lowQualScore : 333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333
lowQualScore : 11 1 888888888888 1 555555555 1111 11 1111 2222222222 11 44444444444444444444 33333333 111 111 11111 1 222222 333333 1 1 222 11 11 999999999999999999999999 11 111 2222 555555555555555 555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 11 222
lowQualScore : 2 4 55 66 0 8 0 333333333333 3 4 4 4 999999999 3 6 1111 7 3 2 0 00 8888 9999999999 4 3 33 66666666666666666666 8 8 66 00000000 111 6 6 6 77 888 4 2 2 22222 1 1 4 3 3 8 7 1 333333 4 8 8 111111 2 4 5 2 6 3 1 6 4 1 999 0 222 2 2 55 2 44 0 2 555555555555555555555555 2 6 33 999 1111 99 333333333333333 888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 22 6 111
lowQualScore : . . .. .. . . . ............ . . . . ......... . . .... . . . . .. .... .......... . . .. .................... . . .. ........ ... . . . .. ... . . . ..... . . . . . . . . ...... . . . ...... . . . . . . . . . . ... . ... . . .. . .. . . ........................ . . .. ... .... .. ............... ......................................................................................................................................................... .. . ...
lowQualScore : 5 0 55 44 6 0 0 999999999999 9 1 0 0 999999999 6 0 5555 3 6 8 5 00 1111 7777777777 0 4 00 00000000000000000000 8 0 66 66666666 777 7 7 7 88 555 3 2 5 88888 0 4 8 8 6 0 8 4 000000 4 0 0 888888 2 0 5 0 0 2 2 0 0 2 000 0 888 0 5 22 0 00 2 5 888888888888888888888888 2 5 88 222 0000 55 888888888888888 666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 00 0 000
consensus : NNCGCNTGTNAANNGCCTGAAAACGAGGATGTTAA-AAGACCT------AGGCNCACACCAAAGTC-C-T-A--TA---ATGCA-ATATN---TTCATG-C-ACGCAGTGCGT--GATGGCG--TAAGG--AAG--T-TTGA-ACAAAGNTCG----NTCCCCAAAAA-TGAAGTTTGTGAGACA-ACATACCGTCAGG-----GCAAAAGTA---CCTCCATC-CTG-CT-TCATTAN--CGGTCATNTCTGATGAGTNACATGAC-TGATGGATGCGACATTTCTTTAGTTGGAGATTAAANCCAAAA-CATGCACA------ANGTTCACCAC-AC-T-----NAACACCACACTCNATGAGGGATTCCGAATGGTGTTTTGTCATGAGGCTGTTATTCGACACTTTGTTGTCAAGNGAAGGTTCCACCGTG-TAG--CGCCTGGATACGACATCTGCCN-TGGACAAAGTACACAGAATGAAG--CGTGGAG-ACAGAAAACAGCNAA--TGCATAGAGTGATNACTTTCATTTCGTCGGTTGGAG----ACTCAGCACAGTTATTAGC-----ACATA-TCA------AATCA---------CGTGAT------GAT--CAGGAAAAACNCG-AGTCAACGACAGAATTCCTC---ATCGCTATCTTCTGTCGGACTTACAGTCGCT---TT---ATATGCGTGTTAGAACGGACGCTTGTTCCTCCCATTGTTGAATACGAT
Reference ( gi|3 ) : TGCGCGTGTTAAGTGTCTGAAAACGAGTATGTTAA-AAGCCCTTGTCTTAGGCACACACCAAACTC-C-TTA--TAA--ATGCA-ACATT---TTCATG-C-ACGCAGTGCGT--GATGGCG--TAAGG--AAA--T-TTGA-ATAAAGTACA----GTTCCCGCATA-TGCGGGTTGTGAGACA-ACATACCGTTAGG-----GCAAAAGTA---CCTCCATC-CTG-CT-TCATTAC--CGGTCATTTCTGATGGGTCACAAGAT-TGATGGATGTGACATTTCTTTTGTTGAGGATTAAAACCAAAA-CACGCACA------ATGTTCACCAC-AC-T-----TAATACCACACTCAATGAGGGATTCCGAATGTTGTTTTGTCACGAGACTGTTATTCGACACTTTGTCGTCAAGTGAAGGTTCCATTGTG-TAT--CGCCTGGACACGACCTCCGCCA-TGGACAAAGTACATAGAATGAAGAACATGAAGAACAAAAAACAACGAA--TGCTTGGAGTGATTATGTTCATTTCATCGGTAAGAG----GCCAAACACAATTTGCAGC-----ACACA-TCA------AGTCA---------AGTAAA------GAT--CAAGAAATACTC--CGTCAACGACAGGCGTCCTT---TTTTTTATCTTCTGTCGGATATCC---CACTGAATTCCAATA---ATGTT---------GCTCATCCCTCCCATTGGTTAATACGAT
gi|2 : CGCGTGTAAAGGGCCTGAAAACGAGGATGTTAA-GAGGCCTTGTCTTGGGCAAACACCAAAGTC-C-TTA--TA------CG-ATAAT---GTCATG-C-ACGCA-T-CTT-------C---TAGGG--AAG--T-T-GA-ACAAAACACATGCAGTCCCCAAAAA-TGAAGTATGTGAGACA-ACATACCGTCAAG-----ACAAATGTA---GGTCCATA-CCG-CT-TCATTAG--CGGTCATTTCTGGTGCGTCACATGAC-TGATGGATGTGACATTCCTTTAGTTAGAGATTAAAACCAAAA-CATGCACA------AAGTTCACCAC-ACATACATGTAACACCACACTCAATGAGGGATTCCAAATGGTGTTATGTCATGAGGCTGCTATTCAACACTTTGTTGTTAAAAGAAGGCTTCATTGTG-TAG--CTCCTGGACACTAAATTCGCTA-TGGACAAAGTACAC------AAG---GTGAAGTACAGAAACCAAGTAA--TGTATAGAGTGATTACTTTCATTTCCACG------G----ATTAAACACAGCTATTAGC-----ACATA-TTA------AACCA---------CGTGAT------AAT--CAGGGAAAACAC--AGTC-ATTACAGAATTCCTCAAAATCGCTATCTTCTTTCAGACTTACAGTCGCT---TT---ATATGCGTGTTAGAACGGACGCTTGTTCCTCCCATTGTTGAATACGAT
gi|1 : ttgtaaacacctacaaagactacatatctgcgatatagttttaatatcttgataccgttacagaggtaggcttttatcaaactcagaactatactaatttattgtaatgaaccagtcatgactgaaagacaaaagagagtagaaatgtaaaGCCTGTTAATTGTCTGCAAACGATGATGTTAAGAAGCCatc
gi|7 : taccatgcatcatctttatttgaaaatctgactggttaatagaaggtctgtactattgcatgatggctgccaaaggcgctatttactgcaatgatgaccccgaatcactgcctatactataaacacaatattgacatgtaggttttattacatgtaatgattgcttaaatttgaccacttacaaattcattagaaataacattgcatatgatgattattatgtcaagagtcgtagactaatggaagaaaacacccttgttatgcagaaactgcatcattattgatgtacccagttgtgtcttgtatcaatccatattctagacaactacaaagatcacattactcggatacaattgtaatatctagatatagttacagagacatattttgatcggacttagaagtttactaaattattgtgatgaaccagtcttatatatctaagacaagaagagagtggaaatctaaatAAAACAAGGTTGTGAA-AAGACCT----------ACA-ATCAAAGTC-C-T---------GTGCA-ATATT---ATCATA-C-ACGCAGTGCATTGGATGGCG---AAGG--ACATGT-CTGA-ACAAgcaatgctatattttcatctcgcagtttgtgatgatgtaaaggcaaagatacaaaattcaatcccataataaaggtctagaaaaaacataccgtcaggtttaaagtacctccatcctgcttcagtagcggtcagttctgatgagtcacatgactggtgaatgtgacatttctttagctggagattaaagccaaaaaatgtacaaagttcaccacactcaataccacattctatgagggagtccgaatggtgctttgtcacgaggctgttattcgacactttgttgtcaagagaaggatccacagtgtagtgcctggatacgacatctgccttagacaaagtacacagggtgaagtgcagaaaaccgcttatgtatagagtgatccttttcatttcgtcgattgaagactcaacacagttactagctcgaaaaacagttatggtacagttattatttaagaataaatcacgtgatgacaggaagaactcgtggtcaataacagaattcctcactatcttctgtcggatttacaggcgctttatatacgtgttaaaatggacgcttgctcctcccaccgttgaatgcgatatc
gi|6 : ttataccatgcagagactctattcaatgacatttaattttcattttaatatacacaaatcagggtgtctaaaggggtatattttcaacattcaacccctttatctataaagatttgaaatcgccaccttgttcctagcatgcgatgctcatttataaacgaaaaagaaagaaactcaaatgttgctatctttcgtattagaaacaaatctgtttacatagcattatatatttgaaaatcgcctttgcttcttaaattttagtattgatgtaggttataatttttgggggaaattcactaggcatcacacAAAACAAGGTTGTGAA-AAGACCT----------ACA-ATCAAAGTC-C-T---------GTGCA-ATATT---ATCATA-C-ACGCAGTGCATTGGATGGCG---AAGG--ACATGT-CTGA-ACAA
gi|11 : ttataccatgcagagactctattcaatgacatttaattttcattttaatatacacaaatcagggtgtctaaaggggtatattttcaacattcaacccctttatctataaagatttgaaatcgccaccttgttcctagcatgcgatgctcatttataaacgaaaaagaaagaaactcaaatgttgctatctttcgtattagaaacaaatctgtttacatagcattatatatttgaaaatcgcctttgcttcttaaattttagtattgatgtaggttataatttttgggggaaattcactaggcatcacacAACGAGGATGCTAA-CAGACC------------CAAACGGAAGTCAT-TTACTTAATGATACATGTATA---TTCGTG-C-GCGCAGAGCGT--GATGGAAT-TAAG----------TTGA-A-AAAG
gi|8 : cgtttcctatcattttatgaaacgagaacacatcagtctatatagtgctgatattctttaagctttaaaatgtatgaagaacgttttctgggacatacattatttcaaatgAGGCCCACACCACAGTC-C-T---------ACACA-ATGTA---TTCATG-C-ACCCAATGTGT--GATGAC---TAAGA--CAA--G-CTGA-ATAAagt
gi|23 : tttacaatatgtacagacggtagttcaatgaatctctagattcattactttatatgcacagacacgggtatgtgccttaaccttgaacccctttaatcaacaatgaactcatccatattgtgccaagtgtaggatgctcatttcgagatataagaaaagtcttctcttatcattttgtaaaatggatatatatctaccatacagtgcttataatttgaagtaagctctgtttgttttaaatctcagcttttgaatttagaattatattgtttggagaatgtttctcagggacataatttatttcaaacaaaacaaggttgtgaagAGACCCACACCAAAGTC-C-T---------ATGTA-ATTTA---TTCATGCC-ACTCACTGTGT--GGTGG-A--TAAGG--ATG--G-TTGA-ATAAA
gi|12 : tatgaagGGCCTACACCAAAGTC-CTTTAC-TAT--AT----ATATTTTGTTTACGAG-ATGC-GTGCGC--GGTGGCATTTAAGG--AAG----TTGA-ATAAAa
gi|4 : aaatgtttgatatttatagtgctcaatatttgaaataagctttctgtcttaaaatataccttctgataatagaattatattgtttgaggaacgttttctggaacacgcgagagtatgagggCACACCAAAGTC-C-T---------ATGCA-ATTTA---TTCATG-C-ACTCACTGTGT--GGTGGCA--TAGG-----A--TGTTGA-ATAAAGATCG----TTTCCCAAAAAATGAAGTTTGTAAGACA-ACATACCCGCAGG--------AAAGTAATGCCTCCATC-CTG-CT-TCAACAA--CAGTCATCAGTGATGGGAAACATAAT-CTATGGATACGACACGTATTCAGTTGAGGATTAAACCCAAAA-CATGTACAGCCGGAATGTTCACCAC-AC-T-----GAGCGGAACACTCTGTGAGGGATTCCGAAGGACGTTTTGTGATGATGCTGATATTCGACACCTTGTTGTCAAGTGAAGGTTCCACCATG-AAG--CGTTTGGATATTATATCTGCTT-TTGACAAAGTACACAAAATGTAG--TAT-----AC--AAAACAGCGAAATTGC--AGAGTGATGGCTCTCATGCTGCTGGTTAGAGATGTGC--AGCACAATTAATAGC-----ACGTA-TCA------AATAA---------AGTAAT------GAT--CAGAAAACAGAC--TGTCAGCAACTGG
gi|17 : agacccACACCAAATTC-T--------A--ATGCA-TTGTA---TCCATA-CGAC-CAGCGTCT--GATGACT--TGGGG--AAG----TTGA-ACAAAattactcaatgcctgctgtctgactgacaatggcttgatatacatggctattggtaacaga
gi|10 : atttgaaaaatgctctctctgttttcagttttagcttttgaatataggattacattgtatgaaaaacgatttcttggatacattgaagggtaACCGAAGTC-C-TAA--TAA--ATGCA-ATATA---TCCATG-C-ACACAG-------AATGGTG--AAATG--AAG--T-TTag
gi|1 : atttactttaactttccaatcagcaatgaactacgtgtaatttatacagtgcctagcatgcaatgctcgtttacaaatatataagaatatataagaaaaaaactcatgtgaatatcttgtgaaagatgtttaaacagtgataatttgaaatatgctctctttgttataaattttgccctcttagtttggaattatattgcttggagaacgaatttttgggacatgcgatatttcaaacaaaacgaggA--ATGCT-ATATT---TTCAT--C-TCGCAGTTTGT--GATGATG--TAAAGGCAAA------GATACAAAATTCA----AT-CCCATA-A-TAAAGGTCTAGAAAAA-ACATACCGTCAGG-----TTTAAAGTA---CCTCCATC-CTG-CT-TCAGTAG--CGGTCAGTTCTGATGAGTCACATGAC-TGGTGAATGTGACATTTCTTTAGCTGGAGATTAAAGCCAAAA-AATGTACA------AAGTTCACCAC-AC-T-----CAATACCACATTCTATGAGGGAGTCCGAATGGTGCTTTGTCACGAGGCTGTTATTCGACACTTTGTTGTCAAGAGAAGGATCCACAGTG-TAG--TGCCTGGATACGACATCTGCCT-TAGACAAAGTACACAGGGTGAAG----TG-----CAGAAAACCGCTTA--TGTATAGAGTGATCCTTTTCATTTCGTCGATTGAAG----ACTCAACACAGTTACTAGCTCGAAAAACAGTTATGGTACAGTTATTATTTAAGAATAAATCACGTGATGACAGGAAGAACTCGTGGTCAATAACAGAATTCC------TCACTATCTTCTGTCGGATagaca
gi|19 : taccatgcatcatctttatttgaaaatctgactggttaatagaaggtctgtactattgcatgatggctgccaaaggcgctatttactgcaatgatgaccccgaatcactgcctatactataaacacaatattgacatgtaggttttattacatgtaatgattgcttaaatttgaccacttacaaattcattagaaataacattgcatatgatgattattatgtcaagagtcgtagactaatggaagaaaacacccttgttatgcagaaactgcatcattattgatgtacccagttgtgtcttgtatcaatccatattctagacaactacaaagatcacattactcggatacaattgtaatatctagatatagttacagagacatattttgatcggacttagaagtttactaaattattgtgatgaaccagtcttatatatctaagacaagaagagagtggaaatctaaatgcctgttaattgtctgcaaacgatgatgttaagaagccgcA-TGAAGTTTGTAAGACA-A-ATACCCGCAGGAGAAAGTAGAAATG---CCTCCATCTCTG-CT-TCA-AACAACAGTCATCAGTGATGGGAAACATAATCTTATGGATACGACttacaggcgctttatatacgtgttaaaatggacgcttgctcctcccaccgttgaatgcgatatc
gi|5 : tcgttctccaaaaaAGATAGACATACCGTCATG-----GCAAAAGTA---CCTCCATC-CTGTCTATCATTAA--CGGTCATGTCTGATGAGTCACATGAC-TGATGAATGCGACATTCCTTCTGTTGGAG-TGAAAACCAAAAACATGCACA------ACGTTCACCACCAC-T-----GAACACCACACTCAATGGGGGATTCCGAATGGTGTGTTGTCATCAGGC-GTTATGTGACAATTTGGTGTCAAGTGAAGATTCC--TGTGCTATAGCGCCTAGATACGACATCTGCCACTGACCAAAGCA-----AATG--CGACATGGAGAAAAGAAAACAGCAAA--TGCTTAGAGTGGTGATTTTCATTTTGTCGGCAGGAA----ATCCAGCAAAATTATCAGC-----ATAGG-TCA------AATCA---------CGTGAT------GAT--CAGGAAAAACTCGGAGTCA--GACACAAGTCCTT---ACAT---TCTGCTGTCGAA
gi|13 : tgaatgaagaaaaaaataatcctgaattgaacataaaacaatatacaaacAGTA---ATTCCATC-CAA-AT-TCATCAT--CAGTCATATCCTCCGAATAACAAGTA-TGAAATACACAACACCTCCTTGTTTGCGAGTTAAACCCAAAA-CAGAAGCA------ATCTTTACCGC-AC-cttgcaaacgctttatatacatgt
9 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|9 ): TGAATATGTAGTTAATACTATATACAGAAACTCAAAGTGTGTTATTTAGAACCTCAACCCCTCTAATCAGCAATGAATTTCGTCCTAAATGGGATCAGTATGCAATGTGGCAATAAAACTTAGGTGACATATTTTTCCTGTCATTTTGGTAAACGAAAATATCTATTTATTATCGCCCATCACTTGGAAATAAGCTTTCTTTAGTTTAAATTTTAACTTTATGAATACAGGGGTATATTGTTTGGAGAACGATCCATTGATACGTTAAATTGCATCAAACCAAACCAAGGTTGTTTGGATAGGCCAATAAACAATGGACATATACTAATGCACATAGTGTGTAATAGGTTAATGAAATTCAACAAAAA
Unaligned ( gi|14 ): TATAATGCTCATATTTGCAATTTTTTTGTTTTAAATCTCAGCTTTTGAATATAGAACTGCATTGTTTTTTGGGGGGTTTTTTGTTTTGTATTTTGGGTTTTTTTTTGGGGGGGGGGGGAATGTTTTGCTAAACGAAACGAGGATATGAAGAGGCCGACGTCCTTTATTCAAATATGTATT
Unaligned ( gi|15 ): CTTTTCCTATCATTTTGTAAAACGGACATATCTGTTGATTTGTAACTCTATTTGTTTTTAATTTTAACTTCTGAGTACATGTTTGTTTTGTTTGCAGATCATTTTCAAATAAATCGAAGCTGTGAAGGAATCAGCACCGAAGTCCTAAAGTTTACAATGCATGTATATCCAA
Unaligned ( gi|16 ): TAGGCTTCGTTGGTTTGAATTTTAGCTTTTCAATATAGGATTACATTATTTGGAGACCGTTTTATGGGTTATGTGTTAAATCAAATAAAACTCGAGGATATGGAGGGACCCACACTAAATACTAGTAGTCGTCTGCGCAGTGCATGATGACCATGGGAAGTTCAATACCGT
Unaligned ( gi|18 ): AGATTGCATAAATATGTAATGGTACCCAAAAGTTGAAACAGGCTCTCTTTGTTTTAAATTTTAACTGTTAAATATAGGTCTGTATTGTTTTGAGAACGTTTCCTTAGACGTGCGCTATTTCAAATGCAACGAGGATATGGGCCCACTCCG
Unaligned ( gi|20 ): TATGTAGATTTGGTTTAATTAATGTTTACCTATTCAGAAACTCGGGTGTGTATACCTTAACTTTCTATTCCTCTTATCAGCAATGAATTTGTCCATATAATTCCAAGTTTA
Unaligned ( gi|21 ): CTTAGCTTTTGAAAAAAAGTTTATACCGTTTGGAGAACGGTATCTGGCATATAGATTCATTTCAAACAACTGTAGACACCCACATCAAAATCTCTGCGCATAGTA
Unaligned ( gi|22 ): TAACTAATCAGAACACAGACTGTTGGTAATTGGGTTAATCACTTGGCTACCTGCTTAACTGGCATCAGATAACAGACTATTGTA
Unaligned ( gi|24 ): CCCTTCTAATTAACAATGAACTCATCCATAT
Alignments
lowQualScore : 555555555555 33333333 11111 111111111 111111 222222 111 111111 11111111 111 7777777777 11 1 111 44444444444444444444444 222222 1111 33333333 4444444444444 11111111 11111
lowQualScore : 1 1 22 0 2 4 222222222222 3 88888 55555555 6 555 1 6 3 1 99 55555 111111111 3 0 999999 1 8 8 0 6 111111 000 5 5 5 5 1 1 1 0 1 5 2 6 7 1 6 999999 1 6 99999999 1 3 6 6 1 1 4 444 99 1 1 0000000000 0 1 11 1 1 9999 333 4 88888888888888888888888 333333 7777 0 66666666 7777 0 1111111111111 0 888 44444444 55 22222
lowQualScore : . . .. . . . ............ . ..... ........ . ... . . . . .. ..... ......... . . ...... . . . . . ...... ... . . . . . . . . . . . . . . . ...... . . ........ . . . . . . . ... .. . . .......... . . .. . . .... ... . ....................... ...... .... . ........ .... . ............. . ... ........ .. .....
lowQualScore : 0 0 00 7 1 9 444444444444 6 33333 77777777 7 888 0 7 3 8 22 44444 777777777 2 8 222222 0 0 0 6 7 888888 000 7 7 7 7 9 0 0 9 0 7 2 7 3 0 7 222222 0 7 77777777 0 2 7 7 8 0 6 000 00 4 0 4444444444 8 0 00 2 0 6666 000 0 22222222222222222222222 000000 0000 8 88888888 4444 6 2222222222222 6 000 88888888 44 77777
consensus : NNCGCGTGTTAAGTGTCTGAAAACGAGGNTGTTAAAAGACCT------AGGCCCACACCAAAGTC-----CT--A-TAA-TGCA-ATA---TNTTCATG-C-ACGCAGTGCGT--GATGGCG--TAAGG---A-A-GTTTGAACAAAGT---T-CGNTCCCCAAAA-A-TGAAGTTTGTGAGACA-ACATACCGTCAGG-----GCAAAAGTA---CCTCCATC-CTG-CT-TC-ATCANCGGTCATNTCTGATGGGTCACATGA-CTGATGGATGCGACATTTCTTTNGTTG-GAGATTAAAACC-AAAACATGCACA------ANGTTCACCA-CAC-T-----TAACGCCACACTCAATGAGGGATTCCGAATGGTG-TTTTGTCACGA-GGCTGNTATTCGACACTTTGTTGTCAAGTGAAGGTTCCACCGTG---TAGCGCCTGGATACGACATCCGCC-NTGGACAAAGTACACAGAATGAAG--TATG-AGAACAGAAAACAGCGAA--TGCNTAGAGTGATNATTTTCATTTCGTCGGTNGGAGAT-T-CAACACAATTANTAGC-------ACA-------------TATCA------AAT----CACGTGATGATCAGGAAAAACTC-G-A--GTCAACGACAGAATTCCT--C---ATCGCTATCTTCTGTCGGACTTACAGNCGCT---TT---ATATACGTGTTAGAACGGACGCTCGTTCCTCCCATCGTTGAATACGAT
Reference ( family-946 ) : NNCGCNTGTNAANNGCCTGAAAACGAGGATGTTAAAAGACCT------AGGCNCACACCAAAGTC-----CT--A-TAA-TGCA-ATA---TNTTCATG-C-ACGCAGTGCGT--GATGGCG--TAAGG---A-A-GTTTGAACAAAGN---T-CGNTCCCCAAAA-A-TGAAGTTTGTGAGACA-ACATACCGTCAGG-----GCAAAAGTA---CCTCCATC-CTG-CT-TC-ATTANCGGTCATNTCTGATGAGTNACATGA-CTGATGGATGCGACATTTCTTTAGTTG-GAGATTAAANCC-AAAACATGCACA------ANGTTCACCA-CAC-T-----NAACACCACACTCNATGAGGGATTCCGAATGGTG-TTTTGTCATGA-GGCTGTTATTCGACACTTTGTTGTCAAGNGAAGGTTCCACCGTG---TAGCGCCTGGATACGACATCTGCC-NTGGACAAAGTACACAGAATGAAG--CGTGGAG-ACAGAAAACAGCNAA--TGCATAGAGTGATNACTTTCATTTCGTCGGTTGGAGAC-T-CAGCACAGTTATTAGC-------ACA-------------TATCA------AAT----CACGTGATGATCAGGAAAAACNC-G-A--GTCAACGACAGAATTCCT--C---ATCGCTATCTTCTGTCGGACTTACAGTCGCT---TT---ATATGCGTGTTAGAACGGACGCTTGTTCCTCCCATTGTTGAATACGAT
gi|1 : GCCTGTTAATTGTCTGCAAACGATGATGTTAAGAAGCC---------GC-------------------------AA-TGCT-ATA---TTTTCAT--C-TCGCAGTTTGT--GATGATG--TAAAGGCAA-A-GAT---ACAAAAT---T-CAATCCC--ATA-A-TAAAGGTCTAGAAAAA-ACATACCGTCAGG-----TTTAAAGTA---CCTCCATC-CTG-CT-TC-AGTAGCGGTCAGTTCTGATGAGTCACATGA-CTGGTGAATGTGACATTTCTTTAGCTG-GAGATTAAAGCC-AAAAAATGTACA------AAGTTCACCA-CAC-T-----CAATACCACATTCTATGAGGGAGTCCGAATGGTG-CTTTGTCACGA-GGCTGTTATTCGACACTTTGTTGTCAAGAGAAGGATCCACAGTG---TAGTGCCTGGATACGACATCTGCC-TTAGACAAAGTACACAGGGTGAAG--TG-------CAGAAAACCGCTTA--TGTATAGAGTGATCCTTTTCATTTCGTCGATTGAAGAC-T-CAACACAGTTACTAGCTCGAAAAACAGTTATGGTACAGTTATTATTTAAGAATAAATCACGTGATGA-CAGGAAGAACTC-GTG--GTCAATAACAGAATTCCT--C---A---CTATCTTCTGTCGGATTTACAGGCGCT---TT---ATATACGTGTTAAAATGGACGCTTGCTCCTCCCACCGTTGAATGCGAT
gi|10 : taccatgcatcatctttatttgaaaatctgactggttaatagaaggtctgtactattgcatgatggctgccaaaggcgctatttactgcaatgatgaccccgaatcactgcctatactataaacacaatattgacatgtaggttttattacatgtaatgattgcttaaatttgaccacttacaaattcattagaaataacattgcatatgatgattattatgtcaagagtcgtagactaatggaagaaaacacccttgttatgcagaaactgcatcattattgatgtacccagttgtgtcttgtatcaatccatattctagacaactacaaagatcacattactcggatacaattgtaatatctagatatagttacagagacatattttgatcggacttagaagtttactaaattattgtgatgaaccagtcttatatatctaagacaagaagagagtggaaatctaaatACCGAAGTC-----CT--AATAAATGCA-ATA---TATCCATG-C-ACACAG-------AATGGTG--AAATG---A-A-GTTTAGACAatc
gi|11 : atttactttaactttccaatcagcaatgaactacgtgtaatttatacagtgcctagcatgcaatgctcgtttacaaatatataagaatatataagaaaaaaactcatgtgaatatcttgtgaaagatgtttaaacagtgataatttgaaatatgctctctttgttataaattttgccctcttagtttggaattatattgcttggagaacgaatttttgggacatgcgatatttcaaacaaaacgaggAACGAGGATGCTAACAGACC------------CAAACGGAAGTCATTTACTTAA-TGA-TACATGTA---TATTCGTG-C-GCGCAGAGCGT--GATGG-----AATT---A-A-G-TTGAA-AAAG
gi|12 : cgtttcctatcattttatgaaacgagaacacatcagtctatatagtgctgatattctttaagctttaaaatgtatgaagaacgttttctgggacatacattatttcaaatgGGCCTACACCAAAGTC-----CT--T-TAC-TATATATATTTTGTTTACGAG-ATGC-GTGCGC--GGTGGCATTTAAGG---A-A-G-TTGAATAAAagt
gi|13 : aaatgtttgatatttatagtgctcaatatttgaaataagctttctgtcttaaaatataccttctgataatagaattatattgtttgaggaacgttttctggaacacgcgagagtatgagggAGTA---ATTCCATC-CAA-AT-TC-ATCATCAGTCATATCCTCCGAATAACAAGT-ATGAAATACACAACACCTCCTTGTTTGCGAG-TTAAACCC-AAAACAGAAGCA------ATCTTTACCG-CAC-A-----TGGCGGAACACGCAATTACTGA--CCTATTGGTGAGCTCAACCTGATTGCTTGTATTAGAAACCTTGTTGTTAA
gi|17 : aggaacatACACCAAATTC-----------TAA-TGCA-TTG---TATCCATA-CGAC-CAGCGTCT--GATGACT--TGGGG---A-A-G-TTGAACAAA
gi|19 : atttgaaaaatgctctctctgttttcagttttagcttttgaatataggattacattgtatgaaaaacgatttcttggatacattgaagggta---T-CGTTCTCCAAAAAA-TGAAGTTTGTAAGACA-A-ATACCCGCAGGAGAAAGTAGAAATG---CCTCCATCTCTG-CT-TCAAACAACAGTCATCAGTGATGGGAAACATAATCTTATGGATACGACag
gi|2 : CGCGTGTAAAGGGCCTGAAAACGAGGATGTTAAGAGGCCTTGTCTTGGGCAAACACCAAAGTC-----CT----TA--TACG-ATA---ATGTCATG-C-ACGCA-T-CTT-------C---TAGGG---A-A-GTT-GAACAAAACACATGCAGTCCCCAAAA-A-TGAAGTATGTGAGACA-ACATACCGTCAAG-----ACAAATGTA---GGTCCATA-CCG-CT-TC-ATTAGCGGTCATTTCTGGTGCGTCACATGA-CTGATGGATGTGACATTCCTTTAGTTA-GAGATTAAAACC-AAAACATGCACA------AAGTTCACCA-CACATACATGTAACACCACACTCAATGAGGGATTCCAAATGGTG-TTATGTCATGA-GGCTGCTATTCAACACTTTGTTGTTAAAAGAAGGCTTCATTGTG---TAGCTCCTGGACACTAAATTCGCT-ATGGACAAAGTACACAAGGTGAAG--T-------ACAGAAACCAAGTAA--TGTATAGAGTGATTACTTTCATTTCCACG------GAT-T-AAACACAGCTATTAGC-------ACA-------------TATTA------AAC----CACGTGATAATCAGGGAAAACAC---A--GTC-ATTACAGAATTCCT--CAAAATCGCTATCTTCTTTCAGACTTACAGTCGCT---TT---ATATGCGTGTTAGAACGGACGCTTGTTCCTCCCATTGTTGAATACGAT
gi|23 : ttgtaaacacctacaaagactacatatctgcgatatagttttaatatcttgataccgttacagaggtaggcttttatcaaactcagaactatactaatttattgtaatgaaccagtcatgactgaaagacaaaagagagtagaaatgtaaa------AGACCCACACCAAAGTC-----CT------A-TGTA-ATT---TATTCATGCC-ACTCACTGTGT--GGTGG-A--TAAGG---A-T-GGTTGAATAAAatc
gi|3 : tatgaagCGCGTGTTAAGTGTCTGAAAACGAGTATGTTAAAAGCCCTTGTCTTAGGCACACACCAAACTC-----CTT-A-TAAATGCA-ACA---TTTTCATG-C-ACGCAGTGCGT--GATGGCG--TAAGG---A-A-ATTTGAATAAAGT---A-CAGTTCCCGCAT-A-TGCGGGTTGTGAGACA-ACATACCGTTAGG-----GCAAAAGTA---CCTCCATC-CTG-CT-TC-ATTACCGGTCATTTCTGATGGGTCACAAGA-TTGATGGATGTGACATTTCTTTTGTTG-AGGATTAAAACC-AAAACACGCACA------ATGTTCACCA-CAC-T-----TAATACCACACTCAATGAGGGATTCCGAATGTTG-TTTTGTCACGA-GACTGTTATTCGACACTTTGTCGTCAAGTGAAGGTTCCATTGTG---TATCGCCTGGACACGACCTCCGCC-ATGGACAAAGTACATAGAATGAAGAACATGAAGAACAAAAAACAACGAA--TGCTTGGAGTGATTATGTTCATTTCATCGGTAAGAGGC-C-AAACACAATTTGCAGC-------ACA-------------CATCA------AGT----CAAGTAAAGATCAAGAAATACTC---C--GTCAACGACAGGCGTCCT--T---TTTTTTATCTTCTGTCGGATATCC---CACTGAATTCCAATA---ATGTT---------GCTCATCCCTCCCATTGGTTAATACGATa
gi|4 : tgCCCACACCAAAGTC-----CT--A-T----GCA-ATT---TATTCATG-C-ACTCACTGTGT--GGTGGCA--TA-GG---A-T-GTT-GAATAAAGA---T-CGTTTCCCAAAA-AATGAAGTTTGTAAGACA-ACATACCCGCAGG--------AAAGTAATGCCTCCATC-CTG-CT-TC-AACAACAGTCATCAGTGATGGGAAACATAA-TCTATGGATACGACACGTATTCAGTTG-AGGATTAAACCC-AAAACATGTACAGCCGGAATGTTCACCA-CAC-T-----GAGCGGAACACTCTGTGAGGGATTCCGAAGGACG-TTTTGTGATGA-TGCTGATATTCGACACCTTGTTGTCAAGTGAAGGTTCCACCATG---AAGCGTTTGGATATTATATCTGCT-TTTGACAAAGTACACAAAATGTAG--TAT-----AC--AAAACAGCGAAATTGC--AGAGTGATGGCTCTCATGCTGCTGGTTAGAGATGTGCAGCACAATTAATAGC-------ACG-------------TATCA------AAT----AAAGTAATGATCAG--AAAACA--G-ACTGTCAGCAACTGGATTACT--C---AATGC---CTGCTGTCTGACTGACAATGGCT---TG---ATATACATG
gi|5 : agacAGATAGACATACCGTCATG-----GCAAAAGTA---CCTCCATC-CTGTCTATC-ATTAACGGTCATGTCTGATGAGTCACATGA-CTGATGAATGCGACATTCCTTCTGTTG-GAG-TGAAAACCAAAAACATGCACA------ACGTTCACCACCAC-T-----GAACACCACACTCAATGGGGGATTCCGAATGGTG-TGTTGTCATCA-GGC-GTTATGTGACAATTTGGTGTCAAGTGAAGATTC--CTGTGCTATAGCGCCTAGATACGACATCTGCCACTGACCAAAGCA-----AATGCGA--CATGGAGAAAAGAAAACAGCAAA--TGCTTAGAGTGGTGATTTTCATTTTGTCGGCAGGAAAT-C-CAGCAAAATTATCAGC-------ATA-------------GGTCA------AAT----CACGTGATGATCAGGAAAAACTCGG-A--GTCA--GACACAAGTCCTTAC---AT-----TCTGCTGTCGAACTTGCAAACGCT---TT---ATATACATGTgctattggtaacaga
gi|6 : tgaatgaagaaaaaaataatcctgaattgaacataaaacaatatacaaacAAAACAAGGTTGTGAAAAGACCT------A----CA-ATCAAAGTC-----CT--G-T----GCA-ATA---TTATCATA-C-ACGCAGTGCATTGGATGGCG---AAGG---ACATGTCTGAACAA
gi|7 : ttataccatgcagagactctattcaatgacatttaattttcattttaatatacacaaatcagggtgtctaaaggggtatattttcaacattcaacccctttatctataaagatttgaaatcgccaccttgttcctagcatgcgatgctcatttataaacgaaaaagaaagaaactcaaatgttgctatctttcgtattagaaacaaatctgtttacatagcattatatatttgaaaatcgcctttgcttcttaaattttagtattgatgtaggttataatttttgggggaaattcactaggcatcacacAAAACAAGGTTGTGAAAAGACCT------A----CA-ATCAAAGTC-----CT--G-T----GCA-ATA---TTATCATA-C-ACGCAGTGCATTGGATGGCG---AAGG---ACATGTCTGAACAA
gi|8 : ttataccatgcagagactctattcaatgacatttaattttcattttaatatacacaaatcagggtgtctaaaggggtatattttcaacattcaacccctttatctataaagatttgaaatcgccaccttgttcctagcatgcgatgctcatttataaacgaaaaagaaagaaactcaaatgttgctatctttcgtattagaaacaaatctgtttacatagcattatatatttgaaaatcgcctttgcttcttaaattttagtattgatgtaggttataatttttgggggaaattcactaggcatcacacAAAACAAGGTTGT--GAAGA----------GGCCCACACCACAGTC-----CT--A-CA----CA-ATG---TATTCATG-C-ACCCAATGTGT--GATGAC---TAAGAC--A-A-G-CTGAATAA
9 sequences could not be aligned to this reference sequence:
Unaligned ( gi|9 ): TGAATATGTAGTTAATACTATATACAGAAACTCAAAGTGTGTTATTTAGAACCTCAACCCCTCTAATCAGCAATGAATTTCGTCCTAAATGGGATCAGTATGCAATGTGGCAATAAAACTTAGGTGACATATTTTTCCTGTCATTTTGGTAAACGAAAATATCTATTTATTATCGCCCATCACTTGGAAATAAGCTTTCTTTAGTTTAAATTTTAACTTTATGAATACAGGGGTATATTGTTTGGAGAACGATCCATTGATACGTTAAATTGCATCAAACCAAACCAAGGTTGTTTGGATAGGCCAATAAACAATGGACATATACTAATGCACATAGTGTGTAATAGGTTAATGAAATTCAACAAAAA
Unaligned ( gi|14 ): TATAATGCTCATATTTGCAATTTTTTTGTTTTAAATCTCAGCTTTTGAATATAGAACTGCATTGTTTTTTGGGGGGTTTTTTGTTTTGTATTTTGGGTTTTTTTTTGGGGGGGGGGGGAATGTTTTGCTAAACGAAACGAGGATATGAAGAGGCCGACGTCCTTTATTCAAATATGTATT
Unaligned ( gi|15 ): CTTTTCCTATCATTTTGTAAAACGGACATATCTGTTGATTTGTAACTCTATTTGTTTTTAATTTTAACTTCTGAGTACATGTTTGTTTTGTTTGCAGATCATTTTCAAATAAATCGAAGCTGTGAAGGAATCAGCACCGAAGTCCTAAAGTTTACAATGCATGTATATCCAA
Unaligned ( gi|16 ): TAGGCTTCGTTGGTTTGAATTTTAGCTTTTCAATATAGGATTACATTATTTGGAGACCGTTTTATGGGTTATGTGTTAAATCAAATAAAACTCGAGGATATGGAGGGACCCACACTAAATACTAGTAGTCGTCTGCGCAGTGCATGATGACCATGGGAAGTTCAATACCGT
Unaligned ( gi|18 ): AGATTGCATAAATATGTAATGGTACCCAAAAGTTGAAACAGGCTCTCTTTGTTTTAAATTTTAACTGTTAAATATAGGTCTGTATTGTTTTGAGAACGTTTCCTTAGACGTGCGCTATTTCAAATGCAACGAGGATATGGGCCCACTCCG
Unaligned ( gi|20 ): TATGTAGATTTGGTTTAATTAATGTTTACCTATTCAGAAACTCGGGTGTGTATACCTTAACTTTCTATTCCTCTTATCAGCAATGAATTTGTCCATATAATTCCAAGTTTA
Unaligned ( gi|21 ): CTTAGCTTTTGAAAAAAAGTTTATACCGTTTGGAGAACGGTATCTGGCATATAGATTCATTTCAAACAACTGTAGACACCCACATCAAAATCTCTGCGCATAGTA
Unaligned ( gi|22 ): TAACTAATCAGAACACAGACTGTTGGTAATTGGGTTAATCACTTGGCTACCTGCTTAACTGGCATCAGATAACAGACTATTGTA
Unaligned ( gi|24 ): CCCTTCTAATTAACAATGAACTCATCCATAT
Alignments
lowQualScore : 555555555555 33333333 11111 111111111 1111 222222 111 111111 22222222 111 66666666666 11 111 44444444444444444444444 222222 1111 11 3333 4444444444444 111 11111
lowQualScore : 1 4 000000000000 3 88888 55555555 6 555 1 6 3 1 99 55555 111111111 3 0 7777 1 1 8 8 0 6 111111 000 5 5 5 5 1 1 1 0 0 5 1 6 7 1 6 999999 1 6 00000000 0 3 6 0 6 1 1 4 444 99 1 1 11111111111 0 3 11 8 1 7777 333 1 88888888888888888888888 333333 7777 0 11 4444 7777 0 1111111111111 0 444 66 0 22222 0 0
lowQualScore : . . ............ . ..... ........ . ... . . . . .. ..... ......... . . .... . . . . . . ...... ... . . . . . . . . . . . . . . . ...... . . ........ . . . . . . . . ... .. . . ........... . . .. . . .... ... . ....................... ...... .... . .. .... .... . ............. . ... .. . ..... . .
lowQualScore : 0 9 888888888888 6 33333 77777777 7 888 0 7 3 8 22 44444 777777777 2 8 0000 0 0 0 0 6 7 888888 000 7 7 7 7 9 0 0 4 7 7 0 7 3 5 7 222222 0 7 22222222 7 2 7 7 7 0 4 6 000 00 4 0 00000000000 8 2 00 8 0 2222 000 0 22222222222222222222222 000000 0000 8 00 6666 4444 6 2222222222222 6 000 00 8 77777 7 7
consensus : NNCGCGTGTTAAGTGTCTGAAAACGAGGNTGTTAAAAGACCT------AGGCCCACACCAAAGTC-----CT--A-TAA-TGCA-ATA---TNTTCATG-C-ACGCAGTGCGT--GATGGCG--TAAGG---A-A-GTTTGAACAAAG----TTCGNTCCCCAAAA-A-TGAAGTTTGTGAGACA-ACATACCGTCAGG-----GCAAAAGTA---CCTCCATC-CTG-CT-TC-ATCANCGGTCATNTCTGATGGGTCACATGA-CTGATGGATGCGACATTTCTTTNGTTG-GAGATTAAAACC-AAAACATGCACA------ANGTTCACCA-CAC-T-----TAACGCCACACTCAATGAGGGATTCCGAATGGTG-TTTTGTCACGA-GGCTGNTATTCGACACTTTGTTGTCAAGTGAAGGTTCCACCGTG---TAGCGCCTGGATACGACATCCGCC-NTGGACAAAGTACACAGAATGAAG--TAT-G-AGAACAGAAAACAGCGAA--TGCNTAGAGTGATNATTTTCATTTCGTCGGTNGGAGAT-T-CAACACAATTANTAGC-------ACA-------------TATCA------AAT----CACGTGATGATCAGGAA--AAACTC-G-AGTCAACGACAGAATTCCT--C---ATCGCTATCTTCTGTCGGA---CTTACAGNCGCTTTATATACGTGTTAGAACGGACGCTCGTTCCTCCCATCGTTGAATACGAT
Reference ( family-946 ) : NNCGCGTGTTAAGTGTCTGAAAACGAGGNTGTTAAAAGACCT------AGGCCCACACCAAAGTC-----CT--A-TAA-TGCA-ATA---TNTTCATG-C-ACGCAGTGCGT--GATGGCG--TAAGG---A-A-GTTTGAACAAAG----TTCGNTCCCCAAAA-A-TGAAGTTTGTGAGACA-ACATACCGTCAGG-----GCAAAAGTA---CCTCCATC-CTG-CT-TC-ATCANCGGTCATNTCTGATGGGTCACATGA-CTGATGGATGCGACATTTCTTTNGTTG-GAGATTAAAACC-AAAACATGCACA------ANGTTCACCA-CAC-T-----TAACGCCACACTCAATGAGGGATTCCGAATGGTG-TTTTGTCACGA-GGCTGNTATTCGACACTTTGTTGTCAAGTGAAGGTTCCACCGTG---TAGCGCCTGGATACGACATCCGCC-NTGGACAAAGTACACAGAATGAAG--TAT-G-AGAACAGAAAACAGCGAA--TGCNTAGAGTGATNATTTTCATTTCGTCGGTNGGAGAT-T-CAACACAATTANTAGC-------ACA-------------TATCA------AAT----CACGTGATGATCAGGAA--AAACTC-G-AGTCAACGACAGAATTCCT--C---ATCGCTATCTTCTGTCGGA---CTTACAGNCGCTTTATATACGTGTTAGAACGGACGCTCGTTCCTCCCATCGTTGAATACGAT
gi|1 : GCCTGTTAATTGTCTGCAAACGATGATGTTAAGAAGCC---------GC-------------------------AA-TGCT-ATA---TTTTCAT--C-TCGCAGTTTGT--GATGATG--TAAAGGCAA-A-GAT---ACAAAA----TTCAATCCC--ATA-A-TAAAGGTCTAGAAAAA-ACATACCGTCAGG-----TTTAAAGTA---CCTCCATC-CTG-CT-TC-AGTAGCGGTCAGTTCTGATGAGTCACATGA-CTGGTGAATGTGACATTTCTTTAGCTG-GAGATTAAAGCC-AAAAAATGTACA------AAGTTCACCA-CAC-T-----CAATACCACATTCTATGAGGGAGTCCGAATGGTG-CTTTGTCACGA-GGCTGTTATTCGACACTTTGTTGTCAAGAGAAGGATCCACAGTG---TAGTGCCTGGATACGACATCTGCC-TTAGACAAAGTACACAGGGTGAAG--T--------GCAGAAAACCGCTTA--TGTATAGAGTGATCCTTTTCATTTCGTCGATTGAAGAC-T-CAACACAGTTACTAGCTCGAAAAACAGTTATGGTACAGTTATTATTTAAGAATAAATCACGTGATGA-CAGGAA--GAACTC-GTGGTCAATAACAGAATTCCT--C---A---CTATCTTCTGTCGGA---TTTACAGGCGCTTTATATACGTGTTAAAATGGACGCTTGCTCCTCCCACCGTTGAATGCGAT
gi|10 : taccatgcatcatctttatttgaaaatctgactggttaatagaaggtctgtactattgcatgatggctgccaaaggcgctatttactgcaatgatgaccccgaatcactgcctatactataaacacaatattgacatgtaggttttattacatgtaatgattgcttaaatttgaccacttacaaattcattagaaataacattgcatatgatgattattatgtcaagagtcgtagactaatggaagaaaacacccttgttatgcagaaactgcatcattattgatgtacccagttgtgtcttgtatcaatccatattctagacaactacaaagatcacattactcggatacaattgtaatatctagatatagttacagagacatattttgatcggacttagaagtttactaaattattgtgatgaaccagtcttatatatctaagacaagaagagagtggaaatctaaatACCGAAGTC-----CT--AATAAATGCA-ATA---TATCCATG-C-ACACAG-------AATGGTG--AAATG---A-A-GTTTAGACAatc
gi|11 : atttactttaactttccaatcagcaatgaactacgtgtaatttatacagtgcctagcatgcaatgctcgtttacaaatatataagaatatataagaaaaaaactcatgtgaatatcttgtgaaagatgtttaaacagtgataatttgaaatatgctctctttgttataaattttgccctcttagtttggaattatattgcttggagaacgaatttttgggacatgcgatatttcaaacaaaacgaggAACGAGGATGCTAACAGACC------------CAAACGGAAGTCATTTACTTAA-TGA-TACATGTA---TATTCGTG-C-GCGCAGAGCGT--GATGG-----AATT---A-A-G-TTGAA-AAAG----
gi|12 : cgtttcctatcattttatgaaacgagaacacatcagtctatatagtgctgatattctttaagctttaaaatgtatgaagaacgttttctgggacatacattatttcaaatgGGCCTACACCAAAGTC-----CT--T-TAC-TATATATATTTTGTTTACGAG-ATGC-GTGCGC--GGTGGCATTTAAGG---A-A-G-TTGAATAAAagt
gi|13 : aaatgtttgatatttatagtgctcaatatttgaaataagctttctgtcttaaaatataccttctgataatagaattatattgtttgaggaacgttttctggaacacgcgagagtatgagggAGTA---ATTCCATC-CAA-AT-TC-ATCATCAGTCATATCCTCCGAATAACAAGT-ATGAAATACACAACACCTCCTTGTTTGCGAG-TTAAACCC-AAAACAGAAGCA------ATCTTTACCG-CAC-A-----TGGCGGAACACGCAATTACTGA--CCTATTGGTGAGCTCAACCTGATTGCTTGTATTAGAAACCTTGTTGTTAA
gi|17 : aggaacatACACCAAATTC-----------TAA-TGCA-TTG---TATCCATA-CGAC-CAGCGTCT--GATGACT--TGGGG---A-A-G-TTGAACAAA
gi|19 : atttgaaaaatgctctctctgttttcagttttagcttttgaatataggattacattgtatgaaaaacgatttcttggatacattgaagggtaTCGTTCTCCAAAAAA-TGAAGTTTGTAAGACA-A-ATACCCGCAGGAGAAAGTAGAAATG---CCTCCATCTCTG-CT-TCAAACAACAGTCATCAGTGATGGGAAACATAATCTTATGGATACGACag
gi|2 : CGCGTGTAAAGGGCCTGAAAACGAGGATGTTAAGAGGCCTTGTCTTGGGCAAACACCAAAGTC-----CT----TA--TACG-ATA---ATGTCATG-C-ACGCA-T-CTT-------C---TAGGG---A-A-GTT-GAACAAAACACATGCAGTCCCCAAAA-A-TGAAGTATGTGAGACA-ACATACCGTCAAG-----ACAAATGTA---GGTCCATA-CCG-CT-TC-ATTAGCGGTCATTTCTGGTGCGTCACATGA-CTGATGGATGTGACATTCCTTTAGTTA-GAGATTAAAACC-AAAACATGCACA------AAGTTCACCA-CACATACATGTAACACCACACTCAATGAGGGATTCCAAATGGTG-TTATGTCATGA-GGCTGCTATTCAACACTTTGTTGTTAAAAGAAGGCTTCATTGTG---TAGCTCCTGGACACTAAATTCGCT-ATGGACAAAGTACACAAGGTGAAG--T--------ACAGAAACCAAGTAA--TGTATAGAGTGATTACTTTCATTTCCACG------GAT-T-AAACACAGCTATTAGC-------ACA-------------TATTA------AAC----CACGTGATAATCAGGGA--AAACAC---AGTC-ATTACAGAATTCCT--CAAAATCGCTATCTTCTTTCAGA---CTTACAGTCGCTTTATATGCGTGTTAGAACGGACGCTTGTTCCTCCCATTGTTGAATACGAT
gi|23 : ttgtaaacacctacaaagactacatatctgcgatatagttttaatatcttgataccgttacagaggtaggcttttatcaaactcagaactatactaatttattgtaatgaaccagtcatgactgaaagacaaaagagagtagaaatgtaaa------AGACCCACACCAAAGTC-----CT------A-TGTA-ATT---TATTCATGCC-ACTCACTGTGT--GGTGG-A--TAAGG---A-T-GGTTGAATAAAatc
gi|3 : tatgaagCGCGTGTTAAGTGTCTGAAAACGAGTATGTTAAAAGCCCTTGTCTTAGGCACACACCAAACTC-----CTT-A-TAAATGCA-ACA---TTTTCATG-C-ACGCAGTGCGT--GATGGCG--TAAGG---A-A-ATTTGAATAAAG----TACAGTTCCCGCAT-A-TGCGGGTTGTGAGACA-ACATACCGTTAGG-----GCAAAAGTA---CCTCCATC-CTG-CT-TC-ATTACCGGTCATTTCTGATGGGTCACAAGA-TTGATGGATGTGACATTTCTTTTGTTG-AGGATTAAAACC-AAAACACGCACA------ATGTTCACCA-CAC-T-----TAATACCACACTCAATGAGGGATTCCGAATGTTG-TTTTGTCACGA-GACTGTTATTCGACACTTTGTCGTCAAGTGAAGGTTCCATTGTG---TATCGCCTGGACACGACCTCCGCC-ATGGACAAAGTACATAGAATGAAGAACAT-GAAGAACAAAAAACAACGAA--TGCTTGGAGTGATTATGTTCATTTCATCGGTAAGAGGC-C-AAACACAATTTGCAGC-------ACA-------------CATCA------AGT----CAAGTAAAGATCAAGAA--ATACTC---CGTCAACGACAGGCGTCCT--T---TTTTTTATCTTCTGTCGGATATCCCACTGA-ATTCCA-ATA-ATGTT---------GCTCATCCCTCCCATTGGTTAATACGATa
gi|4 : tgCCCACACCAAAGTC-----CT--A-T----GCA-ATT---TATTCATG-C-ACTCACTGTGT--GGTGGCA--TA-GG---A-T-GTT-GAATAAAG----ATCGTTTCCCAAAA-AATGAAGTTTGTAAGACA-ACATACCCGCAGG--------AAAGTAATGCCTCCATC-CTG-CT-TC-AACAACAGTCATCAGTGATGGGAAACATAA-TCTATGGATACGACACGTATTCAGTTG-AGGATTAAACCC-AAAACATGTACAGCCGGAATGTTCACCA-CAC-T-----GAGCGGAACACTCTGTGAGGGATTCCGAAGGACG-TTTTGTGATGA-TGCTGATATTCGACACCTTGTTGTCAAGTGAAGGTTCCACCATG---AAGCGTTTGGATATTATATCTGCT-TTTGACAAAGTACACAAAATGTAG--TAT------AC--AAAACAGCGAAATTGC--AGAGTGATGGCTCTCATGCTGCTGGTTAGAGATGTGCAGCACAATTAATAGC-------ACG-------------TATCA------AAT----AAAGTAATGATCAGAAAACAGACT-----GTCAGCAACTGGATTACT--C---AATGC---CTGCTGTCTGA---CTGACAATGGCTTGATATACATG
gi|5 : agacAGATAGACATACCGTCATG-----GCAAAAGTA---CCTCCATC-CTGTCTATC-ATTAACGGTCATGTCTGATGAGTCACATGA-CTGATGAATGCGACATTCCTTCTGTTG-GAG-TGAAAACCAAAAACATGCACA------ACGTTCACCACCAC-T-----GAACACCACACTCAATGGGGGATTCCGAATGGTG-TGTTGTCATCA-GGC-GTTATGTGACAATTTGGTGTCAAGTGAAGATTC--CTGTGCTATAGCGCCTAGATACGACATCTGCCACTGACCAAAGCA-----AATGCGA--CATGG-AGAAAAGAAAACAGCAAA--TGCTTAGAGTGGTGATTTTCATTTTGTCGGCAGGAAAT-C-CAGCAAAATTATCAGC-------ATA-------------GGTCA------AAT----CACGTGATGATCAGGAA--AAACTCGG-AGTCA--GACACAAGTCCTTAC---AT-----TCTGCTGTCGAA---CTTGCAAACGCTTTATATACATGTgctattggtaacaga
gi|6 : tgaatgaagaaaaaaataatcctgaattgaacataaaacaatatacaaacAAAACAAGGTTGTGAAAAGACCT------A----CA-ATCAAAGTC-----CT--G-T----GCA-ATA---TTATCATA-C-ACGCAGTGCATTGGATGGCG---AAGG---ACATGTCTGAACAA
gi|7 : ttataccatgcagagactctattcaatgacatttaattttcattttaatatacacaaatcagggtgtctaaaggggtatattttcaacattcaacccctttatctataaagatttgaaatcgccaccttgttcctagcatgcgatgctcatttataaacgaaaaagaaagaaactcaaatgttgctatctttcgtattagaaacaaatctgtttacatagcattatatatttgaaaatcgcctttgcttcttaaattttagtattgatgtaggttataatttttgggggaaattcactaggcatcacacAAAACAAGGTTGTGAAAAGACCT------A----CA-ATCAAAGTC-----CT--G-T----GCA-ATA---TTATCATA-C-ACGCAGTGCATTGGATGGCG---AAGG---ACATGTCTGAACAA
gi|8 : ttataccatgcagagactctattcaatgacatttaattttcattttaatatacacaaatcagggtgtctaaaggggtatattttcaacattcaacccctttatctataaagatttgaaatcgccaccttgttcctagcatgcgatgctcatttataaacgaaaaagaaagaaactcaaatgttgctatctttcgtattagaaacaaatctgtttacatagcattatatatttgaaaatcgcctttgcttcttaaattttagtattgatgtaggttataatttttgggggaaattcactaggcatcacacAAAACAAGGTTGT--GAAGA----------GGCCCACACCACAGTC-----CT--A-CA----CA-ATG---TATTCATG-C-ACCCAATGTGT--GATGAC---TAAGAC--A-A-G-CTGAATAA
9 sequences could not be aligned to this reference sequence:
Unaligned ( gi|9 ): TGAATATGTAGTTAATACTATATACAGAAACTCAAAGTGTGTTATTTAGAACCTCAACCCCTCTAATCAGCAATGAATTTCGTCCTAAATGGGATCAGTATGCAATGTGGCAATAAAACTTAGGTGACATATTTTTCCTGTCATTTTGGTAAACGAAAATATCTATTTATTATCGCCCATCACTTGGAAATAAGCTTTCTTTAGTTTAAATTTTAACTTTATGAATACAGGGGTATATTGTTTGGAGAACGATCCATTGATACGTTAAATTGCATCAAACCAAACCAAGGTTGTTTGGATAGGCCAATAAACAATGGACATATACTAATGCACATAGTGTGTAATAGGTTAATGAAATTCAACAAAAA
Unaligned ( gi|14 ): TATAATGCTCATATTTGCAATTTTTTTGTTTTAAATCTCAGCTTTTGAATATAGAACTGCATTGTTTTTTGGGGGGTTTTTTGTTTTGTATTTTGGGTTTTTTTTTGGGGGGGGGGGGAATGTTTTGCTAAACGAAACGAGGATATGAAGAGGCCGACGTCCTTTATTCAAATATGTATT
Unaligned ( gi|15 ): CTTTTCCTATCATTTTGTAAAACGGACATATCTGTTGATTTGTAACTCTATTTGTTTTTAATTTTAACTTCTGAGTACATGTTTGTTTTGTTTGCAGATCATTTTCAAATAAATCGAAGCTGTGAAGGAATCAGCACCGAAGTCCTAAAGTTTACAATGCATGTATATCCAA
Unaligned ( gi|16 ): TAGGCTTCGTTGGTTTGAATTTTAGCTTTTCAATATAGGATTACATTATTTGGAGACCGTTTTATGGGTTATGTGTTAAATCAAATAAAACTCGAGGATATGGAGGGACCCACACTAAATACTAGTAGTCGTCTGCGCAGTGCATGATGACCATGGGAAGTTCAATACCGT
Unaligned ( gi|18 ): AGATTGCATAAATATGTAATGGTACCCAAAAGTTGAAACAGGCTCTCTTTGTTTTAAATTTTAACTGTTAAATATAGGTCTGTATTGTTTTGAGAACGTTTCCTTAGACGTGCGCTATTTCAAATGCAACGAGGATATGGGCCCACTCCG
Unaligned ( gi|20 ): TATGTAGATTTGGTTTAATTAATGTTTACCTATTCAGAAACTCGGGTGTGTATACCTTAACTTTCTATTCCTCTTATCAGCAATGAATTTGTCCATATAATTCCAAGTTTA
Unaligned ( gi|21 ): CTTAGCTTTTGAAAAAAAGTTTATACCGTTTGGAGAACGGTATCTGGCATATAGATTCATTTCAAACAACTGTAGACACCCACATCAAAATCTCTGCGCATAGTA
Unaligned ( gi|22 ): TAACTAATCAGAACACAGACTGTTGGTAATTGGGTTAATCACTTGGCTACCTGCTTAACTGGCATCAGATAACAGACTATTGTA
Unaligned ( gi|24 ): CCCTTCTAATTAACAATGAACTCATCCATAT
Alignments
lowQualScore : 555555555555 33333333 11111 111111111 1111 222222 111 111111 22222222 111 66666666666 11 111 44444444444444444444444 222222 1111 11 3333 4444444444444 111 11111
lowQualScore : 1 4 000000000000 3 88888 55555555 6 555 1 6 3 1 99 55555 111111111 3 0 7777 1 1 8 8 0 6 111111 000 5 5 5 5 1 1 1 0 0 5 1 6 7 1 6 999999 1 6 00000000 0 3 6 0 6 1 1 4 444 99 1 1 11111111111 0 3 11 8 1 7777 333 1 88888888888888888888888 333333 7777 0 11 4444 7777 0 1111111111111 0 444 66 0 22222 0 0
lowQualScore : . . ............ . ..... ........ . ... . . . . .. ..... ......... . . .... . . . . . . ...... ... . . . . . . . . . . . . . . . ...... . . ........ . . . . . . . . ... .. . . ........... . . .. . . .... ... . ....................... ...... .... . .. .... .... . ............. . ... .. . ..... . .
lowQualScore : 0 9 888888888888 6 33333 77777777 7 888 0 7 3 8 22 44444 777777777 2 8 0000 0 0 0 0 6 7 888888 000 7 7 7 7 9 0 0 4 7 7 0 7 3 5 7 222222 0 7 22222222 7 2 7 7 7 0 4 6 000 00 4 0 00000000000 8 2 00 8 0 2222 000 0 22222222222222222222222 000000 0000 8 00 6666 4444 6 2222222222222 6 000 00 8 77777 7 7
consensus : NNCGCGTGTTAAGTGTCTGAAAACGAGGNTGTTAAAAGACCT------AGGCCCACACCAAAGTC-----CT--A-TAA-TGCA-ATA---TNTTCATG-C-ACGCAGTGCGT--GATGGCG--TAAGG---A-A-GTTTGAACAAAG----TTCGNTCCCCAAAA-A-TGAAGTTTGTGAGACA-ACATACCGTCAGG-----GCAAAAGTA---CCTCCATC-CTG-CT-TC-ATCANCGGTCATNTCTGATGGGTCACATGA-CTGATGGATGCGACATTTCTTTNGTTG-GAGATTAAAACC-AAAACATGCACA------ANGTTCACCA-CAC-T-----TAACGCCACACTCAATGAGGGATTCCGAATGGTG-TTTTGTCACGA-GGCTGNTATTCGACACTTTGTTGTCAAGTGAAGGTTCCACCGTG---TAGCGCCTGGATACGACATCCGCC-NTGGACAAAGTACACAGAATGAAG--TAT-G-AGAACAGAAAACAGCGAA--TGCNTAGAGTGATNATTTTCATTTCGTCGGTNGGAGAT-T-CAACACAATTANTAGC-------ACA-------------TATCA------AAT----CACGTGATGATCAGGAA--AAACTC-G-AGTCAACGACAGAATTCCT--C---ATCGCTATCTTCTGTCGGA---CTTACAGNCGCTTTATATACGTGTTAGAACGGACGCTCGTTCCTCCCATCGTTGAATACGAT
Reference ( family-946 ) : NNCGCGTGTTAAGTGTCTGAAAACGAGGNTGTTAAAAGACCT------AGGCCCACACCAAAGTC-----CT--A-TAA-TGCA-ATA---TNTTCATG-C-ACGCAGTGCGT--GATGGCG--TAAGG---A-A-GTTTGAACAAAG----TTCGNTCCCCAAAA-A-TGAAGTTTGTGAGACA-ACATACCGTCAGG-----GCAAAAGTA---CCTCCATC-CTG-CT-TC-ATCANCGGTCATNTCTGATGGGTCACATGA-CTGATGGATGCGACATTTCTTTNGTTG-GAGATTAAAACC-AAAACATGCACA------ANGTTCACCA-CAC-T-----TAACGCCACACTCAATGAGGGATTCCGAATGGTG-TTTTGTCACGA-GGCTGNTATTCGACACTTTGTTGTCAAGTGAAGGTTCCACCGTG---TAGCGCCTGGATACGACATCCGCC-NTGGACAAAGTACACAGAATGAAG--TAT-G-AGAACAGAAAACAGCGAA--TGCNTAGAGTGATNATTTTCATTTCGTCGGTNGGAGAT-T-CAACACAATTANTAGC-------ACA-------------TATCA------AAT----CACGTGATGATCAGGAA--AAACTC-G-AGTCAACGACAGAATTCCT--C---ATCGCTATCTTCTGTCGGA---CTTACAGNCGCTTTATATACGTGTTAGAACGGACGCTCGTTCCTCCCATCGTTGAATACGAT
gi|1 : GCCTGTTAATTGTCTGCAAACGATGATGTTAAGAAGCC---------GC-------------------------AA-TGCT-ATA---TTTTCAT--C-TCGCAGTTTGT--GATGATG--TAAAGGCAA-A-GAT---ACAAAA----TTCAATCCC--ATA-A-TAAAGGTCTAGAAAAA-ACATACCGTCAGG-----TTTAAAGTA---CCTCCATC-CTG-CT-TC-AGTAGCGGTCAGTTCTGATGAGTCACATGA-CTGGTGAATGTGACATTTCTTTAGCTG-GAGATTAAAGCC-AAAAAATGTACA------AAGTTCACCA-CAC-T-----CAATACCACATTCTATGAGGGAGTCCGAATGGTG-CTTTGTCACGA-GGCTGTTATTCGACACTTTGTTGTCAAGAGAAGGATCCACAGTG---TAGTGCCTGGATACGACATCTGCC-TTAGACAAAGTACACAGGGTGAAG--T--------GCAGAAAACCGCTTA--TGTATAGAGTGATCCTTTTCATTTCGTCGATTGAAGAC-T-CAACACAGTTACTAGCTCGAAAAACAGTTATGGTACAGTTATTATTTAAGAATAAATCACGTGATGA-CAGGAA--GAACTC-GTGGTCAATAACAGAATTCCT--C---A---CTATCTTCTGTCGGA---TTTACAGGCGCTTTATATACGTGTTAAAATGGACGCTTGCTCCTCCCACCGTTGAATGCGAT
gi|10 : taccatgcatcatctttatttgaaaatctgactggttaatagaaggtctgtactattgcatgatggctgccaaaggcgctatttactgcaatgatgaccccgaatcactgcctatactataaacacaatattgacatgtaggttttattacatgtaatgattgcttaaatttgaccacttacaaattcattagaaataacattgcatatgatgattattatgtcaagagtcgtagactaatggaagaaaacacccttgttatgcagaaactgcatcattattgatgtacccagttgtgtcttgtatcaatccatattctagacaactacaaagatcacattactcggatacaattgtaatatctagatatagttacagagacatattttgatcggacttagaagtttactaaattattgtgatgaaccagtcttatatatctaagacaagaagagagtggaaatctaaatACCGAAGTC-----CT--AATAAATGCA-ATA---TATCCATG-C-ACACAG-------AATGGTG--AAATG---A-A-GTTTAGACAatc
gi|11 : atttactttaactttccaatcagcaatgaactacgtgtaatttatacagtgcctagcatgcaatgctcgtttacaaatatataagaatatataagaaaaaaactcatgtgaatatcttgtgaaagatgtttaaacagtgataatttgaaatatgctctctttgttataaattttgccctcttagtttggaattatattgcttggagaacgaatttttgggacatgcgatatttcaaacaaaacgaggAACGAGGATGCTAACAGACC------------CAAACGGAAGTCATTTACTTAA-TGA-TACATGTA---TATTCGTG-C-GCGCAGAGCGT--GATGG-----AATT---A-A-G-TTGAA-AAAG----
gi|12 : cgtttcctatcattttatgaaacgagaacacatcagtctatatagtgctgatattctttaagctttaaaatgtatgaagaacgttttctgggacatacattatttcaaatgGGCCTACACCAAAGTC-----CT--T-TAC-TATATATATTTTGTTTACGAG-ATGC-GTGCGC--GGTGGCATTTAAGG---A-A-G-TTGAATAAAagt
gi|13 : aaatgtttgatatttatagtgctcaatatttgaaataagctttctgtcttaaaatataccttctgataatagaattatattgtttgaggaacgttttctggaacacgcgagagtatgagggAGTA---ATTCCATC-CAA-AT-TC-ATCATCAGTCATATCCTCCGAATAACAAGT-ATGAAATACACAACACCTCCTTGTTTGCGAG-TTAAACCC-AAAACAGAAGCA------ATCTTTACCG-CAC-A-----TGGCGGAACACGCAATTACTGA--CCTATTGGTGAGCTCAACCTGATTGCTTGTATTAGAAACCTTGTTGTTAA
gi|17 : aggaacatACACCAAATTC-----------TAA-TGCA-TTG---TATCCATA-CGAC-CAGCGTCT--GATGACT--TGGGG---A-A-G-TTGAACAAA
gi|19 : atttgaaaaatgctctctctgttttcagttttagcttttgaatataggattacattgtatgaaaaacgatttcttggatacattgaagggtaTCGTTCTCCAAAAAA-TGAAGTTTGTAAGACA-A-ATACCCGCAGGAGAAAGTAGAAATG---CCTCCATCTCTG-CT-TCAAACAACAGTCATCAGTGATGGGAAACATAATCTTATGGATACGACag
gi|2 : CGCGTGTAAAGGGCCTGAAAACGAGGATGTTAAGAGGCCTTGTCTTGGGCAAACACCAAAGTC-----CT----TA--TACG-ATA---ATGTCATG-C-ACGCA-T-CTT-------C---TAGGG---A-A-GTT-GAACAAAACACATGCAGTCCCCAAAA-A-TGAAGTATGTGAGACA-ACATACCGTCAAG-----ACAAATGTA---GGTCCATA-CCG-CT-TC-ATTAGCGGTCATTTCTGGTGCGTCACATGA-CTGATGGATGTGACATTCCTTTAGTTA-GAGATTAAAACC-AAAACATGCACA------AAGTTCACCA-CACATACATGTAACACCACACTCAATGAGGGATTCCAAATGGTG-TTATGTCATGA-GGCTGCTATTCAACACTTTGTTGTTAAAAGAAGGCTTCATTGTG---TAGCTCCTGGACACTAAATTCGCT-ATGGACAAAGTACACAAGGTGAAG--T--------ACAGAAACCAAGTAA--TGTATAGAGTGATTACTTTCATTTCCACG------GAT-T-AAACACAGCTATTAGC-------ACA-------------TATTA------AAC----CACGTGATAATCAGGGA--AAACAC---AGTC-ATTACAGAATTCCT--CAAAATCGCTATCTTCTTTCAGA---CTTACAGTCGCTTTATATGCGTGTTAGAACGGACGCTTGTTCCTCCCATTGTTGAATACGAT
gi|23 : ttgtaaacacctacaaagactacatatctgcgatatagttttaatatcttgataccgttacagaggtaggcttttatcaaactcagaactatactaatttattgtaatgaaccagtcatgactgaaagacaaaagagagtagaaatgtaaa------AGACCCACACCAAAGTC-----CT------A-TGTA-ATT---TATTCATGCC-ACTCACTGTGT--GGTGG-A--TAAGG---A-T-GGTTGAATAAAatc
gi|3 : tatgaagCGCGTGTTAAGTGTCTGAAAACGAGTATGTTAAAAGCCCTTGTCTTAGGCACACACCAAACTC-----CTT-A-TAAATGCA-ACA---TTTTCATG-C-ACGCAGTGCGT--GATGGCG--TAAGG---A-A-ATTTGAATAAAG----TACAGTTCCCGCAT-A-TGCGGGTTGTGAGACA-ACATACCGTTAGG-----GCAAAAGTA---CCTCCATC-CTG-CT-TC-ATTACCGGTCATTTCTGATGGGTCACAAGA-TTGATGGATGTGACATTTCTTTTGTTG-AGGATTAAAACC-AAAACACGCACA------ATGTTCACCA-CAC-T-----TAATACCACACTCAATGAGGGATTCCGAATGTTG-TTTTGTCACGA-GACTGTTATTCGACACTTTGTCGTCAAGTGAAGGTTCCATTGTG---TATCGCCTGGACACGACCTCCGCC-ATGGACAAAGTACATAGAATGAAGAACAT-GAAGAACAAAAAACAACGAA--TGCTTGGAGTGATTATGTTCATTTCATCGGTAAGAGGC-C-AAACACAATTTGCAGC-------ACA-------------CATCA------AGT----CAAGTAAAGATCAAGAA--ATACTC---CGTCAACGACAGGCGTCCT--T---TTTTTTATCTTCTGTCGGATATCCCACTGA-ATTCCA-ATA-ATGTT---------GCTCATCCCTCCCATTGGTTAATACGATa
gi|4 : tgCCCACACCAAAGTC-----CT--A-T----GCA-ATT---TATTCATG-C-ACTCACTGTGT--GGTGGCA--TA-GG---A-T-GTT-GAATAAAG----ATCGTTTCCCAAAA-AATGAAGTTTGTAAGACA-ACATACCCGCAGG--------AAAGTAATGCCTCCATC-CTG-CT-TC-AACAACAGTCATCAGTGATGGGAAACATAA-TCTATGGATACGACACGTATTCAGTTG-AGGATTAAACCC-AAAACATGTACAGCCGGAATGTTCACCA-CAC-T-----GAGCGGAACACTCTGTGAGGGATTCCGAAGGACG-TTTTGTGATGA-TGCTGATATTCGACACCTTGTTGTCAAGTGAAGGTTCCACCATG---AAGCGTTTGGATATTATATCTGCT-TTTGACAAAGTACACAAAATGTAG--TAT------AC--AAAACAGCGAAATTGC--AGAGTGATGGCTCTCATGCTGCTGGTTAGAGATGTGCAGCACAATTAATAGC-------ACG-------------TATCA------AAT----AAAGTAATGATCAGAAAACAGACT-----GTCAGCAACTGGATTACT--C---AATGC---CTGCTGTCTGA---CTGACAATGGCTTGATATACATG
gi|5 : agacAGATAGACATACCGTCATG-----GCAAAAGTA---CCTCCATC-CTGTCTATC-ATTAACGGTCATGTCTGATGAGTCACATGA-CTGATGAATGCGACATTCCTTCTGTTG-GAG-TGAAAACCAAAAACATGCACA------ACGTTCACCACCAC-T-----GAACACCACACTCAATGGGGGATTCCGAATGGTG-TGTTGTCATCA-GGC-GTTATGTGACAATTTGGTGTCAAGTGAAGATTC--CTGTGCTATAGCGCCTAGATACGACATCTGCCACTGACCAAAGCA-----AATGCGA--CATGG-AGAAAAGAAAACAGCAAA--TGCTTAGAGTGGTGATTTTCATTTTGTCGGCAGGAAAT-C-CAGCAAAATTATCAGC-------ATA-------------GGTCA------AAT----CACGTGATGATCAGGAA--AAACTCGG-AGTCA--GACACAAGTCCTTAC---AT-----TCTGCTGTCGAA---CTTGCAAACGCTTTATATACATGTgctattggtaacaga
gi|6 : tgaatgaagaaaaaaataatcctgaattgaacataaaacaatatacaaacAAAACAAGGTTGTGAAAAGACCT------A----CA-ATCAAAGTC-----CT--G-T----GCA-ATA---TTATCATA-C-ACGCAGTGCATTGGATGGCG---AAGG---ACATGTCTGAACAA
gi|7 : ttataccatgcagagactctattcaatgacatttaattttcattttaatatacacaaatcagggtgtctaaaggggtatattttcaacattcaacccctttatctataaagatttgaaatcgccaccttgttcctagcatgcgatgctcatttataaacgaaaaagaaagaaactcaaatgttgctatctttcgtattagaaacaaatctgtttacatagcattatatatttgaaaatcgcctttgcttcttaaattttagtattgatgtaggttataatttttgggggaaattcactaggcatcacacAAAACAAGGTTGTGAAAAGACCT------A----CA-ATCAAAGTC-----CT--G-T----GCA-ATA---TTATCATA-C-ACGCAGTGCATTGGATGGCG---AAGG---ACATGTCTGAACAA
gi|8 : ttataccatgcagagactctattcaatgacatttaattttcattttaatatacacaaatcagggtgtctaaaggggtatattttcaacattcaacccctttatctataaagatttgaaatcgccaccttgttcctagcatgcgatgctcatttataaacgaaaaagaaagaaactcaaatgttgctatctttcgtattagaaacaaatctgtttacatagcattatatatttgaaaatcgcctttgcttcttaaattttagtattgatgtaggttataatttttgggggaaattcactaggcatcacacAAAACAAGGTTGT--GAAGA----------GGCCCACACCACAGTC-----CT--A-CA----CA-ATG---TATTCATG-C-ACCCAATGTGT--GATGAC---TAAGAC--A-A-G-CTGAATAA
blockSeqs : A T TTGTCTTGGGCA A ATTTA AATAAA T TTT A A G A TG CATTT ACATGT T CACA T T A A G AGAAAG ATG T T A A T T A T G C A C A GCCGGA T C ATACATGT T A T G A T CTA AC A A AACATGAAGA T AT A T GTAA GTG T ACA . . AC GGA AACG CAAAATCGCTA TAT TC AGAAC
blockSeqs : A T TTGTCTTAGGCA C . TAATGA T . A C . G TG TGA ACATGT T . G G . . . A . . . . . A A C . A . A A . . A . AT T . . C T T . A G A CATGGAGA G . T T GTTA T G ACA . . . A AGCA TTTTTTTA . TG .
blockSeqs : A T GGCC C . TATAAA . . G . . G . CTT AAGT T . A G . . . G . . . . . T G T . T . A A . . T . TT T . . T T C . A A T TAT G . T G GCAG C A ACG . . . C ATT CAATGC . AC
blockSeqs : T G TA C . TTAC . . A . . G . CGT AAGT T . T T . . . G . . . . . T C T . A . . C . . T . TG T . . A T T . T . C T A . . G . C T ATA . . . . AG TACAT . A
blockSeqs : T G TA C . TAA . . T . . T . CAT ATGG T . . . . . . . A A C . T . . A . . C . TG . . . T
blockSeqs : T . . C . ACA . . A . . G . CT AAAT T . . . . . T A G .
blockSeqs : C . TA . . T . . T . AT ATGT T
blockSeqs : C . AT . . A . . G . CG CAAG T
blockSeqs : . . GT . . T . . G . CG AAG T
blockSeqs : . . GT . . T . . C . CT AAG .
blockSeqs : . A . . A . . . . . AAG .
blockSeqCons : CGT** AAGT***** TAT******** ACA******************** ****** **** **** TAATCTA******
originalCons : NNCGCGTGTTAAGTGTCTGAAAACGAGGNTGTTAAAAGACCT------AGGCCCACACCAAAGTC-----CT--A-TAA-TGCA-ATA---TNTTCATG-C-ACGCAGTGCGT--GATGGCG--TAAGG---A-A-GTTTGAACAAAG----TTCGNTCCCCAAAA-A-TGAAGTTTGTGAGACA-ACATACCGTCAGG-----GCAAAAGTA---CCTCCATC-CTG-CT-TC-ATCANCGGTCATNTCTGATGGGTCACATGA-CTGATGGATGCGACATTTCTTTNGTTG-GAGATTAAAACC-AAAACATGCACA------ANGTTCACCA-CAC-T-----TAACGCCACACTCAATGAGGGATTCCGAATGGTG-TTTTGTCACGA-GGCTGNTATTCGACACTTTGTTGTCAAGTGAAGGTTCCACCGTG---TAGCGCCTGGATACGACATCCGCC-NTGGACAAAGTACACAGAATGAAG--TAT-G-AGAACAGAAAACAGCGAA--TGCNTAGAGTGATNATTTTCATTTCGTCGGTNGGAGAT-T-CAACACAATTANTAGC-------ACA-------------TATCA------AAT----CACGTGATGATCAGGAA--AAACTC-G-AGTCAACGACAGAATTCCT--C---ATCGCTATCTTCTGTCGGA---CTTACAGNCGCTTTATATACGTGTTAGAACGGACGCTCGTTCCTCCCATCGTTGAATACGAT
finalCons : NNCGCGTGTTAAGTGTCTGAAAACGAGGNTGTTAAAAGACCT------AGGCCCACACCAAAGTC-----CT--A-TAA-TGCA-ATA---TNTTCATG-C-ACGCAGTGCGT--GATGGCGT--AAGGAAGT-----TTGAACAAAG----TTCGNTCCCCAAAA-A-TGAAGTTTGTGAGACA-ACATACCGTCAGG-----GCAAAAGTA---CCTCCATC-CTG-CT-TC-ATCANCGGTCATNTCTGATGGGTCACATGA-CTGATGGATGCGACATTTCTTTNGTTG-GAGATTAAAACC-AAAACATGCACA------ANGTTCACCA-CAC-T-----TAACGCCACACTCAATGAGGGATTCCGAATGGTG-TTTTGTCACGA-GGCTGNTATTCGACACTTTGTTGTCAAGTGAAGGTTCCACCGTG---TAGCGCCTGGATACGACATCCGCC-NTGGACAAAGTACACAGAATGAAGTAT--------ACAGAAAACAGCGAA--TGCNTAGAGTGATNATTTTCATTTCGTCGGTNGGAGAT-T-CAACACAATTANTAGCACA--------------------TATCA------AAT----CACGTGATGATCAGGAA--AAACTC----GTCAACGACAGAATTCCTTAATCTA------TCTTCTGTCGGA---CTTACAGNCGCTTTATATACGTGTTAGAACGGACGCTCGTTCCTCCCATCGTTGAATACGAT
9 sequences could not be aligned to this reference sequence:
Unaligned ( gi|9 ): TGAATATGTAGTTAATACTATATACAGAAACTCAAAGTGTGTTATTTAGAACCTCAACCCCTCTAATCAGCAATGAATTTCGTCCTAAATGGGATCAGTATGCAATGTGGCAATAAAACTTAGGTGACATATTTTTCCTGTCATTTTGGTAAACGAAAATATCTATTTATTATCGCCCATCACTTGGAAATAAGCTTTCTTTAGTTTAAATTTTAACTTTATGAATACAGGGGTATATTGTTTGGAGAACGATCCATTGATACGTTAAATTGCATCAAACCAAACCAAGGTTGTTTGGATAGGCCAATAAACAATGGACATATACTAATGCACATAGTGTGTAATAGGTTAATGAAATTCAACAAAAA
Unaligned ( gi|14 ): TATAATGCTCATATTTGCAATTTTTTTGTTTTAAATCTCAGCTTTTGAATATAGAACTGCATTGTTTTTTGGGGGGTTTTTTGTTTTGTATTTTGGGTTTTTTTTTGGGGGGGGGGGGAATGTTTTGCTAAACGAAACGAGGATATGAAGAGGCCGACGTCCTTTATTCAAATATGTATT
Unaligned ( gi|15 ): CTTTTCCTATCATTTTGTAAAACGGACATATCTGTTGATTTGTAACTCTATTTGTTTTTAATTTTAACTTCTGAGTACATGTTTGTTTTGTTTGCAGATCATTTTCAAATAAATCGAAGCTGTGAAGGAATCAGCACCGAAGTCCTAAAGTTTACAATGCATGTATATCCAA
Unaligned ( gi|16 ): TAGGCTTCGTTGGTTTGAATTTTAGCTTTTCAATATAGGATTACATTATTTGGAGACCGTTTTATGGGTTATGTGTTAAATCAAATAAAACTCGAGGATATGGAGGGACCCACACTAAATACTAGTAGTCGTCTGCGCAGTGCATGATGACCATGGGAAGTTCAATACCGT
Unaligned ( gi|18 ): AGATTGCATAAATATGTAATGGTACCCAAAAGTTGAAACAGGCTCTCTTTGTTTTAAATTTTAACTGTTAAATATAGGTCTGTATTGTTTTGAGAACGTTTCCTTAGACGTGCGCTATTTCAAATGCAACGAGGATATGGGCCCACTCCG
Unaligned ( gi|20 ): TATGTAGATTTGGTTTAATTAATGTTTACCTATTCAGAAACTCGGGTGTGTATACCTTAACTTTCTATTCCTCTTATCAGCAATGAATTTGTCCATATAATTCCAAGTTTA
Unaligned ( gi|21 ): CTTAGCTTTTGAAAAAAAGTTTATACCGTTTGGAGAACGGTATCTGGCATATAGATTCATTTCAAACAACTGTAGACACCCACATCAAAATCTCTGCGCATAGTA
Unaligned ( gi|22 ): TAACTAATCAGAACACAGACTGTTGGTAATTGGGTTAATCACTTGGCTACCTGCTTAACTGGCATCAGATAACAGACTATTGTA
Unaligned ( gi|24 ): CCCTTCTAATTAACAATGAACTCATCCATAT
Alignments
lowQualScore : 555555555555 33333333 11111 111111111 1111 222222 111 111111 22222222 111 5555555555 11 111 44444444444444444444444 222222 1111 11 44444 444444444 111 11111
lowQualScore : 1 4 000000000000 3 88888 55555555 6 555 1 6 3 1 99 55555 111111111 3 0 7777 1 1 8 8 0 6 111111 000 5 5 5 5 1 1 1 0 0 5 1 6 7 1 6 999999 1 6 00000000 0 3 6 0 6 1 1 666 444 1 3 8 9999 5555555555 0 3 11 8 1 7777 333 1 88888888888888888888888 333333 7777 0 11 44444 7777 8 666666666 0 444 66 0 22222 0 0
lowQualScore : . . ............ . ..... ........ . ... . . . . .. ..... ......... . . .... . . . . . . ...... ... . . . . . . . . . . . . . . . ...... . . ........ . . . . . . . ... ... . . . .... .......... . . .. . . .... ... . ....................... ...... .... . .. ..... .... . ......... . ... .. . ..... . .
lowQualScore : 0 9 888888888888 6 33333 77777777 7 888 0 7 3 8 22 44444 777777777 2 8 0000 0 0 0 0 6 7 888888 000 7 7 7 7 9 0 0 4 7 7 0 7 3 5 7 222222 0 7 22222222 7 2 7 7 7 0 4 888 000 0 2 0 4444 8888888888 8 2 00 8 0 2222 000 0 22222222222222222222222 000000 0000 8 00 00000 4444 0 000000000 6 000 00 8 77777 7 7
consensus : NNCGCGTGTTAAGTGTCTGAAAACGAGGNTGTTAAAAGACCT------AGGCCCACACCAAAGTC-----CT--A-TAA-TGCA-ATA---TNTTCATG-C-ACGCAGTGCGT--GATGGCG--TAAGG---A-A-GTTTGAACAAAG----TTCGNTCCCCAAAA-A-TGAAGTTTGTGAGACA-ACATACCGTCAGG-----GCAAAAGTA---CCTCCATC-CTG-CT-TC-ATCANCGGTCATNTCTGATGGGTCACATGA-CTGATGGATGCGACATTTCTTTNGTTG-GAGATTAAAACCAAAA-CATGCACA------ANGTTCACCAC-AC-T-----TAACGCCACACTCAATGAGGGATTCCGAATGGTG-TTTTGTCACGA-GGCTGNTATTCGACACTTTGTTGTCAAGTGAAGGTTCCACCGTG---TAGCGCCTGGATACGACATCCGCCATNGAC-AAAGTACACA-GA-ATGAAG---AT-----ACAGAAAACAGCGAA--TGCNTAGAGTGATNATTTTCATTTCGTCGGTNGGAGAT-T-CAACACAATTANTAGC-------ACA-------------TATCA------AAT----CACGTGATGATCAGGAA--AAACT-CG--GTCAACGACAGA-ATTCCTC--A-AT--CTATCTTCTGTCGGA---CTTACAGNCGCTTTATATACGTGTTAGAACGGACGCTCGTTCCTCCCATCGTTGAATACGAT
Reference ( family-946 ) : NNCGCGTGTTAAGTGTCTGAAAACGAGGNTGTTAAAAGACCT------AGGCCCACACCAAAGTC-----CT--A-TAA-TGCA-ATA---TNTTCATG-C-ACGCAGTGCGT--GATGGCG--TAAGG---A-A-GTTTGAACAAAG----TTCGNTCCCCAAAA-A-TGAAGTTTGTGAGACA-ACATACCGTCAGG-----GCAAAAGTA---CCTCCATC-CTG-CT-TC-ATCANCGGTCATNTCTGATGGGTCACATGA-CTGATGGATGCGACATTTCTTTNGTTG-GAGATTAAAACCAAAA-CATGCACA------ANGTTCACCAC-AC-T-----TAACGCCACACTCAATGAGGGATTCCGAATGGTG-TTTTGTCACGA-GGCTGNTATTCGACACTTTGTTGTCAAGTGAAGGTTCCACCGTG---TAGCGCCTGGATACGACATCCGCCNTGGAC-AAAGTACACA-GA-ATGAAG--TAT-----ACAGAAAACAGCGAA--TGCNTAGAGTGATNATTTTCATTTCGTCGGTNGGAGAT-T-CAACACAATTANTAGC-------ACA-------------TATCA------AAT----CACGTGATGATCAGGAA--AAACT-C---GTCAACGACAGA-ATTCCTT--A-AT--CTATCTTCTGTCGGA---CTTACAGNCGCTTTATATACGTGTTAGAACGGACGCTCGTTCCTCCCATCGTTGAATACGAT
gi|1 : GCCTGTTAATTGTCTGCAAACGATGATGTTAAGAAGCC---------GC-------------------------AA-TGCT-ATA---TTTTCAT--C-TCGCAGTTTGT--GATGATG--TAAAGGCAA-A-GAT---ACAAAA----TTCAATCCC--ATA-A-TAAAGGTCTAGAAAAA-ACATACCGTCAGG-----TTTAAAGTA---CCTCCATC-CTG-CT-TC-AGTAGCGGTCAGTTCTGATGAGTCACATGA-CTGGTGAATGTGACATTTCTTTAGCTG-GAGATTAAAGCCAAAA-AATGTACA------AAGTTCACCAC-AC-T-----CAATACCACATTCTATGAGGGAGTCCGAATGGTG-CTTTGTCACGA-GGCTGTTATTCGACACTTTGTTGTCAAGAGAAGGATCCACAGTG---TAGTGCCTGGATACGACATCTGCCTTAGAC-AAAGTACACA-GG-GTGAAG----T-----GCAGAAAACCGCTTA--TGTATAGAGTGATCCTTTTCATTTCGTCGATTGAAGAC-T-CAACACAGTTACTAGCTCGAAAAACAGTTATGGTACAGTTATTATTTAAGAATAAATCACGTGATGA-CAGGAA--GAACT-CGTGGTCAATAACAGA-ATTCCTC--A-----CTATCTTCTGTCGGA---TTTACAGGCGCTTTATATACGTGTTAAAATGGACGCTTGCTCCTCCCACCGTTGAATGCGAT
gi|10 : taccatgcatcatctttatttgaaaatctgactggttaatagaaggtctgtactattgcatgatggctgccaaaggcgctatttactgcaatgatgaccccgaatcactgcctatactataaacacaatattgacatgtaggttttattacatgtaatgattgcttaaatttgaccacttacaaattcattagaaataacattgcatatgatgattattatgtcaagagtcgtagactaatggaagaaaacacccttgttatgcagaaactgcatcattattgatgtacccagttgtgtcttgtatcaatccatattctagacaactacaaagatcacattactcggatacaattgtaatatctagatatagttacagagacatattttgatcggacttagaagtttactaaattattgtgatgaaccagtcttatatatctaagacaagaagagagtggaaatctaaatACCGAAGTC-----CT--AATAAATGCA-ATA---TATCCATG-C-ACACAG-------AATGGTG--AAATG---A-A-GTTTAGACAatc
gi|11 : atttactttaactttccaatcagcaatgaactacgtgtaatttatacagtgcctagcatgcaatgctcgtttacaaatatataagaatatataagaaaaaaactcatgtgaatatcttgtgaaagatgtttaaacagtgataatttgaaatatgctctctttgttataaattttgccctcttagtttggaattatattgcttggagaacgaatttttgggacatgcgatatttcaaacaaaacgaggAACGAGGATGCTAACAGACC------------CAAACGGAAGTCATTTACTTAA-TGA-TACATGTA---TATTCGTG-C-GCGCAGAGCGT--GATGG-----AATT---A-A-G-TTGAA-AAAG----
gi|12 : cgtttcctatcattttatgaaacgagaacacatcagtctatatagtgctgatattctttaagctttaaaatgtatgaagaacgttttctgggacatacattatttcaaatgGGCCTACACCAAAGTC-----CT--T-TAC-TATATATATTTTGTTTACGAG-ATGC-GTGCGC--GGTGGCATTTAAGG---A-A-G-TTGAATAAAagt
gi|13 : aaatgtttgatatttatagtgctcaatatttgaaataagctttctgtcttaaaatataccttctgataatagaattatattgtttgaggaacgttttctggaacacgcgagagtatgagggAGTA---ATTCCATC-CAA-AT-TC-ATCATCAGTCATATCCTCCGAATAACAAGT-ATGAAATACACAACACCTCCTTGTTTGCGAG-TTAAACCCAAAA-CAGAAGCA------ATCTTTACCGC-AC-A-----TGGCGGAACACGCAATTACTGA--CCTATTGGTGAGCTCAACCTGATTGCTTGTATTAGAAACCTTGTTGTTAA
gi|17 : aggaacatACACCAAATTC-----------TAA-TGCA-TTG---TATCCATA-CGAC-CAGCGTCT--GATGACT--TGGGG---A-A-G-TTGAACAAA
gi|19 : atttgaaaaatgctctctctgttttcagttttagcttttgaatataggattacattgtatgaaaaacgatttcttggatacattgaagggtaTCGTTCTCCAAAAAA-TGAAGTTTGTAAGACA-A-ATACCCGCAGGAGAAAGTAGAAATG---CCTCCATCTCTG-CT-TCAAACAACAGTCATCAGTGATGGGAAACATAATCTTATGGATACGACag
gi|2 : CGCGTGTAAAGGGCCTGAAAACGAGGATGTTAAGAGGCCTTGTCTTGGGCAAACACCAAAGTC-----CT----TA--TACG-ATA---ATGTCATG-C-ACGCA-T-CTT-------C---TAGGG---A-A-GTT-GAACAAAACACATGCAGTCCCCAAAA-A-TGAAGTATGTGAGACA-ACATACCGTCAAG-----ACAAATGTA---GGTCCATA-CCG-CT-TC-ATTAGCGGTCATTTCTGGTGCGTCACATGA-CTGATGGATGTGACATTCCTTTAGTTA-GAGATTAAAACCAAAA-CATGCACA------AAGTTCACCAC-ACATACATGTAACACCACACTCAATGAGGGATTCCAAATGGTG-TTATGTCATGA-GGCTGCTATTCAACACTTTGTTGTTAAAAGAAGGCTTCATTGTG---TAGCTCCTGGACACTAAATTCGCTATGGAC-AAAGTACACA-AG-GTGAAG----T-----ACAGAAACCAAGTAA--TGTATAGAGTGATTACTTTCATTTCCACG------GAT-T-AAACACAGCTATTAGC-------ACA-------------TATTA------AAC----CACGTGATAATCAGGGA--AAACA-CA--GTC-ATTACAGA-ATTCCTCAAA-ATCGCTATCTTCTTTCAGA---CTTACAGTCGCTTTATATGCGTGTTAGAACGGACGCTTGTTCCTCCCATTGTTGAATACGAT
gi|23 : ttgtaaacacctacaaagactacatatctgcgatatagttttaatatcttgataccgttacagaggtaggcttttatcaaactcagaactatactaatttattgtaatgaaccagtcatgactgaaagacaaaagagagtagaaatgtaaa------AGACCCACACCAAAGTC-----CT------A-TGTA-ATT---TATTCATGCC-ACTCACTGTGT--GGTGG-A--TAAGG---A-T-GGTTGAATAAAatc
gi|3 : tatgaagCGCGTGTTAAGTGTCTGAAAACGAGTATGTTAAAAGCCCTTGTCTTAGGCACACACCAAACTC-----CTT-A-TAAATGCA-ACA---TTTTCATG-C-ACGCAGTGCGT--GATGGCG--TAAGG---A-A-ATTTGAATAAAG----TACAGTTCCCGCAT-A-TGCGGGTTGTGAGACA-ACATACCGTTAGG-----GCAAAAGTA---CCTCCATC-CTG-CT-TC-ATTACCGGTCATTTCTGATGGGTCACAAGA-TTGATGGATGTGACATTTCTTTTGTTG-AGGATTAAAACCAAAA-CACGCACA------ATGTTCACCAC-AC-T-----TAATACCACACTCAATGAGGGATTCCGAATGTTG-TTTTGTCACGA-GACTGTTATTCGACACTTTGTCGTCAAGTGAAGGTTCCATTGTG---TATCGCCTGGACACGACCTCCGCCATGGAC-AAAGTACATA-GA-ATGAAGAACATGAAGAACAAAAAACAACGAA--TGCTTGGAGTGATTATGTTCATTTCATCGGTAAGAGGC-C-AAACACAATTTGCAGC-------ACA-------------CATCA------AGT----CAAGTAAAGATCAAGAA--ATACTCC---GTCAACGACAGGCGTCCTTT--T-TT--TTATCTTCTGTCGGATATCCCACTGA-ATTCCA-ATA-ATGTT---------GCTCATCCCTCCCATTGGTTAATACGATa
gi|4 : tgCCCACACCAAAGTC-----CT--A-T----GCA-ATT---TATTCATG-C-ACTCACTGTGT--GGTGGCA--TA-GG---A-T-GTT-GAATAAAG----ATCGTTTCCCAAAA-AATGAAGTTTGTAAGACA-ACATACCCGCAGG--------AAAGTAATGCCTCCATC-CTG-CT-TC-AACAACAGTCATCAGTGATGGGAAACATAA-TCTATGGATACGACACGTATTCAGTTG-AGGATTAAACCCAAAA-CATGTACAGCCGGAATGTTCACCAC-AC-T-----GAGCGGAACACTCTGTGAGGGATTCCGAAGGACG-TTTTGTGATGA-TGCTGATATTCGACACCTTGTTGTCAAGTGAAGGTTCCACCATG---AAGCGTTTGGATATTATATCTGCTTTTGAC-AAAGTACACA-AA-ATGTAG--TAT-----AC--AAAACAGCGAAATTGC--AGAGTGATGGCTCTCATGCTGCTGGTTAGAGATGTGCAGCACAATTAATAGC-------ACG-------------TATCA------AAT----AAAGTAATGATCAGAAAACAGACT-----GTCAGCAACTGG-ATTACTC--A-A----TGCCTGCTGTCTGA---CTGACAATGGCTTGATATACATG
gi|5 : agacAGATAGACATACCGTCATG-----GCAAAAGTA---CCTCCATC-CTGTCTATC-ATTAACGGTCATGTCTGATGAGTCACATGA-CTGATGAATGCGACATTCCTTCTGTTG-GAG-TGAAAACCAAAAACATGCACA------ACGTTCACCACCAC-T-----GAACACCACACTCAATGGGGGATTCCGAATGGTG-TGTTGTCATCA-GGC-GTTATGTGACAATTTGGTGTCAAGTGAAGATTCC--TGTGCTATAGCGCCTAGATACGACATCTGCCACTGACCAAAGCAAATGCGACATGGAG---A------AAAGAAAACAGCAAA--TGCTTAGAGTGGTGATTTTCATTTTGTCGGCAGGAAAT-C-CAGCAAAATTATCAGC-------ATA-------------GGTCA------AAT----CACGTGATGATCAGGAA--AAACT-CGGAGTCA--GACACA-AGTCCTT--ACAT-----TCTGCTGTCGAA---CTTGCAAACGCTTTATATACATGTgctattggtaacaga
gi|6 : tgaatgaagaaaaaaataatcctgaattgaacataaaacaatatacaaacAAAACAAGGTTGTGAAAAGACCT------A----CA-ATCAAAGTC-----CT--G-T----GCA-ATA---TTATCATA-C-ACGCAGTGCATTGGATGGCG---AAGG---ACATGTCTGAACAA
gi|7 : ttataccatgcagagactctattcaatgacatttaattttcattttaatatacacaaatcagggtgtctaaaggggtatattttcaacattcaacccctttatctataaagatttgaaatcgccaccttgttcctagcatgcgatgctcatttataaacgaaaaagaaagaaactcaaatgttgctatctttcgtattagaaacaaatctgtttacatagcattatatatttgaaaatcgcctttgcttcttaaattttagtattgatgtaggttataatttttgggggaaattcactaggcatcacacAAAACAAGGTTGTGAAAAGACCT------A----CA-ATCAAAGTC-----CT--G-T----GCA-ATA---TTATCATA-C-ACGCAGTGCATTGGATGGCG---AAGG---ACATGTCTGAACAA
gi|8 : ttataccatgcagagactctattcaatgacatttaattttcattttaatatacacaaatcagggtgtctaaaggggtatattttcaacattcaacccctttatctataaagatttgaaatcgccaccttgttcctagcatgcgatgctcatttataaacgaaaaagaaagaaactcaaatgttgctatctttcgtattagaaacaaatctgtttacatagcattatatatttgaaaatcgcctttgcttcttaaattttagtattgatgtaggttataatttttgggggaaattcactaggcatcacacAAAACAAGGTTGT--GAAGA----------GGCCCACACCACAGTC-----CT--A-CA----CA-ATG---TATTCATG-C-ACCCAATGTGT--GATGAC---TAAGAC--A-A-G-CTGAATAA
9 sequences could not be aligned to this reference sequence:
Unaligned ( gi|9 ): TGAATATGTAGTTAATACTATATACAGAAACTCAAAGTGTGTTATTTAGAACCTCAACCCCTCTAATCAGCAATGAATTTCGTCCTAAATGGGATCAGTATGCAATGTGGCAATAAAACTTAGGTGACATATTTTTCCTGTCATTTTGGTAAACGAAAATATCTATTTATTATCGCCCATCACTTGGAAATAAGCTTTCTTTAGTTTAAATTTTAACTTTATGAATACAGGGGTATATTGTTTGGAGAACGATCCATTGATACGTTAAATTGCATCAAACCAAACCAAGGTTGTTTGGATAGGCCAATAAACAATGGACATATACTAATGCACATAGTGTGTAATAGGTTAATGAAATTCAACAAAAA
Unaligned ( gi|14 ): TATAATGCTCATATTTGCAATTTTTTTGTTTTAAATCTCAGCTTTTGAATATAGAACTGCATTGTTTTTTGGGGGGTTTTTTGTTTTGTATTTTGGGTTTTTTTTTGGGGGGGGGGGGAATGTTTTGCTAAACGAAACGAGGATATGAAGAGGCCGACGTCCTTTATTCAAATATGTATT
Unaligned ( gi|15 ): CTTTTCCTATCATTTTGTAAAACGGACATATCTGTTGATTTGTAACTCTATTTGTTTTTAATTTTAACTTCTGAGTACATGTTTGTTTTGTTTGCAGATCATTTTCAAATAAATCGAAGCTGTGAAGGAATCAGCACCGAAGTCCTAAAGTTTACAATGCATGTATATCCAA
Unaligned ( gi|16 ): TAGGCTTCGTTGGTTTGAATTTTAGCTTTTCAATATAGGATTACATTATTTGGAGACCGTTTTATGGGTTATGTGTTAAATCAAATAAAACTCGAGGATATGGAGGGACCCACACTAAATACTAGTAGTCGTCTGCGCAGTGCATGATGACCATGGGAAGTTCAATACCGT
Unaligned ( gi|18 ): AGATTGCATAAATATGTAATGGTACCCAAAAGTTGAAACAGGCTCTCTTTGTTTTAAATTTTAACTGTTAAATATAGGTCTGTATTGTTTTGAGAACGTTTCCTTAGACGTGCGCTATTTCAAATGCAACGAGGATATGGGCCCACTCCG
Unaligned ( gi|20 ): TATGTAGATTTGGTTTAATTAATGTTTACCTATTCAGAAACTCGGGTGTGTATACCTTAACTTTCTATTCCTCTTATCAGCAATGAATTTGTCCATATAATTCCAAGTTTA
Unaligned ( gi|21 ): CTTAGCTTTTGAAAAAAAGTTTATACCGTTTGGAGAACGGTATCTGGCATATAGATTCATTTCAAACAACTGTAGACACCCACATCAAAATCTCTGCGCATAGTA
Unaligned ( gi|22 ): TAACTAATCAGAACACAGACTGTTGGTAATTGGGTTAATCACTTGGCTACCTGCTTAACTGGCATCAGATAACAGACTATTGTA
Unaligned ( gi|24 ): CCCTTCTAATTAACAATGAACTCATCCATAT