lowQualScore : 333333 222222 6666666666666666666666666666666666666666666 222222 33333 444 11111 11111 222222 11111 888888888888888888888888888888888888888888888888888888888888888888888888 11 33333 6666666666666666666666666666666666666666666666666666666666666666666666666666 1 22 222 22222222 1 99999999999999999999999999999999999999999999999999999999 1111 33333 2222222 111111 555555555555555 11 7777777777777777777777777777777 111 11 1 11 88888888888888888888888888888888888888888888888 1 1 33333 444444444 4
lowQualScore : 66 66 2 111111 55 55 1 777777 4 7777777777777777777777777777777777777777777 3 4 55 0 888 3 999999 3 44 3 55 3 33333 66 0 4 4 222 11111 11111 444444 5 44444 333333333333333333333333333333333333333333333333333333333333333333333333 33 44444 77 9999999999999999999999999999999999999999999999999999999999999999999999999999 44 3 22 222 11111111 0 3 00000000000000000000000000000000000000000000000000000000 0 5 4444 8 44444 6 6666666 8 333333 88 222222222222222 888 88 9 3 99999 33 3 3 6666666666666666666666666666666 777 33 0 33 11111111111111111111111111111111111111111111111 0 7 3 6 33333 999999999 0
lowQualScore : .. .. . ...... .. .. . ...... . ........................................... . . .. . ... . ...... . .. . .. . ..... .. . . . ... ..... ..... ...... . ..... ........................................................................ .. ..... .. ............................................................................ .. . .. ... ........ . . ........................................................ . . .... . ..... . ....... . ...... .. ............... ... .. . . ..... .. . . ............................... ... .. . .. ............................................... . . . . ..... ......... .
lowQualScore : 11 11 2 444444 55 55 0 888888 0 7777777777777777777777777777777777777777777 5 0 55 5 777 3 999999 3 66 3 66 6 11111 99 1 4 4 111 11111 11111 555555 0 33333 444444444444444444444444444444444444444444444444444444444444444444444444 66 11111 99 1111111111111111111111111111111111111111111111111111111111111111111111111111 77 3 77 555 22222222 0 5 33333333333333333333333333333333333333333333333333333333 8 6 8888 0 22222 0 2222222 0 666666 88 888888888888888 888 88 0 8 88888 88 2 2 5555555555555555555555555555555 000 88 0 22 00000000000000000000000000000000000000000000000 0 3 3 7 33333 555555555 0
consensus : CGAAATAGAT--AG--TAGTT--TT--G--TAG--GTATA---NTTCTAT-GC-AAA-A---TT-TG-GA-ATTG--AACC----AT-TG-AA-GTTTAGAT-T--CCTG-G-GTTATTTTG-AAGGGAA------GC-TCAAAT--ATTT-TG-T-TCCAT--TACTGC-CATCACTGA-A-T---AAAA-----TAT-----TGTTTC-C----TT-CC-----CATTT-----T-----AGAAA--TAACAAGTTA-----GCAA-GTCC--CT-----TCTTT-T-CGTT-----AATAAAT--ATATTATACAT---TATC--TTT--ACANCCTG--C------TTNTG--T--T-TAT---AAA----TA-C--AGAAAA-TGGAAT-TT--GG---AG-TTTTTTGGTCCTATCGTC-TTT-AGTTT-TGTT--A-TTTCAT-TNATATCT-CA-TT-TTT-TTAACATTT-N-AA---TT-AC-TG-CTCTCTTAAGGCCA-C-GTATTCAACAAAATTTGT---TTCACTTT-TGAATTT-ATAAAGTATT--C--GAAACTT-AAGNAGGT-TACCAT-CATTT-G-TC-A-AA--AAG-ATCA-CATTACGAAGACCAAAACC--CTCATTAAATAA-----AGCTTTTC---------C-----AAAAAAAAGA--TTCT--TTG-TTTATCAT-AATAAGATGGGTCA-TT-CCA----TA--CGTGATCATAGAGA--AC---TTC-TTCGTCTTGA-ATTTT-----ATTTATAACGTCTTGATCCAGCTATCTGAGA
Reference ( gi|2 ) : CGAAATAAAT--AG--TAGTT--TT--G--TAG--GTATA---AT-CTAT-GCCAAA-A---TT-TGCGA-ATTGGGAAGC----AT-TG-AATGTTTAGAT-T--CCTG-G-GTTATTTTG-AAGGGAA-----AGC-TCAAAT--ATTT-TG-T-TCCATT-TACTGC-CATCACTGA-A-TTAAAAAA-----TAT-----TGTTTC-T----TT-CC-----CATTT-----T-----AGAAA--TAACAAGTTA-----GCAA-GTCC--CT-----TCTTT-T-CATT-----AATGAAT--ATATTATACAT---TATC--TTT--A-ATCCTG--C------TTGTG--T--T-TAT---AAA----TA-C--AGAAA--TGGAAT-TT--GG---AT-TTTTTTGGTCCTATCATC-TTTTAGTTT-TGTT--A-TTTCAT-TAATATCTGCA-TT-TTT-TTAACATTT-T-AA---TTTAC-TG-CTCTCTTAAGGCCA-T-GTATTCAACAAAATTTGT---TTCACTTT-TGAATTT-GTAAAGTATT--C--AAAACTT-AAGAAAGT-TACCAT-CATTT-G-TC-A-AA--AAG-ATCA-CATTACAAAGACCAAAACC--CTCATTAAATAA-----AGCTTTTC---------C-----AAAAAAAAGA--TTCT--TTG-TTTATCAT-AATAAGATGGGTTA-TTCCCA----TATTTATGATCATAGAAA--AC---TTC-TTTGTCTTGA-ATGTT-----ATTTATAA--TCTT-ATTCAGCTATCT-AGAAT
gi|11 : CGAAATAAAT--AG--CAGTT--T---G--TAG--GGACA---ATTCTAT-GC-AAA-A---TT-TG-GA-ATTG--AAGC----GCGTG-AA-GTTTAGAT-T--CCTG-G-TTTATTATA-AATGGAA------GC-CCAAAT--ATTT-TG-T-TCCA---TACTG--CATCACTTA-A-T---AAAA-----TAT-----TGTTTTAT----TT-C
gi|9 : GAAATAAAT--AG--TAGTT--T---G--TAG--GTATA---ATTCTAT-GC-AAA-A---TT-TG-GA-ATTG--AAGC----CTGTG-AA-GTTTAGAT-C--CTTG-G-GTTATTTTG-AAGGGAA------GC-TCAAAT--ATTT-TG-T-TCCAT---ACTGC--ATTACTGA-A-T---AAAA-----TAT-----TGTTTC-C----TT-TC-----TATTT-----------AGAAA--TA-CAAGTTA------CAA-GTCC--TT-----TCTTT-T-CATT-----ACTAAAT--ATAATATACA----TATC--aat
gi|13 : GAAATAGAT--TG--TAGTT--T---G--TAG--GTATA---CTTCTAT-GC-AAA-T---TT-TG-AA-ATTG--AAGCC---AG-TG-AA-ATTTAGAT-T--CTTG-G-GTTATTTTG-AAGGG-A-----AGT-TCAAAT--ATTT-TT-T-TCCA---TACTGT-Cata
gi|4 : AAAAAGAT--AA--TTGTTAGTT--G--GGG--AT-TA---TT-CTAT-G---AA-G---TA-TCTGATATTGT-AACC----AT-GA-AAT-TTT-GAC-T--CTTT-T-GTTATTTTA-AAAGGAA------GC-TCGAAT--ATTT-TA-T-TCCATT---CTAC-C-TCATTGACA-TTCACCA-----------------TTC-T----CCATC-----CATTT-----TGATACAGAAG--TGA----TTG-----GTA----CC--TT-----TTTTTAT-CATT-----AA--A----ATATTGTACA----AATC--TTTGCA-ACCCT----------TTTTA--C--T-TGT---AAAGAATTA-T--AGAAAATTG--AT-TTAGGG---A---TGAATGGTTTAATTGTCTTTTTAATTTCTCTT--A-T---AT-TTACATGTCCAGTT-CTT-TCAA--------------TGAC-AGCCTGTTTTAGACCCG-C-AAATTCTACAATATTTGT---TTTATACC-TGAA-TC-ACAAAG-GTT--CTGGAAGCTT-TTG-AAGT-TGCCAT-CA----GAAC-A-AA--ACG-ATCA--ATTACATAT-CTTATACCGGCTC-TGAAATAA--------CTTTA---------T-----AGAAGATAGA----AT--TTG-TTTATTTT-AAT-ATTTGGATTA--TACCA----TA--CATGCTCAAAGGGG--CCTAATTC-TTCG--TTAG-ATGCTTCAGCGTTTATAA--TTTTGATCCAGCc
gi|6 : AAAAAGAT--AA--TTGTT--A---G--TGG--GAATT---ATTCTAT-G--AAGCA---TC-TG-AA-ATTGT-AACC----AT-TG-AA-ATTTTGAA-T--CTTG-T-GGTATTTTA-AACGGA-------GC-TCGAAA--ATTT-TA-T-TCCATTCTACTgaaaa
gi|16 : tAAAAAGAT--AA--T-GTT--TA--G--TGG--GGATA------TTAT-G---AA-G---TTATCTGATATTGT--ACC----AT-TG-AA-GTTTTGAC-T--CTTT-T-GTTATTTTA-AAAGGAA------GC-TCGAAT--ATTT-Ttctccattttccacccattttgatacagaagagataggtacctttttatctatcaaaacatttcaatcccttttgttttcttgtttttttaaagaatatagcaattgctttagggatgggtaacttaattttcctttt
gi|3 : ttAATAAATTAAGATCAGTT--TTTTGATTAG--GTATA---ATTCTATTGCAAAA-AAATTT-TG-GA-ATTGAAAGCC----AG-TG-AGT-TTTAGAT-TTTCGTG-GCGTTATTTTG-AAGG--A-----AGC-TCAA-T--ATTT-TGAT-TCC----TACTGC-CATCACTGA-A-T---AAAA-----TAT-----TGTTTtattcaa
gi|5 : cccgTAAAT--AG--TAATT--AC--A--TGG--AAATA---TT-CTGT-GT--AA-A---TT-TGAAA-CTT---ATCC----AC-TG-TAT-TTTAGAT-T--CCTG-A--TTGTTTTA-AAAGGAA------GT-TCAAAC--ATAT-TT-T-TCCATT------C-TAACTCTG--------AAAACCTCCTCC-----TGTTTC------TT-CC-----CATTT-----T------GATA--T---GAGTT-------TAA-TTCTGGTT-----ACTTT-A-TGTT------ATCAAT--AGCTTATACA----TATC--TTT--ACAGCCT---T------TTTTG--T--T-TTTG--AAA----TA-T--Atcattcattnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncttacatatacatatctttacatcctgtacttatagttttataaataacagaaatggaatttggggattttttggtcctatcatcttagtttgtttaatttcatataatatttttttatatttaaaaattttattgtattcacaaactttgtctcttcacttttgaattttataaagaattatcaaaacttaaataagtgtaccattcatttgcaacaaggcacaatacaagacaaaaccctcattaaattgcttttccaaaaaaaggattcttattgtttatcataaataagtggtcattccataacttctttgtcttgaattttatttaacaagt
gi|8 : tatgTAAAT--AG--TAATTACTT--G--GAA--ATAT-----T-CTGT-GT-AAA-A---TT-TG-AA-ACT---AATCC---AC-TG-CA-ATTTAGAT-T--CCTG-A-GTAGTTTTGTAAGG--A-----AGT-TC-AAC--ATTT-TC-T-TTC---------C-AATCA--AA-ATTTGAGCAA-----TATCATTCTGTTTC------TT-CC-----CATTTGGATAT-----AGATA--TAAT--GTTG-----G----------CT-----ACTTTAT-GGTT-----TATCAAT--AGACTATACAT---GATC--ttaaatagtagatgaattataggtaaatgtggccttacagccttattttgtcctgtaaaaaaaatgtctttgttgaattacttgctttaagcctgcatattctataaatattatttt
gi|1 : GTT--TTA-G--TAGTCGTATACAAGT-CTAT-CTCAAA-A---TT----GA-ATTTG-AAGCCATAGT-TGTAACGCTTCTATAT--CCTGTG-GTT----TG-GAGAGAAGCGAGAGCCTCACATTAATTTGTG-TGTCCATA-GGCTGCGCATCACTGG-A-TAAAATAA-----TTT-----AGTTTC-TATTGTT-CGATATGTACTT-----T-----AGAAAATTCACATGCTTTTCGTGCAATGTTC--CCACCTATCTTT-TACATTTCGCTAATAAATT-ACATTGTATATACATATCGGTTT--A-CACGTG--CCTTCTTTTGTG--TGGTGTATCTAAAA----TA-CTCAGAAAA-TGGAATATT--GGGAAAG-TCTTTTGGTCCTCTTCTC-TTT-GGTT---GTT--A-ATT-AT-TCATATC---A-TTATTTATTAACATTT-CCAA---T--ACGTG-CTCTCT-AAGGCCACT-GTATTCAACAAA--TTGT---TTTCCTTT-TGTA------AAAGTATT--C----AATCT-AAGCAGTT-TACCAT-CAGTGAG-TC-ATAATCAAGAATCA-CATAGCAAAGA-CAAACCC--CTCATT-AATAATTATTAGCTTTTCTCCAATAAGT-----AAACAAAAGAATTTCT--TTGTTTTATTA--GATATGAAGGGTTATTTCTCAACGCTAT---TGATCATAGAAAATAC---TTCTTTTGTCTTGACATTTT-----ATTTATAACGTC-T-A-TCAGCTATCTGAGAatagcttaaca
gi|14 : aaggtcatgggctTTTTG-AAGGGAA------GT-TCAAAT--ATTT-TG-T-TCCATT---CTG--CATCAATGA-A-T---GAAA-----TAT-----AGTTTT-C----TT-TC-----CATTT-----T------GAAA--T-ACAAGGTA-----TCGG-CTCC------------TT-T-AATT-----AAT-AATTAATATTGTgatattcctttctcctataaaacatctgttatataagtgctcctgg
gi|18 : TTTTG-AAGGGAA------GT-TCAAAT--ATTT-TT-T-TCCA---TACTG
gi|15 : -CATCGCTAA-A-T---GAAA-----TAT-----TGTTTT-C----TT-TC-----CATCT-----------AGAAA--TA-CAAGTAA-----ACAT-GTCC--CT-----TC-------ATT-----AATAAAT--ATATTATACA----TATC--TTT--A---CCTC--C------Tt
gi|3 : tttttttttcgtatgggTATACAT----ATC--TTT--ACATCCTGTAC------TTATAGTT--T-TAT---AAA----TAAC--AGAAA--TGGAAT-TT--GG---GGATTTTTTGGTCCTATCATC-TT--AGTTT--GTTTAA-TTTCATATAATAT-------T-TTT-TTA-TATTT-A-AAAATTTTAT-TG-------------------TATTCA-CAAACTTTGTCTCTTCACTTT-TGAATTTTATAAAGAATTATC--AAAACTT-AAATAAGTGTACCATTCATTT-G--C-A-AC--AAG-G-CA-CAATACAA-GAC-AAAACC--CTCATTAAATT-------GCTTTTC---------C-----AAAAAAAGGA--TTCTTATTG-TTTATCATAAATAAG-T-GGTCA-TT-CCA----T----------------A--AC---TTC-TTTGTCTTGA-ATTTT-----ATTTA
gi|7 : cccgaataaattaagatcagttttttgattaggtataattctattgcaaaaaaattttggaattgaaagccagtgagttttagattttcgtggcgttattttgaaggaagctcaatattttgattcctactgccatcactgaataaaatattgttttcattcattnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncttacaT-TGTT--AATTTCAT-TAATATCTGTA-TT-TTT-T-AGCATTTCT-AA---T--AG-TG-CTCTCTTAAGGCCA-CAGTATTCAAAAAAATTTAT---TTCACCTA-TGAATTT-GTAAAGTATT--C--AAAACTT-AAGAAG---TACCAT-CA-TT-G-TCAA-AA--AAG-ACC--CA-TACGAAGACCAAAACC--CTCATTAAA-AT-----AGC-TTTC---------CAGAAAAAAAAAAAGA--TTCT--TTG-TTGATCAT-AAT---ACGGATCA-TT-CCA----TA--TGTGATCATGGAGA--AC---TTA-TTacaagt
gi|17 : CTA-T-GTATGTAACGTAATTTG----TTCACTTTCTGGAT----TAAGATATT--C------CTTCAAGAGGGT-CACCA--CATT----TC-------AAG-GTCACCACT-CGAA-ACCAAAgt
2 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|10 ): GTATAATAGTAACACATGGAATTTATTGTGTAAGGTTGAATACATGCACACCCACTGTATAATATTAGATTAAATCTGGTCTTGTCCTTTAAAGAGGTTTCAAAAATTATTTTTCAACTCTAAAGTAAAAAACCTCTTCTCTTTCATTTT
Unaligned ( gi|12 ): TTTCTATGATAGCCTGCCTTAGACCAAAATATTCTACAATGTTTGTTTTCATACCTGAATCACAAAGTGCCTGAACGCTTTTGAAGTTGCCATCAGAATCAAACAGATCAACTCATA
Alignments
lowQualScore : 2222 1111111 111111 11111 1111111 22222 11 11111 111111 11111 111111111111 4444444444444444444444444444444444 1111111 1 22222 1111 222 222222222222222 1111 1111 1 3333333333333333 11 11 11111111 44444444444444444 111 1 1111 111 111111 111111 33333333 1 11 3333333 555555555 111 11 1111 3333333333333 111111 11 1 11 111 33 22 1 1
lowQualScore : 55 3 4 4444 55 2 66 3 999 0000000 3 3 333333 66666 44 0 55 3 777 2 3 0000000 2 44 2 55 3 00000 11 8888 4 777 00000 4 55 8888 444444 1 11111 3 999999999999 66 9999999999999999999999999999999999 5 4444444 0 0 77777 66 2222 666 1 444444444444444 7777 5555 0 6 8 6666666666666666 1 22 11 88 99 11111111 6 1 77777777777777777 1 333 1 5 6 3 3 1111 0 5 333 0 5 0 555555 1 999999 5 5 1 9999 5 66666666 5 77 5 55 5 55 2 2 6 9 11 0 11 1111111 3 222222222 111 11 8 88 7777 8 4444444444444 0 1 1 555555 22 3 0 33 777 00 22 2 5
lowQualScore : .. . . .... .. . .. . ... ....... . . ...... ..... .. . .. . ... . . ....... . .. . .. . ..... .. .... . ... ..... . .. .... ...... . ..... . ............ .. .................................. . ....... . . ..... .. .... ... . ............... .... .... . . . ................ . .. .. .. .. ........ . . ................. . ... . . . . . .... . . ... . . . ...... . ...... . . . .... . ........ . .. . .. . .. . . . . .. . .. ....... . ......... ... .. . .. .... . ............. . . . ...... .. . . .. ... .. .. . .
lowQualScore : 55 6 6 9999 00 3 00 6 333 5555555 6 6 666666 44444 00 3 00 6 000 6 1 0000000 0 22 9 22 1 99999 00 5555 0 000 00000 0 55 0000 666666 4 11111 6 222222222222 99 2222222222222222222222222222222222 0 6666666 4 0 66666 99 7777 000 0 222222222222222 0000 4444 6 0 0 2222222222222222 0 88 00 66 88 00000000 7 0 55555555555555555 0 555 4 7 6 6 0 2222 8 2 888 6 7 1 333333 7 111111 7 7 0 7777 7 11111111 7 99 7 99 7 22 0 5 7 3 00 8 66 6666666 8 000000000 888 00 0 88 6666 0 4444444444444 6 0 4 000000 00 2 0 88 555 00 33 0 0
consensus : CGAAAT--AGAT-AGTAGTT--TTG--TAGGNATAATTCTA-TG-C-AAA--A----TTTG-GAATT-G--AA--CCAT-----TGAA-GTTTAGA--T-TCCTG-G-GTTATTTTGAAGGGAA-GC-------TCAAAT--ATTT-TG-T-TCCAT-T-ACTGC-CATCA----CTGA-AT---AAAA-----T-A--T--T-GTTTCC----TTCC-----CATTT-----T-----AGAAA--T-ACAAGTTA-----GCAA-GTCC--CT-----TCTTT-T------CGTTAATAAAT-ATATTATACAT---TATC--TTTACAN---CCTG--CTTTTG--T----T-TAT---AAA----TA-C--AGAAAATGGAAT-TTGG---AG-TTT-------TTTGGTCCTATCGTC--TTT-AGTTT-TGTT--A-TTTCAT-TAATATCT-CATT-TTT-TTAACATTTCAATT-AC-TG-CTCTCTTAAGGCCGC-G-TATTCAACAAAATTTGT---TTCACTTT-TGAATTT-ATAAAGTATT--C--GAA-ACTT-AAGAAGGT-TACCAT-CATT--G--TCA-AA--AA-GA-TCA-CATTACGAAGA-CCAAAACC--CTCATTAAATAA-----AGCTTTTCC--AA-----AAAAAAAAGA--TTCT--TTGTTT-ATCAT-AATAAGATGGGTTATT-CC--ATA--CG----TGATCATAGAGAA--C---TTCTTT-GTCTTGA-AT--TTTA---TTTATAA--TCTT-ATCCAGCTATCTGAGA
Reference ( family-1001 ) : CGAAAT--AGAT-AGTAGTT--TTG--TAGGTATANTTCTA-TG-C-AAA--A----TTTG-GAATT-G--AA--CCAT-----TGAA-GTTTAGA--T-TCCTG-G-GTTATTTTGAAGGGAA-GC-------TCAAAT--ATTT-TG-T-TCCAT-T-ACTGC-CATCA----CTGA-AT---AAAA-----T-A--T--T-GTTTCC----TTCC-----CATTT-----T-----AGAAA--TAACAAGTTA-----GCAA-GTCC--CT-----TCTTT-T------CGTTAATAAAT-ATATTATACAT---TATC--TTTACAN---CCTG--CTTNTG--T----T-TAT---AAA----TA-C--AGAAAATGGAAT-TTGG---AG-TTT-------TTTGGTCCTATCGTC--TTT-AGTTT-TGTT--A-TTTCAT-TNATATCT-CATT-TTT-TTAACATTTNAATT-AC-TG-CTCTCTTAAGGCCAC-G-TATTCAACAAAATTTGT---TTCACTTT-TGAATTT-ATAAAGTATT--C--GAA-ACTT-AAGNAGGT-TACCAT-CATTT-G--TCA-AA--AA-GA-TCA-CATTACGAAGA-CCAAAACC--CTCATTAAATAA-----AGCTTTTCC---------AAAAAAAAGA--TTCT--TTGTTT-ATCAT-AATAAGATGGGTCATT-CC--ATA--CG----TGATCATAGAGAA--C---TTCTTC-GTCTTGA-AT--TTTA---TTTATAACGTCTTGATCCAGCTATCTGAGA
gi|1 : T-AGTAGTC----G--TA--TACAAGTCTA-TCTC-AAA--A----TT---GAATTTG--AAG-CCATAGTTGTAAC-GCTTCTA--TATCCTGTG-GTT----TGGAGAGAA-GCGAGAGCCTCACATTAATTTGTG-TGTCCATAG-GCTGCGCATCA----CTGG-AT---AAAA-----T-AATT--TAGTTTCTATTGTTCGATATGTACTT-----T-----AGAAAATTCACATGCTTTTCGTGCAATGTTC--CCACCTATCTTT-TACATTTCGCTAATAAATTACATTGTATATACATATCGGTTTACACGTGCCTT--CTTTTG--TGTGGTGTATCTAAAA----TA-CTCAGAAAATGGAATATTGGGAAAG-TCT-------TTTGGTCCTCTTCTC--TTT-GGTT---GTT--A-ATT-AT-TCATATC---ATTATTTATTAACATTTCCAAT-ACGTG-CTCTCT-AAGGCCACTG-TATTCAACAAA--TTGT---TTTCCTTT-TG----T-A-AAAGTATT--C----A-ATCT-AAGCAGTT-TACCAT-CAGTGAG--TCATAATCAA-GAATCA-CATAGCAAAGA-C-AAACCC--CTCATTAA-TAATTATTAGCTTTTCTCCAATAAGTAAACAAAAGAATTTCT--TTGTTTTATTA--GATATGAAGGGTTATT-TCTCA-A--CGCTATTGATCATAGAAAATAC---TTCTTTTGTCTTGACAT--TTTA---TTTATAACGTCT--AT-CAGCTATCTGAGA
gi|11 : aaggtcatgggctgtttCGAAAT--AAAT-AGCAGTT--T-G--TAGGGACAATTCTA-TG-C-AAA--A----TTTG-GAATT-G--AA--GCGCG----TGAA-GTTTAGA--T-TCCTG-G-TTTATTATAAATGGAA-GC-------CCAAAT--ATTT-TG-T-TCCA--T-ACTG--CATCA----CTTA-AT---AAAA-----T-A--T--T-GTTTTA----TTTC-----AATgatattcctttctcctataaaacatctgttatataagtgctcctgg
gi|12 : C-TG-C---CTTA-GACCAA-AATATTCTACAATGTTTGTT--TTCATACC-TGAA-TC-ACAAAGTGCC--T--GAACGCTT-TTGAA-GT-TGCCAT-CA----GAATCA-AA--CA-GA-TCA-
gi|13 : tttctatgatagcGAAAT--AGAT-TGTAGTT--T-G--TAGGTATACTTCTA-TG-C-AAA--T----TTTG-AAATT-G--AAG-CCAG-----TGAA-ATTTAGA--T-TCTTG-G-GTTATTTTGAAGGGAA-GT-------TCAAAT--ATTT-TT-T-TCCA--T-ACTGT-Cactcata
gi|14 : TTTTGAAGGGAA-GT-------TCAAAT--ATTT-TG-T-TCCAT-T--CTG--CATCA----ATGA-AT---GAAA-----T-A--T--A-GTTTTC----TTTC-----CATTT-----T------GAAA--T-ACAAGGTA-----TCGG-CTCC------------TT-T------AATTAATAATTAATATTGTc
gi|15 : TTT-TT-T-TTCGT---ATGGG-CATCG----CTAA-AT---GAAA-----T-A--T--T-GTTTTC----TTTC-----CA-TC-----T-----AGAAA--T-ACAAGTAA-----ACAT-GTCC--C----------T-T------CATTAATAAAT-ATATTATACA----TATC--TTTACCT---CCT
gi|16 : tAAAA--AGAT-AAT-GTT--TAG--TGGGGATATT---A-TG---AAGTTA----TCTG-ATATT-G--TA--CCAT-----TGAA-GTTTTGA--C-TCTTT-T-GTTATTTTAAAAGGAA-GC-------TCGAAT--ATTT-T
gi|17 : ttCTAT-G-TATGTAACGTAATTTG----TTCACTTTCTGGAT----TAAGATATT--C-------CTTCAAGAGGGT-CACCA--CATT-----TC------AA-GG-TCACCACT-CGAA-A-CCAAAtattcaa
gi|18 : TTTTGAAGGGAA-GT-------TCAAAT--ATTT-TT-T-TCCA--T-ACTG
gi|2 : CGAAAT--AAAT-AGTAGTT--TTG--TAGGTATAAT-CTA-TG-CCAAA--A----TTTGCGAATT-GGGAA--GCAT-----TGAATGTTTAGA--T-TCCTG-G-GTTATTTTGAAGGGAAAGC-------TCAAAT--ATTT-TG-T-TCCAT-TTACTGC-CATCA----CTGA-ATTAAAAAA-----T-A--T--T-GTTTCT----TTCC-----CATTT-----T-----AGAAA--TAACAAGTTA-----GCAA-GTCC--CT-----TCTTT-T------CATTAATGAAT-ATATTATACAT---TATC--TTTA-AT---CCTG--CTTGTG--T----T-TAT---AAA----TA-C--AGAAA-TGGAAT-TTGG---AT-TTT-------TTTGGTCCTATCATC--TTTTAGTTT-TGTT--A-TTTCAT-TAATATCTGCATT-TTT-TTAACATTTTAATTTAC-TG-CTCTCTTAAGGCCAT-G-TATTCAACAAAATTTGT---TTCACTTT-TGAATTT-GTAAAGTATT--C--AAA-ACTT-AAGAAAGT-TACCAT-CATTT-G--TCA-AA--AA-GA-TCA-CATTACAAAGA-CCAAAACC--CTCATTAAATAA-----AGCTTTTCC---------AAAAAAAAGA--TTCT--TTGTTT-ATCAT-AATAAGATGGGTTATTCCC--ATATTTA----TGATCATAGAAAA--C---TTCTTT-GTCTTGA-AT--GTTA---TTTATAA--TCTT-ATTCAGCTATCT-AGAt
gi|3 : AAATTAAGATCAGT-TTT--TTGATTAGGTATAATTCTATTG-C-AAA--AAAATTTTG-GAATT-G--AAAGCCAG-----TGAG-TTTTAGATTT-TCGTG-GCGTTATTTTGAA-GGAA-GC-------TC-AAT--ATTT-TGAT-TCC---T-ACTGC-CATCA----CTGA-AT---AAAA-----T-A--T--T-GTTTTCA---TTCat
gi|3 : cccgaatTATACAT----ATC--TTTACAT---CCTGTACTTATAGTT----T-TAT---AAA----TAAC--AGAAA-TGGAAT-TTGG---GGATTT-------TTTGGTCCTATCATC--TT--AGTTT--GTTTAA-TTTCATATAATAT------T-TTT-TTA-TATTTAAA---AA-T---TTTATT---------G-TATTCA-CAAACTTTGTCTCTTCACTTT-TGAATTTTATAAAGAATTATC--AAA-ACTT-AAATAAGTGTACCATTCATTT-G---CA-AC--AA-GG--CA-CAATAC-AAGA-C-AAAACC--CTCATTAAATT-------GCTTTTCC---------AAAAAAAGGA--TTCTTATTGTTT-ATCATAAATAAG-T-GGTCATT-CC--AT--------------------AA--C---TTCTTT-GTCTTGA-AT--TTTA---TTTAattnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncttacatatacatatctttacatcctgtacttatagttttataaataacagaaatggaatttggggattttttggtcctatcatcttagtttgtttaatttcatataatatttttttatatttaaaaattttattgtattcacaaactttgtctcttcacttttgaattttataaagaattatcaaaacttaaataagtgtaccattcatttgcaacaaggcacaatacaagacaaaaccctcattaaattgcttttccaaaaaaaggattcttattgtttatcataaataagtggtcattccataacttctttgtcttgaattttatttaacaagt
gi|4 : cccgaataaattaagatcagttttttgattaggtataattctattgcaaaaaaattttggaattgaaagccagtgagttttagattttcgtggcgttattttgaaggaagctcaatattttgattcctactgccatcactgaataaaatattgttttcattcattnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncttacaAAAA--AGAT-AATTGTTAGTTG----GGGATTATTCTA-TG-A-AGT--A----TCTG-ATATT-GT-AA--CCAT------GAA-ATTTTGA--C-TCTTT-T-GTTATTTTAAAAGGAA-GC-------TCGAAT--ATTT-TA-T-TCCAT-T--CTAC-C-TCA----TTGACAT---TCAC-----C-A--T-----TCTCC----AT-C-----CATTT-----TGATACAGAAG--TGA----TTG-----GTA-----C--CT-----T-TTT-T------TATCATTAAA--ATATTGTACA----AATC--TTTGCAA---CCC---TTTTTA--C----T-TGT---AAAGAATTA-T--AGAAAATTG-AT-TTAG---GG-ATG-------AATGGTTTAATTGTCTTTTT-AATTTCTCTT--A-T---AT-TTACATGTCCAGT-TC--------TTTCAATG-AC-AGCCTGTTTTAGACCCGC-A-AATTCTACAATATTTGT---TTTATACC-TGAA-TC-ACAAAG-GTT--CTGGAA-GCTT-TTGAA-GT-TGCCAT-CA----GA-ACA-AA--AC-GA-TCA--ATTAC--ATATCTTATACCGGCTC-TGAAATAA--------CTTTAT---------AGAAGATAGA----AT--TTGTTT-ATTTT-AAT-ATTTGGATTATA-CC--ATA--CA----TGCTCAAAGGGGC--CTAATTCTTC-G--TTAG-ATGCTTCAGCGTTTATAA--TTTTGATCCAGCacaagt
gi|5 : T--AAAT-AGTAATT--ACA--TGGAAATA-TTCTG-TG-T-AAA-------TTTG-AAACT-T--AT--CCAC-----TGTA-TTTTAGA--T-TCCTG-A--TTGTTTTAAAAGGAA-GT-------TCAAAC--ATAT-TT-T-TCCAT-T-----C-TAACT----CTG-------AAAACCTCCT-C--C--T-GTTT-C----TTCC-----CATTT-----T------GATA--T---GAGTT-------TAA-TTCTGGTT-----ACTTT-A------TGTT-ATCAAT-AGCTTATACA----TATC--TTTACAG---CCT---TTTTTG--T----T-TTTG--AAA----TA-T--ATTAAATAGTAG-ATGA---AT-TATAGGTAAATGTGGCCTTACAGCC--TT---ATTT-TGTC--C-TGTAAA-AAAAATGT-C------T-TTG----TTGAATT-ACTTG-CT---TTAAGCCTGC-A-TATTCTATAAATATTAT---TTgaaaa
gi|6 : tatgAAAA--AGAT-AATTGTT--A-G--TGGGAATTATTCTA-TG-A-AGC--A----TCTG-AAATT-GT-AA--CCAT-----TGAA-ATTTTGA--A-TCTTG-T-GGTATTTTAAACGG-A-GC-------TCGAAA--ATTT-TA-T-TCCAT-T-t
gi|7 : tT-TGTT--AATTTCAT-TAATATCTGTATT-TTT-T-AGCATTTCTAAT-AG-TG-CTCTCTTAAGGCCACAG-TATTCAAAAAAATTTAT---TTCACCTA-TGAATTT-GTAAAGTATT--C--AAA-ACTT-AAGAAG---TACCAT-CATT--G--TCA-AA--AAAGA-CC--CAT-ACGAAGA-CCAAAACC--CTCATTAAA-AT-----AGC-TTTCCAGAAA----AAAAAAAAGA--TTCT--TTGTTG-ATCAT-AAT---ACGGATCATT-CC--ATA--TG----TGATCATGGAGAA--C---TTATTctacttctccattttccacccattttgatacagaagagataggtacctttttatctatcaaaacatttcaatcccttttgttttcttgtttttttaaagaatatagcaattgctttagggatgggtaacttaattttcctttt
gi|8 : T--AAAT-AGTAATTACTTG--GAAATAT---TCTG-TG-T-AAA--A----TTTG-AAACT-A--AT--CCAC-----TGCA-ATTTAGA--T-TCCTG-A-GTAGTTTTGTAAGGAA-GT-------TC-AAC--ATTT-TC-T-TTC---------C-AATCAAAATTTGA-GC---AATA-----TCA--TTCT-GTTT-C----TTCC-----CATTTGGATAT-----AGATA--TAAT--GTTG-----G----------CT-----ACTTTAT------GGTTTATCAAT-AGACTATACAT---GATC--gt
gi|9 : GAAAT--AAAT-AGTAGTT--T-G--TAGGTATAATTCTA-TG-C-AAA--A----TTTG-GAATT-G--AA--GCCTG----TGAA-GTTTAGA--T-CCTTG-G-GTTATTTTGAAGGGAA-GC-------TCAAAT--ATTT-TG-T-TCCA--T-ACTG--CATTA----CTGA-AT---AAAA-----T-A--T--T-GTTTCC----TTTC-----TA-TT-----T-----AGAAA--T-ACAAGTTA------CAA-GTCC--TT-----TCTTT-T------CATTACTAAAT-ATAATATACA----TATC--atagcttaaca
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|10 ): GTATAATAGTAACACATGGAATTTATTGTGTAAGGTTGAATACATGCACACCCACTGTATAATATTAGATTAAATCTGGTCTTGTCCTTTAAAGAGGTTTCAAAAATTATTTTTCAACTCTAAAGTAAAAAACCTCTTCTCTTTCATTTT
Alignments
lowQualScore : 2222 1111111 111111 222222 1111111 22222 111111111111111 111111 11111 1 333333333333333333333333333 11111111 11 22222 1111 222 1111111 111 1111 1111 1 3333333333333333 11 11 1111 1 444444444444444444 111111111 1 111 111111 111111 222222 1 11 3333333 5555555555555 111 11 1111 3333333333333 111111 1 1 11 111 11 1 1 1
lowQualScore : 55 3 4 4444 55 1 6 3 999 0000000 3 3 333333 000000 44 0 3 55 777 3 0000000 44 2 55 3 33333 99 7777 3 6666 000000000000000 111111 0 00000 2 777 2 0 777 4 4 0 888888888888888888888888888 4 66666666 00 777 22222 66 00 1111 000 6666666 6 888 6 4444 3333 1 6 8 6666666666666666 1 22 11 88 99 0000 0 6 6 444444444444444444 1 666666666 5 1 2 2 1 0 5 333 0 5 0 555555 1 999999 5 5 9999 5 555555 9999999 55 5 6 1 2 2 6 9 11 0 11 1111111 0 0 6666666666666 111 11 8 88 7777 8 4444444444444 0 1 1 555555 0 3 0 33 777 88 7 3 2 5
lowQualScore : .. . . .... .. . . . ... ....... . . ...... ...... .. . . .. ... . ....... .. . .. . ..... .. .... . .... ............... ...... . ..... . ... . . ... . . . ........................... . ........ .. ... ..... .. .. .... ... ....... . ... . .... .... . . . ................ . .. .. .. .. .... . . . .................. . ......... . . . . . . . ... . . . ...... . ...... . . .... . ...... ....... .. . . . . . . . .. . .. ....... . . ............. ... .. . .. .... . ............. . . . ...... . . . .. ... .. . . . .
lowQualScore : 55 6 6 9999 00 0 5 6 333 5555555 6 6 666666 333333 00 3 6 00 000 1 0000000 22 9 22 1 55555 22 7777 6 9999 888888888888888 555555 4 00000 3 888 8 1 888 4 4 8 777777777777777777777777777 4 33333333 88 000 66666 11 99 0000 000 8888888 7 333 7 2222 8888 7 0 0 2222222222222222 0 88 00 66 88 8888 8 7 7 888888888888888888 0 555555555 2 0 5 2 4 8 2 888 6 7 1 333333 7 111111 7 7 7777 7 333333 6666666 99 7 0 7 0 5 7 3 00 8 66 6666666 8 8 4444444444444 888 00 0 88 6666 0 4444444444444 6 0 4 000000 0 2 0 88 555 33 3 3 0 0
consensus : CGAAAT--AGAT-AGTAGTT--TTG--TAGGNATAATTCTAT-G-C-AAA--A----TTTG-GAATT-G--AA--CCAT-----TGAA-GTTTAGAT-T--CCTG-G-GTTATTTTGAAGGGAA-GC-------TCAAAT--ATTT-TG-T-TCCAT-T-ACTGC-CATCA----CTGA-AT---AAAA-----T-A--T--T-GTTTCC----TTCC-----CATTT---TAGAAA---TA-CAA-GTTA-----G-CAG-GTCC--CT-----TCTTT-T------CGTTAATAAAT-ATATT---ATACAT---TATC--TTTACAT---CCTG--CTTTTG--T----T-TAT---A-AA----TA-C--AGAAAATGGAAT-TTGG---AG-TTT-------TTTGGTCCTATCGTC--TTT-AGTTT-TGTT--A-TTTCAT-TA-ATATCT-CAT-T-TTT-TTAACATTTCAATT-AC-TG-CTCTCTTAAGGCCGC-GTATTCAACAAAATTTGT---TTCACTTT-TGAATTT-ATAAAGTATT--C--GAA-ACTT-AAGAAGGT-TACCAT-CA-TTG--TC-A-AA--AAGA-TCA-CATTACGAAGA-CCAAAACC--CTCATTAAATAA-----AGCTTTTC--C---AA-----AAAAAAAAGA--TTCT--TTGTTT-ATCAT-AATAAGATGGGTTATT-CC--ATA--CG----TGATCATAGAGAA--C---TTCTTT-GTCTTGA-AT--TTTA---TTTATAA--TCTT-ATCCAGCTATCTGAGA
Reference ( family-1001 ) : CGAAAT--AGAT-AGTAGTT--TTG--TAGGNATAATTCTAT-G-C-AAA--A----TTTG-GAATT-G--AA--CCAT-----TGAA-GTTTAGAT-T--CCTG-G-GTTATTTTGAAGGGAA-GC-------TCAAAT--ATTT-TG-T-TCCAT-T-ACTGC-CATCA----CTGA-AT---AAAA-----T-A--T--T-GTTTCC----TTCC-----CATTT---TAGAAA---TA-CAA-GTTA-----G-CAA-GTCC--CT-----TCTTT-T------CGTTAATAAAT-ATATT---ATACAT---TATC--TTTACAN---CCTG--CTTTTG--T----T-TAT---A-AA----TA-C--AGAAAATGGAAT-TTGG---AG-TTT-------TTTGGTCCTATCGTC--TTT-AGTTT-TGTT--A-TTTCAT-TA-ATATCT-CAT-T-TTT-TTAACATTTCAATT-AC-TG-CTCTCTTAAGGCCGC-GTATTCAACAAAATTTGT---TTCACTTT-TGAATTT-ATAAAGTATT--C--GAA-ACTT-AAGAAGGT-TACCAT-CA-TTG--TC-A-AA--AAGA-TCA-CATTACGAAGA-CCAAAACC--CTCATTAAATAA-----AGCTTTTC--C---AA-----AAAAAAAAGA--TTCT--TTGTTT-ATCAT-AATAAGATGGGTTATT-CC--ATA--CG----TGATCATAGAGAA--C---TTCTTT-GTCTTGA-AT--TTTA---TTTATAA--TCTT-ATCCAGCTATCTGAGA
gi|1 : T-AGTAGTC----G--TA--TACAAGTCTAT-CTC-AAA--A----TT---GAATTTG--AAG-CCATAGTTGTAAC-GCTTCTATAT--CCTGTG-GTT----TGGAGAGAA-GCGAGAGCCTCACATTAATTTGTG-TGTCCATAG-GCTGCGCATCA----CTGG-AT---AAAA-----T-AATT--TAGTTTCTATTGTTCGATATGTACTT---TAGAAAATTCA-CAT-GCTTTTCGTG-CAATGTTC--CCACCTATCTTT-TACATTTCGCTAATAAATTACATT---GTATATACATATCGGTTTACACGTGCCTT--CTTTTG--TGTGGTGTATCTAA-AA----TA-CTCAGAAAATGGAATATTGGGAAAG-TCT-------TTTGGTCCTCTTCTC--TTT-GGTT---GTT--A-ATT-AT-TC-ATATC---AT-TATTTATTAACATTTCCAAT-ACGTG-CTCTCT-AAGGCCACTGTATTCAACAAA--TTGT---TTTCCTTT-TG----T-A-AAAGTATT--C----A-ATCT-AAGCAGTT-TACCAT-CA-GTGAGTC-ATAATCAAGAATCA-CATAGCAAAGA-C-AAACCC--CTCATTAA-TAATTATTAGCTTTTCTCC---AATAAGTAAACAAAAGAATTTCT--TTGTTTTATTA--GATATGAAGGGTTATT-TCTCA-A--CGCTATTGATCATAGAAAATAC---TTCTTTTGTCTTGACAT--TTTA---TTTATAACGTC-T-AT-CAGCTATCTGAGA
gi|11 : aaggtcatgggctgtttCGAAAT--AAAT-AGCAGTT--T-G--TAGGGACAATTCTAT-G-C-AAA--A----TTTG-GAATT-G--AA--GCGCG----TGAA-GTTTAGAT-T--CCTG-G-TTTATTATAAATGGAA-GC-------CCAAAT--ATTT-TG-T-TCCA--T-ACTG--CATCA----CTTA-AT---AAAA-----T-A--T--T-GTTTTA----TTTC-----AATgatattcctttctcctataaaacatctgttatataagtgctcctgg
gi|12 : TATTCTACAATGTTTGTT--TTCATACC-TGAA-TC-ACAAAGTGCC--T--GAACGCTT-TTGAA-GT-TGCCAT-CA-GAA--TC-A-AA--CAGA-TCA-
gi|13 : tttctatgatagcctgccttagaccaaaaGAAAT--AGAT-TGTAGTT--T-G--TAGGTATACTTCTAT-G-C-AAA--T----TTTG-AAATT-G--AAG-CCAG-----TGAA-ATTTAGAT-T--CTTG-G-GTTATTTTGAAGGGAA-GT-------TCAAAT--ATTT-TT-T-TCCA--T-ACTGT-Cactcata
gi|14 : TTTTGAAGGGAA-GT-------TCAAAT--ATTT-TG-T-TCCAT-T--CTG--CATCA----ATGA-AT---GAAA-----T-A--T--A-GTTTTC----TTTC-----CATTT---T-GAAA---TA-CAA-GGTA-----T-CGG-CTCC------------TT-T------AATTAATAATTAATATT---GTc
gi|15 : TTT-TT-T-TTCGT---ATGGG-CATCG----CTAA-AT---GAAA-----T-A--T--T-GTTTTC----TTTC-----CA-TC---TAGAAA---TA-CAA-GTAA-----A-CAT-GTCC--C----------T-T------CATTAATAAAT-ATATT---ATACA----TATC--TTTACCT---CCT
gi|16 : tAAAA--AGAT-AAT-GTT--TAG--TGGGGATA---TTAT-G---AAGTTA----TCTG-ATATT-G--TA--CCAT-----TGAA-GTTTTGAC-T--CTTT-T-GTTATTTTAAAAGGAA-GC-------TCGAAT--ATTT-T
gi|17 : tt-GTATGTAACGTAATTTG----TTCACTTTCTGGAT----TAAGATATT--C-------CTTCAAGAGGGT-CACCA--CA-TT---TC-------AAGG-TCACCACT-CGAA-A-CCAAAtattcaa
gi|18 : ctatTTTTGAAGGGAA-GT-------TCAAAT--ATTT-TT-T-TCCA--T-ACTG
gi|2 : CGAAAT--AAAT-AGTAGTT--TTG--TAGGTATAAT-CTAT-G-CCAAA--A----TTTGCGAATT-GGGAA--GCAT-----TGAATGTTTAGAT-T--CCTG-G-GTTATTTTGAAGGGAAAGC-------TCAAAT--ATTT-TG-T-TCCAT-TTACTGC-CATCA----CTGA-ATTAAAAAA-----T-A--T--T-GTTTCT----TTCC-----CATTT---TAGAAA---TAACAA-GTTA-----G-CAA-GTCC--CT-----TCTTT-T------CATTAATGAAT-ATATT---ATACAT---TATC--TTTA-AT---CCTG--CTTGTG--T----T-TAT---A-AA----TA-C--AGAAA-TGGAAT-TTGG---AT-TTT-------TTTGGTCCTATCATC--TTTTAGTTT-TGTT--A-TTTCAT-TA-ATATCTGCAT-T-TTT-TTAACATTTTAATTTAC-TG-CTCTCTTAAGGCCAT-GTATTCAACAAAATTTGT---TTCACTTT-TGAATTT-GTAAAGTATT--C--AAA-ACTT-AAGAAAGT-TACCAT-CATTTG--TC-A-AA--AAGA-TCA-CATTACAAAGA-CCAAAACC--CTCATTAAATAA-----AGCTTTTC--C----------AAAAAAAAGA--TTCT--TTGTTT-ATCAT-AATAAGATGGGTTATTCCC--ATATTTA----TGATCATAGAAAA--C---TTCTTT-GTCTTGA-AT--GTTA---TTTATAA--TCTT-ATTCAGCTATCT-AGAt
gi|3 : AAATTAAGATCAGT-TTT--TTGATTAGGTATAATTCTATTG-C-AAA--AAAATTTTG-GAATT-G--AAAGCCAG-----TGAG-TTTTAGAT-TTTCGTG-GCGTTATTTTGAAGG-AA-GC-------TCAA-T--ATTT-TGAT-TCC---T-ACTGC-CATCA----CTGA-AT---AAAA-----T-A--T--T-GTTTTCA---TTCat
gi|3 : cccgaatT---ATACAT----ATC--TTTACAT---CCTGTACTTATAGTT----T-TAT---A-AA----TAAC--AGAAA-TGGAAT-TTGG---GGATTT-------TTTGGTCCTATCATC--TT--AGTTT--GTTTAA-TTTCATATA-ATAT-------T-TTT-TTA-TATTTAAA---AA-T---TTTATT---------GTATTCA-CAAACTTTGTCTCTTCACTTT-TGAATTTTATAAAGAATTATC--AAA-ACTT-AAATAAGTGTACCATTCA-TTT--GC-A-AC--AAGG--CA-CAATAC-AAGA-C-AAAACC--CTCATTAAATT-------GCTTTTC--C----------AAAAAAAGGA--TTCTTATTGTTT-ATCATAAATAAG-T-GGTCATT-CC--AT--------------------AA--C---TTCTTT-GTCTTGA-AT--TTTA---TTTAattnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncttacatatacatatctttacatcctgtacttatagttttataaataacagaaatggaatttggggattttttggtcctatcatcttagtttgtttaatttcatataatatttttttatatttaaaaattttattgtattcacaaactttgtctcttcacttttgaattttataaagaattatcaaaacttaaataagtgtaccattcatttgcaacaaggcacaatacaagacaaaaccctcattaaattgcttttccaaaaaaaggattcttattgtttatcataaataagtggtcattccataacttctttgtcttgaattttatttaacaagt
gi|4 : cccgaataaattaagatcagttttttgattaggtataattctattgcaaaaaaattttggaattgaaagccagtgagttttagattttcgtggcgttattttgaaggaagctcaatattttgattcctactgccatcactgaataaaatattgttttcattcattnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncttacaAAAA--AGAT-AATTGTTAGTTG----GGGATTATTCTAT-G-A-AGT--A----TCTG-ATATT-GT-AA--CCA------TGAA-ATTTTGAC-T--CTTT-T-GTTATTTTAAAAGGAA-GC-------TCGAAT--ATTT-TA-T-TCCAT-T--CTAC-C-TCA----TTGACAT---TCAC-----C-A--T-----TCTCC----AT-C-----CATTT---T-GATA---CA-GAA-GTGA-----T-T-G-GTAC--CT-----T-TTT-T------TATCATTAAA--ATATT---GTACA----AATC--TTTGCAA---CCC---TTTTTA--C----T-TGT---A-AAGAATTA-T--AGAAAATTG-AT-TTAG---GG-ATG-------AATGGTTTAATTGTCTTTTT-AATTTCTCTT--A-TAT--T-TACATGTC--CAG-T-TC--------TTTCAATG-AC-AGCCTGTTTTAGACCCGC-AAATTCTACAATATTTGT---TTTATACC-TGAA-TC-ACAAAG-GTT--CTGGAA-GCTT-TTGAA-GT-TGCCAT-CA---GA-AC-A-AA--ACGA-TCA--ATTAC--ATATCTTATACCGGCTC-TGAAATAA-------CTTT--------AT-----AGAAGATAGA----AT--TTGTTT-ATTTT-AAT-ATTTGGATTATA-CC--ATA--CA----TGCTCAAAGGGGC--CTAATTCTTC-G--TTAG-ATGCTTCAGCGTTTATAA--TTTTGATCCAGCacaagt
gi|5 : T--AAAT-AGTAATT--ACA--TGGAAATA-TTCTGT-G-T-AAA-------TTTG-AAACT-T--AT--CCAC-----TGTA-TTTTAGAT-T--CCTG-A--TTGTTTTAAAAGGAA-GT-------TCAAAC--ATAT-TT-T-TCCAT-T-----C-TAACT----CTG-------AAAACCTCCT-C--C--T-GTTT-C----TTCC-----CATTT---T---GA---TA-TGA-GTT--------TAA-TTCTGGTT-----ACTTT-A------TGTT-ATCAAT-AGCTT---ATACA----TATC--TTTACAG---CCT---TTTTTG--T----T-TTTG--A-AA----TA-T--ATTAAATAGTAG-ATGA---AT-TATAGGTAAATGTGGCCTTACAGCC--TT---ATTT-TGTC--C-TGTAAA-AA-AAATGT-C-------T-TTG----TTGAATT-ACTTG-CT---TTAAGCCTGC-ATATTCTATAAATATTAT---TTgaaaa
gi|6 : tatgAAAA--AGAT-AATTGTT--A-G--TGGGAATTATTCTAT-G-A-AGC--A----TCTG-AAATT-GT-AA--CCAT-----TGAA-ATTTTGAA-T--CTTG-T-GGTATTTTAAACGG-A-GC-------TCGAAA--ATTT-TA-T-TCCAT-T--CTAC-T-TCT----CC---AT-----------------------TTTCC-----ACC-----CATTT---T-GATA---CA-GAA-G--A-----GATAG-GTAC--CT-----TTTTA-T------C--TATCAAA--ACATTTCAATCCCT---TTTG--TTT---T---CTTG--TTTT----T----T-TAA---AGAA----TA-T--AGCAATTGt
gi|7 : tT-TGTT--AATTTCAT-TA-ATATCT--GTAT-TTT-TTAGCATTTCTAAT-AG-TG-CTCTCTTAAGGCCACAGTATTCAAAAAAATTTAT---TTCACCTA-TGAATTT-GTAAAGTATT--C--AAA-ACTT-AAGAAG---TACCAT-CA-TTG--TCAA-AA--AAGA-CC--CA-TACGAAGA-CCAAAACC--CTCATTAAA-AT-----AGC-TTTC--CAGAAA-----AAAAAAAAGA--TTCT--TTGTTG-ATCAT-AAT---ACGGATCATT-CC--ATA--TG----TGATCATGGAGAA--C---TTATTctttagggatgggtaacttaattttcctttt
gi|8 : T--AAAT-AGTAATTACTTG----GAAATA-TTCTGT-G-T-AAA--A----TTTG-AAACT-A--AT--CCAC-----TGCA-ATTTAGAT-T--CCTG-A-GTAGTTTTGTAAGGAA-GT-------TC-AAC--ATTT-TC-T-TTC---------C-AATCAAAATTTGA-GC---AATA-----TCA--TTCT-GTTT-C----TTCC-----CATTTGGATATAGA---TA-TAATGTTG-----G-----------CT-----ACTTTAT------GGTTTATCAAT-AGACT---ATACAT---GATC--gt
gi|9 : GAAAT--AAAT-AGTAGTT--T-G--TAGGTATAATTCTAT-G-C-AAA--A----TTTG-GAATT-G--AA--GCCTG----TGAA-GTTTAGAT-C--CTTG-G-GTTATTTTGAAGGGAA-GC-------TCAAAT--ATTT-TG-T-TCCA--T-ACTG--CATTA----CTGA-AT---AAAA-----T-A--T--T-GTTTCC----TTTC-----TA-TT---TAGAAA---TA-CAA-GTTA-------CAA-GTCC--TT-----TCTTT-T------CATTACTAAAT-ATAAT---ATACA----TATC--atagcttaaca
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|10 ): GTATAATAGTAACACATGGAATTTATTGTGTAAGGTTGAATACATGCACACCCACTGTATAATATTAGATTAAATCTGGTCTTGTCCTTTAAAGAGGTTTCAAAAATTATTTTTCAACTCTAAAGTAAAAAACCTCTTCTCTTTCATTTT
Alignments
lowQualScore : 2222 1111111 111111 222222 1111111 22222 111111111111111 111111 11111 1 55555555555555555555555555555555 11 22222 11111111 222 1111111 111 1111 1111 1 3333333333333333 11 11 1111 1 444444444444444444 111111111 1 111 111111 111111 222222 1 11 3333333 5555555555555 111 11 1111 3333333333333 111111 1 1 11 111 11 1 1 1
lowQualScore : 55 3 4 4444 55 1 6 3 999 0000000 3 3 333333 000000 44 0 3 55 777 3 0000000 44 2 55 3 33333 99 7777 3 6666 000000000000000 111111 0 00000 2 777 2 0 777 4 4 55 00000000000000000000000000000000 4 4 00 777 22222 66 33333333 000 6666666 6 888 6 4444 3333 1 6 8 6666666666666666 1 22 11 88 99 0000 0 6 6 444444444444444444 1 666666666 5 1 2 2 1 0 5 333 0 5 0 555555 1 999999 5 5 9999 5 555555 9999999 55 5 6 1 2 2 6 9 11 0 11 1111111 0 0 6666666666666 111 11 8 88 7777 8 4444444444444 0 1 1 555555 0 3 0 33 777 88 7 3 2 5
lowQualScore : .. . . .... .. . . . ... ....... . . ...... ...... .. . . .. ... . ....... .. . .. . ..... .. .... . .... ............... ...... . ..... . ... . . ... . . .. ................................ . . .. ... ..... .. ........ ... ....... . ... . .... .... . . . ................ . .. .. .. .. .... . . . .................. . ......... . . . . . . . ... . . . ...... . ...... . . .... . ...... ....... .. . . . . . . . .. . .. ....... . . ............. ... .. . .. .... . ............. . . . ...... . . . .. ... .. . . . .
lowQualScore : 55 6 6 9999 00 0 5 6 333 5555555 6 6 666666 333333 00 3 6 00 000 1 0000000 22 9 22 1 55555 22 7777 6 9999 888888888888888 555555 4 00000 3 888 8 1 888 4 4 22 33333333333333333333333333333333 4 4 88 000 66666 11 11111111 000 8888888 7 333 7 2222 8888 7 0 0 2222222222222222 0 88 00 66 88 8888 8 7 7 888888888888888888 0 555555555 2 0 5 2 4 8 2 888 6 7 1 333333 7 111111 7 7 7777 7 333333 6666666 99 7 0 7 0 5 7 3 00 8 66 6666666 8 8 4444444444444 888 00 0 88 6666 0 4444444444444 6 0 4 000000 0 2 0 88 555 33 3 3 0 0
consensus : CGAAAT--AGAT-AGTAGTT--TTG--TAGGNATAATTCTAT-G-C-AAA--A----TTTG-GAATT-G--AA--CCAT-----TGAA-GTTTAGAT-T--CCTG-G-GTTATTTTGAAGGGAA-GC-------TCAAAT--ATTT-TG-T-TCCAT-T-ACTGC-CATCA----CTGA-AT---AAAA-----T-A--T--T-GTTTCC----TTCC-----CATTT---TAGAAA---TA-CAA-G-TTA-----G--CA--GGTCCC-------TTCT---TT-TCGTTAATAAAT-ATATT---ATACAT---TATC--TTTAC-AT---CCTG--CTTTTG--T----T-TAT---A-AA----TA-C--AGAAAATGGAAT-TTGG---AG-TTT-------TTTGGTCCTATCGTC--TTT-AGTTT-TGTT--A-TTTCAT-TA-ATATCT-CAT-T-TTT-TTAACATTTCAATT-AC-TG-CTCTCTTAAGGCCGC-GTATTCAACAAAATTTGT---TTCACTTT-TGAATTT-ATAAAGTATT--C--GAA-ACTT-AAGAAGGT-TACCAT-CA-TTG--TC-A-AA--AAGA-TCA-CATTACGAAGA-CCAAAACC--CTCATTAAATAA-----AGCTTTTC--C---AA-----AAAAAAAAGA--TTCT--TTGTTT-ATCAT-AATAAGATGGGTTATT-CC--ATA--CG----TGATCATAGAGAA--C---TTCTTT-GTCTTGA-AT--TTTA---TTTATAA--TCTT-ATCCAGCTATCTGAGA
Reference ( family-1001 ) : CGAAAT--AGAT-AGTAGTT--TTG--TAGGNATAATTCTAT-G-C-AAA--A----TTTG-GAATT-G--AA--CCAT-----TGAA-GTTTAGAT-T--CCTG-G-GTTATTTTGAAGGGAA-GC-------TCAAAT--ATTT-TG-T-TCCAT-T-ACTGC-CATCA----CTGA-AT---AAAA-----T-A--T--T-GTTTCC----TTCC-----CATTT---TAGAAA---TA-CAA-G-TTA-----G--CA--GGTCCC-------TTCT---TT-TCGTTAATAAAT-ATATT---ATACAT---TATC--TTTAC-AT---CCTG--CTTTTG--T----T-TAT---A-AA----TA-C--AGAAAATGGAAT-TTGG---AG-TTT-------TTTGGTCCTATCGTC--TTT-AGTTT-TGTT--A-TTTCAT-TA-ATATCT-CAT-T-TTT-TTAACATTTCAATT-AC-TG-CTCTCTTAAGGCCGC-GTATTCAACAAAATTTGT---TTCACTTT-TGAATTT-ATAAAGTATT--C--GAA-ACTT-AAGAAGGT-TACCAT-CA-TTG--TC-A-AA--AAGA-TCA-CATTACGAAGA-CCAAAACC--CTCATTAAATAA-----AGCTTTTC--C---AA-----AAAAAAAAGA--TTCT--TTGTTT-ATCAT-AATAAGATGGGTTATT-CC--ATA--CG----TGATCATAGAGAA--C---TTCTTT-GTCTTGA-AT--TTTA---TTTATAA--TCTT-ATCCAGCTATCTGAGA
gi|1 : T-AGTAGTC----G--TA--TACAAGTCTAT-CTC-AAA--A----TT---GAATTTG--AAG-CCATAGTTGTAAC-GCTTCTATAT--CCTGTG-GTT----TGGAGAGAA-GCGAGAGCCTCACATTAATTTGTG-TGTCCATAG-GCTGCGCATCA----CTGG-AT---AAAA-----T-AATT--TAGTTTCTATTGTTCGATATGTACTT---TAGAAAATTCA-CAT-G-CTTTTCGTG--CAATGTTCCCACCTATCTTTTACATT-TCGCTAATAAATTACATT---GTATATACATATCGGTTTAC-ACGTGCCTT--CTTTTG--TGTGGTGTATCTAA-AA----TA-CTCAGAAAATGGAATATTGGGAAAG-TCT-------TTTGGTCCTCTTCTC--TTT-GGTT---GTT--A-ATT-AT-TC-ATATC---AT-TATTTATTAACATTTCCAAT-ACGTG-CTCTCT-AAGGCCACTGTATTCAACAAA--TTGT---TTTCCTTT-TG----T-A-AAAGTATT--C----A-ATCT-AAGCAGTT-TACCAT-CA-GTGAGTC-ATAATCAAGAATCA-CATAGCAAAGA-C-AAACCC--CTCATTAA-TAATTATTAGCTTTTCTCC---AATAAGTAAACAAAAGAATTTCT--TTGTTTTATTA--GATATGAAGGGTTATT-TCTCA-A--CGCTATTGATCATAGAAAATAC---TTCTTTTGTCTTGACAT--TTTA---TTTATAACGTC-T-AT-CAGCTATCTGAGA
gi|11 : aaggtcatgggctgtttCGAAAT--AAAT-AGCAGTT--T-G--TAGGGACAATTCTAT-G-C-AAA--A----TTTG-GAATT-G--AA--GCGCG----TGAA-GTTTAGAT-T--CCTG-G-TTTATTATAAATGGAA-GC-------CCAAAT--ATTT-TG-T-TCCA--T-ACTG--CATCA----CTTA-AT---AAAA-----T-A--T--T-GTTTTA----TTTC-----AATgatattcctttctcctataaaacatctgttatataagtgctcctgg
gi|12 : TATTCTACAATGTTTGTT--TTCATACC-TGAA-TC-ACAAAGTGCC--T--GAACGCTT-TTGAA-GT-TGCCAT-CA-GAA--TC-A-AA--CAGA-TCA-
gi|13 : tttctatgatagcctgccttagaccaaaaGAAAT--AGAT-TGTAGTT--T-G--TAGGTATACTTCTAT-G-C-AAA--T----TTTG-AAATT-G--AAG-CCAG-----TGAA-ATTTAGAT-T--CTTG-G-GTTATTTTGAAGGGAA-GT-------TCAAAT--ATTT-TT-T-TCCA--T-ACTGT-Cactcata
gi|14 : TTTTGAAGGGAA-GT-------TCAAAT--ATTT-TG-T-TCCAT-T--CTG--CATCA----ATGA-AT---GAAA-----T-A--T--A-GTTTTC----TTTC-----CATTT---T-GAAA---TA-CAA-G-GTA-----T--CG--GCTCC---------------TT-TAATTAATAATTAATATT---GTc
gi|15 : TTT-TT-T-TTCGT---ATGGG-CATCG----CTAA-AT---GAAA-----T-A--T--T-GTTTTC----TTTC-----CA-TC---TAGAAA---TA-CAA-G-TAA-----A--CA--TGTCCC---------------T-TCATTAATAAAT-ATATT---ATACA----TATC--TTTAC-CT---CCT
gi|16 : tAAAA--AGAT-AAT-GTT--TAG--TGGGGATA---TTAT-G---AAGTTA----TCTG-ATATT-G--TA--CCAT-----TGAA-GTTTTGAC-T--CTTT-T-GTTATTTTAAAAGGAA-GC-------TCGAAT--ATTT-T
gi|17 : tt-GTATGTAACGTAATTTG----TTCACTTTCTGGAT----TAAGATATT--C-------CTTCAAGAGGGT-CACCA--CA-TT---TC-------AAGG-TCACCACT-CGAA-A-CCAAAtattcaa
gi|18 : ctatTTTTGAAGGGAA-GT-------TCAAAT--ATTT-TT-T-TCCA--T-ACTG
gi|2 : CGAAAT--AAAT-AGTAGTT--TTG--TAGGTATAAT-CTAT-G-CCAAA--A----TTTGCGAATT-GGGAA--GCAT-----TGAATGTTTAGAT-T--CCTG-G-GTTATTTTGAAGGGAAAGC-------TCAAAT--ATTT-TG-T-TCCAT-TTACTGC-CATCA----CTGA-ATTAAAAAA-----T-A--T--T-GTTTCT----TTCC-----CATTT---TAGAAA---TAACAA-G-TTA-----G--CA--AGTCCC-------TTCT---TT-TCATTAATGAAT-ATATT---ATACAT---TATC--TTTA--AT---CCTG--CTTGTG--T----T-TAT---A-AA----TA-C--AGAAA-TGGAAT-TTGG---AT-TTT-------TTTGGTCCTATCATC--TTTTAGTTT-TGTT--A-TTTCAT-TA-ATATCTGCAT-T-TTT-TTAACATTTTAATTTAC-TG-CTCTCTTAAGGCCAT-GTATTCAACAAAATTTGT---TTCACTTT-TGAATTT-GTAAAGTATT--C--AAA-ACTT-AAGAAAGT-TACCAT-CATTTG--TC-A-AA--AAGA-TCA-CATTACAAAGA-CCAAAACC--CTCATTAAATAA-----AGCTTTTC--C----------AAAAAAAAGA--TTCT--TTGTTT-ATCAT-AATAAGATGGGTTATTCCC--ATATTTA----TGATCATAGAAAA--C---TTCTTT-GTCTTGA-AT--GTTA---TTTATAA--TCTT-ATTCAGCTATCT-AGAt
gi|3 : AAATTAAGATCAGT-TTT--TTGATTAGGTATAATTCTATTG-C-AAA--AAAATTTTG-GAATT-G--AAAGCCAG-----TGAG-TTTTAGAT-TTTCGTG-GCGTTATTTTGAAGG-AA-GC-------TCAA-T--ATTT-TGAT-TCC---T-ACTGC-CATCA----CTGA-AT---AAAA-----T-A--T--T-GTTTTCA---TTCat
gi|3 : cccgaatT---ATACAT----ATC--TTTAC-AT---CCTGTACTTATAGTT----T-TAT---A-AA----TAAC--AGAAA-TGGAAT-TTGG---GGATTT-------TTTGGTCCTATCATC--TT--AGTTT--GTTTAA-TTTCATATA-ATAT-------T-TTT-TTA-TATTTAAA---AA-T---TTTATT---------GTATTCA-CAAACTTTGTCTCTTCACTTT-TGAATTTTATAAAGAATTATC--AAA-ACTT-AAATAAGTGTACCATTCA-TTT--GC-A-AC--AAGG--CA-CAATAC-AAGA-C-AAAACC--CTCATTAAATT-------GCTTTTC--C----------AAAAAAAGGA--TTCTTATTGTTT-ATCATAAATAAG-T-GGTCATT-CC--AT--------------------AA--C---TTCTTT-GTCTTGA-AT--TTTA---TTTAattnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncttacatatacatatctttacatcctgtacttatagttttataaataacagaaatggaatttggggattttttggtcctatcatcttagtttgtttaatttcatataatatttttttatatttaaaaattttattgtattcacaaactttgtctcttcacttttgaattttataaagaattatcaaaacttaaataagtgtaccattcatttgcaacaaggcacaatacaagacaaaaccctcattaaattgcttttccaaaaaaaggattcttattgtttatcataaataagtggtcattccataacttctttgtcttgaattttatttaacaagt
gi|4 : cccgaataaattaagatcagttttttgattaggtataattctattgcaaaaaaattttggaattgaaagccagtgagttttagattttcgtggcgttattttgaaggaagctcaatattttgattcctactgccatcactgaataaaatattgttttcattcattnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncttacaAAAA--AGAT-AATTGTTAGTTG----GGGATTATTCTAT-G-A-AGT--A----TCTG-ATATT-GT-AA--CCA------TGAA-ATTTTGAC-T--CTTT-T-GTTATTTTAAAAGGAA-GC-------TCGAAT--ATTT-TA-T-TCCAT-T--CTAC-C-TCA----TTGACAT---TCAC-----C-A--T-----TCTCC----AT-C-----CATTT---T-GATA---CA-GAA-G-TGA-----T--T---GGTACC-------TT-T---TT-TTATCATTAAA--ATATT---GTACA----AATC--TTTGCAAC---CCT----TTTTA--C----T-TGT---A-AAGAATTA-T--AGAAAATTG-AT-TTAG---GG-ATG-------AATGGTTTAATTGTCTTTTT-AATTTCTCTT--A-TAT--T-TACATGTC--CAG-T-TC--------TTTCAATG-AC-AGCCTGTTTTAGACCCGC-AAATTCTACAATATTTGT---TTTATACC-TGAA-TC-ACAAAG-GTT--CTGGAA-GCTT-TTGAA-GT-TGCCAT-CA---GA-AC-A-AA--ACGA-TCA--ATTAC--ATATCTTATACCGGCTC-TGAAATAA-------CTTT--------AT-----AGAAGATAGA----AT--TTGTTT-ATTTT-AAT-ATTTGGATTATA-CC--ATA--CA----TGCTCAAAGGGGC--CTAATTCTTC-G--TTAG-ATGCTTCAGCGTTTATAA--TTTTGATCCAGCacaagt
gi|5 : T--AAAT-AGTAATT--ACA--TGGAAATA-TTCTGT-G-T-AAA-------TTTG-AAACT-T--AT--CCAC-----TGTA-TTTTAGAT-T--CCTG-A--TTGTTTTAAAAGGAA-GT-------TCAAAC--ATAT-TT-T-TCCAT-T-----C-TAACT----CTG-------AAAACCTCCT-C--C--T-GTTT-C----TTCC-----CATTT---T---GA---TA-TGA-GTTTA-----ATTCT--GGT----------TACT---TT-ATGTT-ATCAAT-AGCTT---ATACA----TATC--TTTAC-AG---CCT---TTTTTG--T----T-TTTG--A-AA----TA-T--ATTAAATAGTAG-ATGA---AT-TATAGGTAAATGTGGCCTTACAGCC--TT---ATTT-TGTC--C-TGTAAA-AA-AAATGT-C-------T-TTG----TTGAATT-ACTTG-CT---TTAAGCCTGC-ATATTCTATAAATATTAT---TTgaaaa
gi|6 : tatgAAAA--AGAT-AATTGTT--A-G--TGGGAATTATTCTAT-G-A-AGC--A----TCTG-AAATT-GT-AA--CCAT-----TGAA-ATTTTGAA-T--CTTG-T-GGTATTTTAAACGG-A-GC-------TCGAAA--ATTT-TA-T-TCCAT-T--CTAC-T-TCT----CC---AT-----------------------TTTCC-----ACC-----CATTT---T-GATA---CA-GAA-G---A-----GA-TA--GGTACC-------TTTT---TA-TC--TATCAAA--ACATTTCAATCCCT---TTTG--TTT----T---CTTG--TTTT----T----T-TAA---AGAA----TA-T--AGCAATTGt
gi|7 : tT-TGTT--AATTTCAT-TA-ATATCT--GTAT-TTT-TTAGCATTTCTAAT-AG-TG-CTCTCTTAAGGCCACAGTATTCAAAAAAATTTAT---TTCACCTA-TGAATTT-GTAAAGTATT--C--AAA-ACTT-AAGAAG---TACCAT-CA-TTG--TCAA-AA--AAGA-CC--CA-TACGAAGA-CCAAAACC--CTCATTAAA-AT-----AGC-TTTC--CAGAAA-----AAAAAAAAGA--TTCT--TTGTTG-ATCAT-AAT---ACGGATCATT-CC--ATA--TG----TGATCATGGAGAA--C---TTATTctttagggatgggtaacttaattttcctttt
gi|8 : T--AAAT-AGTAATTACTTG----GAAATA-TTCTGT-G-T-AAA--A----TTTG-AAACT-A--AT--CCAC-----TGCA-ATTTAGAT-T--CCTG-A-GTAGTTTTGTAAGGAA-GT-------TC-AAC--ATTT-TC-T-TTC---------C-AATCAAAATTTGA-GC---AATA-----TCA--TTCT-GTTT-C----TTCC-----CATTTGGATATAGA---TA-TAATG-TTG-----G-----------C-------TACT---TTATGGTTTATCAAT-AGACT---ATACAT---GATC--gt
gi|9 : GAAAT--AAAT-AGTAGTT--T-G--TAGGTATAATTCTAT-G-C-AAA--A----TTTG-GAATT-G--AA--GCCTG----TGAA-GTTTAGAT-C--CTTG-G-GTTATTTTGAAGGGAA-GC-------TCAAAT--ATTT-TG-T-TCCA--T-ACTG--CATTA----CTGA-AT---AAAA-----T-A--T--T-GTTTCC----TTTC-----TA-TT---TAGAAA---TA-CAA-G-TTA--------CA--AGTCCT-------TTCT---TT-TCATTACTAAAT-ATAAT---ATACA----TATC--atagcttaaca
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|10 ): GTATAATAGTAACACATGGAATTTATTGTGTAAGGTTGAATACATGCACACCCACTGTATAATATTAGATTAAATCTGGTCTTGTCCTTTAAAGAGGTTTCAAAAATTATTTTTCAACTCTAAAGTAAAAAACCTCTTCTCTTTCATTTT
Alignments
lowQualScore : 2222 1111111 111111 222222 1111111 22222 111111111111111 111111 11111 1 55555555555555555555555555555555 11 22222 11111111 222 1111111 111 1111 1111 1 3333333333333333 11 11 1111 1 444444444444444444 111111111 1 111 111111 111111 222222 1 11 3333333 5555555555555 111 11 1111 3333333333333 111111 1 1 11 111 11 1 1 1
lowQualScore : 55 3 4 4444 55 1 6 3 999 0000000 3 3 333333 000000 44 0 3 55 777 3 0000000 44 2 55 3 33333 99 7777 3 6666 000000000000000 111111 0 00000 2 777 2 0 777 4 4 55 00000000000000000000000000000000 4 4 00 777 22222 66 33333333 000 6666666 6 888 6 4444 3333 1 6 8 6666666666666666 1 22 11 88 99 0000 0 6 6 444444444444444444 1 666666666 5 1 2 2 1 0 5 333 0 5 0 555555 1 999999 5 5 9999 5 555555 9999999 55 5 6 1 2 2 6 9 11 0 11 1111111 0 0 6666666666666 111 11 8 88 7777 8 4444444444444 0 1 1 555555 0 3 0 33 777 88 7 3 2 5
lowQualScore : .. . . .... .. . . . ... ....... . . ...... ...... .. . . .. ... . ....... .. . .. . ..... .. .... . .... ............... ...... . ..... . ... . . ... . . .. ................................ . . .. ... ..... .. ........ ... ....... . ... . .... .... . . . ................ . .. .. .. .. .... . . . .................. . ......... . . . . . . . ... . . . ...... . ...... . . .... . ...... ....... .. . . . . . . . .. . .. ....... . . ............. ... .. . .. .... . ............. . . . ...... . . . .. ... .. . . . .
lowQualScore : 55 6 6 9999 00 0 5 6 333 5555555 6 6 666666 333333 00 3 6 00 000 1 0000000 22 9 22 1 55555 22 7777 6 9999 888888888888888 555555 4 00000 3 888 8 1 888 4 4 22 33333333333333333333333333333333 4 4 88 000 66666 11 11111111 000 8888888 7 333 7 2222 8888 7 0 0 2222222222222222 0 88 00 66 88 8888 8 7 7 888888888888888888 0 555555555 2 0 5 2 4 8 2 888 6 7 1 333333 7 111111 7 7 7777 7 333333 6666666 99 7 0 7 0 5 7 3 00 8 66 6666666 8 8 4444444444444 888 00 0 88 6666 0 4444444444444 6 0 4 000000 0 2 0 88 555 33 3 3 0 0
consensus : CGAAAT--AGAT-AGTAGTT--TTG--TAGGNATAATTCTAT-G-C-AAA--A----TTTG-GAATT-G--AA--CCAT-----TGAA-GTTTAGAT-T--CCTG-G-GTTATTTTGAAGGGAA-GC-------TCAAAT--ATTT-TG-T-TCCAT-T-ACTGC-CATCA----CTGA-AT---AAAA-----T-A--T--T-GTTTCC----TTCC-----CATTT---TAGAAA---TA-CAA-G-TTA-----G--CA--GGTCCC-------TTCT---TT-TCGTTAATAAAT-ATATT---ATACAT---TATC--TTTAC-AT---CCTG--CTTTTG--T----T-TAT---A-AA----TA-C--AGAAAATGGAAT-TTGG---AG-TTT-------TTTGGTCCTATCGTC--TTT-AGTTT-TGTT--A-TTTCAT-TA-ATATCT-CAT-T-TTT-TTAACATTTCAATT-AC-TG-CTCTCTTAAGGCCGC-GTATTCAACAAAATTTGT---TTCACTTT-TGAATTT-ATAAAGTATT--C--GAA-ACTT-AAGAAGGT-TACCAT-CA-TTG--TC-A-AA--AAGA-TCA-CATTACGAAGA-CCAAAACC--CTCATTAAATAA-----AGCTTTTC--C---AA-----AAAAAAAAGA--TTCT--TTGTTT-ATCAT-AATAAGATGGGTTATT-CC--ATA--CG----TGATCATAGAGAA--C---TTCTTT-GTCTTGA-AT--TTTA---TTTATAA--TCTT-ATCCAGCTATCTGAGA
Reference ( family-1001 ) : CGAAAT--AGAT-AGTAGTT--TTG--TAGGNATAATTCTAT-G-C-AAA--A----TTTG-GAATT-G--AA--CCAT-----TGAA-GTTTAGAT-T--CCTG-G-GTTATTTTGAAGGGAA-GC-------TCAAAT--ATTT-TG-T-TCCAT-T-ACTGC-CATCA----CTGA-AT---AAAA-----T-A--T--T-GTTTCC----TTCC-----CATTT---TAGAAA---TA-CAA-G-TTA-----G--CA--GGTCCC-------TTCT---TT-TCGTTAATAAAT-ATATT---ATACAT---TATC--TTTAC-AT---CCTG--CTTTTG--T----T-TAT---A-AA----TA-C--AGAAAATGGAAT-TTGG---AG-TTT-------TTTGGTCCTATCGTC--TTT-AGTTT-TGTT--A-TTTCAT-TA-ATATCT-CAT-T-TTT-TTAACATTTCAATT-AC-TG-CTCTCTTAAGGCCGC-GTATTCAACAAAATTTGT---TTCACTTT-TGAATTT-ATAAAGTATT--C--GAA-ACTT-AAGAAGGT-TACCAT-CA-TTG--TC-A-AA--AAGA-TCA-CATTACGAAGA-CCAAAACC--CTCATTAAATAA-----AGCTTTTC--C---AA-----AAAAAAAAGA--TTCT--TTGTTT-ATCAT-AATAAGATGGGTTATT-CC--ATA--CG----TGATCATAGAGAA--C---TTCTTT-GTCTTGA-AT--TTTA---TTTATAA--TCTT-ATCCAGCTATCTGAGA
gi|1 : T-AGTAGTC----G--TA--TACAAGTCTAT-CTC-AAA--A----TT---GAATTTG--AAG-CCATAGTTGTAAC-GCTTCTATAT--CCTGTG-GTT----TGGAGAGAA-GCGAGAGCCTCACATTAATTTGTG-TGTCCATAG-GCTGCGCATCA----CTGG-AT---AAAA-----T-AATT--TAGTTTCTATTGTTCGATATGTACTT---TAGAAAATTCA-CAT-G-CTTTTCGTG--CAATGTTCCCACCTATCTTTTACATT-TCGCTAATAAATTACATT---GTATATACATATCGGTTTAC-ACGTGCCTT--CTTTTG--TGTGGTGTATCTAA-AA----TA-CTCAGAAAATGGAATATTGGGAAAG-TCT-------TTTGGTCCTCTTCTC--TTT-GGTT---GTT--A-ATT-AT-TC-ATATC---AT-TATTTATTAACATTTCCAAT-ACGTG-CTCTCT-AAGGCCACTGTATTCAACAAA--TTGT---TTTCCTTT-TG----T-A-AAAGTATT--C----A-ATCT-AAGCAGTT-TACCAT-CA-GTGAGTC-ATAATCAAGAATCA-CATAGCAAAGA-C-AAACCC--CTCATTAA-TAATTATTAGCTTTTCTCC---AATAAGTAAACAAAAGAATTTCT--TTGTTTTATTA--GATATGAAGGGTTATT-TCTCA-A--CGCTATTGATCATAGAAAATAC---TTCTTTTGTCTTGACAT--TTTA---TTTATAACGTC-T-AT-CAGCTATCTGAGA
gi|11 : aaggtcatgggctgtttCGAAAT--AAAT-AGCAGTT--T-G--TAGGGACAATTCTAT-G-C-AAA--A----TTTG-GAATT-G--AA--GCGCG----TGAA-GTTTAGAT-T--CCTG-G-TTTATTATAAATGGAA-GC-------CCAAAT--ATTT-TG-T-TCCA--T-ACTG--CATCA----CTTA-AT---AAAA-----T-A--T--T-GTTTTA----TTTC-----AATgatattcctttctcctataaaacatctgttatataagtgctcctgg
gi|12 : TATTCTACAATGTTTGTT--TTCATACC-TGAA-TC-ACAAAGTGCC--T--GAACGCTT-TTGAA-GT-TGCCAT-CA-GAA--TC-A-AA--CAGA-TCA-
gi|13 : tttctatgatagcctgccttagaccaaaaGAAAT--AGAT-TGTAGTT--T-G--TAGGTATACTTCTAT-G-C-AAA--T----TTTG-AAATT-G--AAG-CCAG-----TGAA-ATTTAGAT-T--CTTG-G-GTTATTTTGAAGGGAA-GT-------TCAAAT--ATTT-TT-T-TCCA--T-ACTGT-Cactcata
gi|14 : TTTTGAAGGGAA-GT-------TCAAAT--ATTT-TG-T-TCCAT-T--CTG--CATCA----ATGA-AT---GAAA-----T-A--T--A-GTTTTC----TTTC-----CATTT---T-GAAA---TA-CAA-G-GTA-----T--CG--GCTCC---------------TT-TAATTAATAATTAATATT---GTc
gi|15 : TTT-TT-T-TTCGT---ATGGG-CATCG----CTAA-AT---GAAA-----T-A--T--T-GTTTTC----TTTC-----CA-TC---TAGAAA---TA-CAA-G-TAA-----A--CA--TGTCCC---------------T-TCATTAATAAAT-ATATT---ATACA----TATC--TTTAC-CT---CCT
gi|16 : tAAAA--AGAT-AAT-GTT--TAG--TGGGGATA---TTAT-G---AAGTTA----TCTG-ATATT-G--TA--CCAT-----TGAA-GTTTTGAC-T--CTTT-T-GTTATTTTAAAAGGAA-GC-------TCGAAT--ATTT-T
gi|17 : tt-GTATGTAACGTAATTTG----TTCACTTTCTGGAT----TAAGATATT--C-------CTTCAAGAGGGT-CACCA--CA-TT---TC-------AAGG-TCACCACT-CGAA-A-CCAAAtattcaa
gi|18 : ctatTTTTGAAGGGAA-GT-------TCAAAT--ATTT-TT-T-TCCA--T-ACTG
gi|2 : CGAAAT--AAAT-AGTAGTT--TTG--TAGGTATAAT-CTAT-G-CCAAA--A----TTTGCGAATT-GGGAA--GCAT-----TGAATGTTTAGAT-T--CCTG-G-GTTATTTTGAAGGGAAAGC-------TCAAAT--ATTT-TG-T-TCCAT-TTACTGC-CATCA----CTGA-ATTAAAAAA-----T-A--T--T-GTTTCT----TTCC-----CATTT---TAGAAA---TAACAA-G-TTA-----G--CA--AGTCCC-------TTCT---TT-TCATTAATGAAT-ATATT---ATACAT---TATC--TTTA--AT---CCTG--CTTGTG--T----T-TAT---A-AA----TA-C--AGAAA-TGGAAT-TTGG---AT-TTT-------TTTGGTCCTATCATC--TTTTAGTTT-TGTT--A-TTTCAT-TA-ATATCTGCAT-T-TTT-TTAACATTTTAATTTAC-TG-CTCTCTTAAGGCCAT-GTATTCAACAAAATTTGT---TTCACTTT-TGAATTT-GTAAAGTATT--C--AAA-ACTT-AAGAAAGT-TACCAT-CATTTG--TC-A-AA--AAGA-TCA-CATTACAAAGA-CCAAAACC--CTCATTAAATAA-----AGCTTTTC--C----------AAAAAAAAGA--TTCT--TTGTTT-ATCAT-AATAAGATGGGTTATTCCC--ATATTTA----TGATCATAGAAAA--C---TTCTTT-GTCTTGA-AT--GTTA---TTTATAA--TCTT-ATTCAGCTATCT-AGAt
gi|3 : AAATTAAGATCAGT-TTT--TTGATTAGGTATAATTCTATTG-C-AAA--AAAATTTTG-GAATT-G--AAAGCCAG-----TGAG-TTTTAGAT-TTTCGTG-GCGTTATTTTGAAGG-AA-GC-------TCAA-T--ATTT-TGAT-TCC---T-ACTGC-CATCA----CTGA-AT---AAAA-----T-A--T--T-GTTTTCA---TTCat
gi|3 : cccgaatT---ATACAT----ATC--TTTAC-AT---CCTGTACTTATAGTT----T-TAT---A-AA----TAAC--AGAAA-TGGAAT-TTGG---GGATTT-------TTTGGTCCTATCATC--TT--AGTTT--GTTTAA-TTTCATATA-ATAT-------T-TTT-TTA-TATTTAAA---AA-T---TTTATT---------GTATTCA-CAAACTTTGTCTCTTCACTTT-TGAATTTTATAAAGAATTATC--AAA-ACTT-AAATAAGTGTACCATTCA-TTT--GC-A-AC--AAGG--CA-CAATAC-AAGA-C-AAAACC--CTCATTAAATT-------GCTTTTC--C----------AAAAAAAGGA--TTCTTATTGTTT-ATCATAAATAAG-T-GGTCATT-CC--AT--------------------AA--C---TTCTTT-GTCTTGA-AT--TTTA---TTTAattnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncttacatatacatatctttacatcctgtacttatagttttataaataacagaaatggaatttggggattttttggtcctatcatcttagtttgtttaatttcatataatatttttttatatttaaaaattttattgtattcacaaactttgtctcttcacttttgaattttataaagaattatcaaaacttaaataagtgtaccattcatttgcaacaaggcacaatacaagacaaaaccctcattaaattgcttttccaaaaaaaggattcttattgtttatcataaataagtggtcattccataacttctttgtcttgaattttatttaacaagt
gi|4 : cccgaataaattaagatcagttttttgattaggtataattctattgcaaaaaaattttggaattgaaagccagtgagttttagattttcgtggcgttattttgaaggaagctcaatattttgattcctactgccatcactgaataaaatattgttttcattcattnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncttacaAAAA--AGAT-AATTGTTAGTTG----GGGATTATTCTAT-G-A-AGT--A----TCTG-ATATT-GT-AA--CCA------TGAA-ATTTTGAC-T--CTTT-T-GTTATTTTAAAAGGAA-GC-------TCGAAT--ATTT-TA-T-TCCAT-T--CTAC-C-TCA----TTGACAT---TCAC-----C-A--T-----TCTCC----AT-C-----CATTT---T-GATA---CA-GAA-G-TGA-----T--T---GGTACC-------TT-T---TT-TTATCATTAAA--ATATT---GTACA----AATC--TTTGCAAC---CCT----TTTTA--C----T-TGT---A-AAGAATTA-T--AGAAAATTG-AT-TTAG---GG-ATG-------AATGGTTTAATTGTCTTTTT-AATTTCTCTT--A-TAT--T-TACATGTC--CAG-T-TC--------TTTCAATG-AC-AGCCTGTTTTAGACCCGC-AAATTCTACAATATTTGT---TTTATACC-TGAA-TC-ACAAAG-GTT--CTGGAA-GCTT-TTGAA-GT-TGCCAT-CA---GA-AC-A-AA--ACGA-TCA--ATTAC--ATATCTTATACCGGCTC-TGAAATAA-------CTTT--------AT-----AGAAGATAGA----AT--TTGTTT-ATTTT-AAT-ATTTGGATTATA-CC--ATA--CA----TGCTCAAAGGGGC--CTAATTCTTC-G--TTAG-ATGCTTCAGCGTTTATAA--TTTTGATCCAGCacaagt
gi|5 : T--AAAT-AGTAATT--ACA--TGGAAATA-TTCTGT-G-T-AAA-------TTTG-AAACT-T--AT--CCAC-----TGTA-TTTTAGAT-T--CCTG-A--TTGTTTTAAAAGGAA-GT-------TCAAAC--ATAT-TT-T-TCCAT-T-----C-TAACT----CTG-------AAAACCTCCT-C--C--T-GTTT-C----TTCC-----CATTT---T---GA---TA-TGA-GTTTA-----ATTCT--GGT----------TACT---TT-ATGTT-ATCAAT-AGCTT---ATACA----TATC--TTTAC-AG---CCT---TTTTTG--T----T-TTTG--A-AA----TA-T--ATTAAATAGTAG-ATGA---AT-TATAGGTAAATGTGGCCTTACAGCC--TT---ATTT-TGTC--C-TGTAAA-AA-AAATGT-C-------T-TTG----TTGAATT-ACTTG-CT---TTAAGCCTGC-ATATTCTATAAATATTAT---TTgaaaa
gi|6 : tatgAAAA--AGAT-AATTGTT--A-G--TGGGAATTATTCTAT-G-A-AGC--A----TCTG-AAATT-GT-AA--CCAT-----TGAA-ATTTTGAA-T--CTTG-T-GGTATTTTAAACGG-A-GC-------TCGAAA--ATTT-TA-T-TCCAT-T--CTAC-T-TCT----CC---AT-----------------------TTTCC-----ACC-----CATTT---T-GATA---CA-GAA-G---A-----GA-TA--GGTACC-------TTTT---TA-TC--TATCAAA--ACATTTCAATCCCT---TTTG--TTT----T---CTTG--TTTT----T----T-TAA---AGAA----TA-T--AGCAATTGt
gi|7 : tT-TGTT--AATTTCAT-TA-ATATCT--GTAT-TTT-TTAGCATTTCTAAT-AG-TG-CTCTCTTAAGGCCACAGTATTCAAAAAAATTTAT---TTCACCTA-TGAATTT-GTAAAGTATT--C--AAA-ACTT-AAGAAG---TACCAT-CA-TTG--TCAA-AA--AAGA-CC--CA-TACGAAGA-CCAAAACC--CTCATTAAA-AT-----AGC-TTTC--CAGAAA-----AAAAAAAAGA--TTCT--TTGTTG-ATCAT-AAT---ACGGATCATT-CC--ATA--TG----TGATCATGGAGAA--C---TTATTctttagggatgggtaacttaattttcctttt
gi|8 : T--AAAT-AGTAATTACTTG----GAAATA-TTCTGT-G-T-AAA--A----TTTG-AAACT-A--AT--CCAC-----TGCA-ATTTAGAT-T--CCTG-A-GTAGTTTTGTAAGGAA-GT-------TC-AAC--ATTT-TC-T-TTC---------C-AATCAAAATTTGA-GC---AATA-----TCA--TTCT-GTTT-C----TTCC-----CATTTGGATATAGA---TA-TAATG-TTG-----G-----------C-------TACT---TTATGGTTTATCAAT-AGACT---ATACAT---GATC--gt
gi|9 : GAAAT--AAAT-AGTAGTT--T-G--TAGGTATAATTCTAT-G-C-AAA--A----TTTG-GAATT-G--AA--GCCTG----TGAA-GTTTAGAT-C--CTTG-G-GTTATTTTGAAGGGAA-GC-------TCAAAT--ATTT-TG-T-TCCA--T-ACTG--CATTA----CTGA-AT---AAAA-----T-A--T--T-GTTTCC----TTTC-----TA-TT---TAGAAA---TA-CAA-G-TTA--------CA--AGTCCT-------TTCT---TT-TCATTACTAAAT-ATAAT---ATACA----TATC--atagcttaaca
blockSeqs : TA C A AGTT AT G A T CC AAAAT C . GGAA CG TG . TT GC A . . . GA . TTTA T AAAT C TAAA CCTCCTCCT TCA . T GGA A . A T TT GATAGGTACCTTTT A A TA TCA TT . GCAAC GTA GTT . G G GAAT AC A A . ATTATAGGTAAA T CA TT TT CT TAA C A C CTGCATTTTTTTAAC T TTTACTG C C G A A G CTC C TTTTAT T ATCA C C AGTG T TTTG AAAA T C C A G G T C GG AT AA CAGAAA T TA . TA AAGA C ATATTTA T A CTAA . T . GC GCG . T G T .
blockSeqs : . . A ACTT . T C . C TTA . . AAAG TG G . . G . . . . G . TA G . . A TCATTCT TA . T . A . . . G GCAAGTCCCTTCT . A T . TT . ACCT G T . . . . C A A . GGATTT T CA . T T AA C . . CTGTATTTTTTAGC A TGACAGC T A C G . A T . TTTGT T CTGG . . GGT . GAA AAA T . T A A G . C . AT TA AT T . . T AAG . ATACA A G C . T . . . . T . C
blockSeqs : . . A TA . G A . C A . . AAG G A . . G . . . . T . TA C . . G TATT TC . T . A . . . T ATTCTGGTTACT . A T . TG . ACAT G C . . . . T T T . ATTTT A TG . . T A A . . TTTTTTAT C TTACTTG G T C G . A . . TTTGT T TG . . AGT . TTT AAA T . A A G T . T . AT A C T . . T ATT . ATATG T G C . . . . .
blockSeqs : . . T TT . T A . C T . . TAA T G . . T . . . . G . TT C . . G TATA TC . T . A . . . T CAAGTCCTTTCT . A T . T . ACAG . T . . . . T . . . GGATG G AG . . T A C . . CCAGTTC G ATAGTG C C G A . C . . TCAC A CA . . GT . TTG AAC T . T A . G . C . A . C . . . T A . AT . . C
blockSeqs : . . A TT . T A . A A . . TAA T T . . G . . . . T . TA C . . A TATT CT . T . . . . . T TTGGTACCTTT . G T . T . AAT . T . . . . T . . C . . . GTCTTTG C AAT . . . . . A . . TCAC T CA . . GT . TT AAA C . . . . . . .
blockSeqs : . . T AC . G A . T A . . AA G A . . T . . . . T . TA C . . T TATT CC . T . . . . . T ACATGTCCC . G T . A . T . T . . TT . C . . G . GA . . .
blockSeqs : . . A T . A A . A A . . TA C T . . A . . . . G . TA C . . A TATT CC . T . . . . . T TCGGCTCC . A . . T . A .
blockSeqs : . . A T . A . . T A . . AT T A . . T . . . . A . TT C . . A TATT CC . . . . . . . . GCTACT . . . . T .
blockSeqs : . . . A . A . . C A . . AT C A . . A . . . . T . TT . . . A CAT C . . .
blockSeqs : . . T . T . . . . . . AA . G . . G . . . . A . TT . . . . . C
blockSeqs : . . . . C . TA .
blockSeqs : . . . . G . .
blockSeqs : .
blockSeqCons : TT** C** AA**** N***** G** ******* ** TA*** C* TATT*********** CC**** ***** *** GCGGGTCCCTTCT******************* T* T**** ** ACAT**** G** T****** *** T*** ATTT************ T* T* CCGCATTTTTTAGC**** TCTAT* CG**** GGT* TTG*** AAA**** T* AT A****** C************ T** T* A*** ATACA******** C*****
originalCons : CGAAAT--AGAT-AGTAGTT--TTG--TAGGNATAATTCTAT-G-C-AAA--A----TTTG-GAATT-G--AA--CCAT-----TGAA-GTTTAGAT-T--CCTG-G-GTTATTTTGAAGGGAA-GC-------TCAAAT--ATTT-TG-T-TCCAT-T-ACTGC-CATCA----CTGA-AT---AAAA-----T-A--T--T-GTTTCC----TTCC-----CATTT---TAGAAA---TA-CAA-G-TTA-----G--CA--GGTCCC-------TTCT---TT-TCGTTAATAAAT-ATATT---ATACAT---TATC--TTTAC-AT---CCTG--CTTTTG--T----T-TAT---A-AA----TA-C--AGAAAATGGAAT-TTGG---AG-TTT-------TTTGGTCCTATCGTC--TTT-AGTTT-TGTT--A-TTTCAT-TA-ATATCT-CAT-T-TTT-TTAACATTTCAATT-AC-TG-CTCTCTTAAGGCCGC-GTATTCAACAAAATTTGT---TTCACTTT-TGAATTT-ATAAAGTATT--C--GAA-ACTT-AAGAAGGT-TACCAT-CA-TTG--TC-A-AA--AAGA-TCA-CATTACGAAGA-CCAAAACC--CTCATTAAATAA-----AGCTTTTC--C---AA-----AAAAAAAAGA--TTCT--TTGTTT-ATCAT-AATAAGATGGGTTATT-CC--ATA--CG----TGATCATAGAGAA--C---TTCTTT-GTCTTGA-AT--TTTA---TTTATAA--TCTT-ATCCAGCTATCTGAGA
finalCons : CGAAAT--AGAT-AGTAGTTTT--G--TAGGNATAATTCTAT-GC--AAA--A----TTTG-GAATT-GAA----CCAN-----TGAA-GTTTAGAT-T--CCTGG--GTTATTTTGAAGGGAA-GC-------TCAAAT--ATTT-TG-T-TCCATA---CTGC-CATCA----CTGA-AT---AAAATATT-----------GTTTCC----TTCC-----CATTT---TAGAAA---TA-CAA-G-TTAGCGGGTCCCTTCT-------------------TT-TCGTTAATAAAT-ATATT---ATACAT----ATC--TTTACAT----CCTG--CTTTTGT------T-TAT---A-AA----TAT---AGAAAATGGAAT-TTGGATTT------------TTTGGTCCTATCGTC--TTT-AGTTTT-GTT--A-TTTCAT-TA-ATATCCGCATTTTTTAGC----ATTTCAATT-AC-TG-CTCTCTTAAGGCCGC-GTATTCAACAAAATTTGT---TTCACTTT-TGAATCTAT-AAAGTATTCG----AA-ACTT-AAGAAGGT-TACCAT-CATTG---TCAAA----AAGAT-CA-CATTACGAAGA-CCAAAACC--CTCATTAAATAA------GCTTTTCC------------AAAAAAAAGAT--TCT--TTGTTT-ATCAT-AATA---TGGGTTATT-CCATACA--------TGATCATAGAGAAC-----TTCTTT-GTCTTGA-AT--TTTA---TTTATAA--TCTT-ATCCAGCTATCTGAGA
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|10 ): GTATAATAGTAACACATGGAATTTATTGTGTAAGGTTGAATACATGCACACCCACTGTATAATATTAGATTAAATCTGGTCTTGTCCTTTAAAGAGGTTTCAAAAATTATTTTTCAACTCTAAAGTAAAAAACCTCTTCTCTTTCATTTT
Alignments
lowQualScore : 2222 1111111 111111 111111 1111111 11 111111111111111 111111 11111 11111 44444444444444444444444444444444444 11 1111111 222 1111111 222 1111 1111 1 444444444444444444 11 11 1111 1 3333 2222 111111111 1 111 22222 111111 222222 1 11 2222222222 444444444444444 111 11 22222222222 111 22222222 111111 1 1 11 111 11 1 1 1
lowQualScore : 55 3 4 4444 55 1 6 3 999 0000000 3 3 777777 777777 44 0 3 55 555 3 0000000 44 2 55 3 99999 11 7777 3 6666 000000000000000 111111 0 00000 77777 0 777 4 4 66666666666666666666666666666666666 7777 00 0 8888 8 66 3333333 444 6666666 6 222 7777 9999 0 8 555555555555555555 1 8 22 11 88 99 0000 0 6 6 3333 1111 1 666666666 5 1 2 2 1 0 5 333 0 5 0 22222 1 999999 5 5 9999 5 555555 5 77 5 55 5 55 2 2 6 9 11 0 2222222222 0 333333333333333 111 11 8 88 77777777777 8 444 66666666 0 1 1 555555 0 3 0 33 777 88 7 3 2 5
lowQualScore : .. . . .... .. . . . ... ....... . . ...... ...... .. . . .. ... . ....... .. . .. . ..... .. .... . .... ............... ...... . ..... ..... . ... . . ................................... .... .. . .... . .. ....... ... ....... . ... .... .... . . .................. . . .. .. .. .. .... . . . .... .... . ......... . . . . . . . ... . . . ..... . ...... . . .... . ...... . .. . .. . .. . . . . .. . .......... . ............... ... .. . .. ........... . ... ........ . . . ...... . . . .. ... .. . . . .
lowQualScore : 55 6 6 9999 00 0 5 6 333 5555555 6 6 333333 333333 00 3 6 00 555 1 0000000 22 9 22 1 33333 33 7777 6 9999 888888888888888 555555 4 00000 00000 1 888 4 4 77777777777777777777777777777777777 3333 88 7 5555 9 11 1111111 222 8888888 7 000 0000 0000 6 0 000000000000000000 0 0 88 00 66 88 8888 8 7 7 2222 3333 0 555555555 2 0 5 2 4 8 2 888 6 7 1 77777 7 111111 7 7 7777 7 333333 7 99 7 99 7 22 0 5 7 3 00 8 6666666666 8 000000000000000 888 00 0 88 22222222222 0 000 88888888 6 0 4 000000 0 2 0 88 555 33 3 3 0 0
consensus : CGAAAT--AGAT-AGTAGTT--TTG--TAGGNATAATTCTAT-G-C-AAA--A----TTTG-GAATT-G--AA--CCAN-----TGAA-GTTTAGAT-T--CCTG-G-GTTATTTTGAAGGGAA-GC-------TCAAAT--ATTT-TG-T-TCCAT--A--CTGC-CATCA----CTGA-AT---AAAA-----T-A--T--T-GTTTCC----TTCC-----CATTT---TAGAAA---TA-CAA-G---TTAG--CG----GGTCCC-------TTCT---TT-TCGTTAATAAAT-ATATT----ATACAT-ATC--TTTAC-AT---CCT---CTTTTG--T----T-TAT---AAA----TA-C--AGAAAATGGAAT-TTGG--A----TT-T-------TTT-GGTCCTATCGTC--TTT-AGTTT-TGTT--A-TTTCAT-TA-ATATC-GCATTTTTT-AACATTTCAATT-AC-TG-CTCTCTTAAGGCCGC-GTATTCAACAAAATTTGT---TTCACTTT-TGAATTT-ATAAAGTATT--C--GAA-ACTT-AAGAAGGT-TACCAT-CA-TTG--TCA-AA--AA-GA-TCA-CATTACGAAGA-CCAAAACC--CTCATTAA-----AT-TAGCTTTTCC---------A-----AAAAAAAGA--TTCT--TTGTTT-ATCAT-AAT---A--TG---GGTTATT-CC---ATA--C-AT-GATCATAGAGAA--C---TTCTTT-GTCTTGA-AT--TTTA---TTTATAA--TCTT-ATCCAGCTATCTGAGA
Reference ( family-1001 ) : CGAAAT--AGAT-AGTAGTT--TTG--TAGGNATAATTCTAT-G-C-AAA--A----TTTG-GAATT-G--AA--CCAN-----TGAA-GTTTAGAT-T--CCTG-G-GTTATTTTGAAGGGAA-GC-------TCAAAT--ATTT-TG-T-TCCAT--A--CTGC-CATCA----CTGA-AT---AAAA-----T-A--T--T-GTTTCC----TTCC-----CATTT---TAGAAA---TA-CAA-G---TTAG--CG----GGTCCC-------TTCT---TT-TCGTTAATAAAT-ATATT----ATACAT-ATC--TTTAC-AT---CCTG--CTTTTG--T----T-TAT---AAA----TA-T--AGAAAATGGAAT-TTGG--A----TT-T-------TTT-GGTCCTATCGTC--TTT-AGTTT-TGTT--A-TTTCAT-TA-ATATCCGCATTTTTT-AGCATTTCAATT-AC-TG-CTCTCTTAAGGCCGC-GTATTCAACAAAATTTGT---TTCACTTT-TGAATCT-ATAAAGTATT--C--GAA-ACTT-AAGAAGGT-TACCAT-CA-TTG--TCA-AA--AA-GA-TCA-CATTACGAAGA-CCAAAACC--CTCATTAA-----AT-AAGCTTTTCC---------A-----AAAAAAAGA--TTCT--TTGTTT-ATCAT-AAT---A--TG---GGTTATT-CC---ATA--C-AT-GATCATAGAGAA--C---TTCTTT-GTCTTGA-AT--TTTA---TTTATAA--TCTT-ATCCAGCTATCTGAGA
gi|1 : T-AGTAGTC----G--TA--TACAAGTCTAT-CTC-AAA--A----TT---GAATTTG--AAG-CCATAGTTGTAAC-GCTTCTATAT--CCTGTG-GTT----TGGAGAGAA-GCGAGAGCCTCACATTAATTTGTG-TGTCCAT--AGGCTGCGCATCA----CTGG-AT---AAAA-----T-AATT--TAGTTTCTATTGTTCGATATGTACTT---TAGAAAATTCA-CAT-GCTTTTCG--TGCAATGTTCCCACCTATCTTTTACATT-TCGCTAATAAATTACATTGTATATACAT-ATCGGTTTAC-ACGTGCCTT--CTTTTG--TGTGGTGTATCTAAAA----TA-CTCAGAAAATGGAATATTGG--GAAAGTC-T-------TTT-GGTCCTCTTCTC--TTT-GGTT---GTT--A-ATT-AT-TC-ATATCATTATTTATT-AACATTTCCAAT-ACGTG-CTCTCT-AAGGCCACTGTATTCAACAAA--TTGT---TTTCCTTT-TG----T-A-AAAGTATT--C----A-ATCT-AAGCAGTT-TACCAT-CA-GTGAGTCATAATCAA-GAATCA-CATAGCAAAGA-C-AAACCC--CTCATTAATAATTAT-TAGCTTTTCTCCAATAAGTA-----AACAAAAGAATTTCT--TTGTTTTATTA--GAT---A--TGAAGGGTTATT-TCTCAACG--CTATTGATCATAGAAAATAC---TTCTTTTGTCTTGACAT--TTTA---TTTATAACGTC-T-AT-CAGCTATCTGAGA
gi|11 : aaggtcatgggctgtttCGAAAT--AAAT-AGCAGTT--T-G--TAGGGACAATTCTAT-G-C-AAA--A----TTTG-GAATT-G--AA--GCGCG----TGAA-GTTTAGAT-T--CCTG-G-TTTATTATAAATGGAA-GC-------CCAAAT--ATTT-TG-T-TCCAT--A--CTG--CATCA----CTTA-AT---AAAA-----T-A--T--T-GTTTTA----TTTC-----AATgatattcctttctcctataaaacatctgttatataagtgctcctgg
gi|12 : TATTCTACAATGTTTGTT--TTCATACC-TGAATC--ACAAAGTGCC--T--GAACGCTT-TTGAA-GT-TGCCAT-CA-GAA--TCA-AA--CA-GA-TCA-
gi|13 : tttctatgatagcctgccttagaccaaaaGAAAT--AGAT-TGTAGTT--T-G--TAGGTATACTTCTAT-G-C-AAA--T----TTTG-AAATT-G--AAG-CCAG-----TGAA-ATTTAGAT-T--CTTG-G-GTTATTTTGAAGGGAA-GT-------TCAAAT--ATTT-TT-T-TCCAT--A--CTGT-Cactcata
gi|14 : TTTTGAAGGGAA-GT-------TCAAAT--ATTT-TG-T-TCCAT--T--CTG--CATCA----ATGA-AT---GAAA-----T-A--T--A-GTTTTC----TTTC-----CATTT---T-GAAA---TA-CAA-G---GTAT--CG----GCTCC---------------TT-TAATTAATAATTAATATT----GTc
gi|15 : TTT-TT-T-TTCGT--A--TGGG-CATCG----CTAA-AT---GAAA-----T-A--T--T-GTTTTC----TTTC-----CATCT----AGAAA---TA-CAA-G---TAAA--CA----TGTCCC-------TTC---------ATTAATAAAT-ATATT----ATACAT-ATC--TTTAC-CT---CCT
gi|16 : tAAAA--AGAT-AAT-GTT--TAG--TGGGGATA---TTAT-G---AAGTTA----TCTG-ATATT-G--TA--CCAT-----TGAA-GTTTTGAC-T--CTTT-T-GTTATTTTAAAAGGAA-GC-------TCGAAT--ATTT-T
gi|17 : tt-GTATGTAACGTAATTTG----TTCACTTTCTGGAT----TAAGATATT--C-------CTTCAAGAGGGT-CACCA--CA-TT---TC------AA-GG-TCACCACT-CGAA-A-CCAAAtattcaa
gi|18 : ctatTTTTGAAGGGAA-GT-------TCAAAT--ATTT-TT-T-TCCAT--A--CTG
gi|2 : CGAAAT--AAAT-AGTAGTT--TTG--TAGGTATAAT-CTAT-G-CCAAA--A----TTTGCGAATT-GGGAA--GCAT-----TGAATGTTTAGAT-T--CCTG-G-GTTATTTTGAAGGGAAAGC-------TCAAAT--ATTT-TG-T-TCCATTTA--CTGC-CATCA----CTGA-ATTAAAAAA-----T-A--T--T-GTTTCT----TTCC-----CATTT---TAGAAA---TAACAA-G---TTAG--CA----AGTCCC-------TTCT---TT-TCATTAATGAAT-ATATT----ATACATTATC--TTTA--AT---CCTG--CTTGTG--T----T-TAT---AAA----TA-C--AGAAA-TGGAAT-TTGG--A----TT-T-------TTTTGGTCCTATCATC--TTTTAGTTT-TGTT--A-TTTCAT-TA-ATATCTGCATTTTTTTAACATTTTAATTTAC-TG-CTCTCTTAAGGCCAT-GTATTCAACAAAATTTGT---TTCACTTT-TGAATTT-GTAAAGTATT--C--AAA-ACTT-AAGAAAGT-TACCAT-CATTTG--TCA-AA--AA-GA-TCA-CATTACAAAGA-CCAAAACC--CTCATTAA-----ATAAAGCTTTTCC---------A-----AAAAAAAGA--TTCT--TTGTTT-ATCAT-AATAAGA--TG---GGTTATTCCC---ATATTT-AT-GATCATAGAAAA--C---TTCTTT-GTCTTGA-AT--GTTA---TTTATAA--TCTT-ATTCAGCTATCT-AGAt
gi|3 : AAATTAAGATCAGT-TTT--TTGATTAGGTATAATTCTATTG-C-AAA--AAAATTTTG-GAATT-G--AAAGCCAG-----TGAG-TTTTAGAT-TTTCGTG-GCGTTATTTTGAAGG-AA-GC-------TCAA-T--ATTT-TGAT-TCC-T--A--CTGC-CATCA----CTGA-AT---AAAA-----T-A--T--T-GTTTTCA---TTCat
gi|3 : cccgaatT----ATACAT-ATC--TTTAC-AT---CCTGTACTTATAGTT----T-TAT---AAA----TAAC--AGAAA-TGGAAT-TTGGGGA----TT-T-------TTT-GGTCCTATCATC--TT--AGTTT--GTTTAA-TTTCATATA-ATAT-----TTTTTT-A-TATTTAAA---AA-T---TTTATT---------GTATTCA-CAAACTTTGTCTCTTCACTTT-TGAATTTTATAAAGAATTATC--AAA-ACTT-AAATAAGTGTACCATTCA-TTT--GCA-AC--AA-GG--CA-CAATAC-AAGA-C-AAAACC--CTCATTAA-----AT-T-GCTTTTCC---------A-----AAAAAAGGA--TTCTTATTGTTT-ATCATAAAT---A--AGT--GGTCATT-CC---AT------------------AA--C---TTCTTT-GTCTTGA-AT--TTTA---TTTAattnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncttacatatacatatctttacatcctgtacttatagttttataaataacagaaatggaatttggggattttttggtcctatcatcttagtttgtttaatttcatataatatttttttatatttaaaaattttattgtattcacaaactttgtctcttcacttttgaattttataaagaattatcaaaacttaaataagtgtaccattcatttgcaacaaggcacaatacaagacaaaaccctcattaaattgcttttccaaaaaaaggattcttattgtttatcataaataagtggtcattccataacttctttgtcttgaattttatttaacaagt
gi|4 : cccgaataaattaagatcagttttttgattaggtataattctattgcaaaaaaattttggaattgaaagccagtgagttttagattttcgtggcgttattttgaaggaagctcaatattttgattcctactgccatcactgaataaaatattgttttcattcattnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncttacaAAAA--AGAT-AATTGTTAGTTG----GGGATTATTCTAT-G-A-AGT--A----TCTG-ATATT-GT-AA--CCA------TGAA-ATTTTGAC-T--CTTT-T-GTTATTTTAAAAGGAA-GC-------TCGAAT--ATTT-TA-T-TCCAT--T--CTAC-C-TCA----TTGACAT---TCAC-----C-A--T-----TCTCC----AT-C-----CATTT---T-GATA---CA-GAA-G---TGA---TT----GGTACC-------TT-T---TT-TTATCATTAAA--ATATT----GTACAA-ATC--TTTGCAAC---CCT----TTTTA--C----T-TGT---AAAGAATTA-T--AGAAAATTGATT-TAGG--G----AT-G-------AAT-GGTTTAATTGTCTTTTT-AATTTCTCTT--A-TAT--T-TACATGTC--CAGTTC-------TTTCAATG-AC-AGCCTGTTTTAGACCCGC-AAATTCTACAATATTTGT---TTTATACC-TGAATC--ACAAAG-GTT--CTGGAA-GCTT-TTGAA-GT-TGCCAT-CA---GA-ACA-AA--AC-GA-TCA--ATTAC--ATATCTTATACCGGCTC-TGAA-----AT-AA--CTTTAT---------A-----GAAGATAGA----AT--TTGTTT-ATTTT-AAT---ATTTG---GATTATA-CC---ATA--C-AT-GCTCAAAGGGGC--CTAATTCTTC-G--TTAG-ATGCTTCAGCGTTTATAA--TTTTGATCCAGCacaagt
gi|5 : T--AAAT-AGTAATT--ACA--TGGAAATA-TTCTGT-G-T-AAA-------TTTG-AAACT-T--AT--CCAC-----TGTA-TTTTAGAT-T--CCT--G-ATTGTTTTAAAAGGAA-GT-------TCAAAC--ATAT-TT-T-TCCAT--T--CT----AACT----CTG-------AAAACCTCCT-C--C--T-GTTT-C----TTCC-----CATTT---T---GA---TA-TGA-GT--TTAATTCT----GGT----------TACT---TT-ATGTT-ATCAAT-AGCTT----ATACAT-ATC--TTTAC-AG---CCT---TTTTTG--T----T-TTTG--AAA----TA-T--ATTAAATAGTAG-ATGA--A----TTATAGGTAAATGT-GGCCTTACAGCC--TT---ATTT-TGTC--C-TGTAAA-AA-AAAT--G---TCTTT-G----TTGAATT-ACTTG-CT---TTAAGCCTGC-ATATTCTATAAATATTAT---TTgaaaa
gi|6 : tatgAAAA--AGAT-AATTGTT--A-G--TGGGAATTATTCTAT-G-A-AGC--A----TCTG-AAATT-GT-AA--CCAT-----TGAA-ATTTTGAA-T--CTTG-T-GGTATTTTAAACGG-A-GC-------TCGAAA--ATTT-TA-T-TCCAT--T--CTAC-T-TCT----CC---AT-----------------------TTTCC-----ACC-----CATTT---T-GATA---CA-GAA-G-----AGA-TA----GGTACC-------TTTT---TA-TC--TATCAAA-------------ACAT------TTCA--AT---CC----CTTTTG--T----T-Tt
gi|7 : tT-TGTT--AATTTCAT-TA-ATATCTGTATTTTTT-AGCATTTCTAAT-AG-TG-CTCTCTTAAGGCCACAGTATTCAAAAAAATTTAT---TTCACCTA-TGAATTT-GTAAAGTATT--C--AAA-ACTT-AAGAAG---TACCAT-CA-TTG--TCA-AA--AAAGA-CC--CAT-ACGAAGA-CCAAAACC--CTCATTAA-----AA-TAGCTTT-CC---------AGAAAAAAAAAAAGA--TTCT--TTGTTG-ATCAT-AAT---A--CG---GATCATT-CC---ATA--T-GT-GATCATGGAGAA--C---TTATTtcttgtttttttaaagaatatagcaattgctttagggatgggtaacttaattttcctttt
gi|8 : T--AAAT-AGTAATTACTTG----GAAATA-TTCTGT-G-T-AAA--A----TTTG-AAACT-A--AT--CCAC-----TGCA-ATTTAGAT-T--CCTG-A-GTAGTTTTGTAAGGAA-GT-------TC-AAC--ATTT-TC-T-TTC----------C-AATCAAAATTTGA-GC---AATA-----TCA--TTCT-GTTT-C----TTCC-----CATTTGGATATAGA---TA-TAATG---TTGG-------------C-------TACT---TTATGGTTTATCAAT-AGACT----ATACATGATC--gt
gi|9 : GAAAT--AAAT-AGTAGTT--T-G--TAGGTATAATTCTAT-G-C-AAA--A----TTTG-GAATT-G--AAG-CCTG-----TGAA-GTTTAGAT-C--CTTG-G-GTTATTTTGAAGGGAA-GC-------TCAAAT--ATTT-TG-T-TCCAT--A--CTG--CATTA----CTGA-AT---AAAA-----T-A--T--T-GTTTCC----TTTC-----TA-TT---TAGAAA---TA-CAA-G---TTA---CA----AGTCCT-------TTCT---TT-TCATTACTAAAT-ATAAT----ATACAT-ATC--atagcttaaca
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|10 ): GTATAATAGTAACACATGGAATTTATTGTGTAAGGTTGAATACATGCACACCCACTGTATAATATTAGATTAAATCTGGTCTTGTCCTTTAAAGAGGTTTCAAAAATTATTTTTCAACTCTAAAGTAAAAAACCTCTTCTCTTTCATTTT