligned ( gi|20 ): GATTTAAAAATGTTTAGTTAAAAAATCCTGAATAAAATAGGTATATATTTGCTGCGTTACCGTTCCACTTATAAATGTTTCATTGCTTTC
Unaligned ( gi|21 ): CCCCCCCCCCCCCCCCCCCCCCTCAGCTAAATTCACCCAGATCTGTGGTTATAATTGGTAAGAAAAGTTTAGTGGATATCTCAATA
Unaligned ( gi|22 ): CCCCCCCCCCCCCCCCCCCTTTTTACCCTCAGCGGGATATTTTTTTATTGACATTGTATTAGATAAATTTTGGAAGGTAT
Unaligned ( gi|24 ): CACTCTTCCACGCTCCGCCCACTGGAGGCAACGTCACACACGATGTTTACAGACTCCGTACAACTTACATG
Unaligned ( gi|25 ): ATTCACTCTTCCACGCTCCGCCCACTCCGTCAACTTACATGTAAACAACATGG
Alignments
lowQualScore : 1 222 1 1 11 1 555555 11 11 11 222222222 888888888888888888888 444444444 111 6666666666666 222222 11 1111 1 111 111111 22222 333 1 1 2222 11 11 3333333333333333333 777777777777777777777777777777777 22222 1111 1 1 111111111111111 222 11 22222222222 2 1 11 1 1 11 11 11 11 11 111 11111 11111111 1111 1111 22222 1 11111 111 55555555555555555555 11 111111 11 22222222222 222 1111 333333333333333 111 11 11 222222 111111 11 222 44444444444444444444444444 111 5555555555555555 1111 1111111 1 1 1 1 1 11 1 1 33333333 1 2222 1 1 111 1 1 1 22222 1 1 22222 1 1 1 111 2222 1 11 1 1 1 111 11 11 1 111 1 222 11 111 1 1 1 1 1 11 22222 11 1 111 1 222222 111 11 1 11 1 1 1 1 1 1 11 1 333 2 2 1 22 11 2222 1 2222 1111 1 1111 111 4444444 222 22 11 1 1 1 1 11 1 11 1 1 11 1 1 2 11 11 1 11 1 111 1 1111 1 1 1 1 1 1 11 11 1 1 1
lowQualScore : 3 6 222 3 3 88 3 888888 88 88 0 8 11 555555555 333333333333333333333 1 8 666666666 777 8888888888888 999999 99 33 6 4444 9 1 6 0 0 555 6 999999 44444 1 6 555 5 7 2 5 5 8888888 5 7777 5 5 44 2 00 0 5 8888888888888888888 5 77 555555555555555555555555555555555 2 33333 5 77 3333 3 3 666666666666666 6 555 33 11111111111 6 6 0 33 0 0 11 11 11 11 8 8 11 3333 8 99 8 0 8 444 55555 66666666 2222 2222 00000 8 0 0 8 6 8 33333 8 444 66666666666666666666 1 11 666666 8 11 22222222222 555 7777 333333333333333 111 99 11 8 111111 444444 55 6 999 6 99 6 777 6 6 99999999999999999999999999 111 1111111111111111 4444 88 8 9999999 0 2 3 0 2 0 0 3 2 0 99 0 0 1 0 55555555 0 0000 333 0 0 2 666 0 3 0 3 0 2 55555 0 0 11111 0 0 0 777 3 1111 0 2 77 0 0 5 222 1111 2 33 33 0 666 0 777 33 777 0 0 3 0 3 0 3 3 3 0 2 2 0 22 3 99999 77 0 555 0 888888 2 8 666 2 2 33 2 2 0 3 33 0 3 9 0 0 0 3 0 0 33 3 0 000 0 1 5 33 3 33 8888 0 4444 4444 0 4444 777 9 2222222 3 777 33 22 0 0 0 0 33 66 0 2 33 2 2 0 3 0 33 0 2 2 0 0 22 33 0 33 2 0 3 2 777 0 3 4444 0 2 0 0 0 5 0 33 33 0 7 3 2 0 8 6 6 888 8
lowQualScore : . . ... . . .. . ...... .. .. . . .. ......... ..................... . . ......... ... ............. ...... .. .. . .... . . . . . ... . ...... ..... . . ... . . . . . ....... . .... . . .. . .. . . ................... . .. ................................. . ..... . .. .... . . ............... . ... .. ........... . . . .. . . .. .. .. .. . . .. .... . .. . . . ... ..... ........ .... .... ..... . . . . . . ..... . ... .................... . .. ...... . .. ........... ... .... ............... ... .. .. . ...... ...... .. . ... . .. . ... . . .......................... ... ................ .... .. . ....... . . . . . . . . . . .. . . . . ........ . .... ... . . . ... . . . . . . ..... . . ..... . . . ... . .... . . .. . . . ... .... . .. .. . ... . ... .. ... . . . . . . . . . . . . . .. . ..... .. . ... . ...... . . ... . . .. . . . . .. . . . . . . . . . .. . . ... . . . .. . .. .... . .... .... . .... ... . ....... . ... .. .. . . . . .. .. . . .. . . . . . .. . . . . . .. .. . .. . . . . ... . . .... . . . . . . . .. .. . . . . . . . . ... .
lowQualScore : 3 7 000 3 3 33 3 333333 33 33 8 0 00 444444444 666666666666666666666 0 0 222222222 000 8888888888888 222222 22 33 7 2222 2 7 7 7 7 888 7 222222 33333 5 7 555 5 3 0 7 1 4444444 7 4444 7 7 44 5 11 1 0 8888888888888888888 0 55 888888888888888888888888888888888 3 99999 7 99 6666 3 3 333333333333333 7 222 88 00000000000 7 7 8 88 0 0 00 00 66 00 0 0 00 8888 0 00 0 8 0 000 66666 00000000 6666 2222 00000 0 8 8 0 0 0 00000 0 000 22222222222222222222 0 00 000000 0 00 22222222222 000 0000 888888888888888 888 00 22 0 000000 333333 88 7 000 7 22 7 555 7 7 77777777777777777777777777 777 7777777777777777 2222 88 0 5555555 0 5 2 0 5 0 0 2 5 0 22 0 0 0 8 00000000 0 8888 888 0 0 5 222 0 2 8 2 0 5 00000 0 0 22222 0 0 0 000 2 2222 0 5 00 0 0 5 888 5555 5 88 88 0 888 0 555 88 555 8 0 2 0 2 0 2 2 2 0 5 5 0 55 2 55555 00 0 000 0 222222 5 8 222 5 5 88 5 5 0 2 88 0 2 2 0 0 0 2 0 0 88 2 0 000 0 2 5 88 2 88 8888 0 8888 8888 0 8888 555 8 5555555 2 555 88 55 0 0 0 0 22 55 0 5 88 5 5 0 2 0 88 0 5 5 0 0 00 88 0 22 5 0 2 5 000 0 2 2222 0 5 0 0 0 5 0 88 88 0 0 3 0 8 0 7 7 333 0
consensus : AAATGCCAAA-ATCAGT--NAA-TGGACA-AAG--CA-GC---ACGCACTTTAA--GTA--AGAT-AC--AAA-CAATATATTTTTTAAAA-------AT--AATCA-NCACGTAT-CACCTAAAA-CCATAACCCATTGTATTTAAGAAGGCATCTAAAAAAAA---ATGA--GGGACTC-ATAAAT-GAAATT----GGG-TCAATAATCA-GGGATGCGGTGCCG--GATCTAG-AG------GGGACAATACATTT-CC--CCTTTCACTAACC-TCA-A-GCTTTCAAACACTTATAAA-AAATGAATCTTTNT-TCA-AATGTT-GT-CATTTT-AGG-ATCTT-CGACCC-------------------CCCCCCCC-CCCC-CCC------------------CCCCAGC-CAGT---TTCTCCGTTC----T-AC--ATNCAATTCAT-TGCAAA-AATAGGCTTTT---GT--TTTGA-ACAT-CAATCATTCTGAGT----TCTT-C-AGTCTTGCT-TAATATC-TAAATTNATGA--AG-TATTTGTTA-CAA--AA--TAAATGA--ACA-TAGA-TAAAT--TCTAATTGTT-GAG--TTTAAA-AAATCTT-TGAC---CAACA-T-T-GT-ATTAT-TGGCT--AACT--G-AAACTTTG-----CA-TTCTTTT-ACAA-T-CT--T--GCAGTC-A---TT--GAA--TATAGTGC-AT--GTGTTTGT--GCTCTT--GTG-CA--GGTAA--TA-TTT-CCAAAAG---AGA----TCA--AA---A--AC--CCTGCAA--ATA--TGTAATTGTT-GT-A---CAAAG----T-TTTATA--AGT-ACTACA-AATT-GCCC-CT-AA---TGA-TTT-TA-T---GA---CAAA------------ATACTTTA---GATAT-T--GC-------G--CATA----GCAAAAAA-TATGTAAAAGTCGATCTGAT-CATAATTTNAA--T-CACCAT-ACTATGTTGTACA-TAATGATTT-C-GTTAATGCAACAGGCCTGATGCAT-GCCGTACACT-ATAAG-ACANATTTTAT-------CACATCCAGC-TC---TTGTACAAAATTCAGGTT-CATTGC-ACACG--ACA-TTTANTTTATTTT-CCACAGACATCAG-----AAGT-AT-GT-AATTAGGA-GTT-AT-CGTA--TACGTTACGTACC----TAG-ATCTTATACA-TATATAA-GTA-CCTCTCTC-CCTCCCTACCC--CCCCC--TTT-TTTTTTT-TAAA-CCAAATA--ACACTTTTTT--GAA---TCCCGTTCATCTC-AAACTT-ACAG-CAGAAACTGGCCCCGCAAAGCGACTT-AATGAAGGTGAATGG-GGGGAAATCTATGTCATT-G-T-TTCATCA-TTTACGTTTC-ATTTAGGTTGAAGG-GTGCG-----TGTGTGTGTGTGTGTGT-G-GGGGGGGGGGGGTGGTATGTGC--ATAAGACGTGCT-ATTCTCA--GTC-AGAAACTTATGCATG-TACTATTATCT-AA-TACACA-CTGT-CAC--AGTTAAA-TTACAC-NTCAT-TTGATT-GATAAAAACAAAC--TTACATTTGAA--ACG---ATCGATCT-GTTT-T--CTCTCGTTGT--A-TA-TTGCAACTGC-A--ATGGGG---CTACAGCTAT--CG-G-GCACAGCA--AAACAATTAT-TTTTCTGTGAC-TTTTG-TT-CTG-AAA-TGGGGTA-ATCATTC-ACTCCC--TACTAGCCTTT-CTGGATA-CCGT--G-TGTCACTGTTACA-TTT-CCCCATGGC--GCAG-G-TTTCTC-ACAATTTTTCAAGCGAATTCAAAGCATTTCG--TTT-AAAACATCTGC-A-TCT-AACACCTCCACCATG-TGCA-CCATCGGTG-TTTTGAACGG-AG--GTCATGG--CGGACAA-TTCTCCCGCGATTTC-TGACTTG-GCTGTGCGAAGATGGTA-A-CTCCAC-CTCCCCTGACGAC-GTGGAAGG
Reference ( family-1037 ) : AAATGCCAAA-ATCAGT--CAA-TGGACA-AAG--CA-GC-CAACGCACTTTAA--GTA--AGAT-AC--AAA-CAAT-T-TTTTTTAACA-------ATGCAATCA-TCATNTAT-CACC---AA-CCATAACCCATTGTATTTAAGAAGGCANCAAAAAAAAA---ATGA--GGGACTC-ATAAAT-GAAATT----GGGGTCAATAATCA-GGGATGCGGTGCCG--GATCTAG-AG------GGGACAATACATTT-CC--CCTTTCACTAACC-TCA-A-GCTTTCAAACACTTATAAA-AAATGAATCTTTNT-TCA-AATGTT-GT-CATTTT-AGG-ATCTT-CGACCC-------------------CCCCCCCC-CCCC-CCC------------------CCCCAGC-CAGT---TTTTCCGTTC----T-AC--ATNCAATTCAT-TGCAAA-AATAGGCTTTT---GT--TTTGA-ACAT-CAATCATTCTGAGT----TCTT-C-AGTCTTGCT-TAATATC-TAAATTNATGA--AG-TATTTGTTA-CAA--AA--TAAATGA--ACA-TAGA-TAAAT--TCTAATTGTT-GAG--TTTAAA-AAATCTT-TGAC---CAACA-T-T-GT-ATTAT-TGGCT--AACT--G-AAACTTTG-----CA-TTCTTTT-ACAA-T-CT--T--GCAGTC-A---TT--GAA--TATAGTGC-AT--GTGTTTGT--GCTCTT--GTG-CA--GGTAA--TA-TTT-CCAAAAG---AGA----TCA--AA---A--AC--CCTGCAA--ATA--TGTAATTGTT-GT-A---CAAAG----T-TTTATA--AGT-ACTACA-AATT-GCCC-CT-AA---TGA-TTT-TA-T---GA---CAAA------------ATACTTTA---GATAT-T--GC-------G--CATA----GCAAAAAA-TATGTAAAAGTCGATCTGAT-CATAATTTTAA--T-CACCAT-ACTATGTTGTACA-TAATGATTT-C-GTTAATGCAACAGGCCTGATGCAT-GCCGTACACT-ATAAG-ACANATTTTAT-------CACATCCAGC-TC---TTGTACAAAATTCAGGTT-CATTGC-ACACG--ACA-TTTANTTTATTTT-CCACAGACATCAG-----AAGT-AT-GT-AA-TAGGA-GTT-AT-CGTA--TACGTTACGTACC----TAG-ATCTTATACA-TATATAA-GTA-CCTCTCTC-CCTCCCTACCC--CCCCC--TTT-TTTTTTT-TAAA-CCAAAT---ACACTTTTTT--GAA---TCCCGTTCATCTC-AAACTT-ACAG-CAGAAACTGGCCCCGCAAAGCGACTT-AATGAAGGTGAATGG-GGGGAAATCTATGTCATT-G-T-TTCATCA-TTTACGTTTC-ATTTAGGTTGAAGG-GTGCG-----TGTGTGTGTGTGTGTGT-G-GGGGGGGGGGGGTGGTATGTGC--ATAAGACGTGCT-ATTCTCA--GTC-AGAAACTTATGCATG-TACTATTATCT-AA-TACACA-CTGT-CAC--AGTTAAA-TTACAC-NTCAT-TTGATTGGATAAAAACAAAC--TTACATTTGAA--ACG---ATCGATCT-GTTT-T--CTCTCGTTGT--A-TA-TTGCAACTGC-A--ATGGGG---CTACAGCTAT--CG-G-GCACAGC---AAACAATTA--TTTTCTGTGAC-TTTTG-TT-CTG-AAA-TGGGGTA-ATCATTC-ACTCCC--TACTAGCCTTT-CTGGATA-CCGT--G-TGTCACTGTTACA-TTT-CCCCATGGC--GCAG-G-TTTCTC-ACAATTTTTCAAGCGAATTCAAAGCATTTCG--TTT-AAAACATCTGC-A-TCT-AACACCTCCACCATG-TGCA-CCATCGGTG-TTTTGAACGG-AG--GTCATGG--CGGACAA-TTCTCCCGCGATTTC-TGACTTG-GCTGTGCGAAGATGGTA-A-CTCCAC-CTCCCCTGACGAC-GTGGAAGG
gi|1 : AT-AC--AG--CAATATATCTTTTAAAA-------AT------A-GCACATAT-TACCTAAAA-C--TAACCC---GTGTT---------ATCTAAATGA-------GA--GGGGCT--ATAGAT-TAAATT----GGGGCCAATAATCA-GTGATGCAGTGCTG---ATGTAA-AG------GGGACAATAAATCT-AGAACTTGTCACCAACC-TCA-AAGCTC---AACACTTATAAA-GAATGA-----TAT-TCA-AATGTT-GT-CATTT--ATG-ATCTT-CGACAC-------------------CCCTCCCC-CCC---------------------------AGTGTAGT---TTTTCCGTTC----T-AC--ATT---TTTAT-TGCAAA-AATAGGC--TT---GT--T---A-AC---CAATCATTCTGAAT------CT-C-AGTC-TGCTGTAATATC-TAAAT
gi|15 : actcttccacgctccgccctgatggcataacagtcatcacgtgttacaagactccgtcaacttacatgtaaacaacatgggtgcatgtcatgcttgcaccgtacatattgtaaatcgcctcgttttgacgacgaattgttcacagaaaagttgtcaaggatctgacacagcttgcagagaaagttacgttcactaaaatttatgagtcaataacgcagaacagcacttgtaaacgggtgctactcatagtctcgatgctttcgtaacatggatgcatgtattatgtgtacagatatggctgcagaaaaactgtcccgatatttttacagagagctacatgctgcagctagctgcatcagatggtaaactacgggaaattaaacgagtttaattttttgtgaggaatttaaaaatgttgttttagttaaaaaacttaataaaatagccctaaaacgtctgcgtttacccgttcccattttataagatgttttcatctgctgtctgcatatttatattgtatttttcagcctaactaatagccacttccacaaatattgaactacattgggatatattaaaaattggttgcttaaagatttatatagtggcattgcatatgtatcccccttttttccaggtctatctccctaatccaatatatatgctaataaaatacacggacggttcgggtggtaacacccgtcacaggcaatcacagaagggaaaaaaactcgtaacgtaattaattatagtaatagttcatttatttgtaaatgccatattgaacacagtaaacttatattttcagccagtttaaagataacatccatgggtcagcaatggaatggaacacacaaacaacatacaagtcaataaggcagataatctttatatcaaagttgatcaatgcatagtgcgattgaaattaaaattcttgtattccaaataattgtattgccctgatcatgttgagaataatgcaattcttttgtcatgtcctccttcttttacgtacttgggaaacttgcacaatcaaatctccaagcaaagtacatgtttgcaaggttaattgtaaaatatatcaaaacacgccttggtattcttttctattgtaaagagaattgttttctgctaaaaaggggaagcttgtgatactgggttgatctacataactggagttatgatcgattcgtatgctctgttgatgacgagtgtgatctctttagctaaaaaattctgctgtaccaagtatatccaaatgaatcgtaaaaaaaaaaccgacaagaatatttttttaatatgtcaaatgccaaatcaT-AGG----TC-CAACCC-------------------CCCCCCCC-CCCC-CCC------------------CCCCCTC----T---CTCTCTGTT-----T-AT--ATGCGATTC
gi|2 : catgtttttcataataaactcAAATGCCAAA-ATCAGT--TAA-TGGACA-AAG--CA-GC-----ACATTTTAACAGTA--AGAT-AC--AAA-CAAC-T-TTTTTTA-CA-------AT--AATCAGTCATTTAT-CAGC---AAACTATAACC-ATTGTATTTAAGAAGGCAATAAAAAAAAACCAATGA--GGGACTC-ATAAAT-GAAATT----GGA-TCAATTATCAAGGGATGCGGTGGCG--GATCTAG-AG------GG-ACAATACATTT-TC--CCCTTCACTA-CC-TCA---GCTTTCAAACA-TTATAAA-A--TGAATCTTTCT-TCT---TGTT-GTTCATTTT-AGGCATCTT-CGACCC-------------------CCCCCCCC-CCCC-CCC------------------CCCCA----AGT---TTT-CCGTTT----TTAT--ATACAATTCATCTGCAAAGAATAGGCTTTT---GT--TTTGA-ACAT-CAAT--TTCTGAGT----TCTT-CCAGTCTTGCTCTAATATC-TAAATTTATGA--AG-TATTTGTTA-CAA--AA--TAAATGA--ACA-TAAA-TAAAT--TCTAATTGTT-GAG--TTTAAA-AAATCTTCTGAC---CAACA-T-TTGT-ACTAT-TGGCT--AACT--G-AAACTTTG-----CA-TTCTTTT-ACAA-T-CT--T--GCAGTC-A---TT--GAA--TATAGTGC-ATT-GTGTTTGT--GCTCT---G-G-CA--GGTAA--TA-TTT-CCAAAAG---AGA----TCA--AA---A--AC--CCTGCAA--ATA--TGTAATTGTT-GT-A----AAAG----T-TTTATA--AGT-ACTACA-AATT-GCCC-CT-AA---TGA-TTT-TA-T---GA---CATA------------ATACTTTA---GATAC-T--GC-------G--CATA----GCAAAAAA-TATGTAAAAGTCGATCTGAT-CATAATTTT-A--T-CACCAT-ACTATGTTGTACA-TAATGATTT-C-GTT-ATGCATCAGGCCTGATGCAT-GCCATACACT-ATAAG-ACAAATTTTAT-------CACATCCAGC-TC---TTGTACAAAATTCAGATT-CATTGC-ACACGCCACA-TTTAGTTTATTTT-CCACAGACATCAG-----AAGT-AT-GT-AATTAGGAGGTT-ATCCGTA--TACGTTACGTACC----TAG-ATCTTATACA-TATATAA-GTA-CCTCTCTC-TCTCTCTACCC--CCCCCCTTTT-TTTTTTT-TAAA-CCAAATA--ACACTTTTTT--GAA---TCCCGTTCATCTCAAAACTT-ACAGCCAGAAAC-GGCCCCGC-AAGCGACTT-AATGAAGGTGAATGG-GGGGAAATCTATGTCATT-GTT-TTCATCA-TTTACGTTTC-ATTTAGGTTGAAGG-GTGCG-----TGTGTGTGTGTGTGTGTGG-GGGGGGGGGGGGTGGTATGTGC--ATAAGAC--GCTCATTCTCA--GTC-AGAAACTTATGCATG-TACTATTATCT-AA-TACACA-CTGT-CAC--AGTTAAATTTACA--TTCAT-TTGATTGAAT-AAAACAAAC--TTACATTTGAA--ACG---ATCGATCT-GTTT-T--CTCTCGTTGT--A-TA-TTGCAACTGC-A--ATGGGG---CTACAGCTATTACA-GCGCACAGCA--AAACAATTAT-TTTTCTGTGAC-TTTTG-TT-CTG-AAA-TGGGGTA-ATCATTC-ACTCCC--TACTAGCCTTT-CTGGATA-CCGT--G-TGTCACTGTTACA-TTTCCCCCATGGC--GCAG-G-TTTCTC-ACAATTTTTCAAGCGAATTCAAAGCATTTCG--TTT-AAAACATCTGC-ACTCT-AACACCTCCACCATG-TGCAGCCATCGGTG-TTTTGAACGG-AG--GTCATGG--CGGACAACTTCTCCCGCGATTTCGTGATT---GCGTTGCGGAGATGGTACA-CTCCCA-CTCCCCTGACGACTATGGAAGGtcggtaatagtgtacagttctattatgaacattagagaacattttcaaaatcaaatattaa
gi|23 : AAAG----T-TTTATA--AGT-ACTAAA-AATT-GCCC-CTAAA---CGA-TTT-TA-T---GA---AAAA------------ATACTTTA---GAT---------------------------------A-TATGTAAAAGTCGATCT-AT-Ct
gi|26 : TTG-GCTGTGCGAAGATGGTA-A-CTCCAC-CTTCCCTGACGAC-GTGGAAG
gi|27 : aTA-A-CTCCAC-CTCCCCTGACGAC-GTGGAAGcat
gi|28 : TTG-GCTGTGCGAAGATGGTA-A-CTCCAC-CTctg
gi|3 : TTATAAATAAATGAAT-TATGTATCATAATGT------ACATT-A---------CGGCCC-------------------CCCCCCCC-CCCC-CCC------------------CCCCt
gi|3 : actcttccacgctccgccactggatggcaacgtcacacgcgtgtttacagactcgtcaacttgcatgtaaacaacatggcgcgcgatgtccgctcttgcaccgggtatcatgttaagtcgccttcgtttgaaccacgaaattttacagaaaagttgtccaaaggatctgacacccttctgagaaagttacgttcacaaaatttcactgagtaaaatcgcagaaacacaattgtaaaacgtgtgcaactagatgctttcgtagcatgaattgcattgttattacagtggcagaaatggtgtagaacaaattgtcccaatattttaacagagagctactgttctgaggctagtgcacagatgggtaaacacggtgcaattattgagtttaaattgttttgttaaggaatttaaaatggttgtttagttaaaaactgaataaaaaataggctatatttgcgcgttttaccgttcttttaatttttataaatgtttcatctgcttttaactaaaatcaccatcttccaaatgtgaaactatcaattgtttaagattttaaggacaagtatcccccttttccccccaggctaccctaatccaatatatttctataaatacacccgtccacacaaatccaacggatggggggAAATGCCAAA-ATCATT--AAACTCGACA-AAA--CA-GC---ATGCACATTAA--GTA--AG-T-AC--AAAACAAT-T-TTTTTTAAAC-------AT---ATC---CATATATGCACC---A---CATAACCCATAGTATT--AGA--GCAT--AAAAAACA---ATGA--GGGA-TC-ATAAAT-GAAATT----GGG-TCAATAGCAA-GGGGAGCACTGCTG--GATCTAG-AG------GGGACAATACATTT-CC--CCTT-CACTCAC--TCA---GCTT-CAAACA-TTATAAA-AA-TGAATCTTCTT-T-----TGTT-GT-CATTTT-AGG-ATC------------------------------CCCCCC-CCCC-CCC------------------CCCAAG---------TTTTCCGTTTATA-T-ACAAATACAATTCAT-TGCAAA-AATAGGC-TTT---G----TTGA-AC---C-ATCATTCTGAGTCTCATCTT---AGTCTTGCTCTAATATC-acacgtattaaaaatacagtagccaattaaagatagcattcctgtggggtcaatggaactgaatctaactcaaagacaagatacattaagtcatacggcaaagaatatttatcatcaaaattgatcaatgccacaagtgttgaaatataaaactttttgaattccaaataatgttctgctgcctcatcagtgttaaaataattggcaaattcttttgtcatgtccctccttctttacatacttgggaacttgcaacagatacaaacttccaacaaagtacatgttgcagttcaattggtaatatcaaatcagccttcataagtgggtatttttttccattgtaagtagaatattgtttttggtacaaagggatagctttgttgatagggttgatctaataactggagttgatgatgattcagtctgaggtatgctctgttgatgaagagtgtggtttttgactaaaaaatgctgctgtaccaagtattctcaaatgaattgtaaacaaagacagaatattttttaatactgtgcaaaatgccaaaatcattaaactcgacaaaacagcatgcacattaagtaagtacaaaacaattttttttaaacatatccatatatgcaccacataacccatagtattagagcataaaaaacaatgagggatcataaatgaaattgggtcaatagcaaggggagcactgctggatctagaggggacaatacatttccccttcactcactcagcttcaaacattataaaaatgaatcttcttttgttgtcattttaggatcccccccccccccccccaagttttccgtttatatacaaatacaattcattgcaaaaataggctttgttgaaccatcattctgagtctcatcttagtcttgctctaatatc
gi|4 : actcttccacgctccgccactggatggcaacgtcacacgcgtgtttacagactcgtcaacttgcatgtaaacaacatggcgcgcgatgtccgctcttgcaccgggtatcatgttaagtcgccttcgtttgaaccacgaaattttacagaaaagttgtccaaaggatctgacacccttctgagaaagttacgttcacaaaatttcactgagtaaaatcgcagaaacacaattgtaaaacgtgtgcaactagatgctttcgtagcatgaattgcattgttattacagtggcagaaatggtgtagaacaaattgtcccaatattttaacagagagctactgttctgaggctagtgcacagatgggtaaacacggtgcaattattgagtttaaattgttttgttaaggaatttaaaatggttgtttagttaaaaactgaataaaaaataggctatatttgcgcgttttaccgttcttttaatttttataaatgtttcatctgcttttaactaaaatcaccatcttccaaatgtgaaactatcaattgtttaagattttaaggacaagtatcccccttttccccccaggctaccctaatccaatatatttctataaatacacccgtccacacaaatccaacggatggggggggggggggggggggggggggggccgtaatgtacattatgatacataattcatttatttataaacacgtattaaaaatacagtagccaattaaagatagcattcctgtggggtcaatggaactgaatctaactcaaagacaagatacattaagtcatacggcaaagaatatttatcatcaaaattgatcaatgccacaagtgttgaaatataaaactttttgaattccaaataatgttctgctgcctcatcagtgttaaaataattggcaaattcttttgtcatgtccctccttctttacatacttgggaacttgcaacagatacaaacttccaacaaagtacatgttgcagttcaattggtaatatcaaatcagccttcataagtgggtatttttttccattgtaagtagaatattgtttttggtacaaagggatagctttgttgatagggttgatctaataactggagttgatgatgattcagtctgaggtatgctctgttgatgaagagtgtggtttttgactaaaaaatgctgctgtaccaagtattctcaaatgaattgtaaacaaagacagaatattttttaatactgtgcaAAAAAA---ATGA--GGGACTC-ATAAAT-GAAATT----GGA-TCAATA-TCA-GGGATGCGGTGCTG--GATCTAG-AG------GGGACAATACATTTTCC--CCTCTCACTAACC-TCA---GCTTTCAA-CATTAGTAAA-AATCGAATCTTT-T-TC----TGTTTGT-CATTT--AGGCATCTTTCGACCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCGT---TTCCCCCCCCCATTT-GT--ATACAATTCATCTGCAAAGAATAG--CTTT---GT--TTTGA-ACAT-CAAT--TTCTGAGT----TCTTCC-AGTCTTGCT-TAATATC-TAAATTGATGA--AG-TATTTGTTA-CAA--AA--TAAATGA--ACA-TAAA-TAAAT--TCTAATTGTT-GAGTTTTTAAA-AAATCTT-TGAC---CAACATT-T-GT-ATCGTATGGCT--AACT--GCAAACTTTG-----CA-TTC-TTT-ACAA-T-CTTCT--GCAGTCAA---TT--GAAATTATAGTGC-AT--GTGTTTGT--GCTCGT--G-G-CA--GGTAA---A-TTGACCAAAAAGC-AGA----TCA--AA---G--AC--CCTGCAA--ATAG-TGTAA-TGTT-GT-A---CAAAG----TCTTTATAC-AGTAACTACA-AATT-GCCC-CT-AAC--TGACTTT-TACT---G-----AAC------------ATACTTTA---GATATAT--GC-------G--CATA----GCAAAAAA--ATGTAAAAGTCGATCTGATCCATAATTAATA--T-CACCATAACTATGTTGTACATTAATGATTTGC-GTTAGTGCAACAGGCCTGATGCATCGCCATACACTAATAAG-ACAATTTCTAT-------CACATCCAGC-TC---TTGTACAAAATTCA-GTT-CATTGCAACAC---CCACTTTACTTTA-TTT-CCACAGACATCAG-----AAGT-ATCGTCAATTAGGA-GTTAAT-CGTA--TACGTTACGTACC----TAGAATCTTATACA-TATATAA-GTA-CCTCTCTCTCCTTCTTACCCCTCCCCC--TTTGTTTTTTT-TAAACCCAAAT---ACACTTTTTTGGGAA---TCCCGTTCATCTC-AAACTT-AC-G-CAGAAACTGGCCCCGCAAAGCGACTGAAATGAA--TGAATGGTGGGGAAATCTATGTCATTCG-TGTTCATCATTTTACGTTGCAATTTAGGTTGAAGGTGTGCG-----TGTTTGTGT-TGTGTGT-GTGGGGGGGGGGGGTGGTATGTGCATATAGGACGT-CT-A-TCTCA--GTCAAGAAACTTATGCATG-TACTATTATCT-AATTACACAGCTGT-CAC--AGTTAAA-TTACAT-TTCATCTTGATTTGATAAAAACAAACTATCACATTTGAA--ACGGTCATCGATCTCGTTTCT--CTCTCGTTGT--AGTA-TTGCAACTGCAA--ATGGGGCGCCTACAGCTAT--TACA-GCACAGC---AAACAATTA--TTTTCTGTGACTTTTTG-TTCCTGAAAA-TGGGGTATATCA-TC-ACTCCCTTTACTAGCCTTTCCTGGATA-CCGTTCG-TGTCA-TGTTACAGTTT-CCCCATGGC--GCAGCGTTTTCTCAACAATTTTCAAAGCGAATTCAAAGCATTTCAGTTTT-AAAACATCTGC-A--CT-AACACCTCCACCATGTTGCA-CCATCGGTG-TTTTGAACGG-AGGCGTCATGGGCCGGACAA-TTCTCCCGCGACTTC-TGACTTGCGTTGCG-GAAGATGGTA-ACCTCCTCACTCCCCTGACGAC-ATGGAGG
gi|5 : gcatttgAT-AC--AG--CAATATATCTTTTAAAA-------AT------A-GCACATAT-TACCTAAAA-C--TAACCC---GTGTT---------ATCTAAATGA-------GA--GGGGCT--ATAGAT-TAAATT----GGGGCCAATAATCA-GTGATGCAGTGCTG---ATGTAA-AG------GGGACAATAAATCT-AGAACTTGTCACCAACC-TCA-AAGCTC---AACACTTATAAA-GAATGA-----TAT-TCA-AATGTT-GT-CATTT--ATG-ATCTT-CGACAC-------------------CCCTCCCC-CCC---------------------------AGTGTAGT---TTTTCCGTTC----T-AC--ATT---TTTAT-TGCAAA-AATAGGCTT-----GT--T---A-AC---CAATCATTCTGAAT----C--T-C-AGTCT-GCTGTAATATC-TAAATT--TGA--AGCTATTTGTTA-CAAGAAA--TAA-TGA--ACA-TAGA-TACAT--T---ATTATT-GATC-TTTCTA-AAATCTT-TGAC---CAACA-G-T-GT-G--AT-TGGCT--A-CT--G-AAACGATT-----CAGTTCTT-----AACT-CT--T--GCAGTC-A---TT-----------------T--GTGTGTAT--GCT--T--GTG-CA--GGTAA--TA-------GAATG---ATA----TC----------------CTGCAA--ATACATGTA-----T-GTGA---TAAAG----C-TT------AGT-ACCATA-A-TT-GACC--T-AAAGATGA-TTT-TAGT---GA---CAAAAATGTTTTAGATATGCGTTAAGTGAAAT-T--GTTTTTATAGATCATGAAGGGCAAAAAAATATATGAAGTCCGATCTGAT-CATAATCTTAAATTACACCAC-A--ATGT-GTATA-TAAT--TTT-CTGTTAATGCAATAAGTCTGAT---T-GC-GTTCACA-GTAAG-ACACATTGTATACACATGCACATCCAGCCTCAGATTGTACAAGATTTAGGTTGCATAAC-A-ACG--ACA-TT-ATTTTATATCACCA-AGGCACCAACCAGAAAGTGAT-GT-CA-TAGGA-GGT-AT-CGTAAATACGTT---TACTAGAGTAG-AT--TATAAAACACATAATGTAACC-----C-CCTCCCCAGCC--CTCCC--TTT-TTTTTC----AA-CCAAAT---CAATTTTTTT--GGACCATCTCGGTCATCTC-AAACTTTACAG-CAGAAACTGGCATGGCAAAGCGACGT-AATGAAGGTGAATGG-TGGTAA--TTGTTTCATT-T-T-TAAAATA-CTTACTTTTC-ATGTGGGT----GG-GTGCG------GTGTGT-------------CGGGAGGGTGGGTGGTAT-TGC--ATAAGACGTGCT-ATTCTCAAGATT-AGAA--CTAAGCAGGTTACTATTAAGTAAA-TAC-CA-CTGT-CAC--AG-TAAA-TTACA--ATCACATTGATT-GAT-AAAACAAAC--TTACATTTGAATGACG---TGTGATCT-GTTT-TA-TTCTCATTGA--A-TA-TTGTAACTGC-AGCACGGGG---CCCCGGCAAT--GG-G-GCTCAGCAGTAAGCAATTA--TTTTCTGTGA---TTTGCTT-CTG-CAATTGGGGTA-ATC-TTC-A--CCC--TA-TA-TCTTT-C-GGGTACCCGT--GTTGTCACTGCTA----TT-CCCCCT-GCTGGCAG-G---TCTT-ACAA--GTTCAAGCGAATCCACA--ATCTCG---TT-AAGACATCTGC-A-TCT-AACA--TCCACCATG-TGCA-CAATAGGTGTTTTTG--CGGAAG--GTCATGG--CGGACAA-TTTTCCCGCGATTt
gi|6 : ggttgatctacataactggagttatgatcgattcgtatgctctgttgatgacgagtgtgatctctttagctaaaaaattctgctgtaccaagtatatccaaatgaatcgtaaaaaaaaaaccgacaagaatatttttttaatatgtcaaatgccaaatcaA--AA--TAAATGA--ACA-TAGA-TAAAT--TCCA-TTGTTTGAG--TTTAAA-AATCTTT-TGAC---CAACA-T-T-GT-AT-AT---GCT--A-CT--G-AAAACTTG-----CA-TTCTTTT-ACAA-TTCT--T--GCA-TC-A---TT--GA-----CAGT----------TTTGT--GCTCTT--GTG-CA--GGTAA--TA-TTT-C-AACAG---AGA----TCA--CA---A--AC--CCTGCAA---TA--TGTAATTGTT-GT-C---CAAAG----T-TTTATA--AGT-ACTACA------------T-AA---T---TTT-TAAT---GA-----AA------------ATACTTTA---GATAT----GC----------CATA----GCCAAAAA-TATGTAAAAGTCGATCTGAT-CATAATTTAAA--T-CACCAT-ACTATGTTGTACA-ATATGATTT-C-TTTAATGCTACAGGCCTGATGCAT-GC--TACACT-AAAAGCCCACATTTTAT--------ACATCCAGC-TC----TGTACAAAATTCAGA-T-CATTAC-ACACG--ACA-TTTA-TTTATTTT-CCACAGACATCAG-----AAGT-AT-G--AA-TAGGA-GTT-AT-CGT---TACGACACGTAGC----TAG-ATCTTATACA--ATATAA-GTA-CC-CTCT---------------CCCCC--TTT-TTTTTTTAAAAA-CCAAATACAACATTTTTTG--GAA---TCCCCCGCATCTC-AAAC-T-ACAG-CAG-AACTGGCCCCGCAAAGCGACTT-AATGAAGGT-AATGT-GGGGAAA-CTAAGTC-TT-G---TTCATTA--TTACGTTTC-ATTTAGGTT--AAG-GTGCGTGTGTTGTGTGTGTGTGTGTGT-G-GGGGGGGGGGGGT--TATGTGC--ATAAGACGTGCT-ATTCTCA--GTC-AGAAACTTATGCA-G-TACTAATTTCT-AA-TACACA-CTGTCCACAAAGTTAAA-TTACACTATCAT-TTGATT-GATAAAAACAAACG-TTACA-TTGAA--ACGT--GTCGATCT-GTTT-TTCCTCTCGCTTTAAA-TACTTGCAACTGC-A--ATGGGG---CTACAGC--T--C--A-GCAC-GT---AAACAATTATTTTTTCTGTGAC-TTTTG-TT-CTG-AAA-TGGGGT---TAATTCAACTCCT--CCCTAGCCTTT-CTGGATA-CCGT--G-TGTAGCTGTTACA-TTTACCCCA--GC--GCAG-G-TTT-TC-CCAATTTTTCAAGCGAATTCAAAGCATTTCG--TTTAAAAACA-CTGCAA-TCTAAACACCTCCACCATG-TGCA-CCATCGGTG-TTTTG-ACGG-AG--GTCATGG--CGGAGAA-TTCTCCCGCGA-TTC-TGA-TTG-GCTGTGCGAAGATGGTA-A-CTCC-C-CTCCCCTGACGAC-GTGGGAAG
gi|7 : acATGCCACACAT-AGTGGCAA-TGGACACAAGTGCATGCTCAAC--ACTATAA--GTATTAGATGACTTAAA-T--T-T-TTTTTTAACATCTTGTCATGTAAT-A-TTATGTAC-CACA---AC-CCCTAACCCATTGTATTTA-GAAG-CACCTAACAAAAA----TGAAGGGGACTCGATAAATAGAAATTCGACGGGTTTAATGATCA-GGGATGCATTTTCGTGGATCTATTAGACTTCTGGGACAATACATTC-CC--CAGTTCACTAACCCTCTTA-TCCTTCAA-CATTTATTAA-AAATGGATCTTCCT-TCA---T-TT-GT-CATTTTTAGG-ATTTT-TGACCC-------------------CCCCCCCCACCCCACCCCTG---------------CCCCAAC-C-GCCCATTCCCCCCCC----T-CC--CTCC----CAG-TG-----AATAG--TTTTCCCGTTCTTTGATATATATAATC-------------TCCT-C-AA-ATTGC--AAAAATCTTAAATTAATGAACAG-TATTTGTTACCAA--AAACTAAA-GACCACATTAGATTAAGTGGTTTTATTGTT-GAG--TTTAAAGGAATC-T-TGACCATCAACA-TAG-GTAATTCC-TTTCTTCAACTTGA-AAACTTTGTCGATTA-CTCTCTTAATAAGT-CA--TCCGCAGTC-AATGTTTAGAAC-TAT-GTGCAATAGATGTATGCTAGCTCCTGGGTGTCAGGGGTAAATCACTTT-TCAAAAACGCAGATTCCTCATTAATTTACCACAACCTGCAATGATA--TGTACTTGTTGGT-AACTCCAAGCTTTT-TTTATAGGAGT-ACAACACAATTAGCCCACT-AAAC-AGA-TTTCTA-TCCGGAAACCAAA------------ATACTTTA---GTTAT-TTAG--------G--TATA----GTAAAcgtg
16 sequences could not be aligned to this reference sequence:
Unaligned ( gi|8 ): ATCGTTAATCGCTCGTATTTTTACCTGCGGATATATTTCACAGACAATCAGTTTGTCAAAAGACTCTAGACCCAACTTGCTCGCCAGAAAAGTTACTGTCTAGTTCAACAAATTTCACTCGCTAGTAAACGCAGAAGTAGCAACGAAATTGTGAAACCTTGCGTGCACTAGATGCTTTCGTTAGCATGATGTTACATTGGCATGTTATTTGTGCAGAAATGTTGTAGAACAAATTGTCCAATATTCATTCAGAGCAGCAACAATTCTTGCAGCTAGTGCCCAGATGCGATACCAACATTGTATTTCATTTTGTTATTTGGGATTTTA
Unaligned ( gi|9 ): CTCTTCTCACCGCTCCGCCTACTGATGGCAACGTCACATTCGCGTGTTACAGATCCTCAAGCTTGCATTAAACAACATGGCGGCGATGTCGATCTTGCACGGGTATCATGTAATCGCCTCGTTTGGCACGAATTCTTCACAGAAAGTTTGTCAAATAGGATCTGCACATTACTTCATGAGAAAGTTACCGTTTCAAAAAGTGTTCTACTGAGAAAAAGAACGCATGAAACAGCAATTGTAATCAACTGGCCACTGGGATGCTTTCCGTAGCCTGAATGCCATGTTATTACCAGTGTGCATGAAATGG
Unaligned ( gi|10 ): TTTTTAACAGCAAAGTTTGTCAAAGGATCTGACACGTTCAGAGAAAGTTGCGTTCACAAAATATTTCAATGAGTGAAAAACGCAGAAAACAGTTTAAACGTGTGCACTAGGATGCTTTCGTAGCAATGATTATATTATTGTGTGCAACGAGATGGCTGGCAGAACAATATTGTCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTCACAGAAATGGGTAAACTACGGACACCAATTTCGAGTTTATTGTTT
Unaligned ( gi|11 ): CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCGCCCCCCCCCCCCCCCCCCCCCCCCCCCCCACCCCCCCCCCCCCCCCCCCCCCCCCCCCAATGAAAATATGTATTAAAAGTTATGAAATTCATTCTTATCACAGTTTATTTCTAAAATAGTGAATTTCAGAACAAAAAGTCTGCACTAAATGAACAATATTATATAAATTTTGATAAATTTATAACTCTAGCATTGAAACTATTTGTAACA
Unaligned ( gi|12 ): TCACTCTTCCACGCTCCGCCCACTGATGGCAACGTCACACACGTGTTTACAGACTCCGTCAACTTACATGTAAACAACATGGCGAGCGATGTCGATCTTGCACCGGGTATATTGTTAATCGTCCCGTTTGACAACGAATTTTCACAGAAAAGTTTGTCAAATGATCTGACATACTTCAGAGAAAGTTACTTACGTTCACAAAATTTCACTGACTAAAA
Unaligned ( gi|13 ): CCCCACCCCCCCCCCCCCCCCCCCCCCCCCCCCCTCCCCCCCCCCCCCCCCCCCCCCCCCCCCTTTTCACCTACATATTTATAGTACATGTATTGATAACATGAAAGGTATATTATTGCAATTGATATCACAATATTTACGTATTCTAATAACAACCTTGACCTTATTGACTTAGAAATTGATGCGTAGCATCATATCT
Unaligned ( gi|14 ): CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCACGCCCCCCCCCCCCCTTTAATTTGTGCCAACTTCTTAAAAGTATACTTTTATCATACTTGCATATCATTTTTTATTTTAACATTTCAATATAAATTCATCAATCTTTATTTCATAATTAAT
Unaligned ( gi|16 ): CCCCCGCCACCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCTTAAGTATTTCACAATACACATTCACACCGAATAAATATATCTGTATTGACAAAGTTCGTTGATATCACGGAGAAATAT
Unaligned ( gi|17 ): ACTCTTTCCACGCTCCGCCCACTGATGGCAACGTCAGCACGCGTGTTTACAGACTCCGTCAACTTTACACTGTAAAACAACATGGCGATCATGTCGAATCTTGCACGGGTCATC
Unaligned ( gi|18 ): ACTCTTCCACGCTCCGCCCACTGATGGCAACGTCACTCACGTGTTTACAGACTTCGTCAGCTTACATGTAATTAACATGGCGAACGATGTCAATCGTGCATCGGGTACC
Unaligned ( gi|19 ): TTGGTATAAGTTTTTTCTATTGTAAATAGATATATTGTTTTTGCTGGTAAAAGGAATATCTTGTTGATAGGTTGGATCTATTATAAACTGG
Unaligned ( gi|20 ): GATTTAAAAATGTTTAGTTAAAAAATCCTGAATAAAATAGGTATATATTTGCTGCGTTACCGTTCCACTTATAAATGTTTCATTGCTTTC
Unaligned ( gi|21 ): CCCCCCCCCCCCCCCCCCCCCCTCAGCTAAATTCACCCAGATCTGTGGTTATAATTGGTAAGAAAAGTTTAGTGGATATCTCAATA
Unaligned ( gi|22 ): CCCCCCCCCCCCCCCCCCCTTTTTACCCTCAGCGGGATATTTTTTTATTGACATTGTATTAGATAAATTTTGGAAGGTAT
Unaligned ( gi|24 ): CACTCTTCCACGCTCCGCCCACTGGAGGCAACGTCACACACGATGTTTACAGACTCCGTACAACTTACATG
Unaligned ( gi|25 ): ATTCACTCTTCCACGCTCCGCCCACTCCGTCAACTTACATGTAAACAACATGG
Alignments
lowQualScore : 1 111 1 1 33333333 11 11 222 222 666666666666666666 22 22 111 55555555 3333333 11 1111 1 111 111111 22222 333 1 1 2222 11 11 3333333333333333 1111 999999999999999999999999999999 22222 1111 1 1 111111111111111 222 11 222222222 2 1 11 1 1 11 11 11 11 11 111 111 11111111 1111 1111 22222 1 11111 111 555555555555555555555 11 111111 11 22222222222 222 1111 333333333333333 111 11 11 222222 111111 11 222 44444444444444444444444444 111 5555555555555555 1111 1 11 11 1 1 1 1 1 11 1 1 33333333 1 2222 1 1 111 1 1 1 22222 1 1 11 1 1 1 111 2222 1 11 1 1 1 111 11 11 1 111 1 222 11 111 1 1 1 1 1 11 22222 11 1 111 1 222222 111 11 1 11 1 1 1 1 1 1 11 1 333 2 1 22 11 2222 1 2222 1111 1 1111 111 444444444 3333 22 11 1 1 1 1 11 1 11 1 1 11 1 1 2 11 11 1 11 1 111 1 1111 1 1 1 1 1 1 11 11 1 1 1
lowQualScore : 3 6 999 3 3 7 99999999 88 88 0 8 000 777 0 111111111111111111 4 8 00 88 777 88888888 66 9999999 99 33 6 4444 3 6 1 6 0 0 555 6 999999 44444 1 6 555 5 7 2 5 5 8888888 5 7777 5 5 44 2 00 0 5 3333333333333333 0000 5 77 888 222222222222222222222222222222 4 5 33333 77 3333 3 3 666666666666666 6 555 33 222222222 6 6 0 33 0 0 11 11 11 11 8 8 11 3333 8 99 8 0 8 444 999 66666666 2222 2222 00000 8 0 0 8 6 8 33333 8 444 666666666666666666666 1 11 666666 8 11 22222222222 555 7777 333333333333333 111 99 11 8 111111 444444 55 6 999 6 99 6 777 6 6 99999999999999999999999999 111 1111111111111111 4444 88 8 0 00 33 0 2 3 0 2 0 0 3 2 0 99 0 0 1 0 55555555 0 0000 333 0 0 2 666 0 3 0 3 0 2 55555 0 0 33 66 0 0 0 777 3 1111 0 2 77 0 0 5 222 1111 2 33 33 0 666 0 333 2 33 777 0 0 3 0 3 0 3 3 3 0 2 2 0 22 3 99999 77 0 555 0 888888 2 8 666 2 2 33 2 2 0 3 33 0 3 9 0 0 0 3 0 0 33 3 0 000 0 0 9 33 3 33 8888 0 4444 4444 0 4444 777 555555555 3 4444 55 22 0 0 0 0 33 66 0 2 33 2 2 0 3 0 33 0 2 2 0 0 22 33 0 33 2 0 3 2 777 0 3 4444 0 2 0 0 0 5 0 33 33 0 7 3 2 0 8 6 6 888 8
lowQualScore : . . ... . . . ........ .. .. . . ... ... . .................. . . .. .. ... ........ .. ....... .. .. . .... . . . . . . ... . ...... ..... . . ... . . . . . ....... . .... . . .. . .. . . ................ .... . .. ... .............................. . . ..... .. .... . . ............... . ... .. ......... . . . .. . . .. .. .. .. . . .. .... . .. . . . ... ... ........ .... .... ..... . . . . . . ..... . ... ..................... . .. ...... . .. ........... ... .... ............... ... .. .. . ...... ...... .. . ... . .. . ... . . .......................... ... ................ .... .. . . .. .. . . . . . . . . . . .. . . . . ........ . .... ... . . . ... . . . . . . ..... . . .. .. . . . ... . .... . . .. . . . ... .... . .. .. . ... . ... . .. ... . . . . . . . . . . . . . .. . ..... .. . ... . ...... . . ... . . .. . . . . .. . . . . . . . . . .. . . ... . . . .. . .. .... . .... .... . .... ... ......... . .... .. .. . . . . .. .. . . .. . . . . . .. . . . . . .. .. . .. . . . . ... . . .... . . . . . . . .. .. . . . . . . . . ... .
lowQualScore : 3 7 333 3 3 3 00000000 33 33 8 0 888 000 6 222222222222222222 6 0 88 66 000 99999999 88 8888888 22 33 7 2222 3 7 7 7 7 7 888 7 222222 33333 5 7 555 5 3 0 7 1 4444444 7 4444 7 7 44 5 11 1 0 1111111111111111 6666 0 55 888 777777777777777777777777777777 0 7 99999 99 6666 3 3 333333333333333 7 222 88 777777777 7 7 8 88 0 0 00 00 66 00 0 0 00 8888 0 00 0 8 0 000 888 00000000 6666 2222 00000 0 8 8 0 0 0 00000 0 000 222222222222222222222 0 00 000000 0 00 22222222222 000 0000 888888888888888 888 00 22 0 000000 333333 88 7 000 7 22 7 555 7 7 77777777777777777777777777 777 7777777777777777 2222 88 0 0 88 88 0 5 2 0 5 0 0 2 5 0 22 0 0 0 8 00000000 0 8888 888 0 0 5 222 0 2 8 2 0 5 00000 0 0 22 55 0 0 0 000 2 2222 0 5 00 0 0 5 888 5555 5 88 88 0 888 0 000 5 88 555 8 0 2 0 2 0 2 2 2 0 5 5 0 55 2 55555 00 0 000 0 222222 5 8 222 5 5 88 5 5 0 2 88 0 2 2 0 0 0 2 0 0 88 2 0 000 0 0 8 88 2 88 8888 0 8888 8888 0 8888 555 000000000 5 5555 55 55 0 0 0 0 22 55 0 5 88 5 5 0 2 0 88 0 5 5 0 0 00 88 0 22 5 0 2 5 000 0 2 2222 0 5 0 0 0 5 0 88 88 0 0 3 0 8 0 7 7 333 0
consensus : AAATGCCAAA-ATCAGTN--AA-TGGACA-AAGCAGCACGC-----ACTTTAA--GTA--AGAT-ACAGA-CAATATATTTTTTAAAA---------ATAATCAG-CACGTAT-CACCTAAAAC-ATAACCCATTGTATTTAAGAAGGCATCTAAAAAAAA-----TGA--GGGACTC-ATAAAT-GAAATT----GGG-TC-AATAATCA-GGGATGCGGTGCCG--GATCTAG-AG------GGGACAATACATTT-CC--CCTTTCACTAACC-TCA-A-GCTTTCAAACACTTATAAA-AAATGAATCTTTNT-TCA-AATGTT-GT-CATTTT-AGG-ATCTT-CGACCCC----------------CCCCC----CC-CCCC-CCC---CCCCAGC---------------------CAGT---TTCTCCG-TTC----TAC--ATNCAATTCAT-TGCAAA-AATAGGCTTTT---GT--TTTGA-ACAT-CAATCATTCTGAGT----TCTT-CAGTCTTGCT-TAATATC-TAAATTNATGA--AG-TATTTGTTA-CAA--AA--TAAATGA--ACA-TAGA-TAAAT--TCTAATTGTT-GAG--TTTAAA-AAATCTT-TGAC---CAACATT-TGT-ATTAT-TGGCT--AACT--G-AAACTTTG-----CA-TTCTTTT-ACAA-T-CT--T--GCAGTC-A---TT--GAA--TATAGTGC-A-T--GTGTTTGT--GCTC-T--GTG-CA--GGTAA--TA-TTT-CCAAAAG---AGA----TCA--AA---A--AC--CCTGCAA--ATA--TGTAATTGTT-GT-A---CAAAG----T-TTTATA--AGT-ACTACA-AATT-GCCC-CT-AA---TGA-TTT-TA-T---GA---CAAA------------ATACTTTA---GATAT-T--GC-------G--CATA----GCAAAAAA-TATGTAAAAGTCGATCTGAT-CATAAT-TTAAAT--CACCAT-ACTATGTTGTACA-TAATGATTT-C-GTTAATGCAACAGGCCTGATGCAT-GCCGTACACT-ATAAG-ACANATTTTAT-------CACATCCAGC-TC---TTGTACAAAATTCAGGTT-CATTGC-ACACG--ACA-TTTANTTTATTTT-CCACAGACATCAG-----AAGT-AT-GT-AATTAGGA-GTT-AT-CGTA--TACGTTACGTACC----TAG-ATCTTATACA-TATATAA-GTA-CCTCTCTC-CCTCCCTACCC--CCCCC--TTT-TTTTTTT-TAAA-CCAAAT--AACACTTTTTT--GAA---TCCCGTTCATCTC-AAACTT-ACAG-CAGAAACTGGCCCCGCAAAGCGACTT-AATGAAGGTGAATGG-GGGGAAATCTATGTCATT-G-T-TTCATCA-TTTACGTTTC-ATTTAGGTTGAAGG-GTGCG-----TGTGTGTGTGTGTGTGT-G-GGGGGGGGGGGGTGGTATGTGC--ATAAGACGTGCT-ATTCTCA--GTC-AGAAACTTATGCATG-TACTATTATCT-AA-TACACA-CTGT-CAC--AGTTAAA-TTACAC-NTCAT-TTGA-TTGATAAAAACAAAC--TTACATTTGAA--ACG---ATCGATCT-GTTT-T--CTCTCGTTGT--A-TA-TTGCAACTGC-A--ATGGGG---CTACAGCTAT--NA-G-GCACAGCA---AAACAATTA-TTTTTCTGTGAC-TTTTG-TT-CTG-AAA-TGGGGTA-ATCATTC-ACTCCC--TACTAGCCTTT-CTGGATA-CCGT--G-TGTCACTGTTACA-TTT-CCCCATGGC--GCAG-G-TTTCTC-ACAATTTTTCAAGCGAATTCAAAGCATTTCG--TTT-AAAACATCTGC-A-TCT-AACACCTCCACCATG-TGCA-CCATCGGTG-TTTTGAACGG-AG--GTCATGG--CGGACAA-TTCTCCCGCGATTTC-TGACTTG-GCTGTGCGAAGATGGTA-A-CTCCAC-CTCCCCTGACGAC-GTGGAAGG
Reference ( family-1037 ) : AAATGCCAAA-ATCAGTN--AA-TGGACA-AAGCAGCACGC-----ACTTTAA--GTA--AGAT-ACAAA-CAATATATTTTTTAAAA---------ATAATCAN-CACGTAT-CACCTAAAACCATAACCCATTGTATTTAAGAAGGCATCTAAAAAAAAA----TGA--GGGACTC-ATAAAT-GAAATT----GGG-TC-AATAATCA-GGGATGCGGTGCCG--GATCTAG-AG------GGGACAATACATTT-CC--CCTTTCACTAACC-TCA-A-GCTTTCAAACACTTATAAA-AAATGAATCTTTNT-TCA-AATGTT-GT-CATTTT-AGG-ATCTT-CGACCCC----------------CCCCC----CC-CCCC-CCC---CCCCAGC---------------------CAGT---TTCTCCG-TTC----TAC--ATNCAATTCAT-TGCAAA-AATAGGCTTTT---GT--TTTGA-ACAT-CAATCATTCTGAGT----TCTT-CAGTCTTGCT-TAATATC-TAAATTNATGA--AG-TATTTGTTA-CAA--AA--TAAATGA--ACA-TAGA-TAAAT--TCTAATTGTT-GAG--TTTAAA-AAATCTT-TGAC---CAACA-T-TGT-ATTAT-TGGCT--AACT--G-AAACTTTG-----CA-TTCTTTT-ACAA-T-CT--T--GCAGTC-A---TT--GAA--TATAGTGC-A-T--GTGTTTGT--GCTCTT--GTG-CA--GGTAA--TA-TTT-CCAAAAG---AGA----TCA--AA---A--AC--CCTGCAA--ATA--TGTAATTGTT-GT-A---CAAAG----T-TTTATA--AGT-ACTACA-AATT-GCCC-CT-AA---TGA-TTT-TA-T---GA---CAAA------------ATACTTTA---GATAT-T--GC-------G--CATA----GCAAAAAA-TATGTAAAAGTCGATCTGAT-CATAAT-TTNAAT--CACCAT-ACTATGTTGTACA-TAATGATTT-C-GTTAATGCAACAGGCCTGATGCAT-GCCGTACACT-ATAAG-ACANATTTTAT-------CACATCCAGC-TC---TTGTACAAAATTCAGGTT-CATTGC-ACACG--ACA-TTTANTTTATTTT-CCACAGACATCAG-----AAGT-AT-GT-AATTAGGA-GTT-AT-CGTA--TACGTTACGTACC----TAG-ATCTTATACA-TATATAA-GTA-CCTCTCTC-CCTCCCTACCC--CCCCC--TTT-TTTTTTT-TAAA-CCAAAT--AACACTTTTTT--GAA---TCCCGTTCATCTC-AAACTT-ACAG-CAGAAACTGGCCCCGCAAAGCGACTT-AATGAAGGTGAATGG-GGGGAAATCTATGTCATT-G-T-TTCATCA-TTTACGTTTC-ATTTAGGTTGAAGG-GTGCG-----TGTGTGTGTGTGTGTGT-G-GGGGGGGGGGGGTGGTATGTGC--ATAAGACGTGCT-ATTCTCA--GTC-AGAAACTTATGCATG-TACTATTATCT-AA-TACACA-CTGT-CAC--AGTTAAA-TTACAC-NTCAT-TTGA-TTGATAAAAACAAAC--TTACATTTGAA--ACG---ATCGATCT-GTTT-T--CTCTCGTTGT--A-TA-TTGCAACTGC-A--ATGGGG---CTACAGCTAT--CG-G-GCACAGCA---AAACAATTA-TTTTTCTGTGAC-TTTTG-TT-CTG-AAA-TGGGGTA-ATCATTC-ACTCCC--TACTAGCCTTT-CTGGATA-CCGT--G-TGTCACTGTTACA-TTT-CCCCATGGC--GCAG-G-TTTCTC-ACAATTTTTCAAGCGAATTCAAAGCATTTCG--TTT-AAAACATCTGC-A-TCT-AACACCTCCACCATG-TGCA-CCATCGGTG-TTTTGAACGG-AG--GTCATGG--CGGACAA-TTCTCCCGCGATTTC-TGACTTG-GCTGTGCGAAGATGGTA-A-CTCCAC-CTCCCCTGACGAC-GTGGAAGG
gi|1 : AT-ACAG--CAATATATCTTTTAAAA---------ATA----G-CACATAT-TACCTAAAAC--TAACCC---GTGTT---------ATCTAAATGA--------GA--GGGGCT--ATAGAT-TAAATT----GGGGCC-AATAATCA-GTGATGCAGTGCTG---ATGTAA-AG------GGGACAATAAATCT-AGAACTTGTCACCAACC-TCA-AAGCTC---AACACTTATAAA-GAATGA-----TAT-TCA-AATGTT-GT-CATTT--ATG-ATCTT-CGACACC----------------CCTCC----CC-CCC------------AGTG--------------------TAGT---TTTTCCG-TTC----TAC--ATT---TTTAT-TGCAAA-AATAGGC--TT---GT--T---A-AC---CAATCATTCTGAAT------CT-CAGTC-TGCTGTAATATC-TAAAT
gi|15 : actcttccacgctccgccctgatggcataacagtcatcacgtgttacaagactccgtcaacttacatgtaaacaacatgggtgcatgtcatgcttgcaccgtacatattgtaaatcgcctcgttttgacgacgaattgttcacagaaaagttgtcaaggatctgacacagcttgcagagaaagttacgttcactaaaatttatgagtcaataacgcagaacagcacttgtaaacgggtgctactcatagtctcgatgctttcgtaacatggatgcatgtattatgtgtacagatatggctgcagaaaaactgtcccgatatttttacagagagctacatgctgcagctagctgcatcagatggtaaactacgggaaattaaacgagtttaattttttgtgaggaatttaaaaatgttgttttagttaaaaaacttaataaaatagccctaaaacgtctgcgtttacccgttcccattttataagatgttttcatctgctgtctgcatatttatattgtatttttcagcctaactaatagccacttccacaaatattgaactacattgggatatattaaaaattggttgcttaaagatttatatagtggcattgcatatgtatcccccttttttccaggtctatctccctaatccaatatatatgctaataaaatacacggacggttcgggtggtaacacccgtcacaggcaatcacagaagggaaaaaaactcgtaacgtaattaattatagtaatagttcatttatttgtaaatgccatattgaacacagtaaacttatattttcagccagtttaaagataacatccatgggtcagcaatggaatggaacacacaaacaacatacaagtcaataaggcagataatctttatatcaaagttgatcaatgcatagtgcgattgaaattaaaattcttgtattccaaataattgtattgccctgatcatgttgagaataatgcaattcttttgtcatgtcctccttcttttacgtacttgggaaacttgcacaatcaaatctccaagcaaagtacatgtttgcaaggttaattgtaaaatatatcaaaacacgccttggtattcttttctattgtaaagagaattgttttctgctaaaaaggggaagcttgtgatactgggttgatctacataactggagttatgatcgattcgtatgctctgttgatgacgagtgtgatctctttagctaaaaaattctgctgtaccaagtatatccaaatgaatcgtaaaaaaaaaaccgacaagaatatttttttaatatgtcaaatgccaaatcaT-AGG----TC-CAACCCC----------------CCCCC----CC-CCCC-CCC---CCCCCTC------------------------T---CTCTCTG-TT-----TAT--ATGCGATTC
gi|2 : catgtttttcataataaactcAAATGCCAAA-ATCAGTT--AA-TGGACA-AAGCAGCAC-------ATTTTAACAGTA--AGAT-ACAAA-CAAC---TTTTTTTACA---------ATAATCAGTCATTTAT-CAGC--AAACTATAACC-ATTGTATTTAAGAAGGCA-ATAAAAAAAAACCAATGA--GGGACTC-ATAAAT-GAAATT----GGA-TC-AATTATCAAGGGATGCGGTGGCG--GATCTAG-AG------GG-ACAATACATTT-TC--CCCTTCACTA-CC-TCA---GCTTTCAAACA-TTATAAA-A--TGAATCTTTCT-TCT---TGTT-GTTCATTTT-AGGCATCTT-CGACCCC----------------CCCCCCCCC-----CC-CCC---CCCCA------------------------AGT---TT-TCCGTTTT----TAT--ATACAATTCATCTGCAAAGAATAGGCTTTT---GT--TTTGA-ACAT-CAAT--TTCTGAGT----TCTTCCAGTCTTGCTCTAATATC-TAAATTTATGA--AG-TATTTGTTA-CAA--AA--TAAATGA--ACA-TAAA-TAAAT--TCTAATTGTT-GAG--TTTAAA-AAATCTTCTGAC---CAACATT-TGT-ACTAT-TGGCT--AACT--G-AAACTTTG-----CA-TTCTTTT-ACAA-T-CT--T--GCAGTC-A---TT--GAA--TATAGTGC-ATT--GTGTTTGT--GCTC-T--G-G-CA--GGTAA--TA-TTT-CCAAAAG---AGA----TCA--AA---A--AC--CCTGCAA--ATA--TGTAATTGTT-GT-A----AAAG----T-TTTATA--AGT-ACTACA-AATT-GCCC-CT-AA---TGA-TTT-TA-T---GA---CATA------------ATACTTTA---GATAC-T--GC-------G--CATA----GCAAAAAA-TATGTAAAAGTCGATCTGAT-CATAAT-TTT-AT--CACCAT-ACTATGTTGTACA-TAATGATTT-C-GTT-ATGCATCAGGCCTGATGCAT-GCCATACACT-ATAAG-ACAAATTTTAT-------CACATCCAGC-TC---TTGTACAAAATTCAGATT-CATTGC-ACACGCCACA-TTTAGTTTATTTT-CCACAGACATCAG-----AAGT-AT-GT-AATTAGGAGGTT-ATCCGTA--TACGTTACGTACC----TAG-ATCTTATACA-TATATAA-GTA-CCTCTCTC-TCTCTCTACCC--CCCCCCTTTT-TTTTTTT-TAAA-CCAAAT--AACACTTTTTT--GAA---TCCCGTTCATCTCAAAACTT-ACAGCCAGAAAC-GGCCCCGC-AAGCGACTT-AATGAAGGTGAATGG-GGGGAAATCTATGTCATT-GTT-TTCATCA-TTTACGTTTC-ATTTAGGTTGAAGG-GTGCG-----TGTGTGTGTGTGTGTGTGG-GGGGGGGGGGGGTGGTATGTGC--ATAAGAC--GCTCATTCTCA--GTC-AGAAACTTATGCATG-TACTATTATCT-AA-TACACA-CTGT-CAC--AGTTAAATTTACA--TTCAT-TTGA-TTGAATAAAACAAAC--TTACATTTGAA--ACG---ATCGATCT-GTTT-T--CTCTCGTTGT--A-TA-TTGCAACTGC-A--ATGGGG---CTACAGCTATTACA-GCGCACAGCA---AAACAATTA-TTTTTCTGTGAC-TTTTG-TT-CTG-AAA-TGGGGTA-ATCATTC-ACTCCC--TACTAGCCTTT-CTGGATA-CCGT--G-TGTCACTGTTACA-TTTCCCCCATGGC--GCAG-G-TTTCTC-ACAATTTTTCAAGCGAATTCAAAGCATTTCG--TTT-AAAACATCTGC-ACTCT-AACACCTCCACCATG-TGCAGCCATCGGTG-TTTTGAACGG-AG--GTCATGG--CGGACAACTTCTCCCGCGATTTCGTGATT---GCGTTGCGGAGATGGTACA-CTCCCA-CTCCCCTGACGACTATGGAAGGtcggtaatagtgtacagttctattatgaacattagagaacattttcaaaatcaaatattaa
gi|23 : AAAG----T-TTTATA--AGT-ACTAAA-AATT-GCCC-CTAAA---CGA-TTT-TA-T---GA---AAAA------------ATACTTTA---GAT---------------------------------A-TATGTAAAAGTCGATCT-AT-Ct
gi|26 : TTG-GCTGTGCGAAGATGGTA-A-CTCCAC-CTTCCCTGACGAC-GTGGAAG
gi|27 : aTA-A-CTCCAC-CTCCCCTGACGAC-GTGGAAGcat
gi|28 : TTG-GCTGTGCGAAGATGGTA-A-CTCCAC-CTctg
gi|3 : TTATAAATAAATGAAT-TATGTATCATAATGT------ACATT-A---------CGGCCCC----------------CCCCC----CC-CCCC-CCC---CCCCt
gi|3 : actcttccacgctccgccactggatggcaacgtcacacgcgtgtttacagactcgtcaacttgcatgtaaacaacatggcgcgcgatgtccgctcttgcaccgggtatcatgttaagtcgccttcgtttgaaccacgaaattttacagaaaagttgtccaaaggatctgacacccttctgagaaagttacgttcacaaaatttcactgagtaaaatcgcagaaacacaattgtaaaacgtgtgcaactagatgctttcgtagcatgaattgcattgttattacagtggcagaaatggtgtagaacaaattgtcccaatattttaacagagagctactgttctgaggctagtgcacagatgggtaaacacggtgcaattattgagtttaaattgttttgttaaggaatttaaaatggttgtttagttaaaaactgaataaaaaataggctatatttgcgcgttttaccgttcttttaatttttataaatgtttcatctgcttttaactaaaatcaccatcttccaaatgtgaaactatcaattgtttaagattttaaggacaagtatcccccttttccccccaggctaccctaatccaatatatttctataaatacacccgtccacacaaatccaacggatggggggAAATGCCAAA-ATCATTA--AACTCGACA-AAACAGCATGC-----ACATTAA--GTA--AG-T-ACAAAACAAT-T-TTTTTTAAAC---------ATA-TC---CATATATGCACC----AC-ATAACCCATAGTATT--AGA--GCAT--AAAAAACAA----TGA--GGGA-TC-ATAAAT-GAAATT----GGG-TC-AATAGCAA-GGGGAGCACTGCTG--GATCTAG-AG------GGGACAATACATTT-CC--CCTT-CACTCAC--TCA---GCTT-CAAACA-TTATAAA-AA-TGAATCTTCTT-T-----TGTT-GT-CATTTT-AGG-ATC---------------------------CCCC----CC-CCCC-CCC---CCCAAG-----------------------------TTTTCCG-TTTATA-TACAAATACAATTCAT-TGCAAA-AATAGGC-TTT---G----TTGA-AC---C-ATCATTCTGAGTCTCATCTT--AGTCTTGCTCTAATATC-acacgtattaaaaatacagtagccaattaaagatagcattcctgtggggtcaatggaactgaatctaactcaaagacaagatacattaagtcatacggcaaagaatatttatcatcaaaattgatcaatgccacaagtgttgaaatataaaactttttgaattccaaataatgttctgctgcctcatcagtgttaaaataattggcaaattcttttgtcatgtccctccttctttacatacttgggaacttgcaacagatacaaacttccaacaaagtacatgttgcagttcaattggtaatatcaaatcagccttcataagtgggtatttttttccattgtaagtagaatattgtttttggtacaaagggatagctttgttgatagggttgatctaataactggagttgatgatgattcagtctgaggtatgctctgttgatgaagagtgtggtttttgactaaaaaatgctgctgtaccaagtattctcaaatgaattgtaaacaaagacagaatattttttaatactgtgcaaaatgccaaaatcattaaactcgacaaaacagcatgcacattaagtaagtacaaaacaattttttttaaacatatccatatatgcaccacataacccatagtattagagcataaaaaacaatgagggatcataaatgaaattgggtcaatagcaaggggagcactgctggatctagaggggacaatacatttccccttcactcactcagcttcaaacattataaaaatgaatcttcttttgttgtcattttaggatcccccccccccccccccaagttttccgtttatatacaaatacaattcattgcaaaaataggctttgttgaaccatcattctgagtctcatcttagtcttgctctaatatc
gi|4 : actcttccacgctccgccactggatggcaacgtcacacgcgtgtttacagactcgtcaacttgcatgtaaacaacatggcgcgcgatgtccgctcttgcaccgggtatcatgttaagtcgccttcgtttgaaccacgaaattttacagaaaagttgtccaaaggatctgacacccttctgagaaagttacgttcacaaaatttcactgagtaaaatcgcagaaacacaattgtaaaacgtgtgcaactagatgctttcgtagcatgaattgcattgttattacagtggcagaaatggtgtagaacaaattgtcccaatattttaacagagagctactgttctgaggctagtgcacagatgggtaaacacggtgcaattattgagtttaaattgttttgttaaggaatttaaaatggttgtttagttaaaaactgaataaaaaataggctatatttgcgcgttttaccgttcttttaatttttataaatgtttcatctgcttttaactaaaatcaccatcttccaaatgtgaaactatcaattgtttaagattttaaggacaagtatcccccttttccccccaggctaccctaatccaatatatttctataaatacacccgtccacacaaatccaacggatggggggggggggggggggggggggggggccgtaatgtacattatgatacataattcatttatttataaacacgtattaaaaatacagtagccaattaaagatagcattcctgtggggtcaatggaactgaatctaactcaaagacaagatacattaagtcatacggcaaagaatatttatcatcaaaattgatcaatgccacaagtgttgaaatataaaactttttgaattccaaataatgttctgctgcctcatcagtgttaaaataattggcaaattcttttgtcatgtccctccttctttacatacttgggaacttgcaacagatacaaacttccaacaaagtacatgttgcagttcaattggtaatatcaaatcagccttcataagtgggtatttttttccattgtaagtagaatattgtttttggtacaaagggatagctttgttgatagggttgatctaataactggagttgatgatgattcagtctgaggtatgctctgttgatgaagagtgtggtttttgactaaaaaatgctgctgtaccaagtattctcaaatgaattgtaaacaaagacagaatattttttaatactgtgcaGCATTTGAAAAAAA-----TGA--GGGACTC-ATAAAT-GAAATT----GGA-TC-AATA-TCA-GGGATGCGGTGCTG--GATCTAG-AG------GGGACAATACATTTTCC--CCTCTCACTAACC-TCA---GCTTTCAA-CATTAGTAAA-AATCGAATCTTT-T-TC----TGTTTGT-CATTT--AGGCATCTTTCGACCCCCCCCCCCCCCCCCCCCCCCCC----CC-CCCC-CCC---CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCGT---TTCCCCC-CCCCATTTGT--ATACAATTCATCTGCAAAGAATAG--CTTT---GT--TTTGA-ACAT-CAAT--TTCTGAGT----TCTTCCAGTCTTGCT-TAATATC-TAAATTGATGA--AG-TATTTGTTA-CAA--AA--TAAATGA--ACA-TAAA-TAAAT--TCTAATTGTT-GAGTTTTTAAA-AAATCTT-TGAC---CAACATT-TGT-ATCGTATGGCT--AACT--GCAAACTTTG-----CA-TTC-TTT-ACAA-T-CTTCT--GCAGTCAA---TT--GAAATTATAGTGC-A-T--GTGTTTGT--GCTCGT--G-G-CA--GGTAA---A-TTGACCAAAAAGC-AGA----TCA--AA---G--AC--CCTGCAA--ATAG-TGTAA-TGTT-GT-A---CAAAG----TCTTTATAC-AGTAACTACA-AATT-GCCC-CT-AAC--TGACTTT-TACT---G-----AAC------------ATACTTTA---GATATAT--GC-------G--CATA----GCAAAAAA--ATGTAAAAGTCGATCTGATCCATAAT-TAATAT--CACCATAACTATGTTGTACATTAATGATTTGC-GTTAGTGCAACAGGCCTGATGCATCGCCATACACTAATAAG-ACAATTTCTAT-------CACATCCAGC-TC---TTGTACAAAATTCA-GTT-CATTGCAACAC---CCACTTTACTTTA-TTT-CCACAGACATCAG-----AAGT-ATCGTCAATTAGGA-GTTAAT-CGTA--TACGTTACGTACC----TAGAATCTTATACA-TATATAA-GTA-CCTCTCTCTCCTTCTTACCCCTCCCCC--TTTGTTTTTTT-TAAACCCAAAT---ACACTTTTTTGGGAA---TCCCGTTCATCTC-AAACTT-AC-G-CAGAAACTGGCCCCGCAAAGCGACTGAAATGAA--TGAATGGTGGGGAAATCTATGTCATTCG-TGTTCATCATTTTACGTTGCAATTTAGGTTGAAGGTGTGCG-----TGTTTGTGT-TGTGTGT-GTGGGGGGGGGGGGTGGTATGTGCATATAGGACGT-CT-A-TCTCA--GTCAAGAAACTTATGCATG-TACTATTATCT-AATTACACAGCTGT-CAC--AGTTAAA-TTACAT-TTCATCTTGATTTGATAAAAACAAACTATCACATTTGAA--ACGGTCATCGATCTCGTTTCT--CTCTCGTTGT--AGTA-TTGCAACTGCAA--ATGGGGCGCCTACAGCTAT--TACA-GCACAGC----AAACAATTA--TTTTCTGTGACTTTTTG-TTCCTGAAAA-TGGGGTATATCA-TC-ACTCCCTTTACTAGCCTTTCCTGGATA-CCGTTCG-TGTCA-TGTTACAGTTT-CCCCATGGC--GCAGCGTTTTCTCAACAATTTTCAAAGCGAATTCAAAGCATTTCAGTTTT-AAAACATCTGC-A--CT-AACACCTCCACCATGTTGCA-CCATCGGTG-TTTTGAACGG-AGGCGTCATGGGCCGGACAA-TTCTCCCGCGACTTC-TGACTTGCGTTGCG-GAAGATGGTA-ACCTCCTCACTCCCCTGACGAC-ATGGAGG
gi|5 : AT-ACAG--CAATATATCTTTTAAAA---------ATA----G-CACATAT-TACCTAAAAC--TAACCC---GTGTT---------ATCTAAATGA--------GA--GGGGCT--ATAGAT-TAAATT----GGGGCC-AATAATCA-GTGATGCAGTGCTG---ATGTAA-AG------GGGACAATAAATCT-AGAACTTGTCACCAACC-TCA-AAGCTC---AACACTTATAAA-GAATGA-----TAT-TCA-AATGTT-GT-CATTT--ATG-ATCTT-CGACACC----------------CCTCC----CC-CCC------------AGTG--------------------TAGT---TTTTCCG-TTC----TAC--ATT---TTTAT-TGCAAA-AATAGGCTT-----GT--T---A-AC---CAATCATTCTGAAT----C--T-CAGTCT-GCTGTAATATC-TAAATT--TGA--AGCTATTTGTTA-CAAGAAA--TAA-TGA--ACA-TAGA-TACAT--T---ATTATT-GATC-TTTCTA-AAATCTT-TGAC---CAACA-G-TGT-G--AT-TGGCT--A-CT--G-AAACGATT-----CAGTTCTT-----AACT-CT--T--GCAGTC-A---TT------------------T--GTGTGTAT--GCT--T--GTG-CA--GGTAA--TA-------GAATG---ATA----TC----------------CTGCAA--ATACATGTA-----T-GTGA---TAAAG----C-TT------AGT-ACCATA-A-TT-GACC--T-AAAGATGA-TTT-TAGT---GA---CAAAAATGTTTTAGATATGCGTTAAGTGAAAT-T--GTTTTTATAGATCATGAAGGGCAAAAAAATATATGAAGTCCGATCTGAT-CATAATCTTAAATTACACCAC-A--ATGT-GTATA-TAAT--TTT-CTGTTAATGCAATAAGTCTGAT---T-GC-GTTCACA-GTAAG-ACACATTGTATACACATGCACATCCAGCCTCAGATTGTACAAGATTTAGGTTGCATAAC-A-ACG--ACA-TT-ATTTTATATCACCA-AGGCACCAACCAGAAAGTGAT-GT-CAT-AGGA-GGT-AT-CGTAAATACGTT---TACTAGAGTAG-AT--TATAAAACACATAATGTAACC-----C-CCTCCCCAGCC--CTCCC--TTT-TTTTTC----AA-CCAAAT--CA-ATTTTTTT--GGACCATCTCGGTCATCTC-AAACTTTACAG-CAGAAACTGGCATGGCAAAGCGACGT-AATGAAGGTGAATGG-TGGTAA--TTGTTTCATT-T-T-TAAAATA-CTTACTTTTC-ATGTGGGT----GG-GTGCG------GTGTGT-------------CGGGAGGGTGGGTGGTAT-TGC--ATAAGACGTGCT-ATTCTCAAGATT-AGAA--CTAAGCAGGTTACTATTAAGTAAA-TAC-CA-CTGT-CAC--AG-TAAA-TTACA--ATCACATTGA-TTGAT-AAAACAAAC--TTACATTTGAATGACG---TGTGATCT-GTTT-TA-TTCTCATTGA--A-TA-TTGTAACTGC-AGCACGGGG---CCCCGGCAAT--GG-G-GCTCAGCAGT-AAGCAATTA--TTTTCTGTGA---TTTGCTT-CTG-CAATTGGGGTA-ATC-TTC-A--CCC--TA-TA-TCTTT-C-GGGTACCCGT--GTTGTCACTGCTA----TT-CCCCCT-GCTGGCAG-G---TCTT-ACAA--GTTCAAGCGAATCCACA--ATCTCG---TT-AAGACATCTGC-A-TCT-AACA--TCCACCATG-TGCA-CAATAGGTGTTTTTG--CGGAAG--GTCATGG--CGGACAA-TTTTCCCGCGATTt
gi|6 : ggttgatctacataactggagttatgatcgattcgtatgctctgttgatgacgagtgtgatctctttagctaaaaaattctgctgtaccaagtatatccaaatgaatcgtaaaaaaaaaaccgacaagaatatttttttaatatgtcaaatgccaaatcaA--AA--TAAATGA--ACA-TAGA-TAAAT--TCCA-TTGTTTGAG--TTTAAA-AATCTTT-TGAC---CAACA-T-TGT-AT-AT---GCT--A-CT--G-AAAACTTG-----CA-TTCTTTT-ACAA-TTCT--T--GCA-TC-A---TT--GA-----CAGT-----------TTTGT--GCTCTT--GTG-CA--GGTAA--TA-TTT-C-AACAG---AGA----TCA--CA---A--AC--CCTGCAA---TA--TGTAATTGTT-GT-C---CAAAG----T-TTTATA--AGT-ACTACA------------T-AA---T---TTT-TAAT---GA-----AA------------ATACTTTA---GATAT----GC----------CATA----GCCAAAAA-TATGTAAAAGTCGATCTGAT-CATAAT-TTAAAT--CACCAT-ACTATGTTGTACA-ATATGATTT-C-TTTAATGCTACAGGCCTGATGCAT-GC--TACACT-AAAAGCCCACATTTTAT--------ACATCCAGC-TC----TGTACAAAATTCAGA-T-CATTAC-ACACG--ACA-TTTA-TTTATTTT-CCACAGACATCAG-----AAGT-AT-G--AA-TAGGA-GTT-AT-CGT---TACGACACGTAGC----TAG-ATCTTATACA--ATATAA-GTA-CC-CTCT---------------CCCCC--TTT-TTTTTTTAAAAA-CCAAATACAACATTTTTTG--GAA---TCCCCCGCATCTC-AAAC-T-ACAG-CAG-AACTGGCCCCGCAAAGCGACTT-AATGAAGGT-AATGT-GGGGAAA-CTAAGTC-TT-G---TTCATTA--TTACGTTTC-ATTTAGGTT--AAG-GTGCGTGTGTTGTGTGTGTGTGTGTGT-G-GGGGGGGGGGGGT--TATGTGC--ATAAGACGTGCT-ATTCTCA--GTC-AGAAACTTATGCA-G-TACTAATTTCT-AA-TACACA-CTGTCCACAAAGTTAAA-TTACACTATCAT-TTGA-TTGATAAAAACAAACG-TTACA-TTGAA--ACGT--GTCGATCT-GTTT-TTCCTCTCGCTTTAAA-TACTTGCAACTGC-A--ATGGGG---CTACAGCT------------CAGCACGTAAACAATTATTTTTTCTGTGAC-TTTTG-TT-CTG-AAA-TGGGGT---TAATTCAACTCCT--CCCTAGCCTTT-CTGGATA-CCGT--G-TGTAGCTGTTACA-TTTACCCCA--GC--GCAG-G-TTT-TC-CCAATTTTTCAAGCGAATTCAAAGCATTTCG--TTTAAAAACA-CTGCAA-TCTAAACACCTCCACCATG-TGCA-CCATCGGTG-TTTTG-ACGG-AG--GTCATGG--CGGAGAA-TTCTCCCGCGA-TTC-TGA-TTG-GCTGTGCGAAGATGGTA-A-CTCC-C-CTCCCCTGACGAC-GTGGGAAG
gi|7 : acATGCCACACAT-AGTGGCAA-TGGACACAAGT-GCATGCTCAACACTATAA--GTATTAGATGACTTA--AATTT-TTTTTTAACATCTTGTCATGTAAT-AT-TATGTAC-CAC---AACCCCTAACCCATTGTATTTA-GAAG-CACCTAACAAAAA-----TGAAGGGGACTCGATAAATAGAAATTCGACGGG-TTTAATGATCA-GGGATGCATTTTCGTGGATCTATTAGACTTCTGGGACAATACATTC-CC--CAGTTCACTAACCCTCTTA-TCCTTCAA-CATTTATTAA-AAATGGATCTTCCT-TCA---T-TT-GT-CATTTTTAGG-ATTTT-TGACCCC----------------CCCCC----CCACCCCACCCCTGCCCCAAC---------------------C-GCCCATTCCCCC-CCC----TCC--CTCC----CAG-TG-----AATAG--TTTTCCCGTTCTTTGATATATATAATC-------------TCCT-CAA-ATTGC--AAAAATCTTAAATTAATGAACAG-TATTTGTTACCAA--AAACTAAA-GACCACATTAGATTAAGTGGTTTTATTGTT-GAG--TTTAAAGGAATC-T-TGACCATCAACA-TAGGTAATTCC-TTTCTTCAACTTGA-AAACTTTGTCGATTA-CTCTCTTAATAAGT-CA--TCCGCAGTC-AATGTTTAGAAC-TAT-GTGCAA-TAGATGTATGCTAGCTCCTGGGTGTCAGGGGTAAATCACTTT-TCAAAAACGCAGATTCCTCATTAATTTACCACAACCTGCAATGATA--TGTACTTGTTGGT-AACTCCAAGCTTTT-TTTATAGGAGT-ACAACACAATTAGCCCACT-AAAC-AGA-TTTCTA-TCCGGAAACCAAA------------ATACTTTA---GTTAT-TTAG--------G--TATA----GTAAAcgtg
16 sequences could not be aligned to this reference sequence:
Unaligned ( gi|8 ): ATCGTTAATCGCTCGTATTTTTACCTGCGGATATATTTCACAGACAATCAGTTTGTCAAAAGACTCTAGACCCAACTTGCTCGCCAGAAAAGTTACTGTCTAGTTCAACAAATTTCACTCGCTAGTAAACGCAGAAGTAGCAACGAAATTGTGAAACCTTGCGTGCACTAGATGCTTTCGTTAGCATGATGTTACATTGGCATGTTATTTGTGCAGAAATGTTGTAGAACAAATTGTCCAATATTCATTCAGAGCAGCAACAATTCTTGCAGCTAGTGCCCAGATGCGATACCAACATTGTATTTCATTTTGTTATTTGGGATTTTA
Unaligned ( gi|9 ): CTCTTCTCACCGCTCCGCCTACTGATGGCAACGTCACATTCGCGTGTTACAGATCCTCAAGCTTGCATTAAACAACATGGCGGCGATGTCGATCTTGCACGGGTATCATGTAATCGCCTCGTTTGGCACGAATTCTTCACAGAAAGTTTGTCAAATAGGATCTGCACATTACTTCATGAGAAAGTTACCGTTTCAAAAAGTGTTCTACTGAGAAAAAGAACGCATGAAACAGCAATTGTAATCAACTGGCCACTGGGATGCTTTCCGTAGCCTGAATGCCATGTTATTACCAGTGTGCATGAAATGG
Unaligned ( gi|10 ): TTTTTAACAGCAAAGTTTGTCAAAGGATCTGACACGTTCAGAGAAAGTTGCGTTCACAAAATATTTCAATGAGTGAAAAACGCAGAAAACAGTTTAAACGTGTGCACTAGGATGCTTTCGTAGCAATGATTATATTATTGTGTGCAACGAGATGGCTGGCAGAACAATATTGTCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTCACAGAAATGGGTAAACTACGGACACCAATTTCGAGTTTATTGTTT
Unaligned ( gi|11 ): CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCGCCCCCCCCCCCCCCCCCCCCCCCCCCCCCACCCCCCCCCCCCCCCCCCCCCCCCCCCCAATGAAAATATGTATTAAAAGTTATGAAATTCATTCTTATCACAGTTTATTTCTAAAATAGTGAATTTCAGAACAAAAAGTCTGCACTAAATGAACAATATTATATAAATTTTGATAAATTTATAACTCTAGCATTGAAACTATTTGTAACA
Unaligned ( gi|12 ): TCACTCTTCCACGCTCCGCCCACTGATGGCAACGTCACACACGTGTTTACAGACTCCGTCAACTTACATGTAAACAACATGGCGAGCGATGTCGATCTTGCACCGGGTATATTGTTAATCGTCCCGTTTGACAACGAATTTTCACAGAAAAGTTTGTCAAATGATCTGACATACTTCAGAGAAAGTTACTTACGTTCACAAAATTTCACTGACTAAAA
Unaligned ( gi|13 ): CCCCACCCCCCCCCCCCCCCCCCCCCCCCCCCCCTCCCCCCCCCCCCCCCCCCCCCCCCCCCCTTTTCACCTACATATTTATAGTACATGTATTGATAACATGAAAGGTATATTATTGCAATTGATATCACAATATTTACGTATTCTAATAACAACCTTGACCTTATTGACTTAGAAATTGATGCGTAGCATCATATCT
Unaligned ( gi|14 ): CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCACGCCCCCCCCCCCCCTTTAATTTGTGCCAACTTCTTAAAAGTATACTTTTATCATACTTGCATATCATTTTTTATTTTAACATTTCAATATAAATTCATCAATCTTTATTTCATAATTAAT
Unaligned ( gi|16 ): CCCCCGCCACCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCTTAAGTATTTCACAATACACATTCACACCGAATAAATATATCTGTATTGACAAAGTTCGTTGATATCACGGAGAAATAT
Unaligned ( gi|17 ): ACTCTTTCCACGCTCCGCCCACTGATGGCAACGTCAGCACGCGTGTTTACAGACTCCGTCAACTTTACACTGTAAAACAACATGGCGATCATGTCGAATCTTGCACGGGTCATC
Unaligned ( gi|18 ): ACTCTTCCACGCTCCGCCCACTGATGGCAACGTCACTCACGTGTTTACAGACTTCGTCAGCTTACATGTAATTAACATGGCGAACGATGTCAATCGTGCATCGGGTACC
Unaligned ( gi|19 ): TTGGTATAAGTTTTTTCTATTGTAAATAGATATATTGTTTTTGCTGGTAAAAGGAATATCTTGTTGATAGGTTGGATCTATTATAAACTGG
Unaligned ( gi|20 ): GATTTAAAAATGTTTAGTTAAAAAATCCTGAATAAAATAGGTATATATTTGCTGCGTTACCGTTCCACTTATAAATGTTTCATTGCTTTC
Unaligned ( gi|21 ): CCCCCCCCCCCCCCCCCCCCCCTCAGCTAAATTCACCCAGATCTGTGGTTATAATTGGTAAGAAAAGTTTAGTGGATATCTCAATA
Unaligned ( gi|22 ): CCCCCCCCCCCCCCCCCCCTTTTTACCCTCAGCGGGATATTTTTTTATTGACATTGTATTAGATAAATTTTGGAAGGTAT
Unaligned ( gi|24 ): CACTCTTCCACGCTCCGCCCACTGGAGGCAACGTCACACACGATGTTTACAGACTCCGTACAACTTACATG
Unaligned ( gi|25 ): ATTCACTCTTCCACGCTCCGCCCACTCCGTCAACTTACATGTAAACAACATGG
Alignments
lowQualScore : 1 111 1 1 33333333 11 11 222222 222 555555555555555555 11 22 111 55555555 22222222 11 1111 1 111 111111 22222 333 1 1 2222 11 11 3333333333333333 1111 999999999999999999999999999999 22222 1111 1 1 111111111111111 222 11 222222222 2 1 11 1 1 11 11 11 11 11 111 111 11111 1111 1111 22222 1 11111 111 555555555555555555555 11 2222 11 22222222222 222 1111 333333333333333 111 11 11 222222 111111 11 222 44444444444444444444444444 111 5555555555555555 1111 1 11 1 1 1 1 1 11 1 1 33333333 1 2222 1 1 111 1 1 1 22222 1 1 11 1 1 1 111 2222 1 11 1 1 1 111 11 11 1 111 1 222 11 111 1 1 1 1 1 11 22222 11 1 111 1 222222 111 11 1 11 1 1 1 1 1 1 11 1 333 2 1 22 11 2222 1 2222 1111 1 1111 111 333333333 3333 22 11 1 1 1 1 11 1 11 1 1 11 1 1 2 11 11 1 11 1 111 1 1111 1 1 1 1 1 1 11 11 1 1 1
lowQualScore : 3 6 999 3 3 7 99999999 88 88 0 0 222222 777 0 777777777777777777 4 8 66 0 33 777 88888888 66 99999999 99 33 6 4444 3 6 1 6 0 0 555 6 999999 44444 1 6 555 5 7 2 5 5 8888888 5 7777 5 5 44 2 00 0 5 3333333333333333 0000 5 77 888 222222222222222222222222222222 4 5 33333 77 3333 3 3 666666666666666 6 555 33 222222222 6 6 0 33 0 0 11 11 11 11 8 8 11 3333 8 99 8 0 8 444 222 8 00000 2222 2222 00000 8 0 0 8 6 8 33333 8 444 666666666666666666666 1 11 5555 88 8 11 22222222222 555 7777 333333333333333 111 99 11 8 111111 444444 55 6 999 6 99 6 777 6 6 99999999999999999999999999 111 1111111111111111 4444 88 8 0 77 33 0 2 3 0 2 0 0 3 2 0 99 0 0 1 0 55555555 0 0000 333 0 0 2 666 0 3 0 3 0 2 55555 0 0 33 66 0 0 0 777 3 1111 0 2 77 0 0 5 222 1111 2 33 33 0 666 0 333 2 33 777 0 0 3 0 3 0 3 3 3 0 2 2 0 22 3 99999 77 0 555 0 888888 2 8 666 2 2 33 2 2 0 3 33 0 3 9 0 0 0 3 0 0 33 3 0 000 0 0 9 33 3 33 8888 0 4444 4444 0 4444 777 999999999 3 4444 55 22 0 0 0 0 33 66 0 2 33 2 2 0 3 0 33 0 2 2 0 0 22 33 0 33 2 0 3 2 777 0 3 4444 0 2 0 0 0 5 0 33 33 0 7 3 2 0 8 6 6 888 8
lowQualScore : . . ... . . . ........ .. .. . . ...... ... . .................. . . .. . .. ... ........ .. ........ .. .. . .... . . . . . . ... . ...... ..... . . ... . . . . . ....... . .... . . .. . .. . . ................ .... . .. ... .............................. . . ..... .. .... . . ............... . ... .. ......... . . . .. . . .. .. .. .. . . .. .... . .. . . . ... ... . ..... .... .... ..... . . . . . . ..... . ... ..................... . .. .... .. . .. ........... ... .... ............... ... .. .. . ...... ...... .. . ... . .. . ... . . .......................... ... ................ .... .. . . .. .. . . . . . . . . . . .. . . . . ........ . .... ... . . . ... . . . . . . ..... . . .. .. . . . ... . .... . . .. . . . ... .... . .. .. . ... . ... . .. ... . . . . . . . . . . . . . .. . ..... .. . ... . ...... . . ... . . .. . . . . .. . . . . . . . . . .. . . ... . . . .. . .. .... . .... .... . .... ... ......... . .... .. .. . . . . .. .. . . .. . . . . . .. . . . . . .. .. . .. . . . . ... . . .... . . . . . . . .. .. . . . . . . . . ... .
lowQualScore : 3 7 333 3 3 3 00000000 33 33 8 8 666666 000 6 444444444444444444 6 0 00 6 44 000 99999999 88 77777777 22 33 7 2222 3 7 7 7 7 7 888 7 222222 33333 5 7 555 5 3 0 7 1 4444444 7 4444 7 7 44 5 11 1 0 1111111111111111 6666 0 55 888 777777777777777777777777777777 0 7 99999 99 6666 3 3 333333333333333 7 222 88 777777777 7 7 8 88 0 0 00 00 66 00 0 0 00 8888 0 00 0 8 0 000 222 0 22222 6666 2222 00000 0 8 8 0 0 0 00000 0 000 222222222222222222222 0 00 8888 88 0 00 22222222222 000 0000 888888888888888 888 00 22 0 000000 333333 88 7 000 7 22 7 555 7 7 77777777777777777777777777 777 7777777777777777 2222 88 0 0 22 88 0 5 2 0 5 0 0 2 5 0 22 0 0 0 8 00000000 0 8888 888 0 0 5 222 0 2 8 2 0 5 00000 0 0 22 55 0 0 0 000 2 2222 0 5 00 0 0 5 888 5555 5 88 88 0 888 0 000 5 88 555 8 0 2 0 2 0 2 2 2 0 5 5 0 55 2 55555 00 0 000 0 222222 5 8 222 5 5 88 5 5 0 2 88 0 2 2 0 0 0 2 0 0 88 2 0 000 0 0 8 88 2 88 8888 0 8888 8888 0 8888 555 555555555 5 5555 55 55 0 0 0 0 22 55 0 5 88 5 5 0 2 0 88 0 5 5 0 0 00 88 0 22 5 0 2 5 000 0 2 2222 0 5 0 0 0 5 0 88 88 0 0 3 0 8 0 7 7 333 0
consensus : AAATGCCAAA-ATCAGTN--AA-TGGACA-AAGCAGCACGC-----ACTTTAA--GTA--AGATACAGA-C---AATATATTTTTTAAAA---------ATAATCAG-CACGTAT-CACCTAAAAC-ATAACCCATTGTATTTAAGAAGGCATCTAAAAAA-AA-----TGA--GGGACTC-ATAAAT-GAAATT----GGG-TC-AATAATCA-GGGATGCGGTGCCG--GATCTAG-AG------GGGACAATACATTT-CC--CCTTTCACTAACC-TCA-A-GCTTTCAAACACTTATAAA-AAATGAATCTTTNT-TCA-AATGTT-GT-CATTTT-AGG-ATCTT-CGACCCC----------------CCCCC----CC-CCCC-CCC---CCCCAGC---------------------CAGT---TTCTCCG-TTC----TAC--ATNCAATTCAT-TGCAAA-AATAGGCTTTT---GT--TTTGA-ACAT-CAATCATTCTGAGT----TCTT-CAGTCTTGCT-TAATATC-TAAATTNATGA--AG-TATTTGTTA-CAA--AA--TAAATGA--ACA-TAGA-TAAAT--TCTAATTGTT-GAG--TTTAAA-AAATCTT-TGAC---CAACATTTGT-ATTAT-TGGCT--AACT--G-AAACTTTG-----CA-TTCTTTT-ACAA-T-CT--T--GCAGTC-A---TT--GAA--TATAGTGC-A-T--GTGTTTGT--GCTCTT--GT-G-CA--GGTAA--TA-TTT-CCAAAAG---AGA----TCA--AA---A--AC--CCTGCAA--ATA--TGTAATTGTT-GT-A---CAAAG----T-TTTATA--AGT-ACTACA-AATT-GCCC-CT-AA---TGA-TTT-TA-T---GA---CAAA------------ATACTTTA---GATAT-T--GC-------G--CATA----GCAAAAAA-TATGTAAAAGTCGATCTGAT-CATAAT-TTANAT--CACCAT-ACTATGTTGTACA-TAATGATTT-C-GTTAATGCAACAGGCCTGATGCAT-GCCGTACACT-ATAAG-ACANATTTTAT-------CACATCCAGC-TC---TTGTACAAAATTCAGGTT-CATTGC-ACACG--ACA-TTTANTTTATTTT-CCACAGACATCAG-----AAGT-AT-GT-AATTAGGA-GTT-AT-CGTA--TACGTTACGTACC----TAG-ATCTTATACA-TATATAA-GTA-CCTCTCTC-CCTCCCTACCC--CCCCC--TTT-TTTTTTT-TAAA-CCAAAT--AACACTTTTTT--GAA---TCCCGTTCATCTC-AAACTT-ACAG-CAGAAACTGGCCCCGCAAAGCGACTT-AATGAAGGTGAATGG-GGGGAAATCTATGTCATT-G-T-TTCATCA-TTTACGTTTC-ATTTAGGTTGAAGG-GTGCG-----TGTGTGTGTGTGTGTGT-G-GGGGGGGGGGGGTGGTATGTGC--ATAAGACGTGCT-ATTCTCA--GTC-AGAAACTTATGCATG-TACTATTATCT-AA-TACACA-CTGT-CAC--AGTTAAA-TTACAC-NTCAT-TTGA-TTGATAAAAACAAAC--TTACATTTGAA--ACG---ATCGATCT-GTTT-T--CTCTCGTTGT--A-TA-TTGCAACTGC-A--ATGGGG---CTACAGCTAT--NA-G-GCACAGCA---AAACAATTA-TTTTTCTGTGAC-TTTTG-TT-CTG-AAA-TGGGGTA-ATCATTC-ACTCCC--TACTAGCCTTT-CTGGATA-CCGT--G-TGTCACTGTTACA-TTT-CCCCATGGC--GCAG-G-TTTCTC-ACAATTTTTCAAGCGAATTCAAAGCATTTCG--TTT-AAAACATCTGC-A-TCT-AACACCTCCACCATG-TGCA-CCATCGGTG-TTTTGAACGG-AG--GTCATGG--CGGACAA-TTCTCCCGCGATTTC-TGACTTG-GCTGTGCGAAGATGGTA-A-CTCCAC-CTCCCCTGACGAC-GTGGAAGG
Reference ( family-1037 ) : AAATGCCAAA-ATCAGTN--AA-TGGACA-AAGCAGCACGC-----ACTTTAA--GTA--AGATACAGA-C---AATATATTTTTTAAAA---------ATAATCAG-CACGTAT-CACCTAAAAC-ATAACCCATTGTATTTAAGAAGGCATCTAAAAAA-AA-----TGA--GGGACTC-ATAAAT-GAAATT----GGG-TC-AATAATCA-GGGATGCGGTGCCG--GATCTAG-AG------GGGACAATACATTT-CC--CCTTTCACTAACC-TCA-A-GCTTTCAAACACTTATAAA-AAATGAATCTTTNT-TCA-AATGTT-GT-CATTTT-AGG-ATCTT-CGACCCC----------------CCCCC----CC-CCCC-CCC---CCCCAGC---------------------CAGT---TTCTCCG-TTC----TAC--ATNCAATTCAT-TGCAAA-AATAGGCTTTT---GT--TTTGA-ACAT-CAATCATTCTGAGT----TCTT-CAGTCTTGCT-TAATATC-TAAATTNATGA--AG-TATTTGTTA-CAA--AA--TAAATGA--ACA-TAGA-TAAAT--TCTAATTGTT-GAG--TTTAAA-AAATCTT-TGAC---CAACATTTGT-ATTAT-TGGCT--AACT--G-AAACTTTG-----CA-TTCTTTT-ACAA-T-CT--T--GCAGTC-A---TT--GAA--TATAGTGC-A-T--GTGTTTGT--GCTCT---GT-G-CA--GGTAA--TA-TTT-CCAAAAG---AGA----TCA--AA---A--AC--CCTGCAA--ATA--TGTAATTGTT-GT-A---CAAAG----T-TTTATA--AGT-ACTACA-AATT-GCCC-CT-AA---TGA-TTT-TA-T---GA---CAAA------------ATACTTTA---GATAT-T--GC-------G--CATA----GCAAAAAA-TATGTAAAAGTCGATCTGAT-CATAAT-TTAAAT--CACCAT-ACTATGTTGTACA-TAATGATTT-C-GTTAATGCAACAGGCCTGATGCAT-GCCGTACACT-ATAAG-ACANATTTTAT-------CACATCCAGC-TC---TTGTACAAAATTCAGGTT-CATTGC-ACACG--ACA-TTTANTTTATTTT-CCACAGACATCAG-----AAGT-AT-GT-AATTAGGA-GTT-AT-CGTA--TACGTTACGTACC----TAG-ATCTTATACA-TATATAA-GTA-CCTCTCTC-CCTCCCTACCC--CCCCC--TTT-TTTTTTT-TAAA-CCAAAT--AACACTTTTTT--GAA---TCCCGTTCATCTC-AAACTT-ACAG-CAGAAACTGGCCCCGCAAAGCGACTT-AATGAAGGTGAATGG-GGGGAAATCTATGTCATT-G-T-TTCATCA-TTTACGTTTC-ATTTAGGTTGAAGG-GTGCG-----TGTGTGTGTGTGTGTGT-G-GGGGGGGGGGGGTGGTATGTGC--ATAAGACGTGCT-ATTCTCA--GTC-AGAAACTTATGCATG-TACTATTATCT-AA-TACACA-CTGT-CAC--AGTTAAA-TTACAC-NTCAT-TTGA-TTGATAAAAACAAAC--TTACATTTGAA--ACG---ATCGATCT-GTTT-T--CTCTCGTTGT--A-TA-TTGCAACTGC-A--ATGGGG---CTACAGCTAT--NA-G-GCACAGCA---AAACAATTA-TTTTTCTGTGAC-TTTTG-TT-CTG-AAA-TGGGGTA-ATCATTC-ACTCCC--TACTAGCCTTT-CTGGATA-CCGT--G-TGTCACTGTTACA-TTT-CCCCATGGC--GCAG-G-TTTCTC-ACAATTTTTCAAGCGAATTCAAAGCATTTCG--TTT-AAAACATCTGC-A-TCT-AACACCTCCACCATG-TGCA-CCATCGGTG-TTTTGAACGG-AG--GTCATGG--CGGACAA-TTCTCCCGCGATTTC-TGACTTG-GCTGTGCGAAGATGGTA-A-CTCCAC-CTCCCCTGACGAC-GTGGAAGG
gi|1 : ATACAG--C---AATATATCTTTTAAAA---------ATA----G-CACATAT-TACCTAAAAC--TAACCC---GTGTT---------ATCTAAATGA---------GA--GGGGCT--ATAGAT-TAAATT----GGGGCC-AATAATCA-GTGATGCAGTGCTG---ATGTAA-AG------GGGACAATAAATCT-AGAACTTGTCACCAACC-TCA-AAGCTC---AACACTTATAAA-GAATGA-----TAT-TCA-AATGTT-GT-CATTT--ATG-ATCTT-CGACACC----------------CCTCC----CC-CCC------------AGTG--------------------TAGT---TTTTCCG-TTC----TAC--ATT---TTTAT-TGCAAA-AATAGGC--TT---GT--T---A-AC---CAATCATTCTGAAT------CT-CAGTC-TGCTGTAATATC-TAAAT
gi|15 : actcttccacgctccgccctgatggcataacagtcatcacgtgttacaagactccgtcaacttacatgtaaacaacatgggtgcatgtcatgcttgcaccgtacatattgtaaatcgcctcgttttgacgacgaattgttcacagaaaagttgtcaaggatctgacacagcttgcagagaaagttacgttcactaaaatttatgagtcaataacgcagaacagcacttgtaaacgggtgctactcatagtctcgatgctttcgtaacatggatgcatgtattatgtgtacagatatggctgcagaaaaactgtcccgatatttttacagagagctacatgctgcagctagctgcatcagatggtaaactacgggaaattaaacgagtttaattttttgtgaggaatttaaaaatgttgttttagttaaaaaacttaataaaatagccctaaaacgtctgcgtttacccgttcccattttataagatgttttcatctgctgtctgcatatttatattgtatttttcagcctaactaatagccacttccacaaatattgaactacattgggatatattaaaaattggttgcttaaagatttatatagtggcattgcatatgtatcccccttttttccaggtctatctccctaatccaatatatatgctaataaaatacacggacggttcgggtggtaacacccgtcacaggcaatcacagaagggaaaaaaactcgtaacgtaattaattatagtaatagttcatttatttgtaaatgccatattgaacacagtaaacttatattttcagccagtttaaagataacatccatgggtcagcaatggaatggaacacacaaacaacatacaagtcaataaggcagataatctttatatcaaagttgatcaatgcatagtgcgattgaaattaaaattcttgtattccaaataattgtattgccctgatcatgttgagaataatgcaattcttttgtcatgtcctccttcttttacgtacttgggaaacttgcacaatcaaatctccaagcaaagtacatgtttgcaaggttaattgtaaaatatatcaaaacacgccttggtattcttttctattgtaaagagaattgttttctgctaaaaaggggaagcttgtgatactgggttgatctacataactggagttatgatcgattcgtatgctctgttgatgacgagtgtgatctctttagctaaaaaattctgctgtaccaagtatatccaaatgaatcgtaaaaaaaaaaccgacaagaatatttttttaatatgtcaaatgccaaatcaT-AGG----TC-CAACCCC----------------CCCCC----CC-CCCC-CCC---CCCCCTC------------------------T---CTCTCTG-TT-----TAT--ATGCGATTC
gi|2 : catgtttttcataataaactcAAATGCCAAA-ATCAGTT--AA-TGGACA-AAGCAGCAC-------ATTTTAACAGTA--AGATACAAA-C---AAC---TTTTTTTACA---------ATAATCAGTCATTTAT-CAGC--AAACTATAACC-ATTGTATTTAAGAAGGCA-ATAAAAAA-AAACCAATGA--GGGACTC-ATAAAT-GAAATT----GGA-TC-AATTATCAAGGGATGCGGTGGCG--GATCTAG-AG------GG-ACAATACATTT-TC--CCCTTCACTA-CC-TCA---GCTTTCAAACA-TTATAAA-A--TGAATCTTTCT-TCT---TGTT-GTTCATTTT-AGGCATCTT-CGACCCC----------------CCCCCCCCC-----CC-CCC---CCCCA------------------------AGT---TT-TCCGTTTT----TAT--ATACAATTCATCTGCAAAGAATAGGCTTTT---GT--TTTGA-ACAT-CAAT--TTCTGAGT----TCTTCCAGTCTTGCTCTAATATC-TAAATTTATGA--AG-TATTTGTTA-CAA--AA--TAAATGA--ACA-TAAA-TAAAT--TCTAATTGTT-GAG--TTTAAA-AAATCTTCTGAC---CAACATTTGT-ACTAT-TGGCT--AACT--G-AAACTTTG-----CA-TTCTTTT-ACAA-T-CT--T--GCAGTC-A---TT--GAA--TATAGTGC-ATT--GTGTTTGT--GCTCT---G--G-CA--GGTAA--TA-TTT-CCAAAAG---AGA----TCA--AA---A--AC--CCTGCAA--ATA--TGTAATTGTT-GT-A----AAAG----T-TTTATA--AGT-ACTACA-AATT-GCCC-CT-AA---TGA-TTT-TA-T---GA---CATA------------ATACTTTA---GATAC-T--GC-------G--CATA----GCAAAAAA-TATGTAAAAGTCGATCTGAT-CATAAT-TT-TAT--CACCAT-ACTATGTTGTACA-TAATGATTT-C-GTT-ATGCATCAGGCCTGATGCAT-GCCATACACT-ATAAG-ACAAATTTTAT-------CACATCCAGC-TC---TTGTACAAAATTCAGATT-CATTGC-ACACGCCACA-TTTAGTTTATTTT-CCACAGACATCAG-----AAGT-AT-GT-AATTAGGAGGTT-ATCCGTA--TACGTTACGTACC----TAG-ATCTTATACA-TATATAA-GTA-CCTCTCTC-TCTCTCTACCC--CCCCCCTTTT-TTTTTTT-TAAA-CCAAAT--AACACTTTTTT--GAA---TCCCGTTCATCTCAAAACTT-ACAGCCAGAAAC-GGCCCCGC-AAGCGACTT-AATGAAGGTGAATGG-GGGGAAATCTATGTCATT-GTT-TTCATCA-TTTACGTTTC-ATTTAGGTTGAAGG-GTGCG-----TGTGTGTGTGTGTGTGTGG-GGGGGGGGGGGGTGGTATGTGC--ATAAGAC--GCTCATTCTCA--GTC-AGAAACTTATGCATG-TACTATTATCT-AA-TACACA-CTGT-CAC--AGTTAAATTTACA--TTCAT-TTGA-TTGAATAAAACAAAC--TTACATTTGAA--ACG---ATCGATCT-GTTT-T--CTCTCGTTGT--A-TA-TTGCAACTGC-A--ATGGGG---CTACAGCTATTACA-GCGCACAGCA---AAACAATTA-TTTTTCTGTGAC-TTTTG-TT-CTG-AAA-TGGGGTA-ATCATTC-ACTCCC--TACTAGCCTTT-CTGGATA-CCGT--G-TGTCACTGTTACA-TTTCCCCCATGGC--GCAG-G-TTTCTC-ACAATTTTTCAAGCGAATTCAAAGCATTTCG--TTT-AAAACATCTGC-ACTCT-AACACCTCCACCATG-TGCAGCCATCGGTG-TTTTGAACGG-AG--GTCATGG--CGGACAACTTCTCCCGCGATTTCGTGATT---GCGTTGCGGAGATGGTACA-CTCCCA-CTCCCCTGACGACTATGGAAGGtcggtaatagtgtacagttctattatgaacattagagaacattttcaaaatcaaatattaa
gi|23 : AAAG----T-TTTATA--AGT-ACTAAA-AATT-GCCC-CTAAA---CGA-TTT-TA-T---GA---AAAA------------ATACTTTA---GAT---------------------------------A-TATGTAAAAGTCGATCT-AT-Ct
gi|26 : TTG-GCTGTGCGAAGATGGTA-A-CTCCAC-CTTCCCTGACGAC-GTGGAAG
gi|27 : aTA-A-CTCCAC-CTCCCCTGACGAC-GTGGAAGcat
gi|28 : TTG-GCTGTGCGAAGATGGTA-A-CTCCAC-CTctg
gi|3 : TTATAAATAAATGAAT-TATGTATCATAATGT------ACATT-A---------CGGCCCC----------------CCCCC----CC-CCCC-CCC---CCCCt
gi|3 : actcttccacgctccgccactggatggcaacgtcacacgcgtgtttacagactcgtcaacttgcatgtaaacaacatggcgcgcgatgtccgctcttgcaccgggtatcatgttaagtcgccttcgtttgaaccacgaaattttacagaaaagttgtccaaaggatctgacacccttctgagaaagttacgttcacaaaatttcactgagtaaaatcgcagaaacacaattgtaaaacgtgtgcaactagatgctttcgtagcatgaattgcattgttattacagtggcagaaatggtgtagaacaaattgtcccaatattttaacagagagctactgttctgaggctagtgcacagatgggtaaacacggtgcaattattgagtttaaattgttttgttaaggaatttaaaatggttgtttagttaaaaactgaataaaaaataggctatatttgcgcgttttaccgttcttttaatttttataaatgtttcatctgcttttaactaaaatcaccatcttccaaatgtgaaactatcaattgtttaagattttaaggacaagtatcccccttttccccccaggctaccctaatccaatatatttctataaatacacccgtccacacaaatccaacggatggggggAAATGCCAAA-ATCATTA--AACTCGACA-AAACAGCATGC-----ACATTAA--GTA--AG-TACAAAAC---AAT-T-TTTTTTAAAC---------ATA-TC---CATATATGCACC----AC-ATAACCCATAGTATT--AGA--GCAT--AAAAAACAA-----TGA--GGGA-TC-ATAAAT-GAAATT----GGG-TC-AATAGCAA-GGGGAGCACTGCTG--GATCTAG-AG------GGGACAATACATTT-CC--CCTT-CACTCAC--TCA---GCTT-CAAACA-TTATAAA-AA-TGAATCTTCTT-T-----TGTT-GT-CATTTT-AGG-ATC---------------------------CCCC----CC-CCCC-CCC---CCCAAG-----------------------------TTTTCCG-TTTATA-TACAAATACAATTCAT-TGCAAA-AATAGGC-TTT---G----TTGA-AC---C-ATCATTCTGAGTCTCATCTT--AGTCTTGCTCTAATATC-acacgtattaaaaatacagtagccaattaaagatagcattcctgtggggtcaatggaactgaatctaactcaaagacaagatacattaagtcatacggcaaagaatatttatcatcaaaattgatcaatgccacaagtgttgaaatataaaactttttgaattccaaataatgttctgctgcctcatcagtgttaaaataattggcaaattcttttgtcatgtccctccttctttacatacttgggaacttgcaacagatacaaacttccaacaaagtacatgttgcagttcaattggtaatatcaaatcagccttcataagtgggtatttttttccattgtaagtagaatattgtttttggtacaaagggatagctttgttgatagggttgatctaataactggagttgatgatgattcagtctgaggtatgctctgttgatgaagagtgtggtttttgactaaaaaatgctgctgtaccaagtattctcaaatgaattgtaaacaaagacagaatattttttaatactgtgcaaaatgccaaaatcattaaactcgacaaaacagcatgcacattaagtaagtacaaaacaattttttttaaacatatccatatatgcaccacataacccatagtattagagcataaaaaacaatgagggatcataaatgaaattgggtcaatagcaaggggagcactgctggatctagaggggacaatacatttccccttcactcactcagcttcaaacattataaaaatgaatcttcttttgttgtcattttaggatcccccccccccccccccaagttttccgtttatatacaaatacaattcattgcaaaaataggctttgttgaaccatcattctgagtctcatcttagtcttgctctaatatc
gi|4 : actcttccacgctccgccactggatggcaacgtcacacgcgtgtttacagactcgtcaacttgcatgtaaacaacatggcgcgcgatgtccgctcttgcaccgggtatcatgttaagtcgccttcgtttgaaccacgaaattttacagaaaagttgtccaaaggatctgacacccttctgagaaagttacgttcacaaaatttcactgagtaaaatcgcagaaacacaattgtaaaacgtgtgcaactagatgctttcgtagcatgaattgcattgttattacagtggcagaaatggtgtagaacaaattgtcccaatattttaacagagagctactgttctgaggctagtgcacagatgggtaaacacggtgcaattattgagtttaaattgttttgttaaggaatttaaaatggttgtttagttaaaaactgaataaaaaataggctatatttgcgcgttttaccgttcttttaatttttataaatgtttcatctgcttttaactaaaatcaccatcttccaaatgtgaaactatcaattgtttaagattttaaggacaagtatcccccttttccccccaggctaccctaatccaatatatttctataaatacacccgtccacacaaatccaacggatggggggggggggggggggggggggggggccgtaatgtacattatgatacataattcatttatttataaacacgtattaaaaatacagtagccaattaaagatagcattcctgtggggtcaatggaactgaatctaactcaaagacaagatacattaagtcatacggcaaagaatatttatcatcaaaattgatcaatgccacaagtgttgaaatataaaactttttgaattccaaataatgttctgctgcctcatcagtgttaaaataattggcaaattcttttgtcatgtccctccttctttacatacttgggaacttgcaacagatacaaacttccaacaaagtacatgttgcagttcaattggtaatatcaaatcagccttcataagtgggtatttttttccattgtaagtagaatattgtttttggtacaaagggatagctttgttgatagggttgatctaataactggagttgatgatgattcagtctgaggtatgctctgttgatgaagagtgtggtttttgactaaaaaatgctgctgtaccaagtattctcaaatgaattgtaaacaaagacagaatattttttaatactgtgcaGCATTTGAAAAA-AA-----TGA--GGGACTC-ATAAAT-GAAATT----GGA-TC-AATA-TCA-GGGATGCGGTGCTG--GATCTAG-AG------GGGACAATACATTTTCC--CCTCTCACTAACC-TCA---GCTTTCAA-CATTAGTAAA-AATCGAATCTTT-T-TC----TGTTTGT-CATTT--AGGCATCTTTCGACCCCCCCCCCCCCCCCCCCCCCCCC----CC-CCCC-CCC---CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCGT---TTCCCCC-CCCCATTTGT--ATACAATTCATCTGCAAAGAATAG--CTTT---GT--TTTGA-ACAT-CAAT--TTCTGAGT----TCTTCCAGTCTTGCT-TAATATC-TAAATTGATGA--AG-TATTTGTTA-CAA--AA--TAAATGA--ACA-TAAA-TAAAT--TCTAATTGTT-GAGTTTTTAAA-AAATCTT-TGAC---CAACATTTGT-ATCGTATGGCT--AACT--GCAAACTTTG-----CA-TTC-TTT-ACAA-T-CTTCT--GCAGTCAA---TT--GAAATTATAGTGC-A-T--GTGTTTGT--GCTC----GTGG-CA--GGTAA---A-TTGACCAAAAAGC-AGA----TCA--AA---G--AC--CCTGCAA--ATAG-TGTAA-TGTT-GT-A---CAAAG----TCTTTATAC-AGTAACTACA-AATT-GCCC-CT-AAC--TGACTTT-TACT---G-----AAC------------ATACTTTA---GATATAT--GC-------G--CATA----GCAAAAAA--ATGTAAAAGTCGATCTGATCCATAAT-TAATAT--CACCATAACTATGTTGTACATTAATGATTTGC-GTTAGTGCAACAGGCCTGATGCATCGCCATACACTAATAAG-ACAATTTCTAT-------CACATCCAGC-TC---TTGTACAAAATTCA-GTT-CATTGCAACAC---CCACTTTACTTTA-TTT-CCACAGACATCAG-----AAGT-ATCGTCAATTAGGA-GTTAAT-CGTA--TACGTTACGTACC----TAGAATCTTATACA-TATATAA-GTA-CCTCTCTCTCCTTCTTACCCCTCCCCC--TTTGTTTTTTT-TAAACCCAAAT---ACACTTTTTTGGGAA---TCCCGTTCATCTC-AAACTT-AC-G-CAGAAACTGGCCCCGCAAAGCGACTGAAATGAA--TGAATGGTGGGGAAATCTATGTCATTCG-TGTTCATCATTTTACGTTGCAATTTAGGTTGAAGGTGTGCG-----TGTTTGTGT-TGTGTGT-GTGGGGGGGGGGGGTGGTATGTGCATATAGGACGT-CT-A-TCTCA--GTCAAGAAACTTATGCATG-TACTATTATCT-AATTACACAGCTGT-CAC--AGTTAAA-TTACAT-TTCATCTTGATTTGATAAAAACAAACTATCACATTTGAA--ACGGTCATCGATCTCGTTTCT--CTCTCGTTGT--AGTA-TTGCAACTGCAA--ATGGGGCGCCTACAGCTAT--TACA-GCACAGC----AAACAATTA--TTTTCTGTGACTTTTTG-TTCCTGAAAA-TGGGGTATATCA-TC-ACTCCCTTTACTAGCCTTTCCTGGATA-CCGTTCG-TGTCA-TGTTACAGTTT-CCCCATGGC--GCAGCGTTTTCTCAACAATTTTCAAAGCGAATTCAAAGCATTTCAGTTTT-AAAACATCTGC-A--CT-AACACCTCCACCATGTTGCA-CCATCGGTG-TTTTGAACGG-AGGCGTCATGGGCCGGACAA-TTCTCCCGCGACTTC-TGACTTGCGTTGCG-GAAGATGGTA-ACCTCCTCACTCCCCTGACGAC-ATGGAGG
gi|5 : ATACAG--C---AATATATCTTTTAAAA---------ATA----G-CACATAT-TACCTAAAAC--TAACCC---GTGTT---------ATCTAAATGA---------GA--GGGGCT--ATAGAT-TAAATT----GGGGCC-AATAATCA-GTGATGCAGTGCTG---ATGTAA-AG------GGGACAATAAATCT-AGAACTTGTCACCAACC-TCA-AAGCTC---AACACTTATAAA-GAATGA-----TAT-TCA-AATGTT-GT-CATTT--ATG-ATCTT-CGACACC----------------CCTCC----CC-CCC------------AGTG--------------------TAGT---TTTTCCG-TTC----TAC--ATT---TTTAT-TGCAAA-AATAGGCTT-----GT--T---A-AC---CAATCATTCTGAAT----C--T-CAGTCT-GCTGTAATATC-TAAATT--TGA--AGCTATTTGTTA-CAAGAAA--TAA-TGA--ACA-TAGA-TACAT--T---ATTATT-GATC-TTTCTA-AAATCTT-TGAC---CAACA---GT-GTGAT-TGGCT--A-CT--G-AAACGATT-----CAGTTCTT-----AACT-CT--T--GCAGTC-A---TT------------------T--GTGTGTAT--GCT-T---GT-G-CA--GGTAA--TA-------GAATG---ATA----TC----------------CTGCAA--ATACATGTA-----T-GTGA---TAAAG----C-TT------AGT-ACCATA-A-TT-GACC--T-AAAGATGA-TTT-TAGT---GA---CAAAAATGTTTTAGATATGCGTTAAGTGAAAT-T--GTTTTTATAGATCATGAAGGGCAAAAAAATATATGAAGTCCGATCTGAT-CATAATCTTAAATTACACCAC-A--ATGT-GTATA-TAAT--TTT-CTGTTAATGCAATAAGTCTGAT---T-GC-GTTCACA-GTAAG-ACACATTGTATACACATGCACATCCAGCCTCAGATTGTACAAGATTTAGGTTGCATAAC-A-ACG--ACA-TT-ATTTTATATCACCA-AGGCACCAACCAGAAAGTGAT-GT-CAT-AGGA-GGT-AT-CGTAAATACGTT---TACTAGAGTAG-AT--TATAAAACACATAATGTAACC-----C-CCTCCCCAGCC--CTCCC--TTT-TTTTTC----AA-CCAAAT--CA-ATTTTTTT--GGACCATCTCGGTCATCTC-AAACTTTACAG-CAGAAACTGGCATGGCAAAGCGACGT-AATGAAGGTGAATGG-TGGTAA--TTGTTTCATT-T-T-TAAAATA-CTTACTTTTC-ATGTGGGT----GG-GTGCG------GTGTGT-------------CGGGAGGGTGGGTGGTAT-TGC--ATAAGACGTGCT-ATTCTCAAGATT-AGAA--CTAAGCAGGTTACTATTAAGTAAA-TAC-CA-CTGT-CAC--AG-TAAA-TTACA--ATCACATTGA-TTGAT-AAAACAAAC--TTACATTTGAATGACG---TGTGATCT-GTTT-TA-TTCTCATTGA--A-TA-TTGTAACTGC-AGCACGGGG---CCCCGGCAAT--GG-G-GCTCAGCAGT-AAGCAATTA--TTTTCTGTGA---TTTGCTT-CTG-CAATTGGGGTA-ATC-TTC-A--CCC--TA-TA-TCTTT-C-GGGTACCCGT--GTTGTCACTGCTA----TT-CCCCCT-GCTGGCAG-G---TCTT-ACAA--GTTCAAGCGAATCCACA--ATCTCG---TT-AAGACATCTGC-A-TCT-AACA--TCCACCATG-TGCA-CAATAGGTGTTTTTG--CGGAAG--GTCATGG--CGGACAA-TTTTCCCGCGATTt
gi|6 : ggttgatctacataactggagttatgatcgattcgtatgctctgttgatgacgagtgtgatctctttagctaaaaaattctgctgtaccaagtatatccaaatgaatcgtaaaaaaaaaaccgacaagaatatttttttaatatgtcaaatgccaaatcaA--AA--TAAATGA--ACA-TAGA-TAAAT--TCCA-TTGTTTGAG--TTTAAA-AATCTTT-TGAC---CAACATT-GT-AT-AT---GCT--A-CT--G-AAAACTTG-----CA-TTCTTTT-ACAA-TTCT--T--GCA-TC-A---TT--GA-----CAGT-----------TTTGT--GCTCTT--GT-G-CA--GGTAA--TA-TTT-C-AACAG---AGA----TCA--CA---A--AC--CCTGCAA---TA--TGTAATTGTT-GT-C---CAAAG----T-TTTATA--AGT-ACTACA------------T-AA---T---TTT-TAAT---GA-----AA------------ATACTTTA---GATAT----GC----------CATA----GCCAAAAA-TATGTAAAAGTCGATCTGAT-CATAAT-TTAAAT--CACCAT-ACTATGTTGTACA-ATATGATTT-C-TTTAATGCTACAGGCCTGATGCAT-GC--TACACT-AAAAGCCCACATTTTAT--------ACATCCAGC-TC----TGTACAAAATTCAGA-T-CATTAC-ACACG--ACA-TTTA-TTTATTTT-CCACAGACATCAG-----AAGT-AT-G--AA-TAGGA-GTT-AT-CGT---TACGACACGTAGC----TAG-ATCTTATACA--ATATAA-GTA-CC-CTCT---------------CCCCC--TTT-TTTTTTTAAAAA-CCAAATACAACATTTTTTG--GAA---TCCCCCGCATCTC-AAAC-T-ACAG-CAG-AACTGGCCCCGCAAAGCGACTT-AATGAAGGT-AATGT-GGGGAAA-CTAAGTC-TT-G---TTCATTA--TTACGTTTC-ATTTAGGTT--AAG-GTGCGTGTGTTGTGTGTGTGTGTGTGT-G-GGGGGGGGGGGGT--TATGTGC--ATAAGACGTGCT-ATTCTCA--GTC-AGAAACTTATGCA-G-TACTAATTTCT-AA-TACACA-CTGTCCACAAAGTTAAA-TTACACTATCAT-TTGA-TTGATAAAAACAAACG-TTACA-TTGAA--ACGT--GTCGATCT-GTTT-TTCCTCTCGCTTTAAA-TACTTGCAACTGC-A--ATGGGG---CTACAGCT------------CAGCACGTAAACAATTATTTTTTCTGTGAC-TTTTG-TT-CTG-AAA-TGGGGT---TAATTCAACTCCT--CCCTAGCCTTT-CTGGATA-CCGT--G-TGTAGCTGTTACA-TTTACCCCA--GC--GCAG-G-TTT-TC-CCAATTTTTCAAGCGAATTCAAAGCATTTCG--TTTAAAAACA-CTGCAA-TCTAAACACCTCCACCATG-TGCA-CCATCGGTG-TTTTG-ACGG-AG--GTCATGG--CGGAGAA-TTCTCCCGCGA-TTC-TGA-TTG-GCTGTGCGAAGATGGTA-A-CTCC-C-CTCCCCTGACGAC-GTGGGAAG
gi|7 : acATGCCACACAT-AGTGGCAA-TGGACACAAGT-GCATGCTCAACACTATAA--GTATTAGAT---GA-CTTAAATTT-TTTTTTAACATCTTGTCATGTAAT-AT-TATGTAC-CAC--AACCC-CTAACCCATTGTATTTA-GAAG-CACCTAACAAA-AA-----TGAAGGGGACTCGATAAATAGAAATTCGACGGG-TTTAATGATCA-GGGATGCATTTTCGTGGATCTATTAGACTTCTGGGACAATACATTC-CC--CAGTTCACTAACCCTCTTA-TCCTTCAA-CATTTATTAA-AAATGGATCTTCCT-TCA---T-TT-GT-CATTTTTAGG-ATTTT-TGACCCC----------------CCCCC----CCACCCCACCCCTGCCCCAAC---------------------C-GCCCATTCCCCC-CCC----TCC--CTCC----CAG-TG-----AATAG--TTTTCCCGTTCTTTGATATATATAATC-------------TCCT-CAA-ATTGC--AAAAATCTTAAATTAATGAACAG-TATTTGTTACCAA--AAACTAAA-GACCACATTAGATTAAGTGGTTTTATTGTT-GAG--TTTAAAGGAATC-T-TGACCATCAACATAGGTAATTCC-TTTCTTCAACTTGA-AAACTTTGTCGATTA-CTCTCTTAATAAGT-CA--TCCGCAGTC-AATGTTTAGAAC-TAT-GTGCAA-TAGATGTATGCTAGCTCCTGGGT-GTCAGGGGTAAATCACTTT-TCAAAAACGCAGATTCCTCATTAATTTACCACAACCTGCAATGATA--TGTACTTGTTGGT-AACTCCAAGCTTTT-TTTATAGGAGT-ACAACACAATTAGCCCACT-AAAC-AGA-TTTCTA-TCCGGAAACCAAA------------ATACTTTA---GTTAT-TTAG--------G--TATA----GTAAAcgtg
16 sequences could not be aligned to this reference sequence:
Unaligned ( gi|8 ): ATCGTTAATCGCTCGTATTTTTACCTGCGGATATATTTCACAGACAATCAGTTTGTCAAAAGACTCTAGACCCAACTTGCTCGCCAGAAAAGTTACTGTCTAGTTCAACAAATTTCACTCGCTAGTAAACGCAGAAGTAGCAACGAAATTGTGAAACCTTGCGTGCACTAGATGCTTTCGTTAGCATGATGTTACATTGGCATGTTATTTGTGCAGAAATGTTGTAGAACAAATTGTCCAATATTCATTCAGAGCAGCAACAATTCTTGCAGCTAGTGCCCAGATGCGATACCAACATTGTATTTCATTTTGTTATTTGGGATTTTA
Unaligned ( gi|9 ): CTCTTCTCACCGCTCCGCCTACTGATGGCAACGTCACATTCGCGTGTTACAGATCCTCAAGCTTGCATTAAACAACATGGCGGCGATGTCGATCTTGCACGGGTATCATGTAATCGCCTCGTTTGGCACGAATTCTTCACAGAAAGTTTGTCAAATAGGATCTGCACATTACTTCATGAGAAAGTTACCGTTTCAAAAAGTGTTCTACTGAGAAAAAGAACGCATGAAACAGCAATTGTAATCAACTGGCCACTGGGATGCTTTCCGTAGCCTGAATGCCATGTTATTACCAGTGTGCATGAAATGG
Unaligned ( gi|10 ): TTTTTAACAGCAAAGTTTGTCAAAGGATCTGACACGTTCAGAGAAAGTTGCGTTCACAAAATATTTCAATGAGTGAAAAACGCAGAAAACAGTTTAAACGTGTGCACTAGGATGCTTTCGTAGCAATGATTATATTATTGTGTGCAACGAGATGGCTGGCAGAACAATATTGTCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTCACAGAAATGGGTAAACTACGGACACCAATTTCGAGTTTATTGTTT
Unaligned ( gi|11 ): CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCGCCCCCCCCCCCCCCCCCCCCCCCCCCCCCACCCCCCCCCCCCCCCCCCCCCCCCCCCCAATGAAAATATGTATTAAAAGTTATGAAATTCATTCTTATCACAGTTTATTTCTAAAATAGTGAATTTCAGAACAAAAAGTCTGCACTAAATGAACAATATTATATAAATTTTGATAAATTTATAACTCTAGCATTGAAACTATTTGTAACA
Unaligned ( gi|12 ): TCACTCTTCCACGCTCCGCCCACTGATGGCAACGTCACACACGTGTTTACAGACTCCGTCAACTTACATGTAAACAACATGGCGAGCGATGTCGATCTTGCACCGGGTATATTGTTAATCGTCCCGTTTGACAACGAATTTTCACAGAAAAGTTTGTCAAATGATCTGACATACTTCAGAGAAAGTTACTTACGTTCACAAAATTTCACTGACTAAAA
Unaligned ( gi|13 ): CCCCACCCCCCCCCCCCCCCCCCCCCCCCCCCCCTCCCCCCCCCCCCCCCCCCCCCCCCCCCCTTTTCACCTACATATTTATAGTACATGTATTGATAACATGAAAGGTATATTATTGCAATTGATATCACAATATTTACGTATTCTAATAACAACCTTGACCTTATTGACTTAGAAATTGATGCGTAGCATCATATCT
Unaligned ( gi|14 ): CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCACGCCCCCCCCCCCCCTTTAATTTGTGCCAACTTCTTAAAAGTATACTTTTATCATACTTGCATATCATTTTTTATTTTAACATTTCAATATAAATTCATCAATCTTTATTTCATAATTAAT
Unaligned ( gi|16 ): CCCCCGCCACCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCTTAAGTATTTCACAATACACATTCACACCGAATAAATATATCTGTATTGACAAAGTTCGTTGATATCACGGAGAAATAT
Unaligned ( gi|17 ): ACTCTTTCCACGCTCCGCCCACTGATGGCAACGTCAGCACGCGTGTTTACAGACTCCGTCAACTTTACACTGTAAAACAACATGGCGATCATGTCGAATCTTGCACGGGTCATC
Unaligned ( gi|18 ): ACTCTTCCACGCTCCGCCCACTGATGGCAACGTCACTCACGTGTTTACAGACTTCGTCAGCTTACATGTAATTAACATGGCGAACGATGTCAATCGTGCATCGGGTACC
Unaligned ( gi|19 ): TTGGTATAAGTTTTTTCTATTGTAAATAGATATATTGTTTTTGCTGGTAAAAGGAATATCTTGTTGATAGGTTGGATCTATTATAAACTGG
Unaligned ( gi|20 ): GATTTAAAAATGTTTAGTTAAAAAATCCTGAATAAAATAGGTATATATTTGCTGCGTTACCGTTCCACTTATAAATGTTTCATTGCTTTC
Unaligned ( gi|21 ): CCCCCCCCCCCCCCCCCCCCCCTCAGCTAAATTCACCCAGATCTGTGGTTATAATTGGTAAGAAAAGTTTAGTGGATATCTCAATA
Unaligned ( gi|22 ): CCCCCCCCCCCCCCCCCCCTTTTTACCCTCAGCGGGATATTTTTTTATTGACATTGTATTAGATAAATTTTGGAAGGTAT
Unaligned ( gi|24 ): CACTCTTCCACGCTCCGCCCACTGGAGGCAACGTCACACACGATGTTTACAGACTCCGTACAACTTACATG
Unaligned ( gi|25 ): ATTCACTCTTCCACGCTCCGCCCACTCCGTCAACTTACATGTAAACAACATGG
Alignments
lowQualScore : 1 111 1 1 33333333 11 11 222222 222 555555555555555555 11 22 111 55555555 22222222 11 1111 1 111 111111 22222 333 1 1 2222 11 11 3333333333333333 999999999999999999999999999999 22222 1111 1 1 111111111111111 222 11 222222222 2 1 11 1 1 11 11 11 11 11 111 111 11111 1111 1111 22222 1 11111 111 555555555555555555555 11 111111 11 22222222222 222 1111 333333333333333 111 11 11 222222 111111 11 222 44444444444444444444444444 111 5555555555555555 1111 1 11 1 1 1 1 1 11 1 1 33333333 1 2222 1 1 111 1 1 1 22222 1 1 11 1 1 1 111 2222 1 11 1 1 1 111 11 11 1 111 1 222 11 111 1 1 1 1 1 11 22222 11 1 111 1 222222 111 11 1 11 1 1 1 1 1 1 11 1 333 2 1 22 11 2222 1 2222 1111 1 1111 111 333333333 3333 22 11 1 1 1 1 11 1 11 1 1 11 1 1 2 11 11 1 11 1 111 1 1111 1 1 1 1 1 1 11 11 1 1 1
lowQualScore : 3 6 999 3 3 7 99999999 88 88 0 0 222222 777 0 777777777777777777 4 8 66 0 33 777 88888888 66 99999999 99 33 6 4444 3 6 1 6 0 0 555 6 999999 44444 1 6 555 5 7 2 5 5 8888888 5 7777 5 5 44 2 00 0 5 3333333333333333 888 5 77 888 222222222222222222222222222222 4 5 33333 77 3333 3 3 666666666666666 6 555 33 222222222 6 6 0 33 0 0 11 11 11 11 8 8 11 3333 8 99 8 0 8 444 222 8 00000 2222 2222 00000 8 0 0 8 6 8 33333 8 444 666666666666666666666 1 11 666666 8 11 22222222222 555 7777 333333333333333 111 99 11 8 111111 444444 55 6 999 6 99 6 777 6 6 99999999999999999999999999 111 1111111111111111 4444 88 8 0 44 33 0 2 3 0 2 0 0 3 2 0 99 0 0 1 0 55555555 0 0000 333 0 0 2 666 0 3 0 3 0 2 55555 0 0 33 66 0 0 0 777 3 1111 0 2 77 0 0 5 222 1111 2 33 33 0 666 0 333 2 33 777 0 0 3 0 3 0 3 3 3 0 2 2 0 22 3 99999 77 0 555 0 888888 2 8 666 2 2 33 2 2 0 3 33 0 3 9 0 0 0 3 0 0 33 3 0 000 0 0 9 33 3 33 8888 0 4444 4444 0 4444 777 999999999 3 4444 55 22 0 0 0 0 33 66 0 2 33 2 2 0 3 0 33 0 2 2 0 0 22 33 0 33 2 0 3 2 777 0 3 4444 0 2 0 0 0 5 0 33 33 0 7 3 2 0 8 6 6 888 8
lowQualScore : . . ... . . . ........ .. .. . . ...... ... . .................. . . .. . .. ... ........ .. ........ .. .. . .... . . . . . . ... . ...... ..... . . ... . . . . . ....... . .... . . .. . .. . . ................ ... . .. ... .............................. . . ..... .. .... . . ............... . ... .. ......... . . . .. . . .. .. .. .. . . .. .... . .. . . . ... ... . ..... .... .... ..... . . . . . . ..... . ... ..................... . .. ...... . .. ........... ... .... ............... ... .. .. . ...... ...... .. . ... . .. . ... . . .......................... ... ................ .... .. . . .. .. . . . . . . . . . . .. . . . . ........ . .... ... . . . ... . . . . . . ..... . . .. .. . . . ... . .... . . .. . . . ... .... . .. .. . ... . ... . .. ... . . . . . . . . . . . . . .. . ..... .. . ... . ...... . . ... . . .. . . . . .. . . . . . . . . . .. . . ... . . . .. . .. .... . .... .... . .... ... ......... . .... .. .. . . . . .. .. . . .. . . . . . .. . . . . . .. .. . .. . . . . ... . . .... . . . . . . . .. .. . . . . . . . . ... .
lowQualScore : 3 7 333 3 3 3 00000000 33 33 8 8 666666 000 6 444444444444444444 6 0 00 6 44 000 99999999 88 77777777 22 33 7 2222 3 7 7 7 7 7 888 7 222222 33333 5 7 555 5 3 0 7 1 4444444 7 4444 7 7 44 5 11 1 0 1111111111111111 888 0 55 888 777777777777777777777777777777 0 7 99999 99 6666 3 3 333333333333333 7 222 88 777777777 7 7 8 88 0 0 00 00 66 00 0 0 00 8888 0 00 0 8 0 000 222 0 22222 6666 2222 00000 0 8 8 0 0 0 00000 0 000 222222222222222222222 0 00 000000 0 00 22222222222 000 0000 888888888888888 888 00 22 0 000000 333333 88 7 000 7 22 7 555 7 7 77777777777777777777777777 777 7777777777777777 2222 88 0 0 22 88 0 5 2 0 5 0 0 2 5 0 22 0 0 0 8 00000000 0 8888 888 0 0 5 222 0 2 8 2 0 5 00000 0 0 22 55 0 0 0 000 2 2222 0 5 00 0 0 5 888 5555 5 88 88 0 888 0 000 5 88 555 8 0 2 0 2 0 2 2 2 0 5 5 0 55 2 55555 00 0 000 0 222222 5 8 222 5 5 88 5 5 0 2 88 0 2 2 0 0 0 2 0 0 88 2 0 000 0 0 8 88 2 88 8888 0 8888 8888 0 8888 555 555555555 5 5555 55 55 0 0 0 0 22 55 0 5 88 5 5 0 2 0 88 0 5 5 0 0 00 88 0 22 5 0 2 5 000 0 2 2222 0 5 0 0 0 5 0 88 88 0 0 3 0 8 0 7 7 333 0
consensus : AAATGCCAAA-ATCAGTN--AA-TGGACA-AAGCAGCACGC-----ACTTTAA--GTA--AGATACAGA-C---AATATATTTTTTAAAA---------ATAATCAG-CACGTAT-CACCTAAAAC-ATAACCCATTGTATTTAAGAAGGCATCTAAAAAA-AA-----TGA--GGGACTC-ATAAAT-GAAATT----GGG-TC-AATAATCA-GGGATGCGGTGCCG--GATCTAG-AG------GGGACAATACATTT-CC--CCTTTCACTAACC-TCA-A-GCTTTCAAACACTTATAAA-AAATGAATCTTTNT-TCA-AATGTT-GT-CATTTT-AGG-ATCTT-CGACCCC----------------CCCCC---CC-CCCC-CCC---CCCCAGC---------------------CAGT---TTCTCCG-TTC----TAC--ATNCAATTCAT-TGCAAA-AATAGGCTTTT---GT--TTTGA-ACAT-CAATCATTCTGAGT----TCTT-CAGTCTTGCT-TAATATC-TAAATTNATGA--AG-TATTTGTTA-CAA--AA--TAAATGA--ACA-TAGA-TAAAT--TCTAATTGTT-GAG--TTTAAA-AAATCTT-TGAC---CAACATTTGT-ATTAT-TGGCT--AACT--G-AAACTTTG-----CA-TTCTTTT-ACAA-T-CT--T--GCAGTC-A---TT--GAA--TATAGTGC-A-T--GTGTTTGT--GCTC-T--GTG-CA--GGTAA--TA-TTT-CCAAAAG---AGA----TCA--AA---A--AC--CCTGCAA--ATA--TGTAATTGTT-GT-A---CAAAG----T-TTTATA--AGT-ACTACA-AATT-GCCC-CT-AA---TGA-TTT-TA-T---GA---CAAA------------ATACTTTA---GATAT-T--GC-------G--CATA----GCAAAAAA-TATGTAAAAGTCGATCTGAT-CATAAT-TTANAT--CACCAT-ACTATGTTGTACA-TAATGATTT-C-GTTAATGCAACAGGCCTGATGCAT-GCCGTACACT-ATAAG-ACANATTTTAT-------CACATCCAGC-TC---TTGTACAAAATTCAGGTT-CATTGC-ACACG--ACA-TTTANTTTATTTT-CCACAGACATCAG-----AAGT-AT-GT-AATTAGGA-GTT-AT-CGTA--TACGTTACGTACC----TAG-ATCTTATACA-TATATAA-GTA-CCTCTCTC-CCTCCCTACCC--CCCCC--TTT-TTTTTTT-TAAA-CCAAAT--AACACTTTTTT--GAA---TCCCGTTCATCTC-AAACTT-ACAG-CAGAAACTGGCCCCGCAAAGCGACTT-AATGAAGGTGAATGG-GGGGAAATCTATGTCATT-G-T-TTCATCA-TTTACGTTTC-ATTTAGGTTGAAGG-GTGCG-----TGTGTGTGTGTGTGTGT-G-GGGGGGGGGGGGTGGTATGTGC--ATAAGACGTGCT-ATTCTCA--GTC-AGAAACTTATGCATG-TACTATTATCT-AA-TACACA-CTGT-CAC--AGTTAAA-TTACAC-NTCAT-TTGA-TTGATAAAAACAAAC--TTACATTTGAA--ACG---ATCGATCT-GTTT-T--CTCTCGTTGT--A-TA-TTGCAACTGC-A--ATGGGG---CTACAGCTAT--NA-G-GCACAGCA---AAACAATTA-TTTTTCTGTGAC-TTTTG-TT-CTG-AAA-TGGGGTA-ATCATTC-ACTCCC--TACTAGCCTTT-CTGGATA-CCGT--G-TGTCACTGTTACA-TTT-CCCCATGGC--GCAG-G-TTTCTC-ACAATTTTTCAAGCGAATTCAAAGCATTTCG--TTT-AAAACATCTGC-A-TCT-AACACCTCCACCATG-TGCA-CCATCGGTG-TTTTGAACGG-AG--GTCATGG--CGGACAA-TTCTCCCGCGATTTC-TGACTTG-GCTGTGCGAAGATGGTA-A-CTCCAC-CTCCCCTGACGAC-GTGGAAGG
Reference ( family-1037 ) : AAATGCCAAA-ATCAGTN--AA-TGGACA-AAGCAGCACGC-----ACTTTAA--GTA--AGATACAGA-C---AATATATTTTTTAAAA---------ATAATCAG-CACGTAT-CACCTAAAAC-ATAACCCATTGTATTTAAGAAGGCATCTAAAAAA-AA-----TGA--GGGACTC-ATAAAT-GAAATT----GGG-TC-AATAATCA-GGGATGCGGTGCCG--GATCTAG-AG------GGGACAATACATTT-CC--CCTTTCACTAACC-TCA-A-GCTTTCAAACACTTATAAA-AAATGAATCTTTNT-TCA-AATGTT-GT-CATTTT-AGG-ATCTT-CGACCCC----------------CCCCC---CC-CCCC-CCC---CCCCAGC---------------------CAGT---TTCTCCG-TTC----TAC--ATNCAATTCAT-TGCAAA-AATAGGCTTTT---GT--TTTGA-ACAT-CAATCATTCTGAGT----TCTT-CAGTCTTGCT-TAATATC-TAAATTNATGA--AG-TATTTGTTA-CAA--AA--TAAATGA--ACA-TAGA-TAAAT--TCTAATTGTT-GAG--TTTAAA-AAATCTT-TGAC---CAACATTTGT-ATTAT-TGGCT--AACT--G-AAACTTTG-----CA-TTCTTTT-ACAA-T-CT--T--GCAGTC-A---TT--GAA--TATAGTGC-A-T--GTGTTTGT--GCTCTT--GTG-CA--GGTAA--TA-TTT-CCAAAAG---AGA----TCA--AA---A--AC--CCTGCAA--ATA--TGTAATTGTT-GT-A---CAAAG----T-TTTATA--AGT-ACTACA-AATT-GCCC-CT-AA---TGA-TTT-TA-T---GA---CAAA------------ATACTTTA---GATAT-T--GC-------G--CATA----GCAAAAAA-TATGTAAAAGTCGATCTGAT-CATAAT-TTANAT--CACCAT-ACTATGTTGTACA-TAATGATTT-C-GTTAATGCAACAGGCCTGATGCAT-GCCGTACACT-ATAAG-ACANATTTTAT-------CACATCCAGC-TC---TTGTACAAAATTCAGGTT-CATTGC-ACACG--ACA-TTTANTTTATTTT-CCACAGACATCAG-----AAGT-AT-GT-AATTAGGA-GTT-AT-CGTA--TACGTTACGTACC----TAG-ATCTTATACA-TATATAA-GTA-CCTCTCTC-CCTCCCTACCC--CCCCC--TTT-TTTTTTT-TAAA-CCAAAT--AACACTTTTTT--GAA---TCCCGTTCATCTC-AAACTT-ACAG-CAGAAACTGGCCCCGCAAAGCGACTT-AATGAAGGTGAATGG-GGGGAAATCTATGTCATT-G-T-TTCATCA-TTTACGTTTC-ATTTAGGTTGAAGG-GTGCG-----TGTGTGTGTGTGTGTGT-G-GGGGGGGGGGGGTGGTATGTGC--ATAAGACGTGCT-ATTCTCA--GTC-AGAAACTTATGCATG-TACTATTATCT-AA-TACACA-CTGT-CAC--AGTTAAA-TTACAC-NTCAT-TTGA-TTGATAAAAACAAAC--TTACATTTGAA--ACG---ATCGATCT-GTTT-T--CTCTCGTTGT--A-TA-TTGCAACTGC-A--ATGGGG---CTACAGCTAT--NA-G-GCACAGCA---AAACAATTA-TTTTTCTGTGAC-TTTTG-TT-CTG-AAA-TGGGGTA-ATCATTC-ACTCCC--TACTAGCCTTT-CTGGATA-CCGT--G-TGTCACTGTTACA-TTT-CCCCATGGC--GCAG-G-TTTCTC-ACAATTTTTCAAGCGAATTCAAAGCATTTCG--TTT-AAAACATCTGC-A-TCT-AACACCTCCACCATG-TGCA-CCATCGGTG-TTTTGAACGG-AG--GTCATGG--CGGACAA-TTCTCCCGCGATTTC-TGACTTG-GCTGTGCGAAGATGGTA-A-CTCCAC-CTCCCCTGACGAC-GTGGAAGG
gi|1 : ATACAG--C---AATATATCTTTTAAAA---------ATA----G-CACATAT-TACCTAAAAC--TAACCC---GTGTT---------ATCTAAATGA---------GA--GGGGCT--ATAGAT-TAAATT----GGGGCC-AATAATCA-GTGATGCAGTGCTG---ATGTAA-AG------GGGACAATAAATCT-AGAACTTGTCACCAACC-TCA-AAGCTC---AACACTTATAAA-GAATGA-----TAT-TCA-AATGTT-GT-CATTT--ATG-ATCTT-CGACACC----------------CCTCC---CC-CCC------------AGTG--------------------TAGT---TTTTCCG-TTC----TAC--ATT---TTTAT-TGCAAA-AATAGGC--TT---GT--T---A-AC---CAATCATTCTGAAT------CT-CAGTC-TGCTGTAATATC-TAAAT
gi|15 : actcttccacgctccgccctgatggcataacagtcatcacgtgttacaagactccgtcaacttacatgtaaacaacatgggtgcatgtcatgcttgcaccgtacatattgtaaatcgcctcgttttgacgacgaattgttcacagaaaagttgtcaaggatctgacacagcttgcagagaaagttacgttcactaaaatttatgagtcaataacgcagaacagcacttgtaaacgggtgctactcatagtctcgatgctttcgtaacatggatgcatgtattatgtgtacagatatggctgcagaaaaactgtcccgatatttttacagagagctacatgctgcagctagctgcatcagatggtaaactacgggaaattaaacgagtttaattttttgtgaggaatttaaaaatgttgttttagttaaaaaacttaataaaatagccctaaaacgtctgcgtttacccgttcccattttataagatgttttcatctgctgtctgcatatttatattgtatttttcagcctaactaatagccacttccacaaatattgaactacattgggatatattaaaaattggttgcttaaagatttatatagtggcattgcatatgtatcccccttttttccaggtctatctccctaatccaatatatatgctaataaaatacacggacggttcgggtggtaacacccgtcacaggcaatcacagaagggaaaaaaactcgtaacgtaattaattatagtaatagttcatttatttgtaaatgccatattgaacacagtaaacttatattttcagccagtttaaagataacatccatgggtcagcaatggaatggaacacacaaacaacatacaagtcaataaggcagataatctttatatcaaagttgatcaatgcatagtgcgattgaaattaaaattcttgtattccaaataattgtattgccctgatcatgttgagaataatgcaattcttttgtcatgtcctccttcttttacgtacttgggaaacttgcacaatcaaatctccaagcaaagtacatgtttgcaaggttaattgtaaaatatatcaaaacacgccttggtattcttttctattgtaaagagaattgttttctgctaaaaaggggaagcttgtgatactgggttgatctacataactggagttatgatcgattcgtatgctctgttgatgacgagtgtgatctctttagctaaaaaattctgctgtaccaagtatatccaaatgaatcgtaaaaaaaaaaccgacaagaatatttttttaatatgtcaaatgccaaatcaT-AGG----TC-CAACCCC----------------CCCCC---CC-CCCC-CCC---CCCCCTC------------------------T---CTCTCTG-TT-----TAT--ATGCGATTC
gi|2 : catgtttttcataataaactcAAATGCCAAA-ATCAGTT--AA-TGGACA-AAGCAGCAC-------ATTTTAACAGTA--AGATACAAA-C---AAC---TTTTTTTACA---------ATAATCAGTCATTTAT-CAGC--AAACTATAACC-ATTGTATTTAAGAAGGCA-ATAAAAAA-AAACCAATGA--GGGACTC-ATAAAT-GAAATT----GGA-TC-AATTATCAAGGGATGCGGTGGCG--GATCTAG-AG------GG-ACAATACATTT-TC--CCCTTCACTA-CC-TCA---GCTTTCAAACA-TTATAAA-A--TGAATCTTTCT-TCT---TGTT-GTTCATTTT-AGGCATCTT-CGACCCC----------------CCCCCCCC----CCC-CCC---CCCCA------------------------AGT---TT-TCCGTTTT----TAT--ATACAATTCATCTGCAAAGAATAGGCTTTT---GT--TTTGA-ACAT-CAAT--TTCTGAGT----TCTTCCAGTCTTGCTCTAATATC-TAAATTTATGA--AG-TATTTGTTA-CAA--AA--TAAATGA--ACA-TAAA-TAAAT--TCTAATTGTT-GAG--TTTAAA-AAATCTTCTGAC---CAACATTTGT-ACTAT-TGGCT--AACT--G-AAACTTTG-----CA-TTCTTTT-ACAA-T-CT--T--GCAGTC-A---TT--GAA--TATAGTGC-ATT--GTGTTTGT--GCTC-T--G-G-CA--GGTAA--TA-TTT-CCAAAAG---AGA----TCA--AA---A--AC--CCTGCAA--ATA--TGTAATTGTT-GT-A----AAAG----T-TTTATA--AGT-ACTACA-AATT-GCCC-CT-AA---TGA-TTT-TA-T---GA---CATA------------ATACTTTA---GATAC-T--GC-------G--CATA----GCAAAAAA-TATGTAAAAGTCGATCTGAT-CATAAT-TT-TAT--CACCAT-ACTATGTTGTACA-TAATGATTT-C-GTT-ATGCATCAGGCCTGATGCAT-GCCATACACT-ATAAG-ACAAATTTTAT-------CACATCCAGC-TC---TTGTACAAAATTCAGATT-CATTGC-ACACGCCACA-TTTAGTTTATTTT-CCACAGACATCAG-----AAGT-AT-GT-AATTAGGAGGTT-ATCCGTA--TACGTTACGTACC----TAG-ATCTTATACA-TATATAA-GTA-CCTCTCTC-TCTCTCTACCC--CCCCCCTTTT-TTTTTTT-TAAA-CCAAAT--AACACTTTTTT--GAA---TCCCGTTCATCTCAAAACTT-ACAGCCAGAAAC-GGCCCCGC-AAGCGACTT-AATGAAGGTGAATGG-GGGGAAATCTATGTCATT-GTT-TTCATCA-TTTACGTTTC-ATTTAGGTTGAAGG-GTGCG-----TGTGTGTGTGTGTGTGTGG-GGGGGGGGGGGGTGGTATGTGC--ATAAGAC--GCTCATTCTCA--GTC-AGAAACTTATGCATG-TACTATTATCT-AA-TACACA-CTGT-CAC--AGTTAAATTTACA--TTCAT-TTGA-TTGAATAAAACAAAC--TTACATTTGAA--ACG---ATCGATCT-GTTT-T--CTCTCGTTGT--A-TA-TTGCAACTGC-A--ATGGGG---CTACAGCTATTACA-GCGCACAGCA---AAACAATTA-TTTTTCTGTGAC-TTTTG-TT-CTG-AAA-TGGGGTA-ATCATTC-ACTCCC--TACTAGCCTTT-CTGGATA-CCGT--G-TGTCACTGTTACA-TTTCCCCCATGGC--GCAG-G-TTTCTC-ACAATTTTTCAAGCGAATTCAAAGCATTTCG--TTT-AAAACATCTGC-ACTCT-AACACCTCCACCATG-TGCAGCCATCGGTG-TTTTGAACGG-AG--GTCATGG--CGGACAACTTCTCCCGCGATTTCGTGATT---GCGTTGCGGAGATGGTACA-CTCCCA-CTCCCCTGACGACTATGGAAGGtcggtaatagtgtacagttctattatgaacattagagaacattttcaaaatcaaatattaa
gi|23 : AAAG----T-TTTATA--AGT-ACTAAA-AATT-GCCC-CTAAA---CGA-TTT-TA-T---GA---AAAA------------ATACTTTA---GAT---------------------------------A-TATGTAAAAGTCGATCT-AT-Ct
gi|26 : TTG-GCTGTGCGAAGATGGTA-A-CTCCAC-CTTCCCTGACGAC-GTGGAAG
gi|27 : aTA-A-CTCCAC-CTCCCCTGACGAC-GTGGAAGcat
gi|28 : TTG-GCTGTGCGAAGATGGTA-A-CTCCAC-CTctg
gi|3 : TTATAAATAAATGAAT-TATGTATCATAATGT------ACATT-A---------CGGCCCC----------------CCCCC---CC-CCCC-CCC---CCCCt
gi|3 : actcttccacgctccgccactggatggcaacgtcacacgcgtgtttacagactcgtcaacttgcatgtaaacaacatggcgcgcgatgtccgctcttgcaccgggtatcatgttaagtcgccttcgtttgaaccacgaaattttacagaaaagttgtccaaaggatctgacacccttctgagaaagttacgttcacaaaatttcactgagtaaaatcgcagaaacacaattgtaaaacgtgtgcaactagatgctttcgtagcatgaattgcattgttattacagtggcagaaatggtgtagaacaaattgtcccaatattttaacagagagctactgttctgaggctagtgcacagatgggtaaacacggtgcaattattgagtttaaattgttttgttaaggaatttaaaatggttgtttagttaaaaactgaataaaaaataggctatatttgcgcgttttaccgttcttttaatttttataaatgtttcatctgcttttaactaaaatcaccatcttccaaatgtgaaactatcaattgtttaagattttaaggacaagtatcccccttttccccccaggctaccctaatccaatatatttctataaatacacccgtccacacaaatccaacggatggggggAAATGCCAAA-ATCATTA--AACTCGACA-AAACAGCATGC-----ACATTAA--GTA--AG-TACAAAAC---AAT-T-TTTTTTAAAC---------ATA-TC---CATATATGCACC----AC-ATAACCCATAGTATT--AGA--GCAT--AAAAAACAA-----TGA--GGGA-TC-ATAAAT-GAAATT----GGG-TC-AATAGCAA-GGGGAGCACTGCTG--GATCTAG-AG------GGGACAATACATTT-CC--CCTT-CACTCAC--TCA---GCTT-CAAACA-TTATAAA-AA-TGAATCTTCTT-T-----TGTT-GT-CATTTT-AGG-ATC---------------------------CCCC---CC-CCCC-CCC---CCCAAG-----------------------------TTTTCCG-TTTATA-TACAAATACAATTCAT-TGCAAA-AATAGGC-TTT---G----TTGA-AC---C-ATCATTCTGAGTCTCATCTT--AGTCTTGCTCTAATATC-acacgtattaaaaatacagtagccaattaaagatagcattcctgtggggtcaatggaactgaatctaactcaaagacaagatacattaagtcatacggcaaagaatatttatcatcaaaattgatcaatgccacaagtgttgaaatataaaactttttgaattccaaataatgttctgctgcctcatcagtgttaaaataattggcaaattcttttgtcatgtccctccttctttacatacttgggaacttgcaacagatacaaacttccaacaaagtacatgttgcagttcaattggtaatatcaaatcagccttcataagtgggtatttttttccattgtaagtagaatattgtttttggtacaaagggatagctttgttgatagggttgatctaataactggagttgatgatgattcagtctgaggtatgctctgttgatgaagagtgtggtttttgactaaaaaatgctgctgtaccaagtattctcaaatgaattgtaaacaaagacagaatattttttaatactgtgcaaaatgccaaaatcattaaactcgacaaaacagcatgcacattaagtaagtacaaaacaattttttttaaacatatccatatatgcaccacataacccatagtattagagcataaaaaacaatgagggatcataaatgaaattgggtcaatagcaaggggagcactgctggatctagaggggacaatacatttccccttcactcactcagcttcaaacattataaaaatgaatcttcttttgttgtcattttaggatcccccccccccccccccaagttttccgtttatatacaaatacaattcattgcaaaaataggctttgttgaaccatcattctgagtctcatcttagtcttgctctaatatc
gi|4 : actcttccacgctccgccactggatggcaacgtcacacgcgtgtttacagactcgtcaacttgcatgtaaacaacatggcgcgcgatgtccgctcttgcaccgggtatcatgttaagtcgccttcgtttgaaccacgaaattttacagaaaagttgtccaaaggatctgacacccttctgagaaagttacgttcacaaaatttcactgagtaaaatcgcagaaacacaattgtaaaacgtgtgcaactagatgctttcgtagcatgaattgcattgttattacagtggcagaaatggtgtagaacaaattgtcccaatattttaacagagagctactgttctgaggctagtgcacagatgggtaaacacggtgcaattattgagtttaaattgttttgttaaggaatttaaaatggttgtttagttaaaaactgaataaaaaataggctatatttgcgcgttttaccgttcttttaatttttataaatgtttcatctgcttttaactaaaatcaccatcttccaaatgtgaaactatcaattgtttaagattttaaggacaagtatcccccttttccccccaggctaccctaatccaatatatttctataaatacacccgtccacacaaatccaacggatggggggggggggggggggggggggggggccgtaatgtacattatgatacataattcatttatttataaacacgtattaaaaatacagtagccaattaaagatagcattcctgtggggtcaatggaactgaatctaactcaaagacaagatacattaagtcatacggcaaagaatatttatcatcaaaattgatcaatgccacaagtgttgaaatataaaactttttgaattccaaataatgttctgctgcctcatcagtgttaaaataattggcaaattcttttgtcatgtccctccttctttacatacttgggaacttgcaacagatacaaacttccaacaaagtacatgttgcagttcaattggtaatatcaaatcagccttcataagtgggtatttttttccattgtaagtagaatattgtttttggtacaaagggatagctttgttgatagggttgatctaataactggagttgatgatgattcagtctgaggtatgctctgttgatgaagagtgtggtttttgactaaaaaatgctgctgtaccaagtattctcaaatgaattgtaaacaaagacagaatattttttaatactgtgcaGCATTTGAAAAA-AA-----TGA--GGGACTC-ATAAAT-GAAATT----GGA-TC-AATA-TCA-GGGATGCGGTGCTG--GATCTAG-AG------GGGACAATACATTTTCC--CCTCTCACTAACC-TCA---GCTTTCAA-CATTAGTAAA-AATCGAATCTTT-T-TC----TGTTTGT-CATTT--AGGCATCTTTCGACCCCCCCCCCCCCCCCCCCCCCCCC---CC-CCCC-CCC---CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCGT---TTCCCCC-CCCCATTTGT--ATACAATTCATCTGCAAAGAATAG--CTTT---GT--TTTGA-ACAT-CAAT--TTCTGAGT----TCTTCCAGTCTTGCT-TAATATC-TAAATTGATGA--AG-TATTTGTTA-CAA--AA--TAAATGA--ACA-TAAA-TAAAT--TCTAATTGTT-GAGTTTTTAAA-AAATCTT-TGAC---CAACATTTGT-ATCGTATGGCT--AACT--GCAAACTTTG-----CA-TTC-TTT-ACAA-T-CTTCT--GCAGTCAA---TT--GAAATTATAGTGC-A-T--GTGTTTGT--GCTCGT--G-G-CA--GGTAA---A-TTGACCAAAAAGC-AGA----TCA--AA---G--AC--CCTGCAA--ATAG-TGTAA-TGTT-GT-A---CAAAG----TCTTTATAC-AGTAACTACA-AATT-GCCC-CT-AAC--TGACTTT-TACT---G-----AAC------------ATACTTTA---GATATAT--GC-------G--CATA----GCAAAAAA--ATGTAAAAGTCGATCTGATCCATAAT-TAATAT--CACCATAACTATGTTGTACATTAATGATTTGC-GTTAGTGCAACAGGCCTGATGCATCGCCATACACTAATAAG-ACAATTTCTAT-------CACATCCAGC-TC---TTGTACAAAATTCA-GTT-CATTGCAACAC---CCACTTTACTTTA-TTT-CCACAGACATCAG-----AAGT-ATCGTCAATTAGGA-GTTAAT-CGTA--TACGTTACGTACC----TAGAATCTTATACA-TATATAA-GTA-CCTCTCTCTCCTTCTTACCCCTCCCCC--TTTGTTTTTTT-TAAACCCAAAT---ACACTTTTTTGGGAA---TCCCGTTCATCTC-AAACTT-AC-G-CAGAAACTGGCCCCGCAAAGCGACTGAAATGAA--TGAATGGTGGGGAAATCTATGTCATTCG-TGTTCATCATTTTACGTTGCAATTTAGGTTGAAGGTGTGCG-----TGTTTGTGT-TGTGTGT-GTGGGGGGGGGGGGTGGTATGTGCATATAGGACGT-CT-A-TCTCA--GTCAAGAAACTTATGCATG-TACTATTATCT-AATTACACAGCTGT-CAC--AGTTAAA-TTACAT-TTCATCTTGATTTGATAAAAACAAACTATCACATTTGAA--ACGGTCATCGATCTCGTTTCT--CTCTCGTTGT--AGTA-TTGCAACTGCAA--ATGGGGCGCCTACAGCTAT--TACA-GCACAGC----AAACAATTA--TTTTCTGTGACTTTTTG-TTCCTGAAAA-TGGGGTATATCA-TC-ACTCCCTTTACTAGCCTTTCCTGGATA-CCGTTCG-TGTCA-TGTTACAGTTT-CCCCATGGC--GCAGCGTTTTCTCAACAATTTTCAAAGCGAATTCAAAGCATTTCAGTTTT-AAAACATCTGC-A--CT-AACACCTCCACCATGTTGCA-CCATCGGTG-TTTTGAACGG-AGGCGTCATGGGCCGGACAA-TTCTCCCGCGACTTC-TGACTTGCGTTGCG-GAAGATGGTA-ACCTCCTCACTCCCCTGACGAC-ATGGAGG
gi|5 : ATACAG--C---AATATATCTTTTAAAA---------ATA----G-CACATAT-TACCTAAAAC--TAACCC---GTGTT---------ATCTAAATGA---------GA--GGGGCT--ATAGAT-TAAATT----GGGGCC-AATAATCA-GTGATGCAGTGCTG---ATGTAA-AG------GGGACAATAAATCT-AGAACTTGTCACCAACC-TCA-AAGCTC---AACACTTATAAA-GAATGA-----TAT-TCA-AATGTT-GT-CATTT--ATG-ATCTT-CGACACC----------------CCTCC---CC-CCC------------AGTG--------------------TAGT---TTTTCCG-TTC----TAC--ATT---TTTAT-TGCAAA-AATAGGCTT-----GT--T---A-AC---CAATCATTCTGAAT----C--T-CAGTCT-GCTGTAATATC-TAAATT--TGA--AGCTATTTGTTA-CAAGAAA--TAA-TGA--ACA-TAGA-TACAT--T---ATTATT-GATC-TTTCTA-AAATCTT-TGAC---CAACA---GT-GTGAT-TGGCT--A-CT--G-AAACGATT-----CAGTTCTT-----AACT-CT--T--GCAGTC-A---TT------------------T--GTGTGTAT--GCT--T--GTG-CA--GGTAA--TA-------GAATG---ATA----TC----------------CTGCAA--ATACATGTA-----T-GTGA---TAAAG----C-TT------AGT-ACCATA-A-TT-GACC--T-AAAGATGA-TTT-TAGT---GA---CAAAAATGTTTTAGATATGCGTTAAGTGAAAT-T--GTTTTTATAGATCATGAAGGGCAAAAAAATATATGAAGTCCGATCTGAT-CATAATCTTAAATTACACCAC-A--ATGT-GTATA-TAAT--TTT-CTGTTAATGCAATAAGTCTGAT---T-GC-GTTCACA-GTAAG-ACACATTGTATACACATGCACATCCAGCCTCAGATTGTACAAGATTTAGGTTGCATAAC-A-ACG--ACA-TT-ATTTTATATCACCA-AGGCACCAACCAGAAAGTGAT-GT-CAT-AGGA-GGT-AT-CGTAAATACGTT---TACTAGAGTAG-AT--TATAAAACACATAATGTAACC-----C-CCTCCCCAGCC--CTCCC--TTT-TTTTTC----AA-CCAAAT--CA-ATTTTTTT--GGACCATCTCGGTCATCTC-AAACTTTACAG-CAGAAACTGGCATGGCAAAGCGACGT-AATGAAGGTGAATGG-TGGTAA--TTGTTTCATT-T-T-TAAAATA-CTTACTTTTC-ATGTGGGT----GG-GTGCG------GTGTGT-------------CGGGAGGGTGGGTGGTAT-TGC--ATAAGACGTGCT-ATTCTCAAGATT-AGAA--CTAAGCAGGTTACTATTAAGTAAA-TAC-CA-CTGT-CAC--AG-TAAA-TTACA--ATCACATTGA-TTGAT-AAAACAAAC--TTACATTTGAATGACG---TGTGATCT-GTTT-TA-TTCTCATTGA--A-TA-TTGTAACTGC-AGCACGGGG---CCCCGGCAAT--GG-G-GCTCAGCAGT-AAGCAATTA--TTTTCTGTGA---TTTGCTT-CTG-CAATTGGGGTA-ATC-TTC-A--CCC--TA-TA-TCTTT-C-GGGTACCCGT--GTTGTCACTGCTA----TT-CCCCCT-GCTGGCAG-G---TCTT-ACAA--GTTCAAGCGAATCCACA--ATCTCG---TT-AAGACATCTGC-A-TCT-AACA--TCCACCATG-TGCA-CAATAGGTGTTTTTG--CGGAAG--GTCATGG--CGGACAA-TTTTCCCGCGATTt
gi|6 : ggttgatctacataactggagttatgatcgattcgtatgctctgttgatgacgagtgtgatctctttagctaaaaaattctgctgtaccaagtatatccaaatgaatcgtaaaaaaaaaaccgacaagaatatttttttaatatgtcaaatgccaaatcaA--AA--TAAATGA--ACA-TAGA-TAAAT--TCCA-TTGTTTGAG--TTTAAA-AATCTTT-TGAC---CAACATT-GT-AT-AT---GCT--A-CT--G-AAAACTTG-----CA-TTCTTTT-ACAA-TTCT--T--GCA-TC-A---TT--GA-----CAGT-----------TTTGT--GCTCTT--GTG-CA--GGTAA--TA-TTT-C-AACAG---AGA----TCA--CA---A--AC--CCTGCAA---TA--TGTAATTGTT-GT-C---CAAAG----T-TTTATA--AGT-ACTACA------------T-AA---T---TTT-TAAT---GA-----AA------------ATACTTTA---GATAT----GC----------CATA----GCCAAAAA-TATGTAAAAGTCGATCTGAT-CATAAT-TTAAAT--CACCAT-ACTATGTTGTACA-ATATGATTT-C-TTTAATGCTACAGGCCTGATGCAT-GC--TACACT-AAAAGCCCACATTTTAT--------ACATCCAGC-TC----TGTACAAAATTCAGA-T-CATTAC-ACACG--ACA-TTTA-TTTATTTT-CCACAGACATCAG-----AAGT-AT-G--AA-TAGGA-GTT-AT-CGT---TACGACACGTAGC----TAG-ATCTTATACA--ATATAA-GTA-CC-CTCT---------------CCCCC--TTT-TTTTTTTAAAAA-CCAAATACAACATTTTTTG--GAA---TCCCCCGCATCTC-AAAC-T-ACAG-CAG-AACTGGCCCCGCAAAGCGACTT-AATGAAGGT-AATGT-GGGGAAA-CTAAGTC-TT-G---TTCATTA--TTACGTTTC-ATTTAGGTT--AAG-GTGCGTGTGTTGTGTGTGTGTGTGTGT-G-GGGGGGGGGGGGT--TATGTGC--ATAAGACGTGCT-ATTCTCA--GTC-AGAAACTTATGCA-G-TACTAATTTCT-AA-TACACA-CTGTCCACAAAGTTAAA-TTACACTATCAT-TTGA-TTGATAAAAACAAACG-TTACA-TTGAA--ACGT--GTCGATCT-GTTT-TTCCTCTCGCTTTAAA-TACTTGCAACTGC-A--ATGGGG---CTACAGCT------------CAGCACGTAAACAATTATTTTTTCTGTGAC-TTTTG-TT-CTG-AAA-TGGGGT---TAATTCAACTCCT--CCCTAGCCTTT-CTGGATA-CCGT--G-TGTAGCTGTTACA-TTTACCCCA--GC--GCAG-G-TTT-TC-CCAATTTTTCAAGCGAATTCAAAGCATTTCG--TTTAAAAACA-CTGCAA-TCTAAACACCTCCACCATG-TGCA-CCATCGGTG-TTTTG-ACGG-AG--GTCATGG--CGGAGAA-TTCTCCCGCGA-TTC-TGA-TTG-GCTGTGCGAAGATGGTA-A-CTCC-C-CTCCCCTGACGAC-GTGGGAAG
gi|7 : acATGCCACACAT-AGTGGCAA-TGGACACAAGT-GCATGCTCAACACTATAA--GTATTAGAT---GA-CTTAAATTT-TTTTTTAACATCTTGTCATGTAAT-AT-TATGTAC-CAC--AACCC-CTAACCCATTGTATTTA-GAAG-CACCTAACAAA-AA-----TGAAGGGGACTCGATAAATAGAAATTCGACGGG-TTTAATGATCA-GGGATGCATTTTCGTGGATCTATTAGACTTCTGGGACAATACATTC-CC--CAGTTCACTAACCCTCTTA-TCCTTCAA-CATTTATTAA-AAATGGATCTTCCT-TCA---T-TT-GT-CATTTTTAGG-ATTTT-TGACCCC----------------CCCCC---CCACCCCACCCCTGCCCCAAC---------------------C-GCCCATTCCCCC-CCC----TCC--CTCC----CAG-TG-----AATAG--TTTTCCCGTTCTTTGATATATATAATC-------------TCCT-CAA-ATTGC--AAAAATCTTAAATTAATGAACAG-TATTTGTTACCAA--AAACTAAA-GACCACATTAGATTAAGTGGTTTTATTGTT-GAG--TTTAAAGGAATC-T-TGACCATCAACATAGGTAATTCC-TTTCTTCAACTTGA-AAACTTTGTCGATTA-CTCTCTTAATAAGT-CA--TCCGCAGTC-AATGTTTAGAAC-TAT-GTGCAA-TAGATGTATGCTAGCTCCTGGGTGTCAGGGGTAAATCACTTT-TCAAAAACGCAGATTCCTCATTAATTTACCACAACCTGCAATGATA--TGTACTTGTTGGT-AACTCCAAGCTTTT-TTTATAGGAGT-ACAACACAATTAGCCCACT-AAAC-AGA-TTTCTA-TCCGGAAACCAAA------------ATACTTTA---GTTAT-TTAG--------G--TATA----GTAAAcgtg
16 sequences could not be aligned to this reference sequence:
Unaligned ( gi|8 ): ATCGTTAATCGCTCGTATTTTTACCTGCGGATATATTTCACAGACAATCAGTTTGTCAAAAGACTCTAGACCCAACTTGCTCGCCAGAAAAGTTACTGTCTAGTTCAACAAATTTCACTCGCTAGTAAACGCAGAAGTAGCAACGAAATTGTGAAACCTTGCGTGCACTAGATGCTTTCGTTAGCATGATGTTACATTGGCATGTTATTTGTGCAGAAATGTTGTAGAACAAATTGTCCAATATTCATTCAGAGCAGCAACAATTCTTGCAGCTAGTGCCCAGATGCGATACCAACATTGTATTTCATTTTGTTATTTGGGATTTTA
Unaligned ( gi|9 ): CTCTTCTCACCGCTCCGCCTACTGATGGCAACGTCACATTCGCGTGTTACAGATCCTCAAGCTTGCATTAAACAACATGGCGGCGATGTCGATCTTGCACGGGTATCATGTAATCGCCTCGTTTGGCACGAATTCTTCACAGAAAGTTTGTCAAATAGGATCTGCACATTACTTCATGAGAAAGTTACCGTTTCAAAAAGTGTTCTACTGAGAAAAAGAACGCATGAAACAGCAATTGTAATCAACTGGCCACTGGGATGCTTTCCGTAGCCTGAATGCCATGTTATTACCAGTGTGCATGAAATGG
Unaligned ( gi|10 ): TTTTTAACAGCAAAGTTTGTCAAAGGATCTGACACGTTCAGAGAAAGTTGCGTTCACAAAATATTTCAATGAGTGAAAAACGCAGAAAACAGTTTAAACGTGTGCACTAGGATGCTTTCGTAGCAATGATTATATTATTGTGTGCAACGAGATGGCTGGCAGAACAATATTGTCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTCACAGAAATGGGTAAACTACGGACACCAATTTCGAGTTTATTGTTT
Unaligned ( gi|11 ): CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCGCCCCCCCCCCCCCCCCCCCCCCCCCCCCCACCCCCCCCCCCCCCCCCCCCCCCCCCCCAATGAAAATATGTATTAAAAGTTATGAAATTCATTCTTATCACAGTTTATTTCTAAAATAGTGAATTTCAGAACAAAAAGTCTGCACTAAATGAACAATATTATATAAATTTTGATAAATTTATAACTCTAGCATTGAAACTATTTGTAACA
Unaligned ( gi|12 ): TCACTCTTCCACGCTCCGCCCACTGATGGCAACGTCACACACGTGTTTACAGACTCCGTCAACTTACATGTAAACAACATGGCGAGCGATGTCGATCTTGCACCGGGTATATTGTTAATCGTCCCGTTTGACAACGAATTTTCACAGAAAAGTTTGTCAAATGATCTGACATACTTCAGAGAAAGTTACTTACGTTCACAAAATTTCACTGACTAAAA
Unaligned ( gi|13 ): CCCCACCCCCCCCCCCCCCCCCCCCCCCCCCCCCTCCCCCCCCCCCCCCCCCCCCCCCCCCCCTTTTCACCTACATATTTATAGTACATGTATTGATAACATGAAAGGTATATTATTGCAATTGATATCACAATATTTACGTATTCTAATAACAACCTTGACCTTATTGACTTAGAAATTGATGCGTAGCATCATATCT
Unaligned ( gi|14 ): CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCACGCCCCCCCCCCCCCTTTAATTTGTGCCAACTTCTTAAAAGTATACTTTTATCATACTTGCATATCATTTTTTATTTTAACATTTCAATATAAATTCATCAATCTTTATTTCATAATTAAT
Unaligned ( gi|16 ): CCCCCGCCACCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCTTAAGTATTTCACAATACACATTCACACCGAATAAATATATCTGTATTGACAAAGTTCGTTGATATCACGGAGAAATAT
Unaligned ( gi|17 ): ACTCTTTCCACGCTCCGCCCACTGATGGCAACGTCAGCACGCGTGTTTACAGACTCCGTCAACTTTACACTGTAAAACAACATGGCGATCATGTCGAATCTTGCACGGGTCATC
Unaligned ( gi|18 ): ACTCTTCCACGCTCCGCCCACTGATGGCAACGTCACTCACGTGTTTACAGACTTCGTCAGCTTACATGTAATTAACATGGCGAACGATGTCAATCGTGCATCGGGTACC
Unaligned ( gi|19 ): TTGGTATAAGTTTTTTCTATTGTAAATAGATATATTGTTTTTGCTGGTAAAAGGAATATCTTGTTGATAGGTTGGATCTATTATAAACTGG
Unaligned ( gi|20 ): GATTTAAAAATGTTTAGTTAAAAAATCCTGAATAAAATAGGTATATATTTGCTGCGTTACCGTTCCACTTATAAATGTTTCATTGCTTTC
Unaligned ( gi|21 ): CCCCCCCCCCCCCCCCCCCCCCTCAGCTAAATTCACCCAGATCTGTGGTTATAATTGGTAAGAAAAGTTTAGTGGATATCTCAATA
Unaligned ( gi|22 ): CCCCCCCCCCCCCCCCCCCTTTTTACCCTCAGCGGGATATTTTTTTATTGACATTGTATTAGATAAATTTTGGAAGGTAT
Unaligned ( gi|24 ): CACTCTTCCACGCTCCGCCCACTGGAGGCAACGTCACACACGATGTTTACAGACTCCGTACAACTTACATG
Unaligned ( gi|25 ): ATTCACTCTTCCACGCTCCGCCCACTCCGTCAACTTACATGTAAACAACATGG
Alignments
lowQualScore : 1 111 1 1 33333333 11 11 222222 222 555555555555555555 11 22 111 55555555 22222222 11 1111 1 111 111111 22222 333 1 1 2222 11 11 3333333333333333 1111 999999999999999999999999999999 22222 1111 1 1 111111111111111 222 11 222222222 2 1 11 1 1 11 11 11 11 11 111 111 11111 1111 1111 22222 1 11111 111 555555555555555555555 11 2222 11 22222222222 222 1111 333333333333333 111 11 11 222222 111111 11 222 44444444444444444444444444 111 5555555555555555 1111 1 11 1 1 1 1 1 11 1 1 33333333 1 2222 1 1 111 1 1 1 22222 1 1 11 1 1 1 111 2222 1 11 1 1 1 111 11 11 1 111 1 222 11 111 1 1 1 1 1 11 22222 11 1 111 1 222222 111 11 1 11 1 1 1 1 1 1 11 1 333 2 1 22 11 2222 1 2222 1111 1 1111 111 333333333 3333 22 11 1 1 1 1 11 1 11 1 1 11 1 1 2 11 11 1 11 1 111 1 1111 1 1 1 1 1 1 11 11 1 1 1
lowQualScore : 3 6 999 3 3 7 99999999 88 88 0 0 222222 777 0 777777777777777777 4 8 66 0 33 777 88888888 66 99999999 99 33 6 4444 3 6 1 6 0 0 555 6 999999 44444 1 6 555 5 7 2 5 5 8888888 5 7777 5 5 44 2 00 0 5 3333333333333333 0000 5 77 888 222222222222222222222222222222 4 5 33333 77 3333 3 3 666666666666666 6 555 33 222222222 6 6 0 33 0 0 11 11 11 11 8 8 11 3333 8 99 8 0 8 444 222 8 00000 2222 2222 00000 8 0 0 8 6 8 33333 8 444 666666666666666666666 1 11 5555 88 8 11 22222222222 555 7777 333333333333333 111 99 11 8 111111 444444 55 6 999 6 99 6 777 6 6 99999999999999999999999999 111 1111111111111111 4444 88 8 0 44 33 0 2 3 0 2 0 0 3 2 0 99 0 0 1 0 55555555 0 0000 333 0 0 2 666 0 3 0 3 0 2 55555 0 0 33 66 0 0 0 777 3 1111 0 2 77 0 0 5 222 1111 2 33 33 0 666 0 333 2 33 777 0 0 3 0 3 0 3 3 3 0 2 2 0 22 3 99999 77 0 555 0 888888 2 8 666 2 2 33 2 2 0 3 33 0 3 9 0 0 0 3 0 0 33 3 0 000 0 0 9 33 3 33 8888 0 4444 4444 0 4444 777 999999999 3 4444 55 22 0 0 0 0 33 66 0 2 33 2 2 0 3 0 33 0 2 2 0 0 22 33 0 33 2 0 3 2 777 0 3 4444 0 2 0 0 0 5 0 33 33 0 7 3 2 0 8 6 6 888 8
lowQualScore : . . ... . . . ........ .. .. . . ...... ... . .................. . . .. . .. ... ........ .. ........ .. .. . .... . . . . . . ... . ...... ..... . . ... . . . . . ....... . .... . . .. . .. . . ................ .... . .. ... .............................. . . ..... .. .... . . ............... . ... .. ......... . . . .. . . .. .. .. .. . . .. .... . .. . . . ... ... . ..... .... .... ..... . . . . . . ..... . ... ..................... . .. .... .. . .. ........... ... .... ............... ... .. .. . ...... ...... .. . ... . .. . ... . . .......................... ... ................ .... .. . . .. .. . . . . . . . . . . .. . . . . ........ . .... ... . . . ... . . . . . . ..... . . .. .. . . . ... . .... . . .. . . . ... .... . .. .. . ... . ... . .. ... . . . . . . . . . . . . . .. . ..... .. . ... . ...... . . ... . . .. . . . . .. . . . . . . . . . .. . . ... . . . .. . .. .... . .... .... . .... ... ......... . .... .. .. . . . . .. .. . . .. . . . . . .. . . . . . .. .. . .. . . . . ... . . .... . . . . . . . .. .. . . . . . . . . ... .
lowQualScore : 3 7 333 3 3 3 00000000 33 33 8 8 666666 000 6 444444444444444444 6 0 00 6 44 000 99999999 88 77777777 22 33 7 2222 3 7 7 7 7 7 888 7 222222 33333 5 7 555 5 3 0 7 1 4444444 7 4444 7 7 44 5 11 1 0 1111111111111111 6666 0 55 888 777777777777777777777777777777 0 7 99999 99 6666 3 3 333333333333333 7 222 88 777777777 7 7 8 88 0 0 00 00 66 00 0 0 00 8888 0 00 0 8 0 000 222 0 22222 6666 2222 00000 0 8 8 0 0 0 00000 0 000 222222222222222222222 0 00 8888 88 0 00 22222222222 000 0000 888888888888888 888 00 22 0 000000 333333 88 7 000 7 22 7 555 7 7 77777777777777777777777777 777 7777777777777777 2222 88 0 0 22 88 0 5 2 0 5 0 0 2 5 0 22 0 0 0 8 00000000 0 8888 888 0 0 5 222 0 2 8 2 0 5 00000 0 0 22 55 0 0 0 000 2 2222 0 5 00 0 0 5 888 5555 5 88 88 0 888 0 000 5 88 555 8 0 2 0 2 0 2 2 2 0 5 5 0 55 2 55555 00 0 000 0 222222 5 8 222 5 5 88 5 5 0 2 88 0 2 2 0 0 0 2 0 0 88 2 0 000 0 0 8 88 2 88 8888 0 8888 8888 0 8888 555 555555555 5 5555 55 55 0 0 0 0 22 55 0 5 88 5 5 0 2 0 88 0 5 5 0 0 00 88 0 22 5 0 2 5 000 0 2 2222 0 5 0 0 0 5 0 88 88 0 0 3 0 8 0 7 7 333 0
consensus : AAATGCCAAA-ATCAGTN--AA-TGGACA-AAGCAGCACGC-----ACTTTAA--GTA--AGATACAGA-C---AATATATTTTTTAAAA---------ATAATCAG-CACGTAT-CACCTAAAAC-ATAACCCATTGTATTTAAGAAGGCATCTAAAAAA-AA-----TGA--GGGACTC-ATAAAT-GAAATT----GGG-TC-AATAATCA-GGGATGCGGTGCCG--GATCTAG-AG------GGGACAATACATTT-CC--CCTTTCACTAACC-TCA-A-GCTTTCAAACACTTATAAA-AAATGAATCTTTNT-TCA-AATGTT-GT-CATTTT-AGG-ATCTT-CGACCCC----------------CCCCC----CC-CCCC-CCC---CCCCAGC---------------------CAGT---TTCTCCG-TTC----TAC--ATNCAATTCAT-TGCAAA-AATAGGCTTTT---GT--TTTGA-ACAT-CAATCATTCTGAGT----TCTT-CAGTCTTGCT-TAATATC-TAAATTNATGA--AG-TATTTGTTA-CAA--AA--TAAATGA--ACA-TAGA-TAAAT--TCTAATTGTT-GAG--TTTAAA-AAATCTT-TGAC---CAACATTTGT-ATTAT-TGGCT--AACT--G-AAACTTTG-----CA-TTCTTTT-ACAA-T-CT--T--GCAGTC-A---TT--GAA--TATAGTGC-A-T--GTGTTTGT--GCTCTT--GT-G-CA--GGTAA--TA-TTT-CCAAAAG---AGA----TCA--AA---A--AC--CCTGCAA--ATA--TGTAATTGTT-GT-A---CAAAG----T-TTTATA--AGT-ACTACA-AATT-GCCC-CT-AA---TGA-TTT-TA-T---GA---CAAA------------ATACTTTA---GATAT-T--GC-------G--CATA----GCAAAAAA-TATGTAAAAGTCGATCTGAT-CATAAT-TTANAT--CACCAT-ACTATGTTGTACA-TAATGATTT-C-GTTAATGCAACAGGCCTGATGCAT-GCCGTACACT-ATAAG-ACANATTTTAT-------CACATCCAGC-TC---TTGTACAAAATTCAGGTT-CATTGC-ACACG--ACA-TTTANTTTATTTT-CCACAGACATCAG-----AAGT-AT-GT-AATTAGGA-GTT-AT-CGTA--TACGTTACGTACC----TAG-ATCTTATACA-TATATAA-GTA-CCTCTCTC-CCTCCCTACCC--CCCCC--TTT-TTTTTTT-TAAA-CCAAAT--AACACTTTTTT--GAA---TCCCGTTCATCTC-AAACTT-ACAG-CAGAAACTGGCCCCGCAAAGCGACTT-AATGAAGGTGAATGG-GGGGAAATCTATGTCATT-G-T-TTCATCA-TTTACGTTTC-ATTTAGGTTGAAGG-GTGCG-----TGTGTGTGTGTGTGTGT-G-GGGGGGGGGGGGTGGTATGTGC--ATAAGACGTGCT-ATTCTCA--GTC-AGAAACTTATGCATG-TACTATTATCT-AA-TACACA-CTGT-CAC--AGTTAAA-TTACAC-NTCAT-TTGA-TTGATAAAAACAAAC--TTACATTTGAA--ACG---ATCGATCT-GTTT-T--CTCTCGTTGT--A-TA-TTGCAACTGC-A--ATGGGG---CTACAGCTAT--NA-G-GCACAGCA---AAACAATTA-TTTTTCTGTGAC-TTTTG-TT-CTG-AAA-TGGGGTA-ATCATTC-ACTCCC--TACTAGCCTTT-CTGGATA-CCGT--G-TGTCACTGTTACA-TTT-CCCCATGGC--GCAG-G-TTTCTC-ACAATTTTTCAAGCGAATTCAAAGCATTTCG--TTT-AAAACATCTGC-A-TCT-AACACCTCCACCATG-TGCA-CCATCGGTG-TTTTGAACGG-AG--GTCATGG--CGGACAA-TTCTCCCGCGATTTC-TGACTTG-GCTGTGCGAAGATGGTA-A-CTCCAC-CTCCCCTGACGAC-GTGGAAGG
Reference ( family-1037 ) : AAATGCCAAA-ATCAGTN--AA-TGGACA-AAGCAGCACGC-----ACTTTAA--GTA--AGATACAGA-C---AATATATTTTTTAAAA---------ATAATCAG-CACGTAT-CACCTAAAAC-ATAACCCATTGTATTTAAGAAGGCATCTAAAAAA-AA-----TGA--GGGACTC-ATAAAT-GAAATT----GGG-TC-AATAATCA-GGGATGCGGTGCCG--GATCTAG-AG------GGGACAATACATTT-CC--CCTTTCACTAACC-TCA-A-GCTTTCAAACACTTATAAA-AAATGAATCTTTNT-TCA-AATGTT-GT-CATTTT-AGG-ATCTT-CGACCCC----------------CCCCC----CC-CCCC-CCC---CCCCAGC---------------------CAGT---TTCTCCG-TTC----TAC--ATNCAATTCAT-TGCAAA-AATAGGCTTTT---GT--TTTGA-ACAT-CAATCATTCTGAGT----TCTT-CAGTCTTGCT-TAATATC-TAAATTNATGA--AG-TATTTGTTA-CAA--AA--TAAATGA--ACA-TAGA-TAAAT--TCTAATTGTT-GAG--TTTAAA-AAATCTT-TGAC---CAACATTTGT-ATTAT-TGGCT--AACT--G-AAACTTTG-----CA-TTCTTTT-ACAA-T-CT--T--GCAGTC-A---TT--GAA--TATAGTGC-A-T--GTGTTTGT--GCTCT---GT-G-CA--GGTAA--TA-TTT-CCAAAAG---AGA----TCA--AA---A--AC--CCTGCAA--ATA--TGTAATTGTT-GT-A---CAAAG----T-TTTATA--AGT-ACTACA-AATT-GCCC-CT-AA---TGA-TTT-TA-T---GA---CAAA------------ATACTTTA---GATAT-T--GC-------G--CATA----GCAAAAAA-TATGTAAAAGTCGATCTGAT-CATAAT-TTANAT--CACCAT-ACTATGTTGTACA-TAATGATTT-C-GTTAATGCAACAGGCCTGATGCAT-GCCGTACACT-ATAAG-ACANATTTTAT-------CACATCCAGC-TC---TTGTACAAAATTCAGGTT-CATTGC-ACACG--ACA-TTTANTTTATTTT-CCACAGACATCAG-----AAGT-AT-GT-AATTAGGA-GTT-AT-CGTA--TACGTTACGTACC----TAG-ATCTTATACA-TATATAA-GTA-CCTCTCTC-CCTCCCTACCC--CCCCC--TTT-TTTTTTT-TAAA-CCAAAT--AACACTTTTTT--GAA---TCCCGTTCATCTC-AAACTT-ACAG-CAGAAACTGGCCCCGCAAAGCGACTT-AATGAAGGTGAATGG-GGGGAAATCTATGTCATT-G-T-TTCATCA-TTTACGTTTC-ATTTAGGTTGAAGG-GTGCG-----TGTGTGTGTGTGTGTGT-G-GGGGGGGGGGGGTGGTATGTGC--ATAAGACGTGCT-ATTCTCA--GTC-AGAAACTTATGCATG-TACTATTATCT-AA-TACACA-CTGT-CAC--AGTTAAA-TTACAC-NTCAT-TTGA-TTGATAAAAACAAAC--TTACATTTGAA--ACG---ATCGATCT-GTTT-T--CTCTCGTTGT--A-TA-TTGCAACTGC-A--ATGGGG---CTACAGCTAT--NA-G-GCACAGCA---AAACAATTA-TTTTTCTGTGAC-TTTTG-TT-CTG-AAA-TGGGGTA-ATCATTC-ACTCCC--TACTAGCCTTT-CTGGATA-CCGT--G-TGTCACTGTTACA-TTT-CCCCATGGC--GCAG-G-TTTCTC-ACAATTTTTCAAGCGAATTCAAAGCATTTCG--TTT-AAAACATCTGC-A-TCT-AACACCTCCACCATG-TGCA-CCATCGGTG-TTTTGAACGG-AG--GTCATGG--CGGACAA-TTCTCCCGCGATTTC-TGACTTG-GCTGTGCGAAGATGGTA-A-CTCCAC-CTCCCCTGACGAC-GTGGAAGG
gi|1 : ATACAG--C---AATATATCTTTTAAAA---------ATA----G-CACATAT-TACCTAAAAC--TAACCC---GTGTT---------ATCTAAATGA---------GA--GGGGCT--ATAGAT-TAAATT----GGGGCC-AATAATCA-GTGATGCAGTGCTG---ATGTAA-AG------GGGACAATAAATCT-AGAACTTGTCACCAACC-TCA-AAGCTC---AACACTTATAAA-GAATGA-----TAT-TCA-AATGTT-GT-CATTT--ATG-ATCTT-CGACACC----------------CCTCC----CC-CCC------------AGTG--------------------TAGT---TTTTCCG-TTC----TAC--ATT---TTTAT-TGCAAA-AATAGGC--TT---GT--T---A-AC---CAATCATTCTGAAT------CT-CAGTC-TGCTGTAATATC-TAAAT
gi|15 : actcttccacgctccgccctgatggcataacagtcatcacgtgttacaagactccgtcaacttacatgtaaacaacatgggtgcatgtcatgcttgcaccgtacatattgtaaatcgcctcgttttgacgacgaattgttcacagaaaagttgtcaaggatctgacacagcttgcagagaaagttacgttcactaaaatttatgagtcaataacgcagaacagcacttgtaaacgggtgctactcatagtctcgatgctttcgtaacatggatgcatgtattatgtgtacagatatggctgcagaaaaactgtcccgatatttttacagagagctacatgctgcagctagctgcatcagatggtaaactacgggaaattaaacgagtttaattttttgtgaggaatttaaaaatgttgttttagttaaaaaacttaataaaatagccctaaaacgtctgcgtttacccgttcccattttataagatgttttcatctgctgtctgcatatttatattgtatttttcagcctaactaatagccacttccacaaatattgaactacattgggatatattaaaaattggttgcttaaagatttatatagtggcattgcatatgtatcccccttttttccaggtctatctccctaatccaatatatatgctaataaaatacacggacggttcgggtggtaacacccgtcacaggcaatcacagaagggaaaaaaactcgtaacgtaattaattatagtaatagttcatttatttgtaaatgccatattgaacacagtaaacttatattttcagccagtttaaagataacatccatgggtcagcaatggaatggaacacacaaacaacatacaagtcaataaggcagataatctttatatcaaagttgatcaatgcatagtgcgattgaaattaaaattcttgtattccaaataattgtattgccctgatcatgttgagaataatgcaattcttttgtcatgtcctccttcttttacgtacttgggaaacttgcacaatcaaatctccaagcaaagtacatgtttgcaaggttaattgtaaaatatatcaaaacacgccttggtattcttttctattgtaaagagaattgttttctgctaaaaaggggaagcttgtgatactgggttgatctacataactggagttatgatcgattcgtatgctctgttgatgacgagtgtgatctctttagctaaaaaattctgctgtaccaagtatatccaaatgaatcgtaaaaaaaaaaccgacaagaatatttttttaatatgtcaaatgccaaatcaT-AGG----TC-CAACCCC----------------CCCCC----CC-CCCC-CCC---CCCCCTC------------------------T---CTCTCTG-TT-----TAT--ATGCGATTC
gi|2 : catgtttttcataataaactcAAATGCCAAA-ATCAGTT--AA-TGGACA-AAGCAGCAC-------ATTTTAACAGTA--AGATACAAA-C---AAC---TTTTTTTACA---------ATAATCAGTCATTTAT-CAGC--AAACTATAACC-ATTGTATTTAAGAAGGCA-ATAAAAAA-AAACCAATGA--GGGACTC-ATAAAT-GAAATT----GGA-TC-AATTATCAAGGGATGCGGTGGCG--GATCTAG-AG------GG-ACAATACATTT-TC--CCCTTCACTA-CC-TCA---GCTTTCAAACA-TTATAAA-A--TGAATCTTTCT-TCT---TGTT-GTTCATTTT-AGGCATCTT-CGACCCC----------------CCCCCCCCC-----CC-CCC---CCCCA------------------------AGT---TT-TCCGTTTT----TAT--ATACAATTCATCTGCAAAGAATAGGCTTTT---GT--TTTGA-ACAT-CAAT--TTCTGAGT----TCTTCCAGTCTTGCTCTAATATC-TAAATTTATGA--AG-TATTTGTTA-CAA--AA--TAAATGA--ACA-TAAA-TAAAT--TCTAATTGTT-GAG--TTTAAA-AAATCTTCTGAC---CAACATTTGT-ACTAT-TGGCT--AACT--G-AAACTTTG-----CA-TTCTTTT-ACAA-T-CT--T--GCAGTC-A---TT--GAA--TATAGTGC-ATT--GTGTTTGT--GCTCT---G--G-CA--GGTAA--TA-TTT-CCAAAAG---AGA----TCA--AA---A--AC--CCTGCAA--ATA--TGTAATTGTT-GT-A----AAAG----T-TTTATA--AGT-ACTACA-AATT-GCCC-CT-AA---TGA-TTT-TA-T---GA---CATA------------ATACTTTA---GATAC-T--GC-------G--CATA----GCAAAAAA-TATGTAAAAGTCGATCTGAT-CATAAT-TT-TAT--CACCAT-ACTATGTTGTACA-TAATGATTT-C-GTT-ATGCATCAGGCCTGATGCAT-GCCATACACT-ATAAG-ACAAATTTTAT-------CACATCCAGC-TC---TTGTACAAAATTCAGATT-CATTGC-ACACGCCACA-TTTAGTTTATTTT-CCACAGACATCAG-----AAGT-AT-GT-AATTAGGAGGTT-ATCCGTA--TACGTTACGTACC----TAG-ATCTTATACA-TATATAA-GTA-CCTCTCTC-TCTCTCTACCC--CCCCCCTTTT-TTTTTTT-TAAA-CCAAAT--AACACTTTTTT--GAA---TCCCGTTCATCTCAAAACTT-ACAGCCAGAAAC-GGCCCCGC-AAGCGACTT-AATGAAGGTGAATGG-GGGGAAATCTATGTCATT-GTT-TTCATCA-TTTACGTTTC-ATTTAGGTTGAAGG-GTGCG-----TGTGTGTGTGTGTGTGTGG-GGGGGGGGGGGGTGGTATGTGC--ATAAGAC--GCTCATTCTCA--GTC-AGAAACTTATGCATG-TACTATTATCT-AA-TACACA-CTGT-CAC--AGTTAAATTTACA--TTCAT-TTGA-TTGAATAAAACAAAC--TTACATTTGAA--ACG---ATCGATCT-GTTT-T--CTCTCGTTGT--A-TA-TTGCAACTGC-A--ATGGGG---CTACAGCTATTACA-GCGCACAGCA---AAACAATTA-TTTTTCTGTGAC-TTTTG-TT-CTG-AAA-TGGGGTA-ATCATTC-ACTCCC--TACTAGCCTTT-CTGGATA-CCGT--G-TGTCACTGTTACA-TTTCCCCCATGGC--GCAG-G-TTTCTC-ACAATTTTTCAAGCGAATTCAAAGCATTTCG--TTT-AAAACATCTGC-ACTCT-AACACCTCCACCATG-TGCAGCCATCGGTG-TTTTGAACGG-AG--GTCATGG--CGGACAACTTCTCCCGCGATTTCGTGATT---GCGTTGCGGAGATGGTACA-CTCCCA-CTCCCCTGACGACTATGGAAGGtcggtaatagtgtacagttctattatgaacattagagaacattttcaaaatcaaatattaa
gi|23 : AAAG----T-TTTATA--AGT-ACTAAA-AATT-GCCC-CTAAA---CGA-TTT-TA-T---GA---AAAA------------ATACTTTA---GAT---------------------------------A-TATGTAAAAGTCGATCT-AT-Ct
gi|26 : TTG-GCTGTGCGAAGATGGTA-A-CTCCAC-CTTCCCTGACGAC-GTGGAAG
gi|27 : aTA-A-CTCCAC-CTCCCCTGACGAC-GTGGAAGcat
gi|28 : TTG-GCTGTGCGAAGATGGTA-A-CTCCAC-CTctg
gi|3 : TTATAAATAAATGAAT-TATGTATCATAATGT------ACATT-A---------CGGCCCC----------------CCCCC----CC-CCCC-CCC---CCCCt
gi|3 : actcttccacgctccgccactggatggcaacgtcacacgcgtgtttacagactcgtcaacttgcatgtaaacaacatggcgcgcgatgtccgctcttgcaccgggtatcatgttaagtcgccttcgtttgaaccacgaaattttacagaaaagttgtccaaaggatctgacacccttctgagaaagttacgttcacaaaatttcactgagtaaaatcgcagaaacacaattgtaaaacgtgtgcaactagatgctttcgtagcatgaattgcattgttattacagtggcagaaatggtgtagaacaaattgtcccaatattttaacagagagctactgttctgaggctagtgcacagatgggtaaacacggtgcaattattgagtttaaattgttttgttaaggaatttaaaatggttgtttagttaaaaactgaataaaaaataggctatatttgcgcgttttaccgttcttttaatttttataaatgtttcatctgcttttaactaaaatcaccatcttccaaatgtgaaactatcaattgtttaagattttaaggacaagtatcccccttttccccccaggctaccctaatccaatatatttctataaatacacccgtccacacaaatccaacggatggggggAAATGCCAAA-ATCATTA--AACTCGACA-AAACAGCATGC-----ACATTAA--GTA--AG-TACAAAAC---AAT-T-TTTTTTAAAC---------ATA-TC---CATATATGCACC----AC-ATAACCCATAGTATT--AGA--GCAT--AAAAAACAA-----TGA--GGGA-TC-ATAAAT-GAAATT----GGG-TC-AATAGCAA-GGGGAGCACTGCTG--GATCTAG-AG------GGGACAATACATTT-CC--CCTT-CACTCAC--TCA---GCTT-CAAACA-TTATAAA-AA-TGAATCTTCTT-T-----TGTT-GT-CATTTT-AGG-ATC---------------------------CCCC----CC-CCCC-CCC---CCCAAG-----------------------------TTTTCCG-TTTATA-TACAAATACAATTCAT-TGCAAA-AATAGGC-TTT---G----TTGA-AC---C-ATCATTCTGAGTCTCATCTT--AGTCTTGCTCTAATATC-acacgtattaaaaatacagtagccaattaaagatagcattcctgtggggtcaatggaactgaatctaactcaaagacaagatacattaagtcatacggcaaagaatatttatcatcaaaattgatcaatgccacaagtgttgaaatataaaactttttgaattccaaataatgttctgctgcctcatcagtgttaaaataattggcaaattcttttgtcatgtccctccttctttacatacttgggaacttgcaacagatacaaacttccaacaaagtacatgttgcagttcaattggtaatatcaaatcagccttcataagtgggtatttttttccattgtaagtagaatattgtttttggtacaaagggatagctttgttgatagggttgatctaataactggagttgatgatgattcagtctgaggtatgctctgttgatgaagagtgtggtttttgactaaaaaatgctgctgtaccaagtattctcaaatgaattgtaaacaaagacagaatattttttaatactgtgcaaaatgccaaaatcattaaactcgacaaaacagcatgcacattaagtaagtacaaaacaattttttttaaacatatccatatatgcaccacataacccatagtattagagcataaaaaacaatgagggatcataaatgaaattgggtcaatagcaaggggagcactgctggatctagaggggacaatacatttccccttcactcactcagcttcaaacattataaaaatgaatcttcttttgttgtcattttaggatcccccccccccccccccaagttttccgtttatatacaaatacaattcattgcaaaaataggctttgttgaaccatcattctgagtctcatcttagtcttgctctaatatc
gi|4 : actcttccacgctccgccactggatggcaacgtcacacgcgtgtttacagactcgtcaacttgcatgtaaacaacatggcgcgcgatgtccgctcttgcaccgggtatcatgttaagtcgccttcgtttgaaccacgaaattttacagaaaagttgtccaaaggatctgacacccttctgagaaagttacgttcacaaaatttcactgagtaaaatcgcagaaacacaattgtaaaacgtgtgcaactagatgctttcgtagcatgaattgcattgttattacagtggcagaaatggtgtagaacaaattgtcccaatattttaacagagagctactgttctgaggctagtgcacagatgggtaaacacggtgcaattattgagtttaaattgttttgttaaggaatttaaaatggttgtttagttaaaaactgaataaaaaataggctatatttgcgcgttttaccgttcttttaatttttataaatgtttcatctgcttttaactaaaatcaccatcttccaaatgtgaaactatcaattgtttaagattttaaggacaagtatcccccttttccccccaggctaccctaatccaatatatttctataaatacacccgtccacacaaatccaacggatggggggggggggggggggggggggggggccgtaatgtacattatgatacataattcatttatttataaacacgtattaaaaatacagtagccaattaaagatagcattcctgtggggtcaatggaactgaatctaactcaaagacaagatacattaagtcatacggcaaagaatatttatcatcaaaattgatcaatgccacaagtgttgaaatataaaactttttgaattccaaataatgttctgctgcctcatcagtgttaaaataattggcaaattcttttgtcatgtccctccttctttacatacttgggaacttgcaacagatacaaacttccaacaaagtacatgttgcagttcaattggtaatatcaaatcagccttcataagtgggtatttttttccattgtaagtagaatattgtttttggtacaaagggatagctttgttgatagggttgatctaataactggagttgatgatgattcagtctgaggtatgctctgttgatgaagagtgtggtttttgactaaaaaatgctgctgtaccaagtattctcaaatgaattgtaaacaaagacagaatattttttaatactgtgcaGCATTTGAAAAA-AA-----TGA--GGGACTC-ATAAAT-GAAATT----GGA-TC-AATA-TCA-GGGATGCGGTGCTG--GATCTAG-AG------GGGACAATACATTTTCC--CCTCTCACTAACC-TCA---GCTTTCAA-CATTAGTAAA-AATCGAATCTTT-T-TC----TGTTTGT-CATTT--AGGCATCTTTCGACCCCCCCCCCCCCCCCCCCCCCCCC----CC-CCCC-CCC---CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCGT---TTCCCCC-CCCCATTTGT--ATACAATTCATCTGCAAAGAATAG--CTTT---GT--TTTGA-ACAT-CAAT--TTCTGAGT----TCTTCCAGTCTTGCT-TAATATC-TAAATTGATGA--AG-TATTTGTTA-CAA--AA--TAAATGA--ACA-TAAA-TAAAT--TCTAATTGTT-GAGTTTTTAAA-AAATCTT-TGAC---CAACATTTGT-ATCGTATGGCT--AACT--GCAAACTTTG-----CA-TTC-TTT-ACAA-T-CTTCT--GCAGTCAA---TT--GAAATTATAGTGC-A-T--GTGTTTGT--GCTC----GTGG-CA--GGTAA---A-TTGACCAAAAAGC-AGA----TCA--AA---G--AC--CCTGCAA--ATAG-TGTAA-TGTT-GT-A---CAAAG----TCTTTATAC-AGTAACTACA-AATT-GCCC-CT-AAC--TGACTTT-TACT---G-----AAC------------ATACTTTA---GATATAT--GC-------G--CATA----GCAAAAAA--ATGTAAAAGTCGATCTGATCCATAAT-TAATAT--CACCATAACTATGTTGTACATTAATGATTTGC-GTTAGTGCAACAGGCCTGATGCATCGCCATACACTAATAAG-ACAATTTCTAT-------CACATCCAGC-TC---TTGTACAAAATTCA-GTT-CATTGCAACAC---CCACTTTACTTTA-TTT-CCACAGACATCAG-----AAGT-ATCGTCAATTAGGA-GTTAAT-CGTA--TACGTTACGTACC----TAGAATCTTATACA-TATATAA-GTA-CCTCTCTCTCCTTCTTACCCCTCCCCC--TTTGTTTTTTT-TAAACCCAAAT---ACACTTTTTTGGGAA---TCCCGTTCATCTC-AAACTT-AC-G-CAGAAACTGGCCCCGCAAAGCGACTGAAATGAA--TGAATGGTGGGGAAATCTATGTCATTCG-TGTTCATCATTTTACGTTGCAATTTAGGTTGAAGGTGTGCG-----TGTTTGTGT-TGTGTGT-GTGGGGGGGGGGGGTGGTATGTGCATATAGGACGT-CT-A-TCTCA--GTCAAGAAACTTATGCATG-TACTATTATCT-AATTACACAGCTGT-CAC--AGTTAAA-TTACAT-TTCATCTTGATTTGATAAAAACAAACTATCACATTTGAA--ACGGTCATCGATCTCGTTTCT--CTCTCGTTGT--AGTA-TTGCAACTGCAA--ATGGGGCGCCTACAGCTAT--TACA-GCACAGC----AAACAATTA--TTTTCTGTGACTTTTTG-TTCCTGAAAA-TGGGGTATATCA-TC-ACTCCCTTTACTAGCCTTTCCTGGATA-CCGTTCG-TGTCA-TGTTACAGTTT-CCCCATGGC--GCAGCGTTTTCTCAACAATTTTCAAAGCGAATTCAAAGCATTTCAGTTTT-AAAACATCTGC-A--CT-AACACCTCCACCATGTTGCA-CCATCGGTG-TTTTGAACGG-AGGCGTCATGGGCCGGACAA-TTCTCCCGCGACTTC-TGACTTGCGTTGCG-GAAGATGGTA-ACCTCCTCACTCCCCTGACGAC-ATGGAGG
gi|5 : ATACAG--C---AATATATCTTTTAAAA---------ATA----G-CACATAT-TACCTAAAAC--TAACCC---GTGTT---------ATCTAAATGA---------GA--GGGGCT--ATAGAT-TAAATT----GGGGCC-AATAATCA-GTGATGCAGTGCTG---ATGTAA-AG------GGGACAATAAATCT-AGAACTTGTCACCAACC-TCA-AAGCTC---AACACTTATAAA-GAATGA-----TAT-TCA-AATGTT-GT-CATTT--ATG-ATCTT-CGACACC----------------CCTCC----CC-CCC------------AGTG--------------------TAGT---TTTTCCG-TTC----TAC--ATT---TTTAT-TGCAAA-AATAGGCTT-----GT--T---A-AC---CAATCATTCTGAAT----C--T-CAGTCT-GCTGTAATATC-TAAATT--TGA--AGCTATTTGTTA-CAAGAAA--TAA-TGA--ACA-TAGA-TACAT--T---ATTATT-GATC-TTTCTA-AAATCTT-TGAC---CAACA---GT-GTGAT-TGGCT--A-CT--G-AAACGATT-----CAGTTCTT-----AACT-CT--T--GCAGTC-A---TT------------------T--GTGTGTAT--GCT-T---GT-G-CA--GGTAA--TA-------GAATG---ATA----TC----------------CTGCAA--ATACATGTA-----T-GTGA---TAAAG----C-TT------AGT-ACCATA-A-TT-GACC--T-AAAGATGA-TTT-TAGT---GA---CAAAAATGTTTTAGATATGCGTTAAGTGAAAT-T--GTTTTTATAGATCATGAAGGGCAAAAAAATATATGAAGTCCGATCTGAT-CATAATCTTAAATTACACCAC-A--ATGT-GTATA-TAAT--TTT-CTGTTAATGCAATAAGTCTGAT---T-GC-GTTCACA-GTAAG-ACACATTGTATACACATGCACATCCAGCCTCAGATTGTACAAGATTTAGGTTGCATAAC-A-ACG--ACA-TT-ATTTTATATCACCA-AGGCACCAACCAGAAAGTGAT-GT-CAT-AGGA-GGT-AT-CGTAAATACGTT---TACTAGAGTAG-AT--TATAAAACACATAATGTAACC-----C-CCTCCCCAGCC--CTCCC--TTT-TTTTTC----AA-CCAAAT--CA-ATTTTTTT--GGACCATCTCGGTCATCTC-AAACTTTACAG-CAGAAACTGGCATGGCAAAGCGACGT-AATGAAGGTGAATGG-TGGTAA--TTGTTTCATT-T-T-TAAAATA-CTTACTTTTC-ATGTGGGT----GG-GTGCG------GTGTGT-------------CGGGAGGGTGGGTGGTAT-TGC--ATAAGACGTGCT-ATTCTCAAGATT-AGAA--CTAAGCAGGTTACTATTAAGTAAA-TAC-CA-CTGT-CAC--AG-TAAA-TTACA--ATCACATTGA-TTGAT-AAAACAAAC--TTACATTTGAATGACG---TGTGATCT-GTTT-TA-TTCTCATTGA--A-TA-TTGTAACTGC-AGCACGGGG---CCCCGGCAAT--GG-G-GCTCAGCAGT-AAGCAATTA--TTTTCTGTGA---TTTGCTT-CTG-CAATTGGGGTA-ATC-TTC-A--CCC--TA-TA-TCTTT-C-GGGTACCCGT--GTTGTCACTGCTA----TT-CCCCCT-GCTGGCAG-G---TCTT-ACAA--GTTCAAGCGAATCCACA--ATCTCG---TT-AAGACATCTGC-A-TCT-AACA--TCCACCATG-TGCA-CAATAGGTGTTTTTG--CGGAAG--GTCATGG--CGGACAA-TTTTCCCGCGATTt
gi|6 : ggttgatctacataactggagttatgatcgattcgtatgctctgttgatgacgagtgtgatctctttagctaaaaaattctgctgtaccaagtatatccaaatgaatcgtaaaaaaaaaaccgacaagaatatttttttaatatgtcaaatgccaaatcaA--AA--TAAATGA--ACA-TAGA-TAAAT--TCCA-TTGTTTGAG--TTTAAA-AATCTTT-TGAC---CAACATT-GT-AT-AT---GCT--A-CT--G-AAAACTTG-----CA-TTCTTTT-ACAA-TTCT--T--GCA-TC-A---TT--GA-----CAGT-----------TTTGT--GCTCTT--GT-G-CA--GGTAA--TA-TTT-C-AACAG---AGA----TCA--CA---A--AC--CCTGCAA---TA--TGTAATTGTT-GT-C---CAAAG----T-TTTATA--AGT-ACTACA------------T-AA---T---TTT-TAAT---GA-----AA------------ATACTTTA---GATAT----GC----------CATA----GCCAAAAA-TATGTAAAAGTCGATCTGAT-CATAAT-TTAAAT--CACCAT-ACTATGTTGTACA-ATATGATTT-C-TTTAATGCTACAGGCCTGATGCAT-GC--TACACT-AAAAGCCCACATTTTAT--------ACATCCAGC-TC----TGTACAAAATTCAGA-T-CATTAC-ACACG--ACA-TTTA-TTTATTTT-CCACAGACATCAG-----AAGT-AT-G--AA-TAGGA-GTT-AT-CGT---TACGACACGTAGC----TAG-ATCTTATACA--ATATAA-GTA-CC-CTCT---------------CCCCC--TTT-TTTTTTTAAAAA-CCAAATACAACATTTTTTG--GAA---TCCCCCGCATCTC-AAAC-T-ACAG-CAG-AACTGGCCCCGCAAAGCGACTT-AATGAAGGT-AATGT-GGGGAAA-CTAAGTC-TT-G---TTCATTA--TTACGTTTC-ATTTAGGTT--AAG-GTGCGTGTGTTGTGTGTGTGTGTGTGT-G-GGGGGGGGGGGGT--TATGTGC--ATAAGACGTGCT-ATTCTCA--GTC-AGAAACTTATGCA-G-TACTAATTTCT-AA-TACACA-CTGTCCACAAAGTTAAA-TTACACTATCAT-TTGA-TTGATAAAAACAAACG-TTACA-TTGAA--ACGT--GTCGATCT-GTTT-TTCCTCTCGCTTTAAA-TACTTGCAACTGC-A--ATGGGG---CTACAGCT------------CAGCACGTAAACAATTATTTTTTCTGTGAC-TTTTG-TT-CTG-AAA-TGGGGT---TAATTCAACTCCT--CCCTAGCCTTT-CTGGATA-CCGT--G-TGTAGCTGTTACA-TTTACCCCA--GC--GCAG-G-TTT-TC-CCAATTTTTCAAGCGAATTCAAAGCATTTCG--TTTAAAAACA-CTGCAA-TCTAAACACCTCCACCATG-TGCA-CCATCGGTG-TTTTG-ACGG-AG--GTCATGG--CGGAGAA-TTCTCCCGCGA-TTC-TGA-TTG-GCTGTGCGAAGATGGTA-A-CTCC-C-CTCCCCTGACGAC-GTGGGAAG
gi|7 : acATGCCACACAT-AGTGGCAA-TGGACACAAGT-GCATGCTCAACACTATAA--GTATTAGAT---GA-CTTAAATTT-TTTTTTAACATCTTGTCATGTAAT-AT-TATGTAC-CAC--AACCC-CTAACCCATTGTATTTA-GAAG-CACCTAACAAA-AA-----TGAAGGGGACTCGATAAATAGAAATTCGACGGG-TTTAATGATCA-GGGATGCATTTTCGTGGATCTATTAGACTTCTGGGACAATACATTC-CC--CAGTTCACTAACCCTCTTA-TCCTTCAA-CATTTATTAA-AAATGGATCTTCCT-TCA---T-TT-GT-CATTTTTAGG-ATTTT-TGACCCC----------------CCCCC----CCACCCCACCCCTGCCCCAAC---------------------C-GCCCATTCCCCC-CCC----TCC--CTCC----CAG-TG-----AATAG--TTTTCCCGTTCTTTGATATATATAATC-------------TCCT-CAA-ATTGC--AAAAATCTTAAATTAATGAACAG-TATTTGTTACCAA--AAACTAAA-GACCACATTAGATTAAGTGGTTTTATTGTT-GAG--TTTAAAGGAATC-T-TGACCATCAACATAGGTAATTCC-TTTCTTCAACTTGA-AAACTTTGTCGATTA-CTCTCTTAATAAGT-CA--TCCGCAGTC-AATGTTTAGAAC-TAT-GTGCAA-TAGATGTATGCTAGCTCCTGGGT-GTCAGGGGTAAATCACTTT-TCAAAAACGCAGATTCCTCATTAATTTACCACAACCTGCAATGATA--TGTACTTGTTGGT-AACTCCAAGCTTTT-TTTATAGGAGT-ACAACACAATTAGCCCACT-AAAC-AGA-TTTCTA-TCCGGAAACCAAA------------ATACTTTA---GTTAT-TTAG--------G--TATA----GTAAAcgtg
16 sequences could not be aligned to this reference sequence:
Unaligned ( gi|8 ): ATCGTTAATCGCTCGTATTTTTACCTGCGGATATATTTCACAGACAATCAGTTTGTCAAAAGACTCTAGACCCAACTTGCTCGCCAGAAAAGTTACTGTCTAGTTCAACAAATTTCACTCGCTAGTAAACGCAGAAGTAGCAACGAAATTGTGAAACCTTGCGTGCACTAGATGCTTTCGTTAGCATGATGTTACATTGGCATGTTATTTGTGCAGAAATGTTGTAGAACAAATTGTCCAATATTCATTCAGAGCAGCAACAATTCTTGCAGCTAGTGCCCAGATGCGATACCAACATTGTATTTCATTTTGTTATTTGGGATTTTA
Unaligned ( gi|9 ): CTCTTCTCACCGCTCCGCCTACTGATGGCAACGTCACATTCGCGTGTTACAGATCCTCAAGCTTGCATTAAACAACATGGCGGCGATGTCGATCTTGCACGGGTATCATGTAATCGCCTCGTTTGGCACGAATTCTTCACAGAAAGTTTGTCAAATAGGATCTGCACATTACTTCATGAGAAAGTTACCGTTTCAAAAAGTGTTCTACTGAGAAAAAGAACGCATGAAACAGCAATTGTAATCAACTGGCCACTGGGATGCTTTCCGTAGCCTGAATGCCATGTTATTACCAGTGTGCATGAAATGG
Unaligned ( gi|10 ): TTTTTAACAGCAAAGTTTGTCAAAGGATCTGACACGTTCAGAGAAAGTTGCGTTCACAAAATATTTCAATGAGTGAAAAACGCAGAAAACAGTTTAAACGTGTGCACTAGGATGCTTTCGTAGCAATGATTATATTATTGTGTGCAACGAGATGGCTGGCAGAACAATATTGTCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTCACAGAAATGGGTAAACTACGGACACCAATTTCGAGTTTATTGTTT
Unaligned ( gi|11 ): CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCGCCCCCCCCCCCCCCCCCCCCCCCCCCCCCACCCCCCCCCCCCCCCCCCCCCCCCCCCCAATGAAAATATGTATTAAAAGTTATGAAATTCATTCTTATCACAGTTTATTTCTAAAATAGTGAATTTCAGAACAAAAAGTCTGCACTAAATGAACAATATTATATAAATTTTGATAAATTTATAACTCTAGCATTGAAACTATTTGTAACA
Unaligned ( gi|12 ): TCACTCTTCCACGCTCCGCCCACTGATGGCAACGTCACACACGTGTTTACAGACTCCGTCAACTTACATGTAAACAACATGGCGAGCGATGTCGATCTTGCACCGGGTATATTGTTAATCGTCCCGTTTGACAACGAATTTTCACAGAAAAGTTTGTCAAATGATCTGACATACTTCAGAGAAAGTTACTTACGTTCACAAAATTTCACTGACTAAAA
Unaligned ( gi|13 ): CCCCACCCCCCCCCCCCCCCCCCCCCCCCCCCCCTCCCCCCCCCCCCCCCCCCCCCCCCCCCCTTTTCACCTACATATTTATAGTACATGTATTGATAACATGAAAGGTATATTATTGCAATTGATATCACAATATTTACGTATTCTAATAACAACCTTGACCTTATTGACTTAGAAATTGATGCGTAGCATCATATCT
Unaligned ( gi|14 ): CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCACGCCCCCCCCCCCCCTTTAATTTGTGCCAACTTCTTAAAAGTATACTTTTATCATACTTGCATATCATTTTTTATTTTAACATTTCAATATAAATTCATCAATCTTTATTTCATAATTAAT
Unaligned ( gi|16 ): CCCCCGCCACCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCTTAAGTATTTCACAATACACATTCACACCGAATAAATATATCTGTATTGACAAAGTTCGTTGATATCACGGAGAAATAT
Unaligned ( gi|17 ): ACTCTTTCCACGCTCCGCCCACTGATGGCAACGTCAGCACGCGTGTTTACAGACTCCGTCAACTTTACACTGTAAAACAACATGGCGATCATGTCGAATCTTGCACGGGTCATC
Unaligned ( gi|18 ): ACTCTTCCACGCTCCGCCCACTGATGGCAACGTCACTCACGTGTTTACAGACTTCGTCAGCTTACATGTAATTAACATGGCGAACGATGTCAATCGTGCATCGGGTACC
Unaligned ( gi|19 ): TTGGTATAAGTTTTTTCTATTGTAAATAGATATATTGTTTTTGCTGGTAAAAGGAATATCTTGTTGATAGGTTGGATCTATTATAAACTGG
Unaligned ( gi|20 ): GATTTAAAAATGTTTAGTTAAAAAATCCTGAATAAAATAGGTATATATTTGCTGCGTTACCGTTCCACTTATAAATGTTTCATTGCTTTC
Unaligned ( gi|21 ): CCCCCCCCCCCCCCCCCCCCCCTCAGCTAAATTCACCCAGATCTGTGGTTATAATTGGTAAGAAAAGTTTAGTGGATATCTCAATA
Unaligned ( gi|22 ): CCCCCCCCCCCCCCCCCCCTTTTTACCCTCAGCGGGATATTTTTTTATTGACATTGTATTAGATAAATTTTGGAAGGTAT
Unaligned ( gi|24 ): CACTCTTCCACGCTCCGCCCACTGGAGGCAACGTCACACACGATGTTTACAGACTCCGTACAACTTACATG
Unaligned ( gi|25 ): ATTCACTCTTCCACGCTCCGCCCACTCCGTCAACTTACATGTAAACAACATGG
Alignments
lowQualScore : 1 111 1 1 33333333 11 11 222222 222 555555555555555555 11 22 111 55555555 22222222 11 1111 1 111 111111 22222 333 1 1 2222 11 11 3333333333333333 999999999999999999999999999999 22222 1111 1 1 111111111111111 222 11 222222222 2 1 11 1 1 11 11 11 11 11 111 111 11111 1111 1111 22222 1 11111 111 555555555555555555555 11 111111 11 22222222222 222 1111 333333333333333 111 11 11 222222 111111 11 222 44444444444444444444444444 111 5555555555555555 1111 1 11 1 1 1 1 1 11 1 1 33333333 1 2222 1 1 111 1 1 1 22222 1 1 11 1 1 1 111 2222 1 11 1 1 1 111 11 11 1 111 1 222 11 111 1 1 1 1 1 11 22222 11 1 111 1 222222 111 11 1 11 1 1 1 1 1 1 11 1 333 2 1 22 11 2222 1 2222 1111 1 1111 111 333333333 3333 22 11 1 1 1 1 11 1 11 1 1 11 1 1 2 11 11 1 11 1 111 1 1111 1 1 1 1 1 1 11 11 1 1 1
lowQualScore : 3 6 999 3 3 7 99999999 88 88 0 0 222222 777 0 777777777777777777 4 8 66 0 33 777 88888888 66 99999999 99 33 6 4444 3 6 1 6 0 0 555 6 999999 44444 1 6 555 5 7 2 5 5 8888888 5 7777 5 5 44 2 00 0 5 3333333333333333 888 5 77 888 222222222222222222222222222222 4 5 33333 77 3333 3 3 666666666666666 6 555 33 222222222 6 6 0 33 0 0 11 11 11 11 8 8 11 3333 8 99 8 0 8 444 222 8 00000 2222 2222 00000 8 0 0 8 6 8 33333 8 444 666666666666666666666 1 11 666666 8 11 22222222222 555 7777 333333333333333 111 99 11 8 111111 444444 55 6 999 6 99 6 777 6 6 99999999999999999999999999 111 1111111111111111 4444 88 8 0 44 33 0 2 3 0 2 0 0 3 2 0 99 0 0 1 0 55555555 0 0000 333 0 0 2 666 0 3 0 3 0 2 55555 0 0 33 66 0 0 0 777 3 1111 0 2 77 0 0 5 222 1111 2 33 33 0 666 0 333 2 33 777 0 0 3 0 3 0 3 3 3 0 2 2 0 22 3 99999 77 0 555 0 888888 2 8 666 2 2 33 2 2 0 3 33 0 3 9 0 0 0 3 0 0 33 3 0 000 0 0 9 33 3 33 8888 0 4444 4444 0 4444 777 999999999 3 4444 55 22 0 0 0 0 33 66 0 2 33 2 2 0 3 0 33 0 2 2 0 0 22 33 0 33 2 0 3 2 777 0 3 4444 0 2 0 0 0 5 0 33 33 0 7 3 2 0 8 6 6 888 8
lowQualScore : . . ... . . . ........ .. .. . . ...... ... . .................. . . .. . .. ... ........ .. ........ .. .. . .... . . . . . . ... . ...... ..... . . ... . . . . . ....... . .... . . .. . .. . . ................ ... . .. ... .............................. . . ..... .. .... . . ............... . ... .. ......... . . . .. . . .. .. .. .. . . .. .... . .. . . . ... ... . ..... .... .... ..... . . . . . . ..... . ... ..................... . .. ...... . .. ........... ... .... ............... ... .. .. . ...... ...... .. . ... . .. . ... . . .......................... ... ................ .... .. . . .. .. . . . . . . . . . . .. . . . . ........ . .... ... . . . ... . . . . . . ..... . . .. .. . . . ... . .... . . .. . . . ... .... . .. .. . ... . ... . .. ... . . . . . . . . . . . . . .. . ..... .. . ... . ...... . . ... . . .. . . . . .. . . . . . . . . . .. . . ... . . . .. . .. .... . .... .... . .... ... ......... . .... .. .. . . . . .. .. . . .. . . . . . .. . . . . . .. .. . .. . . . . ... . . .... . . . . . . . .. .. . . . . . . . . ... .
lowQualScore : 3 7 333 3 3 3 00000000 33 33 8 8 666666 000 6 444444444444444444 6 0 00 6 44 000 99999999 88 77777777 22 33 7 2222 3 7 7 7 7 7 888 7 222222 33333 5 7 555 5 3 0 7 1 4444444 7 4444 7 7 44 5 11 1 0 1111111111111111 888 0 55 888 777777777777777777777777777777 0 7 99999 99 6666 3 3 333333333333333 7 222 88 777777777 7 7 8 88 0 0 00 00 66 00 0 0 00 8888 0 00 0 8 0 000 222 0 22222 6666 2222 00000 0 8 8 0 0 0 00000 0 000 222222222222222222222 0 00 000000 0 00 22222222222 000 0000 888888888888888 888 00 22 0 000000 333333 88 7 000 7 22 7 555 7 7 77777777777777777777777777 777 7777777777777777 2222 88 0 0 22 88 0 5 2 0 5 0 0 2 5 0 22 0 0 0 8 00000000 0 8888 888 0 0 5 222 0 2 8 2 0 5 00000 0 0 22 55 0 0 0 000 2 2222 0 5 00 0 0 5 888 5555 5 88 88 0 888 0 000 5 88 555 8 0 2 0 2 0 2 2 2 0 5 5 0 55 2 55555 00 0 000 0 222222 5 8 222 5 5 88 5 5 0 2 88 0 2 2 0 0 0 2 0 0 88 2 0 000 0 0 8 88 2 88 8888 0 8888 8888 0 8888 555 555555555 5 5555 55 55 0 0 0 0 22 55 0 5 88 5 5 0 2 0 88 0 5 5 0 0 00 88 0 22 5 0 2 5 000 0 2 2222 0 5 0 0 0 5 0 88 88 0 0 3 0 8 0 7 7 333 0
consensus : AAATGCCAAA-ATCAGTN--AA-TGGACA-AAGCAGCACGC-----ACTTTAA--GTA--AGATACAGA-C---AATATATTTTTTAAAA---------ATAATCAG-CACGTAT-CACCTAAAAC-ATAACCCATTGTATTTAAGAAGGCATCTAAAAAA-AA-----TGA--GGGACTC-ATAAAT-GAAATT----GGG-TC-AATAATCA-GGGATGCGGTGCCG--GATCTAG-AG------GGGACAATACATTT-CC--CCTTTCACTAACC-TCA-A-GCTTTCAAACACTTATAAA-AAATGAATCTTTNT-TCA-AATGTT-GT-CATTTT-AGG-ATCTT-CGACCCC----------------CCCCC---CC-CCCC-CCC---CCCCAGC---------------------CAGT---TTCTCCG-TTC----TAC--ATNCAATTCAT-TGCAAA-AATAGGCTTTT---GT--TTTGA-ACAT-CAATCATTCTGAGT----TCTT-CAGTCTTGCT-TAATATC-TAAATTNATGA--AG-TATTTGTTA-CAA--AA--TAAATGA--ACA-TAGA-TAAAT--TCTAATTGTT-GAG--TTTAAA-AAATCTT-TGAC---CAACATTTGT-ATTAT-TGGCT--AACT--G-AAACTTTG-----CA-TTCTTTT-ACAA-T-CT--T--GCAGTC-A---TT--GAA--TATAGTGC-A-T--GTGTTTGT--GCTC-T--GTG-CA--GGTAA--TA-TTT-CCAAAAG---AGA----TCA--AA---A--AC--CCTGCAA--ATA--TGTAATTGTT-GT-A---CAAAG----T-TTTATA--AGT-ACTACA-AATT-GCCC-CT-AA---TGA-TTT-TA-T---GA---CAAA------------ATACTTTA---GATAT-T--GC-------G--CATA----GCAAAAAA-TATGTAAAAGTCGATCTGAT-CATAAT-TTANAT--CACCAT-ACTATGTTGTACA-TAATGATTT-C-GTTAATGCAACAGGCCTGATGCAT-GCCGTACACT-ATAAG-ACANATTTTAT-------CACATCCAGC-TC---TTGTACAAAATTCAGGTT-CATTGC-ACACG--ACA-TTTANTTTATTTT-CCACAGACATCAG-----AAGT-AT-GT-AATTAGGA-GTT-AT-CGTA--TACGTTACGTACC----TAG-ATCTTATACA-TATATAA-GTA-CCTCTCTC-CCTCCCTACCC--CCCCC--TTT-TTTTTTT-TAAA-CCAAAT--AACACTTTTTT--GAA---TCCCGTTCATCTC-AAACTT-ACAG-CAGAAACTGGCCCCGCAAAGCGACTT-AATGAAGGTGAATGG-GGGGAAATCTATGTCATT-G-T-TTCATCA-TTTACGTTTC-ATTTAGGTTGAAGG-GTGCG-----TGTGTGTGTGTGTGTGT-G-GGGGGGGGGGGGTGGTATGTGC--ATAAGACGTGCT-ATTCTCA--GTC-AGAAACTTATGCATG-TACTATTATCT-AA-TACACA-CTGT-CAC--AGTTAAA-TTACAC-NTCAT-TTGA-TTGATAAAAACAAAC--TTACATTTGAA--ACG---ATCGATCT-GTTT-T--CTCTCGTTGT--A-TA-TTGCAACTGC-A--ATGGGG---CTACAGCTAT--NA-G-GCACAGCA---AAACAATTA-TTTTTCTGTGAC-TTTTG-TT-CTG-AAA-TGGGGTA-ATCATTC-ACTCCC--TACTAGCCTTT-CTGGATA-CCGT--G-TGTCACTGTTACA-TTT-CCCCATGGC--GCAG-G-TTTCTC-ACAATTTTTCAAGCGAATTCAAAGCATTTCG--TTT-AAAACATCTGC-A-TCT-AACACCTCCACCATG-TGCA-CCATCGGTG-TTTTGAACGG-AG--GTCATGG--CGGACAA-TTCTCCCGCGATTTC-TGACTTG-GCTGTGCGAAGATGGTA-A-CTCCAC-CTCCCCTGACGAC-GTGGAAGG
Reference ( family-1037 ) : AAATGCCAAA-ATCAGTN--AA-TGGACA-AAGCAGCACGC-----ACTTTAA--GTA--AGATACAGA-C---AATATATTTTTTAAAA---------ATAATCAG-CACGTAT-CACCTAAAAC-ATAACCCATTGTATTTAAGAAGGCATCTAAAAAA-AA-----TGA--GGGACTC-ATAAAT-GAAATT----GGG-TC-AATAATCA-GGGATGCGGTGCCG--GATCTAG-AG------GGGACAATACATTT-CC--CCTTTCACTAACC-TCA-A-GCTTTCAAACACTTATAAA-AAATGAATCTTTNT-TCA-AATGTT-GT-CATTTT-AGG-ATCTT-CGACCCC----------------CCCCC---CC-CCCC-CCC---CCCCAGC---------------------CAGT---TTCTCCG-TTC----TAC--ATNCAATTCAT-TGCAAA-AATAGGCTTTT---GT--TTTGA-ACAT-CAATCATTCTGAGT----TCTT-CAGTCTTGCT-TAATATC-TAAATTNATGA--AG-TATTTGTTA-CAA--AA--TAAATGA--ACA-TAGA-TAAAT--TCTAATTGTT-GAG--TTTAAA-AAATCTT-TGAC---CAACATTTGT-ATTAT-TGGCT--AACT--G-AAACTTTG-----CA-TTCTTTT-ACAA-T-CT--T--GCAGTC-A---TT--GAA--TATAGTGC-A-T--GTGTTTGT--GCTCTT--GTG-CA--GGTAA--TA-TTT-CCAAAAG---AGA----TCA--AA---A--AC--CCTGCAA--ATA--TGTAATTGTT-GT-A---CAAAG----T-TTTATA--AGT-ACTACA-AATT-GCCC-CT-AA---TGA-TTT-TA-T---GA---CAAA------------ATACTTTA---GATAT-T--GC-------G--CATA----GCAAAAAA-TATGTAAAAGTCGATCTGAT-CATAAT-TTANAT--CACCAT-ACTATGTTGTACA-TAATGATTT-C-GTTAATGCAACAGGCCTGATGCAT-GCCGTACACT-ATAAG-ACANATTTTAT-------CACATCCAGC-TC---TTGTACAAAATTCAGGTT-CATTGC-ACACG--ACA-TTTANTTTATTTT-CCACAGACATCAG-----AAGT-AT-GT-AATTAGGA-GTT-AT-CGTA--TACGTTACGTACC----TAG-ATCTTATACA-TATATAA-GTA-CCTCTCTC-CCTCCCTACCC--CCCCC--TTT-TTTTTTT-TAAA-CCAAAT--AACACTTTTTT--GAA---TCCCGTTCATCTC-AAACTT-ACAG-CAGAAACTGGCCCCGCAAAGCGACTT-AATGAAGGTGAATGG-GGGGAAATCTATGTCATT-G-T-TTCATCA-TTTACGTTTC-ATTTAGGTTGAAGG-GTGCG-----TGTGTGTGTGTGTGTGT-G-GGGGGGGGGGGGTGGTATGTGC--ATAAGACGTGCT-ATTCTCA--GTC-AGAAACTTATGCATG-TACTATTATCT-AA-TACACA-CTGT-CAC--AGTTAAA-TTACAC-NTCAT-TTGA-TTGATAAAAACAAAC--TTACATTTGAA--ACG---ATCGATCT-GTTT-T--CTCTCGTTGT--A-TA-TTGCAACTGC-A--ATGGGG---CTACAGCTAT--NA-G-GCACAGCA---AAACAATTA-TTTTTCTGTGAC-TTTTG-TT-CTG-AAA-TGGGGTA-ATCATTC-ACTCCC--TACTAGCCTTT-CTGGATA-CCGT--G-TGTCACTGTTACA-TTT-CCCCATGGC--GCAG-G-TTTCTC-ACAATTTTTCAAGCGAATTCAAAGCATTTCG--TTT-AAAACATCTGC-A-TCT-AACACCTCCACCATG-TGCA-CCATCGGTG-TTTTGAACGG-AG--GTCATGG--CGGACAA-TTCTCCCGCGATTTC-TGACTTG-GCTGTGCGAAGATGGTA-A-CTCCAC-CTCCCCTGACGAC-GTGGAAGG
gi|1 : ATACAG--C---AATATATCTTTTAAAA---------ATA----G-CACATAT-TACCTAAAAC--TAACCC---GTGTT---------ATCTAAATGA---------GA--GGGGCT--ATAGAT-TAAATT----GGGGCC-AATAATCA-GTGATGCAGTGCTG---ATGTAA-AG------GGGACAATAAATCT-AGAACTTGTCACCAACC-TCA-AAGCTC---AACACTTATAAA-GAATGA-----TAT-TCA-AATGTT-GT-CATTT--ATG-ATCTT-CGACACC----------------CCTCC---CC-CCC------------AGTG--------------------TAGT---TTTTCCG-TTC----TAC--ATT---TTTAT-TGCAAA-AATAGGC--TT---GT--T---A-AC---CAATCATTCTGAAT------CT-CAGTC-TGCTGTAATATC-TAAAT
gi|15 : actcttccacgctccgccctgatggcataacagtcatcacgtgttacaagactccgtcaacttacatgtaaacaacatgggtgcatgtcatgcttgcaccgtacatattgtaaatcgcctcgttttgacgacgaattgttcacagaaaagttgtcaaggatctgacacagcttgcagagaaagttacgttcactaaaatttatgagtcaataacgcagaacagcacttgtaaacgggtgctactcatagtctcgatgctttcgtaacatggatgcatgtattatgtgtacagatatggctgcagaaaaactgtcccgatatttttacagagagctacatgctgcagctagctgcatcagatggtaaactacgggaaattaaacgagtttaattttttgtgaggaatttaaaaatgttgttttagttaaaaaacttaataaaatagccctaaaacgtctgcgtttacccgttcccattttataagatgttttcatctgctgtctgcatatttatattgtatttttcagcctaactaatagccacttccacaaatattgaactacattgggatatattaaaaattggttgcttaaagatttatatagtggcattgcatatgtatcccccttttttccaggtctatctccctaatccaatatatatgctaataaaatacacggacggttcgggtggtaacacccgtcacaggcaatcacagaagggaaaaaaactcgtaacgtaattaattatagtaatagttcatttatttgtaaatgccatattgaacacagtaaacttatattttcagccagtttaaagataacatccatgggtcagcaatggaatggaacacacaaacaacatacaagtcaataaggcagataatctttatatcaaagttgatcaatgcatagtgcgattgaaattaaaattcttgtattccaaataattgtattgccctgatcatgttgagaataatgcaattcttttgtcatgtcctccttcttttacgtacttgggaaacttgcacaatcaaatctccaagcaaagtacatgtttgcaaggttaattgtaaaatatatcaaaacacgccttggtattcttttctattgtaaagagaattgttttctgctaaaaaggggaagcttgtgatactgggttgatctacataactggagttatgatcgattcgtatgctctgttgatgacgagtgtgatctctttagctaaaaaattctgctgtaccaagtatatccaaatgaatcgtaaaaaaaaaaccgacaagaatatttttttaatatgtcaaatgccaaatcaT-AGG----TC-CAACCCC----------------CCCCC---CC-CCCC-CCC---CCCCCTC------------------------T---CTCTCTG-TT-----TAT--ATGCGATTC
gi|2 : catgtttttcataataaactcAAATGCCAAA-ATCAGTT--AA-TGGACA-AAGCAGCAC-------ATTTTAACAGTA--AGATACAAA-C---AAC---TTTTTTTACA---------ATAATCAGTCATTTAT-CAGC--AAACTATAACC-ATTGTATTTAAGAAGGCA-ATAAAAAA-AAACCAATGA--GGGACTC-ATAAAT-GAAATT----GGA-TC-AATTATCAAGGGATGCGGTGGCG--GATCTAG-AG------GG-ACAATACATTT-TC--CCCTTCACTA-CC-TCA---GCTTTCAAACA-TTATAAA-A--TGAATCTTTCT-TCT---TGTT-GTTCATTTT-AGGCATCTT-CGACCCC----------------CCCCCCCC----CCC-CCC---CCCCA------------------------AGT---TT-TCCGTTTT----TAT--ATACAATTCATCTGCAAAGAATAGGCTTTT---GT--TTTGA-ACAT-CAAT--TTCTGAGT----TCTTCCAGTCTTGCTCTAATATC-TAAATTTATGA--AG-TATTTGTTA-CAA--AA--TAAATGA--ACA-TAAA-TAAAT--TCTAATTGTT-GAG--TTTAAA-AAATCTTCTGAC---CAACATTTGT-ACTAT-TGGCT--AACT--G-AAACTTTG-----CA-TTCTTTT-ACAA-T-CT--T--GCAGTC-A---TT--GAA--TATAGTGC-ATT--GTGTTTGT--GCTC-T--G-G-CA--GGTAA--TA-TTT-CCAAAAG---AGA----TCA--AA---A--AC--CCTGCAA--ATA--TGTAATTGTT-GT-A----AAAG----T-TTTATA--AGT-ACTACA-AATT-GCCC-CT-AA---TGA-TTT-TA-T---GA---CATA------------ATACTTTA---GATAC-T--GC-------G--CATA----GCAAAAAA-TATGTAAAAGTCGATCTGAT-CATAAT-TT-TAT--CACCAT-ACTATGTTGTACA-TAATGATTT-C-GTT-ATGCATCAGGCCTGATGCAT-GCCATACACT-ATAAG-ACAAATTTTAT-------CACATCCAGC-TC---TTGTACAAAATTCAGATT-CATTGC-ACACGCCACA-TTTAGTTTATTTT-CCACAGACATCAG-----AAGT-AT-GT-AATTAGGAGGTT-ATCCGTA--TACGTTACGTACC----TAG-ATCTTATACA-TATATAA-GTA-CCTCTCTC-TCTCTCTACCC--CCCCCCTTTT-TTTTTTT-TAAA-CCAAAT--AACACTTTTTT--GAA---TCCCGTTCATCTCAAAACTT-ACAGCCAGAAAC-GGCCCCGC-AAGCGACTT-AATGAAGGTGAATGG-GGGGAAATCTATGTCATT-GTT-TTCATCA-TTTACGTTTC-ATTTAGGTTGAAGG-GTGCG-----TGTGTGTGTGTGTGTGTGG-GGGGGGGGGGGGTGGTATGTGC--ATAAGAC--GCTCATTCTCA--GTC-AGAAACTTATGCATG-TACTATTATCT-AA-TACACA-CTGT-CAC--AGTTAAATTTACA--TTCAT-TTGA-TTGAATAAAACAAAC--TTACATTTGAA--ACG---ATCGATCT-GTTT-T--CTCTCGTTGT--A-TA-TTGCAACTGC-A--ATGGGG---CTACAGCTATTACA-GCGCACAGCA---AAACAATTA-TTTTTCTGTGAC-TTTTG-TT-CTG-AAA-TGGGGTA-ATCATTC-ACTCCC--TACTAGCCTTT-CTGGATA-CCGT--G-TGTCACTGTTACA-TTTCCCCCATGGC--GCAG-G-TTTCTC-ACAATTTTTCAAGCGAATTCAAAGCATTTCG--TTT-AAAACATCTGC-ACTCT-AACACCTCCACCATG-TGCAGCCATCGGTG-TTTTGAACGG-AG--GTCATGG--CGGACAACTTCTCCCGCGATTTCGTGATT---GCGTTGCGGAGATGGTACA-CTCCCA-CTCCCCTGACGACTATGGAAGGtcggtaatagtgtacagttctattatgaacattagagaacattttcaaaatcaaatattaa
gi|23 : AAAG----T-TTTATA--AGT-ACTAAA-AATT-GCCC-CTAAA---CGA-TTT-TA-T---GA---AAAA------------ATACTTTA---GAT---------------------------------A-TATGTAAAAGTCGATCT-AT-Ct
gi|26 : TTG-GCTGTGCGAAGATGGTA-A-CTCCAC-CTTCCCTGACGAC-GTGGAAG
gi|27 : aTA-A-CTCCAC-CTCCCCTGACGAC-GTGGAAGcat
gi|28 : TTG-GCTGTGCGAAGATGGTA-A-CTCCAC-CTctg
gi|3 : TTATAAATAAATGAAT-TATGTATCATAATGT------ACATT-A---------CGGCCCC----------------CCCCC---CC-CCCC-CCC---CCCCt
gi|3 : actcttccacgctccgccactggatggcaacgtcacacgcgtgtttacagactcgtcaacttgcatgtaaacaacatggcgcgcgatgtccgctcttgcaccgggtatcatgttaagtcgccttcgtttgaaccacgaaattttacagaaaagttgtccaaaggatctgacacccttctgagaaagttacgttcacaaaatttcactgagtaaaatcgcagaaacacaattgtaaaacgtgtgcaactagatgctttcgtagcatgaattgcattgttattacagtggcagaaatggtgtagaacaaattgtcccaatattttaacagagagctactgttctgaggctagtgcacagatgggtaaacacggtgcaattattgagtttaaattgttttgttaaggaatttaaaatggttgtttagttaaaaactgaataaaaaataggctatatttgcgcgttttaccgttcttttaatttttataaatgtttcatctgcttttaactaaaatcaccatcttccaaatgtgaaactatcaattgtttaagattttaaggacaagtatcccccttttccccccaggctaccctaatccaatatatttctataaatacacccgtccacacaaatccaacggatggggggAAATGCCAAA-ATCATTA--AACTCGACA-AAACAGCATGC-----ACATTAA--GTA--AG-TACAAAAC---AAT-T-TTTTTTAAAC---------ATA-TC---CATATATGCACC----AC-ATAACCCATAGTATT--AGA--GCAT--AAAAAACAA-----TGA--GGGA-TC-ATAAAT-GAAATT----GGG-TC-AATAGCAA-GGGGAGCACTGCTG--GATCTAG-AG------GGGACAATACATTT-CC--CCTT-CACTCAC--TCA---GCTT-CAAACA-TTATAAA-AA-TGAATCTTCTT-T-----TGTT-GT-CATTTT-AGG-ATC---------------------------CCCC---CC-CCCC-CCC---CCCAAG-----------------------------TTTTCCG-TTTATA-TACAAATACAATTCAT-TGCAAA-AATAGGC-TTT---G----TTGA-AC---C-ATCATTCTGAGTCTCATCTT--AGTCTTGCTCTAATATC-acacgtattaaaaatacagtagccaattaaagatagcattcctgtggggtcaatggaactgaatctaactcaaagacaagatacattaagtcatacggcaaagaatatttatcatcaaaattgatcaatgccacaagtgttgaaatataaaactttttgaattccaaataatgttctgctgcctcatcagtgttaaaataattggcaaattcttttgtcatgtccctccttctttacatacttgggaacttgcaacagatacaaacttccaacaaagtacatgttgcagttcaattggtaatatcaaatcagccttcataagtgggtatttttttccattgtaagtagaatattgtttttggtacaaagggatagctttgttgatagggttgatctaataactggagttgatgatgattcagtctgaggtatgctctgttgatgaagagtgtggtttttgactaaaaaatgctgctgtaccaagtattctcaaatgaattgtaaacaaagacagaatattttttaatactgtgcaaaatgccaaaatcattaaactcgacaaaacagcatgcacattaagtaagtacaaaacaattttttttaaacatatccatatatgcaccacataacccatagtattagagcataaaaaacaatgagggatcataaatgaaattgggtcaatagcaaggggagcactgctggatctagaggggacaatacatttccccttcactcactcagcttcaaacattataaaaatgaatcttcttttgttgtcattttaggatcccccccccccccccccaagttttccgtttatatacaaatacaattcattgcaaaaataggctttgttgaaccatcattctgagtctcatcttagtcttgctctaatatc
gi|4 : actcttccacgctccgccactggatggcaacgtcacacgcgtgtttacagactcgtcaacttgcatgtaaacaacatggcgcgcgatgtccgctcttgcaccgggtatcatgttaagtcgccttcgtttgaaccacgaaattttacagaaaagttgtccaaaggatctgacacccttctgagaaagttacgttcacaaaatttcactgagtaaaatcgcagaaacacaattgtaaaacgtgtgcaactagatgctttcgtagcatgaattgcattgttattacagtggcagaaatggtgtagaacaaattgtcccaatattttaacagagagctactgttctgaggctagtgcacagatgggtaaacacggtgcaattattgagtttaaattgttttgttaaggaatttaaaatggttgtttagttaaaaactgaataaaaaataggctatatttgcgcgttttaccgttcttttaatttttataaatgtttcatctgcttttaactaaaatcaccatcttccaaatgtgaaactatcaattgtttaagattttaaggacaagtatcccccttttccccccaggctaccctaatccaatatatttctataaatacacccgtccacacaaatccaacggatggggggggggggggggggggggggggggccgtaatgtacattatgatacataattcatttatttataaacacgtattaaaaatacagtagccaattaaagatagcattcctgtggggtcaatggaactgaatctaactcaaagacaagatacattaagtcatacggcaaagaatatttatcatcaaaattgatcaatgccacaagtgttgaaatataaaactttttgaattccaaataatgttctgctgcctcatcagtgttaaaataattggcaaattcttttgtcatgtccctccttctttacatacttgggaacttgcaacagatacaaacttccaacaaagtacatgttgcagttcaattggtaatatcaaatcagccttcataagtgggtatttttttccattgtaagtagaatattgtttttggtacaaagggatagctttgttgatagggttgatctaataactggagttgatgatgattcagtctgaggtatgctctgttgatgaagagtgtggtttttgactaaaaaatgctgctgtaccaagtattctcaaatgaattgtaaacaaagacagaatattttttaatactgtgcaGCATTTGAAAAA-AA-----TGA--GGGACTC-ATAAAT-GAAATT----GGA-TC-AATA-TCA-GGGATGCGGTGCTG--GATCTAG-AG------GGGACAATACATTTTCC--CCTCTCACTAACC-TCA---GCTTTCAA-CATTAGTAAA-AATCGAATCTTT-T-TC----TGTTTGT-CATTT--AGGCATCTTTCGACCCCCCCCCCCCCCCCCCCCCCCCC---CC-CCCC-CCC---CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCGT---TTCCCCC-CCCCATTTGT--ATACAATTCATCTGCAAAGAATAG--CTTT---GT--TTTGA-ACAT-CAAT--TTCTGAGT----TCTTCCAGTCTTGCT-TAATATC-TAAATTGATGA--AG-TATTTGTTA-CAA--AA--TAAATGA--ACA-TAAA-TAAAT--TCTAATTGTT-GAGTTTTTAAA-AAATCTT-TGAC---CAACATTTGT-ATCGTATGGCT--AACT--GCAAACTTTG-----CA-TTC-TTT-ACAA-T-CTTCT--GCAGTCAA---TT--GAAATTATAGTGC-A-T--GTGTTTGT--GCTCGT--G-G-CA--GGTAA---A-TTGACCAAAAAGC-AGA----TCA--AA---G--AC--CCTGCAA--ATAG-TGTAA-TGTT-GT-A---CAAAG----TCTTTATAC-AGTAACTACA-AATT-GCCC-CT-AAC--TGACTTT-TACT---G-----AAC------------ATACTTTA---GATATAT--GC-------G--CATA----GCAAAAAA--ATGTAAAAGTCGATCTGATCCATAAT-TAATAT--CACCATAACTATGTTGTACATTAATGATTTGC-GTTAGTGCAACAGGCCTGATGCATCGCCATACACTAATAAG-ACAATTTCTAT-------CACATCCAGC-TC---TTGTACAAAATTCA-GTT-CATTGCAACAC---CCACTTTACTTTA-TTT-CCACAGACATCAG-----AAGT-ATCGTCAATTAGGA-GTTAAT-CGTA--TACGTTACGTACC----TAGAATCTTATACA-TATATAA-GTA-CCTCTCTCTCCTTCTTACCCCTCCCCC--TTTGTTTTTTT-TAAACCCAAAT---ACACTTTTTTGGGAA---TCCCGTTCATCTC-AAACTT-AC-G-CAGAAACTGGCCCCGCAAAGCGACTGAAATGAA--TGAATGGTGGGGAAATCTATGTCATTCG-TGTTCATCATTTTACGTTGCAATTTAGGTTGAAGGTGTGCG-----TGTTTGTGT-TGTGTGT-GTGGGGGGGGGGGGTGGTATGTGCATATAGGACGT-CT-A-TCTCA--GTCAAGAAACTTATGCATG-TACTATTATCT-AATTACACAGCTGT-CAC--AGTTAAA-TTACAT-TTCATCTTGATTTGATAAAAACAAACTATCACATTTGAA--ACGGTCATCGATCTCGTTTCT--CTCTCGTTGT--AGTA-TTGCAACTGCAA--ATGGGGCGCCTACAGCTAT--TACA-GCACAGC----AAACAATTA--TTTTCTGTGACTTTTTG-TTCCTGAAAA-TGGGGTATATCA-TC-ACTCCCTTTACTAGCCTTTCCTGGATA-CCGTTCG-TGTCA-TGTTACAGTTT-CCCCATGGC--GCAGCGTTTTCTCAACAATTTTCAAAGCGAATTCAAAGCATTTCAGTTTT-AAAACATCTGC-A--CT-AACACCTCCACCATGTTGCA-CCATCGGTG-TTTTGAACGG-AGGCGTCATGGGCCGGACAA-TTCTCCCGCGACTTC-TGACTTGCGTTGCG-GAAGATGGTA-ACCTCCTCACTCCCCTGACGAC-ATGGAGG
gi|5 : ATACAG--C---AATATATCTTTTAAAA---------ATA----G-CACATAT-TACCTAAAAC--TAACCC---GTGTT---------ATCTAAATGA---------GA--GGGGCT--ATAGAT-TAAATT----GGGGCC-AATAATCA-GTGATGCAGTGCTG---ATGTAA-AG------GGGACAATAAATCT-AGAACTTGTCACCAACC-TCA-AAGCTC---AACACTTATAAA-GAATGA-----TAT-TCA-AATGTT-GT-CATTT--ATG-ATCTT-CGACACC----------------CCTCC---CC-CCC------------AGTG--------------------TAGT---TTTTCCG-TTC----TAC--ATT---TTTAT-TGCAAA-AATAGGCTT-----GT--T---A-AC---CAATCATTCTGAAT----C--T-CAGTCT-GCTGTAATATC-TAAATT--TGA--AGCTATTTGTTA-CAAGAAA--TAA-TGA--ACA-TAGA-TACAT--T---ATTATT-GATC-TTTCTA-AAATCTT-TGAC---CAACA---GT-GTGAT-TGGCT--A-CT--G-AAACGATT-----CAGTTCTT-----AACT-CT--T--GCAGTC-A---TT------------------T--GTGTGTAT--GCT--T--GTG-CA--GGTAA--TA-------GAATG---ATA----TC----------------CTGCAA--ATACATGTA-----T-GTGA---TAAAG----C-TT------AGT-ACCATA-A-TT-GACC--T-AAAGATGA-TTT-TAGT---GA---CAAAAATGTTTTAGATATGCGTTAAGTGAAAT-T--GTTTTTATAGATCATGAAGGGCAAAAAAATATATGAAGTCCGATCTGAT-CATAATCTTAAATTACACCAC-A--ATGT-GTATA-TAAT--TTT-CTGTTAATGCAATAAGTCTGAT---T-GC-GTTCACA-GTAAG-ACACATTGTATACACATGCACATCCAGCCTCAGATTGTACAAGATTTAGGTTGCATAAC-A-ACG--ACA-TT-ATTTTATATCACCA-AGGCACCAACCAGAAAGTGAT-GT-CAT-AGGA-GGT-AT-CGTAAATACGTT---TACTAGAGTAG-AT--TATAAAACACATAATGTAACC-----C-CCTCCCCAGCC--CTCCC--TTT-TTTTTC----AA-CCAAAT--CA-ATTTTTTT--GGACCATCTCGGTCATCTC-AAACTTTACAG-CAGAAACTGGCATGGCAAAGCGACGT-AATGAAGGTGAATGG-TGGTAA--TTGTTTCATT-T-T-TAAAATA-CTTACTTTTC-ATGTGGGT----GG-GTGCG------GTGTGT-------------CGGGAGGGTGGGTGGTAT-TGC--ATAAGACGTGCT-ATTCTCAAGATT-AGAA--CTAAGCAGGTTACTATTAAGTAAA-TAC-CA-CTGT-CAC--AG-TAAA-TTACA--ATCACATTGA-TTGAT-AAAACAAAC--TTACATTTGAATGACG---TGTGATCT-GTTT-TA-TTCTCATTGA--A-TA-TTGTAACTGC-AGCACGGGG---CCCCGGCAAT--GG-G-GCTCAGCAGT-AAGCAATTA--TTTTCTGTGA---TTTGCTT-CTG-CAATTGGGGTA-ATC-TTC-A--CCC--TA-TA-TCTTT-C-GGGTACCCGT--GTTGTCACTGCTA----TT-CCCCCT-GCTGGCAG-G---TCTT-ACAA--GTTCAAGCGAATCCACA--ATCTCG---TT-AAGACATCTGC-A-TCT-AACA--TCCACCATG-TGCA-CAATAGGTGTTTTTG--CGGAAG--GTCATGG--CGGACAA-TTTTCCCGCGATTt
gi|6 : ggttgatctacataactggagttatgatcgattcgtatgctctgttgatgacgagtgtgatctctttagctaaaaaattctgctgtaccaagtatatccaaatgaatcgtaaaaaaaaaaccgacaagaatatttttttaatatgtcaaatgccaaatcaA--AA--TAAATGA--ACA-TAGA-TAAAT--TCCA-TTGTTTGAG--TTTAAA-AATCTTT-TGAC---CAACATT-GT-AT-AT---GCT--A-CT--G-AAAACTTG-----CA-TTCTTTT-ACAA-TTCT--T--GCA-TC-A---TT--GA-----CAGT-----------TTTGT--GCTCTT--GTG-CA--GGTAA--TA-TTT-C-AACAG---AGA----TCA--CA---A--AC--CCTGCAA---TA--TGTAATTGTT-GT-C---CAAAG----T-TTTATA--AGT-ACTACA------------T-AA---T---TTT-TAAT---GA-----AA------------ATACTTTA---GATAT----GC----------CATA----GCCAAAAA-TATGTAAAAGTCGATCTGAT-CATAAT-TTAAAT--CACCAT-ACTATGTTGTACA-ATATGATTT-C-TTTAATGCTACAGGCCTGATGCAT-GC--TACACT-AAAAGCCCACATTTTAT--------ACATCCAGC-TC----TGTACAAAATTCAGA-T-CATTAC-ACACG--ACA-TTTA-TTTATTTT-CCACAGACATCAG-----AAGT-AT-G--AA-TAGGA-GTT-AT-CGT---TACGACACGTAGC----TAG-ATCTTATACA--ATATAA-GTA-CC-CTCT---------------CCCCC--TTT-TTTTTTTAAAAA-CCAAATACAACATTTTTTG--GAA---TCCCCCGCATCTC-AAAC-T-ACAG-CAG-AACTGGCCCCGCAAAGCGACTT-AATGAAGGT-AATGT-GGGGAAA-CTAAGTC-TT-G---TTCATTA--TTACGTTTC-ATTTAGGTT--AAG-GTGCGTGTGTTGTGTGTGTGTGTGTGT-G-GGGGGGGGGGGGT--TATGTGC--ATAAGACGTGCT-ATTCTCA--GTC-AGAAACTTATGCA-G-TACTAATTTCT-AA-TACACA-CTGTCCACAAAGTTAAA-TTACACTATCAT-TTGA-TTGATAAAAACAAACG-TTACA-TTGAA--ACGT--GTCGATCT-GTTT-TTCCTCTCGCTTTAAA-TACTTGCAACTGC-A--ATGGGG---CTACAGCT------------CAGCACGTAAACAATTATTTTTTCTGTGAC-TTTTG-TT-CTG-AAA-TGGGGT---TAATTCAACTCCT--CCCTAGCCTTT-CTGGATA-CCGT--G-TGTAGCTGTTACA-TTTACCCCA--GC--GCAG-G-TTT-TC-CCAATTTTTCAAGCGAATTCAAAGCATTTCG--TTTAAAAACA-CTGCAA-TCTAAACACCTCCACCATG-TGCA-CCATCGGTG-TTTTG-ACGG-AG--GTCATGG--CGGAGAA-TTCTCCCGCGA-TTC-TGA-TTG-GCTGTGCGAAGATGGTA-A-CTCC-C-CTCCCCTGACGAC-GTGGGAAG
gi|7 : acATGCCACACAT-AGTGGCAA-TGGACACAAGT-GCATGCTCAACACTATAA--GTATTAGAT---GA-CTTAAATTT-TTTTTTAACATCTTGTCATGTAAT-AT-TATGTAC-CAC--AACCC-CTAACCCATTGTATTTA-GAAG-CACCTAACAAA-AA-----TGAAGGGGACTCGATAAATAGAAATTCGACGGG-TTTAATGATCA-GGGATGCATTTTCGTGGATCTATTAGACTTCTGGGACAATACATTC-CC--CAGTTCACTAACCCTCTTA-TCCTTCAA-CATTTATTAA-AAATGGATCTTCCT-TCA---T-TT-GT-CATTTTTAGG-ATTTT-TGACCCC----------------CCCCC---CCACCCCACCCCTGCCCCAAC---------------------C-GCCCATTCCCCC-CCC----TCC--CTCC----CAG-TG-----AATAG--TTTTCCCGTTCTTTGATATATATAATC-------------TCCT-CAA-ATTGC--AAAAATCTTAAATTAATGAACAG-TATTTGTTACCAA--AAACTAAA-GACCACATTAGATTAAGTGGTTTTATTGTT-GAG--TTTAAAGGAATC-T-TGACCATCAACATAGGTAATTCC-TTTCTTCAACTTGA-AAACTTTGTCGATTA-CTCTCTTAATAAGT-CA--TCCGCAGTC-AATGTTTAGAAC-TAT-GTGCAA-TAGATGTATGCTAGCTCCTGGGTGTCAGGGGTAAATCACTTT-TCAAAAACGCAGATTCCTCATTAATTTACCACAACCTGCAATGATA--TGTACTTGTTGGT-AACTCCAAGCTTTT-TTTATAGGAGT-ACAACACAATTAGCCCACT-AAAC-AGA-TTTCTA-TCCGGAAACCAAA------------ATACTTTA---GTTAT-TTAG--------G--TATA----GTAAAcgtg
16 sequences could not be aligned to this reference sequence:
Unaligned ( gi|8 ): ATCGTTAATCGCTCGTATTTTTACCTGCGGATATATTTCACAGACAATCAGTTTGTCAAAAGACTCTAGACCCAACTTGCTCGCCAGAAAAGTTACTGTCTAGTTCAACAAATTTCACTCGCTAGTAAACGCAGAAGTAGCAACGAAATTGTGAAACCTTGCGTGCACTAGATGCTTTCGTTAGCATGATGTTACATTGGCATGTTATTTGTGCAGAAATGTTGTAGAACAAATTGTCCAATATTCATTCAGAGCAGCAACAATTCTTGCAGCTAGTGCCCAGATGCGATACCAACATTGTATTTCATTTTGTTATTTGGGATTTTA
Unaligned ( gi|9 ): CTCTTCTCACCGCTCCGCCTACTGATGGCAACGTCACATTCGCGTGTTACAGATCCTCAAGCTTGCATTAAACAACATGGCGGCGATGTCGATCTTGCACGGGTATCATGTAATCGCCTCGTTTGGCACGAATTCTTCACAGAAAGTTTGTCAAATAGGATCTGCACATTACTTCATGAGAAAGTTACCGTTTCAAAAAGTGTTCTACTGAGAAAAAGAACGCATGAAACAGCAATTGTAATCAACTGGCCACTGGGATGCTTTCCGTAGCCTGAATGCCATGTTATTACCAGTGTGCATGAAATGG
Unaligned ( gi|10 ): TTTTTAACAGCAAAGTTTGTCAAAGGATCTGACACGTTCAGAGAAAGTTGCGTTCACAAAATATTTCAATGAGTGAAAAACGCAGAAAACAGTTTAAACGTGTGCACTAGGATGCTTTCGTAGCAATGATTATATTATTGTGTGCAACGAGATGGCTGGCAGAACAATATTGTCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTCACAGAAATGGGTAAACTACGGACACCAATTTCGAGTTTATTGTTT
Unaligned ( gi|11 ): CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCGCCCCCCCCCCCCCCCCCCCCCCCCCCCCCACCCCCCCCCCCCCCCCCCCCCCCCCCCCAATGAAAATATGTATTAAAAGTTATGAAATTCATTCTTATCACAGTTTATTTCTAAAATAGTGAATTTCAGAACAAAAAGTCTGCACTAAATGAACAATATTATATAAATTTTGATAAATTTATAACTCTAGCATTGAAACTATTTGTAACA
Unaligned ( gi|12 ): TCACTCTTCCACGCTCCGCCCACTGATGGCAACGTCACACACGTGTTTACAGACTCCGTCAACTTACATGTAAACAACATGGCGAGCGATGTCGATCTTGCACCGGGTATATTGTTAATCGTCCCGTTTGACAACGAATTTTCACAGAAAAGTTTGTCAAATGATCTGACATACTTCAGAGAAAGTTACTTACGTTCACAAAATTTCACTGACTAAAA
Unaligned ( gi|13 ): CCCCACCCCCCCCCCCCCCCCCCCCCCCCCCCCCTCCCCCCCCCCCCCCCCCCCCCCCCCCCCTTTTCACCTACATATTTATAGTACATGTATTGATAACATGAAAGGTATATTATTGCAATTGATATCACAATATTTACGTATTCTAATAACAACCTTGACCTTATTGACTTAGAAATTGATGCGTAGCATCATATCT
Unaligned ( gi|14 ): CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCACGCCCCCCCCCCCCCTTTAATTTGTGCCAACTTCTTAAAAGTATACTTTTATCATACTTGCATATCATTTTTTATTTTAACATTTCAATATAAATTCATCAATCTTTATTTCATAATTAAT
Unaligned ( gi|16 ): CCCCCGCCACCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCTTAAGTATTTCACAATACACATTCACACCGAATAAATATATCTGTATTGACAAAGTTCGTTGATATCACGGAGAAATAT
Unaligned ( gi|17 ): ACTCTTTCCACGCTCCGCCCACTGATGGCAACGTCAGCACGCGTGTTTACAGACTCCGTCAACTTTACACTGTAAAACAACATGGCGATCATGTCGAATCTTGCACGGGTCATC
Unaligned ( gi|18 ): ACTCTTCCACGCTCCGCCCACTGATGGCAACGTCACTCACGTGTTTACAGACTTCGTCAGCTTACATGTAATTAACATGGCGAACGATGTCAATCGTGCATCGGGTACC
Unaligned ( gi|19 ): TTGGTATAAGTTTTTTCTATTGTAAATAGATATATTGTTTTTGCTGGTAAAAGGAATATCTTGTTGATAGGTTGGATCTATTATAAACTGG
Unaligned ( gi|20 ): GATTTAAAAATGTTTAGTTAAAAAATCCTGAATAAAATAGGTATATATTTGCTGCGTTACCGTTCCACTTATAAATGTTTCATTGCTTTC
Unaligned ( gi|21 ): CCCCCCCCCCCCCCCCCCCCCCTCAGCTAAATTCACCCAGATCTGTGGTTATAATTGGTAAGAAAAGTTTAGTGGATATCTCAATA
Unaligned ( gi|22 ): CCCCCCCCCCCCCCCCCCCTTTTTACCCTCAGCGGGATATTTTTTTATTGACATTGTATTAGATAAATTTTGGAAGGTAT
Unaligned ( gi|24 ): CACTCTTCCACGCTCCGCCCACTGGAGGCAACGTCACACACGATGTTTACAGACTCCGTACAACTTACATG
Unaligned ( gi|25 ): ATTCACTCTTCCACGCTCCGCCCACTCCGTCAACTTACATGTAAACAACATGG
Alignments
lowQualScore : 1 111 1 1 33333333 11 11 222222 222 555555555555555555 11 22 111 55555555 22222222 11 1111 1 111 111111 22222 333 1 1 2222 11 11 3333333333333333 1111 999999999999999999999999999999 22222 1111 1 1 111111111111111 222 11 222222222 2 1 11 1 1 11 11 11 11 11 111 111 11111 1111 1111 22222 1 11111 111 555555555555555555555 11 2222 11 22222222222 222 1111 333333333333333 111 11 11 222222 111111 11 222 44444444444444444444444444 111 5555555555555555 1111 1 11 1 1 1 1 1 11 1 1 33333333 1 2222 1 1 111 1 1 1 22222 1 1 11 1 1 1 111 2222 1 11 1 1 1 111 11 11 1 111 1 222 11 111 1 1 1 1 1 11 22222 11 1 111 1 222222 111 11 1 11 1 1 1 1 1 1 11 1 333 2 1 22 11 2222 1 2222 1111 1 1111 111 333333333 3333 22 11 1 1 1 1 11 1 11 1 1 11 1 1 2 11 11 1 11 1 111 1 1111 1 1 1 1 1 1 11 11 1 1 1
lowQualScore : 3 6 999 3 3 7 99999999 88 88 0 0 222222 777 0 777777777777777777 4 8 66 0 33 777 88888888 66 99999999 99 33 6 4444 3 6 1 6 0 0 555 6 999999 44444 1 6 555 5 7 2 5 5 8888888 5 7777 5 5 44 2 00 0 5 3333333333333333 0000 5 77 888 222222222222222222222222222222 4 5 33333 77 3333 3 3 666666666666666 6 555 33 222222222 6 6 0 33 0 0 11 11 11 11 8 8 11 3333 8 99 8 0 8 444 222 8 00000 2222 2222 00000 8 0 0 8 6 8 33333 8 444 666666666666666666666 1 11 5555 88 8 11 22222222222 555 7777 333333333333333 111 99 11 8 111111 444444 55 6 999 6 99 6 777 6 6 99999999999999999999999999 111 1111111111111111 4444 88 8 0 44 33 0 2 3 0 2 0 0 3 2 0 99 0 0 1 0 55555555 0 0000 333 0 0 2 666 0 3 0 3 0 2 55555 0 0 33 66 0 0 0 777 3 1111 0 2 77 0 0 5 222 1111 2 33 33 0 666 0 333 2 33 777 0 0 3 0 3 0 3 3 3 0 2 2 0 22 3 99999 77 0 555 0 888888 2 8 666 2 2 33 2 2 0 3 33 0 3 9 0 0 0 3 0 0 33 3 0 000 0 0 9 33 3 33 8888 0 4444 4444 0 4444 777 999999999 3 4444 55 22 0 0 0 0 33 66 0 2 33 2 2 0 3 0 33 0 2 2 0 0 22 33 0 33 2 0 3 2 777 0 3 4444 0 2 0 0 0 5 0 33 33 0 7 3 2 0 8 6 6 888 8
lowQualScore : . . ... . . . ........ .. .. . . ...... ... . .................. . . .. . .. ... ........ .. ........ .. .. . .... . . . . . . ... . ...... ..... . . ... . . . . . ....... . .... . . .. . .. . . ................ .... . .. ... .............................. . . ..... .. .... . . ............... . ... .. ......... . . . .. . . .. .. .. .. . . .. .... . .. . . . ... ... . ..... .... .... ..... . . . . . . ..... . ... ..................... . .. .... .. . .. ........... ... .... ............... ... .. .. . ...... ...... .. . ... . .. . ... . . .......................... ... ................ .... .. . . .. .. . . . . . . . . . . .. . . . . ........ . .... ... . . . ... . . . . . . ..... . . .. .. . . . ... . .... . . .. . . . ... .... . .. .. . ... . ... . .. ... . . . . . . . . . . . . . .. . ..... .. . ... . ...... . . ... . . .. . . . . .. . . . . . . . . . .. . . ... . . . .. . .. .... . .... .... . .... ... ......... . .... .. .. . . . . .. .. . . .. . . . . . .. . . . . . .. .. . .. . . . . ... . . .... . . . . . . . .. .. . . . . . . . . ... .
lowQualScore : 3 7 333 3 3 3 00000000 33 33 8 8 666666 000 6 444444444444444444 6 0 00 6 44 000 99999999 88 77777777 22 33 7 2222 3 7 7 7 7 7 888 7 222222 33333 5 7 555 5 3 0 7 1 4444444 7 4444 7 7 44 5 11 1 0 1111111111111111 6666 0 55 888 777777777777777777777777777777 0 7 99999 99 6666 3 3 333333333333333 7 222 88 777777777 7 7 8 88 0 0 00 00 66 00 0 0 00 8888 0 00 0 8 0 000 222 0 22222 6666 2222 00000 0 8 8 0 0 0 00000 0 000 222222222222222222222 0 00 8888 88 0 00 22222222222 000 0000 888888888888888 888 00 22 0 000000 333333 88 7 000 7 22 7 555 7 7 77777777777777777777777777 777 7777777777777777 2222 88 0 0 22 88 0 5 2 0 5 0 0 2 5 0 22 0 0 0 8 00000000 0 8888 888 0 0 5 222 0 2 8 2 0 5 00000 0 0 22 55 0 0 0 000 2 2222 0 5 00 0 0 5 888 5555 5 88 88 0 888 0 000 5 88 555 8 0 2 0 2 0 2 2 2 0 5 5 0 55 2 55555 00 0 000 0 222222 5 8 222 5 5 88 5 5 0 2 88 0 2 2 0 0 0 2 0 0 88 2 0 000 0 0 8 88 2 88 8888 0 8888 8888 0 8888 555 555555555 5 5555 55 55 0 0 0 0 22 55 0 5 88 5 5 0 2 0 88 0 5 5 0 0 00 88 0 22 5 0 2 5 000 0 2 2222 0 5 0 0 0 5 0 88 88 0 0 3 0 8 0 7 7 333 0
consensus : AAATGCCAAA-ATCAGTN--AA-TGGACA-AAGCAGCACGC-----ACTTTAA--GTA--AGATACAGA-C---AATATATTTTTTAAAA---------ATAATCAG-CACGTAT-CACCTAAAAC-ATAACCCATTGTATTTAAGAAGGCATCTAAAAAA-AA-----TGA--GGGACTC-ATAAAT-GAAATT----GGG-TC-AATAATCA-GGGATGCGGTGCCG--GATCTAG-AG------GGGACAATACATTT-CC--CCTTTCACTAACC-TCA-A-GCTTTCAAACACTTATAAA-AAATGAATCTTTNT-TCA-AATGTT-GT-CATTTT-AGG-ATCTT-CGACCCC----------------CCCCC----CC-CCCC-CCC---CCCCAGC---------------------CAGT---TTCTCCG-TTC----TAC--ATNCAATTCAT-TGCAAA-AATAGGCTTTT---GT--TTTGA-ACAT-CAATCATTCTGAGT----TCTT-CAGTCTTGCT-TAATATC-TAAATTNATGA--AG-TATTTGTTA-CAA--AA--TAAATGA--ACA-TAGA-TAAAT--TCTAATTGTT-GAG--TTTAAA-AAATCTT-TGAC---CAACATTTGT-ATTAT-TGGCT--AACT--G-AAACTTTG-----CA-TTCTTTT-ACAA-T-CT--T--GCAGTC-A---TT--GAA--TATAGTGC-A-T--GTGTTTGT--GCTCTT--GT-G-CA--GGTAA--TA-TTT-CCAAAAG---AGA----TCA--AA---A--AC--CCTGCAA--ATA--TGTAATTGTT-GT-A---CAAAG----T-TTTATA--AGT-ACTACA-AATT-GCCC-CT-AA---TGA-TTT-TA-T---GA---CAAA------------ATACTTTA---GATAT-T--GC-------G--CATA----GCAAAAAA-TATGTAAAAGTCGATCTGAT-CATAAT-TTANAT--CACCAT-ACTATGTTGTACA-TAATGATTT-C-GTTAATGCAACAGGCCTGATGCAT-GCCGTACACT-ATAAG-ACANATTTTAT-------CACATCCAGC-TC---TTGTACAAAATTCAGGTT-CATTGC-ACACG--ACA-TTTANTTTATTTT-CCACAGACATCAG-----AAGT-AT-GT-AATTAGGA-GTT-AT-CGTA--TACGTTACGTACC----TAG-ATCTTATACA-TATATAA-GTA-CCTCTCTC-CCTCCCTACCC--CCCCC--TTT-TTTTTTT-TAAA-CCAAAT--AACACTTTTTT--GAA---TCCCGTTCATCTC-AAACTT-ACAG-CAGAAACTGGCCCCGCAAAGCGACTT-AATGAAGGTGAATGG-GGGGAAATCTATGTCATT-G-T-TTCATCA-TTTACGTTTC-ATTTAGGTTGAAGG-GTGCG-----TGTGTGTGTGTGTGTGT-G-GGGGGGGGGGGGTGGTATGTGC--ATAAGACGTGCT-ATTCTCA--GTC-AGAAACTTATGCATG-TACTATTATCT-AA-TACACA-CTGT-CAC--AGTTAAA-TTACAC-NTCAT-TTGA-TTGATAAAAACAAAC--TTACATTTGAA--ACG---ATCGATCT-GTTT-T--CTCTCGTTGT--A-TA-TTGCAACTGC-A--ATGGGG---CTACAGCTAT--NA-G-GCACAGCA---AAACAATTA-TTTTTCTGTGAC-TTTTG-TT-CTG-AAA-TGGGGTA-ATCATTC-ACTCCC--TACTAGCCTTT-CTGGATA-CCGT--G-TGTCACTGTTACA-TTT-CCCCATGGC--GCAG-G-TTTCTC-ACAATTTTTCAAGCGAATTCAAAGCATTTCG--TTT-AAAACATCTGC-A-TCT-AACACCTCCACCATG-TGCA-CCATCGGTG-TTTTGAACGG-AG--GTCATGG--CGGACAA-TTCTCCCGCGATTTC-TGACTTG-GCTGTGCGAAGATGGTA-A-CTCCAC-CTCCCCTGACGAC-GTGGAAGG
Reference ( family-1037 ) : AAATGCCAAA-ATCAGTN--AA-TGGACA-AAGCAGCACGC-----ACTTTAA--GTA--AGATACAGA-C---AATATATTTTTTAAAA---------ATAATCAG-CACGTAT-CACCTAAAAC-ATAACCCATTGTATTTAAGAAGGCATCTAAAAAA-AA-----TGA--GGGACTC-ATAAAT-GAAATT----GGG-TC-AATAATCA-GGGATGCGGTGCCG--GATCTAG-AG------GGGACAATACATTT-CC--CCTTTCACTAACC-TCA-A-GCTTTCAAACACTTATAAA-AAATGAATCTTTNT-TCA-AATGTT-GT-CATTTT-AGG-ATCTT-CGACCCC----------------CCCCC----CC-CCCC-CCC---CCCCAGC---------------------CAGT---TTCTCCG-TTC----TAC--ATNCAATTCAT-TGCAAA-AATAGGCTTTT---GT--TTTGA-ACAT-CAATCATTCTGAGT----TCTT-CAGTCTTGCT-TAATATC-TAAATTNATGA--AG-TATTTGTTA-CAA--AA--TAAATGA--ACA-TAGA-TAAAT--TCTAATTGTT-GAG--TTTAAA-AAATCTT-TGAC---CAACATTTGT-ATTAT-TGGCT--AACT--G-AAACTTTG-----CA-TTCTTTT-ACAA-T-CT--T--GCAGTC-A---TT--GAA--TATAGTGC-A-T--GTGTTTGT--GCTCT---GT-G-CA--GGTAA--TA-TTT-CCAAAAG---AGA----TCA--AA---A--AC--CCTGCAA--ATA--TGTAATTGTT-GT-A---CAAAG----T-TTTATA--AGT-ACTACA-AATT-GCCC-CT-AA---TGA-TTT-TA-T---GA---CAAA------------ATACTTTA---GATAT-T--GC-------G--CATA----GCAAAAAA-TATGTAAAAGTCGATCTGAT-CATAAT-TTANAT--CACCAT-ACTATGTTGTACA-TAATGATTT-C-GTTAATGCAACAGGCCTGATGCAT-GCCGTACACT-ATAAG-ACANATTTTAT-------CACATCCAGC-TC---TTGTACAAAATTCAGGTT-CATTGC-ACACG--ACA-TTTANTTTATTTT-CCACAGACATCAG-----AAGT-AT-GT-AATTAGGA-GTT-AT-CGTA--TACGTTACGTACC----TAG-ATCTTATACA-TATATAA-GTA-CCTCTCTC-CCTCCCTACCC--CCCCC--TTT-TTTTTTT-TAAA-CCAAAT--AACACTTTTTT--GAA---TCCCGTTCATCTC-AAACTT-ACAG-CAGAAACTGGCCCCGCAAAGCGACTT-AATGAAGGTGAATGG-GGGGAAATCTATGTCATT-G-T-TTCATCA-TTTACGTTTC-ATTTAGGTTGAAGG-GTGCG-----TGTGTGTGTGTGTGTGT-G-GGGGGGGGGGGGTGGTATGTGC--ATAAGACGTGCT-ATTCTCA--GTC-AGAAACTTATGCATG-TACTATTATCT-AA-TACACA-CTGT-CAC--AGTTAAA-TTACAC-NTCAT-TTGA-TTGATAAAAACAAAC--TTACATTTGAA--ACG---ATCGATCT-GTTT-T--CTCTCGTTGT--A-TA-TTGCAACTGC-A--ATGGGG---CTACAGCTAT--NA-G-GCACAGCA---AAACAATTA-TTTTTCTGTGAC-TTTTG-TT-CTG-AAA-TGGGGTA-ATCATTC-ACTCCC--TACTAGCCTTT-CTGGATA-CCGT--G-TGTCACTGTTACA-TTT-CCCCATGGC--GCAG-G-TTTCTC-ACAATTTTTCAAGCGAATTCAAAGCATTTCG--TTT-AAAACATCTGC-A-TCT-AACACCTCCACCATG-TGCA-CCATCGGTG-TTTTGAACGG-AG--GTCATGG--CGGACAA-TTCTCCCGCGATTTC-TGACTTG-GCTGTGCGAAGATGGTA-A-CTCCAC-CTCCCCTGACGAC-GTGGAAGG
gi|1 : ATACAG--C---AATATATCTTTTAAAA---------ATA----G-CACATAT-TACCTAAAAC--TAACCC---GTGTT---------ATCTAAATGA---------GA--GGGGCT--ATAGAT-TAAATT----GGGGCC-AATAATCA-GTGATGCAGTGCTG---ATGTAA-AG------GGGACAATAAATCT-AGAACTTGTCACCAACC-TCA-AAGCTC---AACACTTATAAA-GAATGA-----TAT-TCA-AATGTT-GT-CATTT--ATG-ATCTT-CGACACC----------------CCTCC----CC-CCC------------AGTG--------------------TAGT---TTTTCCG-TTC----TAC--ATT---TTTAT-TGCAAA-AATAGGC--TT---GT--T---A-AC---CAATCATTCTGAAT------CT-CAGTC-TGCTGTAATATC-TAAAT
gi|15 : actcttccacgctccgccctgatggcataacagtcatcacgtgttacaagactccgtcaacttacatgtaaacaacatgggtgcatgtcatgcttgcaccgtacatattgtaaatcgcctcgttttgacgacgaattgttcacagaaaagttgtcaaggatctgacacagcttgcagagaaagttacgttcactaaaatttatgagtcaataacgcagaacagcacttgtaaacgggtgctactcatagtctcgatgctttcgtaacatggatgcatgtattatgtgtacagatatggctgcagaaaaactgtcccgatatttttacagagagctacatgctgcagctagctgcatcagatggtaaactacgggaaattaaacgagtttaattttttgtgaggaatttaaaaatgttgttttagttaaaaaacttaataaaatagccctaaaacgtctgcgtttacccgttcccattttataagatgttttcatctgctgtctgcatatttatattgtatttttcagcctaactaatagccacttccacaaatattgaactacattgggatatattaaaaattggttgcttaaagatttatatagtggcattgcatatgtatcccccttttttccaggtctatctccctaatccaatatatatgctaataaaatacacggacggttcgggtggtaacacccgtcacaggcaatcacagaagggaaaaaaactcgtaacgtaattaattatagtaatagttcatttatttgtaaatgccatattgaacacagtaaacttatattttcagccagtttaaagataacatccatgggtcagcaatggaatggaacacacaaacaacatacaagtcaataaggcagataatctttatatcaaagttgatcaatgcatagtgcgattgaaattaaaattcttgtattccaaataattgtattgccctgatcatgttgagaataatgcaattcttttgtcatgtcctccttcttttacgtacttgggaaacttgcacaatcaaatctccaagcaaagtacatgtttgcaaggttaattgtaaaatatatcaaaacacgccttggtattcttttctattgtaaagagaattgttttctgctaaaaaggggaagcttgtgatactgggttgatctacataactggagttatgatcgattcgtatgctctgttgatgacgagtgtgatctctttagctaaaaaattctgctgtaccaagtatatccaaatgaatcgtaaaaaaaaaaccgacaagaatatttttttaatatgtcaaatgccaaatcaT-AGG----TC-CAACCCC----------------CCCCC----CC-CCCC-CCC---CCCCCTC------------------------T---CTCTCTG-TT-----TAT--ATGCGATTC
gi|2 : catgtttttcataataaactcAAATGCCAAA-ATCAGTT--AA-TGGACA-AAGCAGCAC-------ATTTTAACAGTA--AGATACAAA-C---AAC---TTTTTTTACA---------ATAATCAGTCATTTAT-CAGC--AAACTATAACC-ATTGTATTTAAGAAGGCA-ATAAAAAA-AAACCAATGA--GGGACTC-ATAAAT-GAAATT----GGA-TC-AATTATCAAGGGATGCGGTGGCG--GATCTAG-AG------GG-ACAATACATTT-TC--CCCTTCACTA-CC-TCA---GCTTTCAAACA-TTATAAA-A--TGAATCTTTCT-TCT---TGTT-GTTCATTTT-AGGCATCTT-CGACCCC----------------CCCCCCCCC-----CC-CCC---CCCCA------------------------AGT---TT-TCCGTTTT----TAT--ATACAATTCATCTGCAAAGAATAGGCTTTT---GT--TTTGA-ACAT-CAAT--TTCTGAGT----TCTTCCAGTCTTGCTCTAATATC-TAAATTTATGA--AG-TATTTGTTA-CAA--AA--TAAATGA--ACA-TAAA-TAAAT--TCTAATTGTT-GAG--TTTAAA-AAATCTTCTGAC---CAACATTTGT-ACTAT-TGGCT--AACT--G-AAACTTTG-----CA-TTCTTTT-ACAA-T-CT--T--GCAGTC-A---TT--GAA--TATAGTGC-ATT--GTGTTTGT--GCTCT---G--G-CA--GGTAA--TA-TTT-CCAAAAG---AGA----TCA--AA---A--AC--CCTGCAA--ATA--TGTAATTGTT-GT-A----AAAG----T-TTTATA--AGT-ACTACA-AATT-GCCC-CT-AA---TGA-TTT-TA-T---GA---CATA------------ATACTTTA---GATAC-T--GC-------G--CATA----GCAAAAAA-TATGTAAAAGTCGATCTGAT-CATAAT-TT-TAT--CACCAT-ACTATGTTGTACA-TAATGATTT-C-GTT-ATGCATCAGGCCTGATGCAT-GCCATACACT-ATAAG-ACAAATTTTAT-------CACATCCAGC-TC---TTGTACAAAATTCAGATT-CATTGC-ACACGCCACA-TTTAGTTTATTTT-CCACAGACATCAG-----AAGT-AT-GT-AATTAGGAGGTT-ATCCGTA--TACGTTACGTACC----TAG-ATCTTATACA-TATATAA-GTA-CCTCTCTC-TCTCTCTACCC--CCCCCCTTTT-TTTTTTT-TAAA-CCAAAT--AACACTTTTTT--GAA---TCCCGTTCATCTCAAAACTT-ACAGCCAGAAAC-GGCCCCGC-AAGCGACTT-AATGAAGGTGAATGG-GGGGAAATCTATGTCATT-GTT-TTCATCA-TTTACGTTTC-ATTTAGGTTGAAGG-GTGCG-----TGTGTGTGTGTGTGTGTGG-GGGGGGGGGGGGTGGTATGTGC--ATAAGAC--GCTCATTCTCA--GTC-AGAAACTTATGCATG-TACTATTATCT-AA-TACACA-CTGT-CAC--AGTTAAATTTACA--TTCAT-TTGA-TTGAATAAAACAAAC--TTACATTTGAA--ACG---ATCGATCT-GTTT-T--CTCTCGTTGT--A-TA-TTGCAACTGC-A--ATGGGG---CTACAGCTATTACA-GCGCACAGCA---AAACAATTA-TTTTTCTGTGAC-TTTTG-TT-CTG-AAA-TGGGGTA-ATCATTC-ACTCCC--TACTAGCCTTT-CTGGATA-CCGT--G-TGTCACTGTTACA-TTTCCCCCATGGC--GCAG-G-TTTCTC-ACAATTTTTCAAGCGAATTCAAAGCATTTCG--TTT-AAAACATCTGC-ACTCT-AACACCTCCACCATG-TGCAGCCATCGGTG-TTTTGAACGG-AG--GTCATGG--CGGACAACTTCTCCCGCGATTTCGTGATT---GCGTTGCGGAGATGGTACA-CTCCCA-CTCCCCTGACGACTATGGAAGGtcggtaatagtgtacagttctattatgaacattagagaacattttcaaaatcaaatattaa
gi|23 : AAAG----T-TTTATA--AGT-ACTAAA-AATT-GCCC-CTAAA---CGA-TTT-TA-T---GA---AAAA------------ATACTTTA---GAT---------------------------------A-TATGTAAAAGTCGATCT-AT-Ct
gi|26 : TTG-GCTGTGCGAAGATGGTA-A-CTCCAC-CTTCCCTGACGAC-GTGGAAG
gi|27 : aTA-A-CTCCAC-CTCCCCTGACGAC-GTGGAAGcat
gi|28 : TTG-GCTGTGCGAAGATGGTA-A-CTCCAC-CTctg
gi|3 : TTATAAATAAATGAAT-TATGTATCATAATGT------ACATT-A---------CGGCCCC----------------CCCCC----CC-CCCC-CCC---CCCCt
gi|3 : actcttccacgctccgccactggatggcaacgtcacacgcgtgtttacagactcgtcaacttgcatgtaaacaacatggcgcgcgatgtccgctcttgcaccgggtatcatgttaagtcgccttcgtttgaaccacgaaattttacagaaaagttgtccaaaggatctgacacccttctgagaaagttacgttcacaaaatttcactgagtaaaatcgcagaaacacaattgtaaaacgtgtgcaactagatgctttcgtagcatgaattgcattgttattacagtggcagaaatggtgtagaacaaattgtcccaatattttaacagagagctactgttctgaggctagtgcacagatgggtaaacacggtgcaattattgagtttaaattgttttgttaaggaatttaaaatggttgtttagttaaaaactgaataaaaaataggctatatttgcgcgttttaccgttcttttaatttttataaatgtttcatctgcttttaactaaaatcaccatcttccaaatgtgaaactatcaattgtttaagattttaaggacaagtatcccccttttccccccaggctaccctaatccaatatatttctataaatacacccgtccacacaaatccaacggatggggggAAATGCCAAA-ATCATTA--AACTCGACA-AAACAGCATGC-----ACATTAA--GTA--AG-TACAAAAC---AAT-T-TTTTTTAAAC---------ATA-TC---CATATATGCACC----AC-ATAACCCATAGTATT--AGA--GCAT--AAAAAACAA-----TGA--GGGA-TC-ATAAAT-GAAATT----GGG-TC-AATAGCAA-GGGGAGCACTGCTG--GATCTAG-AG------GGGACAATACATTT-CC--CCTT-CACTCAC--TCA---GCTT-CAAACA-TTATAAA-AA-TGAATCTTCTT-T-----TGTT-GT-CATTTT-AGG-ATC---------------------------CCCC----CC-CCCC-CCC---CCCAAG-----------------------------TTTTCCG-TTTATA-TACAAATACAATTCAT-TGCAAA-AATAGGC-TTT---G----TTGA-AC---C-ATCATTCTGAGTCTCATCTT--AGTCTTGCTCTAATATC-acacgtattaaaaatacagtagccaattaaagatagcattcctgtggggtcaatggaactgaatctaactcaaagacaagatacattaagtcatacggcaaagaatatttatcatcaaaattgatcaatgccacaagtgttgaaatataaaactttttgaattccaaataatgttctgctgcctcatcagtgttaaaataattggcaaattcttttgtcatgtccctccttctttacatacttgggaacttgcaacagatacaaacttccaacaaagtacatgttgcagttcaattggtaatatcaaatcagccttcataagtgggtatttttttccattgtaagtagaatattgtttttggtacaaagggatagctttgttgatagggttgatctaataactggagttgatgatgattcagtctgaggtatgctctgttgatgaagagtgtggtttttgactaaaaaatgctgctgtaccaagtattctcaaatgaattgtaaacaaagacagaatattttttaatactgtgcaaaatgccaaaatcattaaactcgacaaaacagcatgcacattaagtaagtacaaaacaattttttttaaacatatccatatatgcaccacataacccatagtattagagcataaaaaacaatgagggatcataaatgaaattgggtcaatagcaaggggagcactgctggatctagaggggacaatacatttccccttcactcactcagcttcaaacattataaaaatgaatcttcttttgttgtcattttaggatcccccccccccccccccaagttttccgtttatatacaaatacaattcattgcaaaaataggctttgttgaaccatcattctgagtctcatcttagtcttgctctaatatc
gi|4 : actcttccacgctccgccactggatggcaacgtcacacgcgtgtttacagactcgtcaacttgcatgtaaacaacatggcgcgcgatgtccgctcttgcaccgggtatcatgttaagtcgccttcgtttgaaccacgaaattttacagaaaagttgtccaaaggatctgacacccttctgagaaagttacgttcacaaaatttcactgagtaaaatcgcagaaacacaattgtaaaacgtgtgcaactagatgctttcgtagcatgaattgcattgttattacagtggcagaaatggtgtagaacaaattgtcccaatattttaacagagagctactgttctgaggctagtgcacagatgggtaaacacggtgcaattattgagtttaaattgttttgttaaggaatttaaaatggttgtttagttaaaaactgaataaaaaataggctatatttgcgcgttttaccgttcttttaatttttataaatgtttcatctgcttttaactaaaatcaccatcttccaaatgtgaaactatcaattgtttaagattttaaggacaagtatcccccttttccccccaggctaccctaatccaatatatttctataaatacacccgtccacacaaatccaacggatggggggggggggggggggggggggggggccgtaatgtacattatgatacataattcatttatttataaacacgtattaaaaatacagtagccaattaaagatagcattcctgtggggtcaatggaactgaatctaactcaaagacaagatacattaagtcatacggcaaagaatatttatcatcaaaattgatcaatgccacaagtgttgaaatataaaactttttgaattccaaataatgttctgctgcctcatcagtgttaaaataattggcaaattcttttgtcatgtccctccttctttacatacttgggaacttgcaacagatacaaacttccaacaaagtacatgttgcagttcaattggtaatatcaaatcagccttcataagtgggtatttttttccattgtaagtagaatattgtttttggtacaaagggatagctttgttgatagggttgatctaataactggagttgatgatgattcagtctgaggtatgctctgttgatgaagagtgtggtttttgactaaaaaatgctgctgtaccaagtattctcaaatgaattgtaaacaaagacagaatattttttaatactgtgcaGCATTTGAAAAA-AA-----TGA--GGGACTC-ATAAAT-GAAATT----GGA-TC-AATA-TCA-GGGATGCGGTGCTG--GATCTAG-AG------GGGACAATACATTTTCC--CCTCTCACTAACC-TCA---GCTTTCAA-CATTAGTAAA-AATCGAATCTTT-T-TC----TGTTTGT-CATTT--AGGCATCTTTCGACCCCCCCCCCCCCCCCCCCCCCCCC----CC-CCCC-CCC---CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCGT---TTCCCCC-CCCCATTTGT--ATACAATTCATCTGCAAAGAATAG--CTTT---GT--TTTGA-ACAT-CAAT--TTCTGAGT----TCTTCCAGTCTTGCT-TAATATC-TAAATTGATGA--AG-TATTTGTTA-CAA--AA--TAAATGA--ACA-TAAA-TAAAT--TCTAATTGTT-GAGTTTTTAAA-AAATCTT-TGAC---CAACATTTGT-ATCGTATGGCT--AACT--GCAAACTTTG-----CA-TTC-TTT-ACAA-T-CTTCT--GCAGTCAA---TT--GAAATTATAGTGC-A-T--GTGTTTGT--GCTC----GTGG-CA--GGTAA---A-TTGACCAAAAAGC-AGA----TCA--AA---G--AC--CCTGCAA--ATAG-TGTAA-TGTT-GT-A---CAAAG----TCTTTATAC-AGTAACTACA-AATT-GCCC-CT-AAC--TGACTTT-TACT---G-----AAC------------ATACTTTA---GATATAT--GC-------G--CATA----GCAAAAAA--ATGTAAAAGTCGATCTGATCCATAAT-TAATAT--CACCATAACTATGTTGTACATTAATGATTTGC-GTTAGTGCAACAGGCCTGATGCATCGCCATACACTAATAAG-ACAATTTCTAT-------CACATCCAGC-TC---TTGTACAAAATTCA-GTT-CATTGCAACAC---CCACTTTACTTTA-TTT-CCACAGACATCAG-----AAGT-ATCGTCAATTAGGA-GTTAAT-CGTA--TACGTTACGTACC----TAGAATCTTATACA-TATATAA-GTA-CCTCTCTCTCCTTCTTACCCCTCCCCC--TTTGTTTTTTT-TAAACCCAAAT---ACACTTTTTTGGGAA---TCCCGTTCATCTC-AAACTT-AC-G-CAGAAACTGGCCCCGCAAAGCGACTGAAATGAA--TGAATGGTGGGGAAATCTATGTCATTCG-TGTTCATCATTTTACGTTGCAATTTAGGTTGAAGGTGTGCG-----TGTTTGTGT-TGTGTGT-GTGGGGGGGGGGGGTGGTATGTGCATATAGGACGT-CT-A-TCTCA--GTCAAGAAACTTATGCATG-TACTATTATCT-AATTACACAGCTGT-CAC--AGTTAAA-TTACAT-TTCATCTTGATTTGATAAAAACAAACTATCACATTTGAA--ACGGTCATCGATCTCGTTTCT--CTCTCGTTGT--AGTA-TTGCAACTGCAA--ATGGGGCGCCTACAGCTAT--TACA-GCACAGC----AAACAATTA--TTTTCTGTGACTTTTTG-TTCCTGAAAA-TGGGGTATATCA-TC-ACTCCCTTTACTAGCCTTTCCTGGATA-CCGTTCG-TGTCA-TGTTACAGTTT-CCCCATGGC--GCAGCGTTTTCTCAACAATTTTCAAAGCGAATTCAAAGCATTTCAGTTTT-AAAACATCTGC-A--CT-AACACCTCCACCATGTTGCA-CCATCGGTG-TTTTGAACGG-AGGCGTCATGGGCCGGACAA-TTCTCCCGCGACTTC-TGACTTGCGTTGCG-GAAGATGGTA-ACCTCCTCACTCCCCTGACGAC-ATGGAGG
gi|5 : ATACAG--C---AATATATCTTTTAAAA---------ATA----G-CACATAT-TACCTAAAAC--TAACCC---GTGTT---------ATCTAAATGA---------GA--GGGGCT--ATAGAT-TAAATT----GGGGCC-AATAATCA-GTGATGCAGTGCTG---ATGTAA-AG------GGGACAATAAATCT-AGAACTTGTCACCAACC-TCA-AAGCTC---AACACTTATAAA-GAATGA-----TAT-TCA-AATGTT-GT-CATTT--ATG-ATCTT-CGACACC----------------CCTCC----CC-CCC------------AGTG--------------------TAGT---TTTTCCG-TTC----TAC--ATT---TTTAT-TGCAAA-AATAGGCTT-----GT--T---A-AC---CAATCATTCTGAAT----C--T-CAGTCT-GCTGTAATATC-TAAATT--TGA--AGCTATTTGTTA-CAAGAAA--TAA-TGA--ACA-TAGA-TACAT--T---ATTATT-GATC-TTTCTA-AAATCTT-TGAC---CAACA---GT-GTGAT-TGGCT--A-CT--G-AAACGATT-----CAGTTCTT-----AACT-CT--T--GCAGTC-A---TT------------------T--GTGTGTAT--GCT-T---GT-G-CA--GGTAA--TA-------GAATG---ATA----TC----------------CTGCAA--ATACATGTA-----T-GTGA---TAAAG----C-TT------AGT-ACCATA-A-TT-GACC--T-AAAGATGA-TTT-TAGT---GA---CAAAAATGTTTTAGATATGCGTTAAGTGAAAT-T--GTTTTTATAGATCATGAAGGGCAAAAAAATATATGAAGTCCGATCTGAT-CATAATCTTAAATTACACCAC-A--ATGT-GTATA-TAAT--TTT-CTGTTAATGCAATAAGTCTGAT---T-GC-GTTCACA-GTAAG-ACACATTGTATACACATGCACATCCAGCCTCAGATTGTACAAGATTTAGGTTGCATAAC-A-ACG--ACA-TT-ATTTTATATCACCA-AGGCACCAACCAGAAAGTGAT-GT-CAT-AGGA-GGT-AT-CGTAAATACGTT---TACTAGAGTAG-AT--TATAAAACACATAATGTAACC-----C-CCTCCCCAGCC--CTCCC--TTT-TTTTTC----AA-CCAAAT--CA-ATTTTTTT--GGACCATCTCGGTCATCTC-AAACTTTACAG-CAGAAACTGGCATGGCAAAGCGACGT-AATGAAGGTGAATGG-TGGTAA--TTGTTTCATT-T-T-TAAAATA-CTTACTTTTC-ATGTGGGT----GG-GTGCG------GTGTGT-------------CGGGAGGGTGGGTGGTAT-TGC--ATAAGACGTGCT-ATTCTCAAGATT-AGAA--CTAAGCAGGTTACTATTAAGTAAA-TAC-CA-CTGT-CAC--AG-TAAA-TTACA--ATCACATTGA-TTGAT-AAAACAAAC--TTACATTTGAATGACG---TGTGATCT-GTTT-TA-TTCTCATTGA--A-TA-TTGTAACTGC-AGCACGGGG---CCCCGGCAAT--GG-G-GCTCAGCAGT-AAGCAATTA--TTTTCTGTGA---TTTGCTT-CTG-CAATTGGGGTA-ATC-TTC-A--CCC--TA-TA-TCTTT-C-GGGTACCCGT--GTTGTCACTGCTA----TT-CCCCCT-GCTGGCAG-G---TCTT-ACAA--GTTCAAGCGAATCCACA--ATCTCG---TT-AAGACATCTGC-A-TCT-AACA--TCCACCATG-TGCA-CAATAGGTGTTTTTG--CGGAAG--GTCATGG--CGGACAA-TTTTCCCGCGATTt
gi|6 : ggttgatctacataactggagttatgatcgattcgtatgctctgttgatgacgagtgtgatctctttagctaaaaaattctgctgtaccaagtatatccaaatgaatcgtaaaaaaaaaaccgacaagaatatttttttaatatgtcaaatgccaaatcaA--AA--TAAATGA--ACA-TAGA-TAAAT--TCCA-TTGTTTGAG--TTTAAA-AATCTTT-TGAC---CAACATT-GT-AT-AT---GCT--A-CT--G-AAAACTTG-----CA-TTCTTTT-ACAA-TTCT--T--GCA-TC-A---TT--GA-----CAGT-----------TTTGT--GCTCTT--GT-G-CA--GGTAA--TA-TTT-C-AACAG---AGA----TCA--CA---A--AC--CCTGCAA---TA--TGTAATTGTT-GT-C---CAAAG----T-TTTATA--AGT-ACTACA------------T-AA---T---TTT-TAAT---GA-----AA------------ATACTTTA---GATAT----GC----------CATA----GCCAAAAA-TATGTAAAAGTCGATCTGAT-CATAAT-TTAAAT--CACCAT-ACTATGTTGTACA-ATATGATTT-C-TTTAATGCTACAGGCCTGATGCAT-GC--TACACT-AAAAGCCCACATTTTAT--------ACATCCAGC-TC----TGTACAAAATTCAGA-T-CATTAC-ACACG--ACA-TTTA-TTTATTTT-CCACAGACATCAG-----AAGT-AT-G--AA-TAGGA-GTT-AT-CGT---TACGACACGTAGC----TAG-ATCTTATACA--ATATAA-GTA-CC-CTCT---------------CCCCC--TTT-TTTTTTTAAAAA-CCAAATACAACATTTTTTG--GAA---TCCCCCGCATCTC-AAAC-T-ACAG-CAG-AACTGGCCCCGCAAAGCGACTT-AATGAAGGT-AATGT-GGGGAAA-CTAAGTC-TT-G---TTCATTA--TTACGTTTC-ATTTAGGTT--AAG-GTGCGTGTGTTGTGTGTGTGTGTGTGT-G-GGGGGGGGGGGGT--TATGTGC--ATAAGACGTGCT-ATTCTCA--GTC-AGAAACTTATGCA-G-TACTAATTTCT-AA-TACACA-CTGTCCACAAAGTTAAA-TTACACTATCAT-TTGA-TTGATAAAAACAAACG-TTACA-TTGAA--ACGT--GTCGATCT-GTTT-TTCCTCTCGCTTTAAA-TACTTGCAACTGC-A--ATGGGG---CTACAGCT------------CAGCACGTAAACAATTATTTTTTCTGTGAC-TTTTG-TT-CTG-AAA-TGGGGT---TAATTCAACTCCT--CCCTAGCCTTT-CTGGATA-CCGT--G-TGTAGCTGTTACA-TTTACCCCA--GC--GCAG-G-TTT-TC-CCAATTTTTCAAGCGAATTCAAAGCATTTCG--TTTAAAAACA-CTGCAA-TCTAAACACCTCCACCATG-TGCA-CCATCGGTG-TTTTG-ACGG-AG--GTCATGG--CGGAGAA-TTCTCCCGCGA-TTC-TGA-TTG-GCTGTGCGAAGATGGTA-A-CTCC-C-CTCCCCTGACGAC-GTGGGAAG
gi|7 : acATGCCACACAT-AGTGGCAA-TGGACACAAGT-GCATGCTCAACACTATAA--GTATTAGAT---GA-CTTAAATTT-TTTTTTAACATCTTGTCATGTAAT-AT-TATGTAC-CAC--AACCC-CTAACCCATTGTATTTA-GAAG-CACCTAACAAA-AA-----TGAAGGGGACTCGATAAATAGAAATTCGACGGG-TTTAATGATCA-GGGATGCATTTTCGTGGATCTATTAGACTTCTGGGACAATACATTC-CC--CAGTTCACTAACCCTCTTA-TCCTTCAA-CATTTATTAA-AAATGGATCTTCCT-TCA---T-TT-GT-CATTTTTAGG-ATTTT-TGACCCC----------------CCCCC----CCACCCCACCCCTGCCCCAAC---------------------C-GCCCATTCCCCC-CCC----TCC--CTCC----CAG-TG-----AATAG--TTTTCCCGTTCTTTGATATATATAATC-------------TCCT-CAA-ATTGC--AAAAATCTTAAATTAATGAACAG-TATTTGTTACCAA--AAACTAAA-GACCACATTAGATTAAGTGGTTTTATTGTT-GAG--TTTAAAGGAATC-T-TGACCATCAACATAGGTAATTCC-TTTCTTCAACTTGA-AAACTTTGTCGATTA-CTCTCTTAATAAGT-CA--TCCGCAGTC-AATGTTTAGAAC-TAT-GTGCAA-TAGATGTATGCTAGCTCCTGGGT-GTCAGGGGTAAATCACTTT-TCAAAAACGCAGATTCCTCATTAATTTACCACAACCTGCAATGATA--TGTACTTGTTGGT-AACTCCAAGCTTTT-TTTATAGGAGT-ACAACACAATTAGCCCACT-AAAC-AGA-TTTCTA-TCCGGAAACCAAA------------ATACTTTA---GTTAT-TTAG--------G--TATA----GTAAAcgtg
16 sequences could not be aligned to this reference sequence:
Unaligned ( gi|8 ): ATCGTTAATCGCTCGTATTTTTACCTGCGGATATATTTCACAGACAATCAGTTTGTCAAAAGACTCTAGACCCAACTTGCTCGCCAGAAAAGTTACTGTCTAGTTCAACAAATTTCACTCGCTAGTAAACGCAGAAGTAGCAACGAAATTGTGAAACCTTGCGTGCACTAGATGCTTTCGTTAGCATGATGTTACATTGGCATGTTATTTGTGCAGAAATGTTGTAGAACAAATTGTCCAATATTCATTCAGAGCAGCAACAATTCTTGCAGCTAGTGCCCAGATGCGATACCAACATTGTATTTCATTTTGTTATTTGGGATTTTA
Unaligned ( gi|9 ): CTCTTCTCACCGCTCCGCCTACTGATGGCAACGTCACATTCGCGTGTTACAGATCCTCAAGCTTGCATTAAACAACATGGCGGCGATGTCGATCTTGCACGGGTATCATGTAATCGCCTCGTTTGGCACGAATTCTTCACAGAAAGTTTGTCAAATAGGATCTGCACATTACTTCATGAGAAAGTTACCGTTTCAAAAAGTGTTCTACTGAGAAAAAGAACGCATGAAACAGCAATTGTAATCAACTGGCCACTGGGATGCTTTCCGTAGCCTGAATGCCATGTTATTACCAGTGTGCATGAAATGG
Unaligned ( gi|10 ): TTTTTAACAGCAAAGTTTGTCAAAGGATCTGACACGTTCAGAGAAAGTTGCGTTCACAAAATATTTCAATGAGTGAAAAACGCAGAAAACAGTTTAAACGTGTGCACTAGGATGCTTTCGTAGCAATGATTATATTATTGTGTGCAACGAGATGGCTGGCAGAACAATATTGTCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTCACAGAAATGGGTAAACTACGGACACCAATTTCGAGTTTATTGTTT
Unaligned ( gi|11 ): CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCGCCCCCCCCCCCCCCCCCCCCCCCCCCCCCACCCCCCCCCCCCCCCCCCCCCCCCCCCCAATGAAAATATGTATTAAAAGTTATGAAATTCATTCTTATCACAGTTTATTTCTAAAATAGTGAATTTCAGAACAAAAAGTCTGCACTAAATGAACAATATTATATAAATTTTGATAAATTTATAACTCTAGCATTGAAACTATTTGTAACA
Unaligned ( gi|12 ): TCACTCTTCCACGCTCCGCCCACTGATGGCAACGTCACACACGTGTTTACAGACTCCGTCAACTTACATGTAAACAACATGGCGAGCGATGTCGATCTTGCACCGGGTATATTGTTAATCGTCCCGTTTGACAACGAATTTTCACAGAAAAGTTTGTCAAATGATCTGACATACTTCAGAGAAAGTTACTTACGTTCACAAAATTTCACTGACTAAAA
Unaligned ( gi|13 ): CCCCACCCCCCCCCCCCCCCCCCCCCCCCCCCCCTCCCCCCCCCCCCCCCCCCCCCCCCCCCCTTTTCACCTACATATTTATAGTACATGTATTGATAACATGAAAGGTATATTATTGCAATTGATATCACAATATTTACGTATTCTAATAACAACCTTGACCTTATTGACTTAGAAATTGATGCGTAGCATCATATCT
Unaligned ( gi|14 ): CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCACGCCCCCCCCCCCCCTTTAATTTGTGCCAACTTCTTAAAAGTATACTTTTATCATACTTGCATATCATTTTTTATTTTAACATTTCAATATAAATTCATCAATCTTTATTTCATAATTAAT
Unaligned ( gi|16 ): CCCCCGCCACCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCTTAAGTATTTCACAATACACATTCACACCGAATAAATATATCTGTATTGACAAAGTTCGTTGATATCACGGAGAAATAT
Unaligned ( gi|17 ): ACTCTTTCCACGCTCCGCCCACTGATGGCAACGTCAGCACGCGTGTTTACAGACTCCGTCAACTTTACACTGTAAAACAACATGGCGATCATGTCGAATCTTGCACGGGTCATC
Unaligned ( gi|18 ): ACTCTTCCACGCTCCGCCCACTGATGGCAACGTCACTCACGTGTTTACAGACTTCGTCAGCTTACATGTAATTAACATGGCGAACGATGTCAATCGTGCATCGGGTACC
Unaligned ( gi|19 ): TTGGTATAAGTTTTTTCTATTGTAAATAGATATATTGTTTTTGCTGGTAAAAGGAATATCTTGTTGATAGGTTGGATCTATTATAAACTGG
Unaligned ( gi|20 ): GATTTAAAAATGTTTAGTTAAAAAATCCTGAATAAAATAGGTATATATTTGCTGCGTTACCGTTCCACTTATAAATGTTTCATTGCTTTC
Unaligned ( gi|21 ): CCCCCCCCCCCCCCCCCCCCCCTCAGCTAAATTCACCCAGATCTGTGGTTATAATTGGTAAGAAAAGTTTAGTGGATATCTCAATA
Unaligned ( gi|22 ): CCCCCCCCCCCCCCCCCCCTTTTTACCCTCAGCGGGATATTTTTTTATTGACATTGTATTAGATAAATTTTGGAAGGTAT
Unaligned ( gi|24 ): CACTCTTCCACGCTCCGCCCACTGGAGGCAACGTCACACACGATGTTTACAGACTCCGTACAACTTACATG
Unaligned ( gi|25 ): ATTCACTCTTCCACGCTCCGCCCACTCCGTCAACTTACATGTAAACAACATGG
Alignments
lowQualScore : 1 111 1 1 33333333 11 11 222222 222 555555555555555555 11 22 111 55555555 22222222 11 1111 1 111 111111 22222 333 1 1 2222 11 11 3333333333333333 999999999999999999999999999999 22222 1111 1 1 111111111111111 222 11 222222222 2 1 11 1 1 11 11 11 11 11 111 111 11111 1111 1111 22222 1 11111 111 555555555555555555555 11 111111 11 22222222222 222 1111 333333333333333 111 11 11 222222 111111 11 222 44444444444444444444444444 111 5555555555555555 1111 1 11 1 1 1 1 1 11 1 1 33333333 1 2222 1 1 111 1 1 1 22222 1 1 11 1 1 1 111 2222 1 11 1 1 1 111 11 11 1 111 1 222 11 111 1 1 1 1 1 11 22222 11 1 111 1 222222 111 11 1 11 1 1 1 1 1 1 11 1 333 2 1 22 11 2222 1 2222 1111 1 1111 111 333333333 3333 22 11 1 1 1 1 11 1 11 1 1 11 1 1 2 11 11 1 11 1 111 1 1111 1 1 1 1 1 1 11 11 1 1 1
lowQualScore : 3 6 999 3 3 7 99999999 88 88 0 0 222222 777 0 777777777777777777 4 8 66 0 33 777 88888888 66 99999999 99 33 6 4444 3 6 1 6 0 0 555 6 999999 44444 1 6 555 5 7 2 5 5 8888888 5 7777 5 5 44 2 00 0 5 3333333333333333 888 5 77 888 222222222222222222222222222222 4 5 33333 77 3333 3 3 666666666666666 6 555 33 222222222 6 6 0 33 0 0 11 11 11 11 8 8 11 3333 8 99 8 0 8 444 222 8 00000 2222 2222 00000 8 0 0 8 6 8 33333 8 444 666666666666666666666 1 11 666666 8 11 22222222222 555 7777 333333333333333 111 99 11 8 111111 444444 55 6 999 6 99 6 777 6 6 99999999999999999999999999 111 1111111111111111 4444 88 8 0 44 33 0 2 3 0 2 0 0 3 2 0 99 0 0 1 0 55555555 0 0000 333 0 0 2 666 0 3 0 3 0 2 55555 0 0 33 66 0 0 0 777 3 1111 0 2 77 0 0 5 222 1111 2 33 33 0 666 0 333 2 33 777 0 0 3 0 3 0 3 3 3 0 2 2 0 22 3 99999 77 0 555 0 888888 2 8 666 2 2 33 2 2 0 3 33 0 3 9 0 0 0 3 0 0 33 3 0 000 0 0 9 33 3 33 8888 0 4444 4444 0 4444 777 999999999 3 4444 55 22 0 0 0 0 33 66 0 2 33 2 2 0 3 0 33 0 2 2 0 0 22 33 0 33 2 0 3 2 777 0 3 4444 0 2 0 0 0 5 0 33 33 0 7 3 2 0 8 6 6 888 8
lowQualScore : . . ... . . . ........ .. .. . . ...... ... . .................. . . .. . .. ... ........ .. ........ .. .. . .... . . . . . . ... . ...... ..... . . ... . . . . . ....... . .... . . .. . .. . . ................ ... . .. ... .............................. . . ..... .. .... . . ............... . ... .. ......... . . . .. . . .. .. .. .. . . .. .... . .. . . . ... ... . ..... .... .... ..... . . . . . . ..... . ... ..................... . .. ...... . .. ........... ... .... ............... ... .. .. . ...... ...... .. . ... . .. . ... . . .......................... ... ................ .... .. . . .. .. . . . . . . . . . . .. . . . . ........ . .... ... . . . ... . . . . . . ..... . . .. .. . . . ... . .... . . .. . . . ... .... . .. .. . ... . ... . .. ... . . . . . . . . . . . . . .. . ..... .. . ... . ...... . . ... . . .. . . . . .. . . . . . . . . . .. . . ... . . . .. . .. .... . .... .... . .... ... ......... . .... .. .. . . . . .. .. . . .. . . . . . .. . . . . . .. .. . .. . . . . ... . . .... . . . . . . . .. .. . . . . . . . . ... .
lowQualScore : 3 7 333 3 3 3 00000000 33 33 8 8 666666 000 6 444444444444444444 6 0 00 6 44 000 99999999 88 77777777 22 33 7 2222 3 7 7 7 7 7 888 7 222222 33333 5 7 555 5 3 0 7 1 4444444 7 4444 7 7 44 5 11 1 0 1111111111111111 888 0 55 888 777777777777777777777777777777 0 7 99999 99 6666 3 3 333333333333333 7 222 88 777777777 7 7 8 88 0 0 00 00 66 00 0 0 00 8888 0 00 0 8 0 000 222 0 22222 6666 2222 00000 0 8 8 0 0 0 00000 0 000 222222222222222222222 0 00 000000 0 00 22222222222 000 0000 888888888888888 888 00 22 0 000000 333333 88 7 000 7 22 7 555 7 7 77777777777777777777777777 777 7777777777777777 2222 88 0 0 22 88 0 5 2 0 5 0 0 2 5 0 22 0 0 0 8 00000000 0 8888 888 0 0 5 222 0 2 8 2 0 5 00000 0 0 22 55 0 0 0 000 2 2222 0 5 00 0 0 5 888 5555 5 88 88 0 888 0 000 5 88 555 8 0 2 0 2 0 2 2 2 0 5 5 0 55 2 55555 00 0 000 0 222222 5 8 222 5 5 88 5 5 0 2 88 0 2 2 0 0 0 2 0 0 88 2 0 000 0 0 8 88 2 88 8888 0 8888 8888 0 8888 555 555555555 5 5555 55 55 0 0 0 0 22 55 0 5 88 5 5 0 2 0 88 0 5 5 0 0 00 88 0 22 5 0 2 5 000 0 2 2222 0 5 0 0 0 5 0 88 88 0 0 3 0 8 0 7 7 333 0
consensus : AAATGCCAAA-ATCAGTN--AA-TGGACA-AAGCAGCACGC-----ACTTTAA--GTA--AGATACAGA-C---AATATATTTTTTAAAA---------ATAATCAG-CACGTAT-CACCTAAAAC-ATAACCCATTGTATTTAAGAAGGCATCTAAAAAA-AA-----TGA--GGGACTC-ATAAAT-GAAATT----GGG-TC-AATAATCA-GGGATGCGGTGCCG--GATCTAG-AG------GGGACAATACATTT-CC--CCTTTCACTAACC-TCA-A-GCTTTCAAACACTTATAAA-AAATGAATCTTTNT-TCA-AATGTT-GT-CATTTT-AGG-ATCTT-CGACCCC----------------CCCCC---CC-CCCC-CCC---CCCCAGC---------------------CAGT---TTCTCCG-TTC----TAC--ATNCAATTCAT-TGCAAA-AATAGGCTTTT---GT--TTTGA-ACAT-CAATCATTCTGAGT----TCTT-CAGTCTTGCT-TAATATC-TAAATTNATGA--AG-TATTTGTTA-CAA--AA--TAAATGA--ACA-TAGA-TAAAT--TCTAATTGTT-GAG--TTTAAA-AAATCTT-TGAC---CAACATTTGT-ATTAT-TGGCT--AACT--G-AAACTTTG-----CA-TTCTTTT-ACAA-T-CT--T--GCAGTC-A---TT--GAA--TATAGTGC-A-T--GTGTTTGT--GCTC-T--GTG-CA--GGTAA--TA-TTT-CCAAAAG---AGA----TCA--AA---A--AC--CCTGCAA--ATA--TGTAATTGTT-GT-A---CAAAG----T-TTTATA--AGT-ACTACA-AATT-GCCC-CT-AA---TGA-TTT-TA-T---GA---CAAA------------ATACTTTA---GATAT-T--GC-------G--CATA----GCAAAAAA-TATGTAAAAGTCGATCTGAT-CATAAT-TTANAT--CACCAT-ACTATGTTGTACA-TAATGATTT-C-GTTAATGCAACAGGCCTGATGCAT-GCCGTACACT-ATAAG-ACANATTTTAT-------CACATCCAGC-TC---TTGTACAAAATTCAGGTT-CATTGC-ACACG--ACA-TTTANTTTATTTT-CCACAGACATCAG-----AAGT-AT-GT-AATTAGGA-GTT-AT-CGTA--TACGTTACGTACC----TAG-ATCTTATACA-TATATAA-GTA-CCTCTCTC-CCTCCCTACCC--CCCCC--TTT-TTTTTTT-TAAA-CCAAAT--AACACTTTTTT--GAA---TCCCGTTCATCTC-AAACTT-ACAG-CAGAAACTGGCCCCGCAAAGCGACTT-AATGAAGGTGAATGG-GGGGAAATCTATGTCATT-G-T-TTCATCA-TTTACGTTTC-ATTTAGGTTGAAGG-GTGCG-----TGTGTGTGTGTGTGTGT-G-GGGGGGGGGGGGTGGTATGTGC--ATAAGACGTGCT-ATTCTCA--GTC-AGAAACTTATGCATG-TACTATTATCT-AA-TACACA-CTGT-CAC--AGTTAAA-TTACAC-NTCAT-TTGA-TTGATAAAAACAAAC--TTACATTTGAA--ACG---ATCGATCT-GTTT-T--CTCTCGTTGT--A-TA-TTGCAACTGC-A--ATGGGG---CTACAGCTAT--NA-G-GCACAGCA---AAACAATTA-TTTTTCTGTGAC-TTTTG-TT-CTG-AAA-TGGGGTA-ATCATTC-ACTCCC--TACTAGCCTTT-CTGGATA-CCGT--G-TGTCACTGTTACA-TTT-CCCCATGGC--GCAG-G-TTTCTC-ACAATTTTTCAAGCGAATTCAAAGCATTTCG--TTT-AAAACATCTGC-A-TCT-AACACCTCCACCATG-TGCA-CCATCGGTG-TTTTGAACGG-AG--GTCATGG--CGGACAA-TTCTCCCGCGATTTC-TGACTTG-GCTGTGCGAAGATGGTA-A-CTCCAC-CTCCCCTGACGAC-GTGGAAGG
Reference ( family-1037 ) : AAATGCCAAA-ATCAGTN--AA-TGGACA-AAGCAGCACGC-----ACTTTAA--GTA--AGATACAGA-C---AATATATTTTTTAAAA---------ATAATCAG-CACGTAT-CACCTAAAAC-ATAACCCATTGTATTTAAGAAGGCATCTAAAAAA-AA-----TGA--GGGACTC-ATAAAT-GAAATT----GGG-TC-AATAATCA-GGGATGCGGTGCCG--GATCTAG-AG------GGGACAATACATTT-CC--CCTTTCACTAACC-TCA-A-GCTTTCAAACACTTATAAA-AAATGAATCTTTNT-TCA-AATGTT-GT-CATTTT-AGG-ATCTT-CGACCCC----------------CCCCC---CC-CCCC-CCC---CCCCAGC---------------------CAGT---TTCTCCG-TTC----TAC--ATNCAATTCAT-TGCAAA-AATAGGCTTTT---GT--TTTGA-ACAT-CAATCATTCTGAGT----TCTT-CAGTCTTGCT-TAATATC-TAAATTNATGA--AG-TATTTGTTA-CAA--AA--TAAATGA--ACA-TAGA-TAAAT--TCTAATTGTT-GAG--TTTAAA-AAATCTT-TGAC---CAACATTTGT-ATTAT-TGGCT--AACT--G-AAACTTTG-----CA-TTCTTTT-ACAA-T-CT--T--GCAGTC-A---TT--GAA--TATAGTGC-A-T--GTGTTTGT--GCTCTT--GTG-CA--GGTAA--TA-TTT-CCAAAAG---AGA----TCA--AA---A--AC--CCTGCAA--ATA--TGTAATTGTT-GT-A---CAAAG----T-TTTATA--AGT-ACTACA-AATT-GCCC-CT-AA---TGA-TTT-TA-T---GA---CAAA------------ATACTTTA---GATAT-T--GC-------G--CATA----GCAAAAAA-TATGTAAAAGTCGATCTGAT-CATAAT-TTANAT--CACCAT-ACTATGTTGTACA-TAATGATTT-C-GTTAATGCAACAGGCCTGATGCAT-GCCGTACACT-ATAAG-ACANATTTTAT-------CACATCCAGC-TC---TTGTACAAAATTCAGGTT-CATTGC-ACACG--ACA-TTTANTTTATTTT-CCACAGACATCAG-----AAGT-AT-GT-AATTAGGA-GTT-AT-CGTA--TACGTTACGTACC----TAG-ATCTTATACA-TATATAA-GTA-CCTCTCTC-CCTCCCTACCC--CCCCC--TTT-TTTTTTT-TAAA-CCAAAT--AACACTTTTTT--GAA---TCCCGTTCATCTC-AAACTT-ACAG-CAGAAACTGGCCCCGCAAAGCGACTT-AATGAAGGTGAATGG-GGGGAAATCTATGTCATT-G-T-TTCATCA-TTTACGTTTC-ATTTAGGTTGAAGG-GTGCG-----TGTGTGTGTGTGTGTGT-G-GGGGGGGGGGGGTGGTATGTGC--ATAAGACGTGCT-ATTCTCA--GTC-AGAAACTTATGCATG-TACTATTATCT-AA-TACACA-CTGT-CAC--AGTTAAA-TTACAC-NTCAT-TTGA-TTGATAAAAACAAAC--TTACATTTGAA--ACG---ATCGATCT-GTTT-T--CTCTCGTTGT--A-TA-TTGCAACTGC-A--ATGGGG---CTACAGCTAT--NA-G-GCACAGCA---AAACAATTA-TTTTTCTGTGAC-TTTTG-TT-CTG-AAA-TGGGGTA-ATCATTC-ACTCCC--TACTAGCCTTT-CTGGATA-CCGT--G-TGTCACTGTTACA-TTT-CCCCATGGC--GCAG-G-TTTCTC-ACAATTTTTCAAGCGAATTCAAAGCATTTCG--TTT-AAAACATCTGC-A-TCT-AACACCTCCACCATG-TGCA-CCATCGGTG-TTTTGAACGG-AG--GTCATGG--CGGACAA-TTCTCCCGCGATTTC-TGACTTG-GCTGTGCGAAGATGGTA-A-CTCCAC-CTCCCCTGACGAC-GTGGAAGG
gi|1 : ATACAG--C---AATATATCTTTTAAAA---------ATA----G-CACATAT-TACCTAAAAC--TAACCC---GTGTT---------ATCTAAATGA---------GA--GGGGCT--ATAGAT-TAAATT----GGGGCC-AATAATCA-GTGATGCAGTGCTG---ATGTAA-AG------GGGACAATAAATCT-AGAACTTGTCACCAACC-TCA-AAGCTC---AACACTTATAAA-GAATGA-----TAT-TCA-AATGTT-GT-CATTT--ATG-ATCTT-CGACACC----------------CCTCC---CC-CCC------------AGTG--------------------TAGT---TTTTCCG-TTC----TAC--ATT---TTTAT-TGCAAA-AATAGGC--TT---GT--T---A-AC---CAATCATTCTGAAT------CT-CAGTC-TGCTGTAATATC-TAAAT
gi|15 : actcttccacgctccgccctgatggcataacagtcatcacgtgttacaagactccgtcaacttacatgtaaacaacatgggtgcatgtcatgcttgcaccgtacatattgtaaatcgcctcgttttgacgacgaattgttcacagaaaagttgtcaaggatctgacacagcttgcagagaaagttacgttcactaaaatttatgagtcaataacgcagaacagcacttgtaaacgggtgctactcatagtctcgatgctttcgtaacatggatgcatgtattatgtgtacagatatggctgcagaaaaactgtcccgatatttttacagagagctacatgctgcagctagctgcatcagatggtaaactacgggaaattaaacgagtttaattttttgtgaggaatttaaaaatgttgttttagttaaaaaacttaataaaatagccctaaaacgtctgcgtttacccgttcccattttataagatgttttcatctgctgtctgcatatttatattgtatttttcagcctaactaatagccacttccacaaatattgaactacattgggatatattaaaaattggttgcttaaagatttatatagtggcattgcatatgtatcccccttttttccaggtctatctccctaatccaatatatatgctaataaaatacacggacggttcgggtggtaacacccgtcacaggcaatcacagaagggaaaaaaactcgtaacgtaattaattatagtaatagttcatttatttgtaaatgccatattgaacacagtaaacttatattttcagccagtttaaagataacatccatgggtcagcaatggaatggaacacacaaacaacatacaagtcaataaggcagataatctttatatcaaagttgatcaatgcatagtgcgattgaaattaaaattcttgtattccaaataattgtattgccctgatcatgttgagaataatgcaattcttttgtcatgtcctccttcttttacgtacttgggaaacttgcacaatcaaatctccaagcaaagtacatgtttgcaaggttaattgtaaaatatatcaaaacacgccttggtattcttttctattgtaaagagaattgttttctgctaaaaaggggaagcttgtgatactgggttgatctacataactggagttatgatcgattcgtatgctctgttgatgacgagtgtgatctctttagctaaaaaattctgctgtaccaagtatatccaaatgaatcgtaaaaaaaaaaccgacaagaatatttttttaatatgtcaaatgccaaatcaT-AGG----TC-CAACCCC----------------CCCCC---CC-CCCC-CCC---CCCCCTC------------------------T---CTCTCTG-TT-----TAT--ATGCGATTC
gi|2 : catgtttttcataataaactcAAATGCCAAA-ATCAGTT--AA-TGGACA-AAGCAGCAC-------ATTTTAACAGTA--AGATACAAA-C---AAC---TTTTTTTACA---------ATAATCAGTCATTTAT-CAGC--AAACTATAACC-ATTGTATTTAAGAAGGCA-ATAAAAAA-AAACCAATGA--GGGACTC-ATAAAT-GAAATT----GGA-TC-AATTATCAAGGGATGCGGTGGCG--GATCTAG-AG------GG-ACAATACATTT-TC--CCCTTCACTA-CC-TCA---GCTTTCAAACA-TTATAAA-A--TGAATCTTTCT-TCT---TGTT-GTTCATTTT-AGGCATCTT-CGACCCC----------------CCCCCCCC----CCC-CCC---CCCCA------------------------AGT---TT-TCCGTTTT----TAT--ATACAATTCATCTGCAAAGAATAGGCTTTT---GT--TTTGA-ACAT-CAAT--TTCTGAGT----TCTTCCAGTCTTGCTCTAATATC-TAAATTTATGA--AG-TATTTGTTA-CAA--AA--TAAATGA--ACA-TAAA-TAAAT--TCTAATTGTT-GAG--TTTAAA-AAATCTTCTGAC---CAACATTTGT-ACTAT-TGGCT--AACT--G-AAACTTTG-----CA-TTCTTTT-ACAA-T-CT--T--GCAGTC-A---TT--GAA--TATAGTGC-ATT--GTGTTTGT--GCTC-T--G-G-CA--GGTAA--TA-TTT-CCAAAAG---AGA----TCA--AA---A--AC--CCTGCAA--ATA--TGTAATTGTT-GT-A----AAAG----T-TTTATA--AGT-ACTACA-AATT-GCCC-CT-AA---TGA-TTT-TA-T---GA---CATA------------ATACTTTA---GATAC-T--GC-------G--CATA----GCAAAAAA-TATGTAAAAGTCGATCTGAT-CATAAT-TT-TAT--CACCAT-ACTATGTTGTACA-TAATGATTT-C-GTT-ATGCATCAGGCCTGATGCAT-GCCATACACT-ATAAG-ACAAATTTTAT-------CACATCCAGC-TC---TTGTACAAAATTCAGATT-CATTGC-ACACGCCACA-TTTAGTTTATTTT-CCACAGACATCAG-----AAGT-AT-GT-AATTAGGAGGTT-ATCCGTA--TACGTTACGTACC----TAG-ATCTTATACA-TATATAA-GTA-CCTCTCTC-TCTCTCTACCC--CCCCCCTTTT-TTTTTTT-TAAA-CCAAAT--AACACTTTTTT--GAA---TCCCGTTCATCTCAAAACTT-ACAGCCAGAAAC-GGCCCCGC-AAGCGACTT-AATGAAGGTGAATGG-GGGGAAATCTATGTCATT-GTT-TTCATCA-TTTACGTTTC-ATTTAGGTTGAAGG-GTGCG-----TGTGTGTGTGTGTGTGTGG-GGGGGGGGGGGGTGGTATGTGC--ATAAGAC--GCTCATTCTCA--GTC-AGAAACTTATGCATG-TACTATTATCT-AA-TACACA-CTGT-CAC--AGTTAAATTTACA--TTCAT-TTGA-TTGAATAAAACAAAC--TTACATTTGAA--ACG---ATCGATCT-GTTT-T--CTCTCGTTGT--A-TA-TTGCAACTGC-A--ATGGGG---CTACAGCTATTACA-GCGCACAGCA---AAACAATTA-TTTTTCTGTGAC-TTTTG-TT-CTG-AAA-TGGGGTA-ATCATTC-ACTCCC--TACTAGCCTTT-CTGGATA-CCGT--G-TGTCACTGTTACA-TTTCCCCCATGGC--GCAG-G-TTTCTC-ACAATTTTTCAAGCGAATTCAAAGCATTTCG--TTT-AAAACATCTGC-ACTCT-AACACCTCCACCATG-TGCAGCCATCGGTG-TTTTGAACGG-AG--GTCATGG--CGGACAACTTCTCCCGCGATTTCGTGATT---GCGTTGCGGAGATGGTACA-CTCCCA-CTCCCCTGACGACTATGGAAGGtcggtaatagtgtacagttctattatgaacattagagaacattttcaaaatcaaatattaa
gi|23 : AAAG----T-TTTATA--AGT-ACTAAA-AATT-GCCC-CTAAA---CGA-TTT-TA-T---GA---AAAA------------ATACTTTA---GAT---------------------------------A-TATGTAAAAGTCGATCT-AT-Ct
gi|26 : TTG-GCTGTGCGAAGATGGTA-A-CTCCAC-CTTCCCTGACGAC-GTGGAAG
gi|27 : aTA-A-CTCCAC-CTCCCCTGACGAC-GTGGAAGcat
gi|28 : TTG-GCTGTGCGAAGATGGTA-A-CTCCAC-CTctg
gi|3 : TTATAAATAAATGAAT-TATGTATCATAATGT------ACATT-A---------CGGCCCC----------------CCCCC---CC-CCCC-CCC---CCCCt
gi|3 : actcttccacgctccgccactggatggcaacgtcacacgcgtgtttacagactcgtcaacttgcatgtaaacaacatggcgcgcgatgtccgctcttgcaccgggtatcatgttaagtcgccttcgtttgaaccacgaaattttacagaaaagttgtccaaaggatctgacacccttctgagaaagttacgttcacaaaatttcactgagtaaaatcgcagaaacacaattgtaaaacgtgtgcaactagatgctttcgtagcatgaattgcattgttattacagtggcagaaatggtgtagaacaaattgtcccaatattttaacagagagctactgttctgaggctagtgcacagatgggtaaacacggtgcaattattgagtttaaattgttttgttaaggaatttaaaatggttgtttagttaaaaactgaataaaaaataggctatatttgcgcgttttaccgttcttttaatttttataaatgtttcatctgcttttaactaaaatcaccatcttccaaatgtgaaactatcaattgtttaagattttaaggacaagtatcccccttttccccccaggctaccctaatccaatatatttctataaatacacccgtccacacaaatccaacggatggggggAAATGCCAAA-ATCATTA--AACTCGACA-AAACAGCATGC-----ACATTAA--GTA--AG-TACAAAAC---AAT-T-TTTTTTAAAC---------ATA-TC---CATATATGCACC----AC-ATAACCCATAGTATT--AGA--GCAT--AAAAAACAA-----TGA--GGGA-TC-ATAAAT-GAAATT----GGG-TC-AATAGCAA-GGGGAGCACTGCTG--GATCTAG-AG------GGGACAATACATTT-CC--CCTT-CACTCAC--TCA---GCTT-CAAACA-TTATAAA-AA-TGAATCTTCTT-T-----TGTT-GT-CATTTT-AGG-ATC---------------------------CCCC---CC-CCCC-CCC---CCCAAG-----------------------------TTTTCCG-TTTATA-TACAAATACAATTCAT-TGCAAA-AATAGGC-TTT---G----TTGA-AC---C-ATCATTCTGAGTCTCATCTT--AGTCTTGCTCTAATATC-acacgtattaaaaatacagtagccaattaaagatagcattcctgtggggtcaatggaactgaatctaactcaaagacaagatacattaagtcatacggcaaagaatatttatcatcaaaattgatcaatgccacaagtgttgaaatataaaactttttgaattccaaataatgttctgctgcctcatcagtgttaaaataattggcaaattcttttgtcatgtccctccttctttacatacttgggaacttgcaacagatacaaacttccaacaaagtacatgttgcagttcaattggtaatatcaaatcagccttcataagtgggtatttttttccattgtaagtagaatattgtttttggtacaaagggatagctttgttgatagggttgatctaataactggagttgatgatgattcagtctgaggtatgctctgttgatgaagagtgtggtttttgactaaaaaatgctgctgtaccaagtattctcaaatgaattgtaaacaaagacagaatattttttaatactgtgcaaaatgccaaaatcattaaactcgacaaaacagcatgcacattaagtaagtacaaaacaattttttttaaacatatccatatatgcaccacataacccatagtattagagcataaaaaacaatgagggatcataaatgaaattgggtcaatagcaaggggagcactgctggatctagaggggacaatacatttccccttcactcactcagcttcaaacattataaaaatgaatcttcttttgttgtcattttaggatcccccccccccccccccaagttttccgtttatatacaaatacaattcattgcaaaaataggctttgttgaaccatcattctgagtctcatcttagtcttgctctaatatc
gi|4 : actcttccacgctccgccactggatggcaacgtcacacgcgtgtttacagactcgtcaacttgcatgtaaacaacatggcgcgcgatgtccgctcttgcaccgggtatcatgttaagtcgccttcgtttgaaccacgaaattttacagaaaagttgtccaaaggatctgacacccttctgagaaagttacgttcacaaaatttcactgagtaaaatcgcagaaacacaattgtaaaacgtgtgcaactagatgctttcgtagcatgaattgcattgttattacagtggcagaaatggtgtagaacaaattgtcccaatattttaacagagagctactgttctgaggctagtgcacagatgggtaaacacggtgcaattattgagtttaaattgttttgttaaggaatttaaaatggttgtttagttaaaaactgaataaaaaataggctatatttgcgcgttttaccgttcttttaatttttataaatgtttcatctgcttttaactaaaatcaccatcttccaaatgtgaaactatcaattgtttaagattttaaggacaagtatcccccttttccccccaggctaccctaatccaatatatttctataaatacacccgtccacacaaatccaacggatggggggggggggggggggggggggggggccgtaatgtacattatgatacataattcatttatttataaacacgtattaaaaatacagtagccaattaaagatagcattcctgtggggtcaatggaactgaatctaactcaaagacaagatacattaagtcatacggcaaagaatatttatcatcaaaattgatcaatgccacaagtgttgaaatataaaactttttgaattccaaataatgttctgctgcctcatcagtgttaaaataattggcaaattcttttgtcatgtccctccttctttacatacttgggaacttgcaacagatacaaacttccaacaaagtacatgttgcagttcaattggtaatatcaaatcagccttcataagtgggtatttttttccattgtaagtagaatattgtttttggtacaaagggatagctttgttgatagggttgatctaataactggagttgatgatgattcagtctgaggtatgctctgttgatgaagagtgtggtttttgactaaaaaatgctgctgtaccaagtattctcaaatgaattgtaaacaaagacagaatattttttaatactgtgcaGCATTTGAAAAA-AA-----TGA--GGGACTC-ATAAAT-GAAATT----GGA-TC-AATA-TCA-GGGATGCGGTGCTG--GATCTAG-AG------GGGACAATACATTTTCC--CCTCTCACTAACC-TCA---GCTTTCAA-CATTAGTAAA-AATCGAATCTTT-T-TC----TGTTTGT-CATTT--AGGCATCTTTCGACCCCCCCCCCCCCCCCCCCCCCCCC---CC-CCCC-CCC---CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCGT---TTCCCCC-CCCCATTTGT--ATACAATTCATCTGCAAAGAATAG--CTTT---GT--TTTGA-ACAT-CAAT--TTCTGAGT----TCTTCCAGTCTTGCT-TAATATC-TAAATTGATGA--AG-TATTTGTTA-CAA--AA--TAAATGA--ACA-TAAA-TAAAT--TCTAATTGTT-GAGTTTTTAAA-AAATCTT-TGAC---CAACATTTGT-ATCGTATGGCT--AACT--GCAAACTTTG-----CA-TTC-TTT-ACAA-T-CTTCT--GCAGTCAA---TT--GAAATTATAGTGC-A-T--GTGTTTGT--GCTCGT--G-G-CA--GGTAA---A-TTGACCAAAAAGC-AGA----TCA--AA---G--AC--CCTGCAA--ATAG-TGTAA-TGTT-GT-A---CAAAG----TCTTTATAC-AGTAACTACA-AATT-GCCC-CT-AAC--TGACTTT-TACT---G-----AAC------------ATACTTTA---GATATAT--GC-------G--CATA----GCAAAAAA--ATGTAAAAGTCGATCTGATCCATAAT-TAATAT--CACCATAACTATGTTGTACATTAATGATTTGC-GTTAGTGCAACAGGCCTGATGCATCGCCATACACTAATAAG-ACAATTTCTAT-------CACATCCAGC-TC---TTGTACAAAATTCA-GTT-CATTGCAACAC---CCACTTTACTTTA-TTT-CCACAGACATCAG-----AAGT-ATCGTCAATTAGGA-GTTAAT-CGTA--TACGTTACGTACC----TAGAATCTTATACA-TATATAA-GTA-CCTCTCTCTCCTTCTTACCCCTCCCCC--TTTGTTTTTTT-TAAACCCAAAT---ACACTTTTTTGGGAA---TCCCGTTCATCTC-AAACTT-AC-G-CAGAAACTGGCCCCGCAAAGCGACTGAAATGAA--TGAATGGTGGGGAAATCTATGTCATTCG-TGTTCATCATTTTACGTTGCAATTTAGGTTGAAGGTGTGCG-----TGTTTGTGT-TGTGTGT-GTGGGGGGGGGGGGTGGTATGTGCATATAGGACGT-CT-A-TCTCA--GTCAAGAAACTTATGCATG-TACTATTATCT-AATTACACAGCTGT-CAC--AGTTAAA-TTACAT-TTCATCTTGATTTGATAAAAACAAACTATCACATTTGAA--ACGGTCATCGATCTCGTTTCT--CTCTCGTTGT--AGTA-TTGCAACTGCAA--ATGGGGCGCCTACAGCTAT--TACA-GCACAGC----AAACAATTA--TTTTCTGTGACTTTTTG-TTCCTGAAAA-TGGGGTATATCA-TC-ACTCCCTTTACTAGCCTTTCCTGGATA-CCGTTCG-TGTCA-TGTTACAGTTT-CCCCATGGC--GCAGCGTTTTCTCAACAATTTTCAAAGCGAATTCAAAGCATTTCAGTTTT-AAAACATCTGC-A--CT-AACACCTCCACCATGTTGCA-CCATCGGTG-TTTTGAACGG-AGGCGTCATGGGCCGGACAA-TTCTCCCGCGACTTC-TGACTTGCGTTGCG-GAAGATGGTA-ACCTCCTCACTCCCCTGACGAC-ATGGAGG
gi|5 : ATACAG--C---AATATATCTTTTAAAA---------ATA----G-CACATAT-TACCTAAAAC--TAACCC---GTGTT---------ATCTAAATGA---------GA--GGGGCT--ATAGAT-TAAATT----GGGGCC-AATAATCA-GTGATGCAGTGCTG---ATGTAA-AG------GGGACAATAAATCT-AGAACTTGTCACCAACC-TCA-AAGCTC---AACACTTATAAA-GAATGA-----TAT-TCA-AATGTT-GT-CATTT--ATG-ATCTT-CGACACC----------------CCTCC---CC-CCC------------AGTG--------------------TAGT---TTTTCCG-TTC----TAC--ATT---TTTAT-TGCAAA-AATAGGCTT-----GT--T---A-AC---CAATCATTCTGAAT----C--T-CAGTCT-GCTGTAATATC-TAAATT--TGA--AGCTATTTGTTA-CAAGAAA--TAA-TGA--ACA-TAGA-TACAT--T---ATTATT-GATC-TTTCTA-AAATCTT-TGAC---CAACA---GT-GTGAT-TGGCT--A-CT--G-AAACGATT-----CAGTTCTT-----AACT-CT--T--GCAGTC-A---TT------------------T--GTGTGTAT--GCT--T--GTG-CA--GGTAA--TA-------GAATG---ATA----TC----------------CTGCAA--ATACATGTA-----T-GTGA---TAAAG----C-TT------AGT-ACCATA-A-TT-GACC--T-AAAGATGA-TTT-TAGT---GA---CAAAAATGTTTTAGATATGCGTTAAGTGAAAT-T--GTTTTTATAGATCATGAAGGGCAAAAAAATATATGAAGTCCGATCTGAT-CATAATCTTAAATTACACCAC-A--ATGT-GTATA-TAAT--TTT-CTGTTAATGCAATAAGTCTGAT---T-GC-GTTCACA-GTAAG-ACACATTGTATACACATGCACATCCAGCCTCAGATTGTACAAGATTTAGGTTGCATAAC-A-ACG--ACA-TT-ATTTTATATCACCA-AGGCACCAACCAGAAAGTGAT-GT-CAT-AGGA-GGT-AT-CGTAAATACGTT---TACTAGAGTAG-AT--TATAAAACACATAATGTAACC-----C-CCTCCCCAGCC--CTCCC--TTT-TTTTTC----AA-CCAAAT--CA-ATTTTTTT--GGACCATCTCGGTCATCTC-AAACTTTACAG-CAGAAACTGGCATGGCAAAGCGACGT-AATGAAGGTGAATGG-TGGTAA--TTGTTTCATT-T-T-TAAAATA-CTTACTTTTC-ATGTGGGT----GG-GTGCG------GTGTGT-------------CGGGAGGGTGGGTGGTAT-TGC--ATAAGACGTGCT-ATTCTCAAGATT-AGAA--CTAAGCAGGTTACTATTAAGTAAA-TAC-CA-CTGT-CAC--AG-TAAA-TTACA--ATCACATTGA-TTGAT-AAAACAAAC--TTACATTTGAATGACG---TGTGATCT-GTTT-TA-TTCTCATTGA--A-TA-TTGTAACTGC-AGCACGGGG---CCCCGGCAAT--GG-G-GCTCAGCAGT-AAGCAATTA--TTTTCTGTGA---TTTGCTT-CTG-CAATTGGGGTA-ATC-TTC-A--CCC--TA-TA-TCTTT-C-GGGTACCCGT--GTTGTCACTGCTA----TT-CCCCCT-GCTGGCAG-G---TCTT-ACAA--GTTCAAGCGAATCCACA--ATCTCG---TT-AAGACATCTGC-A-TCT-AACA--TCCACCATG-TGCA-CAATAGGTGTTTTTG--CGGAAG--GTCATGG--CGGACAA-TTTTCCCGCGATTt
gi|6 : ggttgatctacataactggagttatgatcgattcgtatgctctgttgatgacgagtgtgatctctttagctaaaaaattctgctgtaccaagtatatccaaatgaatcgtaaaaaaaaaaccgacaagaatatttttttaatatgtcaaatgccaaatcaA--AA--TAAATGA--ACA-TAGA-TAAAT--TCCA-TTGTTTGAG--TTTAAA-AATCTTT-TGAC---CAACATT-GT-AT-AT---GCT--A-CT--G-AAAACTTG-----CA-TTCTTTT-ACAA-TTCT--T--GCA-TC-A---TT--GA-----CAGT-----------TTTGT--GCTCTT--GTG-CA--GGTAA--TA-TTT-C-AACAG---AGA----TCA--CA---A--AC--CCTGCAA---TA--TGTAATTGTT-GT-C---CAAAG----T-TTTATA--AGT-ACTACA------------T-AA---T---TTT-TAAT---GA-----AA------------ATACTTTA---GATAT----GC----------CATA----GCCAAAAA-TATGTAAAAGTCGATCTGAT-CATAAT-TTAAAT--CACCAT-ACTATGTTGTACA-ATATGATTT-C-TTTAATGCTACAGGCCTGATGCAT-GC--TACACT-AAAAGCCCACATTTTAT--------ACATCCAGC-TC----TGTACAAAATTCAGA-T-CATTAC-ACACG--ACA-TTTA-TTTATTTT-CCACAGACATCAG-----AAGT-AT-G--AA-TAGGA-GTT-AT-CGT---TACGACACGTAGC----TAG-ATCTTATACA--ATATAA-GTA-CC-CTCT---------------CCCCC--TTT-TTTTTTTAAAAA-CCAAATACAACATTTTTTG--GAA---TCCCCCGCATCTC-AAAC-T-ACAG-CAG-AACTGGCCCCGCAAAGCGACTT-AATGAAGGT-AATGT-GGGGAAA-CTAAGTC-TT-G---TTCATTA--TTACGTTTC-ATTTAGGTT--AAG-GTGCGTGTGTTGTGTGTGTGTGTGTGT-G-GGGGGGGGGGGGT--TATGTGC--ATAAGACGTGCT-ATTCTCA--GTC-AGAAACTTATGCA-G-TACTAATTTCT-AA-TACACA-CTGTCCACAAAGTTAAA-TTACACTATCAT-TTGA-TTGATAAAAACAAACG-TTACA-TTGAA--ACGT--GTCGATCT-GTTT-TTCCTCTCGCTTTAAA-TACTTGCAACTGC-A--ATGGGG---CTACAGCT------------CAGCACGTAAACAATTATTTTTTCTGTGAC-TTTTG-TT-CTG-AAA-TGGGGT---TAATTCAACTCCT--CCCTAGCCTTT-CTGGATA-CCGT--G-TGTAGCTGTTACA-TTTACCCCA--GC--GCAG-G-TTT-TC-CCAATTTTTCAAGCGAATTCAAAGCATTTCG--TTTAAAAACA-CTGCAA-TCTAAACACCTCCACCATG-TGCA-CCATCGGTG-TTTTG-ACGG-AG--GTCATGG--CGGAGAA-TTCTCCCGCGA-TTC-TGA-TTG-GCTGTGCGAAGATGGTA-A-CTCC-C-CTCCCCTGACGAC-GTGGGAAG
gi|7 : acATGCCACACAT-AGTGGCAA-TGGACACAAGT-GCATGCTCAACACTATAA--GTATTAGAT---GA-CTTAAATTT-TTTTTTAACATCTTGTCATGTAAT-AT-TATGTAC-CAC--AACCC-CTAACCCATTGTATTTA-GAAG-CACCTAACAAA-AA-----TGAAGGGGACTCGATAAATAGAAATTCGACGGG-TTTAATGATCA-GGGATGCATTTTCGTGGATCTATTAGACTTCTGGGACAATACATTC-CC--CAGTTCACTAACCCTCTTA-TCCTTCAA-CATTTATTAA-AAATGGATCTTCCT-TCA---T-TT-GT-CATTTTTAGG-ATTTT-TGACCCC----------------CCCCC---CCACCCCACCCCTGCCCCAAC---------------------C-GCCCATTCCCCC-CCC----TCC--CTCC----CAG-TG-----AATAG--TTTTCCCGTTCTTTGATATATATAATC-------------TCCT-CAA-ATTGC--AAAAATCTTAAATTAATGAACAG-TATTTGTTACCAA--AAACTAAA-GACCACATTAGATTAAGTGGTTTTATTGTT-GAG--TTTAAAGGAATC-T-TGACCATCAACATAGGTAATTCC-TTTCTTCAACTTGA-AAACTTTGTCGATTA-CTCTCTTAATAAGT-CA--TCCGCAGTC-AATGTTTAGAAC-TAT-GTGCAA-TAGATGTATGCTAGCTCCTGGGTGTCAGGGGTAAATCACTTT-TCAAAAACGCAGATTCCTCATTAATTTACCACAACCTGCAATGATA--TGTACTTGTTGGT-AACTCCAAGCTTTT-TTTATAGGAGT-ACAACACAATTAGCCCACT-AAAC-AGA-TTTCTA-TCCGGAAACCAAA------------ATACTTTA---GTTAT-TTAG--------G--TATA----GTAAAcgtg
blockSeqs : C C GGC C C A TGCTCAAC . TT ACTTA ATA TCTTGTCATGTAATAT T G TA TA ATT TAAGAAGG TT AAACCAA AG CG A CGAC G T A A TGG T ACTTCT AGAA T C AA T A T T A ATCTTTC A ATAA T T TT G CA T CCCCCCCCCCCCCCCC CCC A CA CTG CCCCCCCCCCCCCCCCCCCCCCCCCGT C T CCATT AA GCGA C G TTTTCCCGTTCTT T ATA CA CTCATCTT C T G AC C C GA AC AT CC T T GG CTAA T TT G . CAT TTT A CGTAT TCAA TGA TCGAT G A C T TCT A ATG TAGAACTATGTGCAATAG T TA CTGGGT T GG ATCACTTTTC CGC TTCC ATTAATTTACCACAA TGA CA AT G AACTC CTTTT GG A CAA A AC A AGA C C GTGACAAAAATGTTTTAGAT AGT TGTTTTTATAGAT AAGG AT C C AT TA A C T T G G T A G C CA A C A ACACATGC C AGAT GGT G A C G C T C T A C CCAGA G C TC TT . A . AAA A AGAG A C AC T A T CTC TCTT C CT . G TAA C ACA C GG CCA . T T A . A T A A G G T AT A CGTG TT A TGA T TGTGTT G G GT G G AT G G . T AG A A T T A T A G C AA T . CTA C T A TA T TG GTCA C TTC AAA C AGC CGC ATTACA A ACGT TT CT C C A T AT AT A C TT C G C T C TC T C C G A TG TG C TT C A T G GTT A T AAT A C T . T A A GC GC . C . C C . C TCA .
blockSeqs : . . A . . . TGC . . AAC TT ATAATCAGT A . A A ATA TAGAAG TC CAA . C . . . . G . G . . TCC T . TA T A C . T ATCTTCT . AAA . . T G CA . . . . C . ACCGCCCA T . TATA . ACAA C G GCTTTTGTTT . AT CA TCTTC C . A . . . . . AT . . . . TTTA . C . . . TAG . GATT AA GC . . . G . TCC . . GAAATTATAGTGCAT G . TTGT . . ATTGACC GC . AAAGAC A G CT . GAT TC C . AA . C . AC . . TCCGGAAACCAAA . ATGCG . T . . AA . . C T . G . . A G . G . . C C . T GT . . C G . T T T . C . . . T T . . . A A . . C T . . . CC CCCC G . . . TT . C C . . . T . A . A T A . G G . A A TT C . T . T G . G G G . G G . T . . A G . . . A . . . T . TT A . A G T . TG . CT AG . AA . ATGGG T AGT . C . . . . A A . C . C G . T . . . C C . . T . . T C . T G T . T AT . C . . . . . . . . T . . . . . AC .
blockSeqs : AC T ATATC A . . C ATT AGAG CC AA . C . . . . A . G . . TC C . . T A T . A ATCTTCC . T . . T G A . . . . C . GTGTAGT C . T . ACAA . . CTTTGTTT . AT C TCTTC G . . . . . . . T . . . . CCA . . . . . TT . TCCT A G . . . . . T . . GACAGT T . GTG . . TATTTC . . ACAAAC A . A . AC T . . AA . C . C . . TGAAAAA . TTAGG . T . . AA . . . . . . . . A . . . . . C . . . GA . . . . . . . . . . . . . . T . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . T A . . . . . . G . . . . . . . . . . . G . . . . . . . . . . . . . . . . A . . . . . . T . TA A . A . . . . . . . . . . . T . . . . . . . . . . . . . . . . . . . . . . . . . A . . . . . . . . . . . . . . AC .
blockSeqs : C . ATAG G . . . . . A AA . C . . . . A . G . . CC G . . . . . . A ATTATG . A . . T G A . . . . C . TCT T . C . ACAA . . GCTTTGT . . . TCCT . . . . A . . . . A . . . . . . . AT A G . . . . . T . . T A . TGT . . TA . . . . . . . CC C . . A . . . . . . CTGAAC . GC . . . . . . AC .
blockSeqs : T . . . . . . . . . . . . CC T . . . . . . . ATCTTT . . . . T T A . . . . C . AGT C . C . CC . . GCTTGTT . . . CT . . T . . . . . . . . . ATGAAA . . . . . C
blockSeqs : . . TA . . . . . G . . . . . C . G . . . . T
blockSeqs : . . . . . . . . .
blockSeqCons : AC**** *** ** ** ATT AGAG**** AA****** C* G** CC*** *** ATCTTTN AA** T* C* NCCGT************************* ACAA TCTT***** A*** T**** ACGT***************** NTGT** CATTCC***** AC**** C* NTGAAA******************** TGGN************
originalCons : AAATGCCAAA-ATCAGTN--AA-TGGACA-AAGCAGCACGC-----ACTTTAA--GTA--AGATACAGA-C---AATATATTTTTTAAAA---------ATAATCAG-CACGTAT-CACCTAAAAC-ATAACCCATTGTATTTAAGAAGGCATCTAAAAAA-AA-----TGA--GGGACTC-ATAAAT-GAAATT----GGG-TC-AATAATCA-GGGATGCGGTGCCG--GATCTAG-AG------GGGACAATACATTT-CC--CCTTTCACTAACC-TCA-A-GCTTTCAAACACTTATAAA-AAATGAATCTTTNT-TCA-AATGTT-GT-CATTTT-AGG-ATCTT-CGACCCC----------------CCCCC---CC-CCCC-CCC---CCCCAGC---------------------CAGT---TTCTCCG-TTC----TAC--ATNCAATTCAT-TGCAAA-AATAGGCTTTT---GT--TTTGA-ACAT-CAATCATTCTGAGT----TCTT-CAGTCTTGCT-TAATATC-TAAATTNATGA--AG-TATTTGTTA-CAA--AA--TAAATGA--ACA-TAGA-TAAAT--TCTAATTGTT-GAG--TTTAAA-AAATCTT-TGAC---CAACATTTGT-ATTAT-TGGCT--AACT--G-AAACTTTG-----CA-TTCTTTT-ACAA-T-CT--T--GCAGTC-A---TT--GAA--TATAGTGC-A-T--GTGTTTGT--GCTC-T--GTG-CA--GGTAA--TA-TTT-CCAAAAG---AGA----TCA--AA---A--AC--CCTGCAA--ATA--TGTAATTGTT-GT-A---CAAAG----T-TTTATA--AGT-ACTACA-AATT-GCCC-CT-AA---TGA-TTT-TA-T---GA---CAAA------------ATACTTTA---GATAT-T--GC-------G--CATA----GCAAAAAA-TATGTAAAAGTCGATCTGAT-CATAAT-TTANAT--CACCAT-ACTATGTTGTACA-TAATGATTT-C-GTTAATGCAACAGGCCTGATGCAT-GCCGTACACT-ATAAG-ACANATTTTAT-------CACATCCAGC-TC---TTGTACAAAATTCAGGTT-CATTGC-ACACG--ACA-TTTANTTTATTTT-CCACAGACATCAG-----AAGT-AT-GT-AATTAGGA-GTT-AT-CGTA--TACGTTACGTACC----TAG-ATCTTATACA-TATATAA-GTA-CCTCTCTC-CCTCCCTACCC--CCCCC--TTT-TTTTTTT-TAAA-CCAAAT--AACACTTTTTT--GAA---TCCCGTTCATCTC-AAACTT-ACAG-CAGAAACTGGCCCCGCAAAGCGACTT-AATGAAGGTGAATGG-GGGGAAATCTATGTCATT-G-T-TTCATCA-TTTACGTTTC-ATTTAGGTTGAAGG-GTGCG-----TGTGTGTGTGTGTGTGT-G-GGGGGGGGGGGGTGGTATGTGC--ATAAGACGTGCT-ATTCTCA--GTC-AGAAACTTATGCATG-TACTATTATCT-AA-TACACA-CTGT-CAC--AGTTAAA-TTACAC-NTCAT-TTGA-TTGATAAAAACAAAC--TTACATTTGAA--ACG---ATCGATCT-GTTT-T--CTCTCGTTGT--A-TA-TTGCAACTGC-A--ATGGGG---CTACAGCTAT--NA-G-GCACAGCA---AAACAATTA-TTTTTCTGTGAC-TTTTG-TT-CTG-AAA-TGGGGTA-ATCATTC-ACTCCC--TACTAGCCTTT-CTGGATA-CCGT--G-TGTCACTGTTACA-TTT-CCCCATGGC--GCAG-G-TTTCTC-ACAATTTTTCAAGCGAATTCAAAGCATTTCG--TTT-AAAACATCTGC-A-TCT-AACACCTCCACCATG-TGCA-CCATCGGTG-TTTTGAACGG-AG--GTCATGG--CGGACAA-TTCTCCCGCGATTTC-TGACTTG-GCTGTGCGAAGATGGTA-A-CTCCAC-CTCCCCTGACGAC-GTGGAAGG
finalCons : AAATGCCAAA-ATCAGTN--AA-TGGACA-AAGCAGCACGC-----ACTTTAA--GTA--AGATACAGAC----AAT---TTTTTTAAAA---------ATAATCAG-CACGTAT-CACC--AAAC--TAACCCATTGTATTAGAG----CATCTAAAAAAAA------TGA--GGGACTC-ATAAAT-GAAATT----GGG-TC-AATAATCA-GGGATGCGGTGCCGG--ATCTAG-AG------GGGACAATACATTTCC---CCTTTCACTAACC-TCA---GCTTTCAAACACTTATAAA-AAATGAATCTTTNT-TCAA--TGTT-GT-CATTTT-AGG-ATCTT-CGACCCC----------------CCCCC---CC-CCCC-CCC---CCCCANCCGT-------------------------TTCTCCG-TTC----TAC--ATACAATTCAT-TGCAAA-AATAGGCTTTT---GT--TTTGA-ACAT-CAATCATTCTGAGTTCTT-----CAGTCTTGCT-TAATATC-TAAATTNATGA--AG-TATTTGTTA-CAA--AA--TAAATGA--ACA-TAGA-TAAAT--TCTAATTGTT-GAG--TTTAAA-AAATCTT-TGAC---CAACATTTGT-ATTAT-TGGCTA---CT--G-AAACTTTG-----CA-TTCTTTT-ACAA-T-CTT----GCAGTC-A---TTACGT-----------------GTGTTTGT--GCTCNTGT--G-CA--GGTAACATTCC-----AAAAG---AGA----TCA--AA---A--AC--CCTGCAA--ATA--TGTAATTGTT-GTAC----AAAG----T-TTTATA--AGT-ACTACA-AATT-GCCCC-T-AA---TGA-TTT-TANTGAAA--------------------ATACTTTA---GATATTGGN------------CATA----GCAAAAAA-TATGTAAAAGTCGATCTGAT-CATAAT-TTANAT--CACCAT-ACTATGTTGTACA-TAATGATTT-C-GTTAATGCAACAGGCCTGATGCAT-GCCGTACACT-ATAAG-ACANATTTTAT-------CACATCCAGC-TC---TTGTACAAAATTCAGGTT-CATTGC-ACACG--ACA-TTTANTTTATTTT-CCACAGACATCAG-----AAGT-AT-GT-AATTAGGA-GTT-AT-CGTA--TACGTTACGTACC----TAG-ATCTTATACA-TATATAA-GTA-CCTCTCTC-CCTCCCTACCC--CCCCC--TTT-TTTTTTT-TAAA-CCAAAT--AACACTTTTTT--GAA---TCCCGTTCATCTC-AAACTT-ACAG-CAGAAACTGGCCCCGCAAAGCGACTT-AATGAAGGTGAATGG-GGGGAAATCTATGTCATT-G-T-TTCATCA-TTTACGTTTC-ATTTAGGTTGAAGG-GTGCG-----TGTGTGTGTGTGTGTGT-G-GGGGGGGGGGGGTGGTATGTGC--ATAAGACGTGCT-ATTCTCA--GTC-AGAAACTTATGCATG-TACTATTATCT-AA-TACACA-CTGT-CAC--AGTTAAA-TTACAC-NTCAT-TTGA-TTGATAAAAACAAAC--TTACATTTGAA--ACG---ATCGATCT-GTTT-T--CTCTCGTTGT--A-TA-TTGCAACTGC-A--ATGGGG---CTACAGCTAT--NA-G-GCACAGCA---AAACAATTA-TTTTTCTGTGAC-TTTTG-TT-CTG-AAA-TGGGGTA-ATCATTC-ACTCCC--TACTAGCCTTT-CTGGATA-CCGT--G-TGTCACTGTTACA-TTT-CCCCATGGC--GCAG-G-TTTCTC-ACAATTTTTCAAGCGAATTCAAAGCATTTCG--TTT-AAAACATCTGC-A-TCT-AACACCTCCACCATG-TGCA-CCATCGGTG-TTTTGAACGG-AG--GTCATGG--CGGACAA-TTCTCCCGCGATTTC-TGACTTG-GCTGTGCGAAGATGGTA-A-CTCCAC-CTCCCCTGACGAC-GTGGAAGG
16 sequences could not be aligned to this reference sequence:
Unaligned ( gi|8 ): ATCGTTAATCGCTCGTATTTTTACCTGCGGATATATTTCACAGACAATCAGTTTGTCAAAAGACTCTAGACCCAACTTGCTCGCCAGAAAAGTTACTGTCTAGTTCAACAAATTTCACTCGCTAGTAAACGCAGAAGTAGCAACGAAATTGTGAAACCTTGCGTGCACTAGATGCTTTCGTTAGCATGATGTTACATTGGCATGTTATTTGTGCAGAAATGTTGTAGAACAAATTGTCCAATATTCATTCAGAGCAGCAACAATTCTTGCAGCTAGTGCCCAGATGCGATACCAACATTGTATTTCATTTTGTTATTTGGGATTTTA
Unaligned ( gi|9 ): CTCTTCTCACCGCTCCGCCTACTGATGGCAACGTCACATTCGCGTGTTACAGATCCTCAAGCTTGCATTAAACAACATGGCGGCGATGTCGATCTTGCACGGGTATCATGTAATCGCCTCGTTTGGCACGAATTCTTCACAGAAAGTTTGTCAAATAGGATCTGCACATTACTTCATGAGAAAGTTACCGTTTCAAAAAGTGTTCTACTGAGAAAAAGAACGCATGAAACAGCAATTGTAATCAACTGGCCACTGGGATGCTTTCCGTAGCCTGAATGCCATGTTATTACCAGTGTGCATGAAATGG
Unaligned ( gi|10 ): TTTTTAACAGCAAAGTTTGTCAAAGGATCTGACACGTTCAGAGAAAGTTGCGTTCACAAAATATTTCAATGAGTGAAAAACGCAGAAAACAGTTTAAACGTGTGCACTAGGATGCTTTCGTAGCAATGATTATATTATTGTGTGCAACGAGATGGCTGGCAGAACAATATTGTCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTCACAGAAATGGGTAAACTACGGACACCAATTTCGAGTTTATTGTTT
Unaligned ( gi|11 ): CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCGCCCCCCCCCCCCCCCCCCCCCCCCCCCCCACCCCCCCCCCCCCCCCCCCCCCCCCCCCAATGAAAATATGTATTAAAAGTTATGAAATTCATTCTTATCACAGTTTATTTCTAAAATAGTGAATTTCAGAACAAAAAGTCTGCACTAAATGAACAATATTATATAAATTTTGATAAATTTATAACTCTAGCATTGAAACTATTTGTAACA
Unaligned ( gi|12 ): TCACTCTTCCACGCTCCGCCCACTGATGGCAACGTCACACACGTGTTTACAGACTCCGTCAACTTACATGTAAACAACATGGCGAGCGATGTCGATCTTGCACCGGGTATATTGTTAATCGTCCCGTTTGACAACGAATTTTCACAGAAAAGTTTGTCAAATGATCTGACATACTTCAGAGAAAGTTACTTACGTTCACAAAATTTCACTGACTAAAA
Unaligned ( gi|13 ): CCCCACCCCCCCCCCCCCCCCCCCCCCCCCCCCCTCCCCCCCCCCCCCCCCCCCCCCCCCCCCTTTTCACCTACATATTTATAGTACATGTATTGATAACATGAAAGGTATATTATTGCAATTGATATCACAATATTTACGTATTCTAATAACAACCTTGACCTTATTGACTTAGAAATTGATGCGTAGCATCATATCT
Unaligned ( gi|14 ): CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCACGCCCCCCCCCCCCCTTTAATTTGTGCCAACTTCTTAAAAGTATACTTTTATCATACTTGCATATCATTTTTTATTTTAACATTTCAATATAAATTCATCAATCTTTATTTCATAATTAAT
Unaligned ( gi|16 ): CCCCCGCCACCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCTTAAGTATTTCACAATACACATTCACACCGAATAAATATATCTGTATTGACAAAGTTCGTTGATATCACGGAGAAATAT
Unaligned ( gi|17 ): ACTCTTTCCACGCTCCGCCCACTGATGGCAACGTCAGCACGCGTGTTTACAGACTCCGTCAACTTTACACTGTAAAACAACATGGCGATCATGTCGAATCTTGCACGGGTCATC
Unaligned ( gi|18 ): ACTCTTCCACGCTCCGCCCACTGATGGCAACGTCACTCACGTGTTTACAGACTTCGTCAGCTTACATGTAATTAACATGGCGAACGATGTCAATCGTGCATCGGGTACC
Unaligned ( gi|19 ): TTGGTATAAGTTTTTTCTATTGTAAATAGATATATTGTTTTTGCTGGTAAAAGGAATATCTTGTTGATAGGTTGGATCTATTATAAACTGG
Unaligned ( gi|20 ): GATTTAAAAATGTTTAGTTAAAAAATCCTGAATAAAATAGGTATATATTTGCTGCGTTACCGTTCCACTTATAAATGTTTCATTGCTTTC
Unaligned ( gi|21 ): CCCCCCCCCCCCCCCCCCCCCCTCAGCTAAATTCACCCAGATCTGTGGTTATAATTGGTAAGAAAAGTTTAGTGGATATCTCAATA
Unaligned ( gi|22 ): CCCCCCCCCCCCCCCCCCCTTTTTACCCTCAGCGGGATATTTTTTTATTGACATTGTATTAGATAAATTTTGGAAGGTAT
Unaligned ( gi|24 ): CACTCTTCCACGCTCCGCCCACTGGAGGCAACGTCACACACGATGTTTACAGACTCCGTACAACTTACATG
Unaligned ( gi|25 ): ATTCACTCTTCCACGCTCCGCCCACTCCGTCAACTTACATGTAAACAACATGG
Alignments
lowQualScore : 111111111111111111111111111111111111
lowQualScore : 1 111 1 1 33333333 11 11 222222 222 666666666666666666666666 22 111 111 333333333333 22222222 11 1111 1 111 111111 22222 111 11 1 1 33333 11 11 222222222222 88888888888888888888888888888 22222 1111 1 1 111111111111111 222 11 22222222222 2 1 11 1 1 11 11 11 11 11 111 111 11111 222 1111 22222 1 11111 222222222222222222222222222222222222 11 111111 11 44444444444444444444444444444444444444444444 111 11 11 222222 111111 11 88888888888888888888888888888888888888888888888888888888 2222222 1111 1 11 1 1 1 1 1 11 1 1 33333333 1 2222 1 1 111 1 1 1 22222 1 1 11 1 1 1 111 2222 1 11 1 1 1 111 11 11 1 111 1 222 11 111 1 1 1 1 1 11 1111 1 11 1 111 1 222222 111 11 1 11 1 1 1 1 1 1 11 1 333 2 1 22 11 2222 1 2222 1111 1 1111 111 333333333 3333 22 11 1 1 1 1 11 1 11 1 1 11 1 1 2 11 11 1 11 1 111 1 1111 1 1 1 1 1 1 11 11 1 1 1
lowQualScore : 3 6 999 3 3 7 99999999 88 88 0 0 222222 888 000000000000000000000000 4 8 22 444 8 777 888888888888 99999999 99 33 6 4444 3 6 1 6 0 0 555 6 999999 44444 1 111 88 5 7 2 5 5 8888888 5 66666 5 5 44 5 00 5 1 555555555555 5 77 888 11111111111111111111111111111 888 8 33333 5 77 6666 3 3 666666666666666 6 555 33 11111111111 6 6 0 33 0 0 11 11 11 11 8 8 11 3333 8 99 8 0 8 444 222 8 00000 222 8 2222 00000 8 0 0 8 6 8 33333 888888888888888888888888888888888888 1 11 444444 8 11 11111111111111111111111111111111111111111111 111 99 11 8 111111 444444 55 6 999 6 55555555555555555555555555555555555555555555555555555555 99 6 6 7777777 4444 88 8 0 44 33 0 2 3 0 2 0 0 7 2 0 99 0 0 1 0 55555555 0 0000 333 0 0 2 666 0 3 0 3 0 2 55555 0 0 33 66 0 0 0 777 3 1111 0 2 77 0 0 5 222 1111 2 33 33 0 666 0 333 2 33 777 0 0 3 0 3 0 3 3 3 0 2 2 0 22 3 9999 0 77 0 555 0 888888 2 8 666 2 2 33 2 2 0 3 33 0 3 9 0 0 0 3 0 0 33 3 0 000 0 0 9 33 3 33 8888 0 4444 4444 0 4444 777 999999999 3 4444 55 22 0 0 0 0 33 66 0 2 33 2 2 0 3 0 33 0 2 2 0 0 22 33 0 33 2 0 3 2 777 0 3 4444 0 2 0 0 0 5 0 33 33 0 7 3 2 0 8 6 6 888 8
lowQualScore : . . ... . . . ........ .. .. . . ...... ... ........................ . . .. ... . ... ............ ........ .. .. . .... . . . . . . ... . ...... ..... . ... .. . . . . . ....... . ..... . . .. . .. . . ............ . .. ... ............................. ... . ..... . .. .... . . ............... . ... .. ........... . . . .. . . .. .. .. .. . . .. .... . .. . . . ... ... . ..... ... . .... ..... . . . . . . ..... .................................... . .. ...... . .. ............................................ ... .. .. . ...... ...... .. . ... . ........................................................ .. . . ....... .... .. . . .. .. . . . . . . . . . . .. . . . . ........ . .... ... . . . ... . . . . . . ..... . . .. .. . . . ... . .... . . .. . . . ... .... . .. .. . ... . ... . .. ... . . . . . . . . . . . . . .. . .... . .. . ... . ...... . . ... . . .. . . . . .. . . . . . . . . . .. . . ... . . . .. . .. .... . .... .... . .... ... ......... . .... .. .. . . . . .. .. . . .. . . . . . .. . . . . . .. .. . .. . . . . ... . . .... . . . . . . . .. .. . . . . . . . . ... .
lowQualScore : 3 7 333 3 3 3 00000000 33 33 8 8 666666 000 000000000000000000000000 6 0 00 000 0 000 999999999999 77777777 22 33 7 2222 3 7 7 7 7 7 888 7 222222 33333 5 777 33 5 3 0 7 1 4444444 7 33333 7 7 44 0 11 0 4 666666666666 0 55 888 99999999999999999999999999999 888 9 99999 7 99 6666 3 3 333333333333333 7 222 88 00000000000 7 7 8 88 0 0 00 00 66 00 0 0 00 8888 0 00 0 8 0 000 222 0 22222 000 0 2222 00000 0 8 8 0 0 0 00000 444444444444444444444444444444444444 0 00 222222 0 00 88888888888888888888888888888888888888888888 888 00 22 0 000000 333333 88 7 000 7 00000000000000000000000000000000000000000000000000000000 22 7 7 8888888 2222 88 0 0 22 88 0 5 2 0 5 0 0 0 5 0 22 0 0 0 8 00000000 0 8888 888 0 0 5 222 0 2 8 2 0 5 00000 0 0 22 55 0 0 0 000 2 2222 0 5 00 0 0 5 888 5555 5 88 88 0 888 0 000 5 88 555 8 0 2 0 2 0 2 2 2 0 5 5 0 55 2 5555 0 00 0 000 0 222222 5 8 222 5 5 88 5 5 0 2 88 0 2 2 0 0 0 2 0 0 88 2 0 000 0 0 8 88 2 88 8888 0 8888 8888 0 8888 555 555555555 5 5555 55 55 0 0 0 0 22 55 0 5 88 5 5 0 2 0 88 0 5 5 0 0 00 88 0 22 5 0 2 5 000 0 2 2222 0 5 0 0 0 5 0 88 88 0 0 3 0 8 0 7 7 333 0
consensus : AAATGCCAAA-ATCAGTN--AA-TGGACA-AAGCAGCACGC-----ACTTTAA--GTA--AGATACAGA-C---AATATATTTTTTT-AAAA---------ATAATCAG-CACGTAT-CACCTAAAAC---TA-ACCCATTGTATTT-AGA--GCATCTAAAAAA-AA-----TGA--GGGACTC-ATAAAT-GAAATT----GGG-TC-AATAATCA-GGGATGCGGTGCCG--GATCTAG-AG------GGGACAATACATTT-CC--CCTTTCACTAACC---TCA--GCTTTCAAACACTTATAAA-AAATGAATCTTTNT-TCA--A-TGTT-GT-CATTTT-A-GG-ATCTT-CGACCCC------------CCCCCCC-CCCC-CCC---CCCCANCC--------------------------GT---TTCTCCGTTC----T-AC--ATNCAATTCAT-TGCAAA-AATAGGCTTTT---GT--TTTGA-ACAT-CAATCATTCTGAGT----TCTT-C-AGTCTTGCT-TAATATC-TAAATTNATGA--AG-TATTTGTTA-CAA--AA--TAAATGA--ACA-TAGA-TAAAT--TCTAATTGTT-GAG--TTTAAA-AAATCTT-TGAC---CAACATTTGT-ATTAT-TGGCT---A-CT--G-AAACTTTG-----CA-TTCTTTT-ACAA-T-CT--T--GCAGTCAAT-------ATT-A-A-------CGT-G-------TGTTTGT--GCTC-T--GTG-CA--GGTAA--TA--TT--CCAAAAG---AGA----TCA--AA---A--AC--CCTGCAA--ATA--TGTAATTGTT-GT-A---CAAAG----T-TTTATA--AGT-ACTACA-AATT-GCCC-C-----------T-AA--TGA--------TTTT--------AA------------TG--A-A-AATACTTTAGATA-T-TGNGCATA----GCAAAAAA-TATGTAAAAGTCGATCTGAT-CATAAT-TTANAT--CACCAT-ACTATGTTGTACA-TAATGATTT-C-GTTAATGCAACAGGCCTGATGCAT-GCCGTACACT-ATAAG-ACANATTTTAT-------CACATCCAGC-TC---TTGTACAAAATTCAGGTT-CATTGC-ACACG--ACA-TTTANTTTATTTT-CCACAGACATCAG-----AAGT-AT-GT-AATTAGGAG-TT-ATC-GTA--TACGTTACGTACC----TAG-ATCTTATACA-TATATAA-GTA-CCTCTCTC-CCTCCCTACCC--CCCCC--TTT-TTTTTTT-TAAA-CCAAAT--AACACTTTTTT--GAA---TCCCGTTCATCTCAAA-CTT-ACAGC-AGAAACTGGCCCCGCAAAGCGACTT-AATGAAGGTGAATGG-GGGGAAATCTATGTCATT-GT-TT-CATCA-TTTACGTTTC-ATTTAGGTTGAAGG-GTGCG-----TGTGTGTGTGTGTGTGT-G-GGGGGGGGGGGGTGGTATGTGC--ATAAGACGTGCT-ATTCTCA--GTC-AGAAACTTATGCATG-TACTATTATCT-AA-TACACA-CTGT-CAC--AGTTAAA-TTACAC-NTCAT-TTGA-TTGATAAAAACAAAC--TTACATTTGAA--ACG---ATCGATCT-GTTT-T--CTCTCGTTGT--A-TA-TTGCAACTGC-A--ATGGGG---CTACAGCTAT--NA-G-GCACAGCA---AAACAATTA-TTTTTCTGTGAC-TTTTG-TT-CTG-AAA-TGGGGTA-ATCATTC-ACTCCC--TACTAGCCTTT-CTGGATA-CCGT--G-TGTCACTGTTACA-TTT-CCCCATGGC--GCAG-G-TTTCTC-ACAATTTTTCAAGCGAATTCAAAGCATTTCG--TTT-AAAACATCTGC-A-TCT-AACACCTCCACCATG-TGCA-CCATCGGTG-TTTTGAACGG-AG--GTCATGG--CGGACAA-TTCTCCCGCGATTTC-TGACTTG-GCTGTGCGAAGATGGTA-A-CTCCAC-CTCCCCTGACGAC-GTGGAAGG
Reference ( family-1037 ) : AAATGCCAAA-ATCAGTN--AA-TGGACA-AAGCAGCACGC-----ACTTTAA--GTA--AGATACAGA-C---AAT---TTTTTT--AAAA---------ATAATCAG-CACGTAT-CACC--AAAC---TA-ACCCATTGTATT--AGA--GCATCTAAAAAA-AA-----TGA--GGGACTC-ATAAAT-GAAATT----GGG-TC-AATAATCA-GGGATGCGGTGCCG--GATCTAG-AG------GGGACAATACATTT-CC--CCTTTCACTAACC---TCA--GCTTTCAAACACTTATAAA-AAATGAATCTTTNT-TCA--A-TGTT-GT-CATTTT-A-GG-ATCTT-CGACCCC------------CCCCCCC-CCCC-CCC---CCCCANCC--------------------------GT---TTCTCCGTTC----T-AC--ATACAATTCAT-TGCAAA-AATAGGCTTTT---GT--TTTGA-ACAT-CAATCATTCTGAGT----TCTT-C-AGTCTTGCT-TAATATC-TAAATTNATGA--AG-TATTTGTTA-CAA--AA--TAAATGA--ACA-TAGA-TAAAT--TCTAATTGTT-GAG--TTTAAA-AAATCTT-TGAC---CAACATTTGT-ATTAT-TGGCT---A-CT--G-AAACTTTG-----CA-TTCTTTT-ACAA-T-CT--T--GCAGTC----------ATT-A---------CGT-G-------TGTTTGT--GCTCNT--GTG-CA--GGTAA--CA--TT--CCAAAAG---AGA----TCA--AA---A--AC--CCTGCAA--ATA--TGTAATTGTT-GT-A---CAAAG----T-TTTATA--AGT-ACTACA-AATT-GCCC-C-----------T-AA--TGA--------TTTT--------AN------------TG--A-A-AATACTTTAGATA-T-TGGNCATA----GCAAAAAA-TATGTAAAAGTCGATCTGAT-CATAAT-TTANAT--CACCAT-ACTATGTTGTACA-TAATGATTT-C-GTTAATGCAACAGGCCTGATGCAT-GCCGTACACT-ATAAG-ACANATTTTAT-------CACATCCAGC-TC---TTGTACAAAATTCAGGTT-CATTGC-ACACG--ACA-TTTANTTTATTTT-CCACAGACATCAG-----AAGT-AT-GT-AATTAGGAG-TT-ATC-GTA--TACGTTACGTACC----TAG-ATCTTATACA-TATATAA-GTA-CCTCTCTC-CCTCCCTACCC--CCCCC--TTT-TTTTTTT-TAAA-CCAAAT--AACACTTTTTT--GAA---TCCCGTTCATCTCAAA-CTT-ACAGC-AGAAACTGGCCCCGCAAAGCGACTT-AATGAAGGTGAATGG-GGGGAAATCTATGTCATT-GT-TT-CATCA-TTTACGTTTC-ATTTAGGTTGAAGG-GTGCG-----TGTGTGTGTGTGTGTGT-G-GGGGGGGGGGGGTGGTATGTGC--ATAAGACGTGCT-ATTCTCA--GTC-AGAAACTTATGCATG-TACTATTATCT-AA-TACACA-CTGT-CAC--AGTTAAA-TTACAC-NTCAT-TTGA-TTGATAAAAACAAAC--TTACATTTGAA--ACG---ATCGATCT-GTTT-T--CTCTCGTTGT--A-TA-TTGCAACTGC-A--ATGGGG---CTACAGCTAT--NA-G-GCACAGCA---AAACAATTA-TTTTTCTGTGAC-TTTTG-TT-CTG-AAA-TGGGGTA-ATCATTC-ACTCCC--TACTAGCCTTT-CTGGATA-CCGT--G-TGTCACTGTTACA-TTT-CCCCATGGC--GCAG-G-TTTCTC-ACAATTTTTCAAGCGAATTCAAAGCATTTCG--TTT-AAAACATCTGC-A-TCT-AACACCTCCACCATG-TGCA-CCATCGGTG-TTTTGAACGG-AG--GTCATGG--CGGACAA-TTCTCCCGCGATTTC-TGACTTG-GCTGTGCGAAGATGGTA-A-CTCCAC-CTCCCCTGACGAC-GTGGAAGG
gi|1 : ATACAG--C---AATATATCTTTT--AAAA---------ATA----G-CACATAT-TACCTAAAAC---TA-ACCC---GTGTT--A-------TCTAAATGA---------GA--GGGGCT--ATAGAT-TAAATT----GGGGCC-AATAATCA-GTGATGCAGTGCTG---ATGTAA-AG------GGGACAATAAATCT-AGAACTTGTCACCAACC---TCAAAGCTC---AACACTTATAAA-GAATGA-----TAT-TCA--AATGTT-GT-CATTT--A-TG-ATCTT-CGACACC------------CCTCCCC-CCC------------AGTGTA------------------------GT---TTTTCCGTTC----T-AC--AT---TTTTAT-TGCAAA-AATAGGC--TT---GT--T---A-AC---CAATCATTCTGAAT------CT-C-AGTC-TGCTGTAATATC-TAAAT
gi|15 : actcttccacgctccgccctgatggcataacagtcatcacgtgttacaagactccgtcaacttacatgtaaacaacatgggtgcatgtcatgcttgcaccgtacatattgtaaatcgcctcgttttgacgacgaattgttcacagaaaagttgtcaaggatctgacacagcttgcagagaaagttacgttcactaaaatttatgagtcaataacgcagaacagcacttgtaaacgggtgctactcatagtctcgatgctttcgtaacatggatgcatgtattatgtgtacagatatggctgcagaaaaactgtcccgatatttttacagagagctacatgctgcagctagctgcatcagatggtaaactacgggaaattaaacgagtttaattttttgtgaggaatttaaaaatgttgttttagttaaaaaacttaataaaatagccctaaaacgtctgcgtttacccgttcccattttataagatgttttcatctgctgtctgcatatttatattgtatttttcagcctaactaatagccacttccacaaatattgaactacattgggatatattaaaaattggttgcttaaagatttatatagtggcattgcatatgtatcccccttttttccaggtctatctccctaatccaatatatatgctaataaaatacacggacggttcgggtggtaacacccgtcacaggcaatcacagaagggaaaaaaactcgtaacgtaattaattatagtaatagttcatttatttgtaaatgccatattgaacacagtaaacttatattttcagccagtttaaagataacatccatgggtcagcaatggaatggaacacacaaacaacatacaagtcaataaggcagataatctttatatcaaagttgatcaatgcatagtgcgattgaaattaaaattcttgtattccaaataattgtattgccctgatcatgttgagaataatgcaattcttttgtcatgtcctccttcttttacgtacttgggaaacttgcacaatcaaatctccaagcaaagtacatgtttgcaaggttaattgtaaaatatatcaaaacacgccttggtattcttttctattgtaaagagaattgttttctgctaaaaaggggaagcttgtgatactgggttgatctacataactggagttatgatcgattcgtatgctctgttgatgacgagtgtgatctctttagctaaaaaattctgctgtaccaagtatatccaaatgaatcgtaaaaaaaaaaccgacaagaatatttttttaatatgtcaaatgccaaatcaT-A-GG----TC-CAACCCC------------CCCCCCC-CCCC-CCC---CCCCCTC----------------------------T---CTCTCTGTT-----T-AT--ATGCGATTC
gi|2 : catgtttttcataataaactcAAATGCCAAA-ATCAGTT--AA-TGGACA-AAGCAGCAC-------ATTTTAACAGTA--AGATACAAA-C---AAC---TTTTTT--TACA---------ATAATCAGTCATTTAT-CAGC--AAAC---TATAACCATTGTATTTAAGAAGGCA-ATAAAAAA-AAACCAATGA--GGGACTC-ATAAAT-GAAATT----GGA-TC-AATTATCAAGGGATGCGGTGGCG--GATCTAG-AG------GG-ACAATACATTT-TC--CCCTTCACTA-CC---TCA--GCTTTCAAACA-TTATAAA-A--TGAATCTTTCT-TCT----TGTT-GTTCATTTT-A-GGCATCTT-CGACCCC------------CCCCCCC-CCCC-CCC---CCCCAA----------------------------GT---TT-TCCGTTT----TTAT--ATACAATTCATCTGCAAAGAATAGGCTTTT---GT--TTTGA-ACAT-CAAT--TTCTGAGT----TCTT-CCAGTCTTGCTCTAATATC-TAAATTTATGA--AG-TATTTGTTA-CAA--AA--TAAATGA--ACA-TAAA-TAAAT--TCTAATTGTT-GAG--TTTAAA-AAATCTTCTGAC---CAACATTTGT-ACTAT-TGGCT---AACT--G-AAACTTTG-----CA-TTCTTTT-ACAA-T-CT--T--GCAGTC----------ATT-GAATATAGTGCATTG-------TGTTTGT--GCTC-T--G-G-CA--GGTAA--TA--TTT-CCAAAAG---AGA----TCA--AA---A--AC--CCTGCAA--ATA--TGTAATTGTT-GT-A----AAAG----T-TTTATA--AGT-ACTACA-AATT-GCCC-C-----------T-AA--TGA--------TTTT--------A-------------TG--ACATAATACTTTAGATA-C-TGCGCATA----GCAAAAAA-TATGTAAAAGTCGATCTGAT-CATAAT-TT-TAT--CACCAT-ACTATGTTGTACA-TAATGATTT-C-GTTA-TGCATCAGGCCTGATGCAT-GCCATACACT-ATAAG-ACAAATTTTAT-------CACATCCAGC-TC---TTGTACAAAATTCAGATT-CATTGC-ACACGCCACA-TTTAGTTTATTTT-CCACAGACATCAG-----AAGT-AT-GT-AATTAGGAGGTT-ATCCGTA--TACGTTACGTACC----TAG-ATCTTATACA-TATATAA-GTA-CCTCTCTC-TCTCTCTACCC--CCCCCCTTTT-TTTTTTT-TAAA-CCAAAT--AACACTTTTTT--GAA---TCCCGTTCATCTCAAAACTT-ACAGCCAGAAAC-GGCCCCGCAA-GCGACTT-AATGAAGGTGAATGG-GGGGAAATCTATGTCATT-GT-TTTCATCA-TTTACGTTTC-ATTTAGGTTGAAGG-GTGCG-----TGTGTGTGTGTGTGTGTGG-GGGGGGGGGGGGTGGTATGTGC--ATAAGAC--GCTCATTCTCA--GTC-AGAAACTTATGCATG-TACTATTATCT-AA-TACACA-CTGT-CAC--AGTTAAATTTACA--TTCAT-TTGA-TTGAATAAAACAAAC--TTACATTTGAA--ACG---ATCGATCT-GTTT-T--CTCTCGTTGT--A-TA-TTGCAACTGC-A--ATGGGG---CTACAGCTATTACA-GCGCACAGCA---AAACAATTA-TTTTTCTGTGAC-TTTTG-TT-CTG-AAA-TGGGGTA-ATCATTC-ACTCCC--TACTAGCCTTT-CTGGATA-CCGT--G-TGTCACTGTTACA-TTTCCCCCATGGC--GCAG-G-TTTCTC-ACAATTTTTCAAGCGAATTCAAAGCATTTCG--TTT-AAAACATCTGC-ACTCT-AACACCTCCACCATG-TGCAGCCATCGGTG-TTTTGAACGG-AG--GTCATGG--CGGACAACTTCTCCCGCGATTTCGTGATT---GCGTTGCGGAGATGGTACA-CTCCCA-CTCCCCTGACGACTATGGAAGGtcggtaatagtgtacagttctattatgaacattagagaacattttcaaaatcaaatattaa
gi|23 : AAAG----T-TTTATA--AGT-ACTAAA-AATT-GCCC-C-----------TAAA--CGA--------TTTT--------A-------------TGAAA-A-AATACTTTAGAT-----------------------A-TATGTAAAAGTCGATCT-AT-Ct
gi|26 : TTG-GCTGTGCGAAGATGGTA-A-CTCCAC-CTTCCCTGACGAC-GTGGAAG
gi|27 : aTA-A-CTCCAC-CTCCCCTGACGAC-GTGGAAGcat
gi|28 : TTG-GCTGTGCGAAGATGGTA-A-CTCCAC-CTctg
gi|3 : TTATAAATAAATGAAT-TATGTATCATAA-TGT------ACATT-ACGG-CCCCC-C--CCCC------------CCCCCCC-CCCC-CCC---CCCCATCC--------------------------GT---Tt
gi|3 : actcttccacgctccgccactggatggcaacgtcacacgcgtgtttacagactcgtcaacttgcatgtaaacaacatggcgcgcgatgtccgctcttgcaccgggtatcatgttaagtcgccttcgtttgaaccacgaaattttacagaaaagttgtccaaaggatctgacacccttctgagaaagttacgttcacaaaatttcactgagtaaaatcgcagaaacacaattgtaaaacgtgtgcaactagatgctttcgtagcatgaattgcattgttattacagtggcagaaatggtgtagaacaaattgtcccaatattttaacagagagctactgttctgaggctagtgcacagatgggtaaacacggtgcaattattgagtttaaattgttttgttaaggaatttaaaatggttgtttagttaaaaactgaataaaaaataggctatatttgcgcgttttaccgttcttttaatttttataaatgtttcatctgcttttaactaaaatcaccatcttccaaatgtgaaactatcaattgtttaagattttaaggacaagtatcccccttttccccccaggctaccctaatccaatatatttctataaatacacccgtccacacaaatccAAATGCCAAA-ATCATTA--AACTCGACA-AAACAGCATGC-----ACATTAA--GTA--AG-TACAAAAC---AAT---TTTTTTT-AAAC---------ATA-TC---CATATATGCACC--ACA----TA-ACCCATAGTATT--AGA--GCAT--AAAAAACAA-----TGA--GGGA-TC-ATAAAT-GAAATT----GGG-TC-AATAGCAA-GGGGAGCACTGCTG--GATCTAG-AG------GGGACAATACATTT-CC--CCTT-CACTCAC----TCA--GCTT-CAAACA-TTATAAA-AA-TGAATCTTCTT-T------TGTT-GT-CATTTT-A-GG-ATC----------------------CCC--CC-CCCC-CCC---CCCCAA----------------------------GT---TT-TCCGTTTATA-T-ACAAATACAATTCAT-TGCAAA-AATAGGC-TTT---G----TTGA-AC---C-ATCATTCTGAGTCTCATCTT---AGTCTTGCTCTAATATC-acacgtattaaaaatacagtagccaattaaagatagcattcctgtggggtcaatggaactgaatctaactcaaagacaagatacattaagtcatacggcaaagaatatttatcatcaaaattgatcaatgccacaagtgttgaaatataaaactttttgaattccaaataatgttctgctgcctcatcagtgttaaaataattggcaaattcttttgtcatgtccctccttctttacatacttgggaacttgcaacagatacaaacttccaacaaagtacatgttgcagttcaattggtaatatcaaatcagccttcataagtgggtatttttttccattgtaagtagaatattgtttttggtacaaagggatagctttgttgatagggttgatctaataactggagttgatgatgattcagtctgaggtatgctctgttgatgaagagtgtggtttttgactaaaaaatgctgctgtaccaagtattctcaaatgaattgtaaacaaagacagaatattttttaatactgtgcaaaatgccaaaatcattaaactcgacaaaacagcatgcacattaagtaagtacaaaacaattttttttaaacatatccatatatgcaccacataacccatagtattagagcataaaaaacaatgagggatcataaatgaaattgggtcaatagcaaggggagcactgctggatctagaggggacaatacatttccccttcactcactcagcttcaaacattataaaaatgaatcttcttttgttgtcattttaggatcccccccccccccccccaagttttccgtttatatacaaatacaattcattgcaaaaataggctttgttgaaccatcattctgagtctcatcttagtcttgctctaatatc
gi|4 : actcttccacgctccgccactggatggcaacgtcacacgcgtgtttacagactcgtcaacttgcatgtaaacaacatggcgcgcgatgtccgctcttgcaccgggtatcatgttaagtcgccttcgtttgaaccacgaaattttacagaaaagttgtccaaaggatctgacacccttctgagaaagttacgttcacaaaatttcactgagtaaaatcgcagaaacacaattgtaaaacgtgtgcaactagatgctttcgtagcatgaattgcattgttattacagtggcagaaatggtgtagaacaaattgtcccaatattttaacagagagctactgttctgaggctagtgcacagatgggtaaacacggtgcaattattgagtttaaattgttttgttaaggaatttaaaatggttgtttagttaaaaactgaataaaaaataggctatatttgcgcgttttaccgttcttttaatttttataaatgtttcatctgcttttaactaaaatcaccatcttccaaatgtgaaactatcaattgtttaagattttaaggacaagtatcccccttttccccccaggctaccctaatccaatatatttctataaatacacccgtccacacaaatccaacggatggggggggggggggggggggggggggggccgtaatgtacattatgatacataattcatttatttataaacacgtattaaaaatacagtagccaattaaagatagcattcctgtggggtcaatggaactgaatctaactcaaagacaagatacattaagtcatacggcaaagaatatttatcatcaaaattgatcaatgccacaagtgttgaaatataaaactttttgaattccaaataatgttctgctgcctcatcagtgttaaaataattggcaaattcttttgtcatgtccctccttctttacatacttgggaacttgcaacagatacaaacttccaacaaagtacatgttgcagttcaattggtaatatcaaatcagccttcataagtgggtatttttttccattgtaagtagaatattgtttttggtacaaagggatagctttgttgatagggttgatctaataactggagttgatgatgattcagtctgaggtatgctctgttgatgaagagtgtggtttttgactaaaaaatgctgctgtaccaagtattctcaaatgaattgtaaacaaagacagaatattttttaatactgtgca--GCATTTGAAAAA-AA-----TGA--GGGACTC-ATAAAT-GAAATT----GGA-TC-AATA-TCA-GGGATGCGGTGCTG--GATCTAG-AG------GGGACAATACATTTTCC--CCTCTCACTAACC---TCA--GCTTTCAA-CATTAGTAAA-AATCGAATCTTT-T-TC-----TGTTTGT-CATTT--A-GGCATCTTTCGACCCCCCCCCCCCCCCCCCCCCCC-CCCC-CCC---CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCGT---TTCCCCCCCCCATTT-GT--ATACAATTCATCTGCAAAGAATAG--CTTT---GT--TTTGA-ACAT-CAAT--TTCTGAGT----TCTTCC-AGTCTTGCT-TAATATC-TAAATTGATGA--AG-TATTTGTTA-CAA--AA--TAAATGA--ACA-TAAA-TAAAT--TCTAATTGTT-GAGTTTTTAAA-AAATCTT-TGAC---CAACATTTGT-ATCGTATGGCTA--A-CT--GCAAACTTTG-----CA-TTC-TTT-ACAA-T-CTTCT--GCAGTCAATTGAA---ATT-ATAGTG----CAT-G-------TGTTTGT--GCTCGT--G-G-CA--GGTAA---A--TTGACCAAAAAGC-AGA----TCA--AA---G--AC--CCTGCAA--ATAG-TGTAA-TGTT-GT-A---CAAAG----TCTTTATAC-AGTAACTACA-AATT-GCCC-C-----------T-AAC-TGAC-------TTTT--------AC------------TG--A-A-CATACTTTAGATA-TATGCGCATA----GCAAAAAA--ATGTAAAAGTCGATCTGATCCATAAT-TAATAT--CACCATAACTATGTTGTACATTAATGATTTGC-GTTAGTGCAACAGGCCTGATGCATCGCCATACACTAATAAG-ACAATTTCTAT-------CACATCCAGC-TC---TTGTACAAAATTCA-GTT-CATTGCAACAC---CCACTTTACTTTA-TTT-CCACAGACATCAG-----AAGT-ATCGTCAATTAGGAG-TTAATC-GTA--TACGTTACGTACC----TAGAATCTTATACA-TATATAA-GTA-CCTCTCTCTCCTTCTTACCCCTCCCCC--TTTGTTTTTTT-TAAACCCAAAT---ACACTTTTTTGGGAA---TCCCGTTCATCTCAAA-CTT-AC-GC-AGAAACTGGCCCCGCAAAGCGACTGAAATGAA--TGAATGGTGGGGAAATCTATGTCATTCGTGTT-CATCATTTTACGTTGCAATTTAGGTTGAAGGTGTGCG-----TGTTTGTGT-TGTGTGT-GTGGGGGGGGGGGGTGGTATGTGCATATAGGACGT-CT-A-TCTCA--GTCAAGAAACTTATGCATG-TACTATTATCT-AATTACACAGCTGT-CAC--AGTTAAA-TTACAT-TTCATCTTGATTTGATAAAAACAAACTATCACATTTGAA--ACGGTCATCGATCTCGTTTCT--CTCTCGTTGT--AGTA-TTGCAACTGCAA--ATGGGGCGCCTACAGCTAT--TACA-GCACAGC----AAACAATTA--TTTTCTGTGACTTTTTG-TTCCTGAAAA-TGGGGTATATCA-TC-ACTCCCTTTACTAGCCTTTCCTGGATA-CCGTTCG-TGTCA-TGTTACAGTTT-CCCCATGGC--GCAGCGTTTTCTCAACAATTTTCAAAGCGAATTCAAAGCATTTCAGTTTT-AAAACATCTGC-A--CT-AACACCTCCACCATGTTGCA-CCATCGGTG-TTTTGAACGG-AGGCGTCATGGGCCGGACAA-TTCTCCCGCGACTTC-TGACTTGCGTTGCG-GAAGATGGTA-ACCTCCTCACTCCCCTGACGAC-ATGGAGG
gi|5 : ATACAG--C---AATATATCTTTT--AAAA---------ATA----G-CACATAT-TACCTAAAAC---TA-ACCC---GTGTT--A-------TCTAAATGA---------GA--GGGGCT--ATAGAT-TAAATT----GGGGCC-AATAATCA-GTGATGCAGTGCTG---ATGTAA-AG------GGGACAATAAATCT-AGAACTTGTCACCAACC---TCAAAGCTC---AACACTTATAAA-GAATGA-----TAT-TCA--AATGTT-GT-CATTT--A-TG-ATCTT-CGACACC------------CCTCCCC-CCC------------AGTGTA------------------------GT---TTTTCCGTTC----T-AC--ATT---TTTAT-TGCAAA-AATAGGCTT-----GT--T---A-AC---CAATCATTCTGAAT----C--T-C-AGTCT-GCTGTAATATC-TAAATT--TGA--AGCTATTTGTTA-CAAGAAA--TAA-TGA--ACA-TAGA-TACAT--T---ATTATT-GATC-TTTCTA-AAATCTT-TGAC---CAACA---GT-GTGAT-TGGCT---A-CT--G-AAACGATT-----CAGTTCTT-----AACT-CT--T--GCAGTC----------ATT-------------T-G-------TGTGTAT--GCT--T--GTG-CA--GGTAA--TA--------GAATG---ATA----TC----------------CTGCAA--ATACATGTA-----T-GTGA---TAAAG----C-TT------AGT-ACCATA-A-TT-GACC-TAAAGATGATTTT-AG--TGACAAAAATGTTTT--------AGATATGCGTTAAGTG--A-A-ATTGTTTT---TA-T-AGATCATGAAGGGCAAAAAAATATATGAAGTCCGATCTGAT-CATAATCTTAAATTACACCAC-A--ATGT-GTATA-TAAT--TTT-CTGTTAATGCAATAAGTCTGAT---T-GC-GTTCACA-GTAAG-ACACATTGTATACACATGCACATCCAGCCTCAGATTGTACAAGATTTAGGTTGCATAAC-A-ACG--ACA-TT-ATTTTATATCACCA-AGGCACCAACCAGAAAGTGAT-GT-CAT-AGGAG-GT-ATC-GTAAATACGTT---TACTAGAGTAG-AT--TATAAAACACATAATGTAACC-----C-CCTCCCCAGCC--CTCCC--TTT-TTTTTC----AA-CCAAAT--CA-ATTTTTTT--GGACCATCTCGGTCATCTCAAA-CTTTACAGC-AGAAACTGGCATGGCAAAGCGACGT-AATGAAGGTGAATGG-TGGTAA--TTGTTTCATT-TT-TA-AAATA-CTTACTTTTC-ATGTGGGT----GG-GTGCG------GTGTGT-------------CGGGAGGGTGGGTGGTAT-TGC--ATAAGACGTGCT-ATTCTCAAGATT-AGAA--CTAAGCAGGTTACTATTAAGTAAA-TAC-CA-CTGT-CAC--AG-TAAA-TTACA--ATCACATTGA-TTGAT-AAAACAAAC--TTACATTTGAATGACG---TGTGATCT-GTTT-TA-TTCTCATTGA--A-TA-TTGTAACTGC-AGCACGGGG---CCCCGGCAAT--GG-G-GCTCAGCAGT-AAGCAATTA--TTTTCTGTGA---TTTGCTT-CTG-CAATTGGGGTA-ATC-TTC-A--CCC--TA-TA-TCTTT-C-GGGTACCCGT--GTTGTCACTGCTA----TT-CCCCCT-GCTGGCAG-G---TCTT-ACAA--GTTCAAGCGAATCCACA--ATCTCG---TT-AAGACATCTGC-A-TCT-AACA--TCCACCATG-TGCA-CAATAGGTGTTTTTG--CGGAAG--GTCATGG--CGGACAA-TTTTCCCGCGATTt
gi|6 : ggttgatctacataactggagttatgatcgattcgtatgctctgttgatgacgagtgtgatctctttagctaaaaaattctgctgtaccaagtatatccaaatgaatcgtaaaaaaaaaaccgacaagaatatttttttaatatgtcaaatgccaaatcaA--AA--TAAATGA--ACA-TAGA-TAAAT--TCCA-TTGTTTGAG--TTTAAA-AATCTTT-TGAC---CAACATT-GT-AT-AT---GCT---A-CT--G-AAAACTTG-----CA-TTCTTTT-ACAA-TTCT--T--GCA-TC----------ATTGA---------CA--G-------T-TTTGT--GCTCTT--GTG-CA--GGTAA--TA--TT--TCAACAG---AGA----TCA--CA---A--AC--CCTGCAA---TA--TGTAATTGTT-GT-C---CAAAG----T-TTTATA--AGT-ACTACA-----------------------T-AA--T----------TTTT--------AA------------TG--A-A-AATACTTTAGATA-T---GCCATA----GCCAAAAA-TATGTAAAAGTCGATCTGAT-CATAAT-TTAAAT--CACCAT-ACTATGTTGTACA-ATATGATTT-C-TTTAATGCTACAGGCCTGATGCAT-GC--TACACT-AAAAGCCCACATTTTAT--------ACATCCAGC-TC----TGTACAAAATTCAGA-T-CATTAC-ACACG--ACA-TTTA-TTTATTTT-CCACAGACATCAG-----AAGT-AT-G--AA-TAGGAG-TT-ATC-GT---TACGACACGTAGC----TAG-ATCTTATACA--ATATAA-GTA-CC-CTCT---------------CCCCC--TTT-TTTTTTTAAAAA-CCAAATACAACATTTTTTG--GAA---TCCCCCGCATCTCAAA-C-T-ACAGC-AG-AACTGGCCCCGCAAAGCGACTT-AATGAAGGT-AATGT-GGGGAAA-CTAAGTC-TT-G--TT-CATTA--TTACGTTTC-ATTTAGGTT--AAG-GTGCGTGTGTTGTGTGTGTGTGTGTGT-G-GGGGGGGGGGGGT--TATGTGC--ATAAGACGTGCT-ATTCTCA--GTC-AGAAACTTATGCA-G-TACTAATTTCT-AA-TACACA-CTGTCCACAAAGTTAAA-TTACACTATCAT-TTGA-TTGATAAAAACAAACG-TTACA-TTGAA--ACGT--GTCGATCT-GTTT-TTCCTCTCGCTTTAAA-TACTTGCAACTGC-A--ATGGGG---CTACAGCT------------CAGCACGTAAACAATTATTTTTTCTGTGAC-TTTTG-TT-CTG-AAA-TGGGGT---TAATTCAACTCCT--CCCTAGCCTTT-CTGGATA-CCGT--G-TGTAGCTGTTACA-TTTACCCCA--GC--GCAG-G-TTT-TC-CCAATTTTTCAAGCGAATTCAAAGCATTTCG--TTTAAAAACA-CTGCAA-TCTAAACACCTCCACCATG-TGCA-CCATCGGTG-TTTTG-ACGG-AG--GTCATGG--CGGAGAA-TTCTCCCGCGA-TTC-TGA-TTG-GCTGTGCGAAGATGGTA-A-CTCC-C-CTCCCCTGACGAC-GTGGGAAG
gi|7 : acATGCCACACAT-AGTGGCAA-TGGACACAAGT-GCATGCTCAACACTATAA--GTATTAGAT---GA-CTTAAAT---TTTTTTTTAACATCTTGTCATGTAAT-AT-TATGTAC-CAC----AACCCCTA-ACCCATTGTATTT-AGAA-GCACCTAACAAA-AA-----TGAAGGGGACTCGATAAATAGAAATTCGACGGG-TTTAATGATCA-GGGATGCATTTTCGTGGATCTATTAGACTTCTGGGACAATACATTC-CC--CAGTTCACTAACCCTCTTA--TCCTTCAA-CATTTATTAA-AAATGGATCTTCCT-TCA----T-TT-GT-CATTTTTA-GG-ATTTT-TGACCCC------------CCCCCCCACCCCACCCCTGCCCCAACC--------------------------GCCCATTCCCCCCCC----T-CC--CTCC----CAG-TG-----AATAG--TTTTCCCGTTCTTTGATATATATAATC-------------TCCT-C-AA-ATTGC--AAAAATCTTAAATTAATGAACAG-TATTTGTTACCAA--AAACTAAA-GACCACATTAGATTAAGTGGTTTTATTGTT-GAG--TTTAAAGGAATC-T-TGACCATCAACATAGGTAATTCC-TTTCTTCAA-CTTGA-AAACTTTGTCGATTA-CTCTCTTAATAAGT-CA--TCCGCAGTCAATGTTTAGAACT-A---------TGT-GCAATAGATGTATGCTAGCTCCTGGGTGTCAGGGGTAAATCACTTT--TCAAAAACGCAGATTCCTCATTAATTTACCACAACCTGCAATGATA--TGTACTTGTTGGT-AACTCCAAGCTTTT-TTTATAGGAGT-ACAACACAATTAGCCCAC-----------T-AAACAGA--------TTTCTATCCGGAAA------------CC--A-A-AATACTTTAGTTATT-TAGGTATA----GTAAAcgtg
16 sequences could not be aligned to this reference sequence:
Unaligned ( gi|8 ): ATCGTTAATCGCTCGTATTTTTACCTGCGGATATATTTCACAGACAATCAGTTTGTCAAAAGACTCTAGACCCAACTTGCTCGCCAGAAAAGTTACTGTCTAGTTCAACAAATTTCACTCGCTAGTAAACGCAGAAGTAGCAACGAAATTGTGAAACCTTGCGTGCACTAGATGCTTTCGTTAGCATGATGTTACATTGGCATGTTATTTGTGCAGAAATGTTGTAGAACAAATTGTCCAATATTCATTCAGAGCAGCAACAATTCTTGCAGCTAGTGCCCAGATGCGATACCAACATTGTATTTCATTTTGTTATTTGGGATTTTA
Unaligned ( gi|9 ): CTCTTCTCACCGCTCCGCCTACTGATGGCAACGTCACATTCGCGTGTTACAGATCCTCAAGCTTGCATTAAACAACATGGCGGCGATGTCGATCTTGCACGGGTATCATGTAATCGCCTCGTTTGGCACGAATTCTTCACAGAAAGTTTGTCAAATAGGATCTGCACATTACTTCATGAGAAAGTTACCGTTTCAAAAAGTGTTCTACTGAGAAAAAGAACGCATGAAACAGCAATTGTAATCAACTGGCCACTGGGATGCTTTCCGTAGCCTGAATGCCATGTTATTACCAGTGTGCATGAAATGG
Unaligned ( gi|10 ): TTTTTAACAGCAAAGTTTGTCAAAGGATCTGACACGTTCAGAGAAAGTTGCGTTCACAAAATATTTCAATGAGTGAAAAACGCAGAAAACAGTTTAAACGTGTGCACTAGGATGCTTTCGTAGCAATGATTATATTATTGTGTGCAACGAGATGGCTGGCAGAACAATATTGTCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTCACAGAAATGGGTAAACTACGGACACCAATTTCGAGTTTATTGTTT
Unaligned ( gi|11 ): CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCGCCCCCCCCCCCCCCCCCCCCCCCCCCCCCACCCCCCCCCCCCCCCCCCCCCCCCCCCCAATGAAAATATGTATTAAAAGTTATGAAATTCATTCTTATCACAGTTTATTTCTAAAATAGTGAATTTCAGAACAAAAAGTCTGCACTAAATGAACAATATTATATAAATTTTGATAAATTTATAACTCTAGCATTGAAACTATTTGTAACA
Unaligned ( gi|12 ): TCACTCTTCCACGCTCCGCCCACTGATGGCAACGTCACACACGTGTTTACAGACTCCGTCAACTTACATGTAAACAACATGGCGAGCGATGTCGATCTTGCACCGGGTATATTGTTAATCGTCCCGTTTGACAACGAATTTTCACAGAAAAGTTTGTCAAATGATCTGACATACTTCAGAGAAAGTTACTTACGTTCACAAAATTTCACTGACTAAAA
Unaligned ( gi|13 ): CCCCACCCCCCCCCCCCCCCCCCCCCCCCCCCCCTCCCCCCCCCCCCCCCCCCCCCCCCCCCCTTTTCACCTACATATTTATAGTACATGTATTGATAACATGAAAGGTATATTATTGCAATTGATATCACAATATTTACGTATTCTAATAACAACCTTGACCTTATTGACTTAGAAATTGATGCGTAGCATCATATCT
Unaligned ( gi|14 ): CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCACGCCCCCCCCCCCCCTTTAATTTGTGCCAACTTCTTAAAAGTATACTTTTATCATACTTGCATATCATTTTTTATTTTAACATTTCAATATAAATTCATCAATCTTTATTTCATAATTAAT
Unaligned ( gi|16 ): CCCCCGCCACCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCTTAAGTATTTCACAATACACATTCACACCGAATAAATATATCTGTATTGACAAAGTTCGTTGATATCACGGAGAAATAT
Unaligned ( gi|17 ): ACTCTTTCCACGCTCCGCCCACTGATGGCAACGTCAGCACGCGTGTTTACAGACTCCGTCAACTTTACACTGTAAAACAACATGGCGATCATGTCGAATCTTGCACGGGTCATC
Unaligned ( gi|18 ): ACTCTTCCACGCTCCGCCCACTGATGGCAACGTCACTCACGTGTTTACAGACTTCGTCAGCTTACATGTAATTAACATGGCGAACGATGTCAATCGTGCATCGGGTACC
Unaligned ( gi|19 ): TTGGTATAAGTTTTTTCTATTGTAAATAGATATATTGTTTTTGCTGGTAAAAGGAATATCTTGTTGATAGGTTGGATCTATTATAAACTGG
Unaligned ( gi|20 ): GATTTAAAAATGTTTAGTTAAAAAATCCTGAATAAAATAGGTATATATTTGCTGCGTTACCGTTCCACTTATAAATGTTTCATTGCTTTC
Unaligned ( gi|21 ): CCCCCCCCCCCCCCCCCCCCCCTCAGCTAAATTCACCCAGATCTGTGGTTATAATTGGTAAGAAAAGTTTAGTGGATATCTCAATA
Unaligned ( gi|22 ): CCCCCCCCCCCCCCCCCCCTTTTTACCCTCAGCGGGATATTTTTTTATTGACATTGTATTAGATAAATTTTGGAAGGTAT
Unaligned ( gi|24 ): CACTCTTCCACGCTCCGCCCACTGGAGGCAACGTCACACACGATGTTTACAGACTCCGTACAACTTACATG
Unaligned ( gi|25 ): ATTCACTCTTCCACGCTCCGCCCACTCCGTCAACTTACATGTAAACAACATGG