lowQualScore : 11111111111111111111111111111111 111111111111111111111
lowQualScore : 1 555555555555555555555555555555555 11 333333333333333 5555555555555555555555555555555555555555555555555 111 11111111111111111111111111111111 1 6666666666666666666666666666 2222 3333333333333333 1 11 666666666666666666666666666666 1 777777777777777777777777777777777777777777777777777777777777777777777777777 1 2222 11111 111 1111 2 33 2 444444444444444444444 2222 1 6666
lowQualScore : 6 9 0 222222222222222222222222222222222 1 11 0 777777777777777 22 0000000000000000000000000000000000000000000000000 444 3 7 99999999999999999999999999999999 3 1 2 1111111111111111111111111111 6 0000 99 2222222222222222 7 5 1 22 3 88 222222222222222222222222222222 5 1 1 8888 5 999999999999999999999999999999999999999999999999999999999999999999999999999 1 6 999 7 3 4 1111 00000 99 2 444 4 1 99 8888 2 3 5 1 9 00 2 4 3 666666666666666666666 2 0000 8 0 3 1 2 2 2222 3
lowQualScore : . . . ................................. . .. . ............... .. ................................................. ... . . ................................ . . . ............................ . .... .. ................ . . . .. . .. .............................. . . . .... . ........................................................................... . . ... . . . .... ..... .. . ... . . .. .... . . . . . .. . . . ..................... . .... . . . . . . .... .
lowQualScore : 0 5 0 555555555555555555555555555555555 4 00 8 222222222222222 22 6666666666666666666666666666666666666666666666666 000 0 7 00000000000000000000000000000000 3 0 5 0000000000000000000000000000 5 0000 22 5555555555555555 0 7 4 99 6 00 333333333333333333333333333333 7 6 7 0000 7 111111111111111111111111111111111111111111111111111111111111111111111111111 4 5 444 3 0 0 7777 00000 55 1 555 0 2 33 4444 0 0 0 4 3 44 8 0 0 000000000000000000000 8 8888 0 8 0 8 8 8 4444 0
consensus : GAACTGGTCGATTT-GAAACT-GTAAATTA-AAAAA--AATCATA--TGNCA--TGCATCAT--TAGT---AA--ACATCG-ATTAGTATA-TCGAGANGACGTCCCA------G-TATTCA-TGATTT---A-------TCATG---GAAAGNTCNAAA--T-TCT----AAAAN--------------CCATAG-AATATGACACCAAACGTGTACTT----TTTTC-GCACT----TTTC-AATGTATAC---CAT--GTTT--CTNAT-GATGTAA-TTCTGTA-CG-CAAT-ATACATGTGACATT-TCTA------TTT---G------TGTGATT-GCTGCGTGCA-TCGA-TGTGAANTT--------TTTTN-T------CAT-ATTCAT---C--------TTCAGTGTACTTTTATAAAAATGAAC---ACTATGCTTTGTT--TAGA-TGGAATAC-ATAAAG---AA-----CTG--TAAAAT--ATGCAG-TTTCCNGATTCTTNTTTATTTCATCATTTATCCACT-GATTAAAATGCATGTATCACTTTTCCCT-------CCTTTATTCT---ATTATGAAA-AA-GAACAATCTTAAAGAAAG---TATCCGAAACA
Reference ( gi|1 ) : GAACCGTTCGATTT-GAAACTCGTATATTA-AAAAA--AATCATT--TGGCA--TGCATCAT--TAGT---AA--ACATCG-ATTAGTATA-TTGAGAGAACGTCTCA------G-CATGAA-TGGTTT---A-------TCATG---GAAAGTTCAAAA--CCTCT----AAAAA--------------TCATAG-AATATAACACCAAACGTGTA--T----TTTTC-G-ACT----GTT--AATGTATAC---CAT--GTTT--CTAAT-GATGTAT-TTCTTTA-CA-CAAT-ATACAGGTGACATT-TCTA---G--TTT---G------TATGATT-GCTGCTTACA-TCGA-TGTGAATTT--------CTTTT-T------TAT-ATTCAT---C--------TTAAGTGTATTTTTATAATAATGAACATTACTATGCTTTGTT--TAGA-TGGATTAC-ATAAAT---AA-----CTG--TAGAAT--TTGCAG-TTCCTAGATTCTTGTTTGTTTTATTATCTATCCATTGGATT-TAATGCATGCATC-CTTTTTTCC-------ACT----------ATTGTGACA-TA-GAATAATCATAGAGAGAGAAAAATCTGAAACA
gi|5 : GAACTGATCGATTT-GAAGCT--TAAATTACAAAAA--AGAAATA--T--CA--TGCATCAT--TAGT---AA--A-ATCGTAATAATATA-TCTAAATGACGTCCTG------T-TATTCC-TGATTC---A-------TTATG---GAAAGGTC
gi|2 : ttttcacaaagaaatacacctgcaattgtacagtgtatgaattaaatctaaacatttttaagtatccactaagtaatgatgagtttgtaattacagtctggaaagaatcataattatgtataactccactgtcatgaaacaAACTGGTCGATTT-GAAACTTA-AGAT----AAAA--GATTAGA--TATCC--TGAATCAT--C-GTTCAAA--AC-TTA-AT-AGTATA-TCAAGATAAC---CCA------G-CATTCA-TGATTT---ACAATGTATCATG---AAAAGGTCTAAA--T---T----AAAAAAAAAAAAAAAAACACTATAG-AATGTGGCACCAAACGTGCA--TTTTGTTTTCTA-ATT----TTC--CATGTTTACATTCAT--ATTT-----AC--ATGTAA-TTCTGCA-TG-CAAT-GTACACGTAATTTT-TTTGTTTGTTTTT---G------TGCGATTCGCTGCGTGCA-CAAA-AGTGAAATT--------TTCGA-T------CAT--TTC-----C--------TTCAG--------------AATGG-----ACTGTGCTTGGTT-------TGGACTGA-ATAAATG--AA-----C--------AT--T--CAG-TATTTGGATTCTGATTTATTTTATTATTTATCCATT-GATT-AAACGCATt
gi|15 : AACTGGTAGGTTT-GAAACT--TAAATCA-AACAATTAATTATAAATGTCA--TTCATTAT--TAGT---AAAGACAT---AATAGTATACCTG-------GCCTCATTACCCG-TATTCA-TGATTT---T-------TCATG---Gatagcttctc
gi|4 : tatgtctccactgtcatgcaaaattGTTCGATTTCAAAACT-GTATATTA-AAGCA----TCATT--TGGCAAATGTATCAT--TAG---------CATCG-ATTAGTATT-TTGAGAGGACTTTCCA------G-CATGAAATGGATT---A-------TCATG---GAAAGTTCAAAAACCCTCTTCCTAAAAT--------------CCATAGCAATATAACACCAAACGTGTA--T----TTT-C-G-ACT----GTTT-AATGTATAC---CAT--GTTT--CTAAT-GATGTATATTCTTTAGCA-CCA--ATACAGGTGACATT-TCTA------TTT---G-------ATGATT-GCTGCTTACAATCGAATGTGAATTTT-------CTTTT-T------TAT-ATTTAT---C--------TTAAGTGTATTTTTATAATAATGAACATTACTATGCgcaggcc
gi|3 : aactgTCATT---GAAA--TATATCACAATAGT---CA--A-ATCGCATTTGTATA---AAAAGAAC--TTCA------GGTATTCA-TGATTTTTCA-------TCATGTACGCAAGTTCCACA--T-TCT----AAAAG--------------T-ATAG-AATATGACACCAGA-GTATATTT----TTTTC-GCACTTCTCCTT---ACATATGG---CATACGTTT--CTTTTCGAAATAA-TTCTGTG-CACCAAT-ATGT--GTGAC--T-TTTA-------TT---G------TGTGATT-GCTGCGTGCT-T--A-TGTGAA-----------ATGTT-T------GATCCTTCAT---C---------------TACTTTTA-AAAACTGA-----ACTATG---TGTTTATAGA-TGGAAGACAATAAG----AA-----CTA--TGAAATACTACCAG-TTTCCAGATTCTGATTTATTTT
gi|13 : cttccacttttAACGTATACTT----TTTTC-TTACT----TTTCCAAT-TATAC----AT--GTTT--CGTAG-GTTGCAA-TTTTGTA-CG-CAGC-ACACATGTGACATTCTCT--------------------TGTGATT-TCTGCGTGCA-CCGA-TGT-AATAT---------TTTA-T------CAT-TTTC-T---C--------TACAGTGTACTTGTATAAAAATTA-----ACTATGACTTCTT--TAGA-T
gi|8 : AT--GTCTATCTA---GATGCAA-TTATGTA-CA-TAAT-ATACATGTGACAG-----A---A--AGT---G------TCTGATT-GCTGAGTGT--TCGA-TG-GGATTT--------TTTTTAT------CAT--TTCAT---C--------TTCGGTGTAATTTTATAAAACTGAAC-------TGTTTTCTC--TACA-TGAAATAT-ATTGAA---AA-----CTG--TAGAAT--GTGCAT-TTCC-AGATT
gi|7 : tttatagaaaaaaa--GTTT--CTGAT------AT-TTTATTC-CAGCAG-----CGGGTGA-ATGACCTA---G--TTT---GATTTCATTTGATT-GCTGCGTACA-TTGA-TGTGAAATTGTCGATCACTTCA-TGAGAAATAT-ATACATGTACG-------TTCAGTATGCTTTTACAGTAAAGAAC--TAC-AT---TTGTT--TAGACTGAATTAT-GTAAAA---AAAAAAATTA--CAGAGC--ATGCAG-TTCCCAGATTC
gi|6 : -CA-CAATGAT-CATGTCAAAAT-TCTT---C--TTTTGAG------TGTGATT-GCTGCGTGCA-TTGA-AGTGAAATG--------TTTGA-C------CA--ATTCAT---GAGAAAGTATTCAATACACTTCTGCAAAAATGAAC-----TATGCTTTGTA--TAGACTGAA--AA-AAAAATTACAA-----ATGCATAAAAC--ATGCAG-CTTCCATATTCT-G---GTTTTA---------CAT-GGATT-AAATGCAT
gi|12 : tatttaatgttaagttaattgtcgGTTTTGTT--TAGA-TGGAATAC-ATAAAG---AA-----CTG--TAAAAT--ATGCAG-TTTCCTGATT-TTCTTTATTTCATCATTTATCTACT-GATTAAAATGCATGTATCACTTTTCCCT-------CCTTTATTCTA--ATTATGAAA-AA-G-ACAATCTTAAAGAAAG---TATCCGAAACAa
gi|11 : TTTGTT--TAGA-TGGAATAC-ATAAAG---AA-----CTG--TAAAAT--ATGCAG-TTTCCTGATT-TTCTTTATTTCATCATTTATCTACT-GATTAAAATGCATGTATCACTTTTCCCT-------CCTTTATTCTGA-ATTATGAAA-AA-GAACAATCTTAAAGAAAG---TATCCGAAACAggtaaaatagtgttc
gi|14 : tTTGTT--TAGA-TGGATTAC-ATAAAT---AA-----CTG--TAGCAT--TTGCAGTTTCCTAGATT-TTGTTTGTTTTATTATCT-TCCATTTGATT-TAATGCATGCATC-CTTTTTCC---------CT----------ATTGTGACATTA-GAATAATCATAGAGAGAGAAAAATCTGAAACAggtaaaatagtgttca
gi|10 : TTGTT---AGA-TGGAATAC-ATAAAG---AA-----CTG--TAAAAT--ATGCAG-TTTCCTGATT-TTCTTTATTTCATCATTTATCTACT-GATT-AAATGCATGTATG-CACTTTTCCCTCCTTTATTTCTGA-----ATTATGAAA-AAGGAACAATCTTAAAGAAAG---TATCCGAAACAttccgaatgaatagtggttca
gi|9 : tgTTGTT---AGA-TGGAATAC-ATAAAG---AA-----CTGT-TAAAAT--ATGCAG-TTTCCTGATT-TTCTTTATTTCATCATTTATCTACT-GATTAAAATGCATGTATCACTTTTCCCT-------CCTTTATTTCTGAATTATGAAA-AA-GAACAATCTTAAAGAAAG---TATCCGAAACAggtaaaatagtgttca
1 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|16 ): TTTTTGCACAAAGATATAATCCTCCACTTGTACCGTGTTTCAGTTAAGTCTACACTATCATAAGCATTAATCTAGTCGCAGTGAACTTTTAGTTACAGTCTCAAACGAATCATAAAACATATTTATCCACCGACATG
Alignments
lowQualScore : 22 111 2222 11111111111111 111 1111111 22222222222 111 4444444 555555555555555 1 22222 22 22222 111 11 11 22222222222222 55555555555555555555555555555555 333333 111111 1 1 11 33 222
lowQualScore : 8 8 88 99 3 0 444 0000 1 99 99 77777777777777 000 1 9999999 6 88888888888 111 1 1 2222222 666666666666666 0 33333 11 0 22222 3 444 11 44 6 5 3 666 1 22 5 00 5 44444444444444 33 5 55 3 5 1 0 5 44 55555555555555555555555555555555 5 0 0 3 3 888888 7 44 000000 0 55 88 3 3 44 5 1 5 5 9 5 3 7 66 44 6 6 333
lowQualScore : . . .. .. . . ... .... . .. .. .............. ... . ....... . ........... ... . . ....... ............... . ..... .. . ..... . ... .. .. . . . ... . .. . .. . .............. .. . .. . . . . . .. ................................ . . . . . ...... . .. ...... . .. .. . . .. . . . . . . . . .. .. . . ...
lowQualScore : 0 0 00 44 8 6 888 2222 0 22 22 88888888888888 555 0 5555555 7 77777777777 777 0 0 5555555 888888888888888 0 88888 44 6 88888 2 000 00 44 7 7 0 777 4 99 7 55 0 99999999999999 55 0 44 4 0 0 2 0 00 55555555555555555555555555555555 0 2 2 9 8 888888 4 66 555555 2 00 66 6 6 66 0 0 7 7 0 7 6 3 55 22 7 7 333
consensus : GAACTGGT-CGATTT-GAAACT-GTAA-ATTAAAAAA--AATCATA--TGNCA--TGCATCAT--TAGT---AA--ACATCG-ATTAGTATATCGAGANGACNTC----CCGGCATTCA-TGATTT---A-------TCATG---GAAAGNTCNAAA-------TTCTAAAAA------------CCATAG-AATATGACACCAAACGTGTATTT--TTTTCGTACTTTTC-A--ATGTATAC---CAT--GTTTCTNAT-GATGTA-ATTCTGT-A-CGCAAT-ATACATGT-GACATT-TCTA------TTT---GTGTGATT-GCTGCGTGCA-TCGA-TGTGAAATTT-TTNATCA--------------TATTCA--------T---C-TTCAGTGTACTTTTATAANAATGAAC---ACTATGCTTTGTT--TAGATGGAAT------ACATAA--AGAACTG--TAAAATA-TG-CAGTTTCC-NGATTCTTNTTTATTTCATCATTTATCCA-CT-GATTAAAATGCATGTAT-CACTTTTCCCTCCTTTA-TTCTGAATTATGAAA-AA-GAACAATCTTAAAGAAAG---TATCCGAAACA
Reference ( family-960 ) : GAACTGGT-CGATTT-GAAACT-GTAA-ATTAAAAAA--AATCATA--TGNCA--TGCATCAT--TAGT---AA--ACATCG-ATTAGTATATCGAGANGACGTC----CCAGTATTCA-TGATTT---A-------TCATG---GAAAGNTCNAAA-------TTCTAAAAN------------CCATAG-AATATGACACCAAACGTGTACTT--TTTTCGCACTTTTC-A--ATGTATAC---CAT--GTTTCTNAT-GATGTA-ATTCTGT-A-CGCAAT-ATACATGT-GACATT-TCTA------TTT---GTGTGATT-GCTGCGTGCA-TCGA-TGTGAANTTT-TTTNTCA--------------TATTCA--------T---C-TTCAGTGTACTTTTATAAAAATGAAC---ACTATGCTTTGTT--TAGATGGAAT------ACATAA--AGAACTG--TAAAATA-TG-CAGTTTCC-NGATTCTTNTTTATTTCATCATTTATCCA-CT-GATTAAAATGCATGTAT-CACTTTTCCCTCCTTTA-TTCT--ATTATGAAA-AA-GAACAATCTTAAAGAAAG---TATCCGAAACA
gi|1 : GAACCGTT-CGATTT-GAAACTCGTAT-ATTAAAAAA--AATCATT--TGGCA--TGCATCAT--TAGT---AA--ACATCG-ATTAGTATATTGAGAGAACGTC----TCAGCATGAA-TGGTTT---A-------TCATG---GAAAGTTCAAAAC------CTCTAAAAA------------TCATAG-AATATAACACCAAACGTGTA--T--TTTTCG-ACTGTT--A--ATGTATAC---CAT--GTTTCTAAT-GATGTA-TTTCTTT-A-CACAAT-ATACAGGT-GACATT-TCTAG-----TTT---GTATGATT-GCTGCTTACA-TCGA-TGTGAATTTC-TTTTTTA--------------TATTCA--------T---C-TTAAGTGTATTTTTATAATAATGAACATTACTATGCTTTGTT--TAGATGGATT------ACATAA--ATAACTG--TAGAATT-TG-CAGTTCCT-AGATTCTTGTTTGTTTTATTATCTATCCA-TTGGATT-TAATGCATGCAT-CCTTTTTTCC------A---CT--ATTGTGACA-TA-GAATAATCATAGAGAGAGAAAAATCTGAAACA
gi|10 : TTGTT---AGATGGAAT------ACATAA--AGAACTG--TAAAATA-TG-CAGTTTCC-TGATT-TTCTTTATTTCATCATTTATCTA-CT-GATT-AAATGCATGTATGCACTTTTCCCTCCTTTATTTCTGAATTATGAAA-AAGGAACAATCTTAAAGAAAG---TATCCGAAACA
gi|11 : tgTTTGTT--TAGATGGAAT------ACATAA--AGAACTG--TAAAATA-TG-CAGTTTCC-TGATT-TTCTTTATTTCATCATTTATCTA-CT-GATTAAAATGCATGTAT-CACTTTTCCCTCCTTTA-TTCTGAATTATGAAA-AA-GAACAATCTTAAAGAAAG---TATCCGAAACAggtaaaatagtgttca
gi|12 : tGTTTTGTT--TAGATGGAAT------ACATAA--AGAACTG--TAAAATA-TG-CAGTTTCC-TGATT-TTCTTTATTTCATCATTTATCTA-CT-GATTAAAATGCATGTAT-CACTTTTCCCTCCTTTA-TTCTA-ATTATGAAA-AA-G-ACAATCTTAAAGAAAG---TATCCGAAACAggtaaaatagtgttca
gi|13 : AACGTATACTT--TTTTCTTACTTTTCCA--AT-TATAC----AT--GTTTCGTAG-GTTGCA-ATTTTGT-A-CGCAGC-ACACATGT-GACATTCTCT--------------TGTGATT-TCTGCGTGCA-CCGA-TGT--AATAT-TTTATCA--------------TTTTC---------T---C-TACAGTGTACTTGTATAAAAATTA-----ACTATGACTTCTT--TAGATggtaaaatagtgttc
gi|14 : TTGTT--TAGATGGATT------ACATAA--ATAACTG--TAGCATT-TG-CAGTTTCCTAGATT-TTGTTTGTTTTATTATCT-TCCATTT-GATT-TAATGCATGCAT-C-CTTTTTCC----------CT--ATTGTGACATTA-GAATAATCATAGAGAGAGAAAAATCTGAAACA
gi|15 : AACTGGT-AGGTTT-GAAACT--TAA-ATCAAACAATTAATTATAAATGTCA--TTCATTAT--TAGT---AAAGACAT---AATAGTATACC----TGGCCTCATTACCCGTATTCA-TGATTT---T-------TCATG---GGCAGGCCttccgaatgaatagtggttca
gi|2 : tatgtctccactgtcatgcaaaattAACTGGT-CGATTT-GAAACT--TAAGAT---AAAA--GATTAGA--TATCC--TGAATCAT--C-GTTCAAA--AC-TTA-AT-AGTATATCAAGATAAC-------CCAGCATTCA-TGATTT---ACAATGTATCATG---AAAAGGTCTAAA-------TTAAAAAAAAAAAAAAAAACACTATAG-AATGTGGCACCAAACGTGCATTTTGTTTTC-TAATTTTC-C--ATGTTTACATTCAT--ATTT---AC--ATGTA-ATTCTGC-A-TGCAAT-GTACACGT-AATTTT-TTTGTTTGTTTTT---GTGCGATTCGCTGCGTGCA-CAAA-AGTGAAATTT-TCGATCA--------------T-TTC-------------C-TTCAG--------------AATGG-----ACTGTGCTTGGTT--TGGACTGAAT------AAAT-----GAAC----------A-TT-CAGTATTT-GGATTCTGATTTATTTTATTATTTATCCA-TT-GATT-AAACGCATATA---GCTTCTC
gi|3 : TCAT---TGAAA--TATATCACAATAGT---CA--A-ATCGCATTTGTATA---AAAAGAACTT----CAGGTATTCA-TGATTTTTCA-------TCATGTACGCAAGTTCCACA-------TTCTAAAAG------------T-ATAG-AATATGACACCAGA-GTATATTT--TTTTCGCACTTCTC-CTTACATATGG---CATACGTTTCTTTTCGAAATA-ATTCTGT-G-CACCA--ATATGTGT-GAC--T-TTTA------TT----GTGTGATT-GCTGCGTGCT-T--A-TGTGAAATGT-TTGATC---------------------------------C-TTCA-TCTACTTTTA-AAAACTGA-----ACTATG---TGTTTATAGATGGAAG------ACAATA--AGAACTA--TGAAATACTACCAGTTTCC-AGATTCTGATTTATTT
gi|4 : cttccacttttAACTGGTTCGATTTCAAAACT-GTAT-ATTAAAGCA----TCATT--TGGCAAATGTATCAT--TAG---------CATCG-ATTAGTATTTTGAGAGGACTTT----CCAGCATGAAATGGATT---A-------TCATG---GAAAGTTCAAAAACCCTCTTCCTAAAAT------------CCATAGCAATATAACACCAAACGTGTA-----TTTTCG-ACTGTTT-A--ATGTATAC---CAT--GTTTCTAAT-GATGTATATTCTTT-AGCACCA--ATACAGGT-GACATT-TCTA------TTT---G-ATGATT-GCTGCTTACAATCGAATGTGAATTTTCTTTTTTA--------------TATTTA--------T---C-TTAAGTGTATTTTTATAATAATGAACATTACTATGCt
gi|5 : GAACTGAT-CGATTT-GAAGCT--TAA-ATTACAAAA--AAGAA-A--TATCA--TGCATCAT--TAGT---AA--A-ATCGTAATAATATATCTAAATGACGTC----CTGTTATTCC-TGATTC---A-------TTATG---GAAAGGTC
gi|6 : ttttcacaaagaaatacacctgcaattgtacagtgtatgaattaaatctaaacatttttaagtatccactaagtaatgatgagtttgtaattacagtctggaaagaatcataattatgtataactccactgtcatgaaacaTA-ATT--GTCG-CACAATGAT-CATGTCAAAATT-CTTC------TTTTGAGTGTGATT-GCTGCGTGCA-TTGA-AGTGAAATGT-TTGACCA---------------ATTCATGAGAAAGT---A-TTCAATACACTTCTGCAAAAATGA-----ACTATGCTTTGTA--TAGACTGAAA------AAAAAATTACAAATGCATAAAACA-TG-CAGCTTCC-ATATTCTGGTTTt
gi|7 : tatttaatgttaagtATT-TC-A------TTT---G----ATT-GCTGCGTACA-TTGA-TGTGAAATTG-TCGATCACTTCATGAGAAATATATACA--------TGTACGTTCAGTATGCTTTTACAGTAAAGAAC-----TACA-TTTGTT--TAGACTGAATTATGTAAAAAAA--AAAATTA--CAGAGCA-TG-CAGTTCCC-AGATTCtacatggattaaatgcata
gi|8 : gtttctgatattttattccagcagcgggtgaatgacctagtttg-GATGCA-ATTATGT-A-CATAAT-ATACATGT-GACA----GAA------AGT---GTCTGATT-GCTGAGTGT--TCGA-TGGGATTTTT-TTTATCA--------------T-TTCA--------T---C-TTCGGTGTAATTTTATAAAACTGAAC-------TGTTTTCTC--TACATGAAAT------ATATTG--AAAACTG--TAGAATG-TG-CA-TTTCC-AGATT
gi|9 : tttatagaaaaaaaatgtctatctaTTGTT---AGATGGAAT------ACATAA--AGAACTGT-TAAAATA-TG-CAGTTTCC-TGATT-TTCTTTATTTCATCATTTATCTA-CT-GATTAAAATGCATGTAT-CACTTTTCCCTCCTTTATTTCTGAATTATGAAA-AA-GAACAATCTTAAAGAAAG---TATCCGAAACA
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): TTTTTGCACAAAGATATAATCCTCCACTTGTACCGTGTTTCAGTTAAGTCTACACTATCATAAGCATTAATCTAGTCGCAGTGAACTTTTAGTTACAGTCTCAAACGAATCATAAAACATATTTATCCACCGACATG
Alignments
lowQualScore : 22 111 2222 11111111111111 111 1111111 22222222222 111 4444444 555555555555555 1 11 11 22222 111 11 11 22222222222222 44444444444444444444444444444444 333333 111111 1 1 1 222
lowQualScore : 8 8 88 99 3 0 444 0000 1 99 99 77777777777777 000 1 6666666 2 6 88888888888 111 1 1 2222222 777777777777777 0 3 11 0 88 0 22222 3 444 11 44 6 5 3 5 33 5 00 5 44444444444444 33 5 55 3 5 0 0 5 1 33333333333333333333333333333333 5 0 00 0 3 2 555555 7 44 000000 0 55 88 3 3 44 5 1 5 5 9 5 3 1 3 3 2 6 1 6 333
lowQualScore : . . .. .. . . ... .... . .. .. .............. ... . ....... . . ........... ... . . ....... ............... . . .. . .. . ..... . ... .. .. . . . . .. . .. . .............. .. . .. . . . . . . ................................ . . .. . . . ...... . .. ...... . .. .. . . .. . . . . . . . . . . . . . . ...
lowQualScore : 0 0 00 44 8 6 888 2222 0 22 22 88888888888888 555 0 2222222 2 7 77777777777 777 0 0 5555555 000000000000000 0 8 00 8 66 6 88888 2 000 00 44 7 7 0 7 77 7 55 0 99999999999999 55 0 44 4 0 8 2 0 0 55555555555555555555555555555555 0 4 44 2 9 8 666666 4 66 555555 2 00 66 6 6 66 0 0 7 7 0 7 6 7 2 3 5 7 7 7 333
consensus : GAACTGGT-CGATTT-GAAACT-GTAA-ATTAAAAAA--AATCATA--TGNCA--TGCATCAT--TAGT---AAA--CATCG-ATTAGTATATCGAGANGACNTC----CCGGCATTCA-TGATTT---A-------TCATG---GAAAGNTCNAAA-------TTCTAAAAA------------CCATAG-AATATGACACCAAACGTGTATTT--TTTTCGTACTTTTC-A--ATGTATAC---CAT--GTTTCTNAT-GATGTA-ATTCTGT-ACGCAAT-ATACATGT-GACATT-TCTA------TTT---GTGTGATT-GCTGCGTGC-ATCG-ATGTGAAATTT-TTNATCA--------------TATTCA--------T---C-TTCAGTGTACTTTTATAANAATGAAC---ACTATGCTTTGTTTA--GATGGAAT------ACATAA--AGAACTG--TAAAATA-TGC-AGTTTCC-NGATTCTTNTTTATTTCATCATTTATCCA-CT-GATTAAAATGCATGTAT-CACTTTTCCCTCCTTTA-TTCTGA-ATTATGAAAAA-GAACAATCTTAAAGAAAG---TATCCGAAACA
Reference ( family-960 ) : GAACTGGT-CGATTT-GAAACT-GTAA-ATTAAAAAA--AATCATA--TGNCA--TGCATCAT--TAGT---AAA--CATCG-ATTAGTATATCGAGANGACNTC----CCGGCATTCA-TGATTT---A-------TCATG---GAAAGNTCNAAA-------TTCTAAAAA------------CCATAG-AATATGACACCAAACGTGTATTT--TTTTCGTACTTTTC-A--ATGTATAC---CAT--GTTTCTNAT-GATGTA-ATTCTGT-ACGCAAT-ATACATGT-GACATT-TCTA------TTT---GTGTGATT-GCTGCGTGC-ATCG-ATGTGAAATTT-TTNATCA--------------TATTCA--------T---C-TTCAGTGTACTTTTATAANAATGAAC---ACTATGCTTTGTTTA--GATGGAAT------ACATAA--AGAACTG--TAAAATA-TGC-AGTTTCC-NGATTCTTNTTTATTTCATCATTTATCCA-CT-GATTAAAATGCATGTAT-CACTTTTCCCTCCTTTA-TTCTGA-ATTATGAAAAA-GAACAATCTTAAAGAAAG---TATCCGAAACA
gi|1 : GAACCGTT-CGATTT-GAAACTCGTAT-ATTAAAAAA--AATCATT--TGGCA--TGCATCAT--TAGT---AAA--CATCG-ATTAGTATATTGAGAGAACGTC----TCAGCATGAA-TGGTTT---A-------TCATG---GAAAGTTCAAAAC------CTCTAAAAA------------TCATAG-AATATAACACCAAACGTGTA--T--TTTTCG-ACTGTT--A--ATGTATAC---CAT--GTTTCTAAT-GATGTA-TTTCTTT-ACACAAT-ATACAGGT-GACATT-TCTAG-----TTT---GTATGATT-GCTGCTTAC-ATCG-ATGTGAATTTC-TTTTTTA--------------TATTCA--------T---C-TTAAGTGTATTTTTATAATAATGAACATTACTATGCTTTGTTTA--GATGGATT------ACATAA--ATAACTG--TAGAATT-TGC-AGTTCCT-AGATTCTTGTTTGTTTTATTATCTATCCA-TTGGATT-TAATGCATGCAT-C-CTTTTTTCCACT-----------ATTGTGACATA-GAATAATCATAGAGAGAGAAAAATCTGAAACA
gi|10 : TTGTT-A--GATGGAAT------ACATAA--AGAACTG--TAAAATA-TGC-AGTTTCC-TGATT-TTCTTTATTTCATCATTTATCTA-CT-GATT-AAATGCATGTATGCACTTTTCCCTCCTTTATTTCTGA-ATTATGAAAAAGGAACAATCTTAAAGAAAG---TATCCGAAACA
gi|11 : tgTTTGTTTA--GATGGAAT------ACATAA--AGAACTG--TAAAATA-TGC-AGTTTCC-TGATT-TTCTTTATTTCATCATTTATCTA-CT-GATTAAAATGCATGTAT-CACTTTTCCCTCCTTTA-TTCTGA-ATTATGAAAAA-GAACAATCTTAAAGAAAG---TATCCGAAACAggtaaaatagtgttca
gi|12 : tGTTTTGTTTA--GATGGAAT------ACATAA--AGAACTG--TAAAATA-TGC-AGTTTCC-TGATT-TTCTTTATTTCATCATTTATCTA-CT-GATTAAAATGCATGTAT-CACTTTTCCCTCCTTTA-TTCT-A-ATTATGAAAAA-G-ACAATCTTAAAGAAAG---TATCCGAAACAggtaaaatagtgttca
gi|13 : AACGTATACTT--TTTTCTTACTTTTCCA--AT-TATAC----AT--GTTTCGTAG-GTTGCA-ATTTTGT-ACGCAGC-ACACATGT-GACATTCTCT--------------TGTGATT-TCTGCGTGC-ACCG-ATGT--AATAT-TTTATCA--------------TTTTC---------T---C-TACAGTGTACTTGTATAAAAATTA-----ACTATGACTTCTTTA--GATggtaaaatagtgttc
gi|14 : TTGTTTA--GATGGATT------ACATAA--ATAACTG--TAGCATT-TGC-AGTTTCCTAGATT-TTGTTTGTTTTATTATCT-TCCATTT-GATT-TAATGCATGCAT-CCTTTTTCCC-----TA-TTGTGACATT-------A-GAATAATCATAGAGAGAGAAAAATCTGAAACA
gi|15 : AACTGGT-AGGTTT-GAAACT--TAA-ATCAAACAATTAATTATAAATGTCA--TTCATTAT--TAGT---AAAGACAT---AATAGTATACC----TGGCCTCATTACCCGTATTCA-TGATTT---T-------TCATG---GGCAGGCCttccgaatgaatagtggttca
gi|2 : tatgtctccactgtcatgcaaaattAACTGGT-CGATTT-GAAACT--TAAGAT---AAAA--GATTAGA--TATCC--TGAATCAT--C-GTTCAAAA--C-TTA-AT-AGTATATCAAGATAAC-------CCAGCATTCA-TGATTT---ACAATGTATCATG---AAAAGGTCTAAA-------TTAAAAAAAAAAAAAAAAACACTATAG-AATGTGGCACCAAACGTGCATTTTGTTTTC-TAATTTTC-C--ATGTTTACATTCAT--ATTT---AC--ATGTA-ATTCTGC-ATGCAAT-GTACACGT-AATTTT-TTTGTTTGTTTTT---GTGCGATTCGCTGCGTGC-ACAA-AAGTGAAATTT-TCGATCA--------------T-TTC-------------C-TTCAG--------------AATGG-----ACTGTGCTTGGTTTG--GACTGAAT------AAAT-----GAAC----------A-TTC-AGTATTT-GGATTCTGATTTATTTTATTATTTATCCA-TT-GATT-AAACGCATATA---GCTTCTC
gi|3 : TCAT---TGAAA--TATATCACAATAGT---CAA---ATCGCATTTGTATA---AAAAGAACTT----CAGGTATTCA-TGATTTTTCA-------TCATGTACGCAAGTTCCACA-------TTCTAAAAG------------T-ATAG-AATATGACACCAGA-GTATATTT--TTTTCGCACTTCTC-CTTACATATGG---CATACGTTTCTTTTCGAAATA-ATTCTGT-GCACCA--ATATGTGT-GAC--T-TTTA------TT----GTGTGATT-GCTGCGTGC-TT---ATGTGAAATGT-TTGATCC--------------T--TCA--------T---C-T-------ACTTTTA-AAAACTGAAC-----TATG---TGTTTATAGATGGAAG------ACAATA--AGAACTA--TGAAATACTACCAGTTTCC-AGATTCTGATTTATTT
gi|4 : cttccacttttAACTGGTTCGATTTCAAAACT-GTAT-ATTAAAGCA----TCATT--TGGCAAATGTATCAT--TAG---------CATCG-ATTAGTATTTTGAGAGGACTTT----CCAGCATGAAATGGATT---A-------TCATG---GAAAGTTCAAAAACCCTCTTCCTAAAAT------------CCATAGCAATATAACACCAAACGTGTATTT--T---CG-ACTGTTT-A--ATGTATAC---CAT--GTTTCTAAT-GATGTATATTCTTT-A-GCACCAATACAGGT-GACATT-TCTA------TTT---G-ATGATT-GCTGCTTACAATCGAATGTGAATTTTCTTTTTTA--------------TATTTA--------T---C-TTAAGTGTATTTTTATAATAATGAACATTACTATGCt
gi|5 : GAACTGAT-CGATTT-GAAGCT--TAA-ATTACAAAA--AAGAA-A--TATCA--TGCATCAT--TAGT---AAA---ATCGTAATAATATATCTAAATGACGTC----CTGTTATTCC-TGATTC---A-------TTATG---GAAAGGTC
gi|6 : ttttcacaaagaaatacacctgcaattgtacagtgtatgaattaaatctaaacatttttaagtatccactaagtaatgatgagtttgtaattacagtctggaaagaatcataattatgtataactccactgtcatgaaacaTA-ATT--GTCGCACAATGAT-CATGTCAAAATT-CTTC------TTTTGAGTGTGATT-GCTGCGTGC-ATTG-AAGTGAAATGT-TTGACCA---------------ATTCATGAGAAAGT---A-TTCAATACACTTCTGCAAAAATGA-----ACTATGCTTTGTATA--GACTGAAA------AAAAAATTACAAATGCATAAAACA-TGC-AGCTTCC-ATATTCTGGTTTt
gi|7 : tatttaatgttaagtATT-TC-A------TTT---G----ATT-GCTGCGTAC-ATTG-ATGTGAAATTG-TCGATCACTTCATGAGAAATATATACA--------TGTACGTTCAGTATGCTTTTACAGTAAAGAAC-----TACA-TTTGTTTA--GACTGAATTATGTAAAAAAA--AAAATTA--CAGAGCA-TGC-AGTTCCC-AGATTCtacatggattaaatgcata
gi|8 : gtttctgatattttattccagcagcgggtgaatgacctagtttg-GATGCA-ATTATGT-ACATAAT-ATACATGT-GACA----GAA------AGT---GTCTGATT-GCTGAGTGT--TCG-ATGGGATTTTT-TTTATCA--------------T-TTCA--------T---C-TTCGGTGTAATTTTATAAAACTGAAC-------TGTTTTCTCTA--CATGAAAT------ATATTG--AAAACTG--TAGAATG-TGC-A-TTTCC-AGATT
gi|9 : tttatagaaaaaaaatgtctatctaTTGTT-A--GATGGAAT------ACATAA--AGAACTGT-TAAAATA-TGC-AGTTTCC-TGATT-TTCTTTATTTCATCATTTATCTA-CT-GATTAAAATGCATGTAT-CACTTTTCCCTCCTTTATTTCTGA-ATTATGAAAAA-GAACAATCTTAAAGAAAG---TATCCGAAACA
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): TTTTTGCACAAAGATATAATCCTCCACTTGTACCGTGTTTCAGTTAAGTCTACACTATCATAAGCATTAATCTAGTCGCAGTGAACTTTTAGTTACAGTCTCAAACGAATCATAAAACATATTTATCCACCGACATG
Alignments
lowQualScore : 22 111 2222 11111111111111 111 1111111 22222222222 111 4444444 555555555555555 1 11 11 22222 111 11 11 22222222222222 44444444444444444444444444444444 333333 111111 1 1 1 222
lowQualScore : 8 8 88 99 3 0 444 0000 1 99 99 77777777777777 000 1 6666666 2 6 88888888888 111 1 1 2222222 777777777777777 0 3 11 0 88 0 22222 3 444 11 44 6 5 3 5 33 5 00 5 44444444444444 33 5 55 3 5 0 0 5 1 33333333333333333333333333333333 5 0 00 0 3 2 555555 7 44 000000 0 55 88 3 3 44 5 1 5 5 9 5 3 1 3 3 2 6 1 6 333
lowQualScore : . . .. .. . . ... .... . .. .. .............. ... . ....... . . ........... ... . . ....... ............... . . .. . .. . ..... . ... .. .. . . . . .. . .. . .............. .. . .. . . . . . . ................................ . . .. . . . ...... . .. ...... . .. .. . . .. . . . . . . . . . . . . . . ...
lowQualScore : 0 0 00 44 8 6 888 2222 0 22 22 88888888888888 555 0 2222222 2 7 77777777777 777 0 0 5555555 000000000000000 0 8 00 8 66 6 88888 2 000 00 44 7 7 0 7 77 7 55 0 99999999999999 55 0 44 4 0 8 2 0 0 55555555555555555555555555555555 0 4 44 2 9 8 666666 4 66 555555 2 00 66 6 6 66 0 0 7 7 0 7 6 7 2 3 5 7 7 7 333
consensus : GAACTGGT-CGATTT-GAAACT-GTAA-ATTAAAAAA--AATCATA--TGNCA--TGCATCAT--TAGT---AAA--CATCG-ATTAGTATATCGAGANGACNTC----CCGGCATTCA-TGATTT---A-------TCATG---GAAAGNTCNAAA-------TTCTAAAAA------------CCATAG-AATATGACACCAAACGTGTATTT--TTTTCGTACTTTTC-A--ATGTATAC---CAT--GTTTCTNAT-GATGTA-ATTCTGT-ACGCAAT-ATACATGT-GACATT-TCTA------TTT---GTGTGATT-GCTGCGTGC-ATCG-ATGTGAAATTT-TTNATCA--------------TATTCA--------T---C-TTCAGTGTACTTTTATAANAATGAAC---ACTATGCTTTGTTTA--GATGGAAT------ACATAA--AGAACTG--TAAAATA-TGC-AGTTTCC-NGATTCTTNTTTATTTCATCATTTATCCA-CT-GATTAAAATGCATGTAT-CACTTTTCCCTCCTTTA-TTCTGA-ATTATGAAAAA-GAACAATCTTAAAGAAAG---TATCCGAAACA
Reference ( family-960 ) : GAACTGGT-CGATTT-GAAACT-GTAA-ATTAAAAAA--AATCATA--TGNCA--TGCATCAT--TAGT---AAA--CATCG-ATTAGTATATCGAGANGACNTC----CCGGCATTCA-TGATTT---A-------TCATG---GAAAGNTCNAAA-------TTCTAAAAA------------CCATAG-AATATGACACCAAACGTGTATTT--TTTTCGTACTTTTC-A--ATGTATAC---CAT--GTTTCTNAT-GATGTA-ATTCTGT-ACGCAAT-ATACATGT-GACATT-TCTA------TTT---GTGTGATT-GCTGCGTGC-ATCG-ATGTGAAATTT-TTNATCA--------------TATTCA--------T---C-TTCAGTGTACTTTTATAANAATGAAC---ACTATGCTTTGTTTA--GATGGAAT------ACATAA--AGAACTG--TAAAATA-TGC-AGTTTCC-NGATTCTTNTTTATTTCATCATTTATCCA-CT-GATTAAAATGCATGTAT-CACTTTTCCCTCCTTTA-TTCTGA-ATTATGAAAAA-GAACAATCTTAAAGAAAG---TATCCGAAACA
gi|1 : GAACCGTT-CGATTT-GAAACTCGTAT-ATTAAAAAA--AATCATT--TGGCA--TGCATCAT--TAGT---AAA--CATCG-ATTAGTATATTGAGAGAACGTC----TCAGCATGAA-TGGTTT---A-------TCATG---GAAAGTTCAAAAC------CTCTAAAAA------------TCATAG-AATATAACACCAAACGTGTA--T--TTTTCG-ACTGTT--A--ATGTATAC---CAT--GTTTCTAAT-GATGTA-TTTCTTT-ACACAAT-ATACAGGT-GACATT-TCTAG-----TTT---GTATGATT-GCTGCTTAC-ATCG-ATGTGAATTTC-TTTTTTA--------------TATTCA--------T---C-TTAAGTGTATTTTTATAATAATGAACATTACTATGCTTTGTTTA--GATGGATT------ACATAA--ATAACTG--TAGAATT-TGC-AGTTCCT-AGATTCTTGTTTGTTTTATTATCTATCCA-TTGGATT-TAATGCATGCAT-C-CTTTTTTCCACT-----------ATTGTGACATA-GAATAATCATAGAGAGAGAAAAATCTGAAACA
gi|10 : TTGTT-A--GATGGAAT------ACATAA--AGAACTG--TAAAATA-TGC-AGTTTCC-TGATT-TTCTTTATTTCATCATTTATCTA-CT-GATT-AAATGCATGTATGCACTTTTCCCTCCTTTATTTCTGA-ATTATGAAAAAGGAACAATCTTAAAGAAAG---TATCCGAAACA
gi|11 : tgTTTGTTTA--GATGGAAT------ACATAA--AGAACTG--TAAAATA-TGC-AGTTTCC-TGATT-TTCTTTATTTCATCATTTATCTA-CT-GATTAAAATGCATGTAT-CACTTTTCCCTCCTTTA-TTCTGA-ATTATGAAAAA-GAACAATCTTAAAGAAAG---TATCCGAAACAggtaaaatagtgttca
gi|12 : tGTTTTGTTTA--GATGGAAT------ACATAA--AGAACTG--TAAAATA-TGC-AGTTTCC-TGATT-TTCTTTATTTCATCATTTATCTA-CT-GATTAAAATGCATGTAT-CACTTTTCCCTCCTTTA-TTCT-A-ATTATGAAAAA-G-ACAATCTTAAAGAAAG---TATCCGAAACAggtaaaatagtgttca
gi|13 : AACGTATACTT--TTTTCTTACTTTTCCA--AT-TATAC----AT--GTTTCGTAG-GTTGCA-ATTTTGT-ACGCAGC-ACACATGT-GACATTCTCT--------------TGTGATT-TCTGCGTGC-ACCG-ATGT--AATAT-TTTATCA--------------TTTTC---------T---C-TACAGTGTACTTGTATAAAAATTA-----ACTATGACTTCTTTA--GATggtaaaatagtgttc
gi|14 : TTGTTTA--GATGGATT------ACATAA--ATAACTG--TAGCATT-TGC-AGTTTCCTAGATT-TTGTTTGTTTTATTATCT-TCCATTT-GATT-TAATGCATGCAT-CCTTTTTCCC-----TA-TTGTGACATT-------A-GAATAATCATAGAGAGAGAAAAATCTGAAACA
gi|15 : AACTGGT-AGGTTT-GAAACT--TAA-ATCAAACAATTAATTATAAATGTCA--TTCATTAT--TAGT---AAAGACAT---AATAGTATACC----TGGCCTCATTACCCGTATTCA-TGATTT---T-------TCATG---GGCAGGCCttccgaatgaatagtggttca
gi|2 : tatgtctccactgtcatgcaaaattAACTGGT-CGATTT-GAAACT--TAAGAT---AAAA--GATTAGA--TATCC--TGAATCAT--C-GTTCAAAA--C-TTA-AT-AGTATATCAAGATAAC-------CCAGCATTCA-TGATTT---ACAATGTATCATG---AAAAGGTCTAAA-------TTAAAAAAAAAAAAAAAAACACTATAG-AATGTGGCACCAAACGTGCATTTTGTTTTC-TAATTTTC-C--ATGTTTACATTCAT--ATTT---AC--ATGTA-ATTCTGC-ATGCAAT-GTACACGT-AATTTT-TTTGTTTGTTTTT---GTGCGATTCGCTGCGTGC-ACAA-AAGTGAAATTT-TCGATCA--------------T-TTC-------------C-TTCAG--------------AATGG-----ACTGTGCTTGGTTTG--GACTGAAT------AAAT-----GAAC----------A-TTC-AGTATTT-GGATTCTGATTTATTTTATTATTTATCCA-TT-GATT-AAACGCATATA---GCTTCTC
gi|3 : TCAT---TGAAA--TATATCACAATAGT---CAA---ATCGCATTTGTATA---AAAAGAACTT----CAGGTATTCA-TGATTTTTCA-------TCATGTACGCAAGTTCCACA-------TTCTAAAAG------------T-ATAG-AATATGACACCAGA-GTATATTT--TTTTCGCACTTCTC-CTTACATATGG---CATACGTTTCTTTTCGAAATA-ATTCTGT-GCACCA--ATATGTGT-GAC--T-TTTA------TT----GTGTGATT-GCTGCGTGC-TT---ATGTGAAATGT-TTGATCC--------------T--TCA--------T---C-T-------ACTTTTA-AAAACTGAAC-----TATG---TGTTTATAGATGGAAG------ACAATA--AGAACTA--TGAAATACTACCAGTTTCC-AGATTCTGATTTATTT
gi|4 : cttccacttttAACTGGTTCGATTTCAAAACT-GTAT-ATTAAAGCA----TCATT--TGGCAAATGTATCAT--TAG---------CATCG-ATTAGTATTTTGAGAGGACTTT----CCAGCATGAAATGGATT---A-------TCATG---GAAAGTTCAAAAACCCTCTTCCTAAAAT------------CCATAGCAATATAACACCAAACGTGTATTT--T---CG-ACTGTTT-A--ATGTATAC---CAT--GTTTCTAAT-GATGTATATTCTTT-A-GCACCAATACAGGT-GACATT-TCTA------TTT---G-ATGATT-GCTGCTTACAATCGAATGTGAATTTTCTTTTTTA--------------TATTTA--------T---C-TTAAGTGTATTTTTATAATAATGAACATTACTATGCt
gi|5 : GAACTGAT-CGATTT-GAAGCT--TAA-ATTACAAAA--AAGAA-A--TATCA--TGCATCAT--TAGT---AAA---ATCGTAATAATATATCTAAATGACGTC----CTGTTATTCC-TGATTC---A-------TTATG---GAAAGGTC
gi|6 : ttttcacaaagaaatacacctgcaattgtacagtgtatgaattaaatctaaacatttttaagtatccactaagtaatgatgagtttgtaattacagtctggaaagaatcataattatgtataactccactgtcatgaaacaTA-ATT--GTCGCACAATGAT-CATGTCAAAATT-CTTC------TTTTGAGTGTGATT-GCTGCGTGC-ATTG-AAGTGAAATGT-TTGACCA---------------ATTCATGAGAAAGT---A-TTCAATACACTTCTGCAAAAATGA-----ACTATGCTTTGTATA--GACTGAAA------AAAAAATTACAAATGCATAAAACA-TGC-AGCTTCC-ATATTCTGGTTTt
gi|7 : tatttaatgttaagtATT-TC-A------TTT---G----ATT-GCTGCGTAC-ATTG-ATGTGAAATTG-TCGATCACTTCATGAGAAATATATACA--------TGTACGTTCAGTATGCTTTTACAGTAAAGAAC-----TACA-TTTGTTTA--GACTGAATTATGTAAAAAAA--AAAATTA--CAGAGCA-TGC-AGTTCCC-AGATTCtacatggattaaatgcata
gi|8 : gtttctgatattttattccagcagcgggtgaatgacctagtttg-GATGCA-ATTATGT-ACATAAT-ATACATGT-GACA----GAA------AGT---GTCTGATT-GCTGAGTGT--TCG-ATGGGATTTTT-TTTATCA--------------T-TTCA--------T---C-TTCGGTGTAATTTTATAAAACTGAAC-------TGTTTTCTCTA--CATGAAAT------ATATTG--AAAACTG--TAGAATG-TGC-A-TTTCC-AGATT
gi|9 : tttatagaaaaaaaatgtctatctaTTGTT-A--GATGGAAT------ACATAA--AGAACTGT-TAAAATA-TGC-AGTTTCC-TGATT-TTCTTTATTTCATCATTTATCTA-CT-GATTAAAATGCATGTAT-CACTTTTCCCTCCTTTATTTCTGA-ATTATGAAAAA-GAACAATCTTAAAGAAAG---TATCCGAAACA
blockSeqs : T C G AG C TTA TAAA T AA AA TCAAAACTTA TCA T CTCATTA C A ACAATGTA TAC G T ACCCTCT AAAAAAAAAAACACT C C TG TT CCTT G ATT AC GT C T T C CA C C TGTTTGTTTTT TG C AA C A C T CTTCATGAGAAATATATACATGTA G T A ACATTA T TA TATGTA TT CA C C TA C C T . A G A T T T G C A G AAA
blockSeqs : . . . A T G GA T . . AAAGACAT TTG T CTT A . TTCA . G C . TCC . T . GC CCA A . . TT . . C . TG . . TCTTTTGA TG . A A . . G ATTCATGAGAAAGT . T A AC A . . . T . . T C C . . A . A T T T G . A . .
blockSeqs : . . . T T A TT A . . CAAATCGC TCT A TTT G . T . T A . GT . T . T CC G . . TA . . C . C . . TATTT TG . A C . . G TATTTAT . C T AC C . . . . . . T C C . . A . A T T . G . A . .
blockSeqs : . . . A . . T G . . AAAATCGT CC G GTC A . A . T T . G TA . . . . . . C . T . . AAAGT TG . T T . . T TTTTCT . C A AC C . . . . . . T C G . . . . C T T . G . A . .
blockSeqs : A T . . CATCG . T . G . A . G . . A . T . . TATT TC . A T . . G TTTCAT . T T A C . . . . . . G . A . . . . G . . . . . . . .
blockSeqs : . . . . . . ATTT A . A C . . G TTCAT . . A A T . . . . . . A . A . . . . A
blockSeqs : . T . . . . . . T TTTC . . . A . . . . . . . A . G
blockSeqs : . . . . . . . A . C
blockSeqs : . . . . . . A .
blockSeqs : . . . . . . T
blockSeqs : .
blockSeqCons : ** N* CC*** TATTT********* TTTCAT************************** AC**** ***
originalCons : GAACTGGT-CGATTT-GAAACT-GTAA-ATTAAAAAA--AATCATA--TGNCA--TGCATCAT--TAGT---AAA--CATCG-ATTAGTATATCGAGANGACNTC----CCGGCATTCA-TGATTT---A-------TCATG---GAAAGNTCNAAA-------TTCTAAAAA------------CCATAG-AATATGACACCAAACGTGTATTT--TTTTCGTACTTTTC-A--ATGTATAC---CAT--GTTTCTNAT-GATGTA-ATTCTGT-ACGCAAT-ATACATGT-GACATT-TCTA------TTT---GTGTGATT-GCTGCGTGC-ATCG-ATGTGAAATTT-TTNATCA--------------TATTCA--------T---C-TTCAGTGTACTTTTATAANAATGAAC---ACTATGCTTTGTTTA--GATGGAAT------ACATAA--AGAACTG--TAAAATA-TGC-AGTTTCC-NGATTCTTNTTTATTTCATCATTTATCCA-CT-GATTAAAATGCATGTAT-CACTTTTCCCTCCTTTA-TTCTGA-ATTATGAAAAA-GAACAATCTTAAAGAAAG---TATCCGAAACA
finalCons : GAACTGGT-CGATTT-GAAACT--TAA-ATTAAAAAA--AATCATA--TGNCA--TGCATCAT--TAGT---AAA--CATCG-ATTAGTATATCGAGANGACNTC----CCGGCATTCA-TGATTT---A-------TCATG---GAAAGNTCNAAA-------TTCTAAAAA------------CCATAG-AATATGACACCAAACGTGTATTT--TTTTCN-ACTTTTCC---ATGTATAC---CAT--GTTTCTNAT-GATGTA-ATTCTGT-ACGCAAT-ATACATGT-GACATT-TCTATTT---------GTGTGATT-GCTGCGTGC-ATCG-ATGTGAAATTT-TTNATCATTTCAT--------------------------C-TTCAGTGTACTTTTATAANAATGAAC----CTATGCTTTGTTTA--GATGGAAT------ACATAA--AGAACTG--TAAAATA-TGC-AGTTTCC-NGATTCTTNTTTATTTCATCATTTATCCA-CT-GATTAAAATGCATGTAT-CACTTTTCCCTCCTTTA-TTCTGA-ATTATGAAAAA-GAACAATCTTAAAGAAAG---TATCCGAAACA
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): TTTTTGCACAAAGATATAATCCTCCACTTGTACCGTGTTTCAGTTAAGTCTACACTATCATAAGCATTAATCTAGTCGCAGTGAACTTTTAGTTACAGTCTCAAACGAATCATAAAACATATTTATCCACCGACATG
Alignments
lowQualScore : 11 111 2222 11111111111111 111 1111111 22222222222 111 4444444 555555555555555 1 11 11 1111 111 11 11 22222222222222 1 444444444444444444444444444444 44444 111111 1 1 1 222
lowQualScore : 8 8 99 99 3 0 444 0000 1 99 99 77777777777777 000 1 6666666 2 6 88888888888 111 1 1 2222222 777777777777777 0 3 11 0 77 0 4444 444 11 44 6 5 3 5 33 5 00 5 44444444444444 33 5 55 3 5 0 0 5 1 0 777777777777777777777777777777 00 0 3 2 22222 7 44 000000 0 55 88 3 3 44 5 1 5 5 9 5 3 1 3 3 2 6 1 6 333
lowQualScore : . . .. .. . . ... .... . .. .. .............. ... . ....... . . ........... ... . . ....... ............... . . .. . .. . .... ... .. .. . . . . .. . .. . .............. .. . .. . . . . . . . .............................. .. . . . ..... . .. ...... . .. .. . . .. . . . . . . . . . . . . . . ...
lowQualScore : 0 0 00 44 8 6 888 2222 0 22 22 88888888888888 555 0 2222222 2 7 77777777777 777 0 0 5555555 000000000000000 0 8 00 8 00 6 2222 000 00 44 7 7 0 7 77 7 55 0 99999999999999 55 0 44 4 0 8 2 0 0 0 222222222222222222222222222222 44 2 9 8 55555 4 66 555555 2 00 66 6 6 66 0 0 7 7 0 7 6 7 2 3 5 7 7 7 333
consensus : GAACTGGT-CGATTT-GAAACT--TAA-ATTAAAAAA--AATCAT--ATGNCA--TGCATCAT--TAGT---AA--ACATCG-ATTAGTATATCGAGANGACNTC----CCGGCATTCA-TGATTT---A-------TCATG---GAAAGNTCNAAA-------TTCTAAAAA------------CCATAG-AATATGACACCAAACGTGTATTT--TTTTCG-ACTTTTCC--ACGTATAC---CAT--GTTTCTNAT-GATGTA-ATTCTGT-ACGCAAT-ATACATGT-GACATT-TCTA------TTT---GTGTGATT-GCTGCGTGC-ATCG-ATGTGAAATTT-TTNATCAT-TTCA--------T------------C-------TTCAGTGTACTTTTATAANAATGAAC----CTATGCTTTGTT--TAGATGGAAT------ACATAA--AGAACTG--TAAAATA-TG-CAGTTTCC-NGATTCTTNTTTATTTCATCATTTATCCA-CT-GATTAAAATGCATGTAT-CACTTTTCCCTCCTTTA-TTCTGA-ATTATGAAAAA-GAACAATCTTAAAGAAAG---TATCCGAAACA
Reference ( family-960 ) : GAACTGGT-CGATTT-GAAACT--TAA-ATTAAAAAA--AATCAT--ATGNCA--TGCATCAT--TAGT---AA--ACATCG-ATTAGTATATCGAGANGACNTC----CCGGCATTCA-TGATTT---A-------TCATG---GAAAGNTCNAAA-------TTCTAAAAA------------CCATAG-AATATGACACCAAACGTGTATTT--TTTTCN-ACTTTTCC--ATGTATAC---CAT--GTTTCTNAT-GATGTA-ATTCTGT-ACGCAAT-ATACATGT-GACATT-TCTA------TTT---GTGTGATT-GCTGCGTGC-ATCG-ATGTGAAATTT-TTNATCAT-TTCA--------T------------C-------TTCAGTGTACTTTTATAANAATGAAC----CTATGCTTTGTT--TAGATGGAAT------ACATAA--AGAACTG--TAAAATA-TG-CAGTTTCC-NGATTCTTNTTTATTTCATCATTTATCCA-CT-GATTAAAATGCATGTAT-CACTTTTCCCTCCTTTA-TTCTGA-ATTATGAAAAA-GAACAATCTTAAAGAAAG---TATCCGAAACA
gi|1 : GAACCGTT-CGATTT-GAAACTCGTAT-ATTAAAAAA--AATCAT--TTGGCA--TGCATCAT--TAGT---AA--ACATCG-ATTAGTATATTGAGAGAACGTC----TCAGCATGAA-TGGTTT---A-------TCATG---GAAAGTTCAAAAC------CTCTAAAAA------------TCATAG-AATATAACACCAAACGTGTA--T--TTTTCG-ACTGTT-A--ATGTATAC---CAT--GTTTCTAAT-GATGTA-TTTCTTT-ACACAAT-ATACAGGT-GACATT-TCTAG-----TTT---GTATGATT-GCTGCTTAC-ATCG-ATGTGAATTTC-TTTTTTATATTCA--------T------------C-------TTAAGTGTATTTTTATAATAATGAACATTACTATGCTTTGTT--TAGATGGATT------ACATAA--ATAACTG--TAGAATT-TG-CAGTTCCT-AGATTCTTGTTTGTTTTATTATCTATCCA-TTGGATT-TAATGCATGCAT-C-CTTTTTTCCACT-----------ATTGTGACATA-GAATAATCATAGAGAGAGAAAAATCTGAAACA
gi|10 : TTGTT---AGATGGAAT------ACATAA--AGAACTG--TAAAATA-TG-CAGTTTCC-TGATT-TTCTTTATTTCATCATTTATCTA-CT-GATT-AAATGCATGTATGCACTTTTCCCTCCTTTATTTCTGA-ATTATGAAAAAGGAACAATCTTAAAGAAAG---TATCCGAAACA
gi|11 : tgTTTGTT--TAGATGGAAT------ACATAA--AGAACTG--TAAAATA-TG-CAGTTTCC-TGATT-TTCTTTATTTCATCATTTATCTA-CT-GATTAAAATGCATGTAT-CACTTTTCCCTCCTTTA-TTCTGA-ATTATGAAAAA-GAACAATCTTAAAGAAAG---TATCCGAAACAggtaaaatagtgttca
gi|12 : tGTTTTGTT--TAGATGGAAT------ACATAA--AGAACTG--TAAAATA-TG-CAGTTTCC-TGATT-TTCTTTATTTCATCATTTATCTA-CT-GATTAAAATGCATGTAT-CACTTTTCCCTCCTTTA-TTCT-A-ATTATGAAAAA-G-ACAATCTTAAAGAAAG---TATCCGAAACAggtaaaatagtgttca
gi|13 : AACGTATACTT--TTTTCTTACTTTTCC--AATTATAC----AT--GTTTCGTAG-GTTGCA-ATTTTGT-ACGCAGC-ACACATGT-GACATTCTCT--------------TGTGATT-TCTGCGTGC-ACCG-ATGT--AATAT-TTTATCAT-TTTC--------T------------C-------TACAGTGTACTTGTATAAAAATTAA-----CTATGACTTCTT--TAGATggtaaaatagtgttc
gi|14 : TTGTT--TAGATGGATT------ACATAA--ATAACTG--TAGCATT-TG-CAGTTTCCTAGATT-TTGTTTGTTTTATTATCT-TCCATTT-GATT-TAATGCATGCAT-CCTTTTTCCC-----TA-TTGTGACATT-------A-GAATAATCATAGAGAGAGAAAAATCTGAAACA
gi|15 : AACTGGT-AGGTTT-GAAACT--TAA-ATCAAACAATTAATTATAAATGTCA--TTCATTAT--TAGT---AAAGACAT---AATAGTATACC----TGGCCTCATTACCCGTATTCA-TGATTT---T-------TCATG---GGCAGGCCttccgaatgaatagtggttca
gi|2 : tatgtctccactgtcatgcaaaattAACTGGT-CGATTT-GAAACT--TAAGAT---AAAA--GATTAG--ATATCC--TGAATCAT--C-GTTCAAA--AC-TTA-AT-AGTATATCAAGATAAC-------CCAGCATTCA-TGATTT---ACAATGTATCATG---AAAAGGTCTAAA-------TTAAAAAAAAAAAAAAAAACACTATAG-AATGTGGCACCAAACGTGCATTTTGTTTTCT-AATTTTCC--ATGTTTACATTCAT--ATTT---AC--ATGTA-ATTCTGC-ATGCAAT-GTACACGT-AATTTT-TTTGTTTGTTTTT---GTGCGATTCGCTGCGTGC-ACAA-AAGTGAAATTT-TCGATCAT-TTC----------------------C-------TTCAG--------------AATGGA-----CTGTGCTTGGTT--TGGACTGAAT------AAAT-----GAAC----------A-TT-CAGTATTT-GGATTCTGATTTATTTTATTATTTATCCA-TT-GATT-AAACGCATATA---GCTTCTC
gi|3 : TCAT---TGAAA--TATATCACAATAGT---CA--A-ATCGCATTTGTATA---AAAAGAACTT----CAGGTATTCA-TGATTTTTCA-------TCATGTACGCAAGTTCCACA-------TTCTAAAAG------------T-ATAG-AATATGACACCAGA-GTATATTT--TTTTCGCACTTCTCCTTACATATGG---CATACGTTTCTTTTCGAAATA-ATTCTGT-GCACCA--ATATGTGT-GAC--T-TTTA------TT----GTGTGATT-GCTGCGTGC-TT---ATGTGAAATGT-TTGATC-C-TTCA--------T------------C--------------TACTTTTA-AAAACTGAA-----CTATG---TGTTTATAGATGGAAG------ACAATA--AGAACTA--TGAAATACTACCAGTTTCC-AGATTCTGATTTATTT
gi|4 : cttccacttttAACTGGTTCGATTTCAAAACTG-TAT-ATTAAAGCA----TCAT--TTGGCAAATGTATCAT--TAG---------CATCG-ATTAGTATTTTGAGAGGACTTT----CCAGCATGAAATGGATT---A-------TCATG---GAAAGTTCAAAAACCCTCTTCCTAAAAT------------CCATAGCAATATAACACCAAACGTGTATTT--T---CG-ACTGTTTA--ATGTATAC---CAT--GTTTCTAAT-GATGTATATTCTTT-A-GCACCAATACAGGT-GACATT-TCTA------TTT---G-ATGATT-GCTGCTTACAATCGAATGTGAATTTTCTTTTTTATATTTA--------T------------C-------TTAAGTGTATTTTTATAATAATGAACATTACTATGCt
gi|5 : GAACTGAT-CGATTT-GAAGCT--TAA-ATTACAAAA--AAGAA---ATATCA--TGCATCAT--TAGT---AA--A-ATCGTAATAATATATCTAAATGACGTC----CTGTTATTCC-TGATTC---A-------TTATG---GAAAGGTC
gi|6 : ttttcacaaagaaatacacctgcaattgtacagtgtatgaattaaatctaaacatttttaagtatccactaagtaatgatgagtttgtaattacagtctggaaagaatcataattatgtataactccactgtcatgaaacaTA-ATT--GTCGCACAATGAT-CATGTCAAAATT-CTTC------TTTTGAGTGTGATT-GCTGCGTGC-ATTG-AAGTGAAATGT-TTGACCAA-TTCATGAGAAAGT------------A-------TTCAATACACTTCTGCAAAAATGAA-----CTATGCTTTGTA--TAGACTGAAA------AAAAAATTACAAATGCATAAAACA-TG-CAGCTTCC-ATATTCTGGTTTt
gi|7 : tatttaatgttaagtATT-TC-A------TTT---G----ATT-GCTGCGTAC-ATTG-ATGTGAAATTG-TCGATCAC-TTCA--------TGAGAAATATATACATGTACGTTCAGTATGCTTTTACAGTAAAGAA-----CTACA-TTTGTT--TAGACTGAATTATGTAAAAAAA--AAAATTA--CAGAGCA-TG-CAGTTCCC-AGATTCtacatggattaaatgcata
gi|8 : gtttctgatattttattccagcagcgggtgaatgacctagtttg-GATGCA-ATTATGT-ACATAAT-ATACATGT-GACA----GAA------AGT---GTCTGATT-GCTGAGTGT--TCG-ATGGGATTTTT-TTTATCAT-TTCA--------T------------C-------TTCGGTGTAATTTTATAAAACTGAAC-------TGTTTTCTC--TACATGAAAT------ATATTG--AAAACTG--TAGAATG-TG-CA-TTTCC-AGATT
gi|9 : tttatagaaaaaaaatgtctatctaTTGTT---AGATGGAAT------ACATAA--AGAACTGT-TAAAATA-TG-CAGTTTCC-TGATT-TTCTTTATTTCATCATTTATCTA-CT-GATTAAAATGCATGTAT-CACTTTTCCCTCCTTTATTTCTGA-ATTATGAAAAA-GAACAATCTTAAAGAAAG---TATCCGAAACA
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): TTTTTGCACAAAGATATAATCCTCCACTTGTACCGTGTTTCAGTTAAGTCTACACTATCATAAGCATTAATCTAGTCGCAGTGAACTTTTAGTTACAGTCTCAAACGAATCATAAAACATATTTATCCACCGACATG