lowQualScore : 22222222222222222222222222222222222222222222222222222222222222222222222 22222222222222222222222222222222222222222222222222222222222222222222222222 111111111111111111111 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 55555555555555555555555555555555555555555555555555555555555555555555555 22 333333333333 1 222222 1 2222 1 11 66666666666666666 2222222222 111 4444444444444444444444444444444444 3333333 5555555 2 11111111 777777777777777777777777 22222 22 1 33333 1 1 22222222222222222222222222222222222222222222222222222222222222222222222222 333 22 1 333333333333333333333 1 666666666 111 1 1 11 222222 8888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 111 22222222222 11 1 7777777777777777777777777777777777777777777 22222 4444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 1111111111 5555555555555555555555 222222222 111 3333333333
lowQualScore : 00000000000000000000000000000000000000000000000000000000000000000000000 0 9 22 444444444444 3 0 4 8 777777 11 6 3 3 3 77 5555 8 5 1 33 5 33333333333333333 3333333333 333 6 2222222222222222222222222222222222 9 9999999 2222222 3 3 2 3 0 88888888 0 000000000000000000000000 99999 6 11 6 7 55555 6 5 6 5 55555555555555555555555555555555555555555555555555555555555555555555555555 333 2 6 11 6 5 6 6 888888888888888888888 5 3 3 6 999999999 888 2 5 77 888 6 8 5 0 0 5 0 22 888888 2 6 4 5 5 0 8888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 888 0 88888888888 11 3 4 3333333333333333333333333333333333333333333 00000 6 5 7777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 1 7777 55 0 3 0 1 1111111111 7777 4444444444444444444444 77 88888 3 888888888 0 111 1 2 1 7777777777
lowQualScore : ....................................................................... . . .. ............ . . . . ...... .. . . . . .. .... . . . .. . ................. .......... ... . .................................. . ....... ....... . . . . . ........ . ........................ ..... . .. . . ..... . . . . .......................................................................... ... . . .. . . . . ..................... . . . . ......... ... . . .. ... . . . . . . . .. ...... . . . . . . .................................................................................................................................. ... . ........... .. . . ........................................... ..... . . ..................................................................................................................................... . .... .. . . . . .......... .... ...................... .. ..... . ......... . ... . . . ..........
lowQualScore : 77777777777777777777777777777777777777777777777777777777777777777777777 7 0 33 777777777777 3 7 0 3 777777 77 0 7 7 3 66 8888 0 0 4 88 0 88888888888888888 5555555555 777 7 4444444444444444444444444444444444 7 0000000 0000000 3 5 2 3 8 55555555 2 555555555555555555555555 00000 0 00 0 0 00000 0 0 0 5 00000000000000000000000000000000000000000000000000000000000000000000000000 555 5 0 00 0 0 0 0 000000000000000000000 0 0 0 7 111111111 555 0 0 88 000 7 7 1 6 9 0 7 88 888888 2 0 0 0 0 7 2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 333 8 88888888888 00 3 0 2222222222222222222222222222222222222222222 88888 6 0 6666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 2 7777 00 4 3 2 0 0000000000 2222 1111111111111111111111 99 33333 3 444444444 5 444 0 0 9 0000000000
consensus : TACATAATC-AATC-ACATTACTA--T--AT---AGCTCATCCCGAA----CGTATACT--TATACCTCCCA----AAG-GTACGCAAAAATGAATTCAGAAAA-TGCCT-TTGCTTT-TATTCGAATTTTA-CC---TGGGTCCTGGNANT-GTACTACT--ATAC-AGAATGTTTGTGCATTGCAA-NAA--TA---GT-TACATA------G---AATGTGCAACA-TTAGATAGAT-ATTT-G-AGGTTGAATTTC-TTACCCCAATTCATAAACTGAAGTCCGTA------ATAGCTCCAAGTGACTA-AAAATTGTAAAACCGTCCGCACTTTCA----C---TCAC-GT--------CCGNCGCCTCTAATTACCCCTAAACGATATGAGAACCCATAATAAGTTTAATACTCAAATATCAATTTTGATTGATACTGATAATTCANTGTAGTGCATAAATTATGCTAATAACAGATCTTTANANAGGGATACACAGAACTCTTGTTCTGTNTATTTTCATCCAAACCACATTAGCACTTGTAGGTGTTTGATAATTTATGATAGTGANGTCNATTTGGTTAATTAGTGGCACCAGTCAAAATGGCTGCGANAAGT-GAAAGTGCGGACGGTTTTACAATTTTTAGTCACTTGGAGCTA------TTACGGACTTCAGTTTA-T-GAATTGGGGTA-------------A-GA-----AA--TTC------A----------T-----CT-A---------TAATGTTGNACATT---C----TA----TA--TGTAA--TTGCTTGTTGCAA-TG-----CACTAACATTCTGTGTATAGT----AGTATA-AGTNCCA-GGCNCGAGT-----GGCATT----------------TCTNTGAATTCA----TTTCT--GCATATCTTGGGAAGTATACGGAATTT-CGGGATGA----ACTT----GTAG-G-TA--GT----A-TG--TAG-T-----A-------T---GTAT----GAA------TATATTAGAAT-ACAGAGTAGAATTTT-A-A----TATCATTTGGTT--TAT-GT-TTGTTTTTTCA----TCG--GCGAACTT-GGGTACCCTA-T------ATTT--A-GAG-T-------------NTTT---TAC--CTT-----TAC-T---CTTN-AATAGTA---AATTCGAACCCAAGCGATAT----A----TGCCTGTG
Reference ( gi|1 ) : TACATAATCTAAT----ATTACT---TTCAT---AATTTACCCAGAAATTTCGTATACTAGTATACTTCCCACGATAAGTGTATGCAGAGATCAATTCAGAAAAATACCTATTAGTTT-TACTTGAAATTTA-CT---TGGACCCTAGCACT-GTACTACT--A-AC-AGAATCTTTGTGAATTGTAA-AAA--TA---GT-TGTATA------G---AATCTGCAACA-TTAGATATAT-ATTT-A-AAATTAAACTTC-TTACCCTATTTTATAAATTGAAGTCCATA------GTAGCTCCAAGTGACTGTATAGTTGCAAAACTGTCTGCGCTATCA----C---TCAC-GC--------CCGCCGTCTTT--TTACCCCAACAGGACAGAAGGACCCAAAACGATATTGAGATTCAAATATTAATTATAGTGAATATTAACAACTTAATATTGTACACAGACGATG----------ATCTT--AATAA--ATGCGCAGAACTCTTATTATGTCTGTTTCAACCCAAACCACCTCAACAC----AGAAACTTGACA--TT-TGATAATGAAGTCAATTTGGGTAATTATTGGCAATGGTCAAGACGGTTGTGACACGT-GAAAATACAGATGGTTGTACAATTTCCAGTCACTTGGAGCTA------TTACGGACTTCAATCTA-T-GAATTGGGGTA-------------A-GA-----AA--T--------A----------T-----CT-A---------TAACGTTGCATGTT---C----TA----TG--TGTAA--TTGCTTGTTACAACTGATATTCAGTAACATTCTGTGTATAGT----AGTATACAGTGCCA-GGCTCGAGT-----GACATT----------------TTTCTGAGTTGA----TTTCT--ATATATCTTGGGAAGTATACGAAATTT-CGGGATGA----A-------GTAA-GCTA--GT----A-TG--TAG-------A-------T---GTAT----GAA------TATATTAGAATAACAAAGTAGGATTTT-ATACATGTATCATGTGGTT--T-TGGT-GTATTTTTTTA----TCG--GCGAACTT-GGGTACCCTA-T------ATTT--A-GAG-T-------------GTTT---TAC--CTT-----TAC-T---GTTA-AATAATA---AATTCAAACCCAAGCGATAT----A----CGCCTGTG
gi|2 : TGCATAATC-AATCTACATTACTA--TT--T---AACTTAATCACA------GCATTCT-GTATACCTCC------AAAGGTATGCAAAAATG---TCATAGA-----CTATTATTTT-TATTTGAATTTTA-CC---TGTGCCCTGGTACT-CTACTCCTTTG-AT-AAAATGTTTGTCATTTGCAACAAG--CAAAGGT-ATTATA------G---AATGT-TAATGCTTAAAT-TATCATTTCA-AGATGAA---------------TTTATAAATTAAAGTCCGTA------ATAGCTCCAAGTGACTA-AAAATTGTAAAGCTGTCCACACTTTCA----CACATCAT-GT--------CC
gi|3 : aaaattaattttgattgatactgattcaatgtagtacataaattatgctaataacagatctttaaaaagatacacagctcttatgtctattttcatccaaaccacattagcacttgtaggtgtttgataatttatgatagtaagtccatttggttaatcagtcaaaatTACATAATC-AAT--------CT------AT---A---CATCCCGAA----CGTATA----TATACTTTTCAAGATA------CGCAAAAATGAATTCAGAAAACTGCCTTTTGCTCTCTATTGGAAATTTATCTGCATGGGTCCTGGGATTTGTATCACT--A-GCTAGAATGTTTGTGCATTGTAA-CAAC-TC---AT-TA-ATA------G---AATGTGCAACA-TTAAATA-AT-AT--------------TTC-TTACCCAAATTTATAAATAGAAGTCCGTA------ACAGTTCCAAATAAATGCA-AATTGTAAATCCGTCTGCGTTTTCAACTTT---TCACAGCCATTTTGACTGGTGCCTCTAATTACCCCTAAACGATATGAGAACCCATAATAAGTTTAATACTCAAATATCAATTTT--T--ATA-----AATTCATTATAGTGCAT-----ATG-----------TCTT--TATAAGGATACAC--AACTTTTGTTCTGTATATTtgaaaatattaaaaaacagagtagaattctaaaacagttagtcttttaaatttttcgtcggcgaacttgggcaccctatatttagagatgtattcctttactctttaatggtaaattccaacctagatgtaattgcctgtg
gi|7 : caggcaattacgtatatcgcttgggtttgaatttatcatttagagtaaaactatagaactagaactcaaaaaaataggatgcccaagtttgctgacgaaaaaacaatcaaccaaatgatataaaatcccgctctgtattctattaaactcgACATAATC-AATCGACATTACCACCTACATGTAAGTTCATCCCGAAATTCCGTATACT--------TCCCA-----AG-GTATGCAGATATGAATTCAGAAAAATGCCT-----TTT-TGCTCGAATTTCA-CC---TGGATCTTGGCAGT-GTAC---------C-AAAATGTTTAT------------A--CA----T-TACATA------G---CATGTGCATCA-TTAGATAattatctaatcca
gi|9 : aaaaaacattaaacgaagagatataaaattctactctgtattctgatatattcacACTACT--ATAC-AGAATGTTAGTGCATTACAAGAAA--TT---GCATACATA------GTCAAATGTTCAACA-TTAGAAGGA--ATTT-G-AGGTTGAATTTC-TCACTCCAATTCATAAACTGAAGTCTGTAATACATGTAGCTCCAAGTGGC--TAAAATTTTAAAACCGTCAACACTTCCA----C---TAAC-
gi|13 : gggtccgggccttatgtttacACT--ATAC-AGAATGTTAGTGCATTACAA-GAA-------AT-TGCATACATGTCA---AATGTTCAACA-TTAGATAGAA-TTTT-G-AAGTTGAATTTC-TCACTCCAATTCATAAACTGAAGTCTGTAATACATGTAGCTCCAAGTGGCTA-AAAATTTTAAAACCGTCAACACTTCCA----C---Tc
gi|10 : GTGTATTGCAA-CAAGCTA----T-TACATA------G---AATTCGTAACA-TTAAGTA-GC-ATTT-ATAAGTTGAACCTC-TTACCCCAATTCATGAACTGAAATCCTCA------ATAGCTCCA-------------TTGCAAAACCGTCTGCACTTTCA----C---T
gi|11 : ATTAAGTGTCATTATC--ATTCTATAAATTGAAGTCCTTA------ATAGCTCCAAATGAC-AAACAATTGTAAGACCGTCTGGACT-TCA----C---TTAT-TT--------CAGCCGtcttgaaccattttgactggtgtcatctggttgatcttttttatt
gi|2 : gataatgacgttaatttggttggttagttgtacAAA-ATTAATTTTGATTGATACTGAT---TCAATGTAGTACATAAATTATGCTAATAACAGATCTTTAAAAAG--ATACACAG--CTCTTAT---GTCTATTTTCATCCAAACCACATTAGCACTTGTAGGTGTTTGATAATTTATGATAGT-AAGTCCATTTGGTTAATCA---------GTCAAAATGGACATGATGTGT-GAAAGTGTGGACAGCTTTACAATTTTTAGTCACTTGGAGCTA------TTACGGACTTTAATTTA-T-AAATTCATCT--------------T-GA-----AA--TGATA----A----------T-----TT-A----------AGCATTA-ACATT---C----TA----TA---ATACCTTTGCTTGTTGCAAATGACA------AACATTTTAT-CAAAGG----AG--TAGAGTACCAGGGCACAGGT-----AAAATTCAAATAAAAATAATAGTCTATGA---CA----TTTTT--GCATACCTTTGGAGGTATACAGAATGC-TGTGATTA----A-------GTTA-AATA--GTA---A-TG--TAGATTGATTA-------T---GCAT----GAA------AATATTAAAA-AACAGAGTAGAATTCTAAAACA-GT------TAGTC--T-T--T-TAAATTTTTCG----TCG--GCGAACTT-GGGCACCCTA-T------ATTT--A-GAGAT-------------GTAT---T-C--CTT-----TAC-T---CTTT-AATGGTA---AATTCCAACCTA---GATGT----AAT--TGCCTGTGgccgcctttctattcaatagtttgcagcagtgcacaaaaat
gi|11 : GATAATGACGTTAATTTGGTTGGTTAGTTGTA-----C----CGGCTGAAATAAGT-GAAG-TCCAGACGGTCTTACAATTGTTTGTCATTTGGAGCTA------TTAAGGACTTCAATTTA-TAGAAT---GATA-------------ATGA-----CA----------------------------CT-----------TAATGCCGCCT-TT---C----TA----T
gi|3 : GGGTAATTAGAGGCACCAGTCAAAATGGCTGTGAAAAGTTGAAAACGCAGACGGATTTACAATTTGCATTTATTTGGAACTG------TTACGGACTTCTATTTA-T-AAATTTGGGTA-------------A-GA-----AA--T--------A----------T------T-ATT-------TAATGTTGCACATT---C----TA----T-----TAA--TGAGTTGTTACAA-TG-----CACAAACATTCTA-GC-TAGT----GATACA-AATCCCA-GGtcaatagtttgcagcagtgcacaaaaat
gi|10 : caggcaattacgtatatcgcttgggtttgaatttatcatttagagtaaaactatagaactagaactcaaaaaaataggatgcccaagtttgctgacgaaaaaacaatcaaccaaatgatataaaatcccgctctgtattctattaaactcgtacataatcaatctatacatcccgaacgtatatatacttttcaagatacgcaaaaatgaattcagaaaactgccttttgctctctattggaaatttatctgcatgggtTGACACCAGTCAAAATGGTT-CAAGAAGT-GAAAGTGCAGACGGTTTTGCAAT------------GGAGCTA------TTGAGGATTTCAGTTCA-T-GAATTGGGGTA-------------A-GAGGTTCAACTT--------A----------TAAATGCT-ACT-------TAATGTTACGAATT---C----TA--------TGTAA--TAGCTTGTTGCAActaaacgatatgagaacccataataagtttaatactcaaatatcaatttttataaattcattatagtgcatatgtctttataaggatacacaacttttgttctgtatattattatctaatcca
gi|9 : gtgtaGT-GGAAGTGTTGACGGTTTTAAAATTTT-AGCCACTTGGAGCTACATGTATTACAGACTTCAGTTTA-T-GAATTGGAGTG-------------A-GA-----AA--TTCA-----A----------C-----CTCAAATTCCTTCTAATGTTGAACATTTGAC----TA----TGTATGCAA--TTTCTTGT---AA-TG-----CACTAACATTC--TGTATAGT----AGTGTAtctggttgatcttttttatt
gi|13 : gggtccgggccttatgttGT-GGAAGTGTTGACGGTTTTAAAATTTTTAGCCACTTGGAGCTACATGTATTACAGACTTCAGTTTA-T-GAATTGGAGTG-------------A-GA-----AA--TTC------AACTTCAAAATT-----CT-ATC-------TAATGTTGAACATT---TGACATG----TA--TGCAA--TTTCTTGT---AA-TG-----CACTAACATTC--TGTATAGT----taacc
gi|14 : aAGTACAAA--GTTTTAAAATTTCCAATCACTT----------------C--ACTTCA-CCTAAT-GAATTGGGGTATGCAATTCAACTTA-GA-----AA--TTCAAAATTA----------T-----AT-C---------TAATGTTGAACATT---A----TACACGTA--TGTAA--TTGCTTGTTGCAA-TG-----CACTAACACCCTGT
gi|20 : ctTTTCAAGTCGCCCTGATCTA------TGAAAGACTTCATTTTA-T-GAAtttgt
gi|7 : AACATTTTG-GTACACTGCCAAG-ATCCAG-GTGA-AATTCGAGCAAAAAGGCATT----------------TTTCTGAATTCA----TATCT--GCATACCTTGGGAAGTATACGGAATTT-CGGGATGA----ACTTACATGTAG-G-TG--GTA---A-TG--TCGATTGATTA-------T---GTGT----GAA------TATATCAGAAT-ACAGAGTAGAATTTT-ATAaatgaaaattcacttgtcatttcgaccggttcctttatttaccaaataagaaggaat
gi|6 : aaaaaacattaaacgaagagaCGAGT-----AGCATC----------------TCCATATATTAAGCATTTTCTTCAT-TATCTTGGGAAGTATACGGAATTT-CAGGACGACTTTG-------GTAG-G--A--------A-TG--TGG-------ATTGATTGT---GTAT----AAA------TATATTGGGAT-ACAGAGTGGAATTTT-A-A-----ATCATTTGGTT--T---AT--TGTTTTTTCA----TTG--GCATACTTCGAG--CCCTA-----------------------------------------TAC--CTT-----TAC-TCTAGCTATAATAGTA---AGTTCTGACCCAAGCGATAC----AAT--TACCTGTGtatacattacatagcatgtgcatcattagata
gi|3 : -----GGCAGT----------------TTTCTGAATTCA----TTTTT--GCGTATCTTGAAAAGTATATATACGTT-CGGGATGT----A--------TAG-ATTG--AT------T-------------A-------T---GTAC----GAG------TTTAATAGAAT-ACAGAGCGGGATTTT-A------TATCATTTGG----T-TGAT--TGTTTTTTCG----TCA--GCAAACTT-GGGCATCCTATT------TTTT--T-GAG-TTCTA---------GTTC---TATAGTTT-----TAC-T----CTA-AATGATA---AATTCAAACCCAAGCGATAT----A----C
gi|5 : caggcaattaTTCT--GCATATTTTGGGAGGTATATGGAATAT-CGGGACGA----ACTTTG--GTAG-G--A--AT----A-TAAATAG-------A-------TTGTGTAT----GAA------TATATTAGAAT-ACAGAGTAGAACTTT-A-A-----ATCATTTGACT--TATTGT-TTATTGTT------------------TT-GGGCACGCTA-T------ATTT--A-AAG-T-------------TTTT---TAC--CTT-----GAC-T---CT----ATGACAGT-AATTTAAttttgctctctattggaaatttatctgcatgggtcctgggatttgtatcactagctagaatgtttgtgcattgtaacaactcattaatagaatgtgcaacattaaataatatttcttacccaaatttataaatagaagtccgtaacagttccaaataaatgcaaattgtaaatccgtctgcgttttcaacttttcacagccattttgactggtgcctctaattacccctaaacgatatgagaacccataataagtttaatactcaaatatcaatttttataaattcattatagtgcatatgtctttataaggatacacaacttttgttctgtatattattatctaatcca
gi|8 : ttgcaaaaacgacaggtctacattttgttgagtggtattagggctgagcccagctaaaggtcgacctaaaaataatcgaggcaTATCTTACGAAGTATACGCAAGTT-CGGGATGA------------------CTATCG-----A-T---TGGTT-----A-------T---GCGT----GAA------TATGTTAGAATG-CAGAGTAGAATATT-TTAC------CATTTGGTACAT-TGTTTGT-TTTTTTTA----TTG--GCAAACTT-GTGTATTCTT-T------ATTC--A-GAG---------------ACCTAGATAC--CTT-----AAC-T---ACTT-AATTGTA---AATCCGAGCCCAAGTAATAC----A----cgtaa
gi|18 : TGAGAAGTATACGGAATTT-CGGGATGA----ACTTTG--GTCATGTTG--GTGGTGA-TG--TAG-------AT------T---GCTT----GAATTAATGTATATCAGAAT-ACAGAATAGAACTTT-A-A-----ATCATTTGGTT--TATTGT-TTGTTTGTTTgct
gi|12 : tcAAATTTATGGCATGA----A-------ATCT-GGTA--GT----AGTG--T-G-------A-------T---GTATATCCGGG------TGTATT-GTATATCA-----GAATTTT-AAA-----ATCATTTGGTT--T--------ATTA----A----CCA--GCGAACGT-CTGTACCCTG-T------ATTT-------------------------T---TACT-CCT-----TA------ATTA---TAGCA---ATTTCGAAACCAAGCGATAT----AGAATTGCTTGTG
gi|15 : ataTGT----GTA------TATATCAGAATA-CTGAGTACAATTTT--T---TGT-TC----GGTT--AATAGT-GGGTTTT-TTA----TCG--GCGAAT-----ATACCCT--T-------TCT--ATGAG-T-------------CTGT---TAC--CTTCAATATGCAT---GTAA-AATAAT------TTCGAATCCAAGAGACAT----------GCCTGTG
gi|23 : tgtTTTTCTCA----TCG--GTCAACTT-GGCTACCCTA-T------ATTT--A-GAG-T-------------TCTA---TAC--CTT-----TAC-T---CTTC-AAg
gi|21 : atagacagttataaatatcgcaagaagttTTTTTCA----TCG--GCAAACTT-GAGTGCCCTG-T------CTTT--A-GAG-T-------------TCTA---CAC--CTT-----TAC-T---CTT--TACAGTA---AATTCGAACCCATGCGATA
gi|24 : TTTTG----TCG--GCGAACTT-CAGAACCCTA-T------ATCT--A-AAG-TTCAATACATCTACATTG---TAC--TTG-----TAC-T---TTTT-AATAGTG---AACTCAAAaaattgccagt
gi|4 : TTTTAAATTTCGCTGTGAACTT-GGGTAACC---T------ATTA--A-GAG-T--------------TTTATATAC--CTT-----TAC-T---CTTT-TATTATAGTTAATCAAAATCTACGAAATATAATAA----TGTCTGTG
gi|22 : ACTT-AGGTACTCTA-TTTTAGTATTTTTA-GAA-T-------------TCTA---TAC--ATT-----TAT-T----CTATAATAGTT---AATTCAAGCCCAAGTGATAT----A----ttctgaatgaatcaattaaagtcaattatgtaatttttacacacagtctgcagtctccagttcagatgaccagagttctcaaattctactctgtttatttttattttcaaaagttttcttttgcaaaaagtttcagattaaaaaacacctccctctcagtctctaattcattgcctataaaacatgaaaaatccctctccccatcatcagtttttga
4 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|16 ): CGCTTTCACTTTAACAGACATTTTGAGAGTCACCTCTAATTACGCCAAAATTTGAAGTTTACCCGTAACTATTGAGGTCAAATATTCATTTAGATCAATTCACTATAGTACATGTACAAACATTATGCTAATAACTTTT
Unaligned ( gi|17 ): AAAAATTGATATACAAAATTGATATAGAATATAAATTGTGCTATTAATGGGCCCTTGTAAAGATATACACAAATTTTATTATCTATTTGCACCCCTATTATATTAACATAGGTGTTTGATGATTTAT
Unaligned ( gi|19 ): GCAGATTTTGTGTGAACGGAATTTTGTGTTGAACTTTTGCAGTAATGTAAATTGTTGGTGAATATATATTTGAACACAGAGCAGAATTTATTCATTGTTTATTGATTGGGG
Unaligned ( gi|25 ): ATACTCATTATTGCGAGGTCAAGGTCTATAGCTCCCATGTCACTTCATTTTTCATGGGTATTTCTTCATATC
Alignments
lowQualScore : 1 888888888888888888 444444444444444 6666666666666 1 2 333 111 1 11 1 2222 333333333 1 4444444444444444444444 222 555555 1111 1 2222 1 555555555 1 1 2222 222222 111 33333333333 222222222 33333333333 33333 1111 22 3333 2222 11 11 1111 8888888888888888888888888888888888888888888888 22222222 11111 11111 1111 1 22222222 8888888888888888888888888888888888888888888888888888 11 11 2222222222 77777777777777777777777777777777777777777 111111 33333333 2222222 33333333333333333333 111111111111 44444444444
lowQualScore : 3 777777777777777777 777777777777777 0 7777777777777 5 7 6 666 777 3 77 3 3 3 1111 7 0 555 777777777 0 4 1 4444444444444444444444 2 111 3 0 44 0 0 777777 5555 2 0 1111 0 333333333 1 7 6 5 4444 777777 1 555 3 2 6 99999999999 8 2 2 666666666 22222222222 1 44444 6666 2 44 1 11 0 5555 44 3 1111 8 1 11 77 22 0 11 1 0 6 1 99 6 5 5 4 0 0000 0 0 6 5 2 7777777777777777777777777777777777777777777777 11 88888888 77 5 5 5 44444 8 66666 7 8888 1 0 55555555 4444444444444444444444444444444444444444444444444444 11 6 33 1111111111 4 0 44444444444444444444444444444444444444444 666 000000 55 3 3 00000000 1111111 4444 1 2 1 1 1 555 3 7777 3 44444444444444444444 888888888888 1 2 0 11111111111
lowQualScore : . .................. ............... . ............. . . . ... ... . .. . . . .... . . ... ......... . . . ...................... . ... . . .. . . ...... .... . . .... . ......... . . . . .... ...... . ... . . . ........... . . . ......... ........... . ..... .... . .. . .. . .... .. . .... . . .. .. .. . .. . . . . .. . . . . . .... . . . . . .............................................. .. ........ .. . . . ..... . ..... . .... . . ........ .................................................... .. . .. .......... . . ......................................... ... ...... .. . . ........ ....... .... . . . . . ... . .... . .................... ............ . . . ...........
lowQualScore : 3 000000000000000000 333333333333333 7 0000000000000 0 3 7 777 777 3 33 7 3 7 2222 0 8 000 888888888 8 0 0 8888888888888888888888 5 555 2 2 55 2 2 555555 2222 5 5 2222 5 333333333 0 3 0 0 3333 000000 0 000 2 0 5 88888888888 8 8 8 444444444 00000000000 0 55555 0000 0 22 0 00 7 7777 00 2 2222 8 0 88 99 77 1 33 7 7 0 7 33 6 7 0 8 1 9999 7 7 3 7 5 0000000000000000000000000000000000000000000000 11 77777777 99 3 7 7 33333 3 11111 0 8888 0 0 00000000 0000000000000000000000000000000000000000000000000000 00 7 66 9999999999 0 8 11111111111111111111111111111111111111111 000 555555 00 6 6 22222222 3333333 9999 6 3 1 0 8 888 3 1111 3 00000000000000000000 888888888888 4 0 1 00000000000
consensus : TACATAATC-AATC---ATT-CT-TCATAGTTCGTCCCGAA----CGTATACCA-TATACTTCCCA----A-G-GTACGCAAAAAT-AATTCAGAAAA-TGCCT---TT-ANTTT-TA-NTCGAAATTTANCTG----GGTCCCGGCNCT-GT------ACCACTANACAGAATGTTNGTGCATTGCAAGAA-TCGT-TGCATA------G---AATGTNCAACATTAGATAGA-ATTTGAAGTTGAATTTCTCACCCCAATTCATAAACTGAAGTCCGTAATACATGTAGCTCCAAGTGGCTGNA-AATTNTAAAACCGTCNGCGCTTCCA----CTCACGNCC---------GNCGCCTCTAATTACCCC-AAA-GATATGAGG---ACCCGTAA-TAA--TTGAGACTCAAATATTAATTTTGATCGATATT-A-AATTCANTATAGTACAT-----AA-ATTATGCTAATAACGGATCTTTATAAAGG-ATACACAGAACTCTTATT-TGTCTATTTTCACCCAAACCACATTAACAC---TAGGTGTTTGATAATTTATGATAG----TGANGTCGATTT--GGT-TAATTAG-NGGCACCGGTCAAAATGGCTGCGANAAGT-GAAAGCGCAGACGGTTTTACAATTTTC--AGTCACTTGGAGCTATTACGGACTTCAATTTAT-GAATTGGGGTA-------------A-GAAAT--TCA----T--------CTA--T--AACGTTGCACATTCTA----TATGTAA--TNGCTTGTTGC-AA-TG-----CACAAACATTCTGTGCATAGTAGTACA-AGTNCCA-GG-CN-----CGAGC-----GG---CATT----------------TCT-AT--------GAATT---CA--TTT-CTGCAT--ATCTT----------GGGAAGTATACGGAATTT-CGGGATGAA--CT-------T--GTAGG-TAGT-A-TG--TAGAT----TATGT--GTGAA------TATA--TTAGAAT-ACAGAGTAGAAT-TTTA-----ATATCATTTGGTTT-A-T-GTTT-GT-TTTTTCGTCGGCGAACTTGGGTACCCTATATTT---A-G----AG-T-------------NCT--N-TACCTTTACTC-T---T-TA---ATAGTAAATTCGAACCCAAGCGATAT----A------TGCCTGTG
Reference ( family-947 ) : TACATAATC-AATC-ACATTACTAT-ATAGCTCATCCCGAA----CGTATACT--TATACCTCCCA----AAG-GTACGCAAAAATGAATTCAGAAAA-TGCCT---TT-GCTTT-TA-TTCGAATTTTACCTG----GGTCCTGGNANT-GT------ACTACTATACAGAATGTTTGTGCATTGCAANAA-TAGT-TACATA------G---AATGTGCAACATTAGATAGATATTTGAGGTTGAATTTCTTACCCCAATTCATAAACTGAAGTCCGTAA------TAGCTCCAAGTGACTAAA-AATTGTAAAACCGTCCGCACTTTCA----CTCACGTCC---------GNCGCCTCTAATTACCCCTAAACGATATGAGA---ACCCATAA-TAAGTTTAATACTCAAATATCAATTTTGATTGATACTGATAATTCANTGTAGTGCAT-----AA-ATTATGCTAATAACAGATCTTTANANAGGGATACACAGAACTCTTGTTCTGTNTATTTTCATCCAAACCACATTAGCACTTGTAGGTGTTTGATAATTTATGATAG----TGANGTCNATTT--GGT-TAATTAG-TGGCACCAGTCAAAATGGCTGCGANAAGT-GAAAGTGCGGACGGTTTTACAATTTTT--AGTCACTTGGAGCTATTACGGACTTCAGTTTAT-GAATTGGGGTA-------------A-GAAAT--TCA----T--------CTA--T--AATGTTGNACATTCTA----TATGTAA--TTGCTTGTTGC-AA-TG-----CACTAACATTCTGTGTATAGTAGTATA-AGTNCCA-GG-CN-----CGAGT-----GG---CATT----------------TCT-NT--------GAATT---CA--TTT-CTGCAT--ATCTT----------GGGAAGTATACGGAATTT-CGGGATGAA--CT-------T--GTAGG-TAGT-A-TG--TAG------TATGT--ATGAA------TATA--TTAGAAT-ACAGAGTAGAAT-TTTA-----ATATCATTTGGTTT-A-T-GTTT-GT-TTTTTCATCGGCGAACTTGGGTACCCTATATTT---A-G----AG-T-------------NTT--T-TACCTTTACTC-T---T-NA---ATAGTAAATTCGAACCCAAGCGATAT----A------TGCCTGTG
gi|1 : TACATAATCTAAT----ATTACTTTCATAATTTACCCAGAAATTTCGTATACTAGTATACTTCCCACGATAAGTGTATGCAGAGATCAATTCAGAAAAATACCTA--TT-AGTTT-TA-CTTGAAATTTACTTG----GACCCTAGCACT-GT------ACTACTA-ACAGAATCTTTGTGAATTGTAAAAA-TAGT-TGTATA------G---AATCTGCAACATTAGATATATATTTAAAATTAAACTTCTTACCCTATTTTATAAATTGAAGTCCATAG------TAGCTCCAAGTGACTGTATAGTTGCAAAACTGTCTGCGCTATCA----CTCACGCCC---------GCCGTCTTT--TTACCCCAACAGGACAGAAGG---ACCCAAAA-CGATATTGAGATTCAAATATTAATTATAGTGAATATTAACAACTTAATATTGTACAC-----AG-ACGATG----------ATCTTAATAAA----TGCGCAGAACTCTTATTATGTCTGTTTCAACCCAAACCACCTCAACAC----AGAAACTTGACA--TT-TGATAA----TGAAGTCAATTT--GGG-TAATTAT-TGGCAATGGTCAAGACGGTTGTGACACGT-GAAAATACAGATGGTTGTACAATTTCC--AGTCACTTGGAGCTATTACGGACTTCAATCTAT-GAATTGGGGTA-------------A-GAAAT----A----T--------CTA--T--AACGTTGCATGTTCTA----TGTGTAA--TTGCTTGTTAC-AACTGATATTCAGTAACATTCTGTGTATAGTAGTATACAGTGCCA-GG-CT-----CGAGT-----GA---CATT----------------TTT-CT--------GAGTT---GA--TTT-CTATAT--ATCTT----------GGGAAGTATACGAAATTT-CGGGATGAA--------------GTAAGCTAGT-A-TG--TAG-------ATGT--ATGAA------TATA--TTAGAATAACAAAGTAGGAT-TTTATACATGTATCATGTGGTTT-T-G-GTGT-AT-TTTTTTATCGGCGAACTTGGGTACCCTATATTT---A-G----AG-T-------------GTT--T-TACCTTTACTG-T---T-AA---ATAATAAATTCAAACCCAAGCGATAT----A------CGCCTGTG
gi|10 : --GAT-CAACCAGATGACACCAGTCAAAATGGTT-CAAGAAGT-GAAAGTGCAGACGGTTTTGCAAT--------------GGAGCTATTGAGGATTTCAGTTCAT-GAATTGGGGTA-------------A-GAGGT--TCAAC--TTATAAATGCTACTT--AATGTTACGAATTC------TATGTAA--TAGCTTGTTGC-AA-TA-----CAC
gi|11 : GATAA----TGACGTTAATTT--GGT-TGGTTAG-TTGTACC---------GGCTGAAATAAGT-GAA-GTCCAGACGGTCTTACAATTGTT--TGTCATTTGGAGCTATTAAGGACTTCAATTTATAGAAT---GATA-------------ATGA------CA-------------CT---T--AATGCCGC-CTTTCTA----T-T-CAA--TAGTTTGCAGC-AG-TG-----CACAAAAATttttttatt
gi|12 : AATTTATGGCATGAAATCT-------G--GTAG--TAGT-G-TG--ATG------TATAT--CCGGG------TGTA--TT-GTAT-AT----CAGAAT-TTTA-----AAATCATTTGGTTT-A-T-------------TAACCAGCGAACGTCTGTACCCTGTATT---------------------------------------TTTACTC-C---T-TAATTATAGCAATTTCGAAACCAAGCGATAT----AGAAT--TGCTTGTG
gi|13 : ataaACTATACAGAATGTTAGTGCATTACAAGAA---AT-TGCATACATGTCA---AATGTTCAACATTAGATAGAATTTTGAAGTTGAATTTCTCACTCCAATTCATAAACTGAAGTCTGTAATACATGTAGCTCCAAGTGGCTAAA-AATTTTAAAACCGTCAACACTTCCA----CT
gi|14 : GTTTTAAAATTTCC--AATCACTT----------C--ACTTCACCTAAT-GAATTGGGGTATGCAATTCAACTTA-GAAAT--TCAAAATT--------ATA--TCTAATGTTGAACATTATACACGTATGTAA--TTGCTTGTTGC-AA-TG-----CACTAACACCCTGT
gi|15 : ctagtacaaaT--GTGTA------TATA--TCAGAAT-ACTGAGTACAAT-TTT---------TTGTTCGGTTA-A-T-AGTG-GG-TTTTTTATCGGCGAAT----ATACCCT-T-TCT---ATG----AG-T-------------CTG--T-TACCTTCAATA-T---G-CATGTAAAATAATTTCGAATCCAAGAG--AC----A------TGCCTGTGtttgt
gi|16 : tgtTTT--GGCGTAATTAG-AGGTGACTCTCAAAATGTCTGTTA-AAGT-GAAAGCGg
gi|16 : ---------GTCACCTCTAATTACGCC-AAA--ATTTGAAGTTTACCCGTAACTA---TTGAGG-TCAAATATTCATTTAGATC---------AATTCACTATAGTACATGTACAAACATTATGCTAATAACatttgaagtttacccgtaactattgaggtcaaatattcatttagatcaattcactatagtacatgtacaaacattatgctaataactttt
gi|17 : cgctttcactttaacagacattttgagaATTGATATACAAAATTGA-TATAGAATAT-----AA-ATTGTGCTATTAATGGGCCCTTGTAAAGATATACACAAA--TTTTAT--TATCTATTTGCACCCCTATTATATTAACA----TAGGTGTTTGATGATTTATtttt
gi|18 : aaaaT----------GAGAAGTATACGGAATTT-CGGGATGAA--CTTTGGTCAT--GTTGG-TGGTGA-TG--TAG------ATTGC--TTGAATTAATGTATA--TCAGAAT-ACAGAATAGAAC-TTTA-----A-ATCATTTGGTTT-ATT-GTTT-GT-TTGTT
gi|19 : tcACGGAATTT-TGTGTTGAA--CT-------T--TT--G-CAGT-AATG--TAA------ATTGTTGGTGAA------TATATATTTGAAC-ACAGAGCAGAAT-TT-------AT-TCATT--GTTT-A-T-t
gi|2 : gcagattttgtgtgaAAA-ATTAATTTTGATTGATACTGAT---TCAATGTAGTACAT-----AA-ATTATGCTAATAACAGATCTTTAAAAAG--ATACACAG--CTCTTAT---GTCTATTTTCATCCAAACCACATTAGCACTTGTAGGTGTTTGATAATTTATGATAG----T-AAGTCCATTT--GGT-TAAT----------CAGTCAAAATGGACATGATGTGT-GAAAGTGTGGACAGCTTTACAATTTTT--AGTCACTTGGAGCTATTACGGACTTTAATTTAT-AAATTCATCT--------------T-GAAATGATAA----T--------TTA-----AGCATT-AACATTCTA----TA-ATACCTTTGCTTGTTGCAAA-TG------ACAAACATTTTAT-CAAAGGAGTA-G-AGTACCAGGG-CA-----CAGGT-----AA---AATTCAAATAAAAATAATAGTCT-AT--------GA------CA--TTT-TTGCAT--ACCTT----------TGGAGGTATACAGAATGC-TGTGATTAA--GT-----------TAAA-TAGTAA-TG--TAGATTGATTATGC--ATGAA------AATA--TTAAAAA-ACAGAGTAGAAT-TCTA-----A-AACAGTTAGTCT------TTTAAA-TTTTTCGTCGGCGAACTTGGGCACCCTATATTT---A-G----AGAT-------------GTA--T-T-CCTTTACTC-T---T-TA---ATGGTAAATTCCAACCTA---GATGT----AAT----TGCCTGTGtgattgggg
gi|20 : ATTT--GG--TAAATAA-AGGAACCGGTCGAAAT------GACAAGT-GAA-----------TTTT-C-ATTTTTCAAGTCGCCCTGATCTATGAAAGACTTCATTTTAT-GAA
gi|21 : -TTTTTCATCGGCAAACTTGAGTGCCCTGTCTTT---A-G----AG-T-------------TCT--A-CACCTTTACTC-T---T-T----ACAGTAAATTCGAACCCATGCGATAA----AAT----TGCCAGTaagaaggaat
gi|23 : T-TTTCTCATCGGTCAACTTGGCTACCCTATATTT---A-G----AG-T-------------TCT--A-TACCTTTACTC-T---T-CA---A
gi|24 : atagacagttataaatatcgcaagaagttTTTTGTCGGCGAACTTCAGAACCCTATATCT---A-A----AG-TTCAATACATCTACATT--G-TACTTGTACTT-T---T-TA---ATAGTGAACTCAAA
gi|3 : AACTTATTATGGGTTCTCATATCG-TTTAGGGG-TAATTAG-AGGCACCAGTCAAAATGGCTGTGAAAAGTTGAAAACGCAGACGGATTTACAATTTGC--ATTTATTTGGAACTGTTACGGACTTCTATTTAT-AAATTTGGGTA-------------A-GAAATA-TTA----T--------T----T--AATGTTGCACATTCTA----T---TAA--TGAGTTGTTAC-AA-TG-----CACAAACATTCTA-GC-TAGTGATACA-AATCCCA-GGACC-----CATGC-----AGATAAATT----------------TCCAATAGAGAGCAAAAGG---CAGTTTT-CTGAATTCATTTTTGCGTATCTTGAAAAGTATATATACGTT-CGGGATG-------------T--ATAGA-T------TG---AT------TATGT--ACGAG------TTTA--ATAGAAT-ACAGAGCGGGAT-TTT------ATATCATTTGGTTG-A-----TT-GT-TTTTTCGTCAGCAAACTTGGGCATCCTATTTTTTTGA-GTTCTAG-T-------------TCT--A-TAGTTTTACTC-----T-AA---ATGATAAATTCAAACCCAAGCGATAT----ACGTAATTGCCTG
gi|3 : TACATAATC-AATC----------T-ATA---CATCCCGAA----CGTATA----TATACTTTTCA----A-G-ATACGCAAAAATGAATTCAGAAAACTGCCT---TTTGCTCTCTA-TTGGAAATTTATCTGCATGGGTCCTGGGATTTGT------ATCACTAGCTAGAATGTTTGTGCATTGTAACAACTCAT-TA-ATA------G---AATGTGCAACATTAAATA---AT----------ATTTCTTACCCAAATTTATAAATAGAAGTCCGTAA------CAGTTCCAAATAAATGCA-AATTGTAAATCCGTCTGCGTTTTCAACTTTTCACAGCCATTTTGACTGGTGCCTCTAATTACCCCTAAACGATATGAGA---ACCCATAA-TAAGTTTAATACTCAAATATCAATTTT--T--ATA-----AATTCATTATAGTGCA-----------TATG-----------TCTTTATAA--GGATACAC--AACTTTTGTTCTGTATATTATTATCTAATCCAtaatactcaaatatcaatttttataaattcattatagtgcatatgtctttataaggatacacaacttttgttctgtatattattatctaatcca
gi|4 : caggcaattacgtatatcgcttgggtttgaatttatcatttagagtaaaactatagaactagaactcaaaaaaataggatgcccaagtttgctgacgaaaaaacaatcaaccaaatgatataaaatcccgctctgtattctattaaactcgTTTCG-CTGTGAACTTGGGTAACC--TATTA---A-G----AG-T-------------TTTA-TATACCTTTACTCTT---T-TATT-ATAGTTAATCAAAATCTACGAAATATAATAA------TGTCTGTG
gi|5 : ttttaaaTACACAATC-TATTTATATTCCTACCAAAGTTCGTCCCGA-------TATTCCA-TATACCTCCC----------------AAAAT--ATGCAG--AA-TGCCTCGATT-ATTTT-TAGGTCGACCTTTAGCTG----GG-CTCAGCCCTAAT------ACCACTCAACAAAATGTttctgaatgaatcaattaaagtcaattatgtaatttttacacacagtctgcagtctccagttcagatgaccagagttctcaaattctactctgtttatttttattttcaaaagttttcttttgcaaaaagtttcagattaaaaaacacctccctctcagtctctaattcattgcctataaaacatgaaaaatccctctccccatcatcagtttttga
gi|5 : ttgcaaaaacgacaggtctTT-CTGCAT--ATTTT----------GGGAGGTATATGGAATAT-CGGGACGAA--CT-------TTGGTAGG--AAT-A-TAAATAGAT----TGTGT--ATGAA------TATA--TTAGAAT-ACAGAGTAGAAC-TTTA-----A-ATCATTTGACTT-A-TTGTTT-AT-TGTTT------------TGGGCACGCTATATTT---A-A----AG-T-------------TTT--T-TACCTTGACTC-T---A-TG---ACAGTAATTTtgaatatattagaatacagagtagaactttaaatcatttgacttattgtttattgttttgggcacgctatatttaaagttttttaccttgactctatgacagtaatttaacgtaa
gi|6 : ttgcaaaaacgacaggtctacattttgttgagtggtattagggctgagcccagctaaaggtcgacctaaaaataatcgaggca-----CGAGT-----AG---CATC----------------TCC-AT--------ATATTAAGCA--TTTTCTTCATT-ATCTT----------GGGAAGTATACGGAATTT-CAGGACG-A--CT-------TTGGTAGG--A---A-TG--TGGATTGATTGTGT--ATAAA------TATA--TTGGGAT-ACAGAGTGGAAT-TTTA-----A-ATCATTTGGTTT-A-----TT-GT-TTTTTCATTGGC---------------ATACTT---C-G----AG-C-------------CCT--A-TACCTTTACTC-TAGCTATA---ATAGTAAGTTCTGACCCAAGCGATAC----AAT----TACCTGTGaacgtaa
gi|7 : --T--AATGATGCACATGCTA----T-----------------GT-AA-TG-----TATAAACATTTTG-GTACACT-GC-CA-AGATCCA-GG-TGAAATTCGAGCAAAAAGG---CATT----------------TTT-CT--------GAATT---CA--TAT-CTGCAT--ACCTT----------GGGAAGTATACGGAATTT-CGGGATGAA--CTTACA---T--GTAGG-TGGTAA-TG--TCGATTGATTATGT--GTGAA------TATA--TCAGAAT-ACAGAGTAGAAT-TTT------ATATCTCTTCGTTTAA-T-GTTT-TT-T
gi|8 : T--ATCTT----------ACGAAGTATACGCAAGTT-CGGGATGA----C-------T--ATCGA-TTG-----G--T--------TATGC--GTGAA------TATG--TTAGAAT-GCAGAGTAGAATATTT-------TACCATTTGGTAC-A-TTGTTT-GTTTTTTTTATTGGCAAACTTGTGTATTCTTTATTC---A-G----AG-A-------------CCTAGA-TACCTTAACTA-C---T-TA---ATTGTAAATCCGAGCCCAAGTAATAC----A------gata
gi|9 : G----GGTCCGGGCCTT-ATGTTTACACTACTATACAGAATGTTAGTGCATTACAAGAAATTGCATACATA------GTCAAATGTTCAACATTAGAAGGA-ATTTGAGGTTGAATTTCTCACTCCAATTCATAAACTGAAGTCTGTAATACATGTAGCTCCAAGTGGCT-AA-AATTTTAAAACCGTCAACACTTCCA----CTAACgct
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|22 ): TTACATGCAATTATATCACTTGGGCTTGAATTAACTATTATAGAATAAATGTATAGAATTCTAAAAATACTAAAATAGAGTACCTAAGT
Unaligned ( gi|25 ): ATACTCATTATTGCGAGGTCAAGGTCTATAGCTCCCATGTCACTTCATTTTTCATGGGTATTTCTTCATATC
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111111111111111111
lowQualScore : 1 88888888888888 1 33333 2222 333333333 444444444444444 333 1 1 11 2222 3333333333 55555555555555555555555 111 33333333333 333333 2222 555555555 1 33333 222 22222 1 333333333333 222222222 33333333333 1 222 33333 2222 22222222 7777777777777777777777 444 11 111111 22222 1111 1 22222222222222222222222222222222222222222222222222222222222222 111 7777777777777777777777777777777777777777 111111 33333333 2222222 2222222222222222222 111111111111 444444
lowQualScore : 3 44444444444444 2 0 55555 2222 333333333 0 1 777777777777777 666 3 1 3 44 3 1 1111 7 4 1 7777777777 7 1 3 99999999999999999999999 1 333 0 44444444444 1 1 0 777777 44 8 1 1 1111 333333333 1 1 7 3 44444 333 0 55 77777 2 3 3 222222222222 8 666666666 11111111111 66 9 999 666 11 77777 44 3 1111 8 1 55 77 5 99999 1 0 0 88888888 5 5555 1 7777 2 6 55 0 8 3 4444444444444444444444 3 222 11 1 6 6 777777 00000 7 4444 1 0 11111111111111111111111111111111111111111111111111111111111111 5 3 444 6 5 4 2222222222222222222222222222222222222222 0 4 1 000000 55 3 3 00000000 1111111 4444 1 2 0 0 888888 999 3 6666 3333333333333333333 555 000000000000 1 0 0 8888 222222
lowQualScore : . .............. . . ..... .... ......... . . ............... ... . . . .. . . .... . . . .......... . . . ....................... . ... . ........... . . . ...... .. . . . .... ......... . . . . ..... ... . .. ..... . . . ............ . ......... ........... .. . ... ... .. ..... .. . .... . . .. .. . ..... . . . ........ . .... . .... . . .. . . . ...................... . ... .. . . . ...... ..... . .... . . .............................................................. . . ... . . . ........................................ . . . ...... .. . . ........ ....... .... . . . . ...... ... . .... ................... ... ............ . . . .... ......
lowQualScore : 3 00000000000000 0 7 77777 7777 777777777 7 0 333333333333333 777 3 0 3 33 7 0 2222 0 2 0 8888888888 5 0 2 44444444444444444444444 0 888 8 88888888888 4 4 8 222222 22 0 0 0 2222 333333333 0 0 3 3 33333 333 7 77 77777 0 2 2 888888888888 8 444444444 77777777777 55 0 000 555 00 33333 00 2 2222 8 0 00 99 7 77777 7 7 4 44444444 7 3333 7 0000 5 7 88 8 0 8 2222222222222222222222 8 000 00 0 7 7 777777 55555 0 5555 0 0 44444444444444444444444444444444444444444444444444444444444444 4 8 000 7 7 0 1111111111111111111111111111111111111111 8 0 8 555555 00 6 6 22222222 3333333 9999 4 3 2 9 888888 666 1 5555 0000000000000000000 444 222222222222 8 9 7 5555 000000
consensus : TACATAATC-AATC---ATT--CCT--CATAGTTCGTCCCGAA----CGTATACCA-TATACTTCCCA-----AG-ATACGCAGAAAT-AATTCAGAAAA-TGCCT---TT-ANTTT-TAN-TCGAAATTTANCTG----GGTCCCGGCNCT-G-T------ACCACTANACAGAATGTTAGTGCATTGCAANAA-TCG-T-TACATAC-T---GT--AATGTTCAACATTAGATANA-ATTTTGAA-------GTTGAATTTCTTACCCCAATTCATAAACTGAAGTCCGTAATACATGTAGCTCCAAGTGACTGNA-AATTTTAAAACCGTCNGCGCTTCCA----CTCAC---------GNCCGNCGCCTCTAATTACCCC-AA--A-GATATGAGG---ACCCGTAACNA--T--TGAGACTCAAATATTAATTTTGAT--ATACTAA--ATTCANTATAGTACAT----AA--ATTATGCTAATAACGGATCTTTATAAAGGATACACAGAACTCTTATT-TGTCTATTTTCACCCAAACCACATTAACACT---AGGTGTTTGATAATTTATGATAG----TGANGTCGATTT--GGT-TAATTAGA-GGCACCGGTCGAAATGGCTGTGANAAGT-GAAAGCGCAGACGGTTTTACAATTTTCA-GTCACTTGGAGCTATTACGGACTTCAATTTAT-GAATTNGGGTAA-GAAAT--TCA---------T-CTA--TAACGTTGCACGTTCTAT-TGTAA--TNGCTTGTTGC-AA-TG-----CACAAACATTCTGTGCATAGTAGTACA-AGTNCCA-GG-CN-----C----------------------GAGTAAAA-GGCATT----------------TTTCTGAATT---CATTT-CTGCAT-ATCTTGGGAAGTATACGGAATTT-CGGGATGAA--CT-------T--GTAGG-TAGT-A-TG--T--A----GAT-TATGTGTGAA------TATA--TTAGAAT-ACAGAGTAGAAT-TTTA-----ATATCATTTGGTTT-A-T-GTTT-GT-TTTTTCGTCGGCGAACTTGGGTACCCTAT------ATTT---A-G----AGTTC-------------T--ATACCTT---TACTC-T---T-TA---ATAGTAAATTCGAACCCAAGCGATAT----AAT----TGCCTGTG
Reference ( family-947 ) : TACATAATC-AATC---ATT--CTT--CATAGTTCGTCCCGAA----CGTATACCA-TATACTTCCCA-----AG-GTACGCAAAAAT-AATTCAGAAAA-TGCCT---TT-ANTTT-TAN-TCGAAATTTANCTG----GGTCCCGGCNCT-G-T------ACCACTANACAGAATGTTNGTGCATTGCAAGAA-TCG-T-TGCATA------G---AATGTNCAACATTAGATAGA-ATTT-GAA-------GTTGAATTTCTCACCCCAATTCATAAACTGAAGTCCGTAATACATGTAGCTCCAAGTGGCTGNA-AATTNTAAAACCGTCNGCGCTTCCA----CTCAC---------GNCCGNCGCCTCTAATTACCCC-AA--A-GATATGAGG---ACCCGTAATAA--T--TGAGACTCAAATATTAATTTTGATCGATATTAA--ATTCANTATAGTACAT----AA--ATTATGCTAATAACGGATCTTTATAAAGGATACACAGAACTCTTATT-TGTCTATTTTCACCCAAACCACATTAACACT---AGGTGTTTGATAATTTATGATAG----TGANGTCGATTT--GGT-TAATTAGN-GGCACCGGTCAAAATGGCTGCGANAAGT-GAAAGCGCAGACGGTTTTACAATTTTCA-GTCACTTGGAGCTATTACGGACTTCAATTTAT-GAATTGGGGTAA-GAAAT--TCA---------T-CTA--TAACGTTGCACATTCTATATGTAA--TNGCTTGTTGC-AA-TG-----CACAAACATTCTGTGCATAGTAGTACA-AGTNCCA-GG-CN-----C----------------------GAGC-----GGCATT----------------TCTATGAATT---CATTT-CTGCAT-ATCTTGGGAAGTATACGGAATTT-CGGGATGAA--CT-------T--GTAGG-TAGT-A-TG--T--A----GAT-TATGTGTGAA------TATA--TTAGAAT-ACAGAGTAGAAT-TTTA-----ATATCATTTGGTTT-A-T-GTTT-GT-TTTTTCGTCGGCGAACTTGGGTACCCTAT------ATTT---A-G----AGTNC-------------T--NTACCTT---TACTC-T---T-TA---ATAGTAAATTCGAACCCAAGCGATAT----A------TGCCTGTG
gi|1 : TACATAATCTAAT----ATTACTTT--CATAATTTACCCAGAAATTTCGTATACTAGTATACTTCCCACGATAAGTGTATGCAGAGATCAATTCAGAAAAATACCTA--TT-AGTTT-TAC-TTGAAATTTACTTG----GACCCTAGCACT-G-T------ACTACTA-ACAGAATCTTTGTGAATTGTAAAAA-TAG-T-TGTATA------G---AATCTGCAACATTAGATATATATTT-AAA-------ATTAAACTTCTTACCCTATTTTATAAATTGAAGTCCATA------GTAGCTCCAAGTGACTGTATAGTTGCAAAACTGTCTGCGCTATCA----CTCAC---------GCCCGCCGTCTTT--TTACCCC-AACAG-GACAGAAGG---ACCCAAAACGA--TATTGAGATTCAAATATTAATTATAGTGAATATTAACAACTTAATATTGTACAC----AG--ACGATG----------ATCTTAATAAA---TGCGCAGAACTCTTATTATGTCTGTTTCAACCCAAACCACCTCAACAC----AGAAACTTGACA--TT-TGATAA----TGAAGTCAATTT--GGG-TAATTATT-GGCAATGGTCAAGACGGTTGTGACACGT-GAAAATACAGATGGTTGTACAATTTCCA-GTCACTTGGAGCTATTACGGACTTCAATCTAT-GAATTGGGGTAA-GAAAT----A---------T-CTA--TAACGTTGCATGTTCTATGTGTAA--TTGCTTGTTAC-AACTGATATTCAGTAACATTCTGTGTATAGTAGTATACAGTGCCA-GG-CT-----C----------------------GAGT-----GACATT----------------TTTCTGAGTT---GATTT-CTATAT-ATCTTGGGAAGTATACGAAATTT-CGGGATGAA--------------GTAAGCTAGT-A-TG--T--A----G----ATGTATGAA------TATA--TTAGAATAACAAAGTAGGAT-TTTATACATGTATCATGTGGTTT-T-G-GTGT-AT-TTTTTTATCGGCGAACTTGGGTACCCTAT------ATTT---A-G----AGTGT-------------T--TTACCTT---TACTG-T---T-AA---ATAATAAATTCAAACCCAAGCGATAT----A------CGCCTGTG
gi|10 : --GAT-CAACCAGATGACACCAGTCAAAATGGTT-CAAGAAGT-GAAAGTGCAGACGGTTTTGCAAT-------------GGAGCTATTGAGGATTTCAGTTCAT-GAATTGGGGTAA-GAGGT--TCAACTTATAAATGCTACTTAATGTTACGAATTCTAT--GTAA--TAGCTTGTTGC-AA-TA-----CAC
gi|11 : GATAA----TGACGTTAATTT--GGT-TGGTTAGT-TGTACCGGCTGAAAT---------AAGT-GAAGTC-CAGACGGTCTTACAATTGTTT-GTCATTTGGAGCTATTAAGGACTTCAATTTATAGAAT---GATAATGA------CA-----------CT---TAATGCCGC-CTTTCTAT-T-CAA--TAGTTTGCAGC-AG-TG-----CACAAAAATttttttatt
gi|12 : AATTTATGGCATGAAATCT-------------GG-TAGT-AGTG--T-------GATGTATATCCGGG------TGTA--TT-GTAT-AT----CAGAAT-TTTA-----AAATCATTTGGTTT-A-T-------------TAACCAGCGAACGTCTGTACCCTGT------ATT-------------------------------------TT---TACTC-C---T-TAATTATAGCAATTTCGAAACCAAGCGATAT----AGAAT--TGCTTGTG
gi|13 : ataaACTATACAGAATGTTAGTGCATTACAAGAA---A-T-TGCATACATGTCA---AATGTTCAACATTAGATAGA-ATTTTGAA-------GTTGAATTTCTCACTCCAATTCATAAACTGAAGTCTGTAATACATGTAGCTCCAAGTGGCTAAA-AATTTTAAAACCGTCAACACTTCCA----CT
gi|14 : ACAAAACAGGGTGTTAGTGCATTGCAACAA-GCAAT-TACATACGT---GTATAATGTTCAACATTAGATATA-ATTTTGAATTTCTAAGTTGAATTGCATACCCCAATTCATTAGGTGAAGT--G----------------AAGTGATTGGA-AATTTTAAAAC
gi|15 : ctagtacaaaTGTGTA------TATA--TCAGAAT-ACTGAGTACAAT-TTT---------TTGTTCGGTTA-A-T-AGTG-GG-TTTTTTATCGGCGAAT----ATACCCT-T-------TCT---ATG----AGTCT-------------G--TTACCTTCAATATGCAT---G-TA---A-AATAATTTCGAATCCAAGAG--AC----A------TGCCTGTG
gi|16 : tgtTTT--GGCGTAATTAGA-GGTGACTCTCAAAATGTCTGTTA-AAGT-GAAAGCGg
gi|16 : GTCACCTCTAATTACGCC-AA--A--ATTTGAAGTTTACCCGTAACTA--T--TGAGG-TCAAATATTCATTTAGATC-------A--ATTCACTATAGTACATGTACAAACATTATGCTAATAACatttgaagtttacccgtaactattgaggtcaaatattcatttagatcaattcactatagtacatgtacaaacattatgctaataactttt
gi|17 : cgctttcactttaacagacattttgagaTTGAT--ATACAAA--ATTGA-TATAGAATAT----AA--ATTGTGCTATTAATGGGCCCTTGTAAA-GATATACACAAATTTTA-T-TATCTATTTGCACCCCTATTATATTAACA-T---AGGTGTTTGATGATTTATtttt
gi|18 : aaaaaTGAGAAGTATACGGAATTT-CGGGATGAA--CTTTGGTCAT--GTTGG-TGGTGA-TG--T--A----GAT---TGCTTGAATTAATGTATA--TCAGAAT-ACAGAATAGAAC-TTTA-----A-ATCATTTGGTTT-ATT-GTTT-GT-TTGTT
gi|19 : tcACGGAATTT-TGTGTTGAA--CT-------T--TT--G-CAGT-AATG--T--A----AAT-TGTTGGTGAA------TATATATTTGAAC-ACAGAGCAGAAT-TT-------AT-TCATT--GTTT-A-T-t
gi|2 : gcagattttgtgtgaAAA-ATTAATTTTGATTGATACTGA---TTCAATGTAGTACAT----AA--ATTATGCTAATAACAGATCTTTA-AAAAGATACACAG--CTCTTAT---GTCTATTTTCATCCAAACCACATTAGCACTTGTAGGTGTTTGATAATTTATGATAG----T-AAGTCCATTT--GGT-TAAT----------CAGTCAAAATGGACATGATGTGT-GAAAGTGTGGACAGCTTTACAATTTTTA-GTCACTTGGAGCTATTACGGACTTTAATTTAT-AAATTCATCT-T-GAAATGATAA---------T-TTA---AGCATTA-ACATTCTATA-ATACCTTTGCTTGTTGCAAA-TG------ACAAACATTTTAT-CAAAGGAGTA-G-AGTACCAGGG-CA-----C----------------------AGGT-----AAAATTCAAATAAAAATAATAGTCTATGA------CATTT-TTGCAT-ACCTTTGGAGGTATACAGAATGC-TGTGATTAA--GT-----------TAAA-TAGTAA-TG--T--AGATTGAT-TATGCATGAA------AATA--TTAAAAA-ACAGAGTAGAAT-TCTA-----A-AACAGTTAGTCT------TTTAAA-TTTTTCGTCGGCGAACTTGGGCACCCTAT------ATTT---A-G----AGATG-------------T--ATTCCTT---TACTC-T---T-TA---ATGGTAAATTCCAACCTA---GATGT----AAT----TGCCTGTGtgattgggg
gi|20 : ATTT--GGT-AAAT-AAA-GGAACCGGTCGAAATG------ACAAGT-GAA-----------TTTT-CATTTTTCAAGTCGCCCTGATCTATGAAAGACTTCATTTTAT-GAA
gi|21 : -TTTTTCATCGGCAAACTTGAGTGCCCTGT------CTTT---A-G----AGTTC-------------T--ACACCTT---TACTC-T---T-T----ACAGTAAATTCGAACCCATGCGATAA----AAT----TGCCAGTaagaaggaat
gi|22 : ACTTAGGTACTCTATTTTAGTATTTTT-A-G----AATTC-------------T--ATACATT---TATTC-T---A-TA---ATAGTTAATTCAAGCCCAAGTGATAT----AAT----TGCATGT
gi|23 : ttT-TTTCTCATCGGTCAACTTGGCTACCCTAT------ATTT---A-G----AGTTC-------------T--ATACCTT---TACTC-T---T-CA---A
gi|24 : atagacagttataaatatcgcaagaagttTTTTGTCGGCGAACTTCAGAACCCTAT------ATCT---A-A----AGTTCAATACATCTACATT--GTACTTG---TACTT-T---T-TA---ATAGTGAACTCAAA
gi|3 : AACTTATTATGGGTTCTCATATCG-TTTAGGGG-TAATTAGA-GGCACCAGTCAAAATGGCTGTGAAAAGTTGAAAACGCAGACGGATTTACAATTTGCA-TTTATTTGGAACTGTTACGGACTTCTATTTAT-AAATTTGGGTAA-GAAATA-TTA---------T-T----TAATGTTGCACATTCTAT---TAA--TGAGTTGTTAC-AA-TG-----CACAAACATTCTA-GC-TAGTGATACA-AATCCCA-GGACC-----CATGCAGATAAATTTCCAATAGAGAGCAAAA-GGCAGT----------------TTTCTGAATT---CATTT-TTGCGT-ATCTTGAAAAGTATATATACGTT-CGGGATG-------------T--ATAGA-T--T---------------GAT-TATGTACGAG------TTTA--ATAGAAT-ACAGAGCGGGAT-TTT------ATATCATTTGGTTG-A-----TT-GT-TTTTTCGTCAGCAAACTTGGGCATCCTAT------TTTTTTGA-GTTCTAGTTC-------------T--ATAGTTT---TACTC-----T-AA---ATGATAAATTCAAACCCAAGCGATAT----ACGTAATTGCCTG
gi|3 : TACATAATC-AATC-------------TATA---CATCCCGAA----CGTATA----TATACTTTTCA-----AG-ATACGCAAAAATGAATTCAGAAAACTGCCT---TTTGCTCTCTAT-TGGAAATTTATCTGCATGGGTCCTGGGATTTG-T------ATCACTAGCTAGAATGTTTGTGCATTGTAACAACTCA-T-TA-ATA------G---AATGTGCAACATTAAATA---AT------------------ATTTCTTACCCAAATTTATAAATAGAAGTCCGTAA------CAGTTCCAAATAAATGCA-AATTGTAAATCCGTCTGCGTTTTCAACTTTTCACAGCCATTTTGACTGGTGCCTCTAATTACCCCTAA--ACGATATGAGA---ACCCATAATAAGTT--TAATACTCAAATATCAATTTT------TA-TAA--ATTCATTATAGTGCA-----------TATG-----------TCTTTAT-AAGGATACAC--AACTTTTGTTCTGTATATTATTATCTAATCCAtaatactcaaatatcaatttttataaattcattatagtgcatatgtctttataaggatacacaacttttgttctgtatattattatctaatcca
gi|4 : caggcaattacgtatatcgcttgggtttgaatttatcatttagagtaaaactatagaactagaactcaaaaaaataggatgcccaagtttgctgacgaaaaaacaatcaaccaaatgatataaaatcccgctctgtattctattaaactcgTTTCG-CTGTGAACTTGGGTAACC--T------ATTA---A-G----AGTTTTA-----------T--ATACCTT---TACTCTT---T-TATT-ATAGTTAATCAAAATCTACGAAATATAATAA------TGTCTGTG
gi|5 : ttttaaaTACACAATC-TATTTATATT--CCTACCAAAGTTCGTCCCGA-------TATTCCA-TATACCTCCCA-----AA-ATATGCAGAA---------------TGCCTCGATT-ATTTT-TAGGTCGACCTTTAGCTG----GG-CTCAGCCCT-AAT------ACCACTCAACAAAATGTttctgaatgaatcaattaaagtcaattatgtaatttttacacacagtctgcagtctccagttcagatgaccagagttctcaaattctactctgtttatttttattttcaaaagttttcttttgcaaaaagtttcagattaaaaaacacctccctctcagtctctaattcattgcctataaaacatgaaaaatccctctccccatcatcagtttttga
gi|5 : ttgcaaaaacgacaggtctTT-CTGCAT-ATTTTGGGAGGTATATGGAATAT-CGGGACGAA--CT-------TTGGTAGG--AAT-A-TAAAT--A----GAT-TGTGTATGAA------TATA--TTAGAAT-ACAGAGTAGAAC-TTTA-----A-ATCATTTGACTT-ATT-GTTT-AT-TGTT------------TTGGGCACGCTAT------ATTT---A-A----AGTTT-------------T--TTACCTT---GACTC-T---A-TG---ACAGTAATTTtgaatatattagaatacagagtagaactttaaatcatttgacttattgtttattgttttgggcacgctatatttaaagttttttaccttgactctatgacagtaatttaacgtaa
gi|6 : ttgcaaaaacgacaggtctacattttgttgagtggtattagggctgagcccagctaaaggtcgacctaaaaataatcgaggca-----C----------------------GAGT-----AGCATC----------------TCCATATATTAAGCATTTTCTTCATTATCTTGGGAAGTATACGGAATTT-CAGGACGA---CT-------TTGGTAGG--AAT-G-TG--G--ATT--GAT-TGTGTATAAA------TATA--TTGGGAT-ACAGAGTGGAAT-TTTA-----A-ATCATTTGGTTT-A-----TT-GT-TTTTTCATTGGC---------------AT------ACTT---C-G----AGCCC-------------T--ATACCTT---TACTC-TAGCTATA---ATAGTAAGTTCTGACCCAAGCGATAC----AAT----TACCTGTGaacgtaa
gi|7 : TGT-AA-TG-----TATAAACATTTTG-GTACACT-GC-CA-AGATCCA-GG-TGAAATTC----------------------GAGCAAAAAGGCATT----------------TTTCTGAATT---CATAT-CTGCAT-ACCTTGGGAAGTATACGGAATTT-CGGGATGAA--CTTACA---T--GTAGG-TGGTAA-TG--TCGATT--GAT-TATGTGTGAA------TATA--TCAGAAT-ACAGAGTAGAAT-TTT------ATATCTCTTCGTTTAA-T-GTTT-TT-T
gi|8 : T-ATCTTACGAAGTATACGCAAGTT-CGGGATGA----C-------T--ATCGA-T----------T--G----G-T-TATGCGTGAA------TATG--TTAGAAT-GCAGAGTAGAATATTT-------TACCATTTGGTAC-A-TTGTTT-GTTTTTTTTATTGGCAAACTTGTGTATTCTTT------ATTC---A-G----AGACC-------------TAGATACCTT---AACTA-C---T-TA---ATTGTAAATCCGAGCCCAAGTAATAC----A------tagcatgtgcatcattagata
gi|9 : G----GGTCCGGGCCTT-A-TGTTTACACTACTATACAGAATGTTAGTGCATTACAAGAAATTG-CATACATA------GTCAAATGTTCAACATTAGAAGGA-ATTT-GAG-------GTTGAATTTCTCACTCCAATTCATAAACTGAAGTCTGTAATACATGTAGCTCCAAGTGGCT-AA-AATTTTAAAACCGTCAACACTTCCA----CTAAC---------gct
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|25 ): ATACTCATTATTGCGAGGTCAAGGTCTATAGCTCCCATGTCACTTCATTTTTCATGGGTATTTCTTCATATC
Alignments
lowQualScore : 1 888888888888 1 33333 2222 3333333 555555555555555555555555 1 11 2222 11 22222222 3333333 666666666 222222222 333333 2222 555555555 1 33333 222 22222 1 333333333333 222222222 33333333333 1 222 33333 2222 111111 7777777777777777777777 2222 11 111111 22222 1111 1 9999999999999999999999999999999999999999999999999999999999 111 7777777777777777777777777777777777777777 111111 33333333 2222222 111111111111 111111111111 1111111
lowQualScore : 3 111111111111 2 0 55555 2222 9999999 444444444444444444444444 1 3 44 3 1 8888 7 44 1 99999999 7 1 1 4444444 3 222222222 0 77 0 999999999 1 1 0 777777 44 8 0 1 1111 333333333 1 1 7 3 44444 333 0 1 77777 2 3 3 444444444444 8 666666666 11111111111 66 9 999 666 11 77777 44 3 1111 8 1 55 77 5 88888 1 0 0 1 333333 8 5 5555 1 777 2 6 44 0 8 3 4444444444444444444444 666 3333 11 1 6 6 777777 00000 7 4444 1 0 5555555555555555555555555555555555555555555555555555555555 3 444 6 5 4 2222222222222222222222222222222222222222 0 4 1 000000 55 3 3 00000000 1111111 4444 1 2 0 0 888888 999 3 6666 1 44 5555 555555555555 888 000000000000 1 0 0 5555555 66
lowQualScore : . ............ . . ..... .... ....... ........................ . . .. . . .... . .. . ........ . . . ....... . ......... . .. . ......... . . . ...... .. . . . .... ......... . . . . ..... ... . . ..... . . . ............ . ......... ........... .. . ... ... .. ..... .. . .... . . .. .. . ..... . . . . ...... . . .... . ... . . .. . . . ...................... ... .... .. . . . ...... ..... . .... . . .......................................................... . ... . . . ........................................ . . . ...... .. . . ........ ....... .... . . . . ...... ... . .... . .. .... ............ ... ............ . . . ....... ..
lowQualScore : 3 333333333333 0 7 77777 7777 0000000 777777777777777777777777 0 3 33 7 0 3333 0 22 0 88888888 5 4 0 4444444 2 666666666 6 66 8 888888888 4 4 8 222222 22 0 6 0 2222 333333333 0 0 3 3 33333 333 7 0 77777 0 2 2 888888888888 8 444444444 77777777777 55 0 000 555 00 33333 00 2 2222 8 0 00 99 7 66666 7 7 4 4 444444 6 7 3333 7 777 5 7 66 8 0 8 2222222222222222222222 666 0000 00 0 7 7 777777 55555 0 5555 0 0 8888888888888888888888888888888888888888888888888888888888 8 000 7 7 0 1111111111111111111111111111111111111111 8 0 8 555555 00 6 6 22222222 3333333 9999 4 3 2 9 888888 666 1 5555 8 22 3333 888888888888 555 222222222222 8 9 7 5555555 11
consensus : TACATAATC-AATC---ATT-CT-CCATAGTTCGTCCCGAA----CGTATACCA-TATACTTCCCAAGATA------CGCAGAAAT-AATTCAGAAAA-TGCC-T---TTANT-TTTAN-TCGAAATTTANC----TGGGTCCC-GGCCCTG-T------ACCACTANACAGAATGTTAGTGCATTGCAANAA-TCG-T-TACATAC---TGT--AATGTTCAACATTAGATANAATTTTG-------AAGTTGAATTTCTTACCCCAATTCATAAACTGAAGTCCGTAATACATGTAGCTCCAAGTGACTGNA-AATTTTAAAACCGTCNGCGCTTCCA----CTCAC---------GNCCGNCGCCTCTAATTACCCC-AA--A-GATATGAGG---ACCCGTAACNA--T--TGAGACTCAAATATTAATTTTGAT--ATACTAA--ATTCANTATAGTACAT-----AA-ATTATGCTAATAACGGATCTTTATAAAGGATACACAGAACTCTTATT-TGTCTATTTTCACCCAAACCACATTAACACT---AGGTGTTTGATAATTTATGATAG----TGANGTCGATTT--GGT-TAATTAGA-GGCACCGGTCGAAATGGCTGTGANAAGT-GAAAGCGCAGACGGTTTTACAATTTTC-AGTCACTTGGAGCTATTACGGACTTCAATTTAT-GAATTNGGGTAA-GAAAT--TCA--T--------CTA--TAACGTTGCACGTTCTAT-TGTAA--TNGCTTGTTGC-AA-TG-----CACAAACATTCTGTGCATAGTAGTACA-AGTNCCA-GG-CN-----C----------------------GAGTAAAA-GGC--AT-----T-----TTTCTGAATT---CATTT-CTGCAT-ATCTTGGGAAGTATACGGAATTT-CGGGATGAA--CT-------T--GTAGG-TAGT-A-TG--T--A----GAT-TATGTGTGAA------TATA--TTAGAAT-ACAGAGTAGAAT-TTTA-----ATATCATTTGGTTT-A-T-GTTT-GT-TTTTTCGTCGGCGAACTTGGGTACCCTAT------ATTT---A-G----AGTTC--T--A-TAC------------CTT---TACTC-T---T-TA---ATAGTAAATTCGAACCCAAGCGATA----T--AAT--TGCCTGTG
Reference ( family-947 ) : TACATAATC-AATC---ATTCCT--CATAGTTCGTCCCGAA----CGTATACCA-TATACTTCCCAAGATA------CGCAGAAAT-AATTCAGAAAA-TGCC-T---TTANT-TTTAN-TCGAAATTTANC----TGGGTCCC-GGCNCTG-T------ACCACTANACAGAATGTTAGTGCATTGCAANAA-TCG-T-TACATAC---TGT--AATGTTCAACATTAGATANAATTTTG-------AAGTTGAATTTCTTACCCCAATTCATAAACTGAAGTCCGTAATACATGTAGCTCCAAGTGACTGNA-AATTTTAAAACCGTCNGCGCTTCCA----CTCAC---------GNCCGNCGCCTCTAATTACCCC-AA--A-GATATGAGG---ACCCGTAACNA--T--TGAGACTCAAATATTAATTTTGAT--ATACTAA--ATTCANTATAGTACAT-----AA-ATTATGCTAATAACGGATCTTTATAAAGGATACACAGAACTCTTATT-TGTCTATTTTCACCCAAACCACATTAACACT---AGGTGTTTGATAATTTATGATAG----TGANGTCGATTT--GGT-TAATTAGA-GGCACCGGTCGAAATGGCTGTGANAAGT-GAAAGCGCAGACGGTTTTACAATTTTC-AGTCACTTGGAGCTATTACGGACTTCAATTTAT-GAATTNGGGTAA-GAAAT--TCA--T--------CTA--TAACGTTGCACGTTCTAT-TGTAA--TNGCTTGTTGC-AA-TG-----CACAAACATTCTGTGCATAGTAGTACA-AGTNCCA-GG-CN-----C----------------------GAGTAAAA-GGC--AT-----T-----TTTCTGAATT---CATTT-CTGCAT-ATCTTGGGAAGTATACGGAATTT-CGGGATGAA--CT-------T--GTAGG-TAGT-A-TG--T--A----GAT-TATGTGTGAA------TATA--TTAGAAT-ACAGAGTAGAAT-TTTA-----ATATCATTTGGTTT-A-T-GTTT-GT-TTTTTCGTCGGCGAACTTGGGTACCCTAT------ATTT---A-G----AGTTC--T--A-TAC------------CTT---TACTC-T---T-TA---ATAGTAAATTCGAACCCAAGCGATA----T--AAT--TGCCTGTG
gi|1 : TACATAATCTAAT----ATTACTTTCATAATTTACCCAGAAATTTCGTATACTAGTATACTTCCCACGATAAGTGTATGCAGAGATCAATTCAGAAAAATACC-TA--TTAGT-TTTAC-TTGAAATTTACT----TGGACCCT-AGCACTG-T------ACTACTA-ACAGAATCTTTGTGAATTGTAAAAA-TAG-T-TGTATA-----G---AATCTGCAACATTAGATATATATTTA-------AAATTAAACTTCTTACCCTATTTTATAAATTGAAGTCCATA------GTAGCTCCAAGTGACTGTATAGTTGCAAAACTGTCTGCGCTATCA----CTCAC---------GCCCGCCGTCTTT--TTACCCC-AACAG-GACAGAAGG---ACCCAAAACGA--TATTGAGATTCAAATATTAATTATAGTGAATATTAACAACTTAATATTGTACAC-----AG-ACGATG----------ATCTTAATAAA---TGCGCAGAACTCTTATTATGTCTGTTTCAACCCAAACCACCTCAACAC----AGAAACTTGACA--TT-TGATAA----TGAAGTCAATTT--GGG-TAATTATT-GGCAATGGTCAAGACGGTTGTGACACGT-GAAAATACAGATGGTTGTACAATTTCC-AGTCACTTGGAGCTATTACGGACTTCAATCTAT-GAATTGGGGTAA-GAAAT----A--T--------CTA--TAACGTTGCATGTTCTATGTGTAA--TTGCTTGTTAC-AACTGATATTCAGTAACATTCTGTGTATAGTAGTATACAGTGCCA-GG-CT-----C----------------------GAGT-----GAC--AT-----T-----TTTCTGAGTT---GATTT-CTATAT-ATCTTGGGAAGTATACGAAATTT-CGGGATGAA--------------GTAAGCTAGT-A-TG--T--A----G----ATGTATGAA------TATA--TTAGAATAACAAAGTAGGAT-TTTATACATGTATCATGTGGTTT-T-G-GTGT-AT-TTTTTTATCGGCGAACTTGGGTACCCTAT------ATTT---A-G----AGTGT--T--T-TAC------------CTT---TACTG-T---T-AA---ATAATAAATTCAAACCCAAGCGATA----T--A----CGCCTGTG
gi|10 : --GAT-CAACCAGATGACACCAGTCAAAATGGTT-CAAGAAGT-GAAAGTGCAGACGGTTTTGCAAT-------------GGAGCTATTGAGGATTTCAGTTCAT-GAATTGGGGTAA-GAGGT--TCAACTTATAAATGCTACTTAATGTTACGAATTCTA--TGTAA--TAGCTTGTTGC-AA-TA-----CAC
gi|11 : GATAA----TGACGTTAATTT--GGT-TGGTTAGT-TGTACCGGCTGAAAT---------AAGT-GAAGTC-CAGACGGTCTTACAATTGTT-TGTCATTTGGAGCTATTAAGGACTTCAATTTATAGAAT---GATAATGA------CA-----------CT---TAATGCCGC-CTTTCTAT-T-CAA--TAGTTTGCAGC-AG-TG-----CACAAAAATttttttatt
gi|12 : AATTTATGGCATGAAATCT-------------GG-TAGT-AGTG--T-------GATGTATATCCGGG------TGTA--TT-GTAT-AT----CAGAAT-TTTA-----AAATCATTTGGTTT-A-T-------------TAACCAGCGAACGTCTGTACCCTGT------ATT---------------------------------------TT---TACTC-C---T-TAATTATAGCAATTTCGAAACCAAGCGATA----TAGAAT--TGCTTGTG
gi|13 : ataaACTATACAGAATGTTAGTGCATTACAAGAA---A-T-TGCATACA--TGTCAAATGTTCAACATTAGATAGAATTTTG-------AAGTTGAATTTCTCACTCCAATTCATAAACTGAAGTCTGTAATACATGTAGCTCCAAGTGGCTAAA-AATTTTAAAACCGTCAACACTTCCA----CT
gi|14 : ACAAAACAGGGTGTTAGTGCATTGCAACAA-GCAAT-TACATACGTGTAT--AATGTTCAACATTAGATATAATTTTGAATTTCTAAGTTGAATTGCATACCCCAATTCATTAGGTGAAGT--G----------------AAGTGATTGGA-AATTTTAAAAC
gi|15 : ctagtacaaaTGTGTA------TATA--TCAGAAT-ACTGAGTACAAT-TTT---------TTGTTCGGTTA-A-T-AGTG-GG-TTTTTTATCGGCGAAT----ATACCCT-T-------TCT---ATG----AG-TC--T--GTTAC------------CTTCAATATGCAT---G-TA---A-AATAATTTCGAATCCAAGAGACA------------TGCCTGTG
gi|16 : tgtTTT--GGCGTAATTAGA-GGTGACTCTCAAAATGTCTGTTA-AAGT-GAAAGCGg
gi|16 : GTCACCTCTAATTACGCC-AA--A--ATTTGAAGTTTACCCGTAACTA--T--TGAGG-TCAAATATTCATTTAGAT-----C--A--ATTCACTATAGTACATGTACAAACATTATGCTAATAACatttgaagtttacccgtaactattgaggtcaaatattcatttagatcaattcactatagtacatgtacaaacattatgctaataactttt
gi|17 : cgctttcactttaacagacattttgagaTTGAT--ATACAAA--ATTGA-TATAGAATAT-----AA-ATTGTGCTATTAATGGGCCCTTGTAAA-GATATACACAAATTTTA-T-TATCTATTTGCACCCCTATTATATTAACA-T---AGGTGTTTGATGATTTATtttt
gi|18 : aaaaaTGAGAAGTATACGGAATTT-CGGGATGAA--CTTTGGTCAT--GTTGG-TGGTGA-TG--T--A----GAT---TGCTTGAATTAATGTATA--TCAGAAT-ACAGAATAGAAC-TTTA-----A-ATCATTTGGTTT-ATT-GTTT-GT-TTGTT
gi|19 : tcACGGAATTT-TGTGTTGAA--CT-------T--TT--G-CAGT-AATG--T--A----AAT-TGTTGGTGAA------TATATATTTGAAC-ACAGAGCAGAAT-TT-------AT-TCATT--GTTT-A-T-t
gi|2 : gcagattttgtgtgaAAA-ATTAATTTTGATTGATACTGA---TTCAATGTAGTACAT-----AA-ATTATGCTAATAACAGATCTTTA-AAAAGATACACAG--CTCTTAT---GTCTATTTTCATCCAAACCACATTAGCACTTGTAGGTGTTTGATAATTTATGATAG----T-AAGTCCATTT--GGT-TAAT----------CAGTCAAAATGGACATGATGTGT-GAAAGTGTGGACAGCTTTACAATTTTT-AGTCACTTGGAGCTATTACGGACTTTAATTTAT-AAATTCATCT-T-GAAATGATAA--T--------TTA---AGCATTA-ACATTCTAT-AATACCTTTGCTTGTTGCAAA-TG------ACAAACATTTTAT-CAAAGGAGTA-G-AGTACCAGGG-CA-----C----------------------AGGTAAAA-TTCAAATAAAAATAATAGTCTATGA------CATTT-TTGCAT-ACCTTTGGAGGTATACAGAATGC-TGTGATTAA--GT-----------TAAA-TAGTAA-TG--T--AGATTGAT-TATGCATGAA------AATA--TTAAAAA-ACAGAGTAGAAT-TCTA-----A-AACAGTTAGTCT------TTTAAA-TTTTTCGTCGGCGAACTTGGGCACCCTAT------ATTT---A-G----AGATG--T--A-TTC------------CTT---TACTC-T---T-TA---ATGGTAAATTCCAACCTA---GATG----T--AAT--TGCCTGTGtgattgggg
gi|20 : ATTT--GGT-AAAT-AAA-GGAACCGGTCGAAA------TGACAAGT-GAA-----------TTTT-CATTTTTCAAGTCGCCCTGATCTATGAAAGACTTCATTTTAT-GAA
gi|21 : -TTTTTCATCGGCAAACTTGAGTGCCCTGT------CTTT---A-G----AGTTC--T--A-CAC------------CTT---TACTC-T---T-T----ACAGTAAATTCGAACCCATGCGATA----A--AAT--TGCCAGTaagaaggaat
gi|22 : ACTTAGGTACTCTATTTTAGTATTTTT-A-G----AATTC--T--A-TAC------------ATT---TATTC-T---A-TA---ATAGTTAATTCAAGCCCAAGTGATA----T--AAT--TGCATGT
gi|23 : ttT-TTTCTCATCGGTCAACTTGGCTACCCTAT------ATTT---A-G----AGTTC--T--A-TAC------------CTT---TACTC-T---T-CA---A
gi|24 : atagacagttataaatatcgcaagaagttTTTTGTCGGCGAACTTCAGAACCCTAT------ATCT---A-A----AGTTC--A--A-TACATCTACATTGTACTTG--TACTT-T---T-TA---ATAGTGAACTCAAA
gi|3 : AACTTATTATGGGTTCTCATATCG-TTTAGGGG-TAATTAGA-GGCACCAGTCAAAATGGCTGTGAAAAGTTGAAAACGCAGACGGATTTACAATTTGC-ATTTATTTGGAACTGTTACGGACTTCTATTTAT-AAATTTGGGTAA-GAAATA-TTA--T--------T----TAATGTTGCACATTCTAT---TAA--TGAGTTGTTAC-AA-TG-----CACAAACATTCTA-GC-TAGTGATACA-AATCCCA-GGACC-----CATGCAGATAAATTTCCAATAGAGAGCAAAA-GGC--AG-----T-----TTTCTGAATT---CATTT-TTGCGT-ATCTTGAAAAGTATATATACGTT-CGGGATG-------------T--ATAGA-T--T---------------GAT-TATGTACGAG------TTTA--ATAGAAT-ACAGAGCGGGAT-TTT------ATATCATTTGGTTG-A-----TT-GT-TTTTTCGTCAGCAAACTTGGGCATCCTAT------TTTTTTGA-GTTCTAGTTC--T--A-TAG------------TTT---TACTC-----T-AA---ATGATAAATTCAAACCCAAGCGATATACGT--AAT--TGCCTG
gi|3 : TACATAATC-AATC-----------TATA---CATCCCGAA----CGTATA----TATACTTTTCAAGATA------CGCAAAAATGAATTCAGAAAACTGCCTT---TTGCTCTCTAT-TGGAAATTTATCTGCATGGGTCCTGGGATTTG-T------ATCACTAGCTAGAATGTTTGTGCATTGTAACAACTCA-T-TA-ATA-----G---AATGTGCAACATTAAAT--AAT------------------ATTTCTTACCCAAATTTATAAATAGAAGTCCGTAA------CAGTTCCAAATAAATGCA-AATTGTAAATCCGTCTGCGTTTTCAACTTTTCACAGCCATTTTGACTGGTGCCTCTAATTACCCCTAA--ACGATATGAGA---ACCCATAATAAGTT--TAATACTCAAATATCAATTTT--T--A---TAA--ATTCATTATAGTGCA-----------TATG-----------TCTTTAT-AAGGATACAC--AACTTTTGTTCTGTATATTATTATCTAATCCAtaatactcaaatatcaatttttataaattcattatagtgcatatgtctttataaggatacacaacttttgttctgtatattattatctaatcca
gi|4 : caggcaattacgtatatcgcttgggtttgaatttatcatttagagtaaaactatagaactagaactcaaaaaaataggatgcccaagtttgctgacgaaaaaacaatcaaccaaatgatataaaatcccgctctgtattctattaaactcgTTTCG-CTGTGAACTTGGGTAACC--T------ATTA---A-G----AGTTTTAT--A-TAC------------CTT---TACTCTT---T-TATT-ATAGTTAATCAAAATCTACGAAATA----T--AATAATGTCTGTG
gi|5 : ttttaaaTACACAATC-TATTTATATTCCTACCAAAGTTCGTCCCGA-------TATTCCA-TATACCTCCCAAAATA------TGCAGAA---------------TGCC-TCGATTATT-TTTAGGTCGACCTTTAGC----TGGG-CTC-AGCCCTAAT------ACCACTCAACAAAATGTttctgaatgaatcaattaaagtcaattatgtaatttttacacacagtctgcagtctccagttcagatgaccagagttctcaaattctactctgtttatttttattttcaaaagttttcttttgcaaaaagtttcagattaaaaaacacctccctctcagtctctaattcattgcctataaaacatgaaaaatccctctccccatcatcagtttttga
gi|5 : ttgcaaaaacgacaggtctTT-CTGCAT-ATTTTGGGAGGTATATGGAATAT-CGGGACGAA--CT-------TTGGTAGG--AAT-A-TAAAT--A----GAT-TGTGTATGAA------TATA--TTAGAAT-ACAGAGTAGAAC-TTTA-----A-ATCATTTGACTT-ATT-GTTT-AT-TGTT------------TTGGGCACGCTAT------ATTT---A-A----AGTTT--T--T-TAC------------CTT---GACTC-T---A-TG---ACAGTAATTTtgaatatattagaatacagagtagaactttaaatcatttgacttattgtttattgttttgggcacgctatatttaaagttttttaccttgactctatgacagtaatttaacgtaa
gi|6 : ttgcaaaaacgacaggtctacattttgttgagtggtattagggctgagcccagctaaaggtcgacctaaaaataatcgaggca-----C----------------------GAGTA-----GC--AT-----C-----TCCATATATTAAGCATTTTCTTCATTATCTTGGGAAGTATACGGAATTT-CAGGACGA---CT-------TTGGTAGG--AAT-G-TG--G--ATT--GAT-TGTGTATAAA------TATA--TTGGGAT-ACAGAGTGGAAT-TTTA-----A-ATCATTTGGTTT-A-----TT-GT-TTTTTCATTGGC---------------AT------ACTT---C-G----AGCCC--T--A-TAC------------CTT---TACTC-TAGCTATA---ATAGTAAGTTCTGACCCAAGCGATA----C--AAT--TACCTGTGaacgtaa
gi|7 : TGT-AA-TG-----TATAAACATTTTG-GTACACT-GC-CA-AGATCCA-GG-TGAAATTC----------------------GAGCAAAAAGGC--AT-----T-----TTTCTGAATT---CATAT-CTGCAT-ACCTTGGGAAGTATACGGAATTT-CGGGATGAA--CTTACA---T--GTAGG-TGGTAA-TG--TCGATT--GAT-TATGTGTGAA------TATA--TCAGAAT-ACAGAGTAGAAT-TTT------ATATCTCTTCGTTTAA-T-GTTT-TT-T
gi|8 : T-ATCTTACGAAGTATACGCAAGTT-CGGGATGA----C-------T--ATCGA-T----------T--G----G-T-TATGCGTGAA------TATG--TTAGAAT-GCAGAGTAGAATATTT-------TACCATTTGGTAC-A-TTGTTT-GTTTTTTTTATTGGCAAACTTGTGTATTCTTT------ATTC---A-G----AGACC--TAGA-TAC------------CTT---AACTA-C---T-TA---ATTGTAAATCCGAGCCCAAGTAATA----C--Atagcatgtgcatcattagata
gi|9 : GGGTCCG-GGCCTTA-TGTTTACACTACTATACAGAATGTTAGTGCATTACAAGAAATTG-CATACATAG---TCA--AATGTTCAACATTAGAAGGAATTT-G-------AGGTTGAATTTCTCACTCCAATTCATAAACTGAAGTCTGTAATACATGTAGCTCCAAGTGGCT-AA-AATTTTAAAACCGTCAACACTTCCA----CTAAC---------gct
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|25 ): ATACTCATTATTGCGAGGTCAAGGTCTATAGCTCCCATGTCACTTCATTTTTCATGGGTATTTCTTCATATC
Alignments
lowQualScore : 1 88888888888888 1 33333 2222 3333333 444444444444444 333 1 1 11 2222 11 22222222 3333333 666666666 222222222 333333 2222 555555555 1 33333 222 22222 1 333333333333 222222222 33333333333 1 222 33333 2222 111111 7777777777777777777777 2222 11 111111 22222 1111 1 9999999999999999999999999999999999999999999999999999999999 111 7777777777777777777777777777777777777777 111111 33333333 2222222 111111111111 111111111111 1111111
lowQualScore : 3 88888888888888 2 0 55555 2222 9999999 777777777777777 666 3 1 3 44 3 1 1111 7 4 00 99999999 7 1 1 4444444 3 222222222 0 77 0 999999999 1 1 0 777777 44 8 0 1 1111 333333333 1 1 7 3 44444 333 0 1 77777 2 3 3 444444444444 8 666666666 11111111111 66 9 999 666 11 77777 44 3 1111 8 1 55 77 5 88888 1 0 0 1 333333 8 5 5555 1 777 2 6 44 0 8 3 4444444444444444444444 666 3333 11 1 6 6 777777 00000 7 4444 1 0 5555555555555555555555555555555555555555555555555555555555 3 444 6 5 4 2222222222222222222222222222222222222222 0 4 1 000000 55 3 3 00000000 1111111 4444 1 2 0 0 888888 999 3 6666 1 44 5555 555555555555 888 000000000000 1 0 0 5555555 66
lowQualScore : . .............. . . ..... .... ....... ............... ... . . . .. . . .... . . .. ........ . . . ....... . ......... . .. . ......... . . . ...... .. . . . .... ......... . . . . ..... ... . . ..... . . . ............ . ......... ........... .. . ... ... .. ..... .. . .... . . .. .. . ..... . . . . ...... . . .... . ... . . .. . . . ...................... ... .... .. . . . ...... ..... . .... . . .......................................................... . ... . . . ........................................ . . . ...... .. . . ........ ....... .... . . . . ...... ... . .... . .. .... ............ ... ............ . . . ....... ..
lowQualScore : 3 77777777777777 0 7 77777 7777 0000000 333333333333333 777 3 0 3 33 7 0 2222 0 2 22 88888888 5 4 0 4444444 2 666666666 6 66 8 888888888 4 4 8 222222 22 0 6 0 2222 333333333 0 0 3 3 33333 333 7 0 77777 0 2 2 888888888888 8 444444444 77777777777 55 0 000 555 00 33333 00 2 2222 8 0 00 99 7 66666 7 7 4 4 444444 6 7 3333 7 777 5 7 66 8 0 8 2222222222222222222222 666 0000 00 0 7 7 777777 55555 0 5555 0 0 8888888888888888888888888888888888888888888888888888888888 8 000 7 7 0 1111111111111111111111111111111111111111 8 0 8 555555 00 6 6 22222222 3333333 9999 4 3 2 9 888888 666 1 5555 8 22 3333 888888888888 555 222222222222 8 9 7 5555555 11
consensus : TACATAATC-AATC---ATT--CC--CCATAGTTCGTCCCGAA----CGTATACCA-TATACTTCCCAAGATA------CGCAGAAAT-AATTCAGAAAA-TGCCT---TT-ANTTT-TAN-TCGAAATTTANCTG----GGTCCCGGC-CCTG-T------ACCACTANACAGAATGTTAGTGCATTGCAANAA-TCG-T-TACATAC---TGT--AATGTTCAACATTAGATANAATTTTG-------AAGTTGAATTTCTTACCCCAATTCATAAACTGAAGTCCGTAATACATGTAGCTCCAAGTGACTGNA-AATTTTAAAACCGTCNGCGCTTCCA----CTCAC---------GNCCGNCGCCTCTAATTACCCC-AA--A-GATATGAGG---ACCCGTAACNA--T--TGAGACTCAAATATTAATTTTGAT--ATACTAA--ATTCANTATAGTACAT-----AA-ATTATGCTAATAACGGATCTTTATAAAGGATACACAGAACTCTTATT-TGTCTATTTTCACCCAAACCACATTAACACT---AGGTGTTTGATAATTTATGATAG----TGANGTCGATTT--GGT-TAATTAGA-GGCACCGGTCGAAATGGCTGTGANAAGT-GAAAGCGCAGACGGTTTTACAATTTTC-AGTCACTTGGAGCTATTACGGACTTCAATTTAT-GAATTNGGGTAA-GAAAT--TCA--T--------CTA--TAACGTTGCACGTTCTAT-TGTAA--TNGCTTGTTGC-AA-TG-----CACAAACATTCTGTGCATAGTAGTACA-AGTNCCA-GG-CN-----C----------------------GAGTAAAA-GGC--AT-----T-----TTTCTGAATT---CATTT-CTGCAT-ATCTTGGGAAGTATACGGAATTT-CGGGATGAA--CT-------T--GTAGG-TAGT-A-TG--T--A----GAT-TATGTGTGAA------TATA--TTAGAAT-ACAGAGTAGAAT-TTTA-----ATATCATTTGGTTT-A-T-GTTT-GT-TTTTTCGTCGGCGAACTTGGGTACCCTAT------ATTT---A-G----AGTTC--T--A-TAC------------CTT---TACTC-T---T-TA---ATAGTAAATTCGAACCCAAGCGATA----T--AAT--TGCCTGTG
Reference ( family-947 ) : TACATAATC-AATC---ATT--CT--CCATAGTTCGTCCCGAA----CGTATACCA-TATACTTCCCAAGATA------CGCAGAAAT-AATTCAGAAAA-TGCCT---TT-ANTTT-TAN-TCGAAATTTANCTG----GGTCCCGGC-CCTG-T------ACCACTANACAGAATGTTAGTGCATTGCAANAA-TCG-T-TACATAC---TGT--AATGTTCAACATTAGATANAATTTTG-------AAGTTGAATTTCTTACCCCAATTCATAAACTGAAGTCCGTAATACATGTAGCTCCAAGTGACTGNA-AATTTTAAAACCGTCNGCGCTTCCA----CTCAC---------GNCCGNCGCCTCTAATTACCCC-AA--A-GATATGAGG---ACCCGTAACNA--T--TGAGACTCAAATATTAATTTTGAT--ATACTAA--ATTCANTATAGTACAT-----AA-ATTATGCTAATAACGGATCTTTATAAAGGATACACAGAACTCTTATT-TGTCTATTTTCACCCAAACCACATTAACACT---AGGTGTTTGATAATTTATGATAG----TGANGTCGATTT--GGT-TAATTAGA-GGCACCGGTCGAAATGGCTGTGANAAGT-GAAAGCGCAGACGGTTTTACAATTTTC-AGTCACTTGGAGCTATTACGGACTTCAATTTAT-GAATTNGGGTAA-GAAAT--TCA--T--------CTA--TAACGTTGCACGTTCTAT-TGTAA--TNGCTTGTTGC-AA-TG-----CACAAACATTCTGTGCATAGTAGTACA-AGTNCCA-GG-CN-----C----------------------GAGTAAAA-GGC--AT-----T-----TTTCTGAATT---CATTT-CTGCAT-ATCTTGGGAAGTATACGGAATTT-CGGGATGAA--CT-------T--GTAGG-TAGT-A-TG--T--A----GAT-TATGTGTGAA------TATA--TTAGAAT-ACAGAGTAGAAT-TTTA-----ATATCATTTGGTTT-A-T-GTTT-GT-TTTTTCGTCGGCGAACTTGGGTACCCTAT------ATTT---A-G----AGTTC--T--A-TAC------------CTT---TACTC-T---T-TA---ATAGTAAATTCGAACCCAAGCGATA----T--AAT--TGCCTGTG
gi|1 : TACATAATCTAAT----ATTACTT--TCATAATTTACCCAGAAATTTCGTATACTAGTATACTTCCCACGATAAGTGTATGCAGAGATCAATTCAGAAAAATACCTA--TT-AGTTT-TAC-TTGAAATTTACTTG----GACCCTAGC-ACTG-T------ACTACTA-ACAGAATCTTTGTGAATTGTAAAAA-TAG-T-TGTATA-----G---AATCTGCAACATTAGATATATATTTA-------AAATTAAACTTCTTACCCTATTTTATAAATTGAAGTCCATA------GTAGCTCCAAGTGACTGTATAGTTGCAAAACTGTCTGCGCTATCA----CTCAC---------GCCCGCCGTCTTT--TTACCCC-AACAG-GACAGAAGG---ACCCAAAACGA--TATTGAGATTCAAATATTAATTATAGTGAATATTAACAACTTAATATTGTACAC-----AG-ACGATG----------ATCTTAATAAA---TGCGCAGAACTCTTATTATGTCTGTTTCAACCCAAACCACCTCAACAC----AGAAACTTGACA--TT-TGATAA----TGAAGTCAATTT--GGG-TAATTATT-GGCAATGGTCAAGACGGTTGTGACACGT-GAAAATACAGATGGTTGTACAATTTCC-AGTCACTTGGAGCTATTACGGACTTCAATCTAT-GAATTGGGGTAA-GAAAT----A--T--------CTA--TAACGTTGCATGTTCTATGTGTAA--TTGCTTGTTAC-AACTGATATTCAGTAACATTCTGTGTATAGTAGTATACAGTGCCA-GG-CT-----C----------------------GAGT-----GAC--AT-----T-----TTTCTGAGTT---GATTT-CTATAT-ATCTTGGGAAGTATACGAAATTT-CGGGATGAA--------------GTAAGCTAGT-A-TG--T--A----G----ATGTATGAA------TATA--TTAGAATAACAAAGTAGGAT-TTTATACATGTATCATGTGGTTT-T-G-GTGT-AT-TTTTTTATCGGCGAACTTGGGTACCCTAT------ATTT---A-G----AGTGT--T--T-TAC------------CTT---TACTG-T---T-AA---ATAATAAATTCAAACCCAAGCGATA----T--A----CGCCTGTG
gi|10 : --GAT-CAACCAGATGACACCAGTCAAAATGGTT-CAAGAAGT-GAAAGTGCAGACGGTTTTGCAAT-------------GGAGCTATTGAGGATTTCAGTTCAT-GAATTGGGGTAA-GAGGT--TCAACTTATAAATGCTACTTAATGTTACGAATTCTA--TGTAA--TAGCTTGTTGC-AA-TA-----CAC
gi|11 : GATAA----TGACGTTAATTT--GGT-TGGTTAGT-TGTACCGGCTGAAAT---------AAGT-GAAGTC-CAGACGGTCTTACAATTGTT-TGTCATTTGGAGCTATTAAGGACTTCAATTTATAGAAT---GATAATGA------CA-----------CT---TAATGCCGC-CTTTCTAT-T-CAA--TAGTTTGCAGC-AG-TG-----CACAAAAATttttttatt
gi|12 : AATTTATGGCATGAAATCT-------------GG-TAGT-AGTG--T-------GATGTATATCCGGG------TGTA--TT-GTAT-AT----CAGAAT-TTTA-----AAATCATTTGGTTT-A-T-------------TAACCAGCGAACGTCTGTACCCTGT------ATT---------------------------------------TT---TACTC-C---T-TAATTATAGCAATTTCGAAACCAAGCGATA----TAGAAT--TGCTTGTG
gi|13 : ataaACTATACAGAATGTTAGTGCATTACAAGAA---A-T-TGCATACA--TGTCAAATGTTCAACATTAGATAGAATTTTG-------AAGTTGAATTTCTCACTCCAATTCATAAACTGAAGTCTGTAATACATGTAGCTCCAAGTGGCTAAA-AATTTTAAAACCGTCAACACTTCCA----CT
gi|14 : ACAAAACAGGGTGTTAGTGCATTGCAACAA-GCAAT-TACATACGTGTAT--AATGTTCAACATTAGATATAATTTTGAATTTCTAAGTTGAATTGCATACCCCAATTCATTAGGTGAAGT--G----------------AAGTGATTGGA-AATTTTAAAAC
gi|15 : ctagtacaaaTGTGTA------TATA--TCAGAAT-ACTGAGTACAAT-TTT---------TTGTTCGGTTA-A-T-AGTG-GG-TTTTTTATCGGCGAAT----ATACCCT-T-------TCT---ATG----AG-TC--T--GTTAC------------CTTCAATATGCAT---G-TA---A-AATAATTTCGAATCCAAGAGACA------------TGCCTGTG
gi|16 : tgtTTT--GGCGTAATTAGA-GGTGACTCTCAAAATGTCTGTTA-AAGT-GAAAGCGg
gi|16 : GTCACCTCTAATTACGCC-AA--A--ATTTGAAGTTTACCCGTAACTA--T--TGAGG-TCAAATATTCATTTAGAT-----C--A--ATTCACTATAGTACATGTACAAACATTATGCTAATAACatttgaagtttacccgtaactattgaggtcaaatattcatttagatcaattcactatagtacatgtacaaacattatgctaataactttt
gi|17 : cgctttcactttaacagacattttgagaTTGAT--ATACAAA--ATTGA-TATAGAATAT-----AA-ATTGTGCTATTAATGGGCCCTTGTAAA-GATATACACAAATTTTA-T-TATCTATTTGCACCCCTATTATATTAACA-T---AGGTGTTTGATGATTTATtttt
gi|18 : aaaaaTGAGAAGTATACGGAATTT-CGGGATGAA--CTTTGGTCAT--GTTGG-TGGTGA-TG--T--A----GAT---TGCTTGAATTAATGTATA--TCAGAAT-ACAGAATAGAAC-TTTA-----A-ATCATTTGGTTT-ATT-GTTT-GT-TTGTT
gi|19 : tcACGGAATTT-TGTGTTGAA--CT-------T--TT--G-CAGT-AATG--T--A----AAT-TGTTGGTGAA------TATATATTTGAAC-ACAGAGCAGAAT-TT-------AT-TCATT--GTTT-A-T-t
gi|2 : gcagattttgtgtgaAAA-ATTAATTTTGATTGATACTGA---TTCAATGTAGTACAT-----AA-ATTATGCTAATAACAGATCTTTA-AAAAGATACACAG--CTCTTAT---GTCTATTTTCATCCAAACCACATTAGCACTTGTAGGTGTTTGATAATTTATGATAG----T-AAGTCCATTT--GGT-TAAT----------CAGTCAAAATGGACATGATGTGT-GAAAGTGTGGACAGCTTTACAATTTTT-AGTCACTTGGAGCTATTACGGACTTTAATTTAT-AAATTCATCT-T-GAAATGATAA--T--------TTA---AGCATTA-ACATTCTAT-AATACCTTTGCTTGTTGCAAA-TG------ACAAACATTTTAT-CAAAGGAGTA-G-AGTACCAGGG-CA-----C----------------------AGGTAAAA-TTCAAATAAAAATAATAGTCTATGA------CATTT-TTGCAT-ACCTTTGGAGGTATACAGAATGC-TGTGATTAA--GT-----------TAAA-TAGTAA-TG--T--AGATTGAT-TATGCATGAA------AATA--TTAAAAA-ACAGAGTAGAAT-TCTA-----A-AACAGTTAGTCT------TTTAAA-TTTTTCGTCGGCGAACTTGGGCACCCTAT------ATTT---A-G----AGATG--T--A-TTC------------CTT---TACTC-T---T-TA---ATGGTAAATTCCAACCTA---GATG----T--AAT--TGCCTGTGtgattgggg
gi|20 : ATTT--GGT-AAAT-AAA-GGAACCGGTCGAAA------TGACAAGT-GAA-----------TTTT-CATTTTTCAAGTCGCCCTGATCTATGAAAGACTTCATTTTAT-GAA
gi|21 : -TTTTTCATCGGCAAACTTGAGTGCCCTGT------CTTT---A-G----AGTTC--T--A-CAC------------CTT---TACTC-T---T-T----ACAGTAAATTCGAACCCATGCGATA----A--AAT--TGCCAGTaagaaggaat
gi|22 : ACTTAGGTACTCTATTTTAGTATTTTT-A-G----AATTC--T--A-TAC------------ATT---TATTC-T---A-TA---ATAGTTAATTCAAGCCCAAGTGATA----T--AAT--TGCATGT
gi|23 : ttT-TTTCTCATCGGTCAACTTGGCTACCCTAT------ATTT---A-G----AGTTC--T--A-TAC------------CTT---TACTC-T---T-CA---A
gi|24 : atagacagttataaatatcgcaagaagttTTTTGTCGGCGAACTTCAGAACCCTAT------ATCT---A-A----AGTTC--A--A-TACATCTACATTGTACTTG--TACTT-T---T-TA---ATAGTGAACTCAAA
gi|3 : AACTTATTATGGGTTCTCATATCG-TTTAGGGG-TAATTAGA-GGCACCAGTCAAAATGGCTGTGAAAAGTTGAAAACGCAGACGGATTTACAATTTGC-ATTTATTTGGAACTGTTACGGACTTCTATTTAT-AAATTTGGGTAA-GAAATA-TTA--T--------T----TAATGTTGCACATTCTAT---TAA--TGAGTTGTTAC-AA-TG-----CACAAACATTCTA-GC-TAGTGATACA-AATCCCA-GGACC-----CATGCAGATAAATTTCCAATAGAGAGCAAAA-GGC--AG-----T-----TTTCTGAATT---CATTT-TTGCGT-ATCTTGAAAAGTATATATACGTT-CGGGATG-------------T--ATAGA-T--T---------------GAT-TATGTACGAG------TTTA--ATAGAAT-ACAGAGCGGGAT-TTT------ATATCATTTGGTTG-A-----TT-GT-TTTTTCGTCAGCAAACTTGGGCATCCTAT------TTTTTTGA-GTTCTAGTTC--T--A-TAG------------TTT---TACTC-----T-AA---ATGATAAATTCAAACCCAAGCGATATACGT--AAT--TGCCTG
gi|3 : TACATAATC-AATC-------------TATA---CATCCCGAA----CGTATA----TATACTTTTCAAGATA------CGCAAAAATGAATTCAGAAAACTGCCT---TTTGCTCTCTAT-TGGAAATTTATCTGCATGGGTCCTGGGATTTG-T------ATCACTAGCTAGAATGTTTGTGCATTGTAACAACTCA-T-TA-ATA-----G---AATGTGCAACATTAAAT--AAT------------------ATTTCTTACCCAAATTTATAAATAGAAGTCCGTAA------CAGTTCCAAATAAATGCA-AATTGTAAATCCGTCTGCGTTTTCAACTTTTCACAGCCATTTTGACTGGTGCCTCTAATTACCCCTAA--ACGATATGAGA---ACCCATAATAAGTT--TAATACTCAAATATCAATTTT--T--A---TAA--ATTCATTATAGTGCA-----------TATG-----------TCTTTAT-AAGGATACAC--AACTTTTGTTCTGTATATTATTATCTAATCCAtaatactcaaatatcaatttttataaattcattatagtgcatatgtctttataaggatacacaacttttgttctgtatattattatctaatcca
gi|4 : caggcaattacgtatatcgcttgggtttgaatttatcatttagagtaaaactatagaactagaactcaaaaaaataggatgcccaagtttgctgacgaaaaaacaatcaaccaaatgatataaaatcccgctctgtattctattaaactcgTTTCG-CTGTGAACTTGGGTAACC--T------ATTA---A-G----AGTTTTAT--A-TAC------------CTT---TACTCTT---T-TATT-ATAGTTAATCAAAATCTACGAAATA----T--AATAATGTCTGTG
gi|5 : ttttaaaTACACAATC-TATTTATATT--CCTACCAAAGTTCGTCCCGA-------TATTCCA-TATACCTCCCAAAATA------TGCAGAA---------------TGCCTCGATT-ATTTT-TAGGTCGACCTTTAGCTG----GG-CTCAGC-CCTAAT------ACCACTCAACAAAATGTttctgaatgaatcaattaaagtcaattatgtaatttttacacacagtctgcagtctccagttcagatgaccagagttctcaaattctactctgtttatttttattttcaaaagttttcttttgcaaaaagtttcagattaaaaaacacctccctctcagtctctaattcattgcctataaaacatgaaaaatccctctccccatcatcagtttttga
gi|5 : ttgcaaaaacgacaggtctTT-CTGCAT-ATTTTGGGAGGTATATGGAATAT-CGGGACGAA--CT-------TTGGTAGG--AAT-A-TAAAT--A----GAT-TGTGTATGAA------TATA--TTAGAAT-ACAGAGTAGAAC-TTTA-----A-ATCATTTGACTT-ATT-GTTT-AT-TGTT------------TTGGGCACGCTAT------ATTT---A-A----AGTTT--T--T-TAC------------CTT---GACTC-T---A-TG---ACAGTAATTTtgaatatattagaatacagagtagaactttaaatcatttgacttattgtttattgttttgggcacgctatatttaaagttttttaccttgactctatgacagtaatttaacgtaa
gi|6 : ttgcaaaaacgacaggtctacattttgttgagtggtattagggctgagcccagctaaaggtcgacctaaaaataatcgaggca-----C----------------------GAGTA-----GC--AT-----C-----TCCATATATTAAGCATTTTCTTCATTATCTTGGGAAGTATACGGAATTT-CAGGACGA---CT-------TTGGTAGG--AAT-G-TG--G--ATT--GAT-TGTGTATAAA------TATA--TTGGGAT-ACAGAGTGGAAT-TTTA-----A-ATCATTTGGTTT-A-----TT-GT-TTTTTCATTGGC---------------AT------ACTT---C-G----AGCCC--T--A-TAC------------CTT---TACTC-TAGCTATA---ATAGTAAGTTCTGACCCAAGCGATA----C--AAT--TACCTGTGaacgtaa
gi|7 : TGT-AA-TG-----TATAAACATTTTG-GTACACT-GC-CA-AGATCCA-GG-TGAAATTC----------------------GAGCAAAAAGGC--AT-----T-----TTTCTGAATT---CATAT-CTGCAT-ACCTTGGGAAGTATACGGAATTT-CGGGATGAA--CTTACA---T--GTAGG-TGGTAA-TG--TCGATT--GAT-TATGTGTGAA------TATA--TCAGAAT-ACAGAGTAGAAT-TTT------ATATCTCTTCGTTTAA-T-GTTT-TT-T
gi|8 : T-ATCTTACGAAGTATACGCAAGTT-CGGGATGA----C-------T--ATCGA-T----------T--G----G-T-TATGCGTGAA------TATG--TTAGAAT-GCAGAGTAGAATATTT-------TACCATTTGGTAC-A-TTGTTT-GTTTTTTTTATTGGCAAACTTGTGTATTCTTT------ATTC---A-G----AGACC--TAGA-TAC------------CTT---AACTA-C---T-TA---ATTGTAAATCCGAGCCCAAGTAATA----C--Atagcatgtgcatcattagata
gi|9 : G----GGTCCGGGC-CTTA-TGTTTACACTACTATACAGAATGTTAGTGCATTACAAGAAATTG-CATACATAG---TCA--AATGTTCAACATTAGAAGGAATTT-G-------AGGTTGAATTTCTCACTCCAATTCATAAACTGAAGTCTGTAATACATGTAGCTCCAAGTGGCT-AA-AATTTTAAAACCGTCAACACTTCCA----CTAAC---------gct
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|25 ): ATACTCATTATTGCGAGGTCAAGGTCTATAGCTCCCATGTCACTTCATTTTTCATGGGTATTTCTTCATATC
Alignments
lowQualScore : 1 88888888888888 1 33333 2222 3333333 444444444444444 333 1 1 11 2222 11 22222222 3333333 666666666 222222222 333333 2222 555555555 1 33333 222 22222 1 333333333333 222222222 33333333333 1 222 33333 2222 111111 7777777777777777777777 2222 11 111111 22222 1111 1 9999999999999999999999999999999999999999999999999999999999 111 7777777777777777777777777777777777777777 111111 33333333 2222222 111111111111 111111111111 1111111
lowQualScore : 3 66666666666666 2 0 55555 2222 9999999 777777777777777 666 3 1 3 44 3 1 1111 7 4 00 99999999 7 1 1 4444444 3 222222222 0 77 0 999999999 1 1 0 777777 44 8 0 1 1111 333333333 1 1 7 3 44444 333 0 1 77777 2 3 3 444444444444 8 666666666 11111111111 66 9 999 666 11 77777 44 3 1111 8 1 55 77 5 88888 1 0 0 1 333333 8 5 5555 1 777 2 6 44 0 8 3 4444444444444444444444 666 3333 11 1 6 6 777777 00000 7 4444 1 0 5555555555555555555555555555555555555555555555555555555555 3 444 6 5 4 2222222222222222222222222222222222222222 0 4 1 000000 55 3 3 00000000 1111111 4444 1 2 0 0 888888 999 3 6666 1 44 5555 555555555555 888 000000000000 1 0 0 5555555 66
lowQualScore : . .............. . . ..... .... ....... ............... ... . . . .. . . .... . . .. ........ . . . ....... . ......... . .. . ......... . . . ...... .. . . . .... ......... . . . . ..... ... . . ..... . . . ............ . ......... ........... .. . ... ... .. ..... .. . .... . . .. .. . ..... . . . . ...... . . .... . ... . . .. . . . ...................... ... .... .. . . . ...... ..... . .... . . .......................................................... . ... . . . ........................................ . . . ...... .. . . ........ ....... .... . . . . ...... ... . .... . .. .... ............ ... ............ . . . ....... ..
lowQualScore : 3 00000000000000 0 7 77777 7777 0000000 333333333333333 777 3 0 3 33 7 0 2222 0 2 22 88888888 5 4 0 4444444 2 666666666 6 66 8 888888888 4 4 8 222222 22 0 6 0 2222 333333333 0 0 3 3 33333 333 7 0 77777 0 2 2 888888888888 8 444444444 77777777777 55 0 000 555 00 33333 00 2 2222 8 0 00 99 7 66666 7 7 4 4 444444 6 7 3333 7 777 5 7 66 8 0 8 2222222222222222222222 666 0000 00 0 7 7 777777 55555 0 5555 0 0 8888888888888888888888888888888888888888888888888888888888 8 000 7 7 0 1111111111111111111111111111111111111111 8 0 8 555555 00 6 6 22222222 3333333 9999 4 3 2 9 888888 666 1 5555 8 22 3333 888888888888 555 222222222222 8 9 7 5555555 11
consensus : TACATAATC-AATC---ATT-C--C--CATAGTTCGTCCCGAA----CGTATACCA-TATACTTCCCAAGATA------CGCAGAAAT-AATTCAGAAAA-TGCCT---TT-ANTTT-TAN-TCGAAATTTANCTG----GGTCCCGGC-CCTG-T------ACCACTANACAGAATGTTAGTGCATTGCAANAA-TCG-T-TACATAC---TGT--AATGTTCAACATTAGATANAATTTTG-------AAGTTGAATTTCTTACCCCAATTCATAAACTGAAGTCCGTAATACATGTAGCTCCAAGTGACTGNA-AATTTTAAAACCGTCNGCGCTTCCA----CTCAC---------GNCCGNCGCCTCTAATTACCCC-AA--A-GATATGAGG---ACCCGTAACNA--T--TGAGACTCAAATATTAATTTTGAT--ATACTAA--ATTCANTATAGTACAT-----AA-ATTATGCTAATAACGGATCTTTATAAAGGATACACAGAACTCTTATT-TGTCTATTTTCACCCAAACCACATTAACACT---AGGTGTTTGATAATTTATGATAG----TGANGTCGATTT--GGT-TAATTAGA-GGCACCGGTCGAAATGGCTGTGANAAGT-GAAAGCGCAGACGGTTTTACAATTTTC-AGTCACTTGGAGCTATTACGGACTTCAATTTAT-GAATTNGGGTAA-GAAAT--TCA--T--------CTA--TAACGTTGCACGTTCTAT-TGTAA--TNGCTTGTTGC-AA-TG-----CACAAACATTCTGTGCATAGTAGTACA-AGTNCCA-GG-CN-----C----------------------GAGTAAAA-GGC--AT-----T-----TTTCTGAATT---CATTT-CTGCAT-ATCTTGGGAAGTATACGGAATTT-CGGGATGAA--CT-------T--GTAGG-TAGT-A-TG--T--A----GAT-TATGTGTGAA------TATA--TTAGAAT-ACAGAGTAGAAT-TTTA-----ATATCATTTGGTTT-A-T-GTTT-GT-TTTTTCGTCGGCGAACTTGGGTACCCTAT------ATTT---A-G----AGTTC--T--A-TAC------------CTT---TACTC-T---T-TA---ATAGTAAATTCGAACCCAAGCGATA----T--AAT--TGCCTGTG
Reference ( family-947 ) : TACATAATC-AATC---ATTCC--C--CATAGTTCGTCCCGAA----CGTATACCA-TATACTTCCCAAGATA------CGCAGAAAT-AATTCAGAAAA-TGCCT---TT-ANTTT-TAN-TCGAAATTTANCTG----GGTCCCGGC-CCTG-T------ACCACTANACAGAATGTTAGTGCATTGCAANAA-TCG-T-TACATAC---TGT--AATGTTCAACATTAGATANAATTTTG-------AAGTTGAATTTCTTACCCCAATTCATAAACTGAAGTCCGTAATACATGTAGCTCCAAGTGACTGNA-AATTTTAAAACCGTCNGCGCTTCCA----CTCAC---------GNCCGNCGCCTCTAATTACCCC-AA--A-GATATGAGG---ACCCGTAACNA--T--TGAGACTCAAATATTAATTTTGAT--ATACTAA--ATTCANTATAGTACAT-----AA-ATTATGCTAATAACGGATCTTTATAAAGGATACACAGAACTCTTATT-TGTCTATTTTCACCCAAACCACATTAACACT---AGGTGTTTGATAATTTATGATAG----TGANGTCGATTT--GGT-TAATTAGA-GGCACCGGTCGAAATGGCTGTGANAAGT-GAAAGCGCAGACGGTTTTACAATTTTC-AGTCACTTGGAGCTATTACGGACTTCAATTTAT-GAATTNGGGTAA-GAAAT--TCA--T--------CTA--TAACGTTGCACGTTCTAT-TGTAA--TNGCTTGTTGC-AA-TG-----CACAAACATTCTGTGCATAGTAGTACA-AGTNCCA-GG-CN-----C----------------------GAGTAAAA-GGC--AT-----T-----TTTCTGAATT---CATTT-CTGCAT-ATCTTGGGAAGTATACGGAATTT-CGGGATGAA--CT-------T--GTAGG-TAGT-A-TG--T--A----GAT-TATGTGTGAA------TATA--TTAGAAT-ACAGAGTAGAAT-TTTA-----ATATCATTTGGTTT-A-T-GTTT-GT-TTTTTCGTCGGCGAACTTGGGTACCCTAT------ATTT---A-G----AGTTC--T--A-TAC------------CTT---TACTC-T---T-TA---ATAGTAAATTCGAACCCAAGCGATA----T--AAT--TGCCTGTG
gi|1 : TACATAATCTAAT----ATTAC--TTTCATAATTTACCCAGAAATTTCGTATACTAGTATACTTCCCACGATAAGTGTATGCAGAGATCAATTCAGAAAAATACCTA--TT-AGTTT-TAC-TTGAAATTTACTTG----GACCCTAGC-ACTG-T------ACTACTA-ACAGAATCTTTGTGAATTGTAAAAA-TAG-T-TGTATA-----G---AATCTGCAACATTAGATATATATTTA-------AAATTAAACTTCTTACCCTATTTTATAAATTGAAGTCCATA------GTAGCTCCAAGTGACTGTATAGTTGCAAAACTGTCTGCGCTATCA----CTCAC---------GCCCGCCGTCTTT--TTACCCC-AACAG-GACAGAAGG---ACCCAAAACGA--TATTGAGATTCAAATATTAATTATAGTGAATATTAACAACTTAATATTGTACAC-----AG-ACGATG----------ATCTTAATAAA---TGCGCAGAACTCTTATTATGTCTGTTTCAACCCAAACCACCTCAACAC----AGAAACTTGACA--TT-TGATAA----TGAAGTCAATTT--GGG-TAATTATT-GGCAATGGTCAAGACGGTTGTGACACGT-GAAAATACAGATGGTTGTACAATTTCC-AGTCACTTGGAGCTATTACGGACTTCAATCTAT-GAATTGGGGTAA-GAAAT----A--T--------CTA--TAACGTTGCATGTTCTATGTGTAA--TTGCTTGTTAC-AACTGATATTCAGTAACATTCTGTGTATAGTAGTATACAGTGCCA-GG-CT-----C----------------------GAGT-----GAC--AT-----T-----TTTCTGAGTT---GATTT-CTATAT-ATCTTGGGAAGTATACGAAATTT-CGGGATGAA--------------GTAAGCTAGT-A-TG--T--A----G----ATGTATGAA------TATA--TTAGAATAACAAAGTAGGAT-TTTATACATGTATCATGTGGTTT-T-G-GTGT-AT-TTTTTTATCGGCGAACTTGGGTACCCTAT------ATTT---A-G----AGTGT--T--T-TAC------------CTT---TACTG-T---T-AA---ATAATAAATTCAAACCCAAGCGATA----T--A----CGCCTGTG
gi|10 : --GAT-CAACCAGATGACACCAGTCAAAATGGTT-CAAGAAGT-GAAAGTGCAGACGGTTTTGCAAT-------------GGAGCTATTGAGGATTTCAGTTCAT-GAATTGGGGTAA-GAGGT--TCAACTTATAAATGCTACTTAATGTTACGAATTCTA--TGTAA--TAGCTTGTTGC-AA-TA-----CAC
gi|11 : GATAA----TGACGTTAATTT--GGT-TGGTTAGT-TGTACCGGCTGAAAT---------AAGT-GAAGTC-CAGACGGTCTTACAATTGTT-TGTCATTTGGAGCTATTAAGGACTTCAATTTATAGAAT---GATAATGA------CA-----------CT---TAATGCCGC-CTTTCTAT-T-CAA--TAGTTTGCAGC-AG-TG-----CACAAAAATttttttatt
gi|12 : AATTTATGGCATGAAATCT-------------GG-TAGT-AGTG--T-------GATGTATATCCGGG------TGTA--TT-GTAT-AT----CAGAAT-TTTA-----AAATCATTTGGTTT-A-T-------------TAACCAGCGAACGTCTGTACCCTGT------ATT---------------------------------------TT---TACTC-C---T-TAATTATAGCAATTTCGAAACCAAGCGATA----TAGAAT--TGCTTGTG
gi|13 : ataaACTATACAGAATGTTAGTGCATTACAAGAA---A-T-TGCATACA--TGTCAAATGTTCAACATTAGATAGAATTTTG-------AAGTTGAATTTCTCACTCCAATTCATAAACTGAAGTCTGTAATACATGTAGCTCCAAGTGGCTAAA-AATTTTAAAACCGTCAACACTTCCA----CT
gi|14 : ACAAAACAGGGTGTTAGTGCATTGCAACAA-GCAAT-TACATACGTGTAT--AATGTTCAACATTAGATATAATTTTGAATTTCTAAGTTGAATTGCATACCCCAATTCATTAGGTGAAGT--G----------------AAGTGATTGGA-AATTTTAAAAC
gi|15 : ctagtacaaaTGTGTA------TATA--TCAGAAT-ACTGAGTACAAT-TTT---------TTGTTCGGTTA-A-T-AGTG-GG-TTTTTTATCGGCGAAT----ATACCCT-T-------TCT---ATG----AG-TC--T--GTTAC------------CTTCAATATGCAT---G-TA---A-AATAATTTCGAATCCAAGAGACA------------TGCCTGTG
gi|16 : tgtTTT--GGCGTAATTAGA-GGTGACTCTCAAAATGTCTGTTA-AAGT-GAAAGCGg
gi|16 : GTCACCTCTAATTACGCC-AA--A--ATTTGAAGTTTACCCGTAACTA--T--TGAGG-TCAAATATTCATTTAGAT-----C--A--ATTCACTATAGTACATGTACAAACATTATGCTAATAACatttgaagtttacccgtaactattgaggtcaaatattcatttagatcaattcactatagtacatgtacaaacattatgctaataactttt
gi|17 : cgctttcactttaacagacattttgagaTTGAT--ATACAAA--ATTGA-TATAGAATAT-----AA-ATTGTGCTATTAATGGGCCCTTGTAAA-GATATACACAAATTTTA-T-TATCTATTTGCACCCCTATTATATTAACA-T---AGGTGTTTGATGATTTATtttt
gi|18 : aaaaaTGAGAAGTATACGGAATTT-CGGGATGAA--CTTTGGTCAT--GTTGG-TGGTGA-TG--T--A----GAT---TGCTTGAATTAATGTATA--TCAGAAT-ACAGAATAGAAC-TTTA-----A-ATCATTTGGTTT-ATT-GTTT-GT-TTGTT
gi|19 : tcACGGAATTT-TGTGTTGAA--CT-------T--TT--G-CAGT-AATG--T--A----AAT-TGTTGGTGAA------TATATATTTGAAC-ACAGAGCAGAAT-TT-------AT-TCATT--GTTT-A-T-t
gi|2 : gcagattttgtgtgaAAA-ATTAATTTTGATTGATACTGA---TTCAATGTAGTACAT-----AA-ATTATGCTAATAACAGATCTTTA-AAAAGATACACAG--CTCTTAT---GTCTATTTTCATCCAAACCACATTAGCACTTGTAGGTGTTTGATAATTTATGATAG----T-AAGTCCATTT--GGT-TAAT----------CAGTCAAAATGGACATGATGTGT-GAAAGTGTGGACAGCTTTACAATTTTT-AGTCACTTGGAGCTATTACGGACTTTAATTTAT-AAATTCATCT-T-GAAATGATAA--T--------TTA---AGCATTA-ACATTCTAT-AATACCTTTGCTTGTTGCAAA-TG------ACAAACATTTTAT-CAAAGGAGTA-G-AGTACCAGGG-CA-----C----------------------AGGTAAAA-TTCAAATAAAAATAATAGTCTATGA------CATTT-TTGCAT-ACCTTTGGAGGTATACAGAATGC-TGTGATTAA--GT-----------TAAA-TAGTAA-TG--T--AGATTGAT-TATGCATGAA------AATA--TTAAAAA-ACAGAGTAGAAT-TCTA-----A-AACAGTTAGTCT------TTTAAA-TTTTTCGTCGGCGAACTTGGGCACCCTAT------ATTT---A-G----AGATG--T--A-TTC------------CTT---TACTC-T---T-TA---ATGGTAAATTCCAACCTA---GATG----T--AAT--TGCCTGTGtgattgggg
gi|20 : ATTT--GGT-AAAT-AAA-GGAACCGGTCGAAA------TGACAAGT-GAA-----------TTTT-CATTTTTCAAGTCGCCCTGATCTATGAAAGACTTCATTTTAT-GAA
gi|21 : -TTTTTCATCGGCAAACTTGAGTGCCCTGT------CTTT---A-G----AGTTC--T--A-CAC------------CTT---TACTC-T---T-T----ACAGTAAATTCGAACCCATGCGATA----A--AAT--TGCCAGTaagaaggaat
gi|22 : ACTTAGGTACTCTATTTTAGTATTTTT-A-G----AATTC--T--A-TAC------------ATT---TATTC-T---A-TA---ATAGTTAATTCAAGCCCAAGTGATA----T--AAT--TGCATGT
gi|23 : ttT-TTTCTCATCGGTCAACTTGGCTACCCTAT------ATTT---A-G----AGTTC--T--A-TAC------------CTT---TACTC-T---T-CA---A
gi|24 : atagacagttataaatatcgcaagaagttTTTTGTCGGCGAACTTCAGAACCCTAT------ATCT---A-A----AGTTC--A--A-TACATCTACATTGTACTTG--TACTT-T---T-TA---ATAGTGAACTCAAA
gi|3 : AACTTATTATGGGTTCTCATATCG-TTTAGGGG-TAATTAGA-GGCACCAGTCAAAATGGCTGTGAAAAGTTGAAAACGCAGACGGATTTACAATTTGC-ATTTATTTGGAACTGTTACGGACTTCTATTTAT-AAATTTGGGTAA-GAAATA-TTA--T--------T----TAATGTTGCACATTCTAT---TAA--TGAGTTGTTAC-AA-TG-----CACAAACATTCTA-GC-TAGTGATACA-AATCCCA-GGACC-----CATGCAGATAAATTTCCAATAGAGAGCAAAA-GGC--AG-----T-----TTTCTGAATT---CATTT-TTGCGT-ATCTTGAAAAGTATATATACGTT-CGGGATG-------------T--ATAGA-T--T---------------GAT-TATGTACGAG------TTTA--ATAGAAT-ACAGAGCGGGAT-TTT------ATATCATTTGGTTG-A-----TT-GT-TTTTTCGTCAGCAAACTTGGGCATCCTAT------TTTTTTGA-GTTCTAGTTC--T--A-TAG------------TTT---TACTC-----T-AA---ATGATAAATTCAAACCCAAGCGATATACGT--AAT--TGCCTG
gi|3 : TACATAATC-AATC-------------TATA---CATCCCGAA----CGTATA----TATACTTTTCAAGATA------CGCAAAAATGAATTCAGAAAACTGCCT---TTTGCTCTCTAT-TGGAAATTTATCTGCATGGGTCCTGGGATTTG-T------ATCACTAGCTAGAATGTTTGTGCATTGTAACAACTCA-T-TA-ATA-----G---AATGTGCAACATTAAAT--AAT------------------ATTTCTTACCCAAATTTATAAATAGAAGTCCGTAA------CAGTTCCAAATAAATGCA-AATTGTAAATCCGTCTGCGTTTTCAACTTTTCACAGCCATTTTGACTGGTGCCTCTAATTACCCCTAA--ACGATATGAGA---ACCCATAATAAGTT--TAATACTCAAATATCAATTTT--T--A---TAA--ATTCATTATAGTGCA-----------TATG-----------TCTTTAT-AAGGATACAC--AACTTTTGTTCTGTATATTATTATCTAATCCAtaatactcaaatatcaatttttataaattcattatagtgcatatgtctttataaggatacacaacttttgttctgtatattattatctaatcca
gi|4 : caggcaattacgtatatcgcttgggtttgaatttatcatttagagtaaaactatagaactagaactcaaaaaaataggatgcccaagtttgctgacgaaaaaacaatcaaccaaatgatataaaatcccgctctgtattctattaaactcgTTTCG-CTGTGAACTTGGGTAACC--T------ATTA---A-G----AGTTTTAT--A-TAC------------CTT---TACTCTT---T-TATT-ATAGTTAATCAAAATCTACGAAATA----T--AATAATGTCTGTG
gi|5 : ttttaaaTACACAATC-TATTTATATTCCTAC--CAAAGTTCGTCCCGA-------TATTCCA-TATACCTCCCAAAATA------TGCAGAA---------------TGCCTCGATT-ATTTT-TAGGTCGACCTTTAGCTG----GG-CTCAGC-CCTAAT------ACCACTCAACAAAATGTttctgaatgaatcaattaaagtcaattatgtaatttttacacacagtctgcagtctccagttcagatgaccagagttctcaaattctactctgtttatttttattttcaaaagttttcttttgcaaaaagtttcagattaaaaaacacctccctctcagtctctaattcattgcctataaaacatgaaaaatccctctccccatcatcagtttttga
gi|5 : ttgcaaaaacgacaggtctTT-CTGCAT-ATTTTGGGAGGTATATGGAATAT-CGGGACGAA--CT-------TTGGTAGG--AAT-A-TAAAT--A----GAT-TGTGTATGAA------TATA--TTAGAAT-ACAGAGTAGAAC-TTTA-----A-ATCATTTGACTT-ATT-GTTT-AT-TGTT------------TTGGGCACGCTAT------ATTT---A-A----AGTTT--T--T-TAC------------CTT---GACTC-T---A-TG---ACAGTAATTTtgaatatattagaatacagagtagaactttaaatcatttgacttattgtttattgttttgggcacgctatatttaaagttttttaccttgactctatgacagtaatttaacgtaa
gi|6 : ttgcaaaaacgacaggtctacattttgttgagtggtattagggctgagcccagctaaaggtcgacctaaaaataatcgaggca-----C----------------------GAGTA-----GC--AT-----C-----TCCATATATTAAGCATTTTCTTCATTATCTTGGGAAGTATACGGAATTT-CAGGACGA---CT-------TTGGTAGG--AAT-G-TG--G--ATT--GAT-TGTGTATAAA------TATA--TTGGGAT-ACAGAGTGGAAT-TTTA-----A-ATCATTTGGTTT-A-----TT-GT-TTTTTCATTGGC---------------AT------ACTT---C-G----AGCCC--T--A-TAC------------CTT---TACTC-TAGCTATA---ATAGTAAGTTCTGACCCAAGCGATA----C--AAT--TACCTGTGaacgtaa
gi|7 : TGT-AA-TG-----TATAAACATTTTG-GTACACT-GC-CA-AGATCCA-GG-TGAAATTC----------------------GAGCAAAAAGGC--AT-----T-----TTTCTGAATT---CATAT-CTGCAT-ACCTTGGGAAGTATACGGAATTT-CGGGATGAA--CTTACA---T--GTAGG-TGGTAA-TG--TCGATT--GAT-TATGTGTGAA------TATA--TCAGAAT-ACAGAGTAGAAT-TTT------ATATCTCTTCGTTTAA-T-GTTT-TT-T
gi|8 : T-ATCTTACGAAGTATACGCAAGTT-CGGGATGA----C-------T--ATCGA-T----------T--G----G-T-TATGCGTGAA------TATG--TTAGAAT-GCAGAGTAGAATATTT-------TACCATTTGGTAC-A-TTGTTT-GTTTTTTTTATTGGCAAACTTGTGTATTCTTT------ATTC---A-G----AGACC--TAGA-TAC------------CTT---AACTA-C---T-TA---ATTGTAAATCCGAGCCCAAGTAATA----C--Atagcatgtgcatcattagata
gi|9 : G----GGTCCGGGC-CTTA-TGTTTACACTACTATACAGAATGTTAGTGCATTACAAGAAATTG-CATACATAG---TCA--AATGTTCAACATTAGAAGGAATTT-G-------AGGTTGAATTTCTCACTCCAATTCATAAACTGAAGTCTGTAATACATGTAGCTCCAAGTGGCT-AA-AATTTTAAAACCGTCAACACTTCCA----CTAAC---------gct
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|25 ): ATACTCATTATTGCGAGGTCAAGGTCTATAGCTCCCATGTCACTTCATTTTTCATGGGTATTTCTTCATATC
Alignments
lowQualScore : 777777777777777777 1 33333 2222 3333333 444444444444444 333 1 1 11 2222 11 22222222 3333333 666666666 2222222 333333 2222 555555555 1 33333 222 22222 1 333333333333 222222222 33333333333 1 222 33333 2222 111111 6666666666666666666666 1111 11 111111 22222 1111 1 9999999999999999999999999999999999999999999999999999999999 111 7777777777777777777777777777777777777777 111111 33333333 2222222 111111111111 111111111111 1111111
lowQualScore : 888888888888888888 2 0 55555 2222 9999999 777777777777777 666 3 1 3 44 3 1 1111 7 4 00 99999999 7 1 1 4444444 3 222222222 0 8 0 5 6666666 1 1 0 777777 44 8 0 1 1111 333333333 1 1 7 3 44444 333 0 1 77777 2 3 3 444444444444 8 666666666 11111111111 66 9 999 666 11 77777 44 3 1111 8 1 55 77 5 88888 1 0 0 1 333333 8 5 5555 1 777 2 6 44 0 8 3 9999999999999999999999 666 8888 11 1 6 6 777777 00000 7 4444 1 0 5555555555555555555555555555555555555555555555555555555555 3 444 6 5 4 2222222222222222222222222222222222222222 0 4 1 000000 55 3 3 00000000 1111111 4444 1 2 0 0 888888 999 3 6666 1 44 5555 555555555555 888 000000000000 1 0 0 5555555 66
lowQualScore : .................. . . ..... .... ....... ............... ... . . . .. . . .... . . .. ........ . . . ....... . ......... . . . . ....... . . . ...... .. . . . .... ......... . . . . ..... ... . . ..... . . . ............ . ......... ........... .. . ... ... .. ..... .. . .... . . .. .. . ..... . . . . ...... . . .... . ... . . .. . . . ...................... ... .... .. . . . ...... ..... . .... . . .......................................................... . ... . . . ........................................ . . . ...... .. . . ........ ....... .... . . . . ...... ... . .... . .. .... ............ ... ............ . . . ....... ..
lowQualScore : 333333333333333333 0 7 77777 7777 0000000 333333333333333 777 3 0 3 33 7 0 2222 0 2 22 88888888 5 4 0 4444444 2 666666666 6 8 8 6 0000000 4 4 8 222222 22 0 6 0 2222 333333333 0 0 3 3 33333 333 7 0 77777 0 2 2 888888888888 8 444444444 77777777777 55 0 000 555 00 33333 00 2 2222 8 0 00 99 7 66666 7 7 4 4 444444 6 7 3333 7 777 5 7 66 8 0 8 4444444444444444444444 666 2222 00 0 7 7 777777 55555 0 5555 0 0 8888888888888888888888888888888888888888888888888888888888 8 000 7 7 0 1111111111111111111111111111111111111111 8 0 8 555555 00 6 6 22222222 3333333 9999 4 3 2 9 888888 666 1 5555 8 22 3333 888888888888 555 222222222222 8 9 7 5555555 11
consensus : TACATAATC--A-ATT---ACTCC---CATAGTTCGTCCCGAA----CGTATACCA-TATACTTCCCAAGATA------CGCAGAAAT-AATTCAGAAAA-TGCCT---TT-ANTTT-TAN-TCGAAATTTANCTG----GGTCCCGGC-CCTG-T------ACCACTANACAGAATGTTAGTGCATTGCAANAA-TCG-T-TACATAC---TGT--AATGTTCAACATTAGATANAATTTTGAA-------GTTGAATTTCTTACCCCAATTCATAAACTGAAGTCCGTAATACATGTAGCTCCAAGTGACTGNA-AATTTTAAAACCGTCNGCGCTTCCA----CTCAC---------GNCCGNCGCCTCTAATTACCCC-AA--A-GATATGAGG---ACCCGTAACNA--T--TGAGACTCAAATATTAATTTTGAT--ATACTAA--ATTCANTATAGTACAT-----AA-ATTATGCTAATAACGGATCTTTATAAAGGATACACAGAACTCTTATT-TGTCTATTTTCACCCAAACCACATTAACACT---AGGTGTTTGATAATTTATGATAG----TGANGTCGATTT--GGT-TAATTAGA-GGCACCGGTCGAAATGGCTGTGANAAGT-GAAAGCGCAGACGGTTTTACAATTTTC-AGTCACTTGGAGCTATTACGGACTTCAATTTAT-GAATTNGGGTAA-GAAAT--TCA--T--------CTA--TAACGTTGCACGTTCTAT-TGTAA--TNGCTTGTTGC-AA-TG-----CACAAACATTCTGTGCATAGTAGTACA-AGTNCCA-GG-CN-----C----------------------GAGTAAAA-GGC--AT-----T-----TTTCTGAATT---CATTT-CTGCAT-ATCTTGGGAAGTATACGGAATTT-CGGGATGAA--CT-------T--GTAGG-TAGT-A-TG--T--A----GAT-TATGTGTGAA------TATA--TTAGAAT-ACAGAGTAGAAT-TTTA-----ATATCATTTGGTTT-A-T-GTTT-GT-TTTTTCGTCGGCGAACTTGGGTACCCTAT------ATTT---A-G----AGTTC--T--A-TAC------------CTT---TACTC-T---T-TA---ATAGTAAATTCGAACCCAAGCGATA----T--AAT--TGCCTGTG
Reference ( family-947 ) : TACATAATC--A-ATC---ATTCC---CATAGTTCGTCCCGAA----CGTATACCA-TATACTTCCCAAGATA------CGCAGAAAT-AATTCAGAAAA-TGCCT---TT-ANTTT-TAN-TCGAAATTTANCTG----GGTCCCGGC-CCTG-T------ACCACTANACAGAATGTTAGTGCATTGCAANAA-TCG-T-TACATAC---TGT--AATGTTCAACATTAGATANAATTTTGAA-------GTTGAATTTCTTACCCCAATTCATAAACTGAAGTCCGTAATACATGTAGCTCCAAGTGACTGNA-AATTTTAAAACCGTCNGCGCTTCCA----CTCAC---------GNCCGNCGCCTCTAATTACCCC-AA--A-GATATGAGG---ACCCGTAACNA--T--TGAGACTCAAATATTAATTTTGAT--ATACTAA--ATTCANTATAGTACAT-----AA-ATTATGCTAATAACGGATCTTTATAAAGGATACACAGAACTCTTATT-TGTCTATTTTCACCCAAACCACATTAACACT---AGGTGTTTGATAATTTATGATAG----TGANGTCGATTT--GGT-TAATTAGA-GGCACCGGTCGAAATGGCTGTGANAAGT-GAAAGCGCAGACGGTTTTACAATTTTC-AGTCACTTGGAGCTATTACGGACTTCAATTTAT-GAATTNGGGTAA-GAAAT--TCA--T--------CTA--TAACGTTGCACGTTCTAT-TGTAA--TNGCTTGTTGC-AA-TG-----CACAAACATTCTGTGCATAGTAGTACA-AGTNCCA-GG-CN-----C----------------------GAGTAAAA-GGC--AT-----T-----TTTCTGAATT---CATTT-CTGCAT-ATCTTGGGAAGTATACGGAATTT-CGGGATGAA--CT-------T--GTAGG-TAGT-A-TG--T--A----GAT-TATGTGTGAA------TATA--TTAGAAT-ACAGAGTAGAAT-TTTA-----ATATCATTTGGTTT-A-T-GTTT-GT-TTTTTCGTCGGCGAACTTGGGTACCCTAT------ATTT---A-G----AGTTC--T--A-TAC------------CTT---TACTC-T---T-TA---ATAGTAAATTCGAACCCAAGCGATA----T--AAT--TGCCTGTG
gi|1 : TACATAATCTAATATT---ACTTT---CATAATTTACCCAGAAATTTCGTATACTAGTATACTTCCCACGATAAGTGTATGCAGAGATCAATTCAGAAAAATACCTA--TT-AGTTT-TAC-TTGAAATTTACTTG----GACCCTAGC-ACTG-T------ACTACTA-ACAGAATCTTTGTGAATTGTAAAAA-TAG-T-TGTATA-----G---AATCTGCAACATTAGATATATATTTAAA-------ATTAAACTTCTTACCCTATTTTATAAATTGAAGTCCATA------GTAGCTCCAAGTGACTGTATAGTTGCAAAACTGTCTGCGCTATCA----CTCAC---------GCCCGCCGTCTTT--TTACCCC-AACAG-GACAGAAGG---ACCCAAAACGA--TATTGAGATTCAAATATTAATTATAGTGAATATTAACAACTTAATATTGTACAC-----AG-ACGATG----------ATCTTAATAAA---TGCGCAGAACTCTTATTATGTCTGTTTCAACCCAAACCACCTCAACAC----AGAAACTTGACA--TT-TGATAA----TGAAGTCAATTT--GGG-TAATTATT-GGCAATGGTCAAGACGGTTGTGACACGT-GAAAATACAGATGGTTGTACAATTTCC-AGTCACTTGGAGCTATTACGGACTTCAATCTAT-GAATTGGGGTAA-GAAAT----A--T--------CTA--TAACGTTGCATGTTCTATGTGTAA--TTGCTTGTTAC-AACTGATATTCAGTAACATTCTGTGTATAGTAGTATACAGTGCCA-GG-CT-----C----------------------GAGT-----GAC--AT-----T-----TTTCTGAGTT---GATTT-CTATAT-ATCTTGGGAAGTATACGAAATTT-CGGGATGAA--------------GTAAGCTAGT-A-TG--T--A----G----ATGTATGAA------TATA--TTAGAATAACAAAGTAGGAT-TTTATACATGTATCATGTGGTTT-T-G-GTGT-AT-TTTTTTATCGGCGAACTTGGGTACCCTAT------ATTT---A-G----AGTGT--T--T-TAC------------CTT---TACTG-T---T-AA---ATAATAAATTCAAACCCAAGCGATA----T--A----CGCCTGTG
gi|10 : --GAT-CAACCAGATGACACCAGTCAAAATGGTT-CAAGAAGT-GAAAGTGCAGACGGTTTTGCAAT-------------GGAGCTATTGAGGATTTCAGTTCAT-GAATTGGGGTAA-GAGGT--TCAACTTATAAATGCTACTTAATGTTACGAATTCTA--TGTAA--TAGCTTGTTGC-AA-TA-----CAC
gi|11 : GATAA----TGACGTTAATTT--GGT-TGGTTAGT-TGTACCGGCTGAAAT---------AAGT-GAAGTC-CAGACGGTCTTACAATTGTT-TGTCATTTGGAGCTATTAAGGACTTCAATTTATAGAAT---GATAATGA------CA-----------CT---TAATGCCGC-CTTTCTAT-T-CAA--TAGTTTGCAGC-AG-TG-----CACAAAAATttttttatt
gi|12 : AATTTATGGCATGAAATCT-------------GG-TAGT-AGTG--T-------GATGTATATCCGGG------TGTA--TT-GTAT-AT----CAGAAT-TTTA-----AAATCATTTGGTTT-A-T-------------TAACCAGCGAACGTCTGTACCCTGT------ATT---------------------------------------TT---TACTC-C---T-TAATTATAGCAATTTCGAAACCAAGCGATA----TAGAAT--TGCTTGTG
gi|13 : ataaACTATACAGAATGTTAGTGCATTACAAGAA---A-T-TGCATACA--TGTCAAATGTTCAACATTAGATAGAATTTTGAA-------GTTGAATTTCTCACTCCAATTCATAAACTGAAGTCTGTAATACATGTAGCTCCAAGTGGCTAAA-AATTTTAAAACCGTCAACACTTCCA----CT
gi|14 : ACAAAACAGGGTGTTAGTGCATTGCAACAA-GCAAT-TACATACGTGTAT--AATGTTCAACATTAGATATAATTTTGAATTTCTAAGTTGAATTGCATACCCCAATTCATTAGGTGAAGT--G----------------AAGTGATTGGA-AATTTTAAAAC
gi|15 : ctagtacaaaTGTGTA------TATA--TCAGAAT-ACTGAGTACAAT-TTT---------TTGTTCGGTTA-A-T-AGTG-GG-TTTTTTATCGGCGAAT----ATACCCT-T-------TCT---ATG----AG-TC--T--GTTAC------------CTTCAATATGCAT---G-TA---A-AATAATTTCGAATCCAAGAGACA------------TGCCTGTG
gi|16 : tgtTTT--GGCGTAATTAGA-GGTGACTCTCAAAATGTCTGTTA-AAGT-GAAAGCGg
gi|16 : GTCACCTCTAATTACGCC-AA--A--ATTTGAAGTTTACCCGTAACTA--T--TGAGG-TCAAATATTCATTTAGAT-----C--A--ATTCACTATAGTACATGTACAAACATTATGCTAATAACatttgaagtttacccgtaactattgaggtcaaatattcatttagatcaattcactatagtacatgtacaaacattatgctaataactttt
gi|17 : cgctttcactttaacagacattttgagaTTGAT--ATACAAA--ATTGA-TATAGAATAT-----AA-ATTGTGCTATTAATGGGCCCTTGTAAA-GATATACACAAATTTTA-T-TATCTATTTGCACCCCTATTATATTAACA-T---AGGTGTTTGATGATTTATtttt
gi|18 : aaaaaTGAGAAGTATACGGAATTT-CGGGATGAA--CTTTGGTCAT--GTTGG-TGGTGA-TG--T--A----GAT---TGCTTGAATTAATGTATA--TCAGAAT-ACAGAATAGAAC-TTTA-----A-ATCATTTGGTTT-ATT-GTTT-GT-TTGTT
gi|19 : tcACGGAATTT-TGTGTTGAA--CT-------T--TT--G-CAGT-AATG--T--A----AAT-TGTTGGTGAA------TATATATTTGAAC-ACAGAGCAGAAT-TT-------AT-TCATT--GTTT-A-T-t
gi|2 : gcagattttgtgtgaAAA-ATTAATTTTGATTGATACTGA---TTCAATGTAGTACAT-----AA-ATTATGCTAATAACAGATCTTTA-AAAAGATACACAG--CTCTTAT---GTCTATTTTCATCCAAACCACATTAGCACTTGTAGGTGTTTGATAATTTATGATAG----T-AAGTCCATTT--GGT-TAAT----------CAGTCAAAATGGACATGATGTGT-GAAAGTGTGGACAGCTTTACAATTTTT-AGTCACTTGGAGCTATTACGGACTTTAATTTAT-AAATTCATCT-T-GAAATGATAA--T--------TTA---AGCATTA-ACATTCTAT-AATACCTTTGCTTGTTGCAAA-TG------ACAAACATTTTAT-CAAAGGAGTA-G-AGTACCAGGG-CA-----C----------------------AGGTAAAA-TTCAAATAAAAATAATAGTCTATGA------CATTT-TTGCAT-ACCTTTGGAGGTATACAGAATGC-TGTGATTAA--GT-----------TAAA-TAGTAA-TG--T--AGATTGAT-TATGCATGAA------AATA--TTAAAAA-ACAGAGTAGAAT-TCTA-----A-AACAGTTAGTCT------TTTAAA-TTTTTCGTCGGCGAACTTGGGCACCCTAT------ATTT---A-G----AGATG--T--A-TTC------------CTT---TACTC-T---T-TA---ATGGTAAATTCCAACCTA---GATG----T--AAT--TGCCTGTGtgattgggg
gi|20 : ATTT--GGT-AAAT-AAA-GGAACCGGTCGAAA------TGACAAGT-GAA-----------TTTT-CATTTTTCAAGTCGCCCTGATCTATGAAAGACTTCATTTTAT-GAA
gi|21 : -TTTTTCATCGGCAAACTTGAGTGCCCTGT------CTTT---A-G----AGTTC--T--A-CAC------------CTT---TACTC-T---T-T----ACAGTAAATTCGAACCCATGCGATA----A--AAT--TGCCAGTaagaaggaat
gi|22 : ACTTAGGTACTCTATTTTAGTATTTTT-A-G----AATTC--T--A-TAC------------ATT---TATTC-T---A-TA---ATAGTTAATTCAAGCCCAAGTGATA----T--AAT--TGCATGT
gi|23 : ttT-TTTCTCATCGGTCAACTTGGCTACCCTAT------ATTT---A-G----AGTTC--T--A-TAC------------CTT---TACTC-T---T-CA---A
gi|24 : atagacagttataaatatcgcaagaagttTTTTGTCGGCGAACTTCAGAACCCTAT------ATCT---A-A----AGTTC--A--A-TACATCTACATTGTACTTG--TACTT-T---T-TA---ATAGTGAACTCAAA
gi|3 : AACTTATTATGGGTTCTCATATCG-TTTAGGGG-TAATTAGA-GGCACCAGTCAAAATGGCTGTGAAAAGTTGAAAACGCAGACGGATTTACAATTTGC-ATTTATTTGGAACTGTTACGGACTTCTATTTAT-AAATTTGGGTAA-GAAATA-TTA--T--------TTA----ATGTTGCACATTCTAT-T--AA--TGAGTTGTTAC-AA-TG-----CACAAACATTCTA-GC-TAGTGATACA-AATCCCA-GGACC-----CATGCAGATAAATTTCCAATAGAGAGCAAAA-GGC--AG-----T-----TTTCTGAATT---CATTT-TTGCGT-ATCTTGAAAAGTATATATACGTT-CGGGATG-------------T--ATAGA-T--T---------------GAT-TATGTACGAG------TTTA--ATAGAAT-ACAGAGCGGGAT-TTT------ATATCATTTGGTTG-A-----TT-GT-TTTTTCGTCAGCAAACTTGGGCATCCTAT------TTTTTTGA-GTTCTAGTTC--T--A-TAG------------TTT---TACTC-----T-AA---ATGATAAATTCAAACCCAAGCGATATACGT--AAT--TGCCTG
gi|3 : TACATAATC--A-ATC-----------TATA---CATCCCGAA----CGTATA----TATACTTTTCAAGATA------CGCAAAAATGAATTCAGAAAACTGCCT---TTTGCTCTCTAT-TGGAAATTTATCTGCATGGGTCCTGGGATTTG-T------ATCACTAGCTAGAATGTTTGTGCATTGTAACAACTCA-T-TA-ATA-----G---AATGTGCAACATTAAATA--AT------------------ATTTCTTACCCAAATTTATAAATAGAAGTCCGTAA------CAGTTCCAAATAAATGCA-AATTGTAAATCCGTCTGCGTTTTCAACTTTTCACAGCCATTTTGACTGGTGCCTCTAATTACCCCTAA--ACGATATGAGA---ACCCATAATAAGTT--TAATACTCAAATATCAATTTT--T--A---TAA--ATTCATTATAGTGCA-----------TATG-----------TCTTTAT-AAGGATACAC--AACTTTTGTTCTGTATATTATTATCTAATCCAtaatactcaaatatcaatttttataaattcattatagtgcatatgtctttataaggatacacaacttttgttctgtatattattatctaatcca
gi|4 : caggcaattacgtatatcgcttgggtttgaatttatcatttagagtaaaactatagaactagaactcaaaaaaataggatgcccaagtttgctgacgaaaaaacaatcaaccaaatgatataaaatcccgctctgtattctattaaactcgTTTCG-CTGTGAACTTGGGTAACC--T------ATTA---A-G----AGTTTTAT--A-TAC------------CTT---TACTCTT---T-TATT-ATAGTTAATCAAAATCTACGAAATA----T--AATAATGTCTGTG
gi|5 : ttttaaaTACACAATC--T-ATTTATATTCCTACCAAAGTTCGTCCCGA-------TATTCCA-TATACCTCCCAAAATA------TGCAGAA---------------TGCCTCGATT-ATTTT-TAGGTCGACCTTTAGCTG----GG-CTCAGC-CCTAAT------ACCACTCAACAAAATGTttctgaatgaatcaattaaagtcaattatgtaatttttacacacagtctgcagtctccagttcagatgaccagagttctcaaattctactctgtttatttttattttcaaaagttttcttttgcaaaaagtttcagattaaaaaacacctccctctcagtctctaattcattgcctataaaacatgaaaaatccctctccccatcatcagtttttga
gi|5 : ttgcaaaaacgacaggtctTT-CTGCAT-ATTTTGGGAGGTATATGGAATAT-CGGGACGAA--CT-------TTGGTAGG--AAT-A-TAAAT--A----GAT-TGTGTATGAA------TATA--TTAGAAT-ACAGAGTAGAAC-TTTA-----A-ATCATTTGACTT-ATT-GTTT-AT-TGTT------------TTGGGCACGCTAT------ATTT---A-A----AGTTT--T--T-TAC------------CTT---GACTC-T---A-TG---ACAGTAATTTtgaatatattagaatacagagtagaactttaaatcatttgacttattgtttattgttttgggcacgctatatttaaagttttttaccttgactctatgacagtaatttaacgtaa
gi|6 : ttgcaaaaacgacaggtctacattttgttgagtggtattagggctgagcccagctaaaggtcgacctaaaaataatcgaggca-----C----------------------GAGTA-----GC--AT-----C-----TCCATATATTAAGCATTTTCTTCATTATCTTGGGAAGTATACGGAATTT-CAGGACGA---CT-------TTGGTAGG--AAT-G-TG--G--ATT--GAT-TGTGTATAAA------TATA--TTGGGAT-ACAGAGTGGAAT-TTTA-----A-ATCATTTGGTTT-A-----TT-GT-TTTTTCATTGGC---------------AT------ACTT---C-G----AGCCC--T--A-TAC------------CTT---TACTC-TAGCTATA---ATAGTAAGTTCTGACCCAAGCGATA----C--AAT--TACCTGTGaacgtaa
gi|7 : TGT-AA-TG-----TATAAACATTTTG-GTACACT-GC-CA-AGATCCA-GG-TGAAATTC----------------------GAGCAAAAAGGC--AT-----T-----TTTCTGAATT---CATAT-CTGCAT-ACCTTGGGAAGTATACGGAATTT-CGGGATGAA--CTTACA---T--GTAGG-TGGTAA-TG--TCGATT--GAT-TATGTGTGAA------TATA--TCAGAAT-ACAGAGTAGAAT-TTT------ATATCTCTTCGTTTAA-T-GTTT-TT-T
gi|8 : T-ATCTTACGAAGTATACGCAAGTT-CGGGATGA----C-------T--ATCGA-T----------T--G----G-T-TATGCGTGAA------TATG--TTAGAAT-GCAGAGTAGAATATTT-------TACCATTTGGTAC-A-TTGTTT-GTTTTTTTTATTGGCAAACTTGTGTATTCTTT------ATTC---A-G----AGACC--TAGA-TAC------------CTT---AACTA-C---T-TA---ATTGTAAATCCGAGCCCAAGTAATA----C--Atagcatgtgcatcattagata
gi|9 : G----GGTCCGGGC-CTTA-TGTTTACACTACTATACAGAATGTTAGTGCATTACAAGAAATTG-CATACATAG---TCA--AATGTTCAACATTAGAAGGAATTT-GAG-------GTTGAATTTCTCACTCCAATTCATAAACTGAAGTCTGTAATACATGTAGCTCCAAGTGGCT-AA-AATTTTAAAACCGTCAACACTTCCA----CTAAC---------gct
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|25 ): ATACTCATTATTGCGAGGTCAAGGTCTATAGCTCCCATGTCACTTCATTTTTCATGGGTATTTCTTCATATC
Alignments
lowQualScore : 666666666666666666 1 33333 2222 3333333 444444444444444 333 1 1 11 2222 11 22222222 3333333 666666666 2222222 333333 2222 555555555 1 33333 222 22222 1 333333333333 222222222 33333333333 1 222 33333 2222 111111 6666666666666666666666 1111 11 111111 22222 1111 1 9999999999999999999999999999999999999999999999999999999999 111 7777777777777777777777777777777777777777 111111 33333333 2222222 111111111111 111111111111 1111111
lowQualScore : 888888888888888888 2 0 55555 2222 9999999 777777777777777 666 3 1 3 44 3 1 1111 7 4 00 99999999 7 1 1 4444444 3 222222222 0 8 0 5 6666666 1 1 0 777777 44 8 0 1 1111 333333333 1 1 7 3 44444 333 0 1 77777 2 3 3 444444444444 8 666666666 11111111111 66 9 999 666 11 77777 44 3 1111 8 1 55 77 5 88888 1 0 0 1 333333 8 5 5555 1 777 2 6 44 0 8 3 9999999999999999999999 666 8888 11 1 6 6 777777 00000 7 4444 1 0 5555555555555555555555555555555555555555555555555555555555 3 444 6 5 4 2222222222222222222222222222222222222222 0 4 1 000000 55 3 3 00000000 1111111 4444 1 2 0 0 888888 999 3 6666 1 44 5555 555555555555 888 000000000000 1 0 0 5555555 66
lowQualScore : .................. . . ..... .... ....... ............... ... . . . .. . . .... . . .. ........ . . . ....... . ......... . . . . ....... . . . ...... .. . . . .... ......... . . . . ..... ... . . ..... . . . ............ . ......... ........... .. . ... ... .. ..... .. . .... . . .. .. . ..... . . . . ...... . . .... . ... . . .. . . . ...................... ... .... .. . . . ...... ..... . .... . . .......................................................... . ... . . . ........................................ . . . ...... .. . . ........ ....... .... . . . . ...... ... . .... . .. .... ............ ... ............ . . . ....... ..
lowQualScore : 000000000000000000 0 7 77777 7777 0000000 333333333333333 777 3 0 3 33 7 0 2222 0 2 22 88888888 5 4 0 4444444 2 666666666 6 8 8 6 0000000 4 4 8 222222 22 0 6 0 2222 333333333 0 0 3 3 33333 333 7 0 77777 0 2 2 888888888888 8 444444444 77777777777 55 0 000 555 00 33333 00 2 2222 8 0 00 99 7 66666 7 7 4 4 444444 6 7 3333 7 777 5 7 66 8 0 8 4444444444444444444444 666 2222 00 0 7 7 777777 55555 0 5555 0 0 8888888888888888888888888888888888888888888888888888888888 8 000 7 7 0 1111111111111111111111111111111111111111 8 0 8 555555 00 6 6 22222222 3333333 9999 4 3 2 9 888888 666 1 5555 8 22 3333 888888888888 555 222222222222 8 9 7 5555555 11
consensus : TACATAATC--A-ATT---ACTCC---CATAGTTCGTCCCGAA----CGTATACCA-TATACTTCCCAAGATA------CGCAGAAAT-AATTCAGAAAA-TGCCT---TT-ANTTT-TAN-TCGAAATTTANCTG----GGTCCCGGC-CCTG-T------ACCACTANACAGAATGTTAGTGCATTGCAANAA-TCG-T-TACATAC---TGT--AATGTTCAACATTAGATANAATTTTGAA-------GTTGAATTTCTTACCCCAATTCATAAACTGAAGTCCGTAATACATGTAGCTCCAAGTGACTGNA-AATTTTAAAACCGTCNGCGCTTCCA----CTCAC---------GNCCGNCGCCTCTAATTACCCC-AA--A-GATATGAGG---ACCCGTAACNA--T--TGAGACTCAAATATTAATTTTGAT--ATACTAA--ATTCANTATAGTACAT-----AA-ATTATGCTAATAACGGATCTTTATAAAGGATACACAGAACTCTTATT-TGTCTATTTTCACCCAAACCACATTAACACT---AGGTGTTTGATAATTTATGATAG----TGANGTCGATTT--GGT-TAATTAGA-GGCACCGGTCGAAATGGCTGTGANAAGT-GAAAGCGCAGACGGTTTTACAATTTTC-AGTCACTTGGAGCTATTACGGACTTCAATTTAT-GAATTNGGGTAA-GAAAT--TCA--T--------CTA--TAACGTTGCACGTTCTAT-TGTAA--TNGCTTGTTGC-AA-TG-----CACAAACATTCTGTGCATAGTAGTACA-AGTNCCA-GG-CN-----C----------------------GAGTAAAA-GGC--AT-----T-----TTTCTGAATT---CATTT-CTGCAT-ATCTTGGGAAGTATACGGAATTT-CGGGATGAA--CT-------T--GTAGG-TAGT-A-TG--T--A----GAT-TATGTGTGAA------TATA--TTAGAAT-ACAGAGTAGAAT-TTTA-----ATATCATTTGGTTT-A-T-GTTT-GT-TTTTTCGTCGGCGAACTTGGGTACCCTAT------ATTT---A-G----AGTTC--T--A-TAC------------CTT---TACTC-T---T-TA---ATAGTAAATTCGAACCCAAGCGATA----T--AAT--TGCCTGTG
Reference ( family-947 ) : TACATAATC--A-ATT---ACTCC---CATAGTTCGTCCCGAA----CGTATACCA-TATACTTCCCAAGATA------CGCAGAAAT-AATTCAGAAAA-TGCCT---TT-ANTTT-TAN-TCGAAATTTANCTG----GGTCCCGGC-CCTG-T------ACCACTANACAGAATGTTAGTGCATTGCAANAA-TCG-T-TACATAC---TGT--AATGTTCAACATTAGATANAATTTTGAA-------GTTGAATTTCTTACCCCAATTCATAAACTGAAGTCCGTAATACATGTAGCTCCAAGTGACTGNA-AATTTTAAAACCGTCNGCGCTTCCA----CTCAC---------GNCCGNCGCCTCTAATTACCCC-AA--A-GATATGAGG---ACCCGTAACNA--T--TGAGACTCAAATATTAATTTTGAT--ATACTAA--ATTCANTATAGTACAT-----AA-ATTATGCTAATAACGGATCTTTATAAAGGATACACAGAACTCTTATT-TGTCTATTTTCACCCAAACCACATTAACACT---AGGTGTTTGATAATTTATGATAG----TGANGTCGATTT--GGT-TAATTAGA-GGCACCGGTCGAAATGGCTGTGANAAGT-GAAAGCGCAGACGGTTTTACAATTTTC-AGTCACTTGGAGCTATTACGGACTTCAATTTAT-GAATTNGGGTAA-GAAAT--TCA--T--------CTA--TAACGTTGCACGTTCTAT-TGTAA--TNGCTTGTTGC-AA-TG-----CACAAACATTCTGTGCATAGTAGTACA-AGTNCCA-GG-CN-----C----------------------GAGTAAAA-GGC--AT-----T-----TTTCTGAATT---CATTT-CTGCAT-ATCTTGGGAAGTATACGGAATTT-CGGGATGAA--CT-------T--GTAGG-TAGT-A-TG--T--A----GAT-TATGTGTGAA------TATA--TTAGAAT-ACAGAGTAGAAT-TTTA-----ATATCATTTGGTTT-A-T-GTTT-GT-TTTTTCGTCGGCGAACTTGGGTACCCTAT------ATTT---A-G----AGTTC--T--A-TAC------------CTT---TACTC-T---T-TA---ATAGTAAATTCGAACCCAAGCGATA----T--AAT--TGCCTGTG
gi|1 : TACATAATCTAATATT---ACTTT---CATAATTTACCCAGAAATTTCGTATACTAGTATACTTCCCACGATAAGTGTATGCAGAGATCAATTCAGAAAAATACCTA--TT-AGTTT-TAC-TTGAAATTTACTTG----GACCCTAGC-ACTG-T------ACTACTA-ACAGAATCTTTGTGAATTGTAAAAA-TAG-T-TGTATA-----G---AATCTGCAACATTAGATATATATTTAAA-------ATTAAACTTCTTACCCTATTTTATAAATTGAAGTCCATA------GTAGCTCCAAGTGACTGTATAGTTGCAAAACTGTCTGCGCTATCA----CTCAC---------GCCCGCCGTCTTT--TTACCCC-AACAG-GACAGAAGG---ACCCAAAACGA--TATTGAGATTCAAATATTAATTATAGTGAATATTAACAACTTAATATTGTACAC-----AG-ACGATG----------ATCTTAATAAA---TGCGCAGAACTCTTATTATGTCTGTTTCAACCCAAACCACCTCAACAC----AGAAACTTGACA--TT-TGATAA----TGAAGTCAATTT--GGG-TAATTATT-GGCAATGGTCAAGACGGTTGTGACACGT-GAAAATACAGATGGTTGTACAATTTCC-AGTCACTTGGAGCTATTACGGACTTCAATCTAT-GAATTGGGGTAA-GAAAT----A--T--------CTA--TAACGTTGCATGTTCTATGTGTAA--TTGCTTGTTAC-AACTGATATTCAGTAACATTCTGTGTATAGTAGTATACAGTGCCA-GG-CT-----C----------------------GAGT-----GAC--AT-----T-----TTTCTGAGTT---GATTT-CTATAT-ATCTTGGGAAGTATACGAAATTT-CGGGATGAA--------------GTAAGCTAGT-A-TG--T--A----G----ATGTATGAA------TATA--TTAGAATAACAAAGTAGGAT-TTTATACATGTATCATGTGGTTT-T-G-GTGT-AT-TTTTTTATCGGCGAACTTGGGTACCCTAT------ATTT---A-G----AGTGT--T--T-TAC------------CTT---TACTG-T---T-AA---ATAATAAATTCAAACCCAAGCGATA----T--A----CGCCTGTG
gi|10 : --GAT-CAACCAGATGACACCAGTCAAAATGGTT-CAAGAAGT-GAAAGTGCAGACGGTTTTGCAAT-------------GGAGCTATTGAGGATTTCAGTTCAT-GAATTGGGGTAA-GAGGT--TCAACTTATAAATGCTACTTAATGTTACGAATTCTA--TGTAA--TAGCTTGTTGC-AA-TA-----CAC
gi|11 : GATAA----TGACGTTAATTT--GGT-TGGTTAGT-TGTACCGGCTGAAAT---------AAGT-GAAGTC-CAGACGGTCTTACAATTGTT-TGTCATTTGGAGCTATTAAGGACTTCAATTTATAGAAT---GATAATGA------CA-----------CT---TAATGCCGC-CTTTCTAT-T-CAA--TAGTTTGCAGC-AG-TG-----CACAAAAATttttttatt
gi|12 : AATTTATGGCATGAAATCT-------------GG-TAGT-AGTG--T-------GATGTATATCCGGG------TGTA--TT-GTAT-AT----CAGAAT-TTTA-----AAATCATTTGGTTT-A-T-------------TAACCAGCGAACGTCTGTACCCTGT------ATT---------------------------------------TT---TACTC-C---T-TAATTATAGCAATTTCGAAACCAAGCGATA----TAGAAT--TGCTTGTG
gi|13 : ataaACTATACAGAATGTTAGTGCATTACAAGAA---A-T-TGCATACA--TGTCAAATGTTCAACATTAGATAGAATTTTGAA-------GTTGAATTTCTCACTCCAATTCATAAACTGAAGTCTGTAATACATGTAGCTCCAAGTGGCTAAA-AATTTTAAAACCGTCAACACTTCCA----CT
gi|14 : ACAAAACAGGGTGTTAGTGCATTGCAACAA-GCAAT-TACATACGTGTAT--AATGTTCAACATTAGATATAATTTTGAATTTCTAAGTTGAATTGCATACCCCAATTCATTAGGTGAAGT--G----------------AAGTGATTGGA-AATTTTAAAAC
gi|15 : ctagtacaaaTGTGTA------TATA--TCAGAAT-ACTGAGTACAAT-TTT---------TTGTTCGGTTA-A-T-AGTG-GG-TTTTTTATCGGCGAAT----ATACCCT-T-------TCT---ATG----AG-TC--T--GTTAC------------CTTCAATATGCAT---G-TA---A-AATAATTTCGAATCCAAGAGACA------------TGCCTGTG
gi|16 : tgtTTT--GGCGTAATTAGA-GGTGACTCTCAAAATGTCTGTTA-AAGT-GAAAGCGg
gi|16 : GTCACCTCTAATTACGCC-AA--A--ATTTGAAGTTTACCCGTAACTA--T--TGAGG-TCAAATATTCATTTAGAT-----C--A--ATTCACTATAGTACATGTACAAACATTATGCTAATAACatttgaagtttacccgtaactattgaggtcaaatattcatttagatcaattcactatagtacatgtacaaacattatgctaataactttt
gi|17 : cgctttcactttaacagacattttgagaTTGAT--ATACAAA--ATTGA-TATAGAATAT-----AA-ATTGTGCTATTAATGGGCCCTTGTAAA-GATATACACAAATTTTA-T-TATCTATTTGCACCCCTATTATATTAACA-T---AGGTGTTTGATGATTTATtttt
gi|18 : aaaaaTGAGAAGTATACGGAATTT-CGGGATGAA--CTTTGGTCAT--GTTGG-TGGTGA-TG--T--A----GAT---TGCTTGAATTAATGTATA--TCAGAAT-ACAGAATAGAAC-TTTA-----A-ATCATTTGGTTT-ATT-GTTT-GT-TTGTT
gi|19 : tcACGGAATTT-TGTGTTGAA--CT-------T--TT--G-CAGT-AATG--T--A----AAT-TGTTGGTGAA------TATATATTTGAAC-ACAGAGCAGAAT-TT-------AT-TCATT--GTTT-A-T-t
gi|2 : gcagattttgtgtgaAAA-ATTAATTTTGATTGATACTGA---TTCAATGTAGTACAT-----AA-ATTATGCTAATAACAGATCTTTA-AAAAGATACACAG--CTCTTAT---GTCTATTTTCATCCAAACCACATTAGCACTTGTAGGTGTTTGATAATTTATGATAG----T-AAGTCCATTT--GGT-TAAT----------CAGTCAAAATGGACATGATGTGT-GAAAGTGTGGACAGCTTTACAATTTTT-AGTCACTTGGAGCTATTACGGACTTTAATTTAT-AAATTCATCT-T-GAAATGATAA--T--------TTA---AGCATTA-ACATTCTAT-AATACCTTTGCTTGTTGCAAA-TG------ACAAACATTTTAT-CAAAGGAGTA-G-AGTACCAGGG-CA-----C----------------------AGGTAAAA-TTCAAATAAAAATAATAGTCTATGA------CATTT-TTGCAT-ACCTTTGGAGGTATACAGAATGC-TGTGATTAA--GT-----------TAAA-TAGTAA-TG--T--AGATTGAT-TATGCATGAA------AATA--TTAAAAA-ACAGAGTAGAAT-TCTA-----A-AACAGTTAGTCT------TTTAAA-TTTTTCGTCGGCGAACTTGGGCACCCTAT------ATTT---A-G----AGATG--T--A-TTC------------CTT---TACTC-T---T-TA---ATGGTAAATTCCAACCTA---GATG----T--AAT--TGCCTGTGtgattgggg
gi|20 : ATTT--GGT-AAAT-AAA-GGAACCGGTCGAAA------TGACAAGT-GAA-----------TTTT-CATTTTTCAAGTCGCCCTGATCTATGAAAGACTTCATTTTAT-GAA
gi|21 : -TTTTTCATCGGCAAACTTGAGTGCCCTGT------CTTT---A-G----AGTTC--T--A-CAC------------CTT---TACTC-T---T-T----ACAGTAAATTCGAACCCATGCGATA----A--AAT--TGCCAGTaagaaggaat
gi|22 : ACTTAGGTACTCTATTTTAGTATTTTT-A-G----AATTC--T--A-TAC------------ATT---TATTC-T---A-TA---ATAGTTAATTCAAGCCCAAGTGATA----T--AAT--TGCATGT
gi|23 : ttT-TTTCTCATCGGTCAACTTGGCTACCCTAT------ATTT---A-G----AGTTC--T--A-TAC------------CTT---TACTC-T---T-CA---A
gi|24 : atagacagttataaatatcgcaagaagttTTTTGTCGGCGAACTTCAGAACCCTAT------ATCT---A-A----AGTTC--A--A-TACATCTACATTGTACTTG--TACTT-T---T-TA---ATAGTGAACTCAAA
gi|3 : AACTTATTATGGGTTCTCATATCG-TTTAGGGG-TAATTAGA-GGCACCAGTCAAAATGGCTGTGAAAAGTTGAAAACGCAGACGGATTTACAATTTGC-ATTTATTTGGAACTGTTACGGACTTCTATTTAT-AAATTTGGGTAA-GAAATA-TTA--T--------TTA----ATGTTGCACATTCTAT-T--AA--TGAGTTGTTAC-AA-TG-----CACAAACATTCTA-GC-TAGTGATACA-AATCCCA-GGACC-----CATGCAGATAAATTTCCAATAGAGAGCAAAA-GGC--AG-----T-----TTTCTGAATT---CATTT-TTGCGT-ATCTTGAAAAGTATATATACGTT-CGGGATG-------------T--ATAGA-T--T---------------GAT-TATGTACGAG------TTTA--ATAGAAT-ACAGAGCGGGAT-TTT------ATATCATTTGGTTG-A-----TT-GT-TTTTTCGTCAGCAAACTTGGGCATCCTAT------TTTTTTGA-GTTCTAGTTC--T--A-TAG------------TTT---TACTC-----T-AA---ATGATAAATTCAAACCCAAGCGATATACGT--AAT--TGCCTG
gi|3 : TACATAATC--A-AT--------C---TATA---CATCCCGAA----CGTATA----TATACTTTTCAAGATA------CGCAAAAATGAATTCAGAAAACTGCCT---TTTGCTCTCTAT-TGGAAATTTATCTGCATGGGTCCTGGGATTTG-T------ATCACTAGCTAGAATGTTTGTGCATTGTAACAACTCA-T-TA-ATA-----G---AATGTGCAACATTAAATA--AT------------------ATTTCTTACCCAAATTTATAAATAGAAGTCCGTAA------CAGTTCCAAATAAATGCA-AATTGTAAATCCGTCTGCGTTTTCAACTTTTCACAGCCATTTTGACTGGTGCCTCTAATTACCCCTAA--ACGATATGAGA---ACCCATAATAAGTT--TAATACTCAAATATCAATTTT--T--A---TAA--ATTCATTATAGTGCA-----------TATG-----------TCTTTAT-AAGGATACAC--AACTTTTGTTCTGTATATTATTATCTAATCCAtaatactcaaatatcaatttttataaattcattatagtgcatatgtctttataaggatacacaacttttgttctgtatattattatctaatcca
gi|4 : caggcaattacgtatatcgcttgggtttgaatttatcatttagagtaaaactatagaactagaactcaaaaaaataggatgcccaagtttgctgacgaaaaaacaatcaaccaaatgatataaaatcccgctctgtattctattaaactcgTTTCG-CTGTGAACTTGGGTAACC--T------ATTA---A-G----AGTTTTAT--A-TAC------------CTT---TACTCTT---T-TATT-ATAGTTAATCAAAATCTACGAAATA----T--AATAATGTCTGTG
gi|5 : ttttaaaTACACAATC--T-ATTTATATTCCTACCAAAGTTCGTCCCGA-------TATTCCA-TATACCTCCCAAAATA------TGCAGAA---------------TGCCTCGATT-ATTTT-TAGGTCGACCTTTAGCTG----GG-CTCAGC-CCTAAT------ACCACTCAACAAAATGTttctgaatgaatcaattaaagtcaattatgtaatttttacacacagtctgcagtctccagttcagatgaccagagttctcaaattctactctgtttatttttattttcaaaagttttcttttgcaaaaagtttcagattaaaaaacacctccctctcagtctctaattcattgcctataaaacatgaaaaatccctctccccatcatcagtttttga
gi|5 : ttgcaaaaacgacaggtctTT-CTGCAT-ATTTTGGGAGGTATATGGAATAT-CGGGACGAA--CT-------TTGGTAGG--AAT-A-TAAAT--A----GAT-TGTGTATGAA------TATA--TTAGAAT-ACAGAGTAGAAC-TTTA-----A-ATCATTTGACTT-ATT-GTTT-AT-TGTT------------TTGGGCACGCTAT------ATTT---A-A----AGTTT--T--T-TAC------------CTT---GACTC-T---A-TG---ACAGTAATTTtgaatatattagaatacagagtagaactttaaatcatttgacttattgtttattgttttgggcacgctatatttaaagttttttaccttgactctatgacagtaatttaacgtaa
gi|6 : ttgcaaaaacgacaggtctacattttgttgagtggtattagggctgagcccagctaaaggtcgacctaaaaataatcgaggca-----C----------------------GAGTA-----GC--AT-----C-----TCCATATATTAAGCATTTTCTTCATTATCTTGGGAAGTATACGGAATTT-CAGGACGA---CT-------TTGGTAGG--AAT-G-TG--G--ATT--GAT-TGTGTATAAA------TATA--TTGGGAT-ACAGAGTGGAAT-TTTA-----A-ATCATTTGGTTT-A-----TT-GT-TTTTTCATTGGC---------------AT------ACTT---C-G----AGCCC--T--A-TAC------------CTT---TACTC-TAGCTATA---ATAGTAAGTTCTGACCCAAGCGATA----C--AAT--TACCTGTGaacgtaa
gi|7 : TGT-AA-TG-----TATAAACATTTTG-GTACACT-GC-CA-AGATCCA-GG-TGAAATTC----------------------GAGCAAAAAGGC--AT-----T-----TTTCTGAATT---CATAT-CTGCAT-ACCTTGGGAAGTATACGGAATTT-CGGGATGAA--CTTACA---T--GTAGG-TGGTAA-TG--TCGATT--GAT-TATGTGTGAA------TATA--TCAGAAT-ACAGAGTAGAAT-TTT------ATATCTCTTCGTTTAA-T-GTTT-TT-T
gi|8 : T-ATCTTACGAAGTATACGCAAGTT-CGGGATGA----C-------T--ATCGA-T----------T--G----G-T-TATGCGTGAA------TATG--TTAGAAT-GCAGAGTAGAATATTT-------TACCATTTGGTAC-A-TTGTTT-GTTTTTTTTATTGGCAAACTTGTGTATTCTTT------ATTC---A-G----AGACC--TAGA-TAC------------CTT---AACTA-C---T-TA---ATTGTAAATCCGAGCCCAAGTAATA----C--Atagcatgtgcatcattagata
gi|9 : G----GGTCCGGGC-CTTA-TGTTTACACTACTATACAGAATGTTAGTGCATTACAAGAAATTG-CATACATAG---TCA--AATGTTCAACATTAGAAGGAATTT-GAG-------GTTGAATTTCTCACTCCAATTCATAAACTGAAGTCTGTAATACATGTAGCTCCAAGTGGCT-AA-AATTTTAAAACCGTCAACACTTCCA----CTAAC---------gct
blockSeqs : TATTTATATTCCTAC G A CCA C ATGAATTCAGAAAAC CGA T C C GG G T CATG T T AT TGTTTAC T A G ATTGCA C CATGTCA G T TTTCTAA C T ATACAT AA . A ACTT AGCCATTTT A T A T ACG TTT T GTT C T G TGATACTGA C TGTACAAAC CTATTAATGGG TA A ACA TTC GC CTTGT AT A GTTC G C AA AG G CAGAT C A TGTCTG G T AGTG G TCA A A TG T G TCAACTTATAAATGCTACTT GAA TAA CT A A . C TCAA A ACA A G ACCCATGCAGATAAATTTCCAATAGAGAGCAAAAGGCAGT A AAG T T A ACTTACATGTAGGTGGTAATGTCGATT G C TTAATG TA . A AAA ATTGT AAA A G TTTAGT TTG T TTCT A TA AGA ATCTACATTGTA CAA TAGCTATA G TACGT AA
blockSeqs : AATC . . . T . . . T . T C G . T C C AT A A C GCAAT C CGTGTAT T T . G C ATACAT GG . T . . G A . A . A T . T G ATACAAAA A TAA CTAATAACAGA A G AG T TC T AT A . C A CA . . TAGT T G TGGACA T . AGCG A TT A . TC . A GATAATTTA ACA TG . A . . C GTAC G AG C . CACAGGTAAAATTCAAATAAAAATAATAG A . . . . ACTTTGGTCATGTTGGTGGTGATGTA . G . . . . AA ATTGT GTT A G . TT . . T . GT . G CTTAATT G TAG .
blockSeqs : . . G C T G T C CTCAT C GTCA G . . T T A GC . A . . G ATAAA T TAA . T . A T TT AC A . . T G . . TAGA T A TGGCTG C . AGTG A TT C . TT . A ATTATTTA ACA TT . T . . C GCT . CA T . TGAAATTCGAGCAAAAAGGCATT A . . . . AGTTAAATAGTAATGTAGATT . T . . . . AT AATGT GG G G . . . . T . A . . TTTTATT C T .
blockSeqs : A A G AT . G . . . C . . A . . CAA . . . . TAGA A A TGGTT A . AACG A GC A . . . . CACTT CT TT . G . . T . . . . . ACTTTGGTAGGAATATAAATA . G . . . . AA ATTGT GT A A . . . . T . A . . ATGTA G A .
blockSeqs : T . . AAA C G T . . GTC . . C . . . . . . . CTTTGGTAGGAATGTGGATT . A . . . . AT ATAG GT A C . . . . T . A . . TTTA A T .
blockSeqs : . . . . A . . . . . . ACTTTTGCAGTAATGTA . A . . . . AA AT AT G G . . . . T . A . . TATA A T .
blockSeqs : . AATCTGGTAGTAGTGT . A . . . . AA T GT G A . . . . T . A . . TTCA A C .
blockSeqs : . CTATCGATTG . A . . . . AT A TT G G . . . . T . A . . TTTA A C .
blockSeqs : . TATAGATT . G . . . . T A . A A . . . . C . A . . TATG T .
blockSeqs : G . . . . . A . . . . . A . T . . CTTA G
blockSeqs : . . . . . . . . A . . TTT
blockSeqs : . . . . . . . . . TAA
blockSeqCons : CAT**** GTN****** A***** ATACAA****** ATNACTT*************** TT** C***** ACTTTGGTAGTAATGTGGATT******************* AN****** AGT****
originalCons : TACATAATC--A-ATT---ACTCC---CATAGTTCGTCCCGAA----CGTATACCA-TATACTTCCCAAGATA------CGCAGAAAT-AATTCAGAAAA-TGCCT---TT-ANTTT-TAN-TCGAAATTTANCTG----GGTCCCGGC-CCTG-T------ACCACTANACAGAATGTTAGTGCATTGCAANAA-TCG-T-TACATAC---TGT--AATGTTCAACATTAGATANAATTTTGAA-------GTTGAATTTCTTACCCCAATTCATAAACTGAAGTCCGTAATACATGTAGCTCCAAGTGACTGNA-AATTTTAAAACCGTCNGCGCTTCCA----CTCAC---------GNCCGNCGCCTCTAATTACCCC-AA--A-GATATGAGG---ACCCGTAACNA--T--TGAGACTCAAATATTAATTTTGAT--ATACTAA--ATTCANTATAGTACAT-----AA-ATTATGCTAATAACGGATCTTTATAAAGGATACACAGAACTCTTATT-TGTCTATTTTCACCCAAACCACATTAACACT---AGGTGTTTGATAATTTATGATAG----TGANGTCGATTT--GGT-TAATTAGA-GGCACCGGTCGAAATGGCTGTGANAAGT-GAAAGCGCAGACGGTTTTACAATTTTC-AGTCACTTGGAGCTATTACGGACTTCAATTTAT-GAATTNGGGTAA-GAAAT--TCA--T--------CTA--TAACGTTGCACGTTCTAT-TGTAA--TNGCTTGTTGC-AA-TG-----CACAAACATTCTGTGCATAGTAGTACA-AGTNCCA-GG-CN-----C----------------------GAGTAAAA-GGC--AT-----T-----TTTCTGAATT---CATTT-CTGCAT-ATCTTGGGAAGTATACGGAATTT-CGGGATGAA--CT-------T--GTAGG-TAGT-A-TG--T--A----GAT-TATGTGTGAA------TATA--TTAGAAT-ACAGAGTAGAAT-TTTA-----ATATCATTTGGTTT-A-T-GTTT-GT-TTTTTCGTCGGCGAACTTGGGTACCCTAT------ATTT---A-G----AGTTC--T--A-TAC------------CTT---TACTC-T---T-TA---ATAGTAAATTCGAACCCAAGCGATA----T--AAT--TGCCTGTG
finalCons : TACATAATC--A-ATT---ACTCC---CATAGTTCGTCCCGAA----CGTATACCA-TATACTTCCCAAGATA------CGCAGAAAT-AATTCAGAAAA-TGCCT---TT-ANTTT-TAN-TCGAAATTTANCTG----GGTCCCGGC-CCTG-T------ACCACTANACAGAATGTTAGTGCATTGCAANAACAT----TACATAGTN------AATGTTCAACATTAGATANAATTTTGAA-------GTTGAATTTCTTACCCCAATTCATAAACTGAAGTCCGTAA-----GTAGCTCCAAGTGACTGNA-AATTTTAAAACCGTCNGCGCTTCCA----CTCAC---------GNCCGNCGCCTCTAATTACCCC-AA--A-GATATGAGG---ACCCGTAACNA--T--TGAGACTCAAATATTAATTTTGATATACAA------TTCANTATAGTACAT-----AA-ATTATGCTAATAACGGATCTTTATAAAGGATACACAGAACTCTTATT-TGTCTATTTTCACCCAAACCACATTAACACT---AGGTGTTTGATAATTTATGATAG----TGANGTCGATTT--GGT-TAATTAGA-GGCACCGGTCGAAATGGCTGTGANAAGT-GAAAGCGCAGACGGTTTTACAATTTTC-AGTCACTTGGAGCTATTACGGACTTCAATTTAT-GAATTNGGGTAA-GAAATATNACTT---------------AACGTTGCACGTTCTATT--TAA--TNGCTTGTTGC-AA-TGC-----ACAAACATTCTGTGCATAGTAGTACA-AGTNCCA-GG-CN-----C----------------------GAGTAAAA-GGC--AT-----T-----TTTCTGAATT---CATTT-CTGCAT-ATCTTGGGAAGTATACGGAATTT-CGGGATGAACTTTGGTAGTAATGTGGATT-------------------GAT-TATGTGTGAA------TATA--TTAGAAT-ACAGAGTAGAAT-TTTAN------ATCATTTGGTTTAGT----TT-GT-TTTTTCGTCGGCGAACTTGGGTACCCTAT------ATTT---A-G----AGTTC--T--A-TAC------------CTT---TACTC-T---T-TA---ATAGTAAATTCGAACCCAAGCGATA----T--AAT--TGCCTGTG
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|25 ): ATACTCATTATTGCGAGGTCAAGGTCTATAGCTCCCATGTCACTTCATTTTTCATGGGTATTTCTTCATATC
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111111111
lowQualScore : 666666666666666666 1 33333 2222 3333333 444444444444444 333 1 1 11 2222 11 22222222 555555555555555555555 1 2222222 5555555 2222 555555555 1 33333 222 22222 1 1111 222222222 11 222222222 33333333333 1 222 33333 2222 111111 4444444444444 1111 2222 222222 1 111111 22222 1111 0000000000000000000000000000000000000000000000000000000000 111 22222222222222222222 111111111 222222 111111111111 111111111111 1111111
lowQualScore : 888888888888888888 2 0 55555 2222 9999999 777777777777777 666 3 1 3 44 3 1 1111 7 4 00 99999999 7 1 1 444444444444444444444 6 0 77 0 5 6666666 1 1 0 0000000 44 8 0 1 1111 333333333 1 1 7 3 44444 333 0 1 77777 2 3 7777 44 222222222 11 8 666666666 11111111111 66 9 999 666 11 77777 44 3 1111 8 1 55 77 5 88888 1 0 0 1 333333 8 5 5555 1 777 2 6 44 88 4444444444444 0 4444 8 8 666 2222 111111 3 777777 00000 7 4444 1 5555555555555555555555555555555555555555555555555555555555 3 444 6 5 4 3 88888888888888888888 22 4 0 7 55 1 55 3 444444444 3 666 55 666666 4 3 4 2 0 0 888888 999 3 6666 1 44 5555 555555555555 888 000000000000 1 0 0 5555555 66
lowQualScore : .................. . . ..... .... ....... ............... ... . . . .. . . .... . . .. ........ . . . ..................... . . .. . . ....... . . . ....... .. . . . .... ......... . . . . ..... ... . . ..... . . .... .. ......... .. . ......... ........... .. . ... ... .. ..... .. . .... . . .. .. . ..... . . . . ...... . . .... . ... . . .. .. ............. . .... . . ... .... ...... . ...... ..... . .... . .......................................................... . ... . . . . .................... .. . . . .. . .. . ......... . ... .. ...... . . . . . . ...... ... . .... . .. .... ............ ... ............ . . . ....... ..
lowQualScore : 000000000000000000 0 7 77777 7777 0000000 333333333333333 777 3 0 3 33 7 0 2222 0 2 22 88888888 5 4 0 444444444444444444444 0 6 66 8 6 0000000 4 4 8 6666666 22 0 6 0 2222 333333333 0 0 3 3 33333 333 7 0 77777 0 2 0000 22 444444444 00 8 444444444 77777777777 55 0 000 555 00 33333 00 2 2222 8 0 00 99 7 66666 7 7 4 4 444444 6 7 3333 7 777 5 7 66 88 0000000000000 8 4444 0 0 666 4444 000000 3 777777 55555 0 5555 0 8888888888888888888888888888888888888888888888888888888888 8 000 7 7 0 2 99999999999999999999 88 6 8 1 55 0 00 6 222222222 6 444 00 555555 0 6 4 3 2 9 888888 666 1 5555 8 22 3333 888888888888 555 222222222222 8 9 7 5555555 11
consensus : TACATAATC--A-ATT---ACTCC---CATAGTTCGTCCCGAA----CGTATACCA-TATACTTCCCAAGATA------CGCAGAAAT-AATTCAGAAAA-TGCCT---TT-ANTTT-TAN-TCGAAATTTANCTG----GGTCCCGGC-CCTG-T------ACCACTANACAGAATGTTAGTGCATTGCAANAA-T--CA-TTACATAC-TGTC-AAATGTTCAACATTAGATANAATTTTGAA-------GTTGAATTTCTTACCCCAATTCATAAACTGAAGTCCGTAATACATGTAGCTCCAAGTGACTGNA-AATTTTAAAACCGTCNGCGCTTCCA----CTCAC---------GNCCGNCGCCTCTAATTACCCC-AA--A-GATATGAGG---ACCCGTAACNA--T--TGAGACTCAAATATTAATT----TTGAT--AT--AC-AA--TTCANTATAGTACAT----AA--ATTATGCTAATAACGGATCTTTATAAAGGATACACAGAACTCTTATT-TGTCTATTTTCACCCAAACCACATTAACACT---AGGTGTTTGATAATTTATGATAG----TGANGTCGATTT--GGT-TAATTAGA-GGCACCGGTCGAAATGGCTGTGANAAGT-GAAAGCGCAGACGGTTTTACAATTTTC-AGTCACTTGGAGCTATTACGGACTTCAATTTAT-GAATTNGGGTAA-G-------------AAAT-ATTACT-TAA-CGTTGCACGTTCTAT-T-TAATA-----GCTTGTTGCAA-TG-----CACAAACATTCTGTGCATAGTAGTACA-AGTNCCAGGGCN-----C----------------------GAGTAAAA-GGCA--------T--T--TTTCTGAATT---CATTT-CTGCAT-ATCTTGGGAAGTATACGGAATTT-CGGGATGAACTT---T---GGT---------AGTAATGTAGATTGATT--ATGTATGA--ATATATTAGAAT-ACAGAGTAGAATTTT-A------NATCATTTGG-T---T--TA--GTTT-G-TTTTTTCGTCGGCGAACTTGGGTACCCTAT------ATTT---A-G----AGTTC--T--A-TAC------------CTT---TACTC-T---T-TA---ATAGTAAATTCGAACCCAAGCGATA----T--AAT--TGCCTGTG
Reference ( family-947 ) : TACATAATC--A-ATT---ACTCC---CATAGTTCGTCCCGAA----CGTATACCA-TATACTTCCCAAGATA------CGCAGAAAT-AATTCAGAAAA-TGCCT---TT-ANTTT-TAN-TCGAAATTTANCTG----GGTCCCGGC-CCTG-T------ACCACTANACAGAATGTTAGTGCATTGCAANAA----CA-TTACATA---GTN-AA-TGTTCAACATTAGATANAATTTTGAA-------GTTGAATTTCTTACCCCAATTCATAAACTGAAGTCCGTAA-----GTAGCTCCAAGTGACTGNA-AATTTTAAAACCGTCNGCGCTTCCA----CTCAC---------GNCCGNCGCCTCTAATTACCCC-AA--A-GATATGAGG---ACCCGTAACNA--T--TGAGACTCAAATATTAATT----TTGAT--AT--AC-AA--TTCANTATAGTACAT----AA--ATTATGCTAATAACGGATCTTTATAAAGGATACACAGAACTCTTATT-TGTCTATTTTCACCCAAACCACATTAACACT---AGGTGTTTGATAATTTATGATAG----TGANGTCGATTT--GGT-TAATTAGA-GGCACCGGTCGAAATGGCTGTGANAAGT-GAAAGCGCAGACGGTTTTACAATTTTC-AGTCACTTGGAGCTATTACGGACTTCAATTTAT-GAATTNGGGTAA-G-------------AAAT-ATNACT-TAA-CGTTGCACGTTCTAT-T-TAATN-----GCTTGTTGCAA-TG-----CACAAACATTCTGTGCATAGTAGTACA-AGTNCCAGG-CN-----C----------------------GAGTAAAA-GGCA--------T--T--TTTCTGAATT---CATTT-CTGCAT-ATCTTGGGAAGTATACGGAATTT-CGGGATGAACTT---T---GGT---------AGTAATGTGGATTGATT--ATGTGTGA--ATATATTAGAAT-ACAGAGTAGAATTTT-A------NATCATTTGG-T---T--TA--GTTT-G-TTTTTTCGTCGGCGAACTTGGGTACCCTAT------ATTT---A-G----AGTTC--T--A-TAC------------CTT---TACTC-T---T-TA---ATAGTAAATTCGAACCCAAGCGATA----T--AAT--TGCCTGTG
gi|1 : TACATAATCTAATATT---ACTTT---CATAATTTACCCAGAAATTTCGTATACTAGTATACTTCCCACGATAAGTGTATGCAGAGATCAATTCAGAAAAATACCTA--TT-AGTTT-TAC-TTGAAATTTACTTG----GACCCTAGC-ACTG-T------ACTACTA-ACAGAATCTTTGTGAATTGTAAAAA----TAGTTGTATA---G---AA-TCTGCAACATTAGATATATATTTAAA-------ATTAAACTTCTTACCCTATTTTATAAATTGAAGTCCATA------GTAGCTCCAAGTGACTGTATAGTTGCAAAACTGTCTGCGCTATCA----CTCAC---------GCCCGCCGTCTTT--TTACCCC-AACAG-GACAGAAGG---ACCCAAAACGA--TATTGAGATTCAAATATTAATTATAGTGAAT--ATTAAC-AA--CTTAATATTGTACAC----AG--ACGATG----------ATCTTAATAAA---TGCGCAGAACTCTTATTATGTCTGTTTCAACCCAAACCACCTCAACAC----AGAAACTTGACA--TT-TGATAA----TGAAGTCAATTT--GGG-TAATTATT-GGCAATGGTCAAGACGGTTGTGACACGT-GAAAATACAGATGGTTGTACAATTTCC-AGTCACTTGGAGCTATTACGGACTTCAATCTAT-GAATTGGGGTAA-G-------------AAAT-AT--CTATAA-CGTTGCATGTTCTATGTGTAATT-----GCTTGTTACAACTGATATTCAGTAACATTCTGTGTATAGTAGTATACAGTGCCAGG-CT-----C----------------------GAGT-----GACA--------T--T--TTTCTGAGTT---GATTT-CTATAT-ATCTTGGGAAGTATACGAAATTT-CGGGATGAAGTA---A---GCT---------AGT-ATGTAG---------ATGTATGA--ATATATTAGAATAACAAAGTAGGATTTT-ATACATGTATCATGTGGTT---T--TG--GTGT-A-TTTTTTTATCGGCGAACTTGGGTACCCTAT------ATTT---A-G----AGTGT--T--T-TAC------------CTT---TACTG-T---T-AA---ATAATAAATTCAAACCCAAGCGATA----T--A----CGCCTGTG
gi|10 : --GAT-CAACCAGATGACACCAGTCAAAATGGTT-CAAGAAGT-GAAAGTGCAGACGGTTTTGCAAT-------------GGAGCTATTGAGGATTTCAGTTCAT-GAATTGGGGTAA-GAGGTTCAACTTATAAAT-GCTACT-TAA-TGTTACGAATTCTAT-G-TAATA-----GCTTGTTGCAA-TA-----CAC
gi|11 : GATAA----TGACGTTAATTT--GGT-TGGTTAGT-TGTACCGGCTGAAAT---------AAGT-GAAGTC-CAGACGGTCTTACAATTGTT-TGTCATTTGGAGCTATTAAGGACTTCAATTTATAGAAT---GATAATG-------------A------CACT-TAA-TGCCGC-CTTTCTAT-T-CAATA-----GTTTGCAGCAG-TG-----CACAAAAATttttttatt
gi|12 : AATTTATGGCATGAAATC---T---GGT---------AGTAGTGTGA--TG--T--ATATCCGG--GTGTATT-GTAT-AT----CAGAATTTTAA------AATCATTTGG-T---T--TA-------------TTAACCAGCGAACGTCTGTACCCTGT------ATT---------------------------------------TT---TACTC-C---T-TAATTATAGCAATTTCGAAACCAAGCGATA----TAGAAT--TGCTTGTG
gi|13 : ataaACTATACAGAATGTTAGTGCATTACAAGAA-----A-TTGCATACATGTC-AAATGTTCAACATTAGATAGAATTTTGAA-------GTTGAATTTCTCACTCCAATTCATAAACTGAAGTCTGTAATACATGTAGCTCCAAGTGGCTAAA-AATTTTAAAACCGTCAACACTTCCA----CT
gi|14 : ACAAAACAGGGTGTTAGTGCATTGCAACAAG---CAATTACATACGTGTATAA-TGTTCAACATTAGATATAATTTTGAATTTCTAAGTTGAATTGCATACCCCAATTCATTAGGTGAAGT--G----------------AAGTGATTGGA-AATTTTAAAAC
gi|15 : ctagtacaaaTGTGT--ATATATCAGAAT-ACTGAGTACAATTTT----------TTGTTCGG-T---TAATA--GTGG-G-TTTTTT-ATCGGCGAAT----ATACCCT-T-------TCT---ATG----AG-TC--T--GTTAC------------CTTCAATATGCAT---G-TA---A-AATAATTTCGAATCCAAGAGACA------------TGCCTGTG
gi|16 : tgtTTT--GGCGTAATTAGA-GGTGACTCTCAAAATGTCTGTTA-AAGT-GAAAGCGg
gi|16 : GTCACCTCTAATTACGCC-AA--A--ATTTGAAGTTTACCCGTAACTA--T--TGAGG-TCAAATATTCATT----TAGAT-------C-AA--TTCACTATAGTACATGTACAAACATTATGCTAATAACatttgaagtttacccgtaactattgaggtcaaatattcatttagatcaattcactatagtacatgtacaaacattatgctaataactttt
gi|17 : cgctttcactttaacagacattttgaga----TTGAT--AT--AC-AAAATTGA-TATAGAATAT----AA--ATTGTGCTATTAATGGGCCCTTGTAAA-GATATACACAAATTTTA-T-TATCTATTTGCACCCCTATTATATTAACA-T---AGGTGTTTGATGATTTATtttt
gi|18 : aaaaaTGAGAAGTATACGGAATTT-CGGGATGAACTT---T---GGTCATGTTGGTGGTGATGTAGATTGCTTGAATTAATG----TATATCAGAAT-ACAGAATAGAACTTT-A------AATCATTTGG-T---T--TATTGTTT-G-TTTGTT
gi|19 : tcACGGAATTT-TGTGTTGAACTT---T---TGC---------AGTAATGTAAATTG-TT--G---GTGAATATATATTTGAAC-ACAGAGCAGAA-TTT-A------T-TCATT--G-T---T--TA--t
gi|2 : gcagattttgtgtgaAAA-ATTAATT----TTGATTGAT--ACTGA--TTCAATGTAGTACAT----AA--ATTATGCTAATAACAGATCTTTA-AAAAGATACACAG--CTCTTAT---GTCTATTTTCATCCAAACCACATTAGCACTTGTAGGTGTTTGATAATTTATGATAG----T-AAGTCCATTT--GGT-TAAT----------CAGTCAAAATGGACATGATGTGT-GAAAGTGTGGACAGCTTTACAATTTTT-AGTCACTTGGAGCTATTACGGACTTTAATTTAT-AAATTCATCTT--G-------------AAATGATAATT-TAAGCATTA-ACATTCTAT----AATACCTTTGCTTGTTGCAAATG------ACAAACATTTTAT-CAAAGGAGTA-G-AGTACCAGGGCA-----C----------------------AGGTAAAA-TTCAAATAAAAATAATAGTCTATGA------CATTT-TTGCAT-ACCTTTGGAGGTATACAGAATGC-TGTGATTAAGTT---A---AAT---------AGTAATGTAGATTGATT--ATGCATGA--AAATATTAAAAA-ACAGAGTAGAATTCT-A------AAACAGTTAG-T---C--T----TTTAA-ATTTTTCGTCGGCGAACTTGGGCACCCTAT------ATTT---A-G----AGATG--T--A-TTC------------CTT---TACTC-T---T-TA---ATGGTAAATTCCAACCTA---GATG----T--AAT--TGCCTGTGttgattgggg
gi|20 : ATTT--GGT-AAAT-AAA-GGAACCGGTCGAAA------TGACAAGT-GAA-----------TTTT-CATTTTTCAAGTCGCCCTGATCTATGAAAGACTTCATTTTAT-GAA
gi|21 : TTTTTCATCGGCAAACTTGAGTGCCCTGT------CTTT---A-G----AGTTC--T--A-CAC------------CTT---TACTC-T---T-T----ACAGTAAATTCGAACCCATGCGATA----A--AAT--TGCCAGTaagaaggaat
gi|22 : ACTTAGGTACTCTATTTTAGTATTTTT-A-G----AATTC--T--A-TAC------------ATT---TATTC-T---A-TA---ATAGTTAATTCAAGCCCAAGTGATA----T--AAT--TGCATGT
gi|23 : tt-TTTTCTCATCGGTCAACTTGGCTACCCTAT------ATTT---A-G----AGTTC--T--A-TAC------------CTT---TACTC-T---T-CA---A
gi|24 : atagacagttataaatatcgcaagaagttTTTTGTCGGCGAACTTCAGAACCCTAT------ATCT---A-A----AGTTC--A--A-TACATCTACATTGTACTTG--TACTT-T---T-TA---ATAGTGAACTCAAA
gi|3 : AACTTATTATGGGTTCTCATATCG-TTTAGGGG-TAATTAGA-GGCACCAGTCAAAATGGCTGTGAAAAGTTGAAAACGCAGACGGATTTACAATTTGC-ATTTATTTGGAACTGTTACGGACTTCTATTTAT-AAATTTGGGTAA-G-------------AAAT-ATTATT-TAA-TGTTGCACATTCTA--T-TAATG-----AGTTGTTACAA-TG-----CACAAACATTCTA-GC-TAGTGATACA-AATCCCAGGACC-----CATGCAGATAAATTTCCAATAGAGAGCAAAA-GGCA--------G--T--TTTCTGAATT---CATTT-TTGCGT-ATCTTGAAAAGTATATATACGTT-CGGGATG-----------------------------TATAGATTGATT--ATGTACGA--GTTTAATAGAAT-ACAGAGCGGGATTTT-A------TATCATTTGG-T---T--GA----TT-G-TTTTTTCGTCAGCAAACTTGGGCATCCTAT------TTTTTTGA-GTTCTAGTTC--T--A-TAG------------TTT---TACTC-----T-AA---ATGATAAATTCAAACCCAAGCGATATACGT--AAT--TGCCTG
gi|3 : TACATAATC--A-AT--------C---TATA---CATCCCGAA----CGTATA----TATACTTTTCAAGATA------CGCAAAAATGAATTCAGAAAACTGCCT---TTTGCTCTCTAT-TGGAAATTTATCTGCATGGGTCCTGGGATTTG-T------ATCACTAGCTAGAATGTTTGTGCATTGTAACAACT--CA-TTA-ATA---G---AA-TGTGCAACATTAAAT--AAT------------------ATTTCTTACCCAAATTTATAAATAGAAGTCCGTAA------CAGTTCCAAATAAATGCA-AATTGTAAATCCGTCTGCGTTTTCAACTTTTCACAGCCATTTTGACTGGTGCCTCTAATTACCCCTAA--ACGATATGAGA---ACCCATAATAAGTT--TAATACTCAAATATCAATT----TT--T--AT--A--AA--TTCATTATAGTGCA-----------TATG-----------TCTTTAT-AAGGATACAC--AACTTTTGTTCTGTATATTATTATCTAATCCAtaatactcaaatatcaatttttataaattcattatagtgcatatgtctttataaggatacacaacttttgttctgtatattattatctaatcca
gi|4 : caggcaattacgtatatcgcttgggtttgaatttatcatttagagtaaaactatagaactagaactcaaaaaaataggatgcccaagtttgctgacgaaaaaacaatcaaccaaatgatataaaatcccgctctgtattctattaaactcgTTTCG-CTGTGAACTTGGGTAACC--T------ATTA---A-G----AGTTTTAT--A-TAC------------CTT---TACTCTT---T-TATT-ATAGTTAATCAAAATCTACGAAATA----T--AATAATGTCTGTG
gi|5 : ttttaaaTACACAATC--T-ATTTATATTCCTACCAAAGTTCGTCCCGA-------TATTCCA-TATACCTCCCAAAATA------TGCAGAA---------------TGCCTCGATT-ATTTT-TAGGTCGACCTTTAGCTG----GG-CTCAGC-CCTAAT------ACCACTCAACAAAATGTttctgaatgaatcaattaaagtcaattatgtaatttttacacacagtctgcagtctccagttcagatgaccagagttctcaaattctactctgtttatttttattttcaaaagttttcttttgcaaaaagtttcagattaaaaaacacctccctctcagtctctaattcattgcctataaaacatgaaaaatccctctccccatcatcagtttttga
gi|5 : ttgcaaaaacgacaggtctTT-CTGCAT-ATTTTGGGAGGTATATGGAATAT-CGGGACGAACTT---T---GGT---------AGGAATATAAATAGATT--GTGTATGA--ATATATTAGAAT-ACAGAGTAGAACTTT-A------AATCATTTGA-C---T--TA----TT-G-TTTATT-GT-------TTTGGGCACGCTAT------ATTT---A-A----AGTTT--T--T-TAC------------CTT---GACTC-T---A-TG---ACAGTAATTTtgaatatattagaatacagagtagaactttaaatcatttgacttattgtttattgttttgggcacgctatatttaaagttttttaccttgactctatgacagtaatttaacgtaa
gi|6 : ttgcaaaaacgacaggtctacattttgttgagtggtattagggctgagcccagctaaaggtcgacctaaaaataatcgaggca-----C----------------------GAGTA-----GCA--------T--C--TCCATATATTAAGCATTTTCTTCATTATCTTGGGAAGTATACGGAATTT-CAGGACGA-CTT---T---GGT---------AGGAATGTGGATTGATT--GTGTATAA--ATATATTGGGAT-ACAGAGTGGAATTTT-A------AATCATTTGG-T---T--TA----TT-G-TTTTTTCATTGGC---------------AT------ACTT---C-G----AGCCC--T--A-TAC------------CTT---TACTC-TAGCTATA---ATAGTAAGTTCTGACCCAAGCGATA----C--AAT--TACCTGTGaacgtaa
gi|7 : TGTAA-TG-----TATAAACATTTTG-GTACACT-GC-CA-AGATCCAGG-TGAAATTC----------------------GAGCAAAAAGGCA--------T--T--TTTCTGAATT---CATAT-CTGCAT-ACCTTGGGAAGTATACGGAATTT-CGGGATGAACTTACATGTAGGT---------GGTAATGTCGATTGATT--ATGTGTGA--ATATATCAGAAT-ACAGAGTAGAATTTT-A------TATCTCTTCG-T---T--TA--A--T-G-TTTTTT
gi|8 : T-ATCTTACGAAGTATACGCAAGTT-CGGGATGA-CT--------------------------ATCGATTGGTT--ATGCGTGA--ATATGTTAGAAT-GCAGAGTAGAATATT-T------TACCATTTGG-TACAT--T---GTTT-GTTTTTTTTATTGGCAAACTTGTGTATTCTTT------ATTC---A-G----AGACC--TAGA-TAC------------CTT---AACTA-C---T-TA---ATTGTAAATCCGAGCCCAAGTAATA----C--Atagcatgtgcatcattagata
gi|9 : G----GGTCCGGGC-CTTA-TGTTTACACTACTATACAGAATGTTAGTGCATTACAAGAAATTGCA-T-ACATA---GTC-AAATGTTCAACATTAGAAGGAATTT-GAG-------GTTGAATTTCTCACTCCAATTCATAAACTGAAGTCTGTAATACATGTAGCTCCAAGTGGCT-AA-AATTTTAAAACCGTCAACACTTCCA----CTAAC---------gct
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|25 ): ATACTCATTATTGCGAGGTCAAGGTCTATAGCTCCCATGTCACTTCATTTTTCATGGGTATTTCTTCATATC