lowQualScore : 1111111 22222222222 1 1111 111 111 222222222222222 1111111 111111111111111 1111 111111 333333333333 3333333 11 1111111 111111 33 1111 1 88888888888888888888 11111 1111 22222 1111 5555555555555555555555555 11111 1111111 1111111 11111 22222222222 1111111 111111111111 22222222 111 4444444444444444444444444 11111111 11111111 1111111111111111111111 111111111111 222222222222222222 11111111 333333333333333333333 111 333333333333 111111 1111111111 33333333333333333333333 1111 99999999999999999999999999999999999999999999999999999999 111 1111111 111111 1111 111111 11 11
lowQualScore : 2 2 444 777777 0 2 55 5 2 2 33 44 3 3 777777 5555555 2 2 33 22222222222 4444 0 66 5555 2 3333 666 2 2 77 2 111 33 777777777 2 33 7777 444 33 4 888 2 5 999 333 2 33 444444444444444 22 4 2 3333333 2 2 777777777777777 2 444 888888 4444 4444 2 2 555 7 2 33 33 333333 44 3 999999999999 3 0000000 55 99999 4 2 7777777 888 666666 4 33 4 777 2222 4 8 5 0 33333333333333333333 55 4 00000 66 0000 66 888 33333 33 7 0000 5 1111111111111111111111111 4 777 22222 8 4 4 4 4 777 4 3333333 777 3333333 4 6 00000 11111111111 3333333 1 3 888888888888 666 00000000 44 000 4444444444444444444444444 3 55 3 44444444 4 0 8 4 55 33333333 99999 55 4 3 8888888888888888888888 1 555555555555 44 555555555555555555 22222222 222222222222222222222 4 777 4 111 777777777777 4 111111 3333333333 4 4 8888 55555555555555555555555 0000 4 777 44444444444444444444444444444444444444444444444444444444 4 777 4 4 111 4 2222222 4 000000 4 3 99 1 8888 3 6 3 3 555 999 7777 88888 3 2 1 33 2 1 7 4 444 66 111111 77 5 2 2 22
lowQualScore : . . ... ...... . . .. . . . .. .. . . ...... ....... . . .. ........... .... . .. .... . .... ... . . .. . ... .. ......... . .. .... ... .. . ... . . ... ... . .. ............... .. . . ....... . . ............... . ... ...... .... .... . . ... . . .. .. ...... .. . ............ . ....... .. ..... . . ....... ... ...... . .. . ... .... . . . . .................... .. . ..... .. .... .. ... ..... .. . .... . ......................... . ... ..... . . . . . ... . ....... ... ....... . . ..... ........... ....... . . ............ ... ........ .. ... ......................... . .. . ........ . . . . .. ........ ..... .. . . ...................... . ............ .. .................. ........ ..................... . ... . ... ............ . ...... .......... . . .... ....................... .... . ... ........................................................ . ... . . ... . ....... . ...... . . .. . .... . . . . ... ... .... ..... . . . .. . . . . ... .. ...... .. . . . ..
lowQualScore : 7 7 444 222222 1 5 99 0 7 7 77 66 6 6 555555 0000000 5 5 44 99999999999 1111 0 99 3333 5 5555 999 4 4 33 5 111 44 888888888 7 77 9999 000 77 9 111 7 3 555 222 5 44 000000000000000 99 9 5 0000000 5 5 999999999999999 4 111 222222 6666 7777 2 1 222 7 5 77 99 444444 66 3 444444444444 6 5555555 99 11111 0 0 6666666 888 000000 0 55 0 000 1111 0 9 0 0 44444444444444444444 66 0 33333 99 6666 44 888 11111 55 1 6666 0 2222222222222222222222222 0 000 99999 0 0 0 0 0 000 0 0000000 000 0000000 0 6 00000 77777777777 0000000 1 6 666666666666 444 44444444 66 444 8888888888888888888888888 6 00 6 55555555 0 8 0 0 00 22222222 11111 00 8 3 6666666666666666666666 0 333333333333 66 888888888888888888 44444444 777777777777777777777 0 000 0 000 555555555555 1 555555 8888888888 0 0 5555 11111111111111111111111 2222 0 000 77777777777777777777777777777777777777777777777777777777 0 888 0 0 000 0 3333333 0 555555 0 6 22 8 7777 3 3 3 3 888 222 1111 33333 1 9 6 44 7 1 0 7 111 77 888888 44 0 5 9 88
consensus : CCCCCTTCACACTCA-CG-GAT---T------TTTC-TTACG--AGTCCTT-ACGG-A-T--CTC--CGACT-C-GTAGTCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTCCGTAAA---T--CAC-------T-CG-T--AA--CA--AT---C--C-GTAAC-TA--T----CGTAAA-CTN--GTC--G-C-AA-GA-ACA--C--G----T----A-A--ACTG--CTCT-T--AAGAAN--CCG-TA-AAAC--ACT-CGT-AAAA--AATGTT--TTT--AAACGAG-TCTTTGC-GG-T--CA-GTTT-A-CGA-TA---------T--GT-TA---C-----GGATAAT-T----T-ACGAG-T--NGTTTACGGATTA-T--T--ACGAA---C--GC--CT-A--N---------GTG-ATA-------TT--AC-----GAT-TTCATTTGCG--T--CGGA---T----T-ACAATCGCTTTAC-GGA-T---TGTT---C-AGAGTCATT-AAGA-GC-ACTTTA----C--G-TA---CG---TATAGACACGATTACTTTACGA-GTACTTTTGGGC--TAGTGAAAGGAG----CAGTT-GT---A-----GAAATTGCTGATACA----ATTTT-AATCTGTACCATTC-----------T-GTTCCA-AGT-AA---TG----TCA-GTT-G-TCGA-A-TGA---TTA-T-------GC---AT-------AGCCAATTTCGAACACTTTTG-AGTCAAA-----AA-------C---GTACAC-------AAT-C------------G---TAACTAACTC-CC-----AAC--TA---TTCGTAACAGC--------------ACGTT-----ATC-AACA--CGT-TAAC--------AGGT-CGTGATGTAC-ACGTA-AA--AGC--------TAA-----GGTA--AAT-CGT---A------ACTT-TC-C---GTAAAGTACTCGTAA-C----------AAT--CCCTAAA--------A--AN-CT--CGTAAAA-T-G---TCGTAA-A-------------TT-G-CT-C---GTA-TT---TA-----T-C----GTGTTC------AC----TCG--AAAC-AA-ATCGT----AA----ATT--G---TTCG-----CCGCA---AAT-ACATCGCA---AGA------AC----TC-----------------G-TA----------ATA-A---A-CCGTAA-ATGG--CC-CGTA-AA---T-ACT----CT-TAAAT-CGT-TCTTAA-A-TAGCTCTTAA--AAGTG-TCTAAATCGTAAC-AATC---CG---TGT----AC-----TT-T-TACGGATTCG-TAG-AATNCGT-AAG---GAC-TCGT------AAG--AA-A-ATC-CG-TGAGTGTGA
Reference ( gi|2 ) : CCCCCTTCACACTCA-CG-GAT---T------TTTC-TTACG--AGTCCTT-ACGG-A-T--CTC--CGACT-C-GTAGTCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTTCCGTAAA---T--CAC-------T-CG-T--AA--CA--AT---C--T-GTAAC-TA--T----CGTAAA-CTT--GTT--G-C-AA-GA-ACA--C--G----T----A-A--ACTG--CTCT-T--AAGAAA--CCG-TA-AAAC--ACT-CGT-AAAA--AATGTT--TTT--AAACGAA-TCTTTGC-GG-T--TA-GTTT-A-CGA-TA---------T--GT-TA---C-----AGATAAT-T----T-ACGAG-T--TGTTTACGTATTA-T--T--ACGAA---C--GC--CT-A--T---------GTG-ATA-------TT--AC-----GAT-TTCATTTGTG--T--CGGA---T----T-ACAGTCGCTTTA--GGA-T---TGTT---C-AGAGTCATT-AAGA-GC-ACTTTA----CATG-TA---CG---TATAGACACGATTACTTTACGA-GTATTTTTGGGC--TAGTGAAAGGAG----CAGTT-GT---A-----GAAATTGCTGATGCA----ATTTT-AATCTGTACCATTC-----------T-GTTTCA-AGT-AA---TG----TCA-GTT-G-TCGA-A-TGA---TTA-T-------GC---AT-------AGCCAATTTCGAACACTTTTG-AGTCAAA-----AA-------C---GCACAC-------AAT-C------------G---TAACTAACTC-TC-----AAC--TA---TTCGTAACAG---------------ACGTT-----ATC-AACA--CGT-TAAC--------AGGT-CGTGATGTAC-ACGTA-AA--AGC--------TAA-----GGTA--AAT-CGT---A------ACTT-TC-C---GTAAAGTACTCGTAA-T----------AAT--CCCTAAA--------A--AT-CT--CGTAAAA-T-G---TCGTAA-A-------------TT-G-TT-C---GTA-TT---TA-----T-C----GTGTTC------AC----TCG--AAAC-AA-ATCGT----AA----ATT--G---TTTG-----CCGCA---AAT-ACATCGCA---AGA------AC----TT-----------------G-TG----------ATA-A---A-ACGTAA-ATGG--CC-CGTA-AA---T-ACT----CT-TAAAT-CAT-TCTTAA-A-TAGCTCTTAA--ATGTG-TCTGAATCGTAGC-AATC---CG---TGT----AC-----TT-T-TACGGATTTG-TAG-AATACGT-AAG---GAT-CCGT------AAG--AA-A-ATC-CA-TGAGTGTGA
gi|4 : CCCCCTTCACACTCA-CA-GAT---T------TTTC-TTATG--AGTCCTT-ACGG-A-T--CTC--CAACT-C-ATAGTCA
gi|3 : aCCCCCTTCACA-TCA-CG-GAT---T------TTTC-TAACG--AGTCCTTAACGG-A-T--CTC--CGACTCC-GTAGatcgcaggcatttgtaaatcactcgtcggtatccattaataactcgtcacaactcgcacacactcgtaaggatccatgaaagttgggctaaatttcttgacatgtcaaaaaaaaattatgattgtccacaaattttattttccgtaaatcactcgtaactatcataaactggttgcaagaacacgtaaactgctcttaagaattcgtaaaacactcgtaaaaaaaattttttaacgaatctttgcagttagtttacgatttgttagagatagttttcgagttgtttacagatcattgcgaatgcctaagtgatatttacgatctctttcacatcgggttacgatcgctttacagattgttcagagttattaagagcacttcaagtatagacatgattactttacgagtacatttgggctagtgaaaggagcagttttagaaattgctgatacaattttaatctgtaccatgctgttccaagtaatgtcagttgttgaatgattatacatagccaatttcgaacacttttgagtcaaaaacgtaaacaatcgtaattaactcccaactattcataacagcatgttatcaacatgttaacatgttgtgatgtacacgtaaaaactaaggtaaattgtaactttccgtaaagtactcgtaataatccctaaaagctcgtaaaatgtcataaattgttcataattatccgtgttcactcggaacaaatcgtaaatgtttaccgcaaatacatcgcaagaactcatagtaaatactcttaaatcattcttaaatagctctttaaagtggctgaatcgtaacaatctgtgtacttttacggattcatagaatccgtaagaaaaatctgtgag
gi|8 : cCCCCCTTCACACTCT-CG-GAT---T------TTTC-TTGCG--AGTCCTT-ACGG-A-T--CTC--CGACT-C-GTAGTCAgacatccgcaaagcaattcgtgcaaatactctcggaatccgttagacaactcgcacagctcgccaactcgaaggaatgtcaaaaaacaatttttagaattgtcgaatttaaacgcccggtaaagtgtcatgtcgtaacaagccgtaactaaaccgtaaaactgtcgacaaagagacacgtacagccgtactcctaagaaatccgtagaacactcgtaaaaaattattttaaacgaattctttgcggtagtttacgatatgttacagataatttacgcaccgtgtttacgtattattacgaacggcctaagtgcatatttacgatttcatttgcggtccggattaacaatcgctttggcggattgttcaagagtcattaaagacaactttacgtaagacacgatactgttcgagtattgtgggctgtgaaagggcagttgtagaatgctgatacaattttaaatctgtaccattctggttccatagtaatgttcagttgtcgaatgatatgcatagccattcgacactttgagtgaaaaacgcacacacgtaactaactccactaattccgtaacagcacgcgtaatcaaacacgtttacaggtcatgatgtacaacgtaaaacagctaaggtaatcgcaacttatcgcgtaaataccgtaataatccctaaagcgcgtaaaatgttcgtaaatggctcatatgtatccgtttcactcggacaacatcgtaaatgtgtgcgcaaatacatcgcaagaatcgtaataaaccgtaacatggccgtaaactactcttaaatcactctaaatagctcttaaaagtgttctgaatcgtagtaaccggtgtacttttacggatttattagaatacgtgaaggataacgtaagaaaaatccgcagtgtga
gi|10 : taCCCCCTTCACACTC-------------------------ACA--AATCCTT-ACGG-A-T--CTC--CGACT-C-GTAGTCAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnataacccgtaaatcactcgtaacaatccgcaacaatcgtaaactggtcgcaagaacacgtaaactgctcctaagaatccgtaaaacacttcaaaaatgttttttaacgaatctacgatatgttacagataatttacgagttgtttacgtattaatggacattttcggctgggtgaacatttaca
gi|15 : ataCCCCCTTCACATTCA-CG-GAT---T------TTTC-TAACG--AGTCCTT-ACGG-A-T--CTC--CGACT-C-GTAGACAatcgcaagtattcgtaaatcactcgtcggtatccgtaactcatcacagatcgcacacactcgtacattttttttactgtttcaatcagataccgtgccatgtaaagcgtaaattctgagcccaaccgtgaattttttgacatgtcaattttttttttatgattgtccacggatttcgttttccgtaaatcactcgtaacaatctgtaactatcgtaaactggtcgcaagaacacgtaaacactgctcttatgaatccgtaaaacactcgtaaaaagtg
gi|21 : CCCTCTTCATACTCA-TG-GAT---T------TTTC-GTACT--AGTAATT-ACGG-A-T--CTC--CGACT-C-GTAGTCAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaacatttttatgattgtcgaatttaacccgtaaatcattcgtaacaaaccgtaactatcgtaaactggtcgcaag
gi|19 : taCCACCTTCATACACA-CG-GAT---T------TT-C-TTACG--AGTCATT-TCGG-ATT--TTC--CGACT-C-GAAGTCAatcaaaagcattcgtaaatcactcgtcgg
gi|6 : aCCCTTCACACTTAATGAGAT---T------TTTCCTTACG--AGTCCTT-ACGG-A-T--CTC--CGACT-C-GTAGTCAaatcaagccggtaaatatctcgtcgactagtgttttatactttcatttgccacgactcgcagcaccactcgtaag
gi|25 : tTTCACACTCA-AG-AAT---T------TT-C-TTAAG--AGTCGTT-ATTG-A-T--CTC--CGATT-C-GTAGTCAatcgcaagcattcgtaaaccacccgtcgatannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntttccgtaaattacccgtaaatcactcgttagtaactatcgtaaacatggtccgcaaagaacactagagactgtttctagaatccgtacaaacactcgtaaaaagcgaatctttgcggttagtttacgatatattacggataatttacgggttgtttacggatcattacgaacgcctaattaagtgatatttacggtttcatttgcgtcggattacaatcgctttacggattgtacagagtcattaagagcactttacgcatagacacgattactttgggctagtgaaaggagcagttttagtaattgctgatacaattttaatctgtaccattaatgtcagttgtcgaatgattatgtatagccaatttcggacacttttgagtaaaaaatgtacacaatcgtaactaactcccaactattcgtaacagc
gi|3 : accacaTCACACT-G-CG-GAT---T------TTTC-TTACGTTA-TCCTTCACGT-A-T--atttgcaagcatt
gi|17 : ccccccttcacatcacggatttttctaacgagtccttaacggatctccgactccgtaggacatccgcaaagcaattcgtgcaaatactctcggaatccgttagacaactcgcacagctcgccaactcgaaggaatgtcaaaaaacaatttttagaattgtcgaatttaaacgcccggtaaagtgtcatgtcgtaacaagccgtaactaaaccgtaaaactgtcgacaaagagacacgtacagccgtactcctaagaaatccgtagaacactcgtaaaaaattattttaaacgaattctttgcggtagtttacgatatgttacagataatttacgcaccgtgtttacgtattattacgaacggcctaagtgcatatttacgatttcatttgcggtccggattaacaatcgctttggcggattgttcaagagtcattaaagacaactttacgtaagacacgatactgttcgagtattgtgggctgtgaaagggcagttgtagaatgctgatacaattttaaatctgtaccattctggttccatagtaatgttcagttgtcgaatgatatgcatagccattcgacactttgagtgaaaaacgcacacacgtaactaactccactaattccgtaacagcacgcgtaatcaaacacgtttacaggtcatgatgtacaacgtaaaacagctaaggtaatcgcaacttatcgcgtaaataccgtaataatccctaaagcgcgtaaaatgttcgtaaatggctcatatgtatccgtttcactcggacaacatcgtaaatgtgtgcgcaaatacatcgcaagaatcgtaataaaccgtaacatggccgtaaactactcttaaatcactctaaatagctcttaaaagtgttctgaatcgtagtaaccggtgtacttttacggatttattagaACACTCA--G-GAT---TTTTCTTTTTC-TGACG--AATCTTT-ACGC-A-TTACTT--CAAAT-CAGTA
gi|4 : atgctaaccttaaatgctttgcaagaatcaagtagcaataaaccttaaatggcctcatattgctcgtaaatacactaaacattatttaaagtgtctaaatcgtaacaatccgatgtacgtaCTCA-CA-GAT---T------TTTC-TTACG--GATTC-T-ATGA-A-T--C
gi|14 : acccccttcacactcacagatttttcttatgagtccttacggatctccaactcatagtcaatcgcaggcatttgtaaatcactcgtcggtatccattaataactcgtcacaactcgcacacactcgtaaggatccatgaaagttgggctaaatttcttgacatgtcaaaaaaaaattatgattgtccacaaattttattttccgtaaatcactcgtaactatcataaactggttgcaagaacacgtaaactgctcttaagaattcgtaaaacactcgtaaaaaaaattttttaacgaatctttgcagttagtttacgatttgttagagatagttttcgagttgtttacagatcattgcgaatgcctaagtgatatttacgatctctttcacatcgggttacgatcgctttacagattgttcagagttattaagagcacttcaagtatagacatgattactttacgagtacatttgggctagtgaaaggagcagttttagaaattgctgatacaattttaatctgtaccatgctgttccaagtaatgtcagttgttgaatgattatacatagccaatttcgaacacttttgagtcaaaaacgtaaacaatcgtaattaactcccaactattcataacagcatgttatcaacatgttaacatgttgtgatgtacacgtaaaaactaaggtaaattgtaactttccgtaaagtactcgtaataatccctaaaagctcgtaaaatgtcataaattgttcataattatccgtgttcactcggaacaaatcgtaaatgtttaccgcaaatacatcgcaagaactcatagtaaatactcttaaatcattcttaaatagctctttaaagtggctgaatcgtaacaatctgtgtacttttacgTCA-CG-GATTTTT------TTTT-TTACG--AATCCTT-A
gi|23 : agctatgctaagtcgtaacttagtaatgtactcgtaacaatccctataaagctcgtaaactgtcgtaaattgctcgtatttattcgttttcactcgaaagaaatcgtaaatgttcgccgtaaatgcattgcaagaactcgtaataaatcgtaaatggtctgtaaatactccgttcttaaataactttttaaagtgtctaaatcgtaacaatccatgtacttttacggaA-CG-GAT---T------TTGT-TTACG--GATCCTT-ACGT-A-T---TC--Ca
gi|5 : tagttcttaaaagtgtgtaaatcgtaacaattcgtgtacttttacggatttgt-CG-GAT---T------TTTC-TTACG--GATCCTT-ACGT-A-T--
gi|1 : ttgtccacggatttccttttccgtaaataatccgtaaatcacttgtaacaatccgtaactatcgtaaactggtcgtaagaacacgtaaactgctcttaagaatccgtaaaacactcgtaaaaatgtttttaaacgaatctttgcggttagtttacgatatgttacagaaaatttacgagttgttgacgtattatattacgaacgcctaagtgatagatctatttacgatttcatttgcgtcggattacaatcgttttacggattgttcagagtcattaagaacacttacgtatagacacgattactttacgagtatttttgggctagtaaaaggagcagttgtagaaattgctgatacaattttaatctgttccatgcaatgtcagttgtcgaatgatttgcatagccaatttcgaacacttttgagtcaaaaacgcacacaatcgtaactaaccccaactattcgcaacagtacgttatcaatacgttaacaggtcgtgatgtacacgtaaaagctaagataaatcgtaatttccgtaaagtactcgtaataatccctaaaaagctcgtaaaatgtcgtaaattcgctcgcatttatccgtgttcactcggaacaaatcgtaaatgtttgccgcaaatacttcgcaataaccgtatgaaccataaatggcccgtaaatactcttgaatcgttcttaaataactcttaaaagtgtctgaatcgtagcaatccgtgtagttttacggatttgtagaT---T------TTTC-TTACGT-AGTCCTT-ACGGAA-T--CTCAGAGACT-C-GTAGTCA
gi|4 : TTTTCCGTAAA---T--CAC-------T-CG-T--AA--C-------------------TA--T----CATAAA-CTG--GTT--G-C-AA-GA-ACA--C--G----T----A-A--ACTG--CTCT-T--AAGAAT--TCG-TA-AAAC--ACT-CGT-AAAA--AAAATT--TTT--TAACGAA-TCTTTGC-AG-T--TA-GTTT-A-CGA-TT---------T--GT-TA---G-----AGATAGT-T----T-TCGAG-T--TGTTTACAGATCA-T--T--GCGAA---T--GC--CT-A--A---------GTG-ATA-------TTT-AC-----GAT-CTCTTTCACA--T--CGGG---T----T-ACGATCGCTTTAC-AGA-T---TGTT---C-AGAGTTATT-AAGA-GC-ACTTCA----------A----G---TATAGACATGATTACTTTACGA-GTACATTTGGGC--TAGTGAAAGGAG----CAGTT-TT---A-----GAAATTGCTGATACA----ATTTT-AATCTGTACCATGC-----------T-GTTCCA-AGT-AA---TG----TCA-GTT-G-TTGA-A-TGA---TTA-T-------AC---AT-------AGCCAATTTCGAACACTTTTG-AGTCAAA-----AA-------C---GTAAAC-------AAT-C------------G---TAATTAACTC-CC-----AAC--TA---TTCATAACAGC--------------ATGTT-----ATC-AACA--TGT-TAAC--------ATGT-TGTGATGTAC-ACGTA-AA--AAC--------TAA-----GGTA--AAT-TGT---A------ACTT-TC-C---GTAAAGTACTCGTAA-T----------AAT--CCCTAAA--------A--G--CT--CGTAAAA-T-G---TCATAA-A-------------TT-G-TT-C---ATA-AT---TA-----TCC----GTGTTC------AC----TCG--GAAC-AA-ATCGT----AA----A-T--G---TTTA-----CCGCA---AAT-ACATCGCA---AGA------AC----T-------------------------------------------CATA------------GTA-AA---T-ACT----CT-TAAAT-CAT-TCTTAA-A-TAGCTCTTTA--AAGTG-GCTGAATCGTAAC-AATC---TG---TGT----AC-----TT-T-TACGGATTCA-TAG-AATCCGT-AAGAAAAAT-CTGT------GAG--atcgcaaacagtacgctattttcgtaaatcagctggtcgtcggatagaatcgttaagtagtcctcttcagtgcatgtctcggcacacagctgcgttcaggacagtgctctgtgaaaggttgggagacatcctgatatctatatttaaatagagcatgtcaaccaacttaatggtttttacgaagctctgtccacggatttcgtgtcccatcccgttaaattaccccgatttaaacctcaacgtaaccgtaactatcgtaaaactttggtcgcaaaatcatcgggtataaacctgtaacgaaaatccgtataaacacttcgtaaaacgcgaaatctttgctggtcttagttttacgatattaatatacggataactcccttacgaggttgtttacggacaatacgaaaactgctgctataaaatataagtgataatccttccaccctcgggtgttcacctatttttcgtataaaatcgctttacggataactgtaacagagttatttaagatgccacttttaactctatagacacgattacatttcccggcaatagtgaaaagagaacgcagttagtaacaatgaaacttatccacaagattttaatctgtgaggccgatggtaaatgtggttcttagtttgtcgaatgacatttactgccgtatagccaattcggacactgttgtagttaaaaaaataatacttaacacccatttcgaaataactaactccggtgaaactacatttaataacagtaacaccaagaaaacacgtttaactatcaacactgcaacaggtacgtgatgtacaacgtagaaagcatagatattaatacagggtatgagtgcgtaaactccattttccgtggtaaagtactccaataattctcctaagatgaacccgtaaaattgttctaaaatatggattaaggttgctcataatattgtagtcgtgttcactacttcaacaaacaaatcgtggagaaattgtttagtgctccgcacccaatacatcgcaagaaccttacatcgtagtatcaccgtgagaactcgtaataaaccgtaaatggcccgtacatgctcataaatcactaagtaggtctttaaagtgtctgaattgtaactacccgtgtacttttacggatttgtagaatactttaggatccgtaagaaa
gi|10 : acccccttcacactcacagatttttcttatgagtccttacggatctccaactcatagtcaatcgcaggcatttgtaaatcactcgtcggtatccattaataactcgtcacaactcgcacacactcgtaaggatccatgaaagttgggctaaatttcttgacatgtcaaaaaaaaattatgattgtccacaaattttaTTTTCCGTAAA---T--CAC-------T-CG-T--AA--CA--AT---C--T-GTAAC-TA--T----CGTAAA-CTG--GTC--G-C-AA-GA-ACA--C--G----T----A-AACACTG--CTCT-T--ATGAAT--CCG-TA-AAAC--ACT-CGT-AAAA--AGTG
gi|12 : atacccccttcacactcacaaatccttacggatctccgactcgtagtcaatcgcaagtattcgtaaatcactcgtcggtatccgtaactcatcacagatcgcacacactcgtacattttttttactgtttcaatcagataccgtgccatgtaaagcgtaaattctgagcccaaccgtgaattttttgacatgtcaattttttttttatgattgtccacggatttcgTTTTCCGTAAA---T--AAT-------T-TACT--AA--AA--A----C--T-TT--C-TT--T----CAT---------GTC--T-T-AA-TA-AC------G----T----A-A--ACTG--CTCG-TAAAAGAAT--CCGTTT-TAAC--ATT-AGT---AA--AACTTT--TTTAAAAACAAA---GTTAC-GG-T--TA--CTT-ATCAATTA---------T--GT-TG---C-----A-ATAGT-T----T-ACGTG-T--TATATACAGATTA-T--TTAAC-AA---T--GC--GT-A--G---------GTG-ATAT------TT--AC-----GAT-TACA-TCAAG--T--CGGG---TAGCCA-ACAGTC---TCAC-GGA-T---TGT------ATAGTCACT-AA
gi|6 : cgtaaaggttccggaaagtggtgaacattttttacgatgtcaaaaaatcaacgattgtccaacggattttaTTTCCGTAAA---T--TAC-------C-CG-T--AAATCA--CT---CGTTAGTAAC-TA--T----CGTAAA-CAT--GGTCCG-C-AAAGA-ACA--CTAG---------A-G--ACTG--TTTC-T--A-GAAT--CCG-TACAAAC--ACT-CGT-AAAA--AG--------------CGAA-TCTTTGC-GG-T--TA-GTTT-A-CGA-TA---------T--AT-TA---C-----GGATAAT-T----T-ACGGG-T--TGTTTACGGATCA-T--T--ACGAA---C--GC--CT-AATTAA-------GTG-ATA-------TTT-AC-----GGT-TTCATTTGCG--T--CGGA---T----T-ACAATCGCTTTAC-GGA-T---TGTA---C-AGAGTCATT-AAGA-GC-ACTTTA----C----------G---CATAGACACGATTACTTT-------------GGGC--TAGTGAAAGGAG----CAGTT-TT---A-----GTAATTGCTGATACA----ATTTT-AATCTGTACCATT-------------------------AA---TG----TCA-GTT-G-TCGA-A-TGA---TTA-T-------GT---AT-------AGCCAATTTCGGACACTTTTG-AGTAAAA-----AA-------T---GTACAC-------AAT-C------------G---TAACTAACTC-CC-----AAC--TA---TTCGTAACAG---------------
gi|5 : tcccttcacacttaatgagatttttccttacgagtccttacggatctccgactcgtagtcaatcgcaagcattcgtaaaccacccgtcgatannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTCCGTAAA---T--CAC-------T-TG-T--AA--CA--AT---C--C-GTAAC-TA--T----CGTAAA-CTG--GTC--G-T-AA-GA-ACA--C--G----T----A-A--ACTG--CTCT-T--AAGAAT--CCG-TA-AAAC--ACT-CGT-AAAA--A-TGTT--TTT--AAACGAA-TCTTTGC-GG-T--TA-GTTT-A-CGA-TA---------T--GT-TA---C-----AGAAAAT-T----T-ACGAG-T--TGTTGACGTATTA-TATT--ACGAA---C--GC--CT-A--A---------GTG-ATAGATCTATTT--AC-----GAT-TTCATTTGCG--T--CGGA---T----T-ACAATCGTTTTAC-GGA-T---TGTT---C-AGAGTCATT-AAGA-AC-ACTT------------A---CG---TATAGACACGATTACTTTACGA-GTATTTTTGGGC--TAGTAAAAGGAG----CAGTT-GT---A-----GAAATTGCTGATACA----ATTTT-AATCTGTTCCAT-----------------------GC-AA---TG----TCA-GTT-G-TCGA-A-TGA---TT--T-------GC---AT-------AGCCAATTTCGAACACTTTTG-AGTCAAA-----AA-------C---GCACAC-------AAT-C------------G---TAACTAACCC--C-----AAC--TA---TTCGCAACAGT--------------ACGTT-----ATC-AATA--CGT-TAAC--------AGGT-CGTGATGTAC-ACGTA-AA--AGC--------TAA-----GATA--AAT-CGT---A------A-TT-TC-C---GTAAAGTACTCGTAA-T----------AAT--CCCTAAA--------A--AG-CT--CGTAAAA-T-G---TCGTAA-A-------------TTCG-CT-C---GCA-TT---TA-----T-CC---GTGTTC------AC----TCG--GAAC-AA-ATCGT----AA----AT---G---TTTG-----CCGCA---AAT-ACTTCGCA---ATA------AC----C------------------G-T-----------ATG-A---A-CCATAA-ATGG--CC-CGTA-AA---T-ACT----CT-TGAAT-CGT-TCTTAA-A-TAACTCTTAA--AAGTG-TCTGAATCGTAGC-AATC---CG---TGT----AG-----TT-T-TACGGATTTG-TAG-AATACGT-AAG---GAT-CCGT------AAGA-AA-A-ATC-Cc
gi|6 : ttgtccacggatttccttttccgtaaataaTCCGTAAA---C--AAC-------C-CG-T--AA---ATTAT---C--C-GTAATATA--T----CGTAAA-CTA--ACC--G-C-AA-AG-ATT--C--G---------------CT----TTT-T--ACGAGTGTTTG-TA-CGG---ATT-C-T-AGAA--ACAGTC--TCT--AG-TGT--TCTTTGC-GGAC--CATGTTT-A-CGA-TA------------GT-TA---CTAACGAG-TGAT-T----T-ACGGG-T--AATTTACGg
gi|8 : tcccttcacacttaatgagatttttccttacgagtccttacggatctccgactcgtagtcaatcgcaagcattcgtaaaccacccgtcgatannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntttcCCGTAAA---T--CAC-------T-CG-T--AA--CA--AT---C--C-GCAAC-AA--T----CGTAAA-CTG--GTC--G-C-AA-GA-ACA--C--G----T----A-A--ACTG--CTCC-T--AAGAAT--CCG-TA-AAAC--ACT---T-CAAA--AATGTT--TTT--TAACGAA-TCT-------------------A-CGA-TA---------T--GT-TA---C-----AGATAAT-T----T-ACGAG-T--TGTTTACGTATTA-tcattacgaacgcctaattaagtgatatttacggtttcatttgcgtcggattacaatcgctttacggattgtacagagtcattaagagcactttacgcatagacacgattactttgggctagtgaaaggagcagttttagtaattgctgatacaattttaatctgtaccattaatgtcagttgtcgaatgattatgtatagccaatttcggacacttttgagtaaaaaatgtacacaatcgtaactaactcccaactattcgtaacagc
gi|15 : tacccccttcacactctcggatttttcttgcgagtccttacggatctccgactcgtagtcannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnataacCCGTAAA---T--CAT-------T-CG-T--AA--CA--AA---C--C-GTAAC-TA--T----CGTAAA-CTG--GTC--G-C-AA-Gatggacattttcggctgggtgaacatttaca
gi|5 : cccccttcacattcacggatttttctaacgagtccttacggatctccgactcgtagacannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaacatttttatgattgtcgaatttaacCGTCAA---C--AAC-------T-CG-T--AA------ATTTTC--T-GTAACATA--T----CGTAAA-CTA--ACC--G-C-AA-AG-ATT--C--G----TTTAAA-A--AC-A--TTTT-T--ACGAG----TG-TT-TTACGGATT-CTT-AAGA--GCAGTT--T------ACGTG-TTCTTAC-GA-C--CA-GTTT-A-CGA-TA------------GT-TA---C-----GGAT--TGT----T-ACAAG-T--GATTTACGGATTATT--T--ACGGA---
gi|3 : ttgtccacggatttcctttCGTAAA------CACGG-----TGCG-T--AA---ATTAT---C--T-GTAACATA--T----CGTAAA-C-T--ACC--G-CAAA-GA-ATT--C--G----T----tattatattacgaacgcctaagtgatagatctatttacgatttcatttgcgtcggattacaatcgttttacggattgttcagagtcattaagaacacttacgtatagacacgattactttacgagtatttttgggctagtaaaaggagcagttgtagaaattgctgatacaattttaatctgttccatgcaatgtcagttgtcgaatgatttgcatagccaatttcgaacacttttgagtcaaaaacgcacacaatcgtaactaaccccaactattcgcaacagtacgttatcaatacgttaacaggtcgtgatgtacacgtaaaagctaagataaatcgtaatttccgtaaagtactcgtaataatccctaaaaagctcgtaaaatgtcgtaaattcgctcgcatttatccgtgttcactcggaacaaatcgtaaatgtttgccgcaaatacttcgcaataaccgtatgaaccataaatggcccgtaaatactcttgaatcgttcttaaataactcttaaaagtgtctgaatcgtagcaatccgtgtagttttacggatttgtagaatacgtaaggatccgtaagaaaaatccg
gi|8 : ccccccttcacatcacggatttttctaacgagtccttaacggatctccgactccgtaggacatccgcaaagcaattcgtgcaaatactctcggaatccgttagacaactcgcacagctcgccaactcgaaggaatgtcaaaaaacaatttttagaattgtcgaatttaaacgcccggtaaagtgtcatgtcgtaacaagccgtaactaaaccgtaaaactgtcgacaaagagacacgtacagccgtactcctaagaaatccgtagaacactcgtaaaaaattattttaaCGTAAA---C--AAC-------T-CG-T--AA---ATTAT---C--T-GTAACATA--T----CGTAGA-TTC--GTT--A---AA-AA-ACATTT--T----T----G-A--AGTG---TTT-T--ACGGAT--TCT-TA-GGA--------GC-A--------GTT--T------ACGTG-TTCTTGC-GA-C--CA-GTTT-A-CGA-T----------T--GT-TG---C-----GGAT--TGT----T-ACGAG-T--GATTTACGGGTTA-T--tattattacgaacggcctaagtgcatatttacgatttcatttgcggtccggattaacaatcgctttggcggattgttcaagagtcattaaagacaactttacgtaagacacgatactgttcgagtattgtgggctgtgaaagggcagttgtagaatgctgatacaattttaaatctgtaccattctggttccatagtaatgttcagttgtcgaatgatatgcatagccattcgacactttgagtgaaaaacgcacacacgtaactaactccactaattccgtaacagcacgcgtaatcaaacacgtttacaggtcatgatgtacaacgtaaaacagctaaggtaatcgcaacttatcgcgtaaataccgtaataatccctaaagcgcgtaaaatgttcgtaaatggctcatatgtatccgtttcactcggacaacatcgtaaatgtgtgcgcaaatacatcgcaagaatcgtaataaaccgtaacatggccgtaaactactcttaaatcactctaaatagctcttaaaagtgttctgaatcgtagtaaccggtgtacttttacggatttattagaatacgtgaaggataacgtaagaaaaatccgcagtgtga
gi|12 : tacccccttcacactctcggatttttcttgcgagtccttacggatctccgactcgtagtcannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnCGTAAA---TATCACCTACGCAT-TG-TTAAA--TA--AT---C--T-GTA---TA--TAACACGTAAA-CT---ATT--G-C-AA---------C--A----T----A-A---TTG--AT------AAGTAA--CCG-TA-A------CT-T-----------TGTT--TTT--AAAAAAG-T-----------------TTT-A-CTA--A---------T--GT-TAAAAC-----GGATTCT-T----TTACGAG-C--AGTTTACG--TTA-T--T--AAGAtattaatggacattttcggctgggtgaacatttaca
gi|3 : cgtaaaggttccggaaagtggtgaacattttttacgatgtcaaaaaatcaacgattgtccaacggattttattttccgtaaataatttactaaaaactttctttcatgGTAAAGTGT--CATG------T-CG-T--AA--CA--AG---C--C-GTAAC-TAAAC----CGTAAA-ACT--GTC--GAC-AAAGAGACA--C--G----T----ACA--GCCGTACTCC-T--AAGAAAT-CCG-TA-GAAC--ACT-CGT-AAAA--AATTAT--TTT--AAACGAATTCTTTGC-GG----TA-GTTT-A-CGA-TA---------T--GT-TA---C-----AGATAAT-T----T-ACGCA-CCGTGTTTACGTATTA-T--T--ACGAA---CG-GC--CT-A--A---------GTGCATAT------TT--AC-----GAT-TTCATTTGCGGTC--CGGA---T----TAACAATCGCTTTGGCGGA-T---TGTT---CAAGAGTCATT-AAAG-ACAACTTTA----C--G-TA-----------AGACACGA-TACTGTTCGA-GTA-TTGTGGGC--T-GTGAAAGG-G----CAGTT-GT---A-----GAA--TGCTGATACA----ATTTTAAATCTGTACCATTC-----------TGGTTCCATAGT-AA---TGT---TCA-GTT-G-TCGA-A-TGA----TA-T-------GC---AT-------AGCCA--TTCG-ACAC-TTTG-AGTGAAA-----AA-------C---GCACAC-------A---C------------G---TAACTAACTC-C-------AC--TAAT-TCCGTAACAGCAC------------GCGTA-----ATCAAACA--CGT-TTAC--------AGGT-CATGATGTACAACGTA-AAACAGC--------TAA-----GGT---AAT-CGC---A------ACTTATCGC---GTAAA-TAC-CGTAA-T----------AAT--CCCTAAA--------G-----CG--CGTAAAA-T-GT--TCGTAA-A-------------TG-G-CT-C---ATA-TG---TA-----TCC----GT-TTC------AC----TCG---GAC-AACATCGT----AA----A-T--G---TGTG------CGCA---AAT-ACATCGCA---AGA------A-----TC-----------------G-TA----------ATA-A---A-CCGTAACATGG---C-CGTA-AAC--T-ACT----CT-TAAAT-CAC-TC-TAA-A-TAGCTCTTAA--AAGTGTTCTGAATCGTAGT-AACC---GG---TGT----AC-----TT-T-TACGGATTTATTAG-AATACGTGAAG---GATAACGT------AAGA-AA-A-ATC-CG-C-AGTGTGAattacatcaagtcgggtagccaacagtctcacggattgtatagtcactaa
gi|4 : ccccccttcacatcacggatttttctaacgagtccttaacggatctccgactccgtaggacatccgcaaagcaattcgtgcaaatactctcggaatccgttagacaactcgcacagctcgccaactcgaaggaatgtcaaaaaacaatttttagaattgtcgaatttaaacgcccg--CAT-------T-CG-C--AA--TG--AT---C--T-GTAAA-CAACT----CGAAAA-CTA--TCT--C-T-AA-CA-AAT--C--G----T----A-A--ACT---------------AA--CTG-CA-AAG---ATT-CGTTAAAA--AATTTT--TTT--TA-CGAG-T--------G-T--T----TT-A-CGA---------------AT-T----------------C-T----T-AAGAG-C--AGTTTACGTGTTC-T--T--GC-AA---CCAGT--TT-A-------------TG-ATAG------TT--AC-----GA
gi|14 : acccccttcacactcacagatttttcttatgagtccttacggatctccaactcatagtcaatcgcaggcatttgtaaatcactcgtcggtatccattaataactcgtcacaactcgcacacactcgtaaggatccatgaaagttgggctaaatttcttgacatgtcaaaaaaaaattatgattgtccacaaattttattttccgtaaatcacAC-------T-CG-T--AA--CA--ATCC-C--T-ATAAA-GC--T----CGTAAA-C-T--GT------------------C--G----T----A-A--ATTG--CTCG-T--Acctaagtgatatttacgatctctttcacatcgggttacgatcgctttacagattgttcagagttattaagagcacttcaagtatagacatgattactttacgagtacatttgggctagtgaaaggagcagttttagaaattgctgatacaattttaatctgtaccatgctgttccaagtaatgtcagttgttgaatgattatacatagccaatttcgaacacttttgagtcaaaaacgtaaacaatcgtaattaactcccaactattcataacagcatgttatcaacatgttaacatgttgtgatgtacacgtaaaaactaaggtaaattgtaactttccgtaaagtactcgtaataatccctaaaagctcgtaaaatgtcataaattgttcataattatccgtgttcactcggaacaaatcgtaaatgtttaccgcaaatacatcgcaagaactcatagtaaatactcttaaatcattcttaaatagctctttaaagtggctgaatcgtaacaatctgtgtacttttacggattcatagaatccgtaagaaaaatctgtgag
gi|1 : agctatgctaagtcgtaacttagtaatgt-CG-T--AA--C-----------C-GTAAC-TA--T----CGTAAAACTTTGGTC--G-C-AA-AA-TCAT-C--GGGTAT----A-A--AC----CTGT-A--ACGAAAATCCG-TATAAAC--ACTTCGT-AAAA--CGCG-------------AAA-TCTTTGCTGG-TCTTA-GTTTTA-CGA-TA---------TTAATATA---C-----GGATAAC-TCCCTT-ACGAGGT--TGTTTACGGACAA-T-----ACGAAAACT--GCTGCT-A--TAAAATATAAGTG-ATAATCC---TTCCACCCTCGGGTGTTCACCTATT--TTTCGTA---T------AAAATCGCTTTAC-GGA-TAACTGTAA--C-AGAGTTATTTAAGATGCCACTTT----------TAACTC----TATAGACACGATTAC----------ATTTCCCGGCAATAGTGAAAAGAGAACGCAGTTAGT---AACAATGAAA---CTTATCCACAAGATTTT-AATCTGTG--AGGC-----------C-GAT----GGT-AAATGTGGTTCTTA-GTTTG-TCGA-A-TGACATTTACT-------GCCGTAT-------AGCCAATT-CGGACACTGTTGTAGTTAAA-----AAAATAATACTTAACACCC-------ATTTC------------GAAATAACTAACTC--CGGTGAAAC--TACATTTAATAACAGTAACACCAAGAAAACACGTTTAACTATC-AACA--CTG-CAAC--------AGGTACGTGATGTACAACGTAGAA--AGCATAGATATTAATACAGGGTATGAGTGCGT---AAACTCCATTT-TC-CGTGGTAAAGTACTC-CAA-T----------AATTCTCCTAAG--------ATGAA-CC--CGTAAAATT-G---TTCTAA-AATATGGATTAAGGTT-G-CT-CATAATA-TTG--TAG----T-C----GTGTTC------ACTACTTCAACAAAC-AA-ATCGTGGAGAA----ATT--G---TTTAGTGCTCCGCACCCAAT-ACATCGCA---AGA------AC----CTTACATCGTAGTATCACCG-TGAGAACTCGTAATA-A---A-CCGTAA-ATGG--CC-CGTA-CA---T-GCT----CA-TAAAT-CA----CTAA-G-TAGGTCTTTA--AAGTG-TCTGAATTGTAAC-TACC---CG---TGT----AC-----TT-T-TACGGATTTG-TAG-AATACTT-TAG---GAT-CCGT------AAG--AA-A-tttattcgttttcactcgaaagaaatcgtaaatgttcgccgtaaatgcattgcaagaactcgtaataaatcgtaaatggtctgtaaatactccgttcttaaataactttttaaagtgtctaaatcgtaacaatccatgtacttttacggataaggattcgtaaaaaaaaaaatccgtgaa
gi|5 : tttttcttacgtagtccttacggaatctcagagactcgtagtcaatcgcaaacagtacgctattttcgtaaatcagctggtcgtcggatagaatcgttaagtagtcctcttcagtgcatgtctcggcacacagctgcgttcaggacagtgctctgtgaaaggttgggagacatcctgatatctatatttaaatagagcatgtcaaccaacttaatggtttttacgaagctctgtccacggatttcgtgtcccatcccgttaaattaccccgatttaaacctcaa-C-AA-CA-ACT--C--G----T----A-A--ATT---TTCTGT--AACATA--TCG-TA-AACT--AAC-CGC-AAAG--A---TTCGTTT--AAA--AA-CATTT--------------TT-A-CGAGTG---------T--TT-TA---C-----GGAT--TCT----T-AAGAG-C--AGTTTACGTGTTC-T--T--ACGA-----------CC-A------------GT------------TT--AC-----GAT----AGTTA-------CGGATTGT----T-ACAAGTGATTTAC-GGA-T---TATT---T-A
gi|10 : ttgtccacggatttccttttccgGAAA--CAG-TA-AAA-------------AA--AATGT----------ACGAG-TGTGTGC-GA-T--CT-GT------GA-TG---------A--GT-TA---C-----GGAT-AC-C----G-ACGAG-T--GATTTACGAATAC-T--T--GCGAT---T--GA--CT-A--C---------Gacgtattatattacgaacgcctaagtgatagatctatttacgatttcatttgcgtcggattacaatcgttttacggattgttcagagtcattaagaacacttacgtatagacacgattactttacgagtatttttgggctagtaaaaggagcagttgtagaaattgctgatacaattttaatctgttccatgcaatgtcagttgtcgaatgatttgcatagccaatttcgaacacttttgagtcaaaaacgcacacaatcgtaactaaccccaactattcgcaacagtacgttatcaatacgttaacaggtcgtgatgtacacgtaaaagctaagataaatcgtaatttccgtaaagtactcgtaataatccctaaaaagctcgtaaaatgtcgtaaattcgctcgcatttatccgtgttcactcggaacaaatcgtaaatgtttgccgcaaatacttcgcaataaccgtatgaaccataaatggcccgtaaatactcttgaatcgttcttaaataactcttaaaagtgtctgaatcgtagcaatccgtgtagttttacggatttgtagaatacgtaaggatccgtaagaaaaatccg
gi|10 : atacccccttcacactcacaaatccttacggatctccgact--ATT-CAT-AAGAGCAGTGTT--T------ACGTG-TTCTTGC-GA-C--CA-GTTT-A-CGA-TA------------GT-TA---C-----AGAT--TGT----T-ACGAG-T--GATTTACGaatcagataccgtgccatgtaaagcgtaaattctgagcccaaccgtgaattttttgacatgtcaattttttttttatgattgtccacggatttcgttttccgtaaatcactcgtaacaatctgtaactatcgtaaactggtcgcaagaacacgtaaacactgctcttatgaatccgtaaaacactcgtaaaaagtg
gi|15 : atacccccttcacactcacaaatccttacggatctccgactcgtagtcaatcgcaagtattcgtaaatcactcgtcggtatccgtaactcatcacagatcgcacacactcgtacattttttttactgtttcaatcagataccgtgccatgtaaagcgtaaattctgagcccaaccgtgaattttttgacatgtcaattttttttttatgattgtccacggatttcgttttcTTGC-GA-C--CA-GTTT-A-CGA-TAGTTACGGTTT--GT-TA---C-----GAATGAT-T----T-ACGGG-T--Tccgtaaaacactcgtaaaaagtg
gi|5 : cccccttcacattcacggatttttctaacgagtccttacggatctccgactcgtagacannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaacatttttatgattgtcgaatttT-TA---C------GACATT-T----T-ACGAG-C--TTTTTAGGGATTA-T--T--ACGAG---T--AC--TTTA--C---------G-G-AAA-------TT--AC-----GAT-TTg
gi|1 : ttgtccacggatttccttttccgtaaataatccgtaaatcacttgtaacaatccgtaactatcgtaaactggtcgtaagaacacgtaaactgctcttaagaatccgtaaaacactcgtaaaaatgtttttaaacgaatctttgcggttagtttacgatatgttacagaaaatttacgagttgttgacgtattatattacgaacgcctaagtgatagatctatttacgatttcatttgcgtcggattacaatcgttttacggattgttcagagtcattaagaacacttacgtatagacacgattactttacgagtatttttgggctagtaaaaggagcagttgtagaaattgctgatacaattttaatctgttccatgcaatgtcagttgtcgaatgatttgcatagccaatttcgaacacttttgagtcaaaaacgcacacaatcgtaactaaccccaactattcgcaacagtacgttatcaatacgttaacaggtcgtgatgtacacgtaaaagctaagatAT-G----T-ACGGG-C--CATTTACGGTTTA-T--T--ACGAG---T--TC--TC-A--CG--------GTG-ATA-------CT--AC-----GAT-attcgctcgcatttatccgtgttcactcggaacaaatcgtaaatgtttgccgcaaatacttcgcaataaccgtatgaaccataaatggcccgtaaatactcttgaatcgttcttaaataactcttaaaagtgtctgaatcgtagcaatccgtgtagttttacggatttgtagaatacgtaaggatccgtaagaaaaatccg
gi|11 : tttttcttacgtagtccttacggaatctcagagactcgtagtcaatcgcaaacagtacgctattttcgtaaatcagctggtcgtcggatagaatcgttaagtagtcctcttcagtgcatgtctcggcacacagctgcgttcaggacagtgctctgtgaaaggttgggagacatcctgatatctatatttaaatagagcatgtcaaccaacttaatggtttttacgaagctctgtccacggatttcgtgtcccatcccgttaaattaccccgatttaaacctcaacgtaaccgtaactatcgtaaaactttggtcgcaaaatcatcgggtataaacctgtaacgaaaatccgtataaacacttcgtaaaacgcgaaatctttgctggtcttagttttacgatattaatatacggataactcccttacgaggttgtttacggacaatacgaaaactgctgctataaaatataagtgataatccttccaccctcgggtgttcacctatttttcgtataaaatcgctttacggataactgtaacagagttatttaagatgccacttttaactctatagacacgattacatttcccggcaatagtgaaaagagaacgcagttagtaacaatgaaacttatccacaagattttaatctgtgaggccgatggtaaatgtggttcttagtttgtcgaatgacatttactgccgtatagccaattcggacactgttgtagttaaaaaaataatacttaacacccatttcgaaataactaactccggtgaaactacatttaataacagtaacaccaagaaaacacgtttaactatcaacactgcaacaggtacgtgatgtacaacgtagaaagcatagatattaatacagggtatgagtgcgtaaactccattttccgtggtaaagtactccaataattctcctaagatgaacccgtaaaattgttctaaaatatggattaaggttgctcataatattgtagtcgtgttcactacttcaacaaacaaatcgtggagaaattgtttagtgctccgcacccaatacatcgcaagaaccttacCGAG-T--TGTTTACATACTA-T--T--ACGAA---C--GC--CT-A--A---------GTG-ATA-------TTT-AC-----GAT-TTCATTTGCG--T--CGGA---T----T-ACAATCGCTTTAC-GGA-T---TGTT---C-AGAGTCATT-AAGA-GC-ACTTTA----C----------G---TATATACACGATTACTTTACGA-GTATTTT-GGGC--TAGTGAAAGGAG----CAGTT-GT---A-----GAAATTGCTGATAAA----ATTTT-AATATGTACCTGTC-----------T-GTTCTA-AGT-AA---TG----TCA-GTT-G-TCGA-A-TGA---TTA-T-------GC---AT-------AGCCAATTTCGAACACTTTTG-AATCAAA-----AG-------C---GCACAC-------AAT-C------------G---TAACTAAC-C-CC-----AAC--TC---TTCGTAACAGC--------------ACGTT-----ATC-AACA--CGT-TAAgctcataaatcactaagtaggtctttaaagtgtctgaattgtaactacccgtgtacttttacggatttgtagaatactttaggatccgtaagaaa
gi|5 : TTTA--CGA-G---TGTTTTAC-GGATTC-TT-AAGA-GC-AGTTTA----CGTG-TT---CT---T------ACGACCAGTTTACGA-
gi|3 : ttgtccacggatttccttttccgtaaataatccgtaaatcacttgtaacaatccgtaactaTTTA--AGAGC---TATT---T-AGAGTGATTTAAGA-GT-AGTTTACGGCCATGTTA---CGGTTTAT---TACGATT--CTTGCGATGTATTTaatgtttttaaacgaatctttgcggttagtttacgatatgttacagaaaatttacgagttgttgacgtattatattacgaacgcctaagtgatagatctatttacgatttcatttgcgtcggattacaatcgttttacggattgttcagagtcattaagaacacttacgtatagacacgattactttacgagtatttttgggctagtaaaaggagcagttgtagaaattgctgatacaattttaatctgttccatgcaatgtcagttgtcgaatgatttgcatagccaatttcgaacacttttgagtcaaaaacgcacacaatcgtaactaaccccaactattcgcaacagtacgttatcaatacgttaacaggtcgtgatgtacacgtaaaagctaagataaatcgtaatttccgtaaagtactcgtaataatccctaaaaagctcgtaaaatgtcgtaaattcgctcgcatttatccgtgttcactcggaacaaatcgtaaatgtttgccgcaaatacttcgcaataaccgtatgaaccataaatggcccgtaaatactcttgaatcgttcttaaataactcttaaaagtgtctgaatcgtagcaatccgtgtagttttacggatttgtagaatacgtaaggatccgtaagaaaaatccg
gi|13 : ccccccttcacatcacggatttttctaacgagtccttaacggatctccgactccgtaggacatccgcaaagcaattcgtgcaaatactctcggaatccgttagacaactcgcacagctcgccaactcgaaggaatgtcaaaaaacaatttttagaattgtcgaatttaaacgcccggtaaagtgtcatgtcgtaacaagccgtaactaaaccgtaaaactgtcgacaaagagacacgtacagccgtactcctaagaaatccgtagaacactcgtaaaaaattattttaaacgaattctttgcggtagtttacgatatgttacagataatttacgcaccgtgtttacgtattattacgaacggcctaagtgcatatttacgatttcatttgcggtccggattaacaatcgctttggcggattgttcaagagtcattaaagacaactttacgtaagacacgatactgttcgagtattgtgggctgtgaaagggcagttgtagaatgctgatacaattttaaatctgtaccattctggttccatagtaatgttcagttgtcgaatgatatgcatagccattcgacactttgagtgaaaaacgcacacacgtaactaactccactaattccgtaacagcacgcgtaatcaaacacgtttacaggtcatgatgtacaacgtaaaacagctaaggtaatcgcaacttatcgcgtaaataccgtaataatccctaaagcgcgtaaaatgttcgtaaatggctcatatgtatccgtttcactcggacaacatcgtaaatgtgtgcgc---TATAGACACGATTACTT-ACGA-GTACACTGTGGC--TAGTAAAAGGAG----CAGTT-AT---AAAAG-GAAAT-GCTGATACA----ATTTT-AACCTGTACCTCTCATATGCCACGGT-GCTCTA-AGT-AA---TG----CCA-GTT-G-TCGA-A-TTA---TTA-T-------AC---AT-------AGCCAATTTCAAATACTTTTG-AGT-ATA-----AA-------C---ATATAT-------AAT-C------------G---TAACTAACTC-CC-----GAA--TA---TTCGTAACAG-------------------------------CA--CG--TAAC--------AGCT-CGTAATTTAC-ACGTA-AA--AGT--------TAG-----GATA--AAT-CGT---A------Aagtgttctgaatcgtagtaaccggtgtacttttacggatttattagaatacgtgaaggataacgtaagaaaaatccgcagtgtga
gi|7 : gcttttaa---TATAGACACGATTACTT-ACGA-GTACACTGTGGC--TAGTAAAAGGAG----CAGTT-TTGAAA-----GAAAATGCTGATACA----ATTTT-AACCCGTACC------------------TCTCA---T-A----TG----CCATGGT-GCTCTA-AGTAA---T--------------------------GCCAGTTTCAAATACTTTTG-AGT-AAA-----AA-------C---ATACAGTGTATAAAAT-C------------G---TAACTAAGTC-CC-----AAA--TA---TTCGTAACA----------------------------C-AACG------TAAC--------AGCT-CGTAATTTAC-ACGTA-AA--AGC--------TAA-----GCTA--AAT-CGT---A------ACTT-TA-----GTAATATACTCGTAA-C----------AAT--CCCTAAA--------A--AG-CT--CGTAAAA-T-G---TAATTA-A-------------TT-G-GT-C---ATA-TTCTTTA-----A-A----GTGT---------C----T---------AA-ATCGT----AA----tnnnnnnnnnnnnnnnnnnnnnnnnncct
gi|16 : agacgcttttaaTACCATGC-----------T-GTTCCA-AGT-AA---TG----CCA-GTT-G-TCAA-A-TGA---TTA-T-------AC---ATTGTACATGGCCAATTTCGAACACTTTTG-AGTCAAA-----AA-------T---GTAAAC-------TAT-CGTGCATGTACATG---TAACTAACTC-CC-----GAC--TA---TTCTTAACAGT--------------ACGTT-----AT---ACA--TGTATAACCATGTAAAAGAT-CGTGATTTAC-GCTTA-AA--Ataatccgtgtacttttactggtttgtggaataaataagaatacgtaagaaatatataggaatgtgaa
gi|18 : aTTCATAGTTAA---TG-----CATGTT-G-TCAAGA-TGA---TTA-TTCATTTGAC---AT-------GGCCAATTTCGA-CACTTTTG-AGTCAAATGATTAACTAT---C---GTGCAT-------GTC-T------------G---TAACTAATTC-CC-----GACTTTA---TTT-TAAC-T---------------ACGTT-----
gi|10 : gcg-C------------G---TAAATCACTC-GT-----AAC--AA---TCTGTAAC---------------------T-----ATC--------GT-AAAC--------TGGT-CGCAA-GAAC-ACGTA-AA--CAC--------T--------GC-----T-CTTATGA------A----TC-C---GTAAAACACTCGTAA-A----------AAcatgtttaccttgttatata
gi|8 : atacccccttcacactcacaaatccttacggatctccgactcgtagtcaatcgcaagtattcgtaaatcactcgtcggtatccgtaactcatcacagatcgcacacactcgtacattttttttactgtttcaatcagataccgtgccatgtaaagcgtaaattctgagcccaaccgtgaattttttgacatgtcaattttttttttatgattgtccacggatttcgttttcTAACCCGTA-----AAT--CA---CTCGTAACAAT--------------CCG---------C-AACAATCGT-AAAC--------TGGT-CGCAA-GAAC-ACGTA-AA--gtg
gi|26 : tacccccttcacactctcggatttttcttgcgagtccttacggatctccgactcgtagtcannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnna---------------ACGTT-----ATC-AACA--CGT-TAAC--------AGGT-CGGTATGTAC-ACGTA-AA--AGC--------TAA-----GGTA--AAT-CGT---A------ctgctcctaagaatccgtaaaacacttcaaaaatgttttttaacgaatctacgatatgttacagataatttacgagttgtttacgtattaatggacattttcggctgggtgaacatttaca
gi|14 : gc--AGC--------TAT-----GCTA--AGT-CGT---A------ACTT----A---GTAATGTACTCGTAA-C----------AAT--CCCTATA--------A--AG-CT--CGTAAAC-T-G---TCGTAA-A-------------TT-G-CT-C---GTA-TT---TAT----T-C----GTTTTC------AC----TCG--AAAG-AA-ATCGT----AA----A-T--G---TTCG-----CCGTA---AAT-GCATTGCA---AGA------AC----TC-----------------G-TA----------ATA-A---A-TCGTAA-ATGG--TC-TGTA-AA---T-ACT----C--------CGT-TCTTAA-A-TAACTTTTTA--AAGTG-TCTAAATCGTAAC-AATC---CA---TGT----AC-----TT-T-TACGGA---------------T-AAG---GAT-TCGTAAAA--AAA--AA-A-ATC-CG-TGA
gi|6 : C--------CAA-----AGTA--A-T-CGT---G------TCTA-TG-C---GTAAAGTGCTCTTAA-TGACTCTGTACAAT--CCGTAAAGCGATTGTA--AT-CCGACGC-AAA-T-GAAACCGTAA-A--------------T-A-TCAC---TTA-AT---TAGGCGTT-C----GTAATG------AT----CCGT-AAAC-AA-CCCGT----AA----ATT--A---T--------CCGT----AAT-ATATCGTA---Aa
gi|11 : tcccttcacacttaatgagatttttccttacgagtccttacggatctccgactcgtagtcaatcgcaagcattcgtaaaccacccgtcgatannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntttccgtaaattacccgtaaatcactcgttagtaactatcgtaaacatggtccgcaaagaacactagagactgtttctagaatccgtacaaacactcgtaaaaagcgaatctttgcggttagt--------TAA-----AGTA--A-T-CGT---G------TATA-TA-C---GTAAAGTGCTCTTAA-T----------GA---CTCTGAAC-------A--AT-C---CGTAAAG-C-GA--TTGTAA-gctagtgaaaggagcagttttagtaattgctgatacaattttaatctgtaccattaatgtcagttgtcgaatgattatgtatagccaatttcggacacttttgagtaaaaaatgtacacaatcgtaactaactcccaactattcgtaacagc
gi|10 : cgagttgtttacatactattacgaacgcctaagtgatatttacgatttcatttgcgtcggaT-CGT------------TT-TC-C---GTAAATCACTCGTAA-C----------AAT--CTGT--A--------A--CT-AT--CGTAAAC-TGG---TCGCAA-cgagtattttgggctagtgaaaggagcagttgtagaaattgctgataaaattttaatatgtacctgtctgttctaagtaatgtcagttgtcgaatgattatgcatagccaatttcgaacacttttgaatcaaaagcgcacacaatcgtaactaaccccaactcttcgtaacagcacgttatcaacacgttaa
gi|8 : atacccccttcacactcacaaatccttacggatctccgactcgtagtcaatcgcaagtattcgtaaatcactcgtcggtatccgtaactcatcacagatcgcacacactcgtacattttttttactgtttcaatcagataccgtgccatgtaaagcgtaaattctgagcccaaccgtgaattttttgacatgtcaattttttttttatgattgtccacggattT---A------AC----C-C---GTAAATCACTCGTAA-C----------AAT--CCGCAAC--------A--A---T--CGTAAAC-TGG---TCGCAA-gaacacgtaaacactgctcttatgaatccgtaaaacactcgtaaaaagtg
gi|9 : tacccccttcacactctcggatttttcttgcgagtccttacggatctccgactcgtagtcannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaGTA-TCGTAA-C----------AAT--CCCTTTA--------A--GC-TT--CGTAAAC-T-G---TCGTAA---------------TT-GCTT-C---GTA-TT---TAT----T-C----GT-TTC------ACG---TCG--AAGA-AA-TTCGT----AA------T--G----TCG-----CCGT----AAT-GCATTGC----AGA------AT----TC-----------------GTTA----------ATA-ATTTT-GCGTAA-ATGGGTTC-TGTATAA---T-ACCGTGGCT-TAAAT-AAA-TCT----------TTTTAAC-AGGT--TCT-AATCGTAACAAATC---CA---TATAATAAC-----TTAT-TACG-----G-TAG--AT-CGT-AA------------------AAA--AA-A-AAC-C--TGAATGTGAgaacacgtaaactgctcctaagaatccgtaaaacacttcaaaaatgttttttaacgaatctacgatatgttacagataatttacgagttgtttacgtattaatggacattttcggctgggtgaacatttaca
gi|7 : ataattacccactcctttatttattttgtagtcagcagaataaaaaaaatttcaggaaggcatcattattgagcgtaggtaaactatgctaatgtcgtcttgttactTCGTAACT----------AAG--TCCCAAA--------T--AT--T--CGTAACA-C-A---ACGTAACA----------------G-CT-C---GTAATT---TA-------C----ACGTAA------AA----GCT--AAGCTAA-ATCGT----AA----CTTTAG---T----------------AAT-ATA------------------C----TC-----------------G-TA----------ACA-A---T-CCCTAA-AAAG--CT-CGTA-AAATGT-AAT----T----AAT-TGG-TC-----A-TA-TTCTTTA--AAGTG-TCTAAATCGTAAT-AATC---CG---TGT----AC-----TT-T-TACTGGTTTG-TGG-AATAAAT-AAG---AAT-ACGT------AAG--AA-ATATA-TA-GGAATGTGAatgg
gi|5 : agacgcttttaatatagacacgattacttacgagtacactgtggctagtaaaaggagcagttttgaaagaaaatgctgatacaattttaacccgtacctctcatatgccatggtgctctaagtaatgccagtttcaaatacttttgagtaaaaacatacagtgtataaaaCCCAAA--------A--ATACT--CGTAAA----------GTAA---------------------T-C---GTG-TC---TA-----TACGTAAGTGTTCTTAATGAC----TCT--GAAC-AA-TCCGT----AAAACGATT--GTAATCCG-----ACGCA---AATGAAATCGTAAATAGATCTATCAC----TTAGGCGTTC---------G-TA----------ATATA---ATACGTCA-ACAA--CT-CGTA-AA---T-TTT----CTGTAA---CATATCGTAA-ACTAAC-CGCAAAGATTCG-TTTAAA----AAC-ATTTTTACG---AGT----G------TT-T-TACGGATTa
gi|17 : ttgtccacggatttccttttccgtaaataatccgtaaatcacttgtaacaatccgtaactatcgtaaactggtcgtaagaacacgtaaactgctcttaagA---AAT-GCTTTGCA---AGA------ATCAAGTA-----------------G-CA----------ATA-A---A-CCTTAA-ATGG--CCTCATA-T----T-GCT----CG-TAAATACAC-T---AA-A-CATTATTTAA--A-GTG-TCTAAATCGTAAC-AATC---CGA--TGT----AC-----GT-A-TACTGATTTG-AAGTAATGCGT-AAA---GAT-TCGTCAGAAAAAGA-AA-A-ATC-C--TGAGTGTctagtaaaaggagcagttgtagaaattgctgatacaattttaatctgttccatgcaatgtcagttgtcgaatgatttgcatagccaatttcgaacacttttgagtcaaaaacgcacacaatcgtaactaaccccaactattcgcaacagtacgttatcaatacgttaacaggtcgtgatgtacacgtaaaagctaagataaatcgtaatttccgtaaagtactcgtaataatccctaaaaagctcgtaaaatgtcgtaaattcgctcgcatttatccgtgttcactcggaacaaatcgtaaatgtttgccgcaaatacttcgcaataaccgtatgaaccataaatggcccgtaaatactcttgaatcgttcttaaataactcttaaaagtgtctgaatcgtagcaatccgtgtagttttacggatttgtagaatacgtaaggatccgtaagaaaaatccg
gi|6 : atgctaaccttA-ATGA--TC-CGTA-AA---CAACC----CG-TAAAT-TAT-CCGTAATA-TA--TCGTAA--A------CT-AACCGCAAA-GATT---CGCTTTTT----ACGAGTGTT-TGTACGGATTC--TAG-AA
gi|23 : tcccttcacacttaatgagatttttccttacgagtccttacggatctccgactcgtagtcaatcgcaagcattcgtaaaccacccgtcgatannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntttccgtaaattacccgtaaatcactcgttagtaactatcgtaaacatggtccgcaaagaacactagagactgt-TAGTTCTTAA--AAGTG-TGTAAATCGTAAC-AATT---CG---TGT----AC-----TT-T-TACGGATTTG-TGG-AATACGT-AAG---GAT-CCGT------AAAC-AA-A-ATC-CG-acgaacgcctaattaagtgatatttacggtttcatttgcgtcggattacaatcgctttacggattgtacagagtcattaagagcactttacgcatagacacgattactttgggctagtgaaaggagcagttttagtaattgctgatacaattttaatctgtaccattaatgtcagttgtcgaatgattatgtatagccaatttcggacacttttgagtaaaaaatgtacacaatcgtaactaactcccaactattcgtaacagc
gi|22 : TCTTTA--GAGTG-TCTAAATCGTAAC-AATC---CG---TGT----AC-----TT-T-TACTGGTTTG-TGG-AATACAT-AAG---AAT-ACGT------AAG--AA-A-A
gi|15 : T-C-TACG-AGTCG-GAG-A-TCCGT-AAG---GAC-TCGT------TAG--AAAA-ATC-CG-TGAATGTGAatatgggaatg
gi|3 : ccccct-TACGGAGTCG-GAG-A-TCCGTTAAG---GAC-TCGT------TAG--AAAA-ATC-CG-TGA-TGTGAcannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaacatttttatgattgtcgaatttaacccgtaaatcattcgtaacaaaccgtaactatcgtaaactggtcgcaag
gi|4 : cccccctGAGTTG-GAG-A-TCCGT-AAG---GAC-TCAT------AAGA-AA-A-ATC-TG-TGAGTGTGAggacatccgcaaagcaattcgtgcaaatactctcggaatccgttagacaactcgcacagctcgccaactcgaaggaatgtcaaaaaacaatttttagaattgtcgaatttaaacgcccggtaaagtgtcatgtcgtaacaagccgtaactaaaccgtaaaactgtcgacaaagagacacgtacagccgtactcctaagaaatccgtagaacactcgtaaaaaattattttaaacgaattctttgcggtagtttacgatatgttacagataatttacgcaccgtgtttacgtattattacgaacggcctaagtgcatatttacgatttcatttgcggtccggattaacaatcgctttggcggattgttcaagagtcattaaagacaactttacgtaagacacgatactgttcgagtattgtgggctgtgaaagggcagttgtagaatgctgatacaattttaaatctgtaccattctggttccatagtaatgttcagttgtcgaatgatatgcatagccattcgacactttgagtgaaaaacgcacacacgtaactaactccactaattccgtaacagcacgcgtaatcaaacacgtttacaggtcatgatgtacaacgtaaaacagctaaggtaatcgcaacttatcgcgtaaataccgtaataatccctaaagcgcgtaaaatgttcgtaaatggctcatatgtatccgtttcactcggacaacatcgtaaatgtgtgcgcaaatacatcgcaagaatcgtaataaaccgtaacatggccgtaaactactcttaaatcactctaaatagctcttaaaagtgttctgaatcgtagtaaccggtgtacttttacggatttattagaatacgtgaaggataacgtaagaaaaatccgcagtgtga
gi|19 : accccctGAGTCG-GAA-AATCCGA-AAT---GAC-TCGT------AAG--AA-A-ATC-CG-TGTGTATGAatagtcaatcgcaggcatttgtaaatcactcgtcggtatccattaataactcgtcacaactcgcacacactcgtaaggatccatgaaagttgggctaaatttcttgacatgtcaaaaaaaaattatgattgtccacaaattttattttccgtaaatcactcgtaactatcataaactggttgcaagaacacgtaaactgctcttaagaattcgtaaaacactcgtaaaaaaaattttttaacgaatctttgcagttagtttacgatttgttagagatagttttcgagttgtttacagatcattgcgaatgcctaagtgatatttacgatctctttcacatcgggttacgatcgctttacagattgttcagagttattaagagcacttcaagtatagacatgattactttacgagtacatttgggctagtgaaaggagcagttttagaaattgctgatacaattttaatctgtaccatgctgttccaagtaatgtcagttgttgaatgattatacatagccaatttcgaacacttttgagtcaaaaacgtaaacaatcgtaattaactcccaactattcataacagcatgttatcaacatgttaacatgttgtgatgtacacgtaaaaactaaggtaaattgtaactttccgtaaagtactcgtaataatccctaaaagctcgtaaaatgtcataaattgttcataattatccgtgttcactcggaacaaatcgtaaatgtttaccgcaaatacatcgcaagaactcatagtaaatactcttaaatcattcttaaatagctctttaaagtggctgaatcgtaacaatctgtgtacttttacggattcatagaatccgtaagaaaaatctgtgag
gi|6 : accacctATCCGT-AAG---GAC-TCGT------AAGGAAA-A-ATCTCATTAAGTGTGAgaagtcaaatcaagccggtaaatatctcgtcgactagtgttttatactttcatttgccacgactcgcagcaccactcgtaag
gi|8 : tccctATCCGT-AAG---GAC-TCGC------AAGA-AA-A-ATC-CG-AGAGTGTGActccgactcgtagtcaatcgcaagcattcgtaaaccacccgtcgatannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntttccgtaaattacccgtaaatcactcgttagtaactatcgtaaacatggtccgcaaagaacactagagactgtttctagaatccgtacaaacactcgtaaaaagcgaatctttgcggttagtttacgatatattacggataatttacgggttgtttacggatcattacgaacgcctaattaagtgatatttacggtttcatttgcgtcggattacaatcgctttacggattgtacagagtcattaagagcactttacgcatagacacgattactttgggctagtgaaaggagcagttttagtaattgctgatacaattttaatctgtaccattaatgtcagttgtcgaatgattatgtatagccaatttcggacacttttgagtaaaaaatgtacacaatcgtaactaactcccaactattcgtaacagc
gi|25 : taccccctT-AAC---GAC-TCTT------AAG--AA-A-ATT-CT-TGAGTGTGActccgactcgtagtcannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnataacccgtaaatcactcgtaacaatccgcaacaatcgtaaactggtcgcaagaacacgtaaactgctcctaagaatccgtaaaacacttcaaaaatgttttttaacgaatctacgatatgttacagataatttacgagttgtttacgtattaatggacattttcggctgggtgaacatttaca
2 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|20 ): GATTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
Unaligned ( gi|24 ): AATTTCCATGACTTCCGAGCTTTGTCGAAAAAATAAAAATCGGATTAGTTCTACAGCAATGAAATGCTAAAACTACAA
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 1111111111111 111 11111111 11111111 11111 44444444444 11111 11111 1 333333333333 11 22222 3333333333333333333333333 1111 1111111 1111111 2222222222222222222222222222222 111 111111111111111 11111111 11111111 11111 111111 11111111 2222222222222 11111 1111 111 1111 222222222 11111 4444444444444444444444444444444444444444 111 333333333333333 1
lowQualScore : 4 4 2 3 3 3 7 55 3 88888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 777 4 3 55 88888888 55 55 666 3 2 3 3 7 4 4 55 8888 4 55 2 55 0 55 55 55 3 7 4 5555555555555 4 77 4 333 4 4 4 66 4 4 9999 4 55 4 4 4 88888 44444444 66666666 00000 5 00000000000 22222 5 22222 66 5 66 5 888 88 5 5 5 1 888888888888 66 11 0 66 9999 44 777 00000 7 66 66 4 1111111111111111111111111 666 1111 7 3 3 3 3 666 3 1111111 666 1111111 3 5 99999 7777 3 7777777777777777777777777777777 666 7777 55 111 999999999999999 55 99999 4 0 4 66666666 4 8 4 55 66666666 11111 66 4 222222 77777777 66 00 66 1 5 5 0 7777777777777 5 5 888 888 5 77777 5 5 5555 111 5 0000 777777777 22222 0 777 0 0000000000000000000000000000000000000000 9999 5 000 5 5 5 6 5 55 2 0 777 4 4 3 4 4 8888 4 6 4 4 1 4 000000000000000 6 4
lowQualScore : . . . . . . . .. . ................................................................................................................................ ... . . .. ........ .. .. ... . . . . . . . .. .... . .. . .. . .. .. .. . . . ............. . .. . ... . . . .. . . .... . .. . . . ..... ........ ........ ..... . ........... ..... . ..... .. . .. . ... .. . . . . ............ .. .. . .. .... .. ... ..... . .. .. . ......................... ... .... . . . . . ... . ....... ... ....... . . ..... .... . ............................... ... .... .. ... ............... .. ..... . . . ........ . . . .. ........ ..... .. . ...... ........ .. .. .. . . . . ............. . . ... ... . ..... . . .... ... . .... ......... ..... . ... . ........................................ .... . ... . . . . . .. . . ... . . . . . .... . . . . . . ............... . .
lowQualScore : 0 0 1 6 6 6 3 00 6 00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 000 0 6 00 33333333 00 00 444 6 3 6 6 3 0 0 55 5555 0 55 3 55 3 55 55 00 6 3 0 5555555555555 4 99 4 333 4 4 4 11 4 4 4444 0 55 0 9 1 77777 33333333 11111111 44444 0 88888888888 55555 0 55555 99 0 99 0 888 66 0 0 7 4 333333333333 66 66 7 11 4444 66 888 66666 4 11 11 4 4444444444444444444444444 444 4444 3 6 6 6 6 444 6 8888888 444 8888888 6 1 11111 7777 6 2222222222222222222222222222222 444 7777 00 444 888888888888888 00 11111 0 7 0 11111111 4 9 4 55 11111111 11111 11 4 888888 33333333 99 99 99 0 0 0 4 5555555555555 0 0 888 888 0 44444 6 0 6666 000 0 6666 666666666 55555 2 888 9 9999999999999999999999999999999999999999 0000 0 222 0 0 0 4 0 99 0 9 000 0 0 4 0 0 5555 0 2 0 0 0 0 555555555555555 0 5
consensus : CCCCCTTCACACTCA-CG-GATTTTTC-TTACG-AGTCCTT-ACGGA-TCTCCGA--CT-CGTAGTCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTTCCGTAAA---TCAC-TCG-TAA--CAATCC---GTAACTA--TCGTA--AA---C-TGGTC-G-CAA-GA-ACA-C--G----TA-A--ACTG--CTCTT--A--AGAAT-CCG-TA-AAACACT-CGTAAAAAA--CGTTTTT--AAAC-GAA-TCTTTGC-GGTT--AGTTT-A-CGA-TAT--GT-TACGGATAATT----TACG-A--G-TTGTTTACGNATTAT--T--ACGAA------C-GCC--------TAA----GTG-ATA-------TTT-AC-----GAT-TTCA-----TTCGCG--TCGGATT-A--CAATCGCTTT-ACGGAT---TGTT-C-AGAGTCATT-AAGA-GC-ACTTT--AC--GTA-GTATAGACACGATTACTTTACGAGTACTTTTGGGC--TAGTGAAAGGAG----CAGTT-GT---A-----GAAATTGCTGAT--ACAA--TTTT-AATCTGTACCATTC-----------T-GTTCCA-AGTAA---TG----TCA-GTT-G-TCGA-A-TGA---TTA-T-------GC---AT-------AGCCAATTTCGAACACTTTTG-AGTCAAA-----AA----CGTA-CAC-------AA--------TC------------G---TAACTAACTCCC----GAC--TA---TTCGTAACAG--------------CA--CGTT-----ATC-AACACGT-TAAC--------AGGT-CGTGATGTAC-ACGTA-AA--AGC--------TAA-----GGTA--AAT-CGTA------ACTT-TC-C---GTAAAGTACTCGTAATAAT--CCCTAAAA--AGCTCGTAAAA-TG-TCGTAAA-------------TT-GC-TC---GTA---TT-TA-T-C-GTGT-TCAC----TCG--AAACAA-ATCGT----AAATT-------GTT-----CGCCGCA---AATACATCGCAAGAAC------TC-----G-TA---------------------ATAAAC---CGTAA-ATGG--CC-CGTA-AA-TACTCTTAAAT-CGT-TCTTAAATAGCTC---TTNAAAGTG-TCTGAATCGTAAC-AATCCG-TGT----ACTT-TTACGGATTTG-TAG-AATACGT-AAGGATC--CGT------AAG-AAAATCCGTGAGTGTGA
Reference ( family-971 ) : CCCCCTTCACACTCA-CG-GATTTTTC-TTACG-AGTCCTT-ACGGA-TCTCCGA--CT-CGTAGTCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTCCGTAAA---TCAC-TCG-TAA--CAATCC---GTAACTA--TCGTA--AA---C-TNGTC-G-CAA-GA-ACA-C--G----TA-A--ACTG--CTCTT--A--AGAAN-CCG-TA-AAACACT-CGTAAAAAA--TGTTTTT--AAAC-GAG-TCTTTGC-GGTC--AGTTT-A-CGA-TAT--GT-TACGGATAATT----TACG-A--G-TNGTTTACGGATTAT--T--ACGAA------C-GCC--------TAN----GTG-ATA-------TT--AC-----GAT-TTCA-----TTTGCG--TCGGATT-A--CAATCGCTTT-ACGGAT---TGTT-C-AGAGTCATT-AAGA-GC-ACTTT--AC--GTACGTATAGACACGATTACTTTACGAGTACTTTTGGGC--TAGTGAAAGGAG----CAGTT-GT---A-----GAAATTGCTGAT--ACAA--TTTT-AATCTGTACCATTC-----------T-GTTCCA-AGTAA---TG----TCA-GTT-G-TCGA-A-TGA---TTA-T-------GC---AT-------AGCCAATTTCGAACACTTTTG-AGTCAAA-----AA----CGTA-CAC-------AA--------TC------------G---TAACTAACTCCC----AAC--TA---TTCGTAACAG--------------CA--CGTT-----ATC-AACACGT-TAAC--------AGGT-CGTGATGTAC-ACGTA-AA--AGC--------TAA-----GGTA--AAT-CGTA------ACTT-TC-C---GTAAAGTACTCGTAACAAT--CCCTAAAA--ANCTCGTAAAA-TG-TCGTAAA-------------TT-GC-TC---GTA---TT-TA-T-C-GTGT-TCAC----TCG--AAACAA-ATCGT----AAATT-------GTT-----CGCCGCA---AATACATCGCAAGAAC------TC-----G-TA---------------------ATAAAC---CGTAA-ATGG--CC-CGTA-AA-TACTCTTAAAT-CGT-TCTTAAATAGCTC---TTAAAAGTG-TCTAAATCGTAAC-AATCCG-TGT----ACTT-TTACGGATTCG-TAG-AATNCGT-AAGGACT--CGT------AAG-AAAATCCGTGAGTGTGA
gi|1 : TTTTTC-TTACGTAGTCCTT-ACGGAATCTCAGAGACT-CGTAGTCA
gi|1 : CG-TAA--C----C---GTAACTA--TCGTA--AAACTT-TGGTC-G-CAA-AA-TCATC--GGGTATA-A--AC----CTGTA--ACGAAAAT-CCG-TATAAACACTTCGTAAAACG--CG-------AAA------TCTTTGCTGGTCTTAGTTTTA-CGA-TATTAATATACGGATAACTCCCTTACG-A--GGTTGTTTACGGACAAT-----ACGAAAACTGCT-GCTATAAAATATAA----GTG-ATAATCC---TTCCACCCTCGGGTGTTCACCTATTTTTCG--T---AT--A--AAATCGCTTT-ACGGATAACTGTAAC-AGAGTTATTTAAGATGCCACTTTTAAC--TC---TATAGACACGATTAC---------ATTTCCCGGCAATAGTGAAAAGAGAACGCAGTTAGT---AACAATGAAA---CTTATCCACAAGATTTT-AATCTGTG--AGGC-----------C-GAT----GGTAAATGTGGTTCTTA-GTTTG-TCGA-A-TGACATTTACT-------GCCGTAT-------AGCCAATT-CGGACACTGTTGTAGTTAAA-----AA----AATAATACTT-----AACACCCATTTC------------GAAATAACTAACTCCGGTGAAAC--TACATTTAATAACAGTAACACCAAGAAAACA--CGTTTAACTATC-AACACTG-CAAC--------AGGTACGTGATGTACAACGTAGAA--AGCATAGATATTAATACAGGGTATGAGTGCGTAAACTCCATTT-TC-CGTGGTAAAGTACTC-CAATAATTCTCCTAAGATGAACCCGTAAAATTG-TTCTAAAATATGGATTAAGGTT-GC-TCATAATA---TTGTAGT-C-GTGT-TCACTACTTCAACAAACAA-ATCGTGGAGAAATT-------GTTTAGTGCTCCGCACCCAATACATCGCAAGAACCTTACATC-----G-TAGTATCACCGTGAGAACTCGTAATAAAC---CGTAA-ATGG--CC-CGTA-CA-TGCTCATAAAT-CA----CTAAGTAGGTC---TTTAAAGTG-TCTGAATTGTAAC-TACCCG-TGT----ACTT-TTACGGATTTG-TAG-AATACTT-TAGGATC--CGT------AAG-AAAatcgcaaacagtacgctattttcgtaaatcagctggtcgtcggatagaatcgttaagtagtcctcttcagtgcatgtctcggcacacagctgcgttcaggacagtgctctgtgaaaggttgggagacatcctgatatctatatttaaatagagcatgtcaaccaacttaatggtttttacgaagctctgtccacggatttcgtgtcccatcccgttaaattaccccgatttaaacctcaacgtaaccgtaactatcgtaaaactttggtcgcaaaatcatcgggtataaacctgtaacgaaaatccgtataaacacttcgtaaaacgcgaaatctttgctggtcttagttttacgatattaatatacggataactcccttacgaggttgtttacggacaatacgaaaactgctgctataaaatataagtgataatccttccaccctcgggtgttcacctatttttcgtataaaatcgctttacggataactgtaacagagttatttaagatgccacttttaactctatagacacgattacatttcccggcaatagtgaaaagagaacgcagttagtaacaatgaaacttatccacaagattttaatctgtgaggccgatggtaaatgtggttcttagtttgtcgaatgacatttactgccgtatagccaattcggacactgttgtagttaaaaaaataatacttaacacccatttcgaaataactaactccggtgaaactacatttaataacagtaacaccaagaaaacacgtttaactatcaacactgcaacaggtacgtgatgtacaacgtagaaagcatagatattaatacagggtatgagtgcgtaaactccattttccgtggtaaagtactccaataattctcctaagatgaacccgtaaaattgttctaaaatatggattaaggttgctcataatattgtagtcgtgttcactacttcaacaaacaaatcgtggagaaattgtttagtgctccgcacccaatacatcgcaagaaccttacatcgtagtatcaccgtgagaactcgtaataaaccgtaaatggcccgtacatgctcataaatcactaagtaggtctttaaagtgtctgaattgtaactacccgtgtacttttacggatttgtagaatactttaggatccgtaagaaa
gi|10 : tttttcttacgtagtccttacggaatctcagagactcgtagtcaatcgcaaacagtacgctattttcgtaaatcagctggtcgtcggatagaatcgttaagtagtcctcttcagtgcatgtctcggcacacagctgcgttcaggacagtgctctgtgaaaggttgggagacatcctgatatctatatttaaatagagcatgtcaaccaacttaatggtttttacgaagctctgtccacggatttcgtgtcccatcccgttaaattaccccgatttaaacctcaaCCCCCTTCACACTCA-CA-AAT---------------CCTT-ACGGA-TCTCCGA--CT-CGTAGTCA
gi|10 : ata-TG-AAACA----GTAAAAAAAATGT--------AC-GAG-TGTGTGC-GATC--TGT------GA-TGA--GT-TACGGAT-ACC----GACG-A--G-TGATTTACGAATACT--T--GCGAT------T-GAC--------TAC----Gatcgcaagtattcgtaaatcactcgtcggtatccgtaactcatcacagatcgcacacactcgtacattttttttactgtttcaatcagataccgtgccatgtaaagcgtaaattctgagcccaaccgtgaattttttgacatgtcaattttttttttatgattgtccacggatttcgttttccgtaaatcactcgtaacaatctgtaactatcgtaaactggtcgcaagaacacgtaaacactgctcttatgaatccgtaaaacactcgtaaaaagtg
gi|10 : atacccccttcacactcacaaatccttacggatctccgactTTTTCCGTAAA---TCAC-TCG-TAA--CAATCT---GTAACTA--TCGTA--AA---C-TGGTC-G-CAA-GA-ACA-C--G----TA-AACACTG--CTCTT--A--TGAAT-CCG-TA-AAACACT-CGTAAAAAG--TGatcagataccgtgccatgtaaagcgtaaattctgagcccaaccgtgaattttttgacatgtcaattttttttttatgattgtccacggatttcgttttccgtaaatcactcgtaacaatctgtaactatcgtaaactggtcgcaagaacacgtaaacactgctcttatgaatccgtaaaacactcgtaaaaagtg
gi|11 : atacccccttcacactcacaaatccttacggatctccgactcgtagtcaatcgcaagtattcgtaaatcactcgtcggtatccgtaactcatcacagatcgcacacactcgtacattttttttactgtttcaatcagataccgtgccatgtaaagcgtaaattctgagcccaaccgtgaattttttgacatgtcaattttttttttatgattgtccacggatttcgCG-A--G-TTGTTTACATACTAT--T--ACGAA------C-GCC--------TAA----GTG-ATA-------TTT-AC-----GAT-TTCA-----TTTGCG--TCGGATT-A--CAATCGCTTT-ACGGAT---TGTT-C-AGAGTCATT-AAGA-GC-ACTTT--AC--GTA--TATA--CACGATTACTTTACGAGTA-TTTTGGGC--TAGTGAAAGGAG----CAGTT-GT---A-----GAAATTGCTGAT--AAAA--TTTT-AATATGTACCTGTC-----------T-GTTCTA-AGTAA---TG----TCA-GTT-G-TCGA-A-TGA---TTA-T-------GC---AT-------AGCCAATTTCGAACACTTTTG-AATCAAA-----AG----CGCA-CAC-------AA--------TC------------G---TAACTAAC-CCC----AAC--TC---TTCGTAACAG--------------CA--CGTT-----ATC-AACACGT-TAA
gi|12 : TTTTCCGTAAA---TAAT-TTACTAA--AAA-CT---TT--CTT--TCAT------------GTC-T-TAA-TA-AC-----G----TA-A--ACTG--CTCGTAAA--AGAAT-CCGTTT-TAACATT-AGT--AAAA--CTTTTTTAAAAACAAAG----TTAC-GGTT--A-CTT-ATCAATTAT--GT-TGC-AATAGTT----TACG-T--G-TTATATACAGATTAT--TTAAC-AA------T-GCG--------TAG----GTG-ATAT------TT--AC-----GAT-TACA------TCAAG--TCGGG-T-AGCCAACAGTCTC-ACGGAT---TGT----ATAGTCACT-AA
gi|13 : cgtaaaggttccggaaagtggtgaacattttttacgatgtcaaaaaatcaacgattgtccaacggattttaTATAGACACGATTACTT-ACGAGTACACTGTGGC--TAGTAAAAGGAG----CAGTT-AT---AAAAG-GAAA-TGCTGAT--ACAA--TTTT-AACCTGTACCTCTCATATGCCACGGT-GCTCTA-AGTAA---TG----CCA-GTT-G-TCGA-A-TTA---TTA-T-------AC---AT-------AGCCAATTTCAAATACTTTTG-AGT-ATA-----AA----CATA-TAT-------AA--------TC------------G---TAACTAACTCCC----GAA--TA---TTCGTAACAG--------------CA--CG-------------------TAAC--------AGCT-CGTAATTTAC-ACGTA-AA--AGT--------TAG-----GATA--AAT-CGTA------A
gi|14 : gcttttaa--AGC--------TAT-----GCTA--AGT-CGTA------ACTT----A---GTAATGTACTCGTAACAAT--CCCTATAA--AGCTCGTAAAC-TG-TCGTAAA-------------TT-GC-TC---GTA---TT-TATT-C-GTTT-TCAC----TCG--AAAGAA-ATCGT----AAA-T-------GTT-----CGCCGTA---AATGCATTGCAAGAAC------TC-----G-TA---------------------ATAAAT---CGTAA-ATGG--TC-TGTA-AA-TACTC-------CGT-TCTTAAATAACTT---TTTAAAGTG-TCTAAATCGTAAC-AATCCA-TGT----ACTT-TTACGGAT----AAG-GATTCGT-AAAA--------------AAA-AAAATCCGTGAtnnnnnnnnnnnnnnnnnnnnnnnnncct
gi|15 : CCCCCTTCACATTCA-CG-GATTTTTC-TAACG-AGTCCTT-ACGGA-TCTCCGA--CT-CGTAGACAa
gi|15 : CCGTAAA---TCAT-TCG-TAA--CAAACC---GTAACTA--TCGTA--AA---C-TGGTC-G-CAA-Gnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaacatttttatgattgtcgaatttaacccgtaaatcattcgtaacaaaccgtaactatcgtaaactggtcgcaag
gi|16 : cccccttcacattcacggatttttctaacgagtccttacggatctccgactcgtagacannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaacatttttatgattgtcgaatttaacTACCATGC-----------T-GTTCCA-AGTAA---TG----CCA-GTT-G-TCAA-A-TGA---TTA-T-------AC---ATTGTACATGGCCAATTTCGAACACTTTTG-AGTCAAA-----AA----TGTA-AAC-------TA--------TCGTGCATGTACATG---TAACTAACTCCC----GAC--TA---TTCTTAACAG--------------TA--CGTT-----AT---ACATGTATAACCATGTAAAAGAT-CGTGATTTAC-GCTTA-AA--A
gi|17 : aA---AATGCTTTGCAAGAA-------TCAAGTAG-CA---------------------ATAAAC---CTTAA-ATGG--CCTCATA-T--TGCTCGTAAATACAC-T---AAACA-TTA---TTTAAAGTG-TCTAAATCGTAAC-AATCCGATGT----ACGT-ATACTGATTTG-AAGTAATGCGT-AAAGATT--CGTCAGAAAAAGAAAAATCC-TGAGTGT
gi|18 : atgctaaccttTAA---TG-----CATGTT-G-TCAAGA-TGA---TTA-TTCATTTGAC---AT-------GGCCAATTTCGA-CACTTTTG-AGTCAAATGATTAACTATCGTG-CAT-------GT--------CT------------G---TAACTAATTCCC----GACTTTA---TTT-TAAC----------------TA--CGTT-----
gi|19 : gcgttcatagtCCACCTTCATACACA-CG-GATTTT-C-TTACG-AGTCATT-TCGGATTTTCCGA--CT-CGAAGTCAcatgtttaccttgttatata
gi|2 : aCCCCCTTCACACTCA-CG-GATTTTTC-TTACG-AGTCCTT-ACGGA-TCTCCGA--CT-CGTAGTCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTTCCGTAAA---TCAC-TCG-TAA--CAATCT---GTAACTA--TCGTA--AA---C-TTGTT-G-CAA-GA-ACA-C--G----TA-A--ACTG--CTCTT--A--AGAAA-CCG-TA-AAACACT-CGTAAAAAA--TGTTTTT--AAAC-GAA-TCTTTGC-GGTT--AGTTT-A-CGA-TAT--GT-TACAGATAATT----TACG-A--G-TTGTTTACGTATTAT--T--ACGAA------C-GCC--------TAT----GTG-ATA-------TT--AC-----GAT-TTCA-----TTTGTG--TCGGATT-A--CAGTCGCTTT-A-GGAT---TGTT-C-AGAGTCATT-AAGA-GC-ACTTT--ACATGTACGTATAGACACGATTACTTTACGAGTATTTTTGGGC--TAGTGAAAGGAG----CAGTT-GT---A-----GAAATTGCTGAT--GCAA--TTTT-AATCTGTACCATTC-----------T-GTTTCA-AGTAA---TG----TCA-GTT-G-TCGA-A-TGA---TTA-T-------GC---AT-------AGCCAATTTCGAACACTTTTG-AGTCAAA-----AA----CGCA-CAC-------AA--------TC------------G---TAACTAACTCTC----AAC--TA---TTCGTAACAG---------------A--CGTT-----ATC-AACACGT-TAAC--------AGGT-CGTGATGTAC-ACGTA-AA--AGC--------TAA-----GGTA--AAT-CGTA------ACTT-TC-C---GTAAAGTACTCGTAATAAT--CCCTAAAA--ATCTCGTAAAA-TG-TCGTAAA-------------TT-GT-TC---GTA---TT-TA-T-C-GTGT-TCAC----TCG--AAACAA-ATCGT----AAATT-------GTT-----TGCCGCA---AATACATCGCAAGAAC------TT-----G-TG---------------------ATAAAA---CGTAA-ATGG--CC-CGTA-AA-TACTCTTAAAT-CAT-TCTTAAATAGCTC---TTAAATGTG-TCTGAATCGTAGC-AATCCG-TGT----ACTT-TTACGGATTTG-TAG-AATACGT-AAGGATC--CGT------AAG-AAAATCCATGAGTGTGAaatcaagccggtaaatatctcgtcgactagtgttttatactttcatttgccacgactcgcagcaccactcgtaag
gi|21 : CCCTCTTCATACTCA-TG-GATTTTTC-GTACT-AGTAATT-ACGGA-TCTCCGA--CT-CGTAGTCA
gi|22 : taTC---TTTAGAGTG-TCTAAATCGTAAC-AATCCG-TGT----ACTT-TTACTGGTTTG-TGG-AATACAT-AAGAATA--CGT------AAG-AAAAatcaaaagcattcgtaaatcactcgtcgg
gi|23 : TAGTTC---TTAAAAGTG-TGTAAATCGTAAC-AATTCG-TGT----ACTT-TTACGGATTTG-TGG-AATACGT-AAGGATC--CGT------AAACAAAATCCGatatgggaatg
gi|25 : TTCACACTCA-AG-AATTTT-C-TTAAG-AGTCGTT-ATTGA-TCTCCGA--TT-CGTAGTCA
gi|26 : accacaG--------------CA--CGTT-----ATC-AACACGT-TAAC--------AGGT-CGGTATGTAC-ACGTA-AA--AGC--------TAA-----GGTA--AAT-CGTA------atttgcaagcatt
gi|3 : CCCCCTTCACA-TCA-CG-GATTTTTC-TAACG-AGTCCTTAACGGA-TCTCCGA--CTCCGTAG
gi|3 : cGTAAAGTGTCATGTCG-TAA--CAAGCC---GTAACTAAACCGTA--AA---A-CTGTC-GACAAAGAGACA-C--G----TACA--GCCGTACTCCT--A--AGAAATCCG-TA-GAACACT-CGTAAAAAA--TTATTTT--AAAC-GAATTCTTTGC-GGT---AGTTT-A-CGA-TAT--GT-TACAGATAATT----TACGCACCG-T-GTTTACGTATTAT--T--ACGAA------CGGCC--------TAA----GTGCATAT------TT--AC-----GAT-TTCA-----TTTGCGGTCCGGATTAA--CAATCGCTTTGGCGGAT---TGTT-CAAGAGTCATT-AAAG-ACAACTTT--AC--GTA-----AGACACGA-TACTGTTCGAGTA-TTGTGGGC--T-GTGAAAGG-G----CAGTT-GT---A-----GAA--TGCTGAT--ACAA--TTTTAAATCTGTACCATTC-----------TGGTTCCATAGTAA---TGT---TCA-GTT-G-TCGA-A-TGA----TA-T-------GC---AT-------AGCCA--TTCG-ACAC-TTTG-AGTGAAA-----AA----CGCA-CAC-------A----------C------------G---TAACTAACTCC------AC--TAAT-TCCGTAACAG--------------CACGCGTA-----ATCAAACACGT-TTAC--------AGGT-CATGATGTACAACGTA-AAACAGC--------TAA-----GGT---AAT-CGCA------ACTTATCGC---GTAAA-TAC-CGTAATAAT--CCCT--AA--AGCGCGTAAAA-TGTTCGTAAA-------------TG-GC-TC---ATA---TG-TA-TCC-GT-T-TCAC----TCG---GACAACATCGT----AAA-T-------GTG-----TG-CGCA---AATACATCGCAAGAA-------TC-----G-TA---------------------ATAAAC---CGTAACATGG---C-CGTA-AACTACTCTTAAAT-CAC-TC-TAAATAGCTC---TTAAAAGTGTTCTGAATCGTAGT-AACCGG-TGT----ACTT-TTACGGATTTATTAG-AATACGTGAAGGA-TAACGT------AAGAAAAATCCGC-AGTGTGAgacatccgcaaagcaattcgtgcaaatactctcggaatccgttagacaactcgcacagctcgccaactcgaaggaatgtcaaaaaacaatttttagaattgtcgaatttaaacgcccggtaaagtgtcatgtcgtaacaagccgtaactaaaccgtaaaactgtcgacaaagagacacgtacagccgtactcctaagaaatccgtagaacactcgtaaaaaattattttaaacgaattctttgcggtagtttacgatatgttacagataatttacgcaccgtgtttacgtattattacgaacggcctaagtgcatatttacgatttcatttgcggtccggattaacaatcgctttggcggattgttcaagagtcattaaagacaactttacgtaagacacgatactgttcgagtattgtgggctgtgaaagggcagttgtagaatgctgatacaattttaaatctgtaccattctggttccatagtaatgttcagttgtcgaatgatatgcatagccattcgacactttgagtgaaaaacgcacacacgtaactaactccactaattccgtaacagcacgcgtaatcaaacacgtttacaggtcatgatgtacaacgtaaaacagctaaggtaatcgcaacttatcgcgtaaataccgtaataatccctaaagcgcgtaaaatgttcgtaaatggctcatatgtatccgtttcactcggacaacatcgtaaatgtgtgcgcaaatacatcgcaagaatcgtaataaaccgtaacatggccgtaaactactcttaaatcactctaaatagctcttaaaagtgttctgaatcgtagtaaccggtgtacttttacggatttattagaatacgtgaaggataacgtaagaaaaatccgcagtgtga
gi|4 : ccccccttcacatcacggatttttctaacgagtccttaacggatctccgactccgtaggacatccgcaaagcaattcgtgcaaatactctcggaatccgttagacaactcgcacagctcgccaactcgaaggaatgtcaaaaaacaatttttagaattgtcgaatttaaacgcccgCCCCCTTCACACTCA-CA-GATTTTTC-TTATG-AGTCCTT-ACGGA-TCTCCAA--CT-CATAGTCA
gi|4 : aGTAAA---TCAC-TCG---------TCG---GTATCCA--T--TAATAA---C-TCGTC-A-C----A-ACT-C--G----CA-C--AC-A--CTCGT--A--AGGAT-CCA-TG-AAAatcgcaggcatttgtaaatcactcgtcggtatccattaataactcgtcacaactcgcacacactcgtaaggatccatgaaagttgggctaaatttcttgacatgtcaaaaaaaaattatgattgtccacaaattttattttccgtaaatcactcgtaactatcataaactggttgcaagaacacgtaaactgctcttaagaattcgtaaaacactcgtaaaaaaaattttttaacgaatctttgcagttagtttacgatttgttagagatagttttcgagttgtttacagatcattgcgaatgcctaagtgatatttacgatctctttcacatcgggttacgatcgctttacagattgttcagagttattaagagcacttcaagtatagacatgattactttacgagtacatttgggctagtgaaaggagcagttttagaaattgctgatacaattttaatctgtaccatgctgttccaagtaatgtcagttgttgaatgattatacatagccaatttcgaacacttttgagtcaaaaacgtaaacaatcgtaattaactcccaactattcataacagcatgttatcaacatgttaacatgttgtgatgtacacgtaaaaactaaggtaaattgtaactttccgtaaagtactcgtaataatccctaaaagctcgtaaaatgtcataaattgttcataattatccgtgttcactcggaacaaatcgtaaatgtttaccgcaaatacatcgcaagaactcatagtaaatactcttaaatcattcttaaatagctctttaaagtggctgaatcgtaacaatctgtgtacttttacggattcatagaatccgtaagaaaaatctgtgag
gi|4 : acccccttcacactcacagatttttcttatgagtccttacggatctccaactcatagtcaatcgcaggcatttTTTTCCGTAAA---TCAC-TCG-TAA--C-------------TA--TCATA--AA---C-TGGTT-G-CAA-GA-ACA-C--G----TA-A--ACTG--CTCTT--A--AGAAT-TCG-TA-AAACACT-CGTAAAAAA--AATTTTT--TAAC-GAA-TCTTTGC-AGTT--AGTTT-A-CGA-TTT--GT-TAGAGATAGTT----TTCG-A--G-TTGTTTACAGATCAT--T--GCGAA------T-GCC--------TAA----GTG-ATA-------TTT-AC-----GAT-CTCT-----TTCACA--TCGGGTT-A--CGATCGCTTT-ACAGAT---TGTT-C-AGAGTTATT-AAGA-GC-ACTTC--A-----A-GTATAGACATGATTACTTTACGAGTACATTTGGGC--TAGTGAAAGGAG----CAGTT-TT---A-----GAAATTGCTGAT--ACAA--TTTT-AATCTGTACCATGC-----------T-GTTCCA-AGTAA---TG----TCA-GTT-G-TTGA-A-TGA---TTA-T-------AC---AT-------AGCCAATTTCGAACACTTTTG-AGTCAAA-----AA----CGTA-AAC-------AA--------TC------------G---TAATTAACTCCC----AAC--TA---TTCATAACAG--------------CA--TGTT-----ATC-AACATGT-TAAC--------ATGT-TGTGATGTAC-ACGTA-AA--AAC--------TAA-----GGTA--AAT-TGTA------ACTT-TC-C---GTAAAGTACTCGTAATAAT--CCCTAAAA---GCTCGTAAAA-TG-TCATAAA-------------TT-GT-TC---ATA---AT-TA-T-CCGTGT-TCAC----TCG--GAACAA-ATCGT----AAAT--------GTT-----TACCGCA---AATACATCGCAAGAAC------TC-----A-TA----------------------------------------------GTA-AA-TACTCTTAAAT-CAT-TCTTAAATAGCTC---TTTAAAGTG-GCTGAATCGTAAC-AATCTG-TGT----ACTT-TTACGGATTCA-TAG-AATCCGT-AAG-----------------A-AAAATCTGTGAGgttgggctaaatttcttgacatgtcaaaaaaaaattatgattgtccacaaattttattttccgtaaatcactcgtaactatcataaactggttgcaagaacacgtaaactgctcttaagaattcgtaaaacactcgtaaaaaaaattttttaacgaatctttgcagttagtttacgatttgttagagatagttttcgagttgtttacagatcattgcgaatgcctaagtgatatttacgatctctttcacatcgggttacgatcgctttacagattgttcagagttattaagagcacttcaagtatagacatgattactttacgagtacatttgggctagtgaaaggagcagttttagaaattgctgatacaattttaatctgtaccatgctgttccaagtaatgtcagttgttgaatgattatacatagccaatttcgaacacttttgagtcaaaaacgtaaacaatcgtaattaactcccaactattcataacagcatgttatcaacatgttaacatgttgtgatgtacacgtaaaaactaaggtaaattgtaactttccgtaaagtactcgtaataatccctaaaagctcgtaaaatgtcataaattgttcataattatccgtgttcactcggaacaaatcgtaaatgtttaccgcaaatacatcgcaagaactcatagtaaatactcttaaatcattcttaaatagctctttaaagtggctgaatcgtaacaatctgtgtacttttacggattcatagaatccgtaagaaaaatctgtgag
gi|5 : acccccttcacactcacagatttttcttatgagtccttacggatctccaactcatagtcaatcgcaggcatttgtaaatcactcgtcggtatccattaataactcgtcacaactcgcacacactcgtaaggatccatgaaagttgggctaaatttcttgacatgtcaaaaaaaaattatgattgtccacaaattttaTCCGTAAA---TCAC-TTG-TAA--CAATCC---GTAACTA--TCGTA--AA---C-TGGTC-G-TAA-GA-ACA-C--G----TA-A--ACTG--CTCTT--A--AGAAT-CCG-TA-AAACACT-CGTAAAAA---TGTTTTT--AAAC-GAA-TCTTTGC-GGTT--AGTTT-A-CGA-TAT--GT-TACAGAAAATT----TACG-A--G-TTGTTGACGTATTATATT--ACGAA------C-GCC--------TAA----GTG-ATAGATCTATTT--AC-----GAT-TTCA-----TTTGCG--TCGGATT-A--CAATCGTTTT-ACGGAT---TGTT-C-AGAGTCATT-AAGA-AC-ACTT---------ACGTATAGACACGATTACTTTACGAGTATTTTTGGGC--TAGTAAAAGGAG----CAGTT-GT---A-----GAAATTGCTGAT--ACAA--TTTT-AATCTGTTCCAT-----------------------GCAA---TG----TCA-GTT-G-TCGA-A-TGA---TT--T-------GC---AT-------AGCCAATTTCGAACACTTTTG-AGTCAAA-----AA----CGCA-CAC-------AA--------TC------------G---TAACTAAC-CCC----AAC--TA---TTCGCAACAG--------------TA--CGTT-----ATC-AATACGT-TAAC--------AGGT-CGTGATGTAC-ACGTA-AA--AGC--------TAA-----GATA--AAT-CGTA------A-TT-TC-C---GTAAAGTACTCGTAATAAT--CCCTAAAA--AGCTCGTAAAA-TG-TCGTAAA-------------TTCGC-TC---GCA---TT-TA-T-CCGTGT-TCAC----TCG--GAACAA-ATCGT----AAAT--------GTT-----TGCCGCA---AATACTTCGCAATAAC-------C-----G-TA----------------------TGAAC---CATAA-ATGG--CC-CGTA-AA-TACTCTTGAAT-CGT-TCTTAAATAACTC---TTAAAAGTG-TCTGAATCGTAGC-AATCCG-TGT----AGTT-TTACGGATTTG-TAG-AATACGT-AAGGATC--CGT------AAGAAAAATCCG
gi|6 : ttgtccacggatttccttttccgtaaataaCCCTTCACACTTAATGAGATTTTTCCTTACG-AGTCCTT-ACGGA-TCTCCGA--CT-CGTAGTCA
gi|6 : tTTTCCGTAAA---TTAC-CCG-TAAATCACTCGTTAGTAACTA--TCGTA--AA---CATGGTCCG-CAAAGA-ACA-CTAG-----A-G--ACTG--TTTCT--A---GAAT-CCG-TACAAACACT-CGTAAAAAG--------------C-GAA-TCTTTGC-GGTT--AGTTT-A-CGA-TAT--AT-TACGGATAATT----TACG-G--G-TTGTTTACGGATCAT--T--ACGAA------C-GCC--------TAATTAAGTG-ATA-------TTT-AC-----GGT-TTCA-----TTTGCG--TCGGATT-A--CAATCGCTTT-ACGGAT---TGTA-C-AGAGTCATT-AAGA-GC-ACTTT--AC--GCA----TAGACACGATTACTTT------------GGGC--TAGTGAAAGGAG----CAGTT-TT---A-----GTAATTGCTGAT--ACAA--TTTT-AATCTGTACCATT------------------------AA---TG----TCA-GTT-G-TCGA-A-TGA---TTA-T-------GT---AT-------AGCCAATTTCGGACACTTTTG-AGTAAAA-----AA----TGTA-CAC-------AA--------TC------------G---TAACTAACTCCC----AAC--TA---TTCGTAACAG--------------Catcgcaagcattcgtaaaccacccgtcgatannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntttccgtaaattacccgtaaatcactcgttagtaactatcgtaaacatggtccgcaaagaacactagagactgtttctagaatccgtacaaacactcgtaaaaagcgaatctttgcggttagtttacgatatattacggataatttacgggttgtttacggatcattacgaacgcctaattaagtgatatttacggtttcatttgcgtcggattacaatcgctttacggattgtacagagtcattaagagcactttacgcatagacacgattactttgggctagtgaaaggagcagttttagtaattgctgatacaattttaatctgtaccattaatgtcagttgtcgaatgattatgtatagccaatttcggacacttttgagtaaaaaatgtacacaatcgtaactaactcccaactattcgtaacagc
gi|7 : tcccttcacacttaatgagatttttccttacgagtccttacggatctccgactcgtagtcaatcgcaagcattcgtaaaccacccgtcgatannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTATAGACACGATTACTT-ACGAGTACACTGTGGC--TAGTAAAAGGAG----CAGTT-TTGAAA-----GAAAATGCTGAT--ACAA--TTTT-AACCCGTACC--TC-----------T-----CA---TA----TG----CCATGGT-GCTCTA-AGTAA---T--------------------------GCCAGTTTCAAATACTTTTG-AGT-AAA-----AA----CATA-CAGTGTATAAAA--------TC------------G---TAACTAAGTCCC----AAA--TA---TTCGTAACA------------------------------C-AACG----TAAC--------AGCT-CGTAATTTAC-ACGTA-AA--AGC--------TAA-----GCTA--AAT-CGTA------ACTT-TA-----GTAATATACTCGTAACAAT--CCCTAAAA--AGCTCGTAAAA-TG-TAATTAA-------------TT-GG-TC---ATATTCTT-TA-A-A-GTGTCTAAA----TCG--TAATAA-TCCGT----GTACTTTTACTGGTT-----TGTGG-----AATAAAT---AAGAAT------AC-----G-TA---------------------AGAAA
gi|8 : agacgcttttaaCCCCCTTCACACTCT-CG-GATTTTTC-TTGCG-AGTCCTT-ACGGA-TCTCCGA--CT-CGTAGTCAtatataggaatgtgaa
gi|8 : taCCGTAAA---TCAC-TCG-TAA--CAATCC---GCAACAA--TCGTA--AA---C-TGGTC-G-CAA-GA-ACA-C--G----TA-A--ACTG--CTCCT--A--AGAAT-CCG-TA-AAACACT---TCAAAAA--TGTTTTT--TAAC-GAA-TC----------------T-A-CGA-TAT--GT-TACAGATAATT----TACG-A--G-TTGTTTACGTATTAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnataacccgtaaatcactcgtaacaatccgcaacaatcgtaaactggtcgcaagaacacgtaaactgctcctaagaatccgtaaaacacttcaaaaatgttttttaacgaatctacgatatgttacagataatttacgagttgtttacgtattaatggacattttcggctgggtgaacatttaca
gi|9 : tacccccttcacactctcggatttttcttgcgagtccttacggatctccgactcgtagtcannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnataacGTA-TCGTAACAAT--CCCTTTAA--GCTTCGTAAAC-TG-TCGT-AA-------------TT-GCTTC---GTA---TT-TATT-C-GT-T-TCACG---TCG--AAGAAA-TTCGT----AA--T-------G-T-----CGCCGT----AATGCATTGC-AGAAT------TC-----GTTA---------------------ATAATTTTGCGTAA-ATGGGTTC-TGTATAA-TAC---------CGTGGCTTAAATAAATCTTTTTAACAGGT-TCT-AATCGTAACAAATCCA-TATAATAACTTATTACG-----G-TAG-A--TCGT-AA----------------AAA-AAAAACC-TGAATGTGAatggacattttcggctgggtgaacatttaca
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|20 ): GATTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
Unaligned ( gi|24 ): AATTTCCATGACTTCCGAGCTTTGTCGAAAAAATAAAAATCGGATTAGTTCTACAGCAATGAAATGCTAAAACTACAA
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 111 1111111111111 222222 11111111 222222 11111 11111 1 333333333333 11 22222 3333333333333333333333333 1111 1111111 1111111 2222222222222222222222222222222 111 111111111111111 11111111 11111111 11111 111111 11111 2222222222222 11111 1111 111 1111 222222222 11111 4444444444444444444444444444444444444444 111 1111 11111 222222 2
lowQualScore : 4 4 2 3 3 3 7 55 3 7777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 777 4 3 55 88888888 55 55 000 3 3 3 7 4 4 55 8888 4 55 2 55 0 99999 3 55 7 3 4 1111111111111 4 4 666 4 4 4 66 4 0 9999 4 55 1 99999 555555 4 66666666 9999 8 333333 11111 5 22222 2 66 5 66 5 888 88 5 5 55 0 444444444444 66 11 0 66 9999 44 777 00000 7 66 66 4 1111111111111111111111111 666 1111 7 3 3 3 3 666 3 1111111 666 1111111 3 5 99999 7777 3 7777777777777777777777777777777 666 88888 55 111 999999999999999 55 99999 4 0 4 66666666 4 8 4 55 66666666 11111 66 4 222222 5 33333 0 66 777 66 0 0 4 4 4444444444444 4 4 777 777 5 77777 5 5 5555 111 5 0000 777777777 22222 0 777 0 0000000000000000000000000000000000000000 9999 5 000 5 5 5 0000 3 55 11111 1 1 4 4 1 4 4 8888 4 4 4 2 4 44 000000 0 4
lowQualScore : . . . . . . . .. . ............................................................................................................................... ... . . .. ........ .. .. ... . . . . . . .. .... . .. . .. . ..... . .. . . . ............. . . ... . . . .. . . .... . .. . ..... ...... . ........ .... . ...... ..... . ..... . .. . .. . ... .. . . .. . ............ .. .. . .. .... .. ... ..... . .. .. . ......................... ... .... . . . . . ... . ....... ... ....... . . ..... .... . ............................... ... ..... .. ... ............... .. ..... . . . ........ . . . .. ........ ..... .. . ...... . ..... . .. ... .. . . . . ............. . . ... ... . ..... . . .... ... . .... ......... ..... . ... . ........................................ .... . ... . . . .... . .. ..... . . . . . . . .... . . . . . .. ...... . .
lowQualScore : 0 0 1 6 6 6 3 00 6 0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 000 0 6 00 33333333 00 00 000 6 6 6 3 0 0 55 5555 0 55 3 55 3 55555 6 00 3 6 0 3333333333333 4 4 999 4 4 4 11 4 7 4444 0 55 0 33333 666666 4 11111111 4444 9 999999 11111 0 55555 0 99 0 99 0 888 66 0 0 22 0 666666666666 66 66 7 11 4444 66 888 66666 4 11 11 4 4444444444444444444444444 444 4444 3 6 6 6 6 444 6 8888888 444 8888888 6 1 11111 7777 6 2222222222222222222222222222222 444 77777 00 444 888888888888888 00 11111 0 7 0 11111111 4 9 4 55 11111111 11111 11 4 888888 0 11111 1 11 888 11 1 8 4 4 4444444444444 4 4 888 888 0 44444 6 0 6666 000 0 6666 666666666 55555 2 888 9 9999999999999999999999999999999999999999 0000 0 222 0 0 0 6666 4 11 55555 9 0 0 0 4 0 0 5555 0 0 0 2 0 77 000000 0 5
consensus : CCCCCTTCACACTCA-CG-GATTTTTC-TTACG-AGTCCTT-ACGGA-TCTCCGA--CT-CGTAGTCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTTCCGTAAA---TCAC-TCG-TAA--CAATCC---GTAACTA--TCGTA--AA---C-TGGTC-G-CAA-GA-ACA-C--G----TA-A--ACTG--CTCTTA--A--GAA-TCCG--TA-A-AACACT-CGTAAAAAACGTTTTTAAA--CGAAT-CTTTGC-GGT--TAGTTT-A-CGAT-AT--GT-TACGGATAATT----TACGAG-T--TGTTTACGNATTAT--T--ACGAA------C-GCC--------TAA----GTG-ATA------TTTAC-----GAT-TTCA-----TTCGCG--TCGGATT-A--CAATCGCTTT-ACGGAT---TGTT-C-AGAGTCATT-AAGA-GC-ACTTTAC--GTA-A---TATAGACACGATTACTTTACGAGTACTTTTGGGC--TAGTGAAAGGAG----CAGTT-GT---A-----GAAATTGCTGAT--ACAA--TTTT-AATCTGTACCATTC-----------T-GTTCCA-AGTAA---TG----TCA-GTT-G-TCGA-A-TGA---TTA-T-------GC---AT-------AGCCAATTTCGAACACTTTTG-AGTCAAA-----AA----CGTA-CAC-------AA--------TC------------G---TAACTAACTCCCG----AC--TA---TTCGTAACAG--------------CA--CGTT-----ATC-AACACGT-TAAC--------AGGT-CGTGATGTAC-ACGTA-AA--AGC--------TAA-----GGTA--AAT-CGTA------ACTT-TC-C---GTAAAGTACTCGTAATAAT--CCC---TAAAA--AGCTCGTAAAA-TG-TCGTAAA-------------TT-GCT-C---GTA---TT-TA-T-C-GTGT-TCAC----TCG--AAACAA-ATCGT----AAATT-------GTT-----CGCCGCA---AATACATCGCAAGAAC------TC-----G-TA---------------------ATAAAC---CGTAA-ATGG--CC-CGTA-AA-TACT----CTTAAAT-CGTTCTTAAATAGCTCTTTAA-AGTG-TCTGAATCGTAAC-AATCCG-TGT----ACTT-TTACGGATTTG-TAG-AATACGT-AAGGAT-CCGT------AAGAAAAATCCGTGAGTGTGA
Reference ( family-971 ) : CCCCCTTCACACTCA-CG-GATTTTTC-TTACG-AGTCCTT-ACGGA-TCTCCGA--CT-CGTAGTCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTTCCGTAAA---TCAC-TCG-TAA--CAATCC---GTAACTA--TCGTA--AA---C-TGGTC-G-CAA-GA-ACA-C--G----TA-A--ACTG--CTCTTA--A--GAA-TCCG--TA-A-AACACT-CGTAAAAAACGTTTTTAAA--CGAAT-CTTTGC-GGT--TAGTTT-A-CGAT-AT--GT-TACGGATAATT----TACGAG-T--TGTTTACGNATTAT--T--ACGAA------C-GCC--------TAA----GTG-ATA------TTTAC-----GAT-TTCA-----TTCGCG--TCGGATT-A--CAATCGCTTT-ACGGAT---TGTT-C-AGAGTCATT-AAGA-GC-ACTTTAC--GTA-G---TATAGACACGATTACTTTACGAGTACTTTTGGGC--TAGTGAAAGGAG----CAGTT-GT---A-----GAAATTGCTGAT--ACAA--TTTT-AATCTGTACCATTC-----------T-GTTCCA-AGTAA---TG----TCA-GTT-G-TCGA-A-TGA---TTA-T-------GC---AT-------AGCCAATTTCGAACACTTTTG-AGTCAAA-----AA----CGTA-CAC-------AA--------TC------------G---TAACTAACTCCCG----AC--TA---TTCGTAACAG--------------CA--CGTT-----ATC-AACACGT-TAAC--------AGGT-CGTGATGTAC-ACGTA-AA--AGC--------TAA-----GGTA--AAT-CGTA------ACTT-TC-C---GTAAAGTACTCGTAATAAT--CCC---TAAAA--AGCTCGTAAAA-TG-TCGTAAA-------------TT-GCT-C---GTA---TT-TA-T-C-GTGT-TCAC----TCG--AAACAA-ATCGT----AAATT-------GTT-----CGCCGCA---AATACATCGCAAGAAC------TC-----G-TA---------------------ATAAAC---CGTAA-ATGG--CC-CGTA-AA-TACT----CTTAAAT-CGTTCTTAAATAGCTCTTNAA-AGTG-TCTGAATCGTAAC-AATCCG-TGT----ACTT-TTACGGATTTG-TAG-AATACGT-AAGGAT-CCGT------AAG-AAAATCCGTGAGTGTGA
gi|1 : TTTTTC-TTACGTAGTCCTT-ACGGAATCTCAGAGACT-CGTAGTCA
gi|1 : CG-TAA--C----C---GTAACTA--TCGTA--AAACTT-TGGTC-G-CAA-AA-TCATC--GGGTATA-A--AC----CTGTAACGA--AAA-TCCG--TATA-AACACTTCGTAAAACGCG-----------AAAT-CTTTGCTGGTCTTAGTTTTA-CGAT-ATTAATATACGGATAACTCCCTTACGAGGT--TGTTTACGGACAAT-----ACGAAAACTGCT-GCTATAAAATATAA----GTG-ATAATCCT-TCCACCCTCGGGTGTTCACCTATTTTTCG--T---AT--A--AAATCGCTTT-ACGGATAACTGTAAC-AGAGTTATTTAAGATGCCACTTT-----TA-ACTCTATAGACACGATTAC---------ATTTCCCGGCAATAGTGAAAAGAGAACGCAGTTAGT---AACAATGAAA---CTTATCCACAAGATTTT-AATCTGTG--AGGC-----------C-GAT----GGTAAATGTGGTTCTTA-GTTTG-TCGA-A-TGACATTTACT-------GCCGTAT-------AGCCAATT-CGGACACTGTTGTAGTTAAA-----AA----AATAATACTT-----AACACCCATTTC------------GAAATAACTAACTCCGGTGAAAC--TACATTTAATAACAGTAACACCAAGAAAACA--CGTTTAACTATC-AACACTG-CAAC--------AGGTACGTGATGTACAACGTAGAA--AGCATAGATATTAATACAGGGTATGAGTGCGTAAACTCCATTT-TC-CGTGGTAAAGTACTC-CAATAATTCTCC---TAAGATGAACCCGTAAAATTG-TTCTAAAATATGGATTAAGGTT-GCT-CATAATA---TTGTAGT-C-GTGT-TCACTACTTCAACAAACAA-ATCGTGGAGAAATT-------GTTTAGTGCTCCGCACCCAATACATCGCAAGAACCTTACATC-----G-TAGTATCACCGTGAGAACTCGTAATAAAC---CGTAA-ATGG--CC-CGTA-CA-TGCT----CATAAAT-CA---CTAAGTAGGTCTTTAA-AGTG-TCTGAATTGTAAC-TACCCG-TGT----ACTT-TTACGGATTTG-TAG-AATACTT-TAGGAT-CCGT------AAG-AAAatcgcaaacagtacgctattttcgtaaatcagctggtcgtcggatagaatcgttaagtagtcctcttcagtgcatgtctcggcacacagctgcgttcaggacagtgctctgtgaaaggttgggagacatcctgatatctatatttaaatagagcatgtcaaccaacttaatggtttttacgaagctctgtccacggatttcgtgtcccatcccgttaaattaccccgatttaaacctcaacgtaaccgtaactatcgtaaaactttggtcgcaaaatcatcgggtataaacctgtaacgaaaatccgtataaacacttcgtaaaacgcgaaatctttgctggtcttagttttacgatattaatatacggataactcccttacgaggttgtttacggacaatacgaaaactgctgctataaaatataagtgataatccttccaccctcgggtgttcacctatttttcgtataaaatcgctttacggataactgtaacagagttatttaagatgccacttttaactctatagacacgattacatttcccggcaatagtgaaaagagaacgcagttagtaacaatgaaacttatccacaagattttaatctgtgaggccgatggtaaatgtggttcttagtttgtcgaatgacatttactgccgtatagccaattcggacactgttgtagttaaaaaaataatacttaacacccatttcgaaataactaactccggtgaaactacatttaataacagtaacaccaagaaaacacgtttaactatcaacactgcaacaggtacgtgatgtacaacgtagaaagcatagatattaatacagggtatgagtgcgtaaactccattttccgtggtaaagtactccaataattctcctaagatgaacccgtaaaattgttctaaaatatggattaaggttgctcataatattgtagtcgtgttcactacttcaacaaacaaatcgtggagaaattgtttagtgctccgcacccaatacatcgcaagaaccttacatcgtagtatcaccgtgagaactcgtaataaaccgtaaatggcccgtacatgctcataaatcactaagtaggtctttaaagtgtctgaattgtaactacccgtgtacttttacggatttgtagaatactttaggatccgtaagaaa
gi|10 : tttttcttacgtagtccttacggaatctcagagactcgtagtcaatcgcaaacagtacgctattttcgtaaatcagctggtcgtcggatagaatcgttaagtagtcctcttcagtgcatgtctcggcacacagctgcgttcaggacagtgctctgtgaaaggttgggagacatcctgatatctatatttaaatagagcatgtcaaccaacttaatggtttttacgaagctctgtccacggatttcgtgtcccatcccgttaaattaccccgatttaaacctcaaCCCCCTTCACACTCA-CA-AAT---------------CCTT-ACGGA-TCTCCGA--CT-CGTAGTCA
gi|10 : ataA-TCTGATTG-A-AACA----GTAAAAAAAATGT----A--CGAGT-GTGTGC-GAT--CTGT------GAT-GA--GT-TACGGAT-ACC----GACGAG-T--GATTTACGAATACT--T--GCGAatcgcaagtattcgtaaatcactcgtcggtatccgtaactcatcacagatcgcacacactcgtacattttttttactgtttcaatcagataccgtgccatgtaaagcgtaaattctgagcccaaccgtgaattttttgacatgtcaattttttttttatgattgtccacggatttcgttttccgtaaatcactcgtaacaatctgtaactatcgtaaactggtcgcaagaacacgtaaacactgctcttatgaatccgtaaaacactcgtaaaaagtg
gi|10 : atacccccttcacactcacaaatccttacggatctccgactcgtagtcaaTTTTCCGTAAA---TCAC-TCG-TAA--CAATCT---GTAACTA--TCGTA--AA---C-TGGTC-G-CAA-GA-ACA-C--G----TA-AACACTG--CTCTTA--T--GAA-TCCG--TA-A-AACACT-CGTAAAAAaccgtgccatgtaaagcgtaaattctgagcccaaccgtgaattttttgacatgtcaattttttttttatgattgtccacggatttcgttttccgtaaatcactcgtaacaatctgtaactatcgtaaactggtcgcaagaacacgtaaacactgctcttatgaatccgtaaaacactcgtaaaaagtg
gi|11 : atacccccttcacactcacaaatccttacggatctccgactcgtagtcaatcgcaagtattcgtaaatcactcgtcggtatccgtaactcatcacagatcgcacacactcgtacattttttttactgtttcaatcagataccgtgccatgtaaagcgtaaattctgagcccaaccgtgaattttttgacatgtcaattttttttttatgattgtccacggatttcgCGAG-T--TGTTTACATACTAT--T--ACGAA------C-GCC--------TAA----GTG-ATA------TTTAC-----GAT-TTCA-----TTTGCG--TCGGATT-A--CAATCGCTTT-ACGGAT---TGTT-C-AGAGTCATT-AAGA-GC-ACTTTAC--GTA-----TATA--CACGATTACTTTACGAGTA-TTTTGGGC--TAGTGAAAGGAG----CAGTT-GT---A-----GAAATTGCTGAT--AAAA--TTTT-AATATGTACCTGTC-----------T-GTTCTA-AGTAA---TG----TCA-GTT-G-TCGA-A-TGA---TTA-T-------GC---AT-------AGCCAATTTCGAACACTTTTG-AATCAAA-----AG----CGCA-CAC-------AA--------TC------------G---TAACTAAC-CCCA----AC--TC---TTCGTAACAG--------------CA--CGTT-----ATC-AACACGT-TAAgtg
gi|12 : TTTTCCGTAAA---TAAT-TTACTAA--AAA-CT---TT--CTT--TCAT------------GTC-T-TAA-TA-AC-----G----TA-A--ACTG--CTCGTA--AAAGAA-TCCG--TT-TTAACATT-AGTAAAA--CTTTTTTAAAAACAAAG---TTAC-GGT--TA-CTT-ATCAATTAT--GT-TGCA-ATAGTT----TACGTG-T--TATATACAGATTAT--TTAAC-AA------T-GCG--------TAG----GTG-ATA------TTTAC-----GAT-TACA------TCAAG--TCGGG-T-AGCCAACAGTCTC-ACGGAT---TGT----ATAGTCACT-AA
gi|13 : cgtaaaggttccggaaagtggtgaacattttttacgatgtcaaaaaatcaacgattgtccaacggattttaCTTT-----TA-A---TATAGACACGATTACTT-ACGAGTACACTGTGGC--TAGTAAAAGGAG----CAGTT-AT---AAAAG-GAAA-TGCTGAT--ACAA--TTTT-AACCTGTACCTCTCATATGCCACGGT-GCTCTA-AGTAA---TG----CCA-GTT-G-TCGA-A-TTA---TTA-T-------AC---AT-------AGCCAATTTCAAATACTTTTG-AGT-ATA-----AA----CATA-TAT-------AA--------TC------------G---TAACTAACTCCCG----AA--TA---TTCGTAACAG--------------CA--CG-------------------TAAC--------AGCT-CGTAATTTAC-ACGTA-AA--AGT--------TAG-----GATA--AAT-CGTA------A
gi|14 : g--AGC--------TAT-----GCTA--AGT-CGTA------ACTT----A---GTAATGTACTCGTAACAAT--CCC---TATAA--AGCTCGTAAAC-TG-TCGTAAA-------------TT-GCT-C---GTA---TT-TATT-C-GTTT-TCAC----TCG--AAAGAA-ATCGT----AAA-T-------GTT-----CGCCGTA---AATGCATTGCAAGAAC------TC-----G-TA---------------------ATAAAT---CGTAA-ATGG--TC-TGTA-AA-TACT----C-------CGTTCTTAAATAACTTTTTAA-AGTG-TCTAAATCGTAAC-AATCCA-TGT----ACTT-TTACGGA---------------T-AAGGAT-TCGTAAAA--AAA-AAAATCCGTGAtnnnnnnnnnnnnnnnnnnnnnnnnncct
gi|15 : CCCCCTTCACATTCA-CG-GATTTTTC-TAACG-AGTCCTT-ACGGA-TCTCCGA--CT-CGTAGACAa
gi|15 : CCGTAAA---TCAT-TCG-TAA--CAAACC---GTAACTA--TCGTA--AA---C-TGGTC-G-CAA-Gnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaacatttttatgattgtcgaatttaacccgtaaatcattcgtaacaaaccgtaactatcgtaaactggtcgcaag
gi|16 : cccccttcacattcacggatttttctaacgagtccttacggatctccgactcgtagacannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaacatttttatgattgtcgaatttaacTACCATGC-----------T-GTTCCA-AGTAA---TG----CCA-GTT-G-TCAA-A-TGA---TTA-T-------AC---ATTGTACATGGCCAATTTCGAACACTTTTG-AGTCAAA-----AA----TGTA-AAC-------TA--------TCGTGCATGTACATG---TAACTAACTCCCG----AC--TA---TTCTTAACAG--------------TA--CGTT-----AT---ACATGTATAACCATGTAAAAGAT-CGTGATTTAC-GCTTA-AA--A
gi|17 : aA---AATGCTTTGCAAGAA-------TCAAGTAG-CA---------------------ATAAAC---CTTAA-ATGG--CCTCATA-T--TGCT----CGTAAATACACT---AAACA-TTATTTAA-AGTG-TCTAAATCGTAAC-AATCCGATGT----ACGT-ATACTGATTTG-AAGTAATGCGT-AAAGAT-TCGTCAGAAAAAGAAAAATCC-TGAGTGT
gi|18 : atgctaaccttTAA---TG-----CATGTT-G-TCAAGA-TGA---TTA-TTCATTTGAC---AT-------GGCCAATTTCGA-CACTTTTG-AGTCAAATGATTAACTATCGTG-CAT-------GT--------CT------------G---TAACTAATTCCCG----ACTTTA---TTT-TAAC----------------TA--CGTT-----
gi|19 : gcgttcatagtCCACCTTCATACACA-CG-GATTTT-C-TTACG-AGTCATT-TCGGATTTTCCGA--CT-CGAAGTCAcatgtttaccttgttatata
gi|2 : aCCCCCTTCACACTCA-CG-GATTTTTC-TTACG-AGTCCTT-ACGGA-TCTCCGA--CT-CGTAGTCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTTCCGTAAA---TCAC-TCG-TAA--CAATCT---GTAACTA--TCGTA--AA---C-TTGTT-G-CAA-GA-ACA-C--G----TA-A--ACTG--CTCTTA--A--GAA-ACCG--TA-A-AACACT-CGTAAAAAATGTTTTTAAA--CGAAT-CTTTGC-GGT--TAGTTT-A-CGAT-AT--GT-TACAGATAATT----TACGAG-T--TGTTTACGTATTAT--T--ACGAA------C-GCC--------TAT----GTG-ATA------TT-AC-----GAT-TTCA-----TTTGTG--TCGGATT-A--CAGTCGCTTT-A-GGAT---TGTT-C-AGAGTCATT-AAGA-GC-ACTTTACATGTACG---TATAGACACGATTACTTTACGAGTATTTTTGGGC--TAGTGAAAGGAG----CAGTT-GT---A-----GAAATTGCTGAT--GCAA--TTTT-AATCTGTACCATTC-----------T-GTTTCA-AGTAA---TG----TCA-GTT-G-TCGA-A-TGA---TTA-T-------GC---AT-------AGCCAATTTCGAACACTTTTG-AGTCAAA-----AA----CGCA-CAC-------AA--------TC------------G---TAACTAACTCTCA----AC--TA---TTCGTAACAG---------------A--CGTT-----ATC-AACACGT-TAAC--------AGGT-CGTGATGTAC-ACGTA-AA--AGC--------TAA-----GGTA--AAT-CGTA------ACTT-TC-C---GTAAAGTACTCGTAATAAT--CCC---TAAAA--ATCTCGTAAAA-TG-TCGTAAA-------------TT-GTT-C---GTA---TT-TA-T-C-GTGT-TCAC----TCG--AAACAA-ATCGT----AAATT-------GTT-----TGCCGCA---AATACATCGCAAGAAC------TT-----G-TG---------------------ATAAAA---CGTAA-ATGG--CC-CGTA-AA-TACT----CTTAAAT-CATTCTTAAATAGCTCTTAAA-TGTG-TCTGAATCGTAGC-AATCCG-TGT----ACTT-TTACGGATTTG-TAG-AATACGT-AAGGAT-CCGT------AAG-AAAATCCATGAGTGTGAaatcaagccggtaaatatctcgtcgactagtgttttatactttcatttgccacgactcgcagcaccactcgtaag
gi|21 : CCCTCTTCATACTCA-TG-GATTTTTC-GTACT-AGTAATT-ACGGA-TCTCCGA--CT-CGTAGTCA
gi|22 : taTCTTTAG-AGTG-TCTAAATCGTAAC-AATCCG-TGT----ACTT-TTACTGGTTTG-TGG-AATACAT-AAGAAT-ACGT------AAG-AAAAatcaaaagcattcgtaaatcactcgtcgg
gi|23 : TAGTTCTTAAA-AGTG-TGTAAATCGTAAC-AATTCG-TGT----ACTT-TTACGGATTTG-TGG-AATACGT-AAGGAT-CCGT------AAACAAAATCCGatatgggaatg
gi|25 : TTCACACTCA-AG-AATTTT-C-TTAAG-AGTCGTT-ATTGA-TCTCCGA--TT-CGTAGTCA
gi|26 : accacaG--------------CA--CGTT-----ATC-AACACGT-TAAC--------AGGT-CGGTATGTAC-ACGTA-AA--AGC--------TAA-----GGTA--AAT-CGTA------atttgcaagcatt
gi|3 : CCCCCTTCACA-TCA-CG-GATTTTTC-TAACG-AGTCCTTAACGGA-TCTCCGA--CTCCGTAG
gi|3 : cGTAAAGTGTCATGTCG-TAA--CAAGCC---GTAACTAAACCGTA--AAA--C-TG-TC-GACAAAGAGACA-C--G----TACA--GCCGTACTCCTA--A--GAAATCCG--TA-G-AACACT-CGTAAAAAATTATTTTAAA--CGAATTCTTTGC-GGT---AGTTT-A-CGAT-AT--GT-TACAGATAATT----TACGCA-CCGTGTTTACGTATTAT--T--ACGAA------CGGCC--------TAA----GTGCATA------TTTAC-----GAT-TTCA-----TTTGCGGTCCGGATTAA--CAATCGCTTTGGCGGAT---TGTT-CAAGAGTCATT-AAAG-ACAACTTTAC--GTA--------AGACACGA-TACTGTTCGAGTA-TTGTGGGC--T-GTGAAAGG-G----CAGTT-GT---A-----GAA--TGCTGAT--ACAA--TTTTAAATCTGTACCATTC-----------TGGTTCCATAGTAA---TGT---TCA-GTT-G-TCGA-A-TGA----TA-T-------GC---AT-------AGCCA--TTCG-ACAC-TTTG-AGTGAAA-----AA----CGCA-CAC-------A----------C------------G---TAACTAACTCC------AC--TAAT-TCCGTAACAG--------------CACGCGTA-----ATCAAACACGT-TTAC--------AGGT-CATGATGTACAACGTA-AAACAGC--------TAA-----GGT---AAT-CGCA------ACTTATCGC---GTAAA-TAC-CGTAATAAT--CCC---T--AA--AGCGCGTAAAA-TGTTCGTAAA-------------TG-GCT-C---ATA---TG-TA-TCC-GT-T-TCAC----TCG---GACAACATCGT----AAA-T-------GTG-----TG-CGCA---AATACATCGCAAGAA-------TC-----G-TA---------------------ATAAAC---CGTAACATGG---C-CGTA-AACTACT----CTTAAAT-CACTC-TAAATAGCTCTTAAA-AGTGTTCTGAATCGTAGT-AACCGG-TGT----ACTT-TTACGGATTTATTAG-AATACGTGAAGGATAACGT------AAGAAAAATCCGC-AGTGTGAgacatccgcaaagcaattcgtgcaaatactctcggaatccgttagacaactcgcacagctcgccaactcgaaggaatgtcaaaaaacaatttttagaattgtcgaatttaaacgcccggtaaagtgtcatgtcgtaacaagccgtaactaaaccgtaaaactgtcgacaaagagacacgtacagccgtactcctaagaaatccgtagaacactcgtaaaaaattattttaaacgaattctttgcggtagtttacgatatgttacagataatttacgcaccgtgtttacgtattattacgaacggcctaagtgcatatttacgatttcatttgcggtccggattaacaatcgctttggcggattgttcaagagtcattaaagacaactttacgtaagacacgatactgttcgagtattgtgggctgtgaaagggcagttgtagaatgctgatacaattttaaatctgtaccattctggttccatagtaatgttcagttgtcgaatgatatgcatagccattcgacactttgagtgaaaaacgcacacacgtaactaactccactaattccgtaacagcacgcgtaatcaaacacgtttacaggtcatgatgtacaacgtaaaacagctaaggtaatcgcaacttatcgcgtaaataccgtaataatccctaaagcgcgtaaaatgttcgtaaatggctcatatgtatccgtttcactcggacaacatcgtaaatgtgtgcgcaaatacatcgcaagaatcgtaataaaccgtaacatggccgtaaactactcttaaatcactctaaatagctcttaaaagtgttctgaatcgtagtaaccggtgtacttttacggatttattagaatacgtgaaggataacgtaagaaaaatccgcagtgtga
gi|4 : ccccccttcacatcacggatttttctaacgagtccttaacggatctccgactccgtaggacatccgcaaagcaattcgtgcaaatactctcggaatccgttagacaactcgcacagctcgccaactcgaaggaatgtcaaaaaacaatttttagaattgtcgaatttaaacgcccgCCCCCTTCACACTCA-CA-GATTTTTC-TTATG-AGTCCTT-ACGGA-TCTCCAA--CT-CATAGTCA
gi|4 : aGTAAA---TCAC-TCG---------TCG---GTATCCA--T--TAATAA---C-TCGTC-A-C----A-ACT-C--G----CA-C--AC-A--CTCGTA--A--GGA-TCCA--TG-A-AAatcgcaggcatttgtaaatcactcgtcggtatccattaataactcgtcacaactcgcacacactcgtaaggatccatgaaagttgggctaaatttcttgacatgtcaaaaaaaaattatgattgtccacaaattttattttccgtaaatcactcgtaactatcataaactggttgcaagaacacgtaaactgctcttaagaattcgtaaaacactcgtaaaaaaaattttttaacgaatctttgcagttagtttacgatttgttagagatagttttcgagttgtttacagatcattgcgaatgcctaagtgatatttacgatctctttcacatcgggttacgatcgctttacagattgttcagagttattaagagcacttcaagtatagacatgattactttacgagtacatttgggctagtgaaaggagcagttttagaaattgctgatacaattttaatctgtaccatgctgttccaagtaatgtcagttgttgaatgattatacatagccaatttcgaacacttttgagtcaaaaacgtaaacaatcgtaattaactcccaactattcataacagcatgttatcaacatgttaacatgttgtgatgtacacgtaaaaactaaggtaaattgtaactttccgtaaagtactcgtaataatccctaaaagctcgtaaaatgtcataaattgttcataattatccgtgttcactcggaacaaatcgtaaatgtttaccgcaaatacatcgcaagaactcatagtaaatactcttaaatcattcttaaatagctctttaaagtggctgaatcgtaacaatctgtgtacttttacggattcatagaatccgtaagaaaaatctgtgag
gi|4 : acccccttcacactcacagatttttcttatgagtccttacggatctccaactcatagtcaatcgcaggcatttTTTTCCGTAAA---TCAC-TCG-TAA--C-------------TA--TCATA--AA---C-TGGTT-G-CAA-GA-ACA-C--G----TA-A--ACTG--CTCTTA--A--GAA-TTCG--TA-A-AACACT-CGTAAAAAAAATTTTTTAA--CGAAT-CTTTGC-AGT--TAGTTT-A-CGAT-TT--GT-TAGAGATAGTT----TTCGAG-T--TGTTTACAGATCAT--T--GCGAA------T-GCC--------TAA----GTG-ATA------TTTAC-----GAT-CTCT-----TTCACA--TCGGGTT-A--CGATCGCTTT-ACAGAT---TGTT-C-AGAGTTATT-AAGA-GC-ACTTCA-----A-G---TATAGACATGATTACTTTACGAGTACATTTGGGC--TAGTGAAAGGAG----CAGTT-TT---A-----GAAATTGCTGAT--ACAA--TTTT-AATCTGTACCATGC-----------T-GTTCCA-AGTAA---TG----TCA-GTT-G-TTGA-A-TGA---TTA-T-------AC---AT-------AGCCAATTTCGAACACTTTTG-AGTCAAA-----AA----CGTA-AAC-------AA--------TC------------G---TAATTAACTCCCA----AC--TA---TTCATAACAG--------------CA--TGTT-----ATC-AACATGT-TAAC--------ATGT-TGTGATGTAC-ACGTA-AA--AAC--------TAA-----GGTA--AAT-TGTA------ACTT-TC-C---GTAAAGTACTCGTAATAAT--CCC---TAAAA---GCTCGTAAAA-TG-TCATAAA-------------TT-GTT-C---ATA---AT-TA-T-CCGTGT-TCAC----TCG--GAACAA-ATCGT----AAAT--------GTT-----TACCGCA---AATACATCGCAAGAAC------TC-----A-TA----------------------------------------------GTA-AA-TACT----CTTAAAT-CATTCTTAAATAGCTCTTTAA-AGTG-GCTGAATCGTAAC-AATCTG-TGT----ACTT-TTACGGATTCA-TAG-A-----------AT-CCGT------AAGAAAAATCTGTGAGgttgggctaaatttcttgacatgtcaaaaaaaaattatgattgtccacaaattttattttccgtaaatcactcgtaactatcataaactggttgcaagaacacgtaaactgctcttaagaattcgtaaaacactcgtaaaaaaaattttttaacgaatctttgcagttagtttacgatttgttagagatagttttcgagttgtttacagatcattgcgaatgcctaagtgatatttacgatctctttcacatcgggttacgatcgctttacagattgttcagagttattaagagcacttcaagtatagacatgattactttacgagtacatttgggctagtgaaaggagcagttttagaaattgctgatacaattttaatctgtaccatgctgttccaagtaatgtcagttgttgaatgattatacatagccaatttcgaacacttttgagtcaaaaacgtaaacaatcgtaattaactcccaactattcataacagcatgttatcaacatgttaacatgttgtgatgtacacgtaaaaactaaggtaaattgtaactttccgtaaagtactcgtaataatccctaaaagctcgtaaaatgtcataaattgttcataattatccgtgttcactcggaacaaatcgtaaatgtttaccgcaaatacatcgcaagaactcatagtaaatactcttaaatcattcttaaatagctctttaaagtggctgaatcgtaacaatctgtgtacttttacggattcatagaatccgtaagaaaaatctgtgag
gi|5 : acccccttcacactcacagatttttcttatgagtccttacggatctccaactcatagtcaatcgcaggcatttgtaaatcactcgtcggtatccattaataactcgtcacaactcgcacacactcgtaaggatccatgaaagttgggctaaatttcttgacatgtcaaaaaaaaattatgattgtccacaaattttaTT-TC-C---GTAAATAATCCGTA--AAT--CACTTGTAACA--ATC-CGT-AAC-TA-TCGTAAA-------------CT-GGT-C---GTA---
gi|5 : ttgtccacggatttcctTCCGTAAA---TCAC-TTG-TAA--CAATCC---GTAACTA--TCGTA--AA---C-TGGTC-G-TAA-GA-ACA-C--G----TA-A--ACTG--CTCTTA--A--GAA-TCCG--TA-A-AACACT-CGTAAAAA-TGTTTTTAAA--CGAAT-CTTTGC-GGT--TAGTTT-A-CGAT-AT--GT-TACAGAAAATT----TACGAG-T--TGTTGACGTATTATATT--ACGAA------C-GCC--------TAA----GTG-ATAGATCTATTTAC-----GAT-TTCA-----TTTGCG--TCGGATT-A--CAATCGTTTT-ACGGAT---TGTT-C-AGAGTCATT-AAGA-AC-ACTT-AC--GTA-------TAGACACGATTACTTTACGAGTATTTTTGGGC--TAGTAAAAGGAG----CAGTT-GT---A-----GAAATTGCTGAT--ACAA--TTTT-AATCTGTTCCAT-----------------------GCAA---TG----TCA-GTT-G-TCGA-A-TGA---TT--T-------GC---AT-------AGCCAATTTCGAACACTTTTG-AGTCAAA-----AA----CGCA-CAC-------AA--------TC------------G---TAACTAAC-CCCA----AC--TA---TTCGCAACAG--------------TA--CGTT-----ATC-AATACGT-TAAC--------AGGT-CGTGATGTAC-ACGTA-AA--AGC--------TAA-----GATA--AAT-CGTA------A-TT-TC-C---GTAAAGTACTCGTAATAAT--CCC---TAAAA--AGCTCGTAAAA-TG-TCGTAAA-------------TTCGCT-C---GCA---TT-TA-T-CCGTGT-TCAC----TCG--GAACAA-ATCGT----AAAT--------GTT-----TGCCGCA---AATACTTCGCAATAAC-------C-----G-TA----------------------TGAAC---CATAA-ATGG--CC-CGTA-AA-TACT----CTTGAAT-CGTTCTTAAATAACTCTTAAA-AGTG-TCTGAATCGTAGC-AATCCG-TGT----AGTT-TTACGGATTTG-TAG-AATACGT-AAGGAT-CCGT------AAGAAAAATCCGagaacacgtaaactgctcttaagaatccgtaaaacactcgtaaaaatgtttttaaacgaatctttgcggttagtttacgatatgttacagaaaatttacgagttgttgacgtattatattacgaacgcctaagtgatagatctatttacgatttcatttgcgtcggattacaatcgttttacggattgttcagagtcattaagaacacttacgtatagacacgattactttacgagtatttttgggctagtaaaaggagcagttgtagaaattgctgatacaattttaatctgttccatgcaatgtcagttgtcgaatgatttgcatagccaatttcgaacacttttgagtcaaaaacgcacacaatcgtaactaaccccaactattcgcaacagtacgttatcaatacgttaacaggtcgtgatgtacacgtaaaagctaagataaatcgtaatttccgtaaagtactcgtaataatccctaaaaagctcgtaaaatgtcgtaaattcgctcgcatttatccgtgttcactcggaacaaatcgtaaatgtttgccgcaaatacttcgcaataaccgtatgaaccataaatggcccgtaaatactcttgaatcgttcttaaataactcttaaaagtgtctgaatcgtagcaatccgtgtagttttacggatttgtagaatacgtaaggatccgtaagaaaaatccg
gi|6 : ttgtccacggatttccttttccgtaaataaCCCTTCACACTTAATGAGATTTTTCCTTACG-AGTCCTT-ACGGA-TCTCCGA--CT-CGTAGTCA
gi|6 : tTTTCCGTAAA---TTAC-CCG-TAAATCACTCGTTAGTAACTA--TCGTA--AA---CATGGTCCG-CAAAGA-ACA-CTAG-----A-G--ACTG--TTTCTA-----GAA-TCCG--TACA-AACACT-CGTAAAAAGCG------------AAT-CTTTGC-GGT--TAGTTT-A-CGAT-AT--AT-TACGGATAATT----TACGGG-T--TGTTTACGGATCAT--T--ACGAA------C-GCC--------TAATTAAGTG-ATA------TTTAC-----GGT-TTCA-----TTTGCG--TCGGATT-A--CAATCGCTTT-ACGGAT---TGTA-C-AGAGTCATT-AAGA-GC-ACTTTAC--GCA-------TAGACACGATTACTTT------------GGGC--TAGTGAAAGGAG----CAGTT-TT---A-----GTAATTGCTGAT--ACAA--TTTT-AATCTGTACCATT------------------------AA---TG----TCA-GTT-G-TCGA-A-TGA---TTA-T-------GT---AT-------AGCCAATTTCGGACACTTTTG-AGTAAAA-----AA----TGTA-CAC-------AA--------TC------------G---TAACTAACTCCCA----AC--TA---TTCGTAACAG--------------Catcgcaagcattcgtaaaccacccgtcgatannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntttccgtaaattacccgtaaatcactcgttagtaactatcgtaaacatggtccgcaaagaacactagagactgtttctagaatccgtacaaacactcgtaaaaagcgaatctttgcggttagtttacgatatattacggataatttacgggttgtttacggatcattacgaacgcctaattaagtgatatttacggtttcatttgcgtcggattacaatcgctttacggattgtacagagtcattaagagcactttacgcatagacacgattactttgggctagtgaaaggagcagttttagtaattgctgatacaattttaatctgtaccattaatgtcagttgtcgaatgattatgtatagccaatttcggacacttttgagtaaaaaatgtacacaatcgtaactaactcccaactattcgtaacagc
gi|7 : tcccttcacacttaatgagatttttccttacgagtccttacggatctccgactcgtagtcaatcgcaagcattcgtaaaccacccgtcgatannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnAGA--C-GCTTT-----TA-A---TATAGACACGATTACTT-ACGAGTACACTGTGGC--TAGTAAAAGGAG----CAGTT-TTGAAA-----GAAAATGCTGAT--ACAA--TTTT-AACCCGTACC--TC-----------T-----CA---TA----TG----CCATGGT-GCTCTA-AGTAA---T--------------------------GCCAGTTTCAAATACTTTTG-AGT-AAA-----AA----CATA-CAGTGTATAAAA--------TC------------G---TAACTAAGTCCCA----AA--TA---TTCGTAACA------------------------------C-AACG----TAAC--------AGCT-CGTAATTTAC-ACGTA-AA--AGC--------TAA-----GCTA--AAT-CGTA------ACTT-TA-----GTAATATACTCGTAACAAT--CCC---TAAAA--AGCTCGTAAAA-TG-TAATTAA-------------TT-GGT-C---ATATTCTT-TA-A-A-GTGTCTAAA----TCG--TAATAA-TCCGT----GTACTTTTACTGGTT-----TGTGG-----AATAAAT---AAGAAT------AC-----G-TA---------------------AGAAA
gi|8 : CCCCCTTCACACTCT-CG-GATTTTTC-TTGCG-AGTCCTT-ACGGA-TCTCCGA--CT-CGTAGTCAtatataggaatgtgaa
gi|8 : taCCGTAAA---TCAC-TCG-TAA--CAATCC---GCAACAA--TCGTA--AA---C-TGGTC-G-CAA-GA-ACA-C--G----TA-A--ACTG--CTCCTA--A--GAA-TCCG--TA-A-AACACT---TCAAAAATGTTTTTTAA--CGAAT-C----------------T-A-CGAT-AT--GT-TACAGATAATT----TACGAG-T--TGTTTACGTATTA------ATGGACATTTTC-GGC--------TGG----GTGAACA------TTTAC-----nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnataacccgtaaatcactcgtaacaatccgcaacaatcgtaaactggtcgcaagaacacgtaaactgctcctaagaatccgtaaaacacttcaaaaatgttttttaacgaatctacgatatgttacagataatttacgagttgtttacgtattaatggacattttcggctgggtgaacatttaca
gi|9 : tacccccttcacactctcggatttttcttgcgagtccttacggatctccgactcgtagtcannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnataacGTA-TCGTAACAAT--CCC---TTTAA--GCTTCGTAAAC-TG-TCGTAA--------------TT-GCTTC---GTA---TT-TATT-C-GT-T-TCACG---TCG--AAGAAA-TTCGT----AA--T-------G-T-----CGCCGT----AATGCATTGC-AGAAT------TC-----GTTA---------------------ATAATTTTGCGTAA-ATGGGTTC-TGTATAA-TACCGTGGCTTAAA--------TAAAT--CTTTTTAACAGGT-TCT-AATCGTAACAAATCCA-TATAATAACTTATTACG-----G-TAG--AT-CGT-AA---------------AAA-AAAAACC-TGAATGTGAa
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|20 ): GATTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
Unaligned ( gi|24 ): AATTTCCATGACTTCCGAGCTTTGTCGAAAAAATAAAAATCGGATTAGTTCTACAGCAATGAAATGCTAAAACTACAA
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 111 1111111111111 222222 11111111 222222 11111 11111 1 333333333333 11 22222 3333333333333333333333333 1111 1111111 1111111 2222222222222222222222222222222 111 111111111111111 11111111 11111111 11111 111111 11111 2222222222222 11111 1111 111 1111 222222222 11111 4444444444444444444444444444444444444444 111 11111111 111111 1111111111
lowQualScore : 4 4 2 3 3 3 3 3 55 3 7777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 777 4 3 55 88888888 55 55 000 3 3 3 7 4 4 55 8888 4 55 2 55 0 99999 3 55 7 3 4 1111111111111 4 4 666 4 4 4 66 4 0 9999 4 55 1 99999 555555 4 66666666 9999 8 333333 11111 5 22222 2 66 5 66 5 888 88 5 5 55 0 333333333333 66 11 0 66 9999 44 777 00000 7 66 66 4 1111111111111111111111111 666 1111 7 3 3 3 3 666 3 1111111 666 1111111 3 5 99999 7777 3 7777777777777777777777777777777 666 88888 55 111 999999999999999 55 99999 4 0 4 66666666 4 8 4 55 66666666 11111 66 4 222222 5 33333 0 66 777 66 0 0 4 4 4444444444444 4 4 777 777 5 77777 5 5 5555 111 5 0000 777777777 22222 0 777 0 0000000000000000000000000000000000000000 9999 5 000 5 5 5 9999 2 4 4 66666666 11 0 3 3 3 0 3 3 8888 3 7777 7 3 1 3 99999 3 666666 5555555555 0
lowQualScore : . . . . . . . . .. . ............................................................................................................................... ... . . .. ........ .. .. ... . . . . . . .. .... . .. . .. . ..... . .. . . . ............. . . ... . . . .. . . .... . .. . ..... ...... . ........ .... . ...... ..... . ..... . .. . .. . ... .. . . .. . ............ .. .. . .. .... .. ... ..... . .. .. . ......................... ... .... . . . . . ... . ....... ... ....... . . ..... .... . ............................... ... ..... .. ... ............... .. ..... . . . ........ . . . .. ........ ..... .. . ...... . ..... . .. ... .. . . . . ............. . . ... ... . ..... . . .... ... . .... ......... ..... . ... . ........................................ .... . ... . . . .... . . . ........ .. . . . . . . . .... . .... . . . . ..... . ...... .......... .
lowQualScore : 0 0 1 6 6 6 6 6 00 6 0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 000 0 6 00 33333333 00 00 000 6 6 6 3 0 0 55 5555 0 55 3 55 3 55555 6 00 3 6 0 3333333333333 4 4 999 4 4 4 11 4 7 4444 0 55 0 33333 666666 4 11111111 4444 9 999999 11111 0 55555 0 99 0 99 0 888 66 0 0 22 0 111111111111 66 66 7 11 4444 66 888 66666 4 11 11 4 4444444444444444444444444 444 4444 3 6 6 6 6 444 6 8888888 444 8888888 6 1 11111 7777 6 2222222222222222222222222222222 444 77777 00 444 888888888888888 00 11111 0 7 0 11111111 4 9 4 55 11111111 11111 11 4 888888 0 11111 1 11 888 11 1 8 4 4 4444444444444 4 4 888 888 0 44444 6 0 6666 000 0 6666 666666666 55555 2 888 9 9999999999999999999999999999999999999999 0000 0 222 0 0 0 4444 0 4 4 22222222 55 5 6 6 6 4 6 6 5555 6 7777 3 6 2 6 11111 6 888888 9999999999 7
consensus : CCCCCTTCACACTCA-CG-GATTTTTC-TTACG-AGTCCTT-ACGG-A-TCTC--CGACT-CGTAGTCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTTCCGTAAA---TCAC-TCG-TAA--CAATCC---GTAACTA--TCGTA--AA---C-TGGTC-G-CAA-GA-ACA-C--G----TA-A--ACTG--CTCTTA--A--GAA-TCCG--TA-A-AACACT-CGTAAAAAACGTTTTTAAA--CGAAT-CTTTGC-GGT--TAGTTT-A-CGAT-AT--GT-TACGGATAATT----TACGAG-T--TGTTTACGNATTAT--T--ACGAA------C-GCC--------TAA----GTG-ATA------TTTAC-----GAT-TTCA-----TTCGCG--TCGGATT-A--CAATCGCTTT-ACGGAT---TGTT-C-AGAGTCATT-AAGA-GC-ACTTTAC--GTA-A---TATAGACACGATTACTTTACGAGTACTTTTGGGC--TAGTGAAAGGAG----CAGTT-GT---A-----GAAATTGCTGAT--ACAA--TTTT-AATCTGTACCATTC-----------T-GTTCCA-AGTAA---TG----TCA-GTT-G-TCGA-A-TGA---TTA-T-------GC---AT-------AGCCAATTTCGAACACTTTTG-AGTCAAA-----AA----CGTA-CAC-------AA--------TC------------G---TAACTAACTCCCG----AC--TA---TTCGTAACAG--------------CA--CGTT-----ATC-AACACGT-TAAC--------AGGT-CGTGATGTAC-ACGTA-AA--AGC--------TAA-----GGTA--AAT-CGTA------ACTT-TC-C---GTAAAGTACTCGTAATAAT--CCC---TAAAA--AGCTCGTAAAA-TG-TCGTAAA-------------TT-GCT-C---GTA---TT-TA-T-C-GTGT-TCAC----TCG--AAACAA-ATCGT----AAATT-------GTT-----CGCCGCA---AATACATCGCAAGAAC------TC-----G-TA---------------------ATAAAC---CGTAA-ATGG--CC-CGTA-AA-TACT----CTTA-AAT-CGTT---CTTAAATAGCTCTTTAA-AGTG-TC-TGAATCGTAAC-AATCCG-TGT----ACTT-TTACGGAT----TTG-TAG-AATACGT-AAG-----GAT-CCGT------AA----------GAAAAATCCGTGAGTGTGA
Reference ( family-971 ) : CCCCCTTCACACTCA-CG-GATTTTTC-TTACG-AGTCCTT-ACGG-A-TCTC--CGACT-CGTAGTCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTTCCGTAAA---TCAC-TCG-TAA--CAATCC---GTAACTA--TCGTA--AA---C-TGGTC-G-CAA-GA-ACA-C--G----TA-A--ACTG--CTCTTA--A--GAA-TCCG--TA-A-AACACT-CGTAAAAAACGTTTTTAAA--CGAAT-CTTTGC-GGT--TAGTTT-A-CGAT-AT--GT-TACGGATAATT----TACGAG-T--TGTTTACGNATTAT--T--ACGAA------C-GCC--------TAA----GTG-ATA------TTTAC-----GAT-TTCA-----TTCGCG--TCGGATT-A--CAATCGCTTT-ACGGAT---TGTT-C-AGAGTCATT-AAGA-GC-ACTTTAC--GTA-A---TATAGACACGATTACTTTACGAGTACTTTTGGGC--TAGTGAAAGGAG----CAGTT-GT---A-----GAAATTGCTGAT--ACAA--TTTT-AATCTGTACCATTC-----------T-GTTCCA-AGTAA---TG----TCA-GTT-G-TCGA-A-TGA---TTA-T-------GC---AT-------AGCCAATTTCGAACACTTTTG-AGTCAAA-----AA----CGTA-CAC-------AA--------TC------------G---TAACTAACTCCCG----AC--TA---TTCGTAACAG--------------CA--CGTT-----ATC-AACACGT-TAAC--------AGGT-CGTGATGTAC-ACGTA-AA--AGC--------TAA-----GGTA--AAT-CGTA------ACTT-TC-C---GTAAAGTACTCGTAATAAT--CCC---TAAAA--AGCTCGTAAAA-TG-TCGTAAA-------------TT-GCT-C---GTA---TT-TA-T-C-GTGT-TCAC----TCG--AAACAA-ATCGT----AAATT-------GTT-----CGCCGCA---AATACATCGCAAGAAC------TC-----G-TA---------------------ATAAAC---CGTAA-ATGG--CC-CGTA-AA-TACT----CTTA-AAT-CGTT---CTTAAATAGCTCTTTAA-AGTG-TC-TGAATCGTAAC-AATCCG-TGT----ACTT-TTACGGAT----TTG-TAG-AATACGT-AAG-----GAT-CCGT------AA----------GAAAAATCCGTGAGTGTGA
gi|1 : TTTTTC-TTACGTAGTCCTT-ACGGAA-TCTCAGAGACT-CGTAGTCA
gi|1 : CG-TAA--C----C---GTAACTA--TCGTA--AAACTT-TGGTC-G-CAA-AA-TCATC--GGGTATA-A--AC----CTGTAACGA--AAA-TCCG--TATA-AACACTTCGTAAAACGCG-----------AAAT-CTTTGCTGGTCTTAGTTTTA-CGAT-ATTAATATACGGATAACTCCCTTACGAGGT--TGTTTACGGACAAT-----ACGAAAACTGCT-GCTATAAAATATAA----GTG-ATAATCCT-TCCACCCTCGGGTGTTCACCTATTTTTCG--T---AT--A--AAATCGCTTT-ACGGATAACTGTAAC-AGAGTTATTTAAGATGCCACTTT-----TA-ACTCTATAGACACGATTAC---------ATTTCCCGGCAATAGTGAAAAGAGAACGCAGTTAGT---AACAATGAAA---CTTATCCACAAGATTTT-AATCTGTG--AGGC-----------C-GAT----GGTAAATGTGGTTCTTA-GTTTG-TCGA-A-TGACATTTACT-------GCCGTAT-------AGCCAATT-CGGACACTGTTGTAGTTAAA-----AA----AATAATACTT-----AACACCCATTTC------------GAAATAACTAACTCCGGTGAAAC--TACATTTAATAACAGTAACACCAAGAAAACA--CGTTTAACTATC-AACACTG-CAAC--------AGGTACGTGATGTACAACGTAGAA--AGCATAGATATTAATACAGGGTATGAGTGCGTAAACTCCATTT-TC-CGTGGTAAAGTACTC-CAATAATTCTCC---TAAGATGAACCCGTAAAATTG-TTCTAAAATATGGATTAAGGTT-GCT-CATAATA---TTGTAGT-C-GTGT-TCACTACTTCAACAAACAA-ATCGTGGAGAAATT-------GTTTAGTGCTCCGCACCCAATACATCGCAAGAACCTTACATC-----G-TAGTATCACCGTGAGAACTCGTAATAAAC---CGTAA-ATGG--CC-CGTA-CA-TGCT----CATA-AAT-CA------CTAAGTAGGTCTTTAA-AGTG-TC-TGAATTGTAAC-TACCCG-TGT----ACTT-TTACGGAT----TTG-TAG-AATACTT-TAG-----GAT-CCGT------AA----------GAAAatcgcaaacagtacgctattttcgtaaatcagctggtcgtcggatagaatcgttaagtagtcctcttcagtgcatgtctcggcacacagctgcgttcaggacagtgctctgtgaaaggttgggagacatcctgatatctatatttaaatagagcatgtcaaccaacttaatggtttttacgaagctctgtccacggatttcgtgtcccatcccgttaaattaccccgatttaaacctcaacgtaaccgtaactatcgtaaaactttggtcgcaaaatcatcgggtataaacctgtaacgaaaatccgtataaacacttcgtaaaacgcgaaatctttgctggtcttagttttacgatattaatatacggataactcccttacgaggttgtttacggacaatacgaaaactgctgctataaaatataagtgataatccttccaccctcgggtgttcacctatttttcgtataaaatcgctttacggataactgtaacagagttatttaagatgccacttttaactctatagacacgattacatttcccggcaatagtgaaaagagaacgcagttagtaacaatgaaacttatccacaagattttaatctgtgaggccgatggtaaatgtggttcttagtttgtcgaatgacatttactgccgtatagccaattcggacactgttgtagttaaaaaaataatacttaacacccatttcgaaataactaactccggtgaaactacatttaataacagtaacaccaagaaaacacgtttaactatcaacactgcaacaggtacgtgatgtacaacgtagaaagcatagatattaatacagggtatgagtgcgtaaactccattttccgtggtaaagtactccaataattctcctaagatgaacccgtaaaattgttctaaaatatggattaaggttgctcataatattgtagtcgtgttcactacttcaacaaacaaatcgtggagaaattgtttagtgctccgcacccaatacatcgcaagaaccttacatcgtagtatcaccgtgagaactcgtaataaaccgtaaatggcccgtacatgctcataaatcactaagtaggtctttaaagtgtctgaattgtaactacccgtgtacttttacggatttgtagaatactttaggatccgtaagaaa
gi|10 : tttttcttacgtagtccttacggaatctcagagactcgtagtcaatcgcaaacagtacgctattttcgtaaatcagctggtcgtcggatagaatcgttaagtagtcctcttcagtgcatgtctcggcacacagctgcgttcaggacagtgctctgtgaaaggttgggagacatcctgatatctatatttaaatagagcatgtcaaccaacttaatggtttttacgaagctctgtccacggatttcgtgtcccatcccgttaaattaccccgatttaaacctcaaCCCCCTTCACACTCA-CA-AAT---------------CCTT-ACGG-A-TCTC--CGACT-CGTAGTCA
gi|10 : ataA-TCTGATTG-A-AACA----GTAAAAAAAATGT----A--CGAGT-GTGTGC-GAT--CTGT------GAT-GA--GT-TACGGAT-ACC----GACGAG-T--GATTTACGAATACT--T--GCGAatcgcaagtattcgtaaatcactcgtcggtatccgtaactcatcacagatcgcacacactcgtacattttttttactgtttcaatcagataccgtgccatgtaaagcgtaaattctgagcccaaccgtgaattttttgacatgtcaattttttttttatgattgtccacggatttcgttttccgtaaatcactcgtaacaatctgtaactatcgtaaactggtcgcaagaacacgtaaacactgctcttatgaatccgtaaaacactcgtaaaaagtg
gi|10 : atacccccttcacactcacaaatccttacggatctccgactcgtagtcaaTTTTCCGTAAA---TCAC-TCG-TAA--CAATCT---GTAACTA--TCGTA--AA---C-TGGTC-G-CAA-GA-ACA-C--G----TA-AACACTG--CTCTTA--T--GAA-TCCG--TA-A-AACACT-CGTAAAAAaccgtgccatgtaaagcgtaaattctgagcccaaccgtgaattttttgacatgtcaattttttttttatgattgtccacggatttcgttttccgtaaatcactcgtaacaatctgtaactatcgtaaactggtcgcaagaacacgtaaacactgctcttatgaatccgtaaaacactcgtaaaaagtg
gi|11 : atacccccttcacactcacaaatccttacggatctccgactcgtagtcaatcgcaagtattcgtaaatcactcgtcggtatccgtaactcatcacagatcgcacacactcgtacattttttttactgtttcaatcagataccgtgccatgtaaagcgtaaattctgagcccaaccgtgaattttttgacatgtcaattttttttttatgattgtccacggatttcgCGAG-T--TGTTTACATACTAT--T--ACGAA------C-GCC--------TAA----GTG-ATA------TTTAC-----GAT-TTCA-----TTTGCG--TCGGATT-A--CAATCGCTTT-ACGGAT---TGTT-C-AGAGTCATT-AAGA-GC-ACTTTAC--GTA-----TATA--CACGATTACTTTACGAGTA-TTTTGGGC--TAGTGAAAGGAG----CAGTT-GT---A-----GAAATTGCTGAT--AAAA--TTTT-AATATGTACCTGTC-----------T-GTTCTA-AGTAA---TG----TCA-GTT-G-TCGA-A-TGA---TTA-T-------GC---AT-------AGCCAATTTCGAACACTTTTG-AATCAAA-----AG----CGCA-CAC-------AA--------TC------------G---TAACTAAC-CCCA----AC--TC---TTCGTAACAG--------------CA--CGTT-----ATC-AACACGT-TAAgtg
gi|12 : TTTTCCGTAAA---TAAT-TTACTAA--AAA-CT---TT--CTT--TCAT------------GTC-T-TAA-TA-AC-----G----TA-A--ACTG--CTCGTA--AAAGAA-TCCG--TT-TTAACATT-AGTAAAA--CTTTTTTAAAAACAAAG---TTAC-GGT--TA-CTT-ATCAATTAT--GT-TGCA-ATAGTT----TACGTG-T--TATATACAGATTAT--TTAAC-AA------T-GCG--------TAG----GTG-ATA------TTTAC-----GAT-TACA------TCAAG--TCGGG-T-AGCCAACAGTCTC-ACGGAT---TGT----ATAGTCACT-AA
gi|13 : cgtaaaggttccggaaagtggtgaacattttttacgatgtcaaaaaatcaacgattgtccaacggattttaCTTT-----TA-A---TATAGACACGATTACTT-ACGAGTACACTGTGGC--TAGTAAAAGGAG----CAGTT-AT---AAAAG-GAAA-TGCTGAT--ACAA--TTTT-AACCTGTACCTCTCATATGCCACGGT-GCTCTA-AGTAA---TG----CCA-GTT-G-TCGA-A-TTA---TTA-T-------AC---AT-------AGCCAATTTCAAATACTTTTG-AGT-ATA-----AA----CATA-TAT-------AA--------TC------------G---TAACTAACTCCCG----AA--TA---TTCGTAACAG--------------CA--CG-------------------TAAC--------AGCT-CGTAATTTAC-ACGTA-AA--AGT--------TAG-----GATA--AAT-CGTA------A
gi|14 : g--AGC--------TAT-----GCTA--AGT-CGTA------ACTT----A---GTAATGTACTCGTAACAAT--CCC---TATAA--AGCTCGTAAAC-TG-TCGTAAA-------------TT-GCT-C---GTA---TT-TATT-C-GTTT-TCAC----TCG--AAAGAA-ATCGT----AAA-T-------GTT-----CGCCGTA---AATGCATTGCAAGAAC------TC-----G-TA---------------------ATAAAT---CGTAA-ATGG--TC-TGTA-AA-TACT----C--------CGTT---CTTAAATAACTTTTTAA-AGTG-TC-TAAATCGTAAC-AATCCA-TGT----ACTT-TTACGGA-------------------T-AAG-----GAT-TCGTAAA---AA----------AAAAAATCCGTGAtnnnnnnnnnnnnnnnnnnnnnnnnncct
gi|15 : CCCCCTTCACATTCA-CG-GATTTTTC-TAACG-AGTCCTT-ACGG-A-TCTC--CGACT-CGTAGACAa
gi|15 : CCGTAAA---TCAT-TCG-TAA--CAAACC---GTAACTA--TCGTA--AA---C-TGGTC-G-CAA-Gnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaacatttttatgattgtcgaatttaacccgtaaatcattcgtaacaaaccgtaactatcgtaaactggtcgcaag
gi|16 : cccccttcacattcacggatttttctaacgagtccttacggatctccgactcgtagacannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaacatttttatgattgtcgaatttaacTACCATGC-----------T-GTTCCA-AGTAA---TG----CCA-GTT-G-TCAA-A-TGA---TTA-T-------AC---ATTGTACATGGCCAATTTCGAACACTTTTG-AGTCAAA-----AA----TGTA-AAC-------TA--------TCGTGCATGTACATG---TAACTAACTCCCG----AC--TA---TTCTTAACAG--------------TA--CGTT-----AT---ACATGTATAACCATGTAAAAGAT-CGTGATTTAC-GCTTA-AA--A
gi|17 : aA---AATGCTTTGCAAGAA-------TCAAGTAG-CA---------------------ATAAAC---CTTAA-ATGG--CCTCATA-T--TGCT----CGTA-AATACACT------AAACA-TTATTTAA-AGTG-TC-TAAATCGTAAC-AATCCGATGT----ACGT-ATACTGAT----TTG-AAGTAATGCGT-AAA-----GAT-TCGTCAGAAAAA----------GAAAAATCC-TGAGTGT
gi|18 : atgctaaccttTAA---TG-----CATGTT-G-TCAAGA-TGA---TTA-TTCATTTGAC---AT-------GGCCAATTTCGA-CACTTTTG-AGTCAAATGATTAACTATCGTG-CAT-------GT--------CT------------G---TAACTAATTCCCG----ACTTTA---TTT-TAAC----------------TA--CGTT-----
gi|19 : gcgttcatagtCCACCTTCATACACA-CG-GATTTT-C-TTACG-AGTCATT-TCGG-ATTTTC--CGACT-CGAAGTCAcatgtttaccttgttatata
gi|2 : aCCCCCTTCACACTCA-CG-GATTTTTC-TTACG-AGTCCTT-ACGG-A-TCTC--CGACT-CGTAGTCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTTCCGTAAA---TCAC-TCG-TAA--CAATCT---GTAACTA--TCGTA--AA---C-TTGTT-G-CAA-GA-ACA-C--G----TA-A--ACTG--CTCTTA--A--GAA-ACCG--TA-A-AACACT-CGTAAAAAATGTTTTTAAA--CGAAT-CTTTGC-GGT--TAGTTT-A-CGAT-AT--GT-TACAGATAATT----TACGAG-T--TGTTTACGTATTAT--T--ACGAA------C-GCC--------TAT----GTG-ATA------TT-AC-----GAT-TTCA-----TTTGTG--TCGGATT-A--CAGTCGCTTT-A-GGAT---TGTT-C-AGAGTCATT-AAGA-GC-ACTTTACATGTACG---TATAGACACGATTACTTTACGAGTATTTTTGGGC--TAGTGAAAGGAG----CAGTT-GT---A-----GAAATTGCTGAT--GCAA--TTTT-AATCTGTACCATTC-----------T-GTTTCA-AGTAA---TG----TCA-GTT-G-TCGA-A-TGA---TTA-T-------GC---AT-------AGCCAATTTCGAACACTTTTG-AGTCAAA-----AA----CGCA-CAC-------AA--------TC------------G---TAACTAACTCTCA----AC--TA---TTCGTAACAG---------------A--CGTT-----ATC-AACACGT-TAAC--------AGGT-CGTGATGTAC-ACGTA-AA--AGC--------TAA-----GGTA--AAT-CGTA------ACTT-TC-C---GTAAAGTACTCGTAATAAT--CCC---TAAAA--ATCTCGTAAAA-TG-TCGTAAA-------------TT-GTT-C---GTA---TT-TA-T-C-GTGT-TCAC----TCG--AAACAA-ATCGT----AAATT-------GTT-----TGCCGCA---AATACATCGCAAGAAC------TT-----G-TG---------------------ATAAAA---CGTAA-ATGG--CC-CGTA-AA-TACT----CTTA-AAT-CATT---CTTAAATAGCTCTTAAA-TGTG-TC-TGAATCGTAGC-AATCCG-TGT----ACTT-TTACGGAT----TTG-TAG-AATACGT-AAG-----GAT-CCGT------AA----------G-AAAATCCATGAGTGTGAaatcaagccggtaaatatctcgtcgactagtgttttatactttcatttgccacgactcgcagcaccactcgtaag
gi|21 : CCCTCTTCATACTCA-TG-GATTTTTC-GTACT-AGTAATT-ACGG-A-TCTC--CGACT-CGTAGTCA
gi|21 : taT-TTACGAATGCTTTTGATTG-ACTACG---AGTCGGAGAT-CCGT------AATTACTAGTACGAAAAATCCATGAGTATGAatcaaaagcattcgtaaatcactcgtcgg
gi|22 : taccctctTCTTTAG-AGTG-TC-TAAATCGTAAC-AATCCG-TGT----ACTT-TTACTGGT----TTG-TGG-AATACAT-AAG-----AAT-ACGT------AA----------GAAAAATATGGGAATGtcactcgtcgg
gi|23 : TAGTTCTTAAA-AGTG-TG-TAAATCGTAAC-AATTCG-TGT----ACTT-TTACGGAT----TTG-TGG-AATACGT-AAG-----GAT-CCGT------AA----------ACAAAATCCGT
gi|25 : TTCACACTCA-AG-AATTTT-C-TTAAG-AGTCGTT-ATTG-A-TCTC--CGATT-CGTAGTCA
gi|26 : accacaG--------------CA--CGTT-----ATC-AACACGT-TAAC--------AGGT-CGGTATGTAC-ACGTA-AA--AGC--------TAA-----GGTA--AAT-CGTA------atttgcaagcatt
gi|3 : CCCCCTTCACA-TCA-CG-GATTTTTC-TAACG-AGTCCTTAACGG-A-TCTC--CGACTCCGTAG
gi|3 : cATT----TTTAGAAT-TGTCGAATTTAAAC-GCCCGGTAA-AGTG-TCATG--TCGTAAC-AAGCCG-Tgacatccgcaaagcaattcgtgcaaatactctcggaatccgttagacaactcgcacagctcgccaactcgaaggaatgtcaaaaaacaatttttagaattgtcgaatttaaacgcccggtaaagtgtcatgtcgtaacaagccgtaactaaaccgtaaaactgtcgacaaagagacacgtacagccgtactcctaagaaatccgtagaacactcgtaaaaaattattttaaacgaattctttgcggtagtttacgatatgttacagataatttacgcaccgtgtttacgtattattacgaacggcctaagtgcatatttacgatttcatttgcggtccggattaacaatcgctttggcggattgttcaagagtcattaaagacaactttacgtaagacacgatactgttcgagtattgtgggctgtgaaagggcagttgtagaatgctgatacaattttaaatctgtaccattctggttccatagtaatgttcagttgtcgaatgatatgcatagccattcgacactttgagtgaaaaacgcacacacgtaactaactccactaattccgtaacagcacgcgtaatcaaacacgtttacaggtcatgatgtacaacgtaaaacagctaaggtaatcgcaacttatcgcgtaaataccgtaataatccctaaagcgcgtaaaatgttcgtaaatggctcatatgtatccgtttcactcggacaacatcgtaaatgtgtgcgcaaatacatcgcaagaatcgtaataaaccgtaacatggccgtaaactactcttaaatcactctaaatagctcttaaaagtgttctgaatcgtagtaaccggtgtacttttacggatttattagaatacgtgaaggataacgtaagaaaaatccgcagtgtga
gi|3 : ccccccttcacatcacggatttttctaacgagtccttaacggatctccgactccgtaggacatccgcaaagcaattcgtgcaaatactctcggaatccgttagacaactcgcacagctcgccaactcgaaggaatgtcaaaaaacaGTAAAGTGTCATGTCG-TAA--CAAGCC---GTAACTAAACCGTA--AAA--C-TG-TC-GACAAAGAGACA-C--G----TACA--GCCGTACTCCTA--A--GAAATCCG--TA-G-AACACT-CGTAAAAAATTATTTTAAA--CGAATTCTTTGC-GGT---AGTTT-A-CGAT-AT--GT-TACAGATAATT----TACGCA-CCGTGTTTACGTATTAT--T--ACGAA------CGGCC--------TAA----GTGCATA------TTTAC-----GAT-TTCA-----TTTGCGGTCCGGATTAA--CAATCGCTTTGGCGGAT---TGTT-CAAGAGTCATT-AAAG-ACAACTTTAC--GTA--------AGACACGA-TACTGTTCGAGTA-TTGTGGGC--T-GTGAAAGG-G----CAGTT-GT---A-----GAA--TGCTGAT--ACAA--TTTTAAATCTGTACCATTC-----------TGGTTCCATAGTAA---TGT---TCA-GTT-G-TCGA-A-TGA----TA-T-------GC---AT-------AGCCA--TTCG-ACAC-TTTG-AGTGAAA-----AA----CGCA-CAC-------A----------C------------G---TAACTAACTCC------AC--TAAT-TCCGTAACAG--------------CACGCGTA-----ATCAAACACGT-TTAC--------AGGT-CATGATGTACAACGTA-AAACAGC--------TAA-----GGT---AAT-CGCA------ACTTATCGC---GTAAA-TAC-CGTAATAAT--CCC---T--AA--AGCGCGTAAAA-TGTTCGTAAA-------------TG-GCT-C---ATA---TG-TA-TCC-GT-T-TCAC----TCG---GACAACATCGT----AAA-T-------GTG-----TG-CGCA---AATACATCGCAAGAA-------TC-----G-TA---------------------ATAAAC---CGTAACATGG---C-CGTA-AACTACT----CTTA-AAT-CACT---C-TAAATAGCTCTTAAA-AGTGTTC-TGAATCGTAGT-AACCGG-TGT----ACTT-TTACGGAT----TTATTAG-AATACGTGAAG-----GATAACGT------AA----------GAAAAATCCGC-AGTGTGAaactaaaccgtaaaactgtcgacaaagagacacgtacagccgtactcctaagaaatccgtagaacactcgtaaaaaattattttaaacgaattctttgcggtagtttacgatatgttacagataatttacgcaccgtgtttacgtattattacgaacggcctaagtgcatatttacgatttcatttgcggtccggattaacaatcgctttggcggattgttcaagagtcattaaagacaactttacgtaagacacgatactgttcgagtattgtgggctgtgaaagggcagttgtagaatgctgatacaattttaaatctgtaccattctggttccatagtaatgttcagttgtcgaatgatatgcatagccattcgacactttgagtgaaaaacgcacacacgtaactaactccactaattccgtaacagcacgcgtaatcaaacacgtttacaggtcatgatgtacaacgtaaaacagctaaggtaatcgcaacttatcgcgtaaataccgtaataatccctaaagcgcgtaaaatgttcgtaaatggctcatatgtatccgtttcactcggacaacatcgtaaatgtgtgcgcaaatacatcgcaagaatcgtaataaaccgtaacatggccgtaaactactcttaaatcactctaaatagctcttaaaagtgttctgaatcgtagtaaccggtgtacttttacggatttattagaatacgtgaaggataacgtaagaaaaatccgcagtgtga
gi|4 : ccccccttcacatcacggatttttctaacgagtccttaacggatctccgactccgtaggacatccgcaaagcaattcgtgcaaatactctcggaatccgttagacaactcgcacagctcgccaactcgaaggaatgtcaaaaaacaatttttagaattgtcgaatttaaacgcccgCCCCCTTCACACTCA-CA-GATTTTTC-TTATG-AGTCCTT-ACGG-A-TCTC--CAACT-CATAGTCA
gi|4 : aGTAAA---TCAC-TCG---------TCG---GTATCCA--T--TAATAA---C-TCGTC-A-C----A-ACT-C--G----CA-C--AC-A--CTCGTA--A--GGA-TCCA--TG-A-AAatcgcaggcatttgtaaatcactcgtcggtatccattaataactcgtcacaactcgcacacactcgtaaggatccatgaaagttgggctaaatttcttgacatgtcaaaaaaaaattatgattgtccacaaattttattttccgtaaatcactcgtaactatcataaactggttgcaagaacacgtaaactgctcttaagaattcgtaaaacactcgtaaaaaaaattttttaacgaatctttgcagttagtttacgatttgttagagatagttttcgagttgtttacagatcattgcgaatgcctaagtgatatttacgatctctttcacatcgggttacgatcgctttacagattgttcagagttattaagagcacttcaagtatagacatgattactttacgagtacatttgggctagtgaaaggagcagttttagaaattgctgatacaattttaatctgtaccatgctgttccaagtaatgtcagttgttgaatgattatacatagccaatttcgaacacttttgagtcaaaaacgtaaacaatcgtaattaactcccaactattcataacagcatgttatcaacatgttaacatgttgtgatgtacacgtaaaaactaaggtaaattgtaactttccgtaaagtactcgtaataatccctaaaagctcgtaaaatgtcataaattgttcataattatccgtgttcactcggaacaaatcgtaaatgtttaccgcaaatacatcgcaagaactcatagtaaatactcttaaatcattcttaaatagctctttaaagtggctgaatcgtaacaatctgtgtacttttacggattcatagaatccgtaagaaaaatctgtgag
gi|4 : acccccttcacactcacagatttttcttatgagtccttacggatctccaactcatagtcaatcgcaggcatttTTTTCCGTAAA---TCAC-TCG-TAA--C-------------TA--TCATA--AA---C-TGGTT-G-CAA-GA-ACA-C--G----TA-A--ACTG--CTCTTA--A--GAA-TTCG--TA-A-AACACT-CGTAAAAAAAATTTTTTAA--CGAAT-CTTTGC-AGT--TAGTTT-A-CGAT-TT--GT-TAGAGATAGTT----TTCGAG-T--TGTTTACAGATCAT--T--GCGAA------T-GCC--------TAA----GTG-ATA------TTTAC-----GAT-CTCT-----TTCACA--TCGGGTT-A--CGATCGCTTT-ACAGAT---TGTT-C-AGAGTTATT-AAGA-GC-ACTTCA-----A-G---TATAGACATGATTACTTTACGAGTACATTTGGGC--TAGTGAAAGGAG----CAGTT-TT---A-----GAAATTGCTGAT--ACAA--TTTT-AATCTGTACCATGC-----------T-GTTCCA-AGTAA---TG----TCA-GTT-G-TTGA-A-TGA---TTA-T-------AC---AT-------AGCCAATTTCGAACACTTTTG-AGTCAAA-----AA----CGTA-AAC-------AA--------TC------------G---TAATTAACTCCCA----AC--TA---TTCATAACAG--------------CA--TGTT-----ATC-AACATGT-TAAC--------ATGT-TGTGATGTAC-ACGTA-AA--AAC--------TAA-----GGTA--AAT-TGTA------ACTT-TC-C---GTAAAGTACTCGTAATAAT--CCC---TAAAA---GCTCGTAAAA-TG-TCATAAA-------------TT-GTT-C---ATA---AT-TA-T-CCGTGT-TCAC----TCG--GAACAA-ATCGT----AAAT--------GTT-----TACCGCA---AATACATCGCAAGAAC------TC-----A-TA----------------------------------------------GTA-AA-TACT----CTTA-AAT-CATT---CTTAAATAGCTCTTTAA-AGTG-GC-TGAATCGTAAC-AATCTG-TGT----ACTT-TTACGGAT----TCA-TAG-A----------------AT-CCGT------AA----------GAAAAATCTGTGAGgttgggctaaatttcttgacatgtcaaaaaaaaattatgattgtccacaaattttattttccgtaaatcactcgtaactatcataaactggttgcaagaacacgtaaactgctcttaagaattcgtaaaacactcgtaaaaaaaattttttaacgaatctttgcagttagtttacgatttgttagagatagttttcgagttgtttacagatcattgcgaatgcctaagtgatatttacgatctctttcacatcgggttacgatcgctttacagattgttcagagttattaagagcacttcaagtatagacatgattactttacgagtacatttgggctagtgaaaggagcagttttagaaattgctgatacaattttaatctgtaccatgctgttccaagtaatgtcagttgttgaatgattatacatagccaatttcgaacacttttgagtcaaaaacgtaaacaatcgtaattaactcccaactattcataacagcatgttatcaacatgttaacatgttgtgatgtacacgtaaaaactaaggtaaattgtaactttccgtaaagtactcgtaataatccctaaaagctcgtaaaatgtcataaattgttcataattatccgtgttcactcggaacaaatcgtaaatgtttaccgcaaatacatcgcaagaactcatagtaaatactcttaaatcattcttaaatagctctttaaagtggctgaatcgtaacaatctgtgtacttttacggattcatagaatccgtaagaaaaatctgtgag
gi|5 : acccccttcacactcacagatttttcttatgagtccttacggatctccaactcatagtcaatcgcaggcatttgtaaatcactcgtcggtatccattaataactcgtcacaactcgcacacactcgtaaggatccatgaaagttgggctaaatttcttgacatgtcaaaaaaaaattatgattgtccacaaattttaTT-TC-C---GTAAATAATCCGTA--AAT--CACTTGTAACA--ATC-CGT-AAC-TA-TCGTAAA-------------CT-GGT-C---GTA---
gi|5 : ttgtccacggatttcctTCCGTAAA---TCAC-TTG-TAA--CAATCC---GTAACTA--TCGTA--AA---C-TGGTC-G-TAA-GA-ACA-C--G----TA-A--ACTG--CTCTTA--A--GAA-TCCG--TA-A-AACACT-CGTAAAAA-TGTTTTTAAA--CGAAT-CTTTGC-GGT--TAGTTT-A-CGAT-AT--GT-TACAGAAAATT----TACGAG-T--TGTTGACGTATTATATT--ACGAA------C-GCC--------TAA----GTG-ATAGATCTATTTAC-----GAT-TTCA-----TTTGCG--TCGGATT-A--CAATCGTTTT-ACGGAT---TGTT-C-AGAGTCATT-AAGA-AC-ACTT-AC--GTA-------TAGACACGATTACTTTACGAGTATTTTTGGGC--TAGTAAAAGGAG----CAGTT-GT---A-----GAAATTGCTGAT--ACAA--TTTT-AATCTGTTCCAT-----------------------GCAA---TG----TCA-GTT-G-TCGA-A-TGA---TT--T-------GC---AT-------AGCCAATTTCGAACACTTTTG-AGTCAAA-----AA----CGCA-CAC-------AA--------TC------------G---TAACTAAC-CCCA----AC--TA---TTCGCAACAG--------------TA--CGTT-----ATC-AATACGT-TAAC--------AGGT-CGTGATGTAC-ACGTA-AA--AGC--------TAA-----GATA--AAT-CGTA------A-TT-TC-C---GTAAAGTACTCGTAATAAT--CCC---TAAAA--AGCTCGTAAAA-TG-TCGTAAA-------------TTCGCT-C---GCA---TT-TA-T-CCGTGT-TCAC----TCG--GAACAA-ATCGT----AAAT--------GTT-----TGCCGCA---AATACTTCGCAATAAC-------C-----G-TA----------------------TGAAC---CATAA-ATGG--CC-CGTA-AA-TACT----CTTG-AAT-CGTT---CTTAAATAACTCTTAAA-AGTG-TC-TGAATCGTAGC-AATCCG-TGT----AGTT-TTACGGAT----TTG-TAG-AATACGT-AAG-----GAT-CCGT------AA----------GAAAAATCCGagaacacgtaaactgctcttaagaatccgtaaaacactcgtaaaaatgtttttaaacgaatctttgcggttagtttacgatatgttacagaaaatttacgagttgttgacgtattatattacgaacgcctaagtgatagatctatttacgatttcatttgcgtcggattacaatcgttttacggattgttcagagtcattaagaacacttacgtatagacacgattactttacgagtatttttgggctagtaaaaggagcagttgtagaaattgctgatacaattttaatctgttccatgcaatgtcagttgtcgaatgatttgcatagccaatttcgaacacttttgagtcaaaaacgcacacaatcgtaactaaccccaactattcgcaacagtacgttatcaatacgttaacaggtcgtgatgtacacgtaaaagctaagataaatcgtaatttccgtaaagtactcgtaataatccctaaaaagctcgtaaaatgtcgtaaattcgctcgcatttatccgtgttcactcggaacaaatcgtaaatgtttgccgcaaatacttcgcaataaccgtatgaaccataaatggcccgtaaatactcttgaatcgttcttaaataactcttaaaagtgtctgaatcgtagcaatccgtgtagttttacggatttgtagaatacgtaaggatccgtaagaaaaatccg
gi|6 : ttgtccacggatttccttttccgtaaataaCCCTTCACACTTAATGAGATTTTTCCTTACG-AGTCCTT-ACGG-A-TCTC--CGACT-CGTAGTCA
gi|6 : tTTTCCGTAAA---TTAC-CCG-TAAATCACTCGTTAGTAACTA--TCGTA--AA---CATGGTCCG-CAAAGA-ACA-CTAG-----A-G--ACTG--TTTCTA-----GAA-TCCG--TACA-AACACT-CGTAAAAAGCG------------AAT-CTTTGC-GGT--TAGTTT-A-CGAT-AT--AT-TACGGATAATT----TACGGG-T--TGTTTACGGATCAT--T--ACGAA------C-GCC--------TAATTAAGTG-ATA------TTTAC-----GGT-TTCA-----TTTGCG--TCGGATT-A--CAATCGCTTT-ACGGAT---TGTA-C-AGAGTCATT-AAGA-GC-ACTTTAC--GCA-------TAGACACGATTACTTT------------GGGC--TAGTGAAAGGAG----CAGTT-TT---A-----GTAATTGCTGAT--ACAA--TTTT-AATCTGTACCATT------------------------AA---TG----TCA-GTT-G-TCGA-A-TGA---TTA-T-------GT---AT-------AGCCAATTTCGGACACTTTTG-AGTAAAA-----AA----TGTA-CAC-------AA--------TC------------G---TAACTAACTCCCA----AC--TA---TTCGTAACAG--------------Catcgcaagcattcgtaaaccacccgtcgatannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntttccgtaaattacccgtaaatcactcgttagtaactatcgtaaacatggtccgcaaagaacactagagactgtttctagaatccgtacaaacactcgtaaaaagcgaatctttgcggttagtttacgatatattacggataatttacgggttgtttacggatcattacgaacgcctaattaagtgatatttacggtttcatttgcgtcggattacaatcgctttacggattgtacagagtcattaagagcactttacgcatagacacgattactttgggctagtgaaaggagcagttttagtaattgctgatacaattttaatctgtaccattaatgtcagttgtcgaatgattatgtatagccaatttcggacacttttgagtaaaaaatgtacacaatcgtaactaactcccaactattcgtaacagc
gi|7 : tcccttcacacttaatgagatttttccttacgagtccttacggatctccgactcgtagtcaatcgcaagcattcgtaaaccacccgtcgatannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnAGA--C-GCTTT-----TA-A---TATAGACACGATTACTT-ACGAGTACACTGTGGC--TAGTAAAAGGAG----CAGTT-TTGAAA-----GAAAATGCTGAT--ACAA--TTTT-AACCCGTACC--TC-----------T-----CA---TA----TG----CCATGGT-GCTCTA-AGTAA---T--------------------------GCCAGTTTCAAATACTTTTG-AGT-AAA-----AA----CATA-CAGTGTATAAAA--------TC------------G---TAACTAAGTCCCA----AA--TA---TTCGTAACA------------------------------C-AACG----TAAC--------AGCT-CGTAATTTAC-ACGTA-AA--AGC--------TAA-----GCTA--AAT-CGTA------ACTT-TA-----GTAATATACTCGTAACAAT--CCC---TAAAA--AGCTCGTAAAA-TG-TAATTAA-------------TT-GGT-C---ATATTCTT-TA-A-A-GTGTCTAAA----TCG--TAATAA-TCCGT----GTACTTTTACTGGTT-----TGTGG-----AATAAAT---AAGAAT------AC-----G-TA---------------------AGAAA
gi|8 : CCCCCTTCACACTCT-CG-GATTTTTC-TTGCG-AGTCCTT-ACGG-A-TCTC--CGACT-CGTAGTCAtatataggaatgtgaa
gi|8 : taCCGTAAA---TCAC-TCG-TAA--CAATCC---GCAACAA--TCGTA--AA---C-TGGTC-G-CAA-GA-ACA-C--G----TA-A--ACTG--CTCCTA--A--GAA-TCCG--TA-A-AACACT---TCAAAAATGTTTTTTAA--CGAAT-C----------------T-A-CGAT-AT--GT-TACAGATAATT----TACGAG-T--TGTTTACGTATTA------ATGGACATTTTC-GGC--------TGG----GTGAACA------TTTAC-----nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnataacccgtaaatcactcgtaacaatccgcaacaatcgtaaactggtcgcaagaacacgtaaactgctcctaagaatccgtaaaacacttcaaaaatgttttttaacgaatctacgatatgttacagataatttacgagttgtttacgtattaatggacattttcggctgggtgaacatttaca
gi|9 : tacccccttcacactctcggatttttcttgcgagtccttacggatctccgactcgtagtcannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnataacGTA-TCGTAACAAT--CCC---TTTAA--GCTTCGTAAAC-TG-TCGTAA--------------TT-GCTTC---GTA---TT-TATT-C-GT-T-TCACG---TCG--AAGAAA-TTCGT----AA--T-------G-T-----CGCCGT----AATGCATTGC-AGAAT------TC-----GTTA---------------------ATAATTTTGCGTAA-ATGGGTTC-TGTATAA-TACCGTGGCTTA-AA-----------TAAAT--CTTTTTAACAGGT-TC-T-AATCGTAACAAATCCA-TATAATAACTTATTACG---------G-TAG--AT-CGT-AA--------------------AA----------AAAAAACC--TGAATGTGAa
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|20 ): GATTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
Unaligned ( gi|24 ): AATTTCCATGACTTCCGAGCTTTGTCGAAAAAATAAAAATCGGATTAGTTCTACAGCAATGAAATGCTAAAACTACAA
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 111 1111111111111 222222 11111111 222222 11111 11111 1 333333333333 11 22222 3333333333333333333333333 1111 1111111 1111111 2222222222222222222222222222222 111 111111111111111 11111111 11111111 11111 111111 11111 2222222222222 11111 1111 111 1111 222222222 11111 4444444444444444444444444444444444444444 111 11111111 111111 1111111111
lowQualScore : 4 4 2 3 3 3 3 3 55 3 7777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 777 4 3 55 88888888 55 55 000 3 3 3 7 4 4 55 8888 4 55 2 55 0 99999 3 55 7 3 4 1111111111111 4 4 666 4 4 4 66 4 0 9999 4 55 1 99999 555555 4 66666666 9999 8 333333 11111 5 22222 2 66 5 66 5 888 88 5 5 55 0 333333333333 66 11 0 66 9999 44 777 00000 7 66 66 4 1111111111111111111111111 666 1111 7 3 3 3 3 666 3 1111111 666 1111111 3 5 99999 7777 3 7777777777777777777777777777777 666 88888 55 111 999999999999999 55 99999 4 0 4 66666666 4 8 4 55 66666666 11111 66 4 222222 5 33333 0 66 777 66 0 0 4 4 4444444444444 4 4 777 777 5 77777 5 5 5555 111 5 0000 777777777 22222 0 777 0 0000000000000000000000000000000000000000 9999 5 000 5 5 5 9999 2 4 4 66666666 11 0 3 3 3 0 3 3 8888 3 7777 7 3 1 3 99999 3 666666 5555555555 0
lowQualScore : . . . . . . . . .. . ............................................................................................................................... ... . . .. ........ .. .. ... . . . . . . .. .... . .. . .. . ..... . .. . . . ............. . . ... . . . .. . . .... . .. . ..... ...... . ........ .... . ...... ..... . ..... . .. . .. . ... .. . . .. . ............ .. .. . .. .... .. ... ..... . .. .. . ......................... ... .... . . . . . ... . ....... ... ....... . . ..... .... . ............................... ... ..... .. ... ............... .. ..... . . . ........ . . . .. ........ ..... .. . ...... . ..... . .. ... .. . . . . ............. . . ... ... . ..... . . .... ... . .... ......... ..... . ... . ........................................ .... . ... . . . .... . . . ........ .. . . . . . . . .... . .... . . . . ..... . ...... .......... .
lowQualScore : 0 0 1 6 6 6 6 6 00 6 0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 000 0 6 00 33333333 00 00 000 6 6 6 3 0 0 55 5555 0 55 3 55 3 55555 6 00 3 6 0 3333333333333 4 4 999 4 4 4 11 4 7 4444 0 55 0 33333 666666 4 11111111 4444 9 999999 11111 0 55555 0 99 0 99 0 888 66 0 0 22 0 111111111111 66 66 7 11 4444 66 888 66666 4 11 11 4 4444444444444444444444444 444 4444 3 6 6 6 6 444 6 8888888 444 8888888 6 1 11111 7777 6 2222222222222222222222222222222 444 77777 00 444 888888888888888 00 11111 0 7 0 11111111 4 9 4 55 11111111 11111 11 4 888888 0 11111 1 11 888 11 1 8 4 4 4444444444444 4 4 888 888 0 44444 6 0 6666 000 0 6666 666666666 55555 2 888 9 9999999999999999999999999999999999999999 0000 0 222 0 0 0 4444 0 4 4 22222222 55 5 6 6 6 4 6 6 5555 6 7777 3 6 2 6 11111 6 888888 9999999999 7
consensus : CCCCCTTCACACTCA-CG-GATTTTTC-TTACG-AGTCCTT-ACGG-A-TCTC--CGACT-CGTAGTCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTTCCGTAAA---TCAC-TCG-TAA--CAATCC---GTAACTA--TCGTA--AA---C-TGGTC-G-CAA-GA-ACA-C--G----TA-A--ACTG--CTCTTA--A--GAA-TCCG--TA-A-AACACT-CGTAAAAAACGTTTTTAAA--CGAAT-CTTTGC-GGT--TAGTTT-A-CGAT-AT--GT-TACGGATAATT----TACGAG-T--TGTTTACGNATTAT--T--ACGAA------C-GCC--------TAA----GTG-ATA------TTTAC-----GAT-TTCA-----TTCGCG--TCGGATT-A--CAATCGCTTT-ACGGAT---TGTT-C-AGAGTCATT-AAGA-GC-ACTTTAC--GTA-A---TATAGACACGATTACTTTACGAGTACTTTTGGGC--TAGTGAAAGGAG----CAGTT-GT---A-----GAAATTGCTGAT--ACAA--TTTT-AATCTGTACCATTC-----------T-GTTCCA-AGTAA---TG----TCA-GTT-G-TCGA-A-TGA---TTA-T-------GC---AT-------AGCCAATTTCGAACACTTTTG-AGTCAAA-----AA----CGTA-CAC-------AA--------TC------------G---TAACTAACTCCCG----AC--TA---TTCGTAACAG--------------CA--CGTT-----ATC-AACACGT-TAAC--------AGGT-CGTGATGTAC-ACGTA-AA--AGC--------TAA-----GGTA--AAT-CGTA------ACTT-TC-C---GTAAAGTACTCGTAATAAT--CCC---TAAAA--AGCTCGTAAAA-TG-TCGTAAA-------------TT-GCT-C---GTA---TT-TA-T-C-GTGT-TCAC----TCG--AAACAA-ATCGT----AAATT-------GTT-----CGCCGCA---AATACATCGCAAGAAC------TC-----G-TA---------------------ATAAAC---CGTAA-ATGG--CC-CGTA-AA-TACT----CTTA-AAT-CGTT---CTTAAATAGCTCTTTAA-AGTG-TC-TGAATCGTAAC-AATCCG-TGT----ACTT-TTACGGAT----TTG-TAG-AATACGT-AAG-----GAT-CCGT------AA----------GAAAAATCCGTGAGTGTGA
Reference ( family-971 ) : CCCCCTTCACACTCA-CG-GATTTTTC-TTACG-AGTCCTT-ACGG-A-TCTC--CGACT-CGTAGTCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTTCCGTAAA---TCAC-TCG-TAA--CAATCC---GTAACTA--TCGTA--AA---C-TGGTC-G-CAA-GA-ACA-C--G----TA-A--ACTG--CTCTTA--A--GAA-TCCG--TA-A-AACACT-CGTAAAAAACGTTTTTAAA--CGAAT-CTTTGC-GGT--TAGTTT-A-CGAT-AT--GT-TACGGATAATT----TACGAG-T--TGTTTACGNATTAT--T--ACGAA------C-GCC--------TAA----GTG-ATA------TTTAC-----GAT-TTCA-----TTCGCG--TCGGATT-A--CAATCGCTTT-ACGGAT---TGTT-C-AGAGTCATT-AAGA-GC-ACTTTAC--GTA-A---TATAGACACGATTACTTTACGAGTACTTTTGGGC--TAGTGAAAGGAG----CAGTT-GT---A-----GAAATTGCTGAT--ACAA--TTTT-AATCTGTACCATTC-----------T-GTTCCA-AGTAA---TG----TCA-GTT-G-TCGA-A-TGA---TTA-T-------GC---AT-------AGCCAATTTCGAACACTTTTG-AGTCAAA-----AA----CGTA-CAC-------AA--------TC------------G---TAACTAACTCCCG----AC--TA---TTCGTAACAG--------------CA--CGTT-----ATC-AACACGT-TAAC--------AGGT-CGTGATGTAC-ACGTA-AA--AGC--------TAA-----GGTA--AAT-CGTA------ACTT-TC-C---GTAAAGTACTCGTAATAAT--CCC---TAAAA--AGCTCGTAAAA-TG-TCGTAAA-------------TT-GCT-C---GTA---TT-TA-T-C-GTGT-TCAC----TCG--AAACAA-ATCGT----AAATT-------GTT-----CGCCGCA---AATACATCGCAAGAAC------TC-----G-TA---------------------ATAAAC---CGTAA-ATGG--CC-CGTA-AA-TACT----CTTA-AAT-CGTT---CTTAAATAGCTCTTTAA-AGTG-TC-TGAATCGTAAC-AATCCG-TGT----ACTT-TTACGGAT----TTG-TAG-AATACGT-AAG-----GAT-CCGT------AA----------GAAAAATCCGTGAGTGTGA
gi|1 : TTTTTC-TTACGTAGTCCTT-ACGGAA-TCTCAGAGACT-CGTAGTCA
gi|1 : CG-TAA--C----C---GTAACTA--TCGTA--AAACTT-TGGTC-G-CAA-AA-TCATC--GGGTATA-A--AC----CTGTAACGA--AAA-TCCG--TATA-AACACTTCGTAAAACGCG-----------AAAT-CTTTGCTGGTCTTAGTTTTA-CGAT-ATTAATATACGGATAACTCCCTTACGAGGT--TGTTTACGGACAAT-----ACGAAAACTGCT-GCTATAAAATATAA----GTG-ATAATCCT-TCCACCCTCGGGTGTTCACCTATTTTTCG--T---AT--A--AAATCGCTTT-ACGGATAACTGTAAC-AGAGTTATTTAAGATGCCACTTT-----TA-ACTCTATAGACACGATTAC---------ATTTCCCGGCAATAGTGAAAAGAGAACGCAGTTAGT---AACAATGAAA---CTTATCCACAAGATTTT-AATCTGTG--AGGC-----------C-GAT----GGTAAATGTGGTTCTTA-GTTTG-TCGA-A-TGACATTTACT-------GCCGTAT-------AGCCAATT-CGGACACTGTTGTAGTTAAA-----AA----AATAATACTT-----AACACCCATTTC------------GAAATAACTAACTCCGGTGAAAC--TACATTTAATAACAGTAACACCAAGAAAACA--CGTTTAACTATC-AACACTG-CAAC--------AGGTACGTGATGTACAACGTAGAA--AGCATAGATATTAATACAGGGTATGAGTGCGTAAACTCCATTT-TC-CGTGGTAAAGTACTC-CAATAATTCTCC---TAAGATGAACCCGTAAAATTG-TTCTAAAATATGGATTAAGGTT-GCT-CATAATA---TTGTAGT-C-GTGT-TCACTACTTCAACAAACAA-ATCGTGGAGAAATT-------GTTTAGTGCTCCGCACCCAATACATCGCAAGAACCTTACATC-----G-TAGTATCACCGTGAGAACTCGTAATAAAC---CGTAA-ATGG--CC-CGTA-CA-TGCT----CATA-AAT-CA------CTAAGTAGGTCTTTAA-AGTG-TC-TGAATTGTAAC-TACCCG-TGT----ACTT-TTACGGAT----TTG-TAG-AATACTT-TAG-----GAT-CCGT------AA----------GAAAatcgcaaacagtacgctattttcgtaaatcagctggtcgtcggatagaatcgttaagtagtcctcttcagtgcatgtctcggcacacagctgcgttcaggacagtgctctgtgaaaggttgggagacatcctgatatctatatttaaatagagcatgtcaaccaacttaatggtttttacgaagctctgtccacggatttcgtgtcccatcccgttaaattaccccgatttaaacctcaacgtaaccgtaactatcgtaaaactttggtcgcaaaatcatcgggtataaacctgtaacgaaaatccgtataaacacttcgtaaaacgcgaaatctttgctggtcttagttttacgatattaatatacggataactcccttacgaggttgtttacggacaatacgaaaactgctgctataaaatataagtgataatccttccaccctcgggtgttcacctatttttcgtataaaatcgctttacggataactgtaacagagttatttaagatgccacttttaactctatagacacgattacatttcccggcaatagtgaaaagagaacgcagttagtaacaatgaaacttatccacaagattttaatctgtgaggccgatggtaaatgtggttcttagtttgtcgaatgacatttactgccgtatagccaattcggacactgttgtagttaaaaaaataatacttaacacccatttcgaaataactaactccggtgaaactacatttaataacagtaacaccaagaaaacacgtttaactatcaacactgcaacaggtacgtgatgtacaacgtagaaagcatagatattaatacagggtatgagtgcgtaaactccattttccgtggtaaagtactccaataattctcctaagatgaacccgtaaaattgttctaaaatatggattaaggttgctcataatattgtagtcgtgttcactacttcaacaaacaaatcgtggagaaattgtttagtgctccgcacccaatacatcgcaagaaccttacatcgtagtatcaccgtgagaactcgtaataaaccgtaaatggcccgtacatgctcataaatcactaagtaggtctttaaagtgtctgaattgtaactacccgtgtacttttacggatttgtagaatactttaggatccgtaagaaa
gi|10 : tttttcttacgtagtccttacggaatctcagagactcgtagtcaatcgcaaacagtacgctattttcgtaaatcagctggtcgtcggatagaatcgttaagtagtcctcttcagtgcatgtctcggcacacagctgcgttcaggacagtgctctgtgaaaggttgggagacatcctgatatctatatttaaatagagcatgtcaaccaacttaatggtttttacgaagctctgtccacggatttcgtgtcccatcccgttaaattaccccgatttaaacctcaaCCCCCTTCACACTCA-CA-AAT---------------CCTT-ACGG-A-TCTC--CGACT-CGTAGTCA
gi|10 : ataA-TCTGATTG-A-AACA----GTAAAAAAAATGT----A--CGAGT-GTGTGC-GAT--CTGT------GAT-GA--GT-TACGGAT-ACC----GACGAG-T--GATTTACGAATACT--T--GCGAatcgcaagtattcgtaaatcactcgtcggtatccgtaactcatcacagatcgcacacactcgtacattttttttactgtttcaatcagataccgtgccatgtaaagcgtaaattctgagcccaaccgtgaattttttgacatgtcaattttttttttatgattgtccacggatttcgttttccgtaaatcactcgtaacaatctgtaactatcgtaaactggtcgcaagaacacgtaaacactgctcttatgaatccgtaaaacactcgtaaaaagtg
gi|10 : atacccccttcacactcacaaatccttacggatctccgactcgtagtcaaTTTTCCGTAAA---TCAC-TCG-TAA--CAATCT---GTAACTA--TCGTA--AA---C-TGGTC-G-CAA-GA-ACA-C--G----TA-AACACTG--CTCTTA--T--GAA-TCCG--TA-A-AACACT-CGTAAAAAaccgtgccatgtaaagcgtaaattctgagcccaaccgtgaattttttgacatgtcaattttttttttatgattgtccacggatttcgttttccgtaaatcactcgtaacaatctgtaactatcgtaaactggtcgcaagaacacgtaaacactgctcttatgaatccgtaaaacactcgtaaaaagtg
gi|11 : atacccccttcacactcacaaatccttacggatctccgactcgtagtcaatcgcaagtattcgtaaatcactcgtcggtatccgtaactcatcacagatcgcacacactcgtacattttttttactgtttcaatcagataccgtgccatgtaaagcgtaaattctgagcccaaccgtgaattttttgacatgtcaattttttttttatgattgtccacggatttcgCGAG-T--TGTTTACATACTAT--T--ACGAA------C-GCC--------TAA----GTG-ATA------TTTAC-----GAT-TTCA-----TTTGCG--TCGGATT-A--CAATCGCTTT-ACGGAT---TGTT-C-AGAGTCATT-AAGA-GC-ACTTTAC--GTA-----TATA--CACGATTACTTTACGAGTA-TTTTGGGC--TAGTGAAAGGAG----CAGTT-GT---A-----GAAATTGCTGAT--AAAA--TTTT-AATATGTACCTGTC-----------T-GTTCTA-AGTAA---TG----TCA-GTT-G-TCGA-A-TGA---TTA-T-------GC---AT-------AGCCAATTTCGAACACTTTTG-AATCAAA-----AG----CGCA-CAC-------AA--------TC------------G---TAACTAAC-CCCA----AC--TC---TTCGTAACAG--------------CA--CGTT-----ATC-AACACGT-TAAgtg
gi|12 : TTTTCCGTAAA---TAAT-TTACTAA--AAA-CT---TT--CTT--TCAT------------GTC-T-TAA-TA-AC-----G----TA-A--ACTG--CTCGTA--AAAGAA-TCCG--TT-TTAACATT-AGTAAAA--CTTTTTTAAAAACAAAG---TTAC-GGT--TA-CTT-ATCAATTAT--GT-TGCA-ATAGTT----TACGTG-T--TATATACAGATTAT--TTAAC-AA------T-GCG--------TAG----GTG-ATA------TTTAC-----GAT-TACA------TCAAG--TCGGG-T-AGCCAACAGTCTC-ACGGAT---TGT----ATAGTCACT-AA
gi|13 : cgtaaaggttccggaaagtggtgaacattttttacgatgtcaaaaaatcaacgattgtccaacggattttaCTTT-----TA-A---TATAGACACGATTACTT-ACGAGTACACTGTGGC--TAGTAAAAGGAG----CAGTT-AT---AAAAG-GAAA-TGCTGAT--ACAA--TTTT-AACCTGTACCTCTCATATGCCACGGT-GCTCTA-AGTAA---TG----CCA-GTT-G-TCGA-A-TTA---TTA-T-------AC---AT-------AGCCAATTTCAAATACTTTTG-AGT-ATA-----AA----CATA-TAT-------AA--------TC------------G---TAACTAACTCCCG----AA--TA---TTCGTAACAG--------------CA--CG-------------------TAAC--------AGCT-CGTAATTTAC-ACGTA-AA--AGT--------TAG-----GATA--AAT-CGTA------A
gi|14 : g--AGC--------TAT-----GCTA--AGT-CGTA------ACTT----A---GTAATGTACTCGTAACAAT--CCC---TATAA--AGCTCGTAAAC-TG-TCGTAAA-------------TT-GCT-C---GTA---TT-TATT-C-GTTT-TCAC----TCG--AAAGAA-ATCGT----AAA-T-------GTT-----CGCCGTA---AATGCATTGCAAGAAC------TC-----G-TA---------------------ATAAAT---CGTAA-ATGG--TC-TGTA-AA-TACT----C--------CGTT---CTTAAATAACTTTTTAA-AGTG-TC-TAAATCGTAAC-AATCCA-TGT----ACTT-TTACGGA-------------------T-AAG-----GAT-TCGTAAA---AA----------AAAAAATCCGTGAtnnnnnnnnnnnnnnnnnnnnnnnnncct
gi|15 : CCCCCTTCACATTCA-CG-GATTTTTC-TAACG-AGTCCTT-ACGG-A-TCTC--CGACT-CGTAGACAa
gi|15 : CCGTAAA---TCAT-TCG-TAA--CAAACC---GTAACTA--TCGTA--AA---C-TGGTC-G-CAA-Gnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaacatttttatgattgtcgaatttaacccgtaaatcattcgtaacaaaccgtaactatcgtaaactggtcgcaag
gi|16 : cccccttcacattcacggatttttctaacgagtccttacggatctccgactcgtagacannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaacatttttatgattgtcgaatttaacTACCATGC-----------T-GTTCCA-AGTAA---TG----CCA-GTT-G-TCAA-A-TGA---TTA-T-------AC---ATTGTACATGGCCAATTTCGAACACTTTTG-AGTCAAA-----AA----TGTA-AAC-------TA--------TCGTGCATGTACATG---TAACTAACTCCCG----AC--TA---TTCTTAACAG--------------TA--CGTT-----AT---ACATGTATAACCATGTAAAAGAT-CGTGATTTAC-GCTTA-AA--A
gi|17 : aA---AATGCTTTGCAAGAA-------TCAAGTAG-CA---------------------ATAAAC---CTTAA-ATGG--CCTCATA-T--TGCT----CGTA-AATACACT------AAACA-TTATTTAA-AGTG-TC-TAAATCGTAAC-AATCCGATGT----ACGT-ATACTGAT----TTG-AAGTAATGCGT-AAA-----GAT-TCGTCAGAAAAA----------GAAAAATCC-TGAGTGT
gi|18 : atgctaaccttTAA---TG-----CATGTT-G-TCAAGA-TGA---TTA-TTCATTTGAC---AT-------GGCCAATTTCGA-CACTTTTG-AGTCAAATGATTAACTATCGTG-CAT-------GT--------CT------------G---TAACTAATTCCCG----ACTTTA---TTT-TAAC----------------TA--CGTT-----
gi|19 : gcgttcatagtCCACCTTCATACACA-CG-GATTTT-C-TTACG-AGTCATT-TCGG-ATTTTC--CGACT-CGAAGTCAcatgtttaccttgttatata
gi|2 : aCCCCCTTCACACTCA-CG-GATTTTTC-TTACG-AGTCCTT-ACGG-A-TCTC--CGACT-CGTAGTCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTTCCGTAAA---TCAC-TCG-TAA--CAATCT---GTAACTA--TCGTA--AA---C-TTGTT-G-CAA-GA-ACA-C--G----TA-A--ACTG--CTCTTA--A--GAA-ACCG--TA-A-AACACT-CGTAAAAAATGTTTTTAAA--CGAAT-CTTTGC-GGT--TAGTTT-A-CGAT-AT--GT-TACAGATAATT----TACGAG-T--TGTTTACGTATTAT--T--ACGAA------C-GCC--------TAT----GTG-ATA------TT-AC-----GAT-TTCA-----TTTGTG--TCGGATT-A--CAGTCGCTTT-A-GGAT---TGTT-C-AGAGTCATT-AAGA-GC-ACTTTACATGTACG---TATAGACACGATTACTTTACGAGTATTTTTGGGC--TAGTGAAAGGAG----CAGTT-GT---A-----GAAATTGCTGAT--GCAA--TTTT-AATCTGTACCATTC-----------T-GTTTCA-AGTAA---TG----TCA-GTT-G-TCGA-A-TGA---TTA-T-------GC---AT-------AGCCAATTTCGAACACTTTTG-AGTCAAA-----AA----CGCA-CAC-------AA--------TC------------G---TAACTAACTCTCA----AC--TA---TTCGTAACAG---------------A--CGTT-----ATC-AACACGT-TAAC--------AGGT-CGTGATGTAC-ACGTA-AA--AGC--------TAA-----GGTA--AAT-CGTA------ACTT-TC-C---GTAAAGTACTCGTAATAAT--CCC---TAAAA--ATCTCGTAAAA-TG-TCGTAAA-------------TT-GTT-C---GTA---TT-TA-T-C-GTGT-TCAC----TCG--AAACAA-ATCGT----AAATT-------GTT-----TGCCGCA---AATACATCGCAAGAAC------TT-----G-TG---------------------ATAAAA---CGTAA-ATGG--CC-CGTA-AA-TACT----CTTA-AAT-CATT---CTTAAATAGCTCTTAAA-TGTG-TC-TGAATCGTAGC-AATCCG-TGT----ACTT-TTACGGAT----TTG-TAG-AATACGT-AAG-----GAT-CCGT------AA----------G-AAAATCCATGAGTGTGAaatcaagccggtaaatatctcgtcgactagtgttttatactttcatttgccacgactcgcagcaccactcgtaag
gi|21 : CCCTCTTCATACTCA-TG-GATTTTTC-GTACT-AGTAATT-ACGG-A-TCTC--CGACT-CGTAGTCA
gi|21 : taT-TTACGAATGCTTTTGATTG-ACTACG---AGTCGGAGAT-CCGT------AATTACTAGTACGAAAAATCCATGAGTATGAatcaaaagcattcgtaaatcactcgtcgg
gi|22 : taccctctTCTTTAG-AGTG-TC-TAAATCGTAAC-AATCCG-TGT----ACTT-TTACTGGT----TTG-TGG-AATACAT-AAG-----AAT-ACGT------AA----------GAAAAATATGGGAATGtcactcgtcgg
gi|23 : TAGTTCTTAAA-AGTG-TG-TAAATCGTAAC-AATTCG-TGT----ACTT-TTACGGAT----TTG-TGG-AATACGT-AAG-----GAT-CCGT------AA----------ACAAAATCCGT
gi|25 : TTCACACTCA-AG-AATTTT-C-TTAAG-AGTCGTT-ATTG-A-TCTC--CGATT-CGTAGTCA
gi|26 : accacaG--------------CA--CGTT-----ATC-AACACGT-TAAC--------AGGT-CGGTATGTAC-ACGTA-AA--AGC--------TAA-----GGTA--AAT-CGTA------atttgcaagcatt
gi|3 : CCCCCTTCACA-TCA-CG-GATTTTTC-TAACG-AGTCCTTAACGG-A-TCTC--CGACTCCGTAG
gi|3 : cATT----TTTAGAAT-TGTCGAATTTAAAC-GCCCGGTAA-AGTG-TCATG--TCGTAAC-AAGCCG-Tgacatccgcaaagcaattcgtgcaaatactctcggaatccgttagacaactcgcacagctcgccaactcgaaggaatgtcaaaaaacaatttttagaattgtcgaatttaaacgcccggtaaagtgtcatgtcgtaacaagccgtaactaaaccgtaaaactgtcgacaaagagacacgtacagccgtactcctaagaaatccgtagaacactcgtaaaaaattattttaaacgaattctttgcggtagtttacgatatgttacagataatttacgcaccgtgtttacgtattattacgaacggcctaagtgcatatttacgatttcatttgcggtccggattaacaatcgctttggcggattgttcaagagtcattaaagacaactttacgtaagacacgatactgttcgagtattgtgggctgtgaaagggcagttgtagaatgctgatacaattttaaatctgtaccattctggttccatagtaatgttcagttgtcgaatgatatgcatagccattcgacactttgagtgaaaaacgcacacacgtaactaactccactaattccgtaacagcacgcgtaatcaaacacgtttacaggtcatgatgtacaacgtaaaacagctaaggtaatcgcaacttatcgcgtaaataccgtaataatccctaaagcgcgtaaaatgttcgtaaatggctcatatgtatccgtttcactcggacaacatcgtaaatgtgtgcgcaaatacatcgcaagaatcgtaataaaccgtaacatggccgtaaactactcttaaatcactctaaatagctcttaaaagtgttctgaatcgtagtaaccggtgtacttttacggatttattagaatacgtgaaggataacgtaagaaaaatccgcagtgtga
gi|3 : ccccccttcacatcacggatttttctaacgagtccttaacggatctccgactccgtaggacatccgcaaagcaattcgtgcaaatactctcggaatccgttagacaactcgcacagctcgccaactcgaaggaatgtcaaaaaacaGTAAAGTGTCATGTCG-TAA--CAAGCC---GTAACTAAACCGTA--AAA--C-TG-TC-GACAAAGAGACA-C--G----TACA--GCCGTACTCCTA--A--GAAATCCG--TA-G-AACACT-CGTAAAAAATTATTTTAAA--CGAATTCTTTGC-GGT---AGTTT-A-CGAT-AT--GT-TACAGATAATT----TACGCA-CCGTGTTTACGTATTAT--T--ACGAA------CGGCC--------TAA----GTGCATA------TTTAC-----GAT-TTCA-----TTTGCGGTCCGGATTAA--CAATCGCTTTGGCGGAT---TGTT-CAAGAGTCATT-AAAG-ACAACTTTAC--GTA--------AGACACGA-TACTGTTCGAGTA-TTGTGGGC--T-GTGAAAGG-G----CAGTT-GT---A-----GAA--TGCTGAT--ACAA--TTTTAAATCTGTACCATTC-----------TGGTTCCATAGTAA---TGT---TCA-GTT-G-TCGA-A-TGA----TA-T-------GC---AT-------AGCCA--TTCG-ACAC-TTTG-AGTGAAA-----AA----CGCA-CAC-------A----------C------------G---TAACTAACTCC------AC--TAAT-TCCGTAACAG--------------CACGCGTA-----ATCAAACACGT-TTAC--------AGGT-CATGATGTACAACGTA-AAACAGC--------TAA-----GGT---AAT-CGCA------ACTTATCGC---GTAAA-TAC-CGTAATAAT--CCC---T--AA--AGCGCGTAAAA-TGTTCGTAAA-------------TG-GCT-C---ATA---TG-TA-TCC-GT-T-TCAC----TCG---GACAACATCGT----AAA-T-------GTG-----TG-CGCA---AATACATCGCAAGAA-------TC-----G-TA---------------------ATAAAC---CGTAACATGG---C-CGTA-AACTACT----CTTA-AAT-CACT---C-TAAATAGCTCTTAAA-AGTGTTC-TGAATCGTAGT-AACCGG-TGT----ACTT-TTACGGAT----TTATTAG-AATACGTGAAG-----GATAACGT------AA----------GAAAAATCCGC-AGTGTGAaactaaaccgtaaaactgtcgacaaagagacacgtacagccgtactcctaagaaatccgtagaacactcgtaaaaaattattttaaacgaattctttgcggtagtttacgatatgttacagataatttacgcaccgtgtttacgtattattacgaacggcctaagtgcatatttacgatttcatttgcggtccggattaacaatcgctttggcggattgttcaagagtcattaaagacaactttacgtaagacacgatactgttcgagtattgtgggctgtgaaagggcagttgtagaatgctgatacaattttaaatctgtaccattctggttccatagtaatgttcagttgtcgaatgatatgcatagccattcgacactttgagtgaaaaacgcacacacgtaactaactccactaattccgtaacagcacgcgtaatcaaacacgtttacaggtcatgatgtacaacgtaaaacagctaaggtaatcgcaacttatcgcgtaaataccgtaataatccctaaagcgcgtaaaatgttcgtaaatggctcatatgtatccgtttcactcggacaacatcgtaaatgtgtgcgcaaatacatcgcaagaatcgtaataaaccgtaacatggccgtaaactactcttaaatcactctaaatagctcttaaaagtgttctgaatcgtagtaaccggtgtacttttacggatttattagaatacgtgaaggataacgtaagaaaaatccgcagtgtga
gi|4 : ccccccttcacatcacggatttttctaacgagtccttaacggatctccgactccgtaggacatccgcaaagcaattcgtgcaaatactctcggaatccgttagacaactcgcacagctcgccaactcgaaggaatgtcaaaaaacaatttttagaattgtcgaatttaaacgcccgCCCCCTTCACACTCA-CA-GATTTTTC-TTATG-AGTCCTT-ACGG-A-TCTC--CAACT-CATAGTCA
gi|4 : aGTAAA---TCAC-TCG---------TCG---GTATCCA--T--TAATAA---C-TCGTC-A-C----A-ACT-C--G----CA-C--AC-A--CTCGTA--A--GGA-TCCA--TG-A-AAatcgcaggcatttgtaaatcactcgtcggtatccattaataactcgtcacaactcgcacacactcgtaaggatccatgaaagttgggctaaatttcttgacatgtcaaaaaaaaattatgattgtccacaaattttattttccgtaaatcactcgtaactatcataaactggttgcaagaacacgtaaactgctcttaagaattcgtaaaacactcgtaaaaaaaattttttaacgaatctttgcagttagtttacgatttgttagagatagttttcgagttgtttacagatcattgcgaatgcctaagtgatatttacgatctctttcacatcgggttacgatcgctttacagattgttcagagttattaagagcacttcaagtatagacatgattactttacgagtacatttgggctagtgaaaggagcagttttagaaattgctgatacaattttaatctgtaccatgctgttccaagtaatgtcagttgttgaatgattatacatagccaatttcgaacacttttgagtcaaaaacgtaaacaatcgtaattaactcccaactattcataacagcatgttatcaacatgttaacatgttgtgatgtacacgtaaaaactaaggtaaattgtaactttccgtaaagtactcgtaataatccctaaaagctcgtaaaatgtcataaattgttcataattatccgtgttcactcggaacaaatcgtaaatgtttaccgcaaatacatcgcaagaactcatagtaaatactcttaaatcattcttaaatagctctttaaagtggctgaatcgtaacaatctgtgtacttttacggattcatagaatccgtaagaaaaatctgtgag
gi|4 : acccccttcacactcacagatttttcttatgagtccttacggatctccaactcatagtcaatcgcaggcatttTTTTCCGTAAA---TCAC-TCG-TAA--C-------------TA--TCATA--AA---C-TGGTT-G-CAA-GA-ACA-C--G----TA-A--ACTG--CTCTTA--A--GAA-TTCG--TA-A-AACACT-CGTAAAAAAAATTTTTTAA--CGAAT-CTTTGC-AGT--TAGTTT-A-CGAT-TT--GT-TAGAGATAGTT----TTCGAG-T--TGTTTACAGATCAT--T--GCGAA------T-GCC--------TAA----GTG-ATA------TTTAC-----GAT-CTCT-----TTCACA--TCGGGTT-A--CGATCGCTTT-ACAGAT---TGTT-C-AGAGTTATT-AAGA-GC-ACTTCA-----A-G---TATAGACATGATTACTTTACGAGTACATTTGGGC--TAGTGAAAGGAG----CAGTT-TT---A-----GAAATTGCTGAT--ACAA--TTTT-AATCTGTACCATGC-----------T-GTTCCA-AGTAA---TG----TCA-GTT-G-TTGA-A-TGA---TTA-T-------AC---AT-------AGCCAATTTCGAACACTTTTG-AGTCAAA-----AA----CGTA-AAC-------AA--------TC------------G---TAATTAACTCCCA----AC--TA---TTCATAACAG--------------CA--TGTT-----ATC-AACATGT-TAAC--------ATGT-TGTGATGTAC-ACGTA-AA--AAC--------TAA-----GGTA--AAT-TGTA------ACTT-TC-C---GTAAAGTACTCGTAATAAT--CCC---TAAAA---GCTCGTAAAA-TG-TCATAAA-------------TT-GTT-C---ATA---AT-TA-T-CCGTGT-TCAC----TCG--GAACAA-ATCGT----AAAT--------GTT-----TACCGCA---AATACATCGCAAGAAC------TC-----A-TA----------------------------------------------GTA-AA-TACT----CTTA-AAT-CATT---CTTAAATAGCTCTTTAA-AGTG-GC-TGAATCGTAAC-AATCTG-TGT----ACTT-TTACGGAT----TCA-TAG-A----------------AT-CCGT------AA----------GAAAAATCTGTGAGgttgggctaaatttcttgacatgtcaaaaaaaaattatgattgtccacaaattttattttccgtaaatcactcgtaactatcataaactggttgcaagaacacgtaaactgctcttaagaattcgtaaaacactcgtaaaaaaaattttttaacgaatctttgcagttagtttacgatttgttagagatagttttcgagttgtttacagatcattgcgaatgcctaagtgatatttacgatctctttcacatcgggttacgatcgctttacagattgttcagagttattaagagcacttcaagtatagacatgattactttacgagtacatttgggctagtgaaaggagcagttttagaaattgctgatacaattttaatctgtaccatgctgttccaagtaatgtcagttgttgaatgattatacatagccaatttcgaacacttttgagtcaaaaacgtaaacaatcgtaattaactcccaactattcataacagcatgttatcaacatgttaacatgttgtgatgtacacgtaaaaactaaggtaaattgtaactttccgtaaagtactcgtaataatccctaaaagctcgtaaaatgtcataaattgttcataattatccgtgttcactcggaacaaatcgtaaatgtttaccgcaaatacatcgcaagaactcatagtaaatactcttaaatcattcttaaatagctctttaaagtggctgaatcgtaacaatctgtgtacttttacggattcatagaatccgtaagaaaaatctgtgag
gi|5 : acccccttcacactcacagatttttcttatgagtccttacggatctccaactcatagtcaatcgcaggcatttgtaaatcactcgtcggtatccattaataactcgtcacaactcgcacacactcgtaaggatccatgaaagttgggctaaatttcttgacatgtcaaaaaaaaattatgattgtccacaaattttaTT-TC-C---GTAAATAATCCGTA--AAT--CACTTGTAACA--ATC-CGT-AAC-TA-TCGTAAA-------------CT-GGT-C---GTA---
gi|5 : ttgtccacggatttcctTCCGTAAA---TCAC-TTG-TAA--CAATCC---GTAACTA--TCGTA--AA---C-TGGTC-G-TAA-GA-ACA-C--G----TA-A--ACTG--CTCTTA--A--GAA-TCCG--TA-A-AACACT-CGTAAAAA-TGTTTTTAAA--CGAAT-CTTTGC-GGT--TAGTTT-A-CGAT-AT--GT-TACAGAAAATT----TACGAG-T--TGTTGACGTATTATATT--ACGAA------C-GCC--------TAA----GTG-ATAGATCTATTTAC-----GAT-TTCA-----TTTGCG--TCGGATT-A--CAATCGTTTT-ACGGAT---TGTT-C-AGAGTCATT-AAGA-AC-ACTT-AC--GTA-------TAGACACGATTACTTTACGAGTATTTTTGGGC--TAGTAAAAGGAG----CAGTT-GT---A-----GAAATTGCTGAT--ACAA--TTTT-AATCTGTTCCAT-----------------------GCAA---TG----TCA-GTT-G-TCGA-A-TGA---TT--T-------GC---AT-------AGCCAATTTCGAACACTTTTG-AGTCAAA-----AA----CGCA-CAC-------AA--------TC------------G---TAACTAAC-CCCA----AC--TA---TTCGCAACAG--------------TA--CGTT-----ATC-AATACGT-TAAC--------AGGT-CGTGATGTAC-ACGTA-AA--AGC--------TAA-----GATA--AAT-CGTA------A-TT-TC-C---GTAAAGTACTCGTAATAAT--CCC---TAAAA--AGCTCGTAAAA-TG-TCGTAAA-------------TTCGCT-C---GCA---TT-TA-T-CCGTGT-TCAC----TCG--GAACAA-ATCGT----AAAT--------GTT-----TGCCGCA---AATACTTCGCAATAAC-------C-----G-TA----------------------TGAAC---CATAA-ATGG--CC-CGTA-AA-TACT----CTTG-AAT-CGTT---CTTAAATAACTCTTAAA-AGTG-TC-TGAATCGTAGC-AATCCG-TGT----AGTT-TTACGGAT----TTG-TAG-AATACGT-AAG-----GAT-CCGT------AA----------GAAAAATCCGagaacacgtaaactgctcttaagaatccgtaaaacactcgtaaaaatgtttttaaacgaatctttgcggttagtttacgatatgttacagaaaatttacgagttgttgacgtattatattacgaacgcctaagtgatagatctatttacgatttcatttgcgtcggattacaatcgttttacggattgttcagagtcattaagaacacttacgtatagacacgattactttacgagtatttttgggctagtaaaaggagcagttgtagaaattgctgatacaattttaatctgttccatgcaatgtcagttgtcgaatgatttgcatagccaatttcgaacacttttgagtcaaaaacgcacacaatcgtaactaaccccaactattcgcaacagtacgttatcaatacgttaacaggtcgtgatgtacacgtaaaagctaagataaatcgtaatttccgtaaagtactcgtaataatccctaaaaagctcgtaaaatgtcgtaaattcgctcgcatttatccgtgttcactcggaacaaatcgtaaatgtttgccgcaaatacttcgcaataaccgtatgaaccataaatggcccgtaaatactcttgaatcgttcttaaataactcttaaaagtgtctgaatcgtagcaatccgtgtagttttacggatttgtagaatacgtaaggatccgtaagaaaaatccg
gi|6 : ttgtccacggatttccttttccgtaaataaCCCTTCACACTTAATGAGATTTTTCCTTACG-AGTCCTT-ACGG-A-TCTC--CGACT-CGTAGTCA
gi|6 : tTTTCCGTAAA---TTAC-CCG-TAAATCACTCGTTAGTAACTA--TCGTA--AA---CATGGTCCG-CAAAGA-ACA-CTAG-----A-G--ACTG--TTTCTA-----GAA-TCCG--TACA-AACACT-CGTAAAAAGCG------------AAT-CTTTGC-GGT--TAGTTT-A-CGAT-AT--AT-TACGGATAATT----TACGGG-T--TGTTTACGGATCAT--T--ACGAA------C-GCC--------TAATTAAGTG-ATA------TTTAC-----GGT-TTCA-----TTTGCG--TCGGATT-A--CAATCGCTTT-ACGGAT---TGTA-C-AGAGTCATT-AAGA-GC-ACTTTAC--GCA-------TAGACACGATTACTTT------------GGGC--TAGTGAAAGGAG----CAGTT-TT---A-----GTAATTGCTGAT--ACAA--TTTT-AATCTGTACCATT------------------------AA---TG----TCA-GTT-G-TCGA-A-TGA---TTA-T-------GT---AT-------AGCCAATTTCGGACACTTTTG-AGTAAAA-----AA----TGTA-CAC-------AA--------TC------------G---TAACTAACTCCCA----AC--TA---TTCGTAACAG--------------Catcgcaagcattcgtaaaccacccgtcgatannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntttccgtaaattacccgtaaatcactcgttagtaactatcgtaaacatggtccgcaaagaacactagagactgtttctagaatccgtacaaacactcgtaaaaagcgaatctttgcggttagtttacgatatattacggataatttacgggttgtttacggatcattacgaacgcctaattaagtgatatttacggtttcatttgcgtcggattacaatcgctttacggattgtacagagtcattaagagcactttacgcatagacacgattactttgggctagtgaaaggagcagttttagtaattgctgatacaattttaatctgtaccattaatgtcagttgtcgaatgattatgtatagccaatttcggacacttttgagtaaaaaatgtacacaatcgtaactaactcccaactattcgtaacagc
gi|7 : tcccttcacacttaatgagatttttccttacgagtccttacggatctccgactcgtagtcaatcgcaagcattcgtaaaccacccgtcgatannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnAGA--C-GCTTT-----TA-A---TATAGACACGATTACTT-ACGAGTACACTGTGGC--TAGTAAAAGGAG----CAGTT-TTGAAA-----GAAAATGCTGAT--ACAA--TTTT-AACCCGTACC--TC-----------T-----CA---TA----TG----CCATGGT-GCTCTA-AGTAA---T--------------------------GCCAGTTTCAAATACTTTTG-AGT-AAA-----AA----CATA-CAGTGTATAAAA--------TC------------G---TAACTAAGTCCCA----AA--TA---TTCGTAACA------------------------------C-AACG----TAAC--------AGCT-CGTAATTTAC-ACGTA-AA--AGC--------TAA-----GCTA--AAT-CGTA------ACTT-TA-----GTAATATACTCGTAACAAT--CCC---TAAAA--AGCTCGTAAAA-TG-TAATTAA-------------TT-GGT-C---ATATTCTT-TA-A-A-GTGTCTAAA----TCG--TAATAA-TCCGT----GTACTTTTACTGGTT-----TGTGG-----AATAAAT---AAGAAT------AC-----G-TA---------------------AGAAA
gi|8 : CCCCCTTCACACTCT-CG-GATTTTTC-TTGCG-AGTCCTT-ACGG-A-TCTC--CGACT-CGTAGTCAtatataggaatgtgaa
gi|8 : taCCGTAAA---TCAC-TCG-TAA--CAATCC---GCAACAA--TCGTA--AA---C-TGGTC-G-CAA-GA-ACA-C--G----TA-A--ACTG--CTCCTA--A--GAA-TCCG--TA-A-AACACT---TCAAAAATGTTTTTTAA--CGAAT-C----------------T-A-CGAT-AT--GT-TACAGATAATT----TACGAG-T--TGTTTACGTATTA------ATGGACATTTTC-GGC--------TGG----GTGAACA------TTTAC-----nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnataacccgtaaatcactcgtaacaatccgcaacaatcgtaaactggtcgcaagaacacgtaaactgctcctaagaatccgtaaaacacttcaaaaatgttttttaacgaatctacgatatgttacagataatttacgagttgtttacgtattaatggacattttcggctgggtgaacatttaca
gi|9 : tacccccttcacactctcggatttttcttgcgagtccttacggatctccgactcgtagtcannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnataacGTA-TCGTAACAAT--CCC---TTTAA--GCTTCGTAAAC-TG-TCGTAA--------------TT-GCTTC---GTA---TT-TATT-C-GT-T-TCACG---TCG--AAGAAA-TTCGT----AA--T-------G-T-----CGCCGT----AATGCATTGC-AGAAT------TC-----GTTA---------------------ATAATTTTGCGTAA-ATGGGTTC-TGTATAA-TACCGTGGCTTA-AA-----------TAAAT--CTTTTTAACAGGT-TC-T-AATCGTAACAAATCCA-TATAATAACTTATTACG---------G-TAG--AT-CGT-AA--------------------AA----------AAAAAACC--TGAATGTGAa
blockSeqs : A A T C . A . T . C GTG G C AT ACTCGTTA AA AT A A C A A G . TA . C AC T TA AAA A AT C T . CTTTTTTAAAAA T . C . T T . . . . CG A TTA CATTTT G . TTAA C GATCTA . . . T GT A GC G . T A . G A ACATGTACG TA CA . . G GAA AAAG T . . A TCTCATATGCCACGGTGCTCTAA . T T . C G G . . TCATTTG . TGTACAT . C TGATT CTAT . TATCGTGCATGTACAT . A TT AT C CG . A A CATGTAAA . A . AC . . . . . A GC . TTG . . T . C T . TTC . TTC T C G A C . CTTTTACTG . . TCAAGTAGCAA TTTG C GTT T T C GTGG G G A GTCGAATT AA C T A A A AATA A GCTT A T G G TCGGA A CAGAAA TTACTAGTAC
blockSeqs : . . T . . . . . . . . . . . AATCT . . . . . . A . . . . . . T . T . . . . . ATGTTTTTAAA . . T . . . . . . . . T ATT . . . . A . . . . C . . . . . T . . G . ACGTA TA TT . . A . . T . . . ATTCTGGTTCCATA . . T . . . . . . . . . . C . . . TGTATAAAATC . G . . C . . . . . . . . . . . . . . . A . . . . . . . . . . . TCC G . . A . . TT . . TTCGTTAA T . T . . . . T . . GTTCT AG . . . . . . . . T . A . . . AAA .
blockSeqs : . . T . . . . . . . . . . . AAACC . . . . . . . . . . . . . T . A . . . . . ATTATTTTAAA . . T . . . . . . . . G T . . . . . . . . . T . . . . . T . . A . ACGTA TT CA . . G . . T . . . TGTCTGTTCTAA . . . . . . . . . . . . . C . . . AATC . G . . T . . . . . . . . . . . . . . . C . . . . . . . . . . . TCC G . . G . . T . . CTCGTAA C . C . . . . T . . ATTCT AG . . . . . . . . . . A . . . . .
blockSeqs : . . T . . . . . . . . . . . AATCT . . . . . . . . . . . . . C . A . . . . . AAATTTTTTAA . . T . . . . . . . . T T . . . . . . . . . T . . . . . T . . G . ACGTA TA TT . . G . . T . . . ATGCTGTTCCAA . . . . . . . . . . . . . C . . . AATC . G . . T . . . . . . . . . . . . . . . C . . . . . . . . . . . TCC G . . G . . T . . CTTGTGA A . C . . . . T . . ATTCT AG . . . . . . . . . . A . . . . .
blockSeqs : . . T . . . . . . . . . . . AAGCC . . . . . . . . . . . . . T . A . . . . . ATGTTTTTTAA . . T . . . . . . . . T T . . . . . . . . . C . . . . . T . . A . ACGCA TA CA . . T . . T . . . ATTCTGTTTCAA . . . . . . . . . . . . . G . . . GTCT . A . . C . . . . . . . . . . . . . . . C . . . . . . . . . . . TTC G . . T . . T . . TACGTAA C . C . . . . T . . GTTCT AG . . . . . . . . . . A . . . . .
blockSeqs : . . T . . . . . . . . . . . AATCC . . . . . . . . . . . . . T . A . . . . . TGTTTTTAAA . . T . . . . . . . . G T . . . . . . . . . T . . . . . A . . G . TAA A T . . G . . A . . . ATGCTGTTCCAA . . . . . . . . . . . . . C . . . AATC . A . . C . . . . . . . . . . . . . . . C . . . . . . . . . . . TC . . . A . . T . . TCGTAA C . . . . . . T . . ACTC AA . . . . . . . . . . A . . . . .
blockSeqs : . . T . . . . . . . . . . . AATCC . . . . . . . . . . . . . T . A . . . . . AAATGTA . . . . . . . . . . . T T . . . . . . . . . T . . . . . . . . . . AAG T T . . T . . . . . . TCTCA . . . . . . . . . . . . . C . . . AATC . A . . C . . . . . . . . . . . . . . . . . . . . . . . . . . . AA . . . . . . T . . CTCATA . . . . . . . T . . ACT A . . . . . . . . . . A . . . . .
blockSeqs : . . . . . . . . . . . . . . AACT . . . . . . . . . . . . . T . A . . . . . GCG . . . . . . . . . . . G T . . . . . . . TAA A . . . T . . . . . . ATT . . . . . . . . . . . . . A . . . AATC . A . . T . . . . . . . . . . . . . . . . . . . . . . . . . CCGTA . . . . . G . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . TCG . . . . . . . . . . . . . . . . . . . . . . . T . AT . . . . . . . . . . . . . . . . . AATC . A . . C . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . AC . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : .
blockSeqCons : ** AATCC*** *** **** A**** ATGTTTTTAAA** T** ** **** T**** ****** ******** ****** ***** ***** *** T* G* ACGTA******* TA ** **** G* ***** ** ** ATGCTGTTCCAA************* *** **** *** *** AATC*************************** *** A**** *** C************** ***** ******** ***** ** ****** C**** ** ** ************* *** **** A** **** T******** ***** *** CTCGTAA********************************* GTTCT***
originalCons : CCCCCTTCACACTCA-CG-GATTTTTC-TTACG-AGTCCTT-ACGG-A-TCTC--CGACT-CGTAGTCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTTCCGTAAA---TCAC-TCG-TAA--CAATCC---GTAACTA--TCGTA--AA---C-TGGTC-G-CAA-GA-ACA-C--G----TA-A--ACTG--CTCTTA--A--GAA-TCCG--TA-A-AACACT-CGTAAAAAACGTTTTTAAA--CGAAT-CTTTGC-GGT--TAGTTT-A-CGAT-AT--GT-TACGGATAATT----TACGAG-T--TGTTTACGNATTAT--T--ACGAA------C-GCC--------TAA----GTG-ATA------TTTAC-----GAT-TTCA-----TTCGCG--TCGGATT-A--CAATCGCTTT-ACGGAT---TGTT-C-AGAGTCATT-AAGA-GC-ACTTTAC--GTA-A---TATAGACACGATTACTTTACGAGTACTTTTGGGC--TAGTGAAAGGAG----CAGTT-GT---A-----GAAATTGCTGAT--ACAA--TTTT-AATCTGTACCATTC-----------T-GTTCCA-AGTAA---TG----TCA-GTT-G-TCGA-A-TGA---TTA-T-------GC---AT-------AGCCAATTTCGAACACTTTTG-AGTCAAA-----AA----CGTA-CAC-------AA--------TC------------G---TAACTAACTCCCG----AC--TA---TTCGTAACAG--------------CA--CGTT-----ATC-AACACGT-TAAC--------AGGT-CGTGATGTAC-ACGTA-AA--AGC--------TAA-----GGTA--AAT-CGTA------ACTT-TC-C---GTAAAGTACTCGTAATAAT--CCC---TAAAA--AGCTCGTAAAA-TG-TCGTAAA-------------TT-GCT-C---GTA---TT-TA-T-C-GTGT-TCAC----TCG--AAACAA-ATCGT----AAATT-------GTT-----CGCCGCA---AATACATCGCAAGAAC------TC-----G-TA---------------------ATAAAC---CGTAA-ATGG--CC-CGTA-AA-TACT----CTTA-AAT-CGTT---CTTAAATAGCTCTTTAA-AGTG-TC-TGAATCGTAAC-AATCCG-TGT----ACTT-TTACGGAT----TTG-TAG-AATACGT-AAG-----GAT-CCGT------AA----------GAAAAATCCGTGAGTGTGA
finalCons : CCCCCTTCACACTCA-CG-GATTTTTC-TTACG-AGTCCTT-ACGG-A-TCTC--CGACT-CGTAGTCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTTCCGTAAA---TCAC-TCG-TAA--CAATCC---GTAACTA--TCGTA--AA---C-TGGTC-G-CAA-GA-ACA-C--G----TA-A--ACTG--CTCTTAA----GAA-TCCG--TA-A-AACACT-CGTAAAAAATGTTTTTAAA--CGAAT-CTTTGC-GGTT--AGTTT-A-CGAT-AT--GT-TACGGATAATT----TACGAG-T--TGTTTACGNATTATT----ACGAA------C-GCC--------TAA----GTG-ATA------TTTAC-----GAT-TTCA-----TTCGCG--TCGGATT-A--CAATCGCTTT-ACGGAT---TGTT-C-AGAGTCATT-AAGAG-C-ACTTTACGTA-------TATAGACACGATTACTTTACGAGTACTTTTGGGC--TAGTGAAAGGAG----CAGTTG-T---A-----GAAATTGCTGAT--ACAA--TTTT-AATCTGTACCATGCTGTTCCAA-------------GTAA---TG----TCA-GTT-G-TCGA-A-TGA---TTA-T-------GC---AT-------AGCCAATTTCGAACACTTTTG-AGTCAAA-----AA----CGTA-CACAATC---------------------------G---TAACTAACTCCCA----AC--TA---TTCGTAACAGC--------------A--CGTT-----ATC-AACACGT-TAAC--------AGGT-CGTGATGTAC-ACGTA-AA--AGC--------TAA-----GGTA--AAT-CGTA------ACTT-TCC----GTAAAGTACTCGTAATAAT--CCC---TAAAA--AGCTCGTAAAA-TG-TCGTAAA-------------TT-GCT-C---GTA---TT-TA-T-C-GTGT-TCAC----TCGA--AACAA-ATCGT----AAAT--------GTT-----CGCCGCA---AATACATCGCAAGAACTCGTAA---------------------------------TAAAC---CGTAA-ATGG--CC-CGTA-AA-TACT----CTTA-AAT-CGTTCT---TAAATAGCTCTTTAA-AGTG-TC-TGAATCGTAAC-AATCCG-TGT----ACTT-TTACGGAT----TTG-TAG-AATACGT-AAG-----GAT-CCGT------AA----------GAAAAATCCGTGAGTGTGA
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|20 ): GATTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
Unaligned ( gi|24 ): AATTTCCATGACTTCCGAGCTTTGTCGAAAAAATAAAAATCGGATTAGTTCTACAGCAATGAAATGCTAAAACTACAA
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 111 111111111111111 222222 11111111 222222 11111 11111 1 1111 1 11 22222 333333333333333333 1111 222222222222222 2222222222222222222222222222222 111 111111111111111 11111111 11111111 11111 111111 11111 2222222222222 111 11111 1111 111111 1111111 11111 3333333333333333333333 111 11111111 111111 1111111111
lowQualScore : 4 4 2 3 3 3 7 55 3 7777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 777 4 3 55 88888888 55 55 000 3 3 3 7 4 4 55 8888 4 55 2 55 0 99999 3 55 7 3 4 555555555555555 4 4 66 4 4 4 66 4 0 9999 4 55 1 99999 555555 4 66666666 9999 8 333333 11111 5 22222 2 66 5 66 5 888 88 5 5 5 1 66 1111 66 0 66 11 0 66 9999 44 777 00000 2 66 66 4 222222222222222222 1 6666 666 1111 3 3 3 666 000000000000000 666 3 5 99999 7777 3 7777777777777777777777777777777 666 7777 55 111 999999999999999 55 99999 4 0 4 66666666 4 8 4 55 66666666 11111 66 4 222222 5 33333 0 4 4 55 777 0 6666 4 4 4 2222222222222 4 4 777 4 222 88888 3 3333 888 4 4 9999 8 333333 777 5555555 11111 4 9999999999999999999999 777 0 4 888 4 4 222 8888 5 4 4 77777777 4 3 3 3 0 3 3 7777 3 7777 6 3 0 3 88888 44 555555 4444444444 1
lowQualScore : . . . . . . . .. . ............................................................................................................................... ... . . .. ........ .. .. ... . . . . . . .. .... . .. . .. . ..... . .. . . . ............... . . .. . . . .. . . .... . .. . ..... ...... . ........ .... . ...... ..... . ..... . .. . .. . ... .. . . . . .. .... .. . .. .. . .. .... .. ... ..... . .. .. . .................. . .... ... .... . . . ... ............... ... . . ..... .... . ............................... ... .... .. ... ............... .. ..... . . . ........ . . . .. ........ ..... .. . ...... . ..... . . . .. ... . .... . . . ............. . . ... . ... ..... . .... ... . . .... . ...... ... ....... ..... . ...................... ... . . ... . . ... .... . . . ........ . . . . . . . .... . .... . . . . ..... .. ...... .......... .
lowQualScore : 0 0 1 6 6 6 3 00 6 0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 000 0 6 00 33333333 00 00 000 6 6 6 3 0 0 55 5555 0 55 3 55 3 55555 6 00 3 6 0 999999999999999 4 4 11 4 4 4 11 4 7 4444 0 55 0 33333 666666 4 11111111 4444 9 999999 11111 0 55555 0 99 0 99 0 888 66 0 0 7 4 11 1111 11 0 66 66 7 11 4444 66 888 66666 0 11 11 4 666666666666666666 4 1111 444 4444 6 6 6 444 555555555555555 444 6 1 11111 7777 6 2222222222222222222222222222222 444 7777 00 444 888888888888888 00 11111 0 7 0 11111111 4 9 4 55 11111111 11111 11 4 888888 0 11111 1 0 0 55 000 9 2222 0 0 0 0000000000000 0 0 000 0 222 88888 9 9999 666 4 4 4444 9 888888 888 7777777 11111 4 7777777777777777777777 888 1 4 000 4 4 222 5555 8 0 0 22222222 3 3 3 3 8 3 3 7777 3 1111 7 3 3 3 33333 33 444444 6666666666 2
consensus : CCCCCTTCACACTCA-CG-GATTTTTC-TTACG-AGTCCTT-ACGGA-TCTCCGA--CT-CGTAGTCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTTCCGTAAA---TCAC-TCG-TAA--CAATCC---GTAACTA--TCGTA--AA---C-TGGTC-G-CAA-GA-ACA-C--G----TA-A--ACTG--CTCTTA--A--GAA-TCCG--TA-A-AACACT-CGTAAAAAA--CGTTTTTAAA--CGAA-TCTTTGC-GGT--TAGTTT-A-CGAT-AT--GT-TACGGATAATT----TACGAG-T--TGTTTACGNATTAT--T--ACGAA------C-GCC--------TAA----GTG-ATA------TTTAC-----GAT-TTCA-----TTCGCG--TCGGATT-A--CAATCGCTTT-ACGGAT---TGTT-C-AGAGTCATT-AAGA-GC-ACTTT--AC--GTA--TATAGACACGATTACTTTACGAGTACTTTTGGGC--TAGTGAAAGGAG----CAGTT-GT---A-----GAAATTGCTGAT--ACAA--TTTT-AATCTGTACC------ATG-C-----T-GTTCCA-AGTAA---TG----TCA-GTT-GTCGA-ATGA---TTA-------T-------GC---ATAGCCAATTTCGAACACTTTTG-AGTCAAA-----AA----CGTA-CAC-------AA--------TC------------G---TAACTAACTCCC----GAC--TA---TTCGTAACAG--------------CA--CGTT-----ATC-AACACGT-TAAC--------AGGT-CGTGATGTAC-ACGTA-AA--AGC--------TAA-----GGTA--AAT-CGTA------ACTT-TC-C---GTAAAGTACTCGTAA-TAA-T--CCC---TAAAA--AGCTCGTAAAA-TG-TCGTAA-A-------------TT-GCT-C---GTA-TT---TA-T-C-GTGTTCAC----TCG--AAAC-AA-ATCGT----AAA-TGTT-----CGCCGCA---AATACATCGCAAGAAC------TC-----G-TA---------------------ATAAAC---CGTAA-ATGG--CC-CGTA-AA---TACT----CTTA-AAT-CGTT---CTTAAATAGCTCTTTAA-AGTG-TC-TGAATCGTAAC-AATCCG-TGT----ACTT-TTACGGAT----TTG-TAG-AATACGT-AAG-----GAT-CCGT------AA----------GAAAAATCCGTGAGTGTGA
Reference ( family-971 ) : CCCCCTTCACACTCA-CG-GATTTTTC-TTACG-AGTCCTT-ACGGA-TCTCCGA--CT-CGTAGTCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTTCCGTAAA---TCAC-TCG-TAA--CAATCC---GTAACTA--TCGTA--AA---C-TGGTC-G-CAA-GA-ACA-C--G----TA-A--ACTG--CTCTTA--A--GAA-TCCG--TA-A-AACACT-CGTAAAAAA--TGTTTTTAAA--CGAA-TCTTTGC-GGT--TAGTTT-A-CGAT-AT--GT-TACGGATAATT----TACGAG-T--TGTTTACGNATTAT--T--ACGAA------C-GCC--------TAA----GTG-ATA------TTTAC-----GAT-TTCA-----TTCGCG--TCGGATT-A--CAATCGCTTT-ACGGAT---TGTT-C-AGAGTCATT-AAGA-GC-ACTTT--AC--GTA--TATAGACACGATTACTTTACGAGTACTTTTGGGC--TAGTGAAAGGAG----CAGTT-GT---A-----GAAATTGCTGAT--ACAA--TTTT-AATCTGTACC------ATG-C-----T-GTTCCA-AGTAA---TG----TCA-GTT-GTCGA-ATGA---TTA-------T-------GC---ATAGCCAATTTCGAACACTTTTG-AGTCAAA-----AA----CGTA-CAC-------AA--------TC------------G---TAACTAACTCCC----AAC--TA---TTCGTAACAG--------------CA--CGTT-----ATC-AACACGT-TAAC--------AGGT-CGTGATGTAC-ACGTA-AA--AGC--------TAA-----GGTA--AAT-CGTA------ACTT-TC-C---GTAAAGTACTCGTAA-TAA-T--CCC---TAAAA--AGCTCGTAAAA-TG-TCGTAA-A-------------TT-GCT-C---GTA-TT---TA-T-C-GTGTTCAC----TCG--AAAC-AA-ATCGT----AAA-TGTT-----CGCCGCA---AATACATCGCAAGAAC------TC-----G-TA---------------------ATAAAC---CGTAA-ATGG--CC-CGTA-AA---TACT----CTTA-AAT-CGTT---CTTAAATAGCTCTTTAA-AGTG-TC-TGAATCGTAAC-AATCCG-TGT----ACTT-TTACGGAT----TTG-TAG-AATACGT-AAG-----GAT-CCGT------AA----------GAAAAATCCGTGAGTGTGA
gi|1 : TTTTTC-TTACGTAGTCCTT-ACGGAATCTCAGAGACT-CGTAGTCA
gi|1 : CG-TAA--C----C---GTAACTA--TCGTA--AAACTT-TGGTC-G-CAA-AA-TCATC--GGGTATA-A--AC----CTGTAACGA--AAA-TCCG--TATA-AACACTTCGTAAAACG--CG-----------AAA-TCTTTGCTGGTCTTAGTTTTA-CGAT-ATTAATATACGGATAACTCCCTTACGAGGT--TGTTTACGGACAAT-----ACGAAAACTGCT-GCTATAAAATATAA----GTG-ATAATCCT-TCCACCCTCGGGTGTTCACCTATTTTTCG--T---AT--A--AAATCGCTTT-ACGGATAACTGTAAC-AGAGTTATTTAAGATGCCACTTTTAAC---TC--TATAGACACGATTAC---------ATTTCCCGGCAATAGTGAAAAGAGAACGCAGTTAGT---AACAATGAAA---CTTATCCACAAGATTTT-AATCTGTG--------AGG-C-----C-GAT----GGTAAATGTGGTTCTTA-GTTTGTCGA-ATGACATTTAC------T-------GCCGTATAGCCAATT-CGGACACTGTTGTAGTTAAA-----AA----AATAATACTT-----AACACCCATTTC------------GAAATAACTAACTCCGGTGAAAC--TACATTTAATAACAGTAACACCAAGAAAACA--CGTTTAACTATC-AACACTG-CAAC--------AGGTACGTGATGTACAACGTAGAA--AGCATAGATATTAATACAGGGTATGAGTGCGTAAACTCCATTT-TC-CGTGGTAAAGTACTC-CAA-TAA-TTCTCC---TAAGATGAACCCGTAAAATTG-TTCTAA-AATATGGATTAAGGTT-GCT-CATAATA-TTG--TAGT-C-GTGTTCACTACTTCAACAAAC-AA-ATCGTGGAGAAATTGTTTAGTGCTCCGCACCCAATACATCGCAAGAACCTTACATC-----G-TAGTATCACCGTGAGAACTCGTAATAAAC---CGTAA-ATGG--CC-CGTA-CA---TGCT----CATA-AAT-CA------CTAAGTAGGTCTTTAA-AGTG-TC-TGAATTGTAAC-TACCCG-TGT----ACTT-TTACGGAT----TTG-TAG-AATACTT-TAG-----GAT-CCGT------AA----------GAAAatcgcaaacagtacgctattttcgtaaatcagctggtcgtcggatagaatcgttaagtagtcctcttcagtgcatgtctcggcacacagctgcgttcaggacagtgctctgtgaaaggttgggagacatcctgatatctatatttaaatagagcatgtcaaccaacttaatggtttttacgaagctctgtccacggatttcgtgtcccatcccgttaaattaccccgatttaaacctcaacgtaaccgtaactatcgtaaaactttggtcgcaaaatcatcgggtataaacctgtaacgaaaatccgtataaacacttcgtaaaacgcgaaatctttgctggtcttagttttacgatattaatatacggataactcccttacgaggttgtttacggacaatacgaaaactgctgctataaaatataagtgataatccttccaccctcgggtgttcacctatttttcgtataaaatcgctttacggataactgtaacagagttatttaagatgccacttttaactctatagacacgattacatttcccggcaatagtgaaaagagaacgcagttagtaacaatgaaacttatccacaagattttaatctgtgaggccgatggtaaatgtggttcttagtttgtcgaatgacatttactgccgtatagccaattcggacactgttgtagttaaaaaaataatacttaacacccatttcgaaataactaactccggtgaaactacatttaataacagtaacaccaagaaaacacgtttaactatcaacactgcaacaggtacgtgatgtacaacgtagaaagcatagatattaatacagggtatgagtgcgtaaactccattttccgtggtaaagtactccaataattctcctaagatgaacccgtaaaattgttctaaaatatggattaaggttgctcataatattgtagtcgtgttcactacttcaacaaacaaatcgtggagaaattgtttagtgctccgcacccaatacatcgcaagaaccttacatcgtagtatcaccgtgagaactcgtaataaaccgtaaatggcccgtacatgctcataaatcactaagtaggtctttaaagtgtctgaattgtaactacccgtgtacttttacggatttgtagaatactttaggatccgtaagaaa
gi|10 : tttttcttacgtagtccttacggaatctcagagactcgtagtcaatcgcaaacagtacgctattttcgtaaatcagctggtcgtcggatagaatcgttaagtagtcctcttcagtgcatgtctcggcacacagctgcgttcaggacagtgctctgtgaaaggttgggagacatcctgatatctatatttaaatagagcatgtcaaccaacttaatggtttttacgaagctctgtccacggatttcgtgtcccatcccgttaaattaccccgatttaaacctcaaCCCCCTTCACACTCA-CA-AAT---------------CCTT-ACGGA-TCTCCGA--CT-CGTAGTCA
gi|10 : ataA-TCTGATTG-A-AACA----GTAAAAAAAATGT------A--CGAG-TGTGTGC-GAT--CTGT------GAT-GA--GT-TACGGAT-ACC----GACGAG-T--GATTTACGAATACT--T--GCGAatcgcaagtattcgtaaatcactcgtcggtatccgtaactcatcacagatcgcacacactcgtacattttttttactgtttcaatcagataccgtgccatgtaaagcgtaaattctgagcccaaccgtgaattttttgacatgtcaattttttttttatgattgtccacggatttcgttttccgtaaatcactcgtaacaatctgtaactatcgtaaactggtcgcaagaacacgtaaacactgctcttatgaatccgtaaaacactcgtaaaaagtg
gi|10 : atacccccttcacactcacaaatccttacggatctccgactcgtagtcaaTTTTCCGTAAA---TCAC-TCG-TAA--CAATCT---GTAACTA--TCGTA--AA---C-TGGTC-G-CAA-GA-ACA-C--G----TA-AACACTG--CTCTTA--T--GAA-TCCG--TA-A-AACACT-CGTAAAAAG--TGaccgtgccatgtaaagcgtaaattctgagcccaaccgtgaattttttgacatgtcaattttttttttatgattgtccacggatttcgttttccgtaaatcactcgtaacaatctgtaactatcgtaaactggtcgcaagaacacgtaaacactgctcttatgaatccgtaaaacactcgtaaaaagtg
gi|11 : atacccccttcacactcacaaatccttacggatctccgactcgtagtcaatcgcaagtattcgtaaatcactcgtcggtatccgtaactcatcacagatcgcacacactcgtacattttttttactgtttcaatcagataccgtgccatgtaaagcgtaaattctgagcccaaccgtgaattttttgacatgtcaattttttttttatgattgtccacggatttcgCGAG-T--TGTTTACATACTAT--T--ACGAA------C-GCC--------TAA----GTG-ATA------TTTAC-----GAT-TTCA-----TTTGCG--TCGGATT-A--CAATCGCTTT-ACGGAT---TGTT-C-AGAGTCATT-AAGA-GC-ACTTT--AC--GTA--TATA--CACGATTACTTTACGAGTA-TTTTGGGC--TAGTGAAAGGAG----CAGTT-GT---A-----GAAATTGCTGAT--AAAA--TTTT-AATATGTACC-------TGTC-----T-GTTCTA-AGTAA---TG----TCA-GTT-GTCGA-ATGA---TTA-------T-------GC---ATAGCCAATTTCGAACACTTTTG-AATCAAA-----AG----CGCA-CAC-------AA--------TC------------G---TAACTAAC-CCC----AAC--TC---TTCGTAACAG--------------CA--CGTT-----ATC-AACACGT-TAA
gi|12 : TTTTCCGTAAA---TAAT-TTACTAA--AAA-CT---TT--CTT--TCAT------------GTC-T-TAA-TA-AC-----G----TA-A--ACTG--CTCGTA--AAAGAA-TCCG--TT-TTAACATT-AGTAAAA----CTTTTTTAAAAACAAA-G--TTAC-GGT--TA-CTT-ATCAATTAT--GT-TGCA-ATAGTT----TACGTG-T--TATATACAGATTAT--TTAAC-AA------T-GCG--------TAG----GTG-ATA------TTTAC-----GAT-TACA------TCAAG--TCGGG-T-AGCCAACAGTCTC-ACGGAT---TGT----ATAGTCACT-AA
gi|13 : cgtaaaggttccggaaagtggtgaacattttttacgatgtcaaaaaatcaacgattgtccaacggattttaTTT--A-----A--TATAGACACGATTACTT-ACGAGTACACTGTGGC--TAGTAAAAGGAG----CAGTT-AT---AAAAG-GAAAT-GCTGAT--ACAA--TTTT-AACCTGTACCTCTCATATG-CCACGGT-GCTCTA-AGTAA---TG----CCA-GTT-GTCGA-ATTA---TTA-------T-------AC---ATAGCCAATTTCAAATACTTTTG-AGT-ATA-----AA----CATA-TAT-------AA--------TC------------G---TAACTAACTCCC----GAA--TA---TTCGTAACAG--------------CA--CG-------------------TAAC--------AGCT-CGTAATTTAC-ACGTA-AA--AGT--------TAG-----GATA--AAT-CGTA------A
gi|14 : gct--AGC--------TAT-----GCTA--AGT-CGTA------ACTT----A---GTAATGTACTCGTAA-CAA-T--CCC---TATAA--AGCTCGTAAAC-TG-TCGTAA-A-------------TT-GCT-C---GTA-TT---TA-TTC-GTTTTCAC----TCG--AAAG-AA-ATCGT----AAA-TGTT-----CGCCGTA---AATGCATTGCAAGAAC------TC-----G-TA---------------------ATAAAT---CGTAA-ATGG--TC-TGTA-AA---TACT----C--------CGTT---CTTAAATAACTTTTTAA-AGTG-TC-TAAATCGTAAC-AATCCA-TGT----ACTT-TTACGGA-------------------T-AAG-----GAT-TCGTAAA---AA----------AAAAAATCCGTGAtnnnnnnnnnnnnnnnnnnnnnnnnncct
gi|15 : CCCCCTTCACATTCA-CG-GATTTTTC-TAACG-AGTCCTT-ACGGA-TCTCCGA--CT-CGTAGACAa
gi|15 : CCGTAAA---TCAT-TCG-TAA--CAAACC---GTAACTA--TCGTA--AA---C-TGGTC-G-CAA-Gnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaacatttttatgattgtcgaatttaacccgtaaatcattcgtaacaaaccgtaactatcgtaaactggtcgcaag
gi|16 : cccccttcacattcacggatttttctaacgagtccttacggatctccgactcgtagacannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaacatttttatgattgtcgaatttaacTACC------ATG-C-----T-GTTCCA-AGTAA---TG----CCA-GTT-GTCAA-ATGA---TTATACATTGT-------AC---ATGGCCAATTTCGAACACTTTTG-AGTCAAA-----AA----TGTA-AAC-------TA--------TCGTGCATGTACATG---TAACTAACTCCC----GAC--TA---TTCTTAACAG--------------TA--CGTT-----AT---ACATGTATAACCATGTAAAAGAT-CGTGATTTAC-GCTTA-AA--A
gi|17 : aA-TGCT-----AACCTTA---AATGCTTTGCAAGAA-------TCAAGTAG-CA---------------------ATAAAC---CTTAA-ATGG--CCTCATA-T----TGCT----CGTA-AATACACT------AAACA-TTATTTAA-AGTG-TC-TAAATCGTAAC-AATCCGATGT----ACGT-ATACTGAT----TTG-AAGTAATGCGT-AAA-----GAT-TCGTCAGAAAAA----------GAAAAATCC-TGAGTGT
gi|18 : TAA---TG-----CATGTT-GTCAAGATGA---TTA-------TTCATTTGAC---ATGGCCAATTTCGA-CACTTTTG-AGTCAAATGATTAACTATCGTG-CAT-------GT--------CT------------G---TAACTAATTCCC----GACTTTA---TTT-TAAC----------------TA--CGTT-----
gi|19 : gcgttcatagtCCACCTTCATACACA-CG-GATTTT-C-TTACG-AGTCATT-TCGGATTTTCCGA--CT-CGAAGTCAcatgtttaccttgttatata
gi|2 : aCCCCCTTCACACTCA-CG-GATTTTTC-TTACG-AGTCCTT-ACGGA-TCTCCGA--CT-CGTAGTCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTTCCGTAAA---TCAC-TCG-TAA--CAATCT---GTAACTA--TCGTA--AA---C-TTGTT-G-CAA-GA-ACA-C--G----TA-A--ACTG--CTCTTA--A--GAA-ACCG--TA-A-AACACT-CGTAAAAAA--TGTTTTTAAA--CGAA-TCTTTGC-GGT--TAGTTT-A-CGAT-AT--GT-TACAGATAATT----TACGAG-T--TGTTTACGTATTAT--T--ACGAA------C-GCC--------TAT----GTG-ATA------TT-AC-----GAT-TTCA-----TTTGTG--TCGGATT-A--CAGTCGCTTT-A-GGAT---TGTT-C-AGAGTCATT-AAGA-GC-ACTTT--ACATGTACGTATAGACACGATTACTTTACGAGTATTTTTGGGC--TAGTGAAAGGAG----CAGTT-GT---A-----GAAATTGCTGAT--GCAA--TTTT-AATCTGTACC------ATT-C-----T-GTTTCA-AGTAA---TG----TCA-GTT-GTCGA-ATGA---TTA-------T-------GC---ATAGCCAATTTCGAACACTTTTG-AGTCAAA-----AA----CGCA-CAC-------AA--------TC------------G---TAACTAACTCTC----AAC--TA---TTCGTAACAG---------------A--CGTT-----ATC-AACACGT-TAAC--------AGGT-CGTGATGTAC-ACGTA-AA--AGC--------TAA-----GGTA--AAT-CGTA------ACTT-TC-C---GTAAAGTACTCGTAA-TAA-T--CCC---TAAAA--ATCTCGTAAAA-TG-TCGTAA-A-------------TT-GTT-C---GTA-TT---TA-T-C-GTGTTCAC----TCG--AAAC-AA-ATCGT----AAATTGTT-----TGCCGCA---AATACATCGCAAGAAC------TT-----G-TG---------------------ATAAAA---CGTAA-ATGG--CC-CGTA-AA---TACT----CTTA-AAT-CATT---CTTAAATAGCTCTTAAA-TGTG-TC-TGAATCGTAGC-AATCCG-TGT----ACTT-TTACGGAT----TTG-TAG-AATACGT-AAG-----GAT-CCGT------AA----------G-AAAATCCATGAGTGTGAaatcaagccggtaaatatctcgtcgactagtgttttatactttcatttgccacgactcgcagcaccactcgtaag
gi|21 : CCCTCTTCATACTCA-TG-GATTTTTC-GTACT-AGTAATT-ACGGA-TCTCCGA--CT-CGTAGTCA
gi|21 : taT-TTACGAATGCTTTTGATTG-ACTACG---AGTCGGAGAT-CCGT------AATTACTAGTACGAAAAATCCATGAGTATGAatcaaaagcattcgtaaatcactcgtcgg
gi|22 : taccctctTCTTTAG-AGTG-TC-TAAATCGTAAC-AATCCG-TGT----ACTT-TTACTGGT----TTG-TGG-AATACAT-AAG-----AAT-ACGT------AA----------GAAAAATATGGGAATGtcactcgtcgg
gi|23 : TAGTTCTTAAA-AGTG-TG-TAAATCGTAAC-AATTCG-TGT----ACTT-TTACGGAT----TTG-TGG-AATACGT-AAG-----GAT-CCGT------AA----------ACAAAATCCG
gi|25 : TTCACACTCA-AG-AATTTT-C-TTAAG-AGTCGTT-ATTGA-TCTCCGA--TT-CGTAGTCA
gi|26 : accacaG--------------CA--CGTT-----ATC-AACACGT-TAAC--------AGGT-CGGTATGTAC-ACGTA-AA--AGC--------TAA-----GGTA--AAT-CGTA------atttgcaagcatt
gi|3 : CCCCCTTCACA-TCA-CG-GATTTTTC-TAACG-AGTCCTTAACGGA-TCTCCGA--CTCCGTAG
gi|3 : cATT----TTTAGAAT-TGTCGAATTTAAAC-GCCCGGTAA-AGTG-TCATG--TCGTAAC-AAGCCG-Tgacatccgcaaagcaattcgtgcaaatactctcggaatccgttagacaactcgcacagctcgccaactcgaaggaatgtcaaaaaacaatttttagaattgtcgaatttaaacgcccggtaaagtgtcatgtcgtaacaagccgtaactaaaccgtaaaactgtcgacaaagagacacgtacagccgtactcctaagaaatccgtagaacactcgtaaaaaattattttaaacgaattctttgcggtagtttacgatatgttacagataatttacgcaccgtgtttacgtattattacgaacggcctaagtgcatatttacgatttcatttgcggtccggattaacaatcgctttggcggattgttcaagagtcattaaagacaactttacgtaagacacgatactgttcgagtattgtgggctgtgaaagggcagttgtagaatgctgatacaattttaaatctgtaccattctggttccatagtaatgttcagttgtcgaatgatatgcatagccattcgacactttgagtgaaaaacgcacacacgtaactaactccactaattccgtaacagcacgcgtaatcaaacacgtttacaggtcatgatgtacaacgtaaaacagctaaggtaatcgcaacttatcgcgtaaataccgtaataatccctaaagcgcgtaaaatgttcgtaaatggctcatatgtatccgtttcactcggacaacatcgtaaatgtgtgcgcaaatacatcgcaagaatcgtaataaaccgtaacatggccgtaaactactcttaaatcactctaaatagctcttaaaagtgttctgaatcgtagtaaccggtgtacttttacggatttattagaatacgtgaaggataacgtaagaaaaatccgcagtgtga
gi|3 : ccccccttcacatcacggatttttctaacgagtccttaacggatctccgactccgtaggacatccgcaaagcaattcgtgcaaatactctcggaatccgttagacaactcgcacagctcgccaactcgaaggaatgtcaaaaaacaGTAAAGTGTCATGTCG-TAA--CAAGCC---GTAACTAAACCGTA--AAA--C-TG-TC-GACAAAGAGACA-C--G----TACA--GCCGTACTCCTA--A--GAAATCCG--TA-G-AACACT-CGTAAAAAA--TTATTTTAAA--CGAATTCTTTGC-GG---TAGTTT-A-CGAT-AT--GT-TACAGATAATT----TACGCA-CCGTGTTTACGTATTAT--T--ACGAA------CGGCC--------TAA----GTGCATA------TTTAC-----GAT-TTCA-----TTTGCGGTCCGGATTAA--CAATCGCTTTGGCGGAT---TGTT-CAAGAGTCATT-AAAG-ACAACTTT--AC--GTA-----AGACACGA-TACTGTTCGAGTA-TTGTGGGC--T-GTGAAAGG-G----CAGTT-GT---A-----GAA--TGCTGAT--ACAA--TTTTAAATCTGTACC------ATT-C-----TGGTTCCATAGTAA---TGT---TCA-GTT-GTCGA-ATGA----TA-------T-------GC---ATAGCCA--TTCG-ACAC-TTTG-AGTGAAA-----AA----CGCA-CAC-------A----------C------------G---TAACTAACTCC------AC--TAAT-TCCGTAACAG--------------CACGCGTA-----ATCAAACACGT-TTAC--------AGGT-CATGATGTACAACGTA-AAACAGC--------TAA-----GGT---AAT-CGCA------ACTTATCGC---GTAAA-TAC-CGTAA-TAA-T--CCC---T--AA--AGCGCGTAAAA-TGTTCGTAA-A-------------TG-GCT-C---ATA-TG---TA-TCC-GT-TTCAC----TCG---GAC-AACATCGT----AAA-TGTG-----TG-CGCA---AATACATCGCAAGAA-------TC-----G-TA---------------------ATAAAC---CGTAACATGG---C-CGTA-AAC--TACT----CTTA-AAT-CACT---C-TAAATAGCTCTTAAA-AGTGTTC-TGAATCGTAGT-AACCGG-TGT----ACTT-TTACGGAT----TTATTAG-AATACGTGAAG-----GATAACGT------AA----------GAAAAATCCGC-AGTGTGAaactaaaccgtaaaactgtcgacaaagagacacgtacagccgtactcctaagaaatccgtagaacactcgtaaaaaattattttaaacgaattctttgcggtagtttacgatatgttacagataatttacgcaccgtgtttacgtattattacgaacggcctaagtgcatatttacgatttcatttgcggtccggattaacaatcgctttggcggattgttcaagagtcattaaagacaactttacgtaagacacgatactgttcgagtattgtgggctgtgaaagggcagttgtagaatgctgatacaattttaaatctgtaccattctggttccatagtaatgttcagttgtcgaatgatatgcatagccattcgacactttgagtgaaaaacgcacacacgtaactaactccactaattccgtaacagcacgcgtaatcaaacacgtttacaggtcatgatgtacaacgtaaaacagctaaggtaatcgcaacttatcgcgtaaataccgtaataatccctaaagcgcgtaaaatgttcgtaaatggctcatatgtatccgtttcactcggacaacatcgtaaatgtgtgcgcaaatacatcgcaagaatcgtaataaaccgtaacatggccgtaaactactcttaaatcactctaaatagctcttaaaagtgttctgaatcgtagtaaccggtgtacttttacggatttattagaatacgtgaaggataacgtaagaaaaatccgcagtgtga
gi|4 : ccccccttcacatcacggatttttctaacgagtccttaacggatctccgactccgtaggacatccgcaaagcaattcgtgcaaatactctcggaatccgttagacaactcgcacagctcgccaactcgaaggaatgtcaaaaaacaatttttagaattgtcgaatttaaacgcccgCCCCCTTCACACTCA-CA-GATTTTTC-TTATG-AGTCCTT-ACGGA-TCTCCAA--CT-CATAGTCA
gi|4 : aGTAAA---TCAC-TCG---------TCG---GTATCCA--T--TAATAA---C-TCGTC-A-C----A-ACT-C--G----CA-C--AC-A--CTCGTA--A--GGA-TCCA--TG-A-AAatcgcaggcatttgtaaatcactcgtcggtatccattaataactcgtcacaactcgcacacactcgtaaggatccatgaaagttgggctaaatttcttgacatgtcaaaaaaaaattatgattgtccacaaattttattttccgtaaatcactcgtaactatcataaactggttgcaagaacacgtaaactgctcttaagaattcgtaaaacactcgtaaaaaaaattttttaacgaatctttgcagttagtttacgatttgttagagatagttttcgagttgtttacagatcattgcgaatgcctaagtgatatttacgatctctttcacatcgggttacgatcgctttacagattgttcagagttattaagagcacttcaagtatagacatgattactttacgagtacatttgggctagtgaaaggagcagttttagaaattgctgatacaattttaatctgtaccatgctgttccaagtaatgtcagttgttgaatgattatacatagccaatttcgaacacttttgagtcaaaaacgtaaacaatcgtaattaactcccaactattcataacagcatgttatcaacatgttaacatgttgtgatgtacacgtaaaaactaaggtaaattgtaactttccgtaaagtactcgtaataatccctaaaagctcgtaaaatgtcataaattgttcataattatccgtgttcactcggaacaaatcgtaaatgtttaccgcaaatacatcgcaagaactcatagtaaatactcttaaatcattcttaaatagctctttaaagtggctgaatcgtaacaatctgtgtacttttacggattcatagaatccgtaagaaaaatctgtgag
gi|4 : acccccttcacactcacagatttttcttatgagtccttacggatctccaactcatagtcaatcgcaggcatttTTTTCCGTAAA---TCAC-TCG-TAA--C-------------TA--TCATA--AA---C-TGGTT-G-CAA-GA-ACA-C--G----TA-A--ACTG--CTCTTA--A--GAA-TTCG--TA-A-AACACT-CGTAAAAAA--AATTTTTTAA--CGAA-TCTTTGC-AGT--TAGTTT-A-CGAT-TT--GT-TAGAGATAGTT----TTCGAG-T--TGTTTACAGATCAT--T--GCGAA------T-GCC--------TAA----GTG-ATA------TTTAC-----GAT-CTCT-----TTCACA--TCGGGTT-A--CGATCGCTTT-ACAGAT---TGTT-C-AGAGTTATT-AAGA-GC-ACTTC--AA--GTA--TA--GACATGATTACTTTACGAGTACATTTGGGC--TAGTGAAAGGAG----CAGTT-TT---A-----GAAATTGCTGAT--ACAA--TTTT-AATCTGTACC------ATG-C-----T-GTTCCA-AGTAA---TG----TCA-GTT-GTTGA-ATGA---TTA-------T-------AC---ATAGCCAATTTCGAACACTTTTG-AGTCAAA-----AA----CGTA-AAC-------AA--------TC------------G---TAATTAACTCCC----AAC--TA---TTCATAACAG--------------CA--TGTT-----ATC-AACATGT-TAAC--------ATGT-TGTGATGTAC-ACGTA-AA--AAC--------TAA-----GGTA--AAT-TGTA------ACTT-TC-C---GTAAAGTACTCGTAA-TAA-T--CCC---TAAAA---GCTCGTAAAA-TG-TCATAA-A-------------TT-GTT-C---ATA-AT---TA-T-CCGTGTTCAC----TCG--GAAC-AA-ATCGT----AAA-TGTT-----TACCGCA---AATACATCGCAAGAAC------TC-----A-TA----------------------------------------------GTA-AA---TACT----CTTA-AAT-CATT---CTTAAATAGCTCTTTAA-AGTG-GC-TGAATCGTAAC-AATCTG-TGT----ACTT-TTACGGAT----TCA-TAG-A----------------AT-CCGT------AA----------GAAAAATCTGTGAGgttgggctaaatttcttgacatgtcaaaaaaaaattatgattgtccacaaattttattttccgtaaatcactcgtaactatcataaactggttgcaagaacacgtaaactgctcttaagaattcgtaaaacactcgtaaaaaaaattttttaacgaatctttgcagttagtttacgatttgttagagatagttttcgagttgtttacagatcattgcgaatgcctaagtgatatttacgatctctttcacatcgggttacgatcgctttacagattgttcagagttattaagagcacttcaagtatagacatgattactttacgagtacatttgggctagtgaaaggagcagttttagaaattgctgatacaattttaatctgtaccatgctgttccaagtaatgtcagttgttgaatgattatacatagccaatttcgaacacttttgagtcaaaaacgtaaacaatcgtaattaactcccaactattcataacagcatgttatcaacatgttaacatgttgtgatgtacacgtaaaaactaaggtaaattgtaactttccgtaaagtactcgtaataatccctaaaagctcgtaaaatgtcataaattgttcataattatccgtgttcactcggaacaaatcgtaaatgtttaccgcaaatacatcgcaagaactcatagtaaatactcttaaatcattcttaaatagctctttaaagtggctgaatcgtaacaatctgtgtacttttacggattcatagaatccgtaagaaaaatctgtgag
gi|5 : acccccttcacactcacagatttttcttatgagtccttacggatctccaactcatagtcaatcgcaggcatttgtaaatcactcgtcggtatccattaataactcgtcacaactcgcacacactcgtaaggatccatgaaagttgggctaaatttcttgacatgtcaaaaaaaaattatgattgtccacaaattttaTT-TC-C---GTAAATAATCCGTA---AA-T--CACTTGTAACA--ATC-CGT-AAC-TA-TCGTAA-A-------------CT-GGT-C---GTA-
gi|5 : ttgtccacggatttcctTCCGTAAA---TCAC-TTG-TAA--CAATCC---GTAACTA--TCGTA--AA---C-TGGTC-G-TAA-GA-ACA-C--G----TA-A--ACTG--CTCTTA--A--GAA-TCCG--TA-A-AACACT-CGTAAAAA---TGTTTTTAAA--CGAA-TCTTTGC-GGT--TAGTTT-A-CGAT-AT--GT-TACAGAAAATT----TACGAG-T--TGTTGACGTATTATATT--ACGAA------C-GCC--------TAA----GTG-ATAGATCTATTTAC-----GAT-TTCA-----TTTGCG--TCGGATT-A--CAATCGTTTT-ACGGAT---TGTT-C-AGAGTCATT-AAGA-AC-ACTT---AC--GTA--TA--GACACGATTACTTTACGAGTATTTTTGGGC--TAGTAAAAGGAG----CAGTT-GT---A-----GAAATTGCTGAT--ACAA--TTTT-AATCTGTTCC------ATG-C-----------------AA---TG----TCA-GTT-GTCGA-ATGA---TT--------T-------GC---ATAGCCAATTTCGAACACTTTTG-AGTCAAA-----AA----CGCA-CAC-------AA--------TC------------G---TAACTAAC-CCC----AAC--TA---TTCGCAACAG--------------TA--CGTT-----ATC-AATACGT-TAAC--------AGGT-CGTGATGTAC-ACGTA-AA--AGC--------TAA-----GATA--AAT-CGTA------A-TT-TC-C---GTAAAGTACTCGTAA-TAA-T--CCC---TAAAA--AGCTCGTAAAA-TG-TCGTAA-A-------------TTCGCT-C---GCA-TT---TA-T-CCGTGTTCAC----TCG--GAAC-AA-ATCGT----AAA-TGTT-----TGCCGCA---AATACTTCGCAATAAC-------C-----G-TA----------------------TGAAC---CATAA-ATGG--CC-CGTA-AA---TACT----CTTG-AAT-CGTT---CTTAAATAACTCTTAAA-AGTG-TC-TGAATCGTAGC-AATCCG-TGT----AGTT-TTACGGAT----TTG-TAG-AATACGT-AAG-----GAT-CCGT------AA----------GAAAAATCCGagaacacgtaaactgctcttaagaatccgtaaaacactcgtaaaaatgtttttaaacgaatctttgcggttagtttacgatatgttacagaaaatttacgagttgttgacgtattatattacgaacgcctaagtgatagatctatttacgatttcatttgcgtcggattacaatcgttttacggattgttcagagtcattaagaacacttacgtatagacacgattactttacgagtatttttgggctagtaaaaggagcagttgtagaaattgctgatacaattttaatctgttccatgcaatgtcagttgtcgaatgatttgcatagccaatttcgaacacttttgagtcaaaaacgcacacaatcgtaactaaccccaactattcgcaacagtacgttatcaatacgttaacaggtcgtgatgtacacgtaaaagctaagataaatcgtaatttccgtaaagtactcgtaataatccctaaaaagctcgtaaaatgtcgtaaattcgctcgcatttatccgtgttcactcggaacaaatcgtaaatgtttgccgcaaatacttcgcaataaccgtatgaaccataaatggcccgtaaatactcttgaatcgttcttaaataactcttaaaagtgtctgaatcgtagcaatccgtgtagttttacggatttgtagaatacgtaaggatccgtaagaaaaatccg
gi|6 : ttgtccacggatttccttttccgtaaataaCCCTTCACACTTAATGAGATTTTTCCTTACG-AGTCCTT-ACGGA-TCTCCGA--CT-CGTAGTCA
gi|6 : tTTTCCGTAAA---TTAC-CCG-TAAATCACTCGTTAGTAACTA--TCGTA--AA---CATGGTCCG-CAAAGA-ACA-CTAG-----A-G--ACTG--TTTCTA-----GAA-TCCG--TACA-AACACT-CGTAAAAAG--------------CGAA-TCTTTGC-GGT--TAGTTT-A-CGAT-AT--AT-TACGGATAATT----TACGGG-T--TGTTTACGGATCAT--T--ACGAA------C-GCC--------TAATTAAGTG-ATA------TTTAC-----GGT-TTCA-----TTTGCG--TCGGATT-A--CAATCGCTTT-ACGGAT---TGTA-C-AGAGTCATT-AAGA-GC-ACTTT--AC--GCA--TA--GACACGATTACTTT------------GGGC--TAGTGAAAGGAG----CAGTT-TT---A-----GTAATTGCTGAT--ACAA--TTTT-AATCTGTACC------AT-------------------TAA---TG----TCA-GTT-GTCGA-ATGA---TTA-------T-------GT---ATAGCCAATTTCGGACACTTTTG-AGTAAAA-----AA----TGTA-CAC-------AA--------TC------------G---TAACTAACTCCC----AAC--TA---TTCGTAACAG--------------Catcgcaagcattcgtaaaccacccgtcgatannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntttccgtaaattacccgtaaatcactcgttagtaactatcgtaaacatggtccgcaaagaacactagagactgtttctagaatccgtacaaacactcgtaaaaagcgaatctttgcggttagtttacgatatattacggataatttacgggttgtttacggatcattacgaacgcctaattaagtgatatttacggtttcatttgcgtcggattacaatcgctttacggattgtacagagtcattaagagcactttacgcatagacacgattactttgggctagtgaaaggagcagttttagtaattgctgatacaattttaatctgtaccattaatgtcagttgtcgaatgattatgtatagccaatttcggacacttttgagtaaaaaatgtacacaatcgtaactaactcccaactattcgtaacagc
gi|7 : tcccttcacacttaatgagatttttccttacgagtccttacggatctccgactcgtagtcaatcgcaagcattcgtaaaccacccgtcgatannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTTT--A-----A--TATAGACACGATTACTT-ACGAGTACACTGTGGC--TAGTAAAAGGAG----CAGTT-TTGAAA-----GAAAATGCTGAT--ACAA--TTTT-AACCCGTACCTCTCATATG-CCATGGT-GCTCTA-AGTAA---TG----CCA-GTT-----------------------------------------------TCAAATACTTTTG-AGT-AAA-----AA----CATA-CAGTGTATAAAA--------TC------------G---TAACTAAGTCCC----AAA--TA---TTCGTAACA------------------------------C-AACG----TAAC--------AGCT-CGTAATTTAC-ACGTA-AA--AGC--------TAA-----GCTA--AAT-CGTA------ACTT-TA-----GTAATATACTCGTAA-CAA-T--CCC---TAAAA--AGCTCGTAAAA-TG-TAATTA-A-------------TT-GGT-C---ATA-TTCTTTA-A-A-GTGT---C----T---------AA-ATCGT----AA
gi|7 : agacgctTCGTAACTAAGT--CCC-----AAA--TATTCGTAACA-CA-ACGTAACA----------------GCT-C---GTAATT---TA---C-ACGTAAAA----GCT--AAGCTAA-ATCGT----AAC-T-TT-----AGT-------AATATA---------C------TC-----G-TA---------------------ACAATC---CCTAA-AAAG--CT-CGTA-AAATGTAAT----T----AAT-TGGT---C----ATA-TTCTTTAA-AGTG-TC-TAAATCGTAAT-AATCCG-TGT----ACTT-TTACTGGT----TTG-TGG-AATAAAT-AAG-----AAT-ACGT------AA----------GAAATATATAGGAATGTGAtaatccgtgtacttttactggtttgtggaataaataagaatacgtaagaaatatataggaatgtgaa
gi|8 : agacgcttttaatatagacacgattacttacgagtacactgtggctagtaaaaggagcagttttgaaagaaaatgctgatacaattttaacccgtacctctcatatgccatggtgctctaagtaatgccagtttcaaatacttttgagtaaaaacatacagtgtataaaaCCCCCTTCACACTCT-CG-GATTTTTC-TTGCG-AGTCCTT-ACGGA-TCTCCGA--CT-CGTAGTCAa
gi|8 : taCCGTAAA---TCAC-TCG-TAA--CAATCC---GCAACAA--TCGTA--AA---C-TGGTC-G-CAA-GA-ACA-C--G----TA-A--ACTG--CTCCTA--A--GAA-TCCG--TA-A-AACACT---TCAAAAA--TGTTTTTTAA--CGAA-TC----------------T-A-CGAT-AT--GT-TACAGATAATT----TACGAG-T--TGTTTACGTATTA------ATGGACATTTTC-GGC--------TGG----GTGAACA------TTTAC-----nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnataacccgtaaatcactcgtaacaatccgcaacaatcgtaaactggtcgcaagaacacgtaaactgctcctaagaatccgtaaaacacttcaaaaatgttttttaacgaatctacgatatgttacagataatttacgagttgtttacgtattaatggacattttcggctgggtgaacatttaca
gi|9 : tacccccttcacactctcggatttttcttgcgagtccttacggatctccgactcgtagtcannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnataacGTA-TCGTAA-CAA-T--CCC---TTTAA--GCTTCGTAAAC-TG-TCGTAA---------------TT-GCTTC---GTA-TT---TATT-C-GT-TTCACG---TCG--AAGA-AA-TTCGT-----AA-TG-T-----CGCCGT----AATGCATTGC-AGAAT------TC-----GTTA---------------------ATAATTTTGCGTAA-ATGGGTTC-TGTATAA---TACCGTGGCTTA-AA-----------TAAAT--CTTTTTAACAGGT-TC-T-AATCGTAACAAATCCA-TATAATAACTTATTACG---------G-TAG--AT-CGT-AA--------------------AA----------AAAAAACC--TGAATGTGAa
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|20 ): GATTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
Unaligned ( gi|24 ): AATTTCCATGACTTCCGAGCTTTGTCGAAAAAATAAAAATCGGATTAGTTCTACAGCAATGAAATGCTAAAACTACAA