lowQualScore : 11 1 22222 11 111 1 22222 1111111 999999999999999999999999999999999999999999999 1111 22 1 1 1 22 11 1 111 11111 11 1 1 1 2222 111 1 1 111 222222 11 11 11
lowQualScore : 33 0 2 55555 99 6 5 000 1 55555 8888888 5 77 555555555555555555555555555555555555555555555 5 2222 5 33 6 99 1 5 1 6 0 2 6 77 33 0 2 333 11111 3 0 33 0 3 0 0 1111 2 3 3 8 444 5 3 5 0 3 0 111 6 9999 6 6 0 0 88 333333 0 8 8 2 11 0 8 0 0 8 8 8 0 8 55 1 66 3 777 6 5 11
lowQualScore : .. . . ..... .. . . ... . ..... ....... . .. ............................................. . .... . .. . .. . . . . . . . .. .. . . ... ..... . . .. . . . . .... . . . . ... . . . . . . ... . .... . . . . .. ...... . . . . .. . . . . . . . . . .. . .. . ... . . ..
lowQualScore : 88 0 5 00000 88 7 7 000 9 99999 6666666 7 99 111111111111111111111111111111111111111111111 7 1111 7 00 7 22 4 7 7 7 7 1 5 55 88 0 5 555 00000 2 2 88 0 2 0 0 2222 2 2 2 0 000 0 2 0 6 2 7 777 0 3333 7 7 3 8 88 000000 8 0 0 2 00 8 0 8 8 0 0 0 8 0 00 7 33 2 555 7 6 00
consensus : GGTCGTGTCTGTACT--TTT-AAAANTTTA-----AAGAATT-AT-GA-A---GCTCGTGCTAGTC---GTAGA-------GCACGGTT-C--GAAGAGA-------------C-----------TCGGG------TGAA-----TAA-ATACAGGTA----TCGAGGGG-TACCTTGAAGGGTGTACGACTAGAGAGGTCCT-ATACAGGAT--AACTGAAACATACTATAT-ACAAACATGT-AACACTGTCAATGTGACANTCATGTG--C-TACATATTTCTNA-TTCAA-TATTTGATCAACTAGTGCTT--CCT-AGAATAACTATGCTG-GTGTGG-CACAAT----TGAGAGTGTCACTGAAACCACAGAAACATTCCTCTAATTTCTGGTT-CAGT---ATTGGCCTGTTTCTTCTTAAATCTACCGCTTTTGTACATTCTCAACTCATTTTTCTCC---TTTGGCGCCTCCATT--T-C-TGTTTA-CATCAACAACACTAT-ACTCTACG------TACCTTCATT-TACAGAAGATCAC-ACAATCACC--TAAAAACCTAAATT-CTGATAAAACG-TACTTTCGGGT-ATTTTTGGA-TAA-TTTTCTTT-AGGAGTTATCTC-G-CTTA-TCAGAGGG--TCGAAATTCCTT
Reference ( gi|2 ) : GGTCGTGTCTGTACT--TTT-AAAACTTTA-----AAGAATA-AT-GA-A---GCTCTTGCTAGTT---TTAGA-------GCACGGTT-C--GAAGAGA-------------C-----------TCGGG------TGAA-----TAA-ATACAGGTA----TCGAGGGG-TACCCAGAAGGGTGTACGACTAGAGAGGTCCT-ATACAGGAT--AACTGAAACATACTATAT-ACAGACATGT-AACACTGTCAATATGACAGTC--GTG--C-TACATATTTCTCA-TTCAA-TATTTGATCAACTAGTGCTT--CCT-AGAATAACTATGCTG-GTGTGG-CACAAT----TGAAAGTGTCACTGAAACCACAGAAACATTCCTCTAATTTCTGGTT-CAGT---ATTGGCCTGTTTCTTCTTAAATCTCCCGCTTTTCTACATTCTCAACTCATTTTCCTCC---TTTAGCGCCTCCATT--T-C-TGTTTA-CATCAACAACACTAT-ACTCTACG------TACCTTCATT-TACAGAAGATCAC-ACAATCATC--TAAAAACCTAAATT-CTGATAAAACG-TACTTTCGGGT-ATTTTTGGA-TAA-TTTTCTTA-AGGAGTTATCTC-G-CTTA-TCAGAGGG--TCGAAATTCCTT
gi|9 : GGTCGTGTCTGTACT--TTT-AAAAATGTA-----AAGAATT-AT-GA-A---GCTCGTGCTAGTG---T-AGA-------GCACGGTT-C--GAAGAGA-------------C-----------TCAGG------TGAA-----TAA-ATACAGGTA----TCGAGGGG-TACCTTGAAGGGTGTACGACTCGAGAGGTCCT-ATACAGGAT--AACTGAAACATACTATAT-ACAAACACGT-AACACTGTCAATGTGA
gi|8 : TGTTTGTACA--TTT-AAAACTTTA-----AAGAATT-AT-GA-A---GCTCATGGTAGCT---GTAGA-------GCACGGTT-C--GAAGAGAGTGAAACCCTAAAC-----------TAATG------TGAA-----TAA-ATACAGGTA----CCGAGGGG-TACTTTCAAGGGTGTACGACTAGAGAGGTCCT-ATACAGGAT--AACTGAAACATACTATAT-ACAAACATGT-AGCACTGCAAATGTGA
gi|15 : TGTCTGTACT--TTTTAAAACTTTA-----AAGAATT-CT-GA-A---GCTCGTGCTAGTT---GTAGG-------GCGCGGTT-C--GAAAAG--------------------------------------------------ATAGAGGTA----TCGAGGGG-TA
gi|1 : TCTGTACTATTCT-AAATATTTATGTGAAGGAATTTAT-AG-ATATGCTCTGGCT-GTCCACTCAGATAAGATGGCACGGTT-CTGAAAGAGA-------------TCTGCGAGGAATTCAGG------TGAA-----TAA-ATACAGGTA----TCGAGGGG-TATCTTGAAGGGTGTACGACTCGAGAGGTCCT-ATACAGGAT--AACTGAAACATACTATAT-ACAAACATGT-AACACTGTCAATGTGACAGTCATGTG--C-TACATATTT----------------GATC---------TT--CCTGAGAATAACTATGCTG-GTGTGG-CACAGTAAGTTGAAAGTGTCACTGAAATCATAGAAACATTCCTCTAATTTCTGGTT-CAGT---ATTAGCTTGTTTCTTTTTAAATCTACCGCTTTTGTACATTTTAAACACCTTTTTCTCC---TTTGGCGTCGCCATT--T-C-TGTAGA-CACCAACAACACTAT-GGTCTGCG------TACCTTCATT-TACAAAAGATCAC-ATAATCACC--TAAAAACCTAAATT-CTGATAAAACG-TACTTTTGGGT-ATTTTTGGA-TAA-TTTTCTTT-AGG--------------TA-TCAGAGGG--CCGAAATTCCTT
gi|6 : aagtccttcAATA-ATTGATA---GC-CGTGCTAATC---A-AGA-------ACACGGTTTC--GAAGAGA-------------G-----------TCGATAACCCCTAAACTCAGTAATATACAG-TACAAATCGAGGGGGTACCTTGAAGG-TGTACGAATAGAGAGGTCCTAACACGCGATCAAACTAAAAC-TACTATATAACA-ACA-GTAAACACTGT-AAT-TGAC
gi|11 : tctgttcacaatttaaacttgacaaatgccga-GA-A---GCTCGTGCTAGTT---GTAGG-------GCACGGTT-C--GAAGAGA--------------------------------------------------TACAGGTA----TCGAAGGG-TACCTTGAATCGTGTACGACTAGAGAGGTCCT-ATTGAGGAT--AACTGAAACATACTATAT-ACAAAC
gi|3 : -A---GCTCGTGCTAGTT---ATAGA-------GCACGGTT-C--GAAGATA-------------C-----------TCGGG------TGAA-----TAA-ATACATGTA----TCGAGGGG-TACCTTGAAGGGTGTGCGATTAGAAAGGCCCT-ATAAAGGAT--AACTCAAACATACTATATAACA-ACATGT-AAC---GTCA----------T--GTG--CTTACATATTTCTCA-TTCAAGTAAATGATCAACTAGTGCTTCCCCT-AG-ATAACTATGCTGTGTTTGGCCACAAT----TGAGAGTGTCACTG-AACCACAGAAACA-TCCTCTAATTTCTGGTTCCAGT---ATTGGCCTGTTTCTTCCTAAAT-TACCG-TTTTGTACCTTCTAACCTC--TTTTCTCC---TTTGGCGCCTCCATT--T-CGTGTTTA-CATCAACAACACTATAACTCTACA------TAC--TCATTATACAGAAGATCACAACAATCATC--TAAA---CTAAATTCCTGAT-TAACGTTACTTTCGGGTAATCTTTGGA-T-A-TTTCTTTA-AGGAGTT-TCTCAG-CTTA-TCAGAGGT--TCGAAATTCCTtatcttcaatgtaagtgtattgca
gi|4 : TAT-ACAAACATGT-AACACTGCCAATGTGACACTC--ATGTAC-TACATATTTCTAAATTCAA-TATTTGATCAACTAGTGCTT--CCT-AGAATAACTATGCTG-GTGTGG-CACAAT----TGAGAGTGTCACTGAAACCACAGAAACATTCCTCTAATTTCTGGTT-TAGT---ATTGGCCTGTTTCTTCTTAAATCTACCGTTTTTGTACATTCTCAACTCATTTTCCTCC---TTTGGCGCCTCCATT--T-C-TG-TTA-CACTCACAACACTAT-ACTCTACG------TACCTTCATT-TACAGAAGATCAC-ACAATGATC--TAAAAACCTAAATT-CTGATAAAACG-TACTTTCGGGT-ATTTTTGAA-TAA-TTTTCTTT-AGGAGTTA-CTC-G-CTTA-TCAGAGGG--TCGAAATTCCTT
gi|5 : TGTCAATGTGACAATCATGTG--C-TACATATTTCTTA-TTCAA-TATTTGATCAATTAGTGCTC--CCT-AGAATAATTATGCTG-GTGTGG-CACAAT----TGAGAGTGTCACTGAAACCACAGAAACTTTCCTCTAATTTCTGGTT-CAGT---ATTGGCCTGTTTCTTCTTAAATCTACCGCTTTTGTACATTCTCAACTCATTTTCCTCC---GTTGGCGCCTCCATT--T-C-TGTTTA-CATC
gi|10 : CTGGTT-CAGTTATATTGGCCTTTTTCTTCTTAAATCTACCGCTTTTGTACCTTCTCAAATCAATTTTCTCC---GTTGGCGCCTCCATT--C-C-TGTTTA-CAATAACAATACTAT-ACTCTACGTACATATACCTTCATT-TACAGAAGATCAC-ACAATGACCAAAAAAAATCTAAA
gi|7 : CATCTTTCTCGATATGTGGCCCCTCAATTAATGC-TGTTTATCATCAACAAAAC-A--ACTCTACG------T--CTTCATG-TACAGAAGATCAC-ACAATCGAC--TAAAAACCTTAATT-CTG-TAAAACG-AACTTTCGGAT-ATTTTTGGAGTAAGTTCTCTTATAGGGTTTATC-C-GTCTTATTCAG-GGGTCTCGAAA
gi|16 : ggttttctcttatgccagcCTAAATT-CTGATAAAACG-TACTTTCGGCT-ATTTTTGGA-AAA-TTTTCTAT-AGGAGTTATCTC-G-CTTA-
gi|17 : TTT-AGGAGTTATCTC-G-CTTA-TCAGCGGG--TCGAAATTCCTT
3 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|12 ): GAAACCATTTATCAAACAAATTTACAAATACTGAGTCAACAGTTATCCTAGGACCGAAAGATTGAATAATGAAATTGTGAAGTAAAATGTTTTACTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAAG
Unaligned ( gi|13 ): GAAATCATTTCTCAAACAAAATTACTGACTCAAAAGTTATCCTAGGACCGTAAAATTGAGAAAAGAAATTGTAAAGTAAAATGTTGTACTCACC
Unaligned ( gi|14 ): TCAAACAAAATTACAAATACTGAGTCAACATTTATCCTAGGAACGGTAAATTGAGAAAAGAAATCGTAAAGTAAAATGGTGTACTCACCTGTGA
Alignments
lowQualScore : 11 11111 22222222 777777777777777777777777777777777777777777777 1111 11 1111 111 111 111111
lowQualScore : 11 8 1 66666 99 5 888 22222222 5 66 5 66 111111111111111111111111111111111111111111111 5 0000 5 5 77 5 0 1 0 1 0 8 3 8 8 22 0 11 8 0 8 8 7777 0 0 6 111 1 1 000 77 5 5 5 6 999999 6 6 2 99 6 6 6 6 6 666 0 22 1 5 5 5 3 99
lowQualScore : .. . . ..... .. . ... ........ . .. . .. ............................................. . .... . . .. . . . . . . . . . . .. . .. . . . . .... . . . ... . . ... .. . . . . ...... . . . .. . . . . . ... . .. . . . . . ..
lowQualScore : 00 0 0 77777 88 0 888 55555555 0 99 0 99 222222222222222222222222222222222222222222222 0 6666 0 7 99 0 1 1 1 0 8 0 8 0 0 00 8 00 0 8 0 0 0000 8 8 7 777 0 4 000 99 7 7 7 7 222222 7 7 2 22 7 7 7 7 7 111 1 99 4 7 7 7 2 22
consensus : GGTCGTGTCTGTACT--TTT-AAAACTTTA-----AAGAATT-ATGA-A---GCTCGTGCTAGTC-------GTA-GA--GCACGGTT-C--GAAGAGA-------------C-----------TCGGG------TGAA-----TAA-ATACAGGTA----TCGAGGGG-TACCTTGAAGGGTGTACGACTAGAGAGGTCCT-ATACAGGAT--AACTGAAACATACTATATACAAACATGT-AACACTGTCAATGTGACAGTCATGTGCT-ACATATTTCTCA-TTCAA-TATTTGATCAACTAGTGCTTCC--T-AGAATAACTATGCTG-GTGTGGC-ACAAT----TGAGAGTGTCACTGAAACCACAGAAACATTCCTCTAATTTCTGGTTC-AGT---ATTGGCCTGTTTCTTCTTAAATCTACCGCTTTTGTACATTCTCAACTCATTTTCCTCC---TTTGGCGCCTCCATT--T-C-TGTTTA-CATCAACAACACTATA-CTCTACG------TACCTTCATT-TACAGAAGATCACA-CAATCATC--TAAAAACCTAAATTC-TGATAAAACGT-ACTTTCGGGT-ATTTTTGGA-TAA-TTTTCTT-T-AGGAGTTATCTC-G-CTTA-TCAGAGGG--TCGAAATTCCTT
Reference ( family-943 ) : GGTCGTGTCTGTACT--TTT-AAAANTTTA-----AAGAATT-ATGA-A---GCTCGTGCTAGTC-------GTA-GA--GCACGGTT-C--GAAGAGA-------------C-----------TCGGG------TGAA-----TAA-ATACAGGTA----TCGAGGGG-TACCTTGAAGGGTGTACGACTAGAGAGGTCCT-ATACAGGAT--AACTGAAACATACTATATACAAACATGT-AACACTGTCAATGTGACANTCATGTGCT-ACATATTTCTNA-TTCAA-TATTTGATCAACTAGTGCTTCC--T-AGAATAACTATGCTG-GTGTGGC-ACAAT----TGAGAGTGTCACTGAAACCACAGAAACATTCCTCTAATTTCTGGTTC-AGT---ATTGGCCTGTTTCTTCTTAAATCTACCGCTTTTGTACATTCTCAACTCATTTTTCTCC---TTTGGCGCCTCCATT--T-C-TGTTTA-CATCAACAACACTATA-CTCTACG------TACCTTCATT-TACAGAAGATCACA-CAATCACC--TAAAAACCTAAATTC-TGATAAAACGT-ACTTTCGGGT-ATTTTTGGA-TAA-TTTTCTT-T-AGGAGTTATCTC-G-CTTA-TCAGAGGG--TCGAAATTCCTT
gi|1 : TCTGTACTATTCT-AAATATTTATGTGAAGGAATTTATAG-ATATGCTCTGGCT-GTCCACTCAGATAAGATGGCACGGTT-CTGAAAGAGA-------------TCTGCGAGGAATTCAGG------TGAA-----TAA-ATACAGGTA----TCGAGGGG-TATCTTGAAGGGTGTACGACTCGAGAGGTCCT-ATACAGGAT--AACTGAAACATACTATATACAAACATGT-AACACTGTCAATGTGACAGTCATGTGCT-ACATATTT----------------GATC---------TTCC--TGAGAATAACTATGCTG-GTGTGGC-ACAGTAAGTTGAAAGTGTCACTGAAATCATAGAAACATTCCTCTAATTTCTGGTTC-AGT---ATTAGCTTGTTTCTTTTTAAATCTACCGCTTTTGTACATTTTAAACACCTTTTTCTCC---TTTGGCGTCGCCATT--T-C-TGTAGA-CACCAACAACACTATG-GTCTGCG------TACCTTCATT-TACAAAAGATCACA-TAATCACC--TAAAAACCTAAATTC-TGATAAAACGT-ACTTTTGGGT-ATTTTTGGA-TAA-TTTTCTT-T-AGG--------------TA-TCAGAGGG--CCGAAATTCCTT
gi|10 : aagtccttcCTGGTTC-AGTTATATTGGCCTTTTTCTTCTTAAATCTACCGCTTTTGTACCTTCTCAAATCAATTTTCTCC---GTTGGCGCCTCCATT--C-C-TGTTTA-CAATAACAATACTATA-CTCTACGTACATATACCTTCATT-TACAGAAGATCACA-CAATGACCAAAAAAAATCTAAA
gi|11 : GA-A---GCTCGTGCTAGTT-------GTA-GG--GCACGGTT-C--GAAGAGA--------------------------------------------------TACAGGTA----TCGAAGGG-TACCTTGAATCGTGTACGACTAGAGAGGTCCT-ATTGAGGAT--AACTGAAACATACTATATACAAAC-TAT-----CT-TCAATGTAA
gi|15 : TGTCTGTACT--TTTTAAAACTTTA-----AAGAATT-CTGA-A---GCTCGTGCTAGTT-------GTA-GG--GCGCGGTT-C--GAAAAG--------------------------------------------------ATAGAGGTA----TCGAGGGG-TAgtgtattgca
gi|16 : CTAAATTC-TGATAAAACGT-ACTTTCGGCT-ATTTTTGGA-AAA-TTTTCTA-T-AGGAGTTATCTC-G-CTTA-
gi|17 : TT-T-AGGAGTTATCTC-G-CTTA-TCAGCGGG--TCGAAATTCCTT
gi|2 : GGTCGTGTCTGTACT--TTT-AAAACTTTA-----AAGAATA-ATGA-A---GCTCTTGCTAGTT-------TTA-GA--GCACGGTT-C--GAAGAGA-------------C-----------TCGGG------TGAA-----TAA-ATACAGGTA----TCGAGGGG-TACCCAGAAGGGTGTACGACTAGAGAGGTCCT-ATACAGGAT--AACTGAAACATACTATATACAGACATGT-AACACTGTCAATATGACAGTC--GTGCT-ACATATTTCTCA-TTCAA-TATTTGATCAACTAGTGCTTCC--T-AGAATAACTATGCTG-GTGTGGC-ACAAT----TGAAAGTGTCACTGAAACCACAGAAACATTCCTCTAATTTCTGGTTC-AGT---ATTGGCCTGTTTCTTCTTAAATCTCCCGCTTTTCTACATTCTCAACTCATTTTCCTCC---TTTAGCGCCTCCATT--T-C-TGTTTA-CATCAACAACACTATA-CTCTACG------TACCTTCATT-TACAGAAGATCACA-CAATCATC--TAAAAACCTAAATTC-TGATAAAACGT-ACTTTCGGGT-ATTTTTGGA-TAA-TTTTCTT-A-AGGAGTTATCTC-G-CTTA-TCAGAGGG--TCGAAATTCCTTa
gi|3 : -A---GCTCGTGCTAGTT-------ATA-GA--GCACGGTT-C--GAAGATA-------------C-----------TCGGG------TGAA-----TAA-ATACATGTA----TCGAGGGG-TACCTTGAAGGGTGTGCGATTAGAAAGGCCCT-ATAAAGGAT--AACTCAAACATACTATATAACAACATGT-AAC---------------GTCATGTGCTTACATATTTCTCA-TTCAAGTAAATGATCAACTAGTGCTTCCCCT-AGA-TAACTATGCTGTGTTTGGCCACAAT----TGAGAGTGTCACTGAA-CCACAGAAACAT-CCTCTAATTTCTGGTTCCAGT---ATTGGCCTGTTTCTTCCTAAAT-TACCG-TTTTGTACCTTCTAACCTC--TTTTCTCC---TTTGGCGCCTCCATT--T-CGTGTTTA-CATCAACAACACTATAACTCTACA------TAC--TCATTATACAGAAGATCACAACAATCATC--TAAA---CTAAATTCCTGATTAA-CGTTACTTTCGGGTAATCTTTGGA-TA---TTTCTT-TAAGGAGTT-TCTCAG-CTTA-TCAGAGGT--TCGAAATTCCT
gi|4 : TATACAAACATGT-AACACTGCCAATGTGACACTCATGTACT-ACATATTTCTAAATTCAA-TATTTGATCAACTAGTGCTTCC--T-AGAATAACTATGCTG-GTGTGGC-ACAAT----TGAGAGTGTCACTGAAACCACAGAAACATTCCTCTAATTTCTGGTTT-AGT---ATTGGCCTGTTTCTTCTTAAATCTACCGTTTTTGTACATTCTCAACTCATTTTCCTCC---TTTGGCGCCTCCATT--T-C-TG-TTA-CACTCACAACACTATA-CTCTACG------TACCTTCATT-TACAGAAGATCACA-CAATGATC--TAAAAACCTAAATTC-TGATAAAACGT-ACTTTCGGGT-ATTTTTGAA-TAA-TTTTCTT-T-AGGAGTTA-CTC-G-CTTA-TCAGAGGG--TCGAAATTCCTT
gi|5 : TGTCAATGTGACAATCATGTGCT-ACATATTTCTTA-TTCAA-TATTTGATCAATTAGTGCTCCC--T-AGAATAATTATGCTG-GTGTGGC-ACAAT----TGAGAGTGTCACTGAAACCACAGAAACTTTCCTCTAATTTCTGGTTC-AGT---ATTGGCCTGTTTCTTCTTAAATCTACCGCTTTTGTACATTCTCAACTCATTTTCCTCC---GTTGGCGCCTCCATT--T-C-TGTTTA-CATC
gi|6 : A-----AATAATT---GATA---GC-CGTGCTAATC-------A-A-GA--ACACGGTTTC--GAAGAGA-------------G-----------TCGATAACCCCTAAACTCAGTAATATACAG-TACAAATCGAGGGGGTACCTTGAAGG-TGTACGAATAGAGAGGTCCTAACACGCGATCAAACTAAAAC-TACTATATAACAACA-GTAAACACTGT-AAT-TGAC
gi|7 : tctgttcacaatttaaacttgacaaatgccgCATCTTTCTCGATATGTGGCCCCTCAATTAATGC-TGTTTATCATCAACAAAAC-A-A-CTCTACG------T--CTTCATG-TACAGAAGATCACA-CAATCGAC--TAAAAACCTTAATTC-TG-TAAAACGA-ACTTTCGGAT-ATTTTTGGAGTAAGTTCTCTTAT-AGGGTTTATC-C-GTCTTATTCAG-GGGTCTCGAAA
gi|8 : ggttttctcttatgccagcTGTTTGTACA--TTT-AAAACTTTA-----AAGAATT-ATGA-A---GCTCATGGTAGCT-------GTA-GA--GCACGGTT-C--GAAGAGAGTGAAACCCTAAAC-----------TAATG------TGAA-----TAA-ATACAGGTA----CCGAGGGG-TACTTTCAAGGGTGTACGACTAGAGAGGTCCT-ATACAGGAT--AACTGAAACATACTATATACAAACATGT-AGCACTGCAAATGTGA
gi|9 : GGTCGTGTCTGTACT--TTT-AAAAATGTA-----AAGAATT-ATGA-A---GCTCGTGCTAGT--------GTA-GA--GCACGGTT-C--GAAGAGA-------------C-----------TCAGG------TGAA-----TAA-ATACAGGTA----TCGAGGGG-TACCTTGAAGGGTGTACGACTCGAGAGGTCCT-ATACAGGAT--AACTGAAACATACTATATACAAACACGT-AACACTGTCAATGTGA
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): GAAACCATTTATCAAACAAATTTACAAATACTGAGTCAACAGTTATCCTAGGACCGAAAGATTGAATAATGAAATTGTGAAGTAAAATGTTTTACTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAAG
Unaligned ( gi|13 ): GAAATCATTTCTCAAACAAAATTACTGACTCAAAAGTTATCCTAGGACCGTAAAATTGAGAAAAGAAATTGTAAAGTAAAATGTTGTACTCACC
Unaligned ( gi|14 ): TCAAACAAAATTACAAATACTGAGTCAACATTTATCCTAGGAACGGTAAATTGAGAAAAGAAATCGTAAAGTAAAATGGTGTACTCACCTGTGA
Alignments
lowQualScore : 11 11111 22222222 777777777777777777777777777777777777777777777 1111 11 1111 111 111 111111
lowQualScore : 11 8 66666 99 5 888 22222222 5 66 5 66 111111111111111111111111111111111111111111111 5 0000 5 5 77 5 0 1 0 0 8 3 8 8 22 0 11 8 0 8 8 7777 0 0 6 111 1 1 000 77 5 5 5 6 999999 6 6 0 99 6 6 6 6 6 666 0 22 1 5 5 5 3 99
lowQualScore : .. . ..... .. . ... ........ . .. . .. ............................................. . .... . . .. . . . . . . . . . .. . .. . . . . .... . . . ... . . ... .. . . . . ...... . . . .. . . . . . ... . .. . . . . . ..
lowQualScore : 00 0 77777 88 0 888 55555555 0 99 0 99 222222222222222222222222222222222222222222222 0 6666 0 7 99 0 1 1 1 8 0 2 0 0 00 8 00 0 8 0 0 0000 8 8 7 777 0 4 000 99 7 7 7 7 222222 7 7 3 22 7 7 7 7 7 111 1 99 4 7 7 7 2 22
consensus : GGTCGTGTCTGTACT--TTT-AAAACTTTA-----AAGAATT-ATGA-A---GCTCGTGCTAGTC-------GTA-GA--GCACGGTT-C--GAAGAGA-------------C-----------TCGGG------TGAA-----TAA-ATACAGGTA----TCGAGGGG-TACCTTGAAGGGTGTACGACTAGAGAGGTCCT-ATACAGGAT--AACTGAAACATACTATATACAAACATGT-AACACTGTCAATGTGACAGTCATGTGCT-ACATATTTCTCA-TTCAA-TATTTGATCAACTAGTGCTTCC--T-AGAATAACTATGCTG-GTGTGGC-ACAAT----TGAGAGTGTCACTGAAACCACAGAAACATTCCTCTAATTTCTGGTTC-AGT---ATTGGCCTGTTTCTTCTTAAATCTACCGCTTTTGTACATTCTCAACTCATTTTCCTCC---TTTGGCGCCTCCATT--T-C-TGTTTA-CATCAACAACACTATA-CTCTACG------TACCTTCATT-TACAGAAGATCACA-CAATCATC--TAAAAACCTAAATTC-TGATAAAACGT-ACTTTCGGGT-ATTTTTGGA-TAA-TTTTCTT-T-AGGAGTTATCTC-G-CTTA-TCAGAGGG--TCGAAATTCCTT
Reference ( family-943 ) : GGTCGTGTCTGTACT--TTT-AAAACTTTA-----AAGAATT-ATGA-A---GCTCGTGCTAGTC-------GTA-GA--GCACGGTT-C--GAAGAGA-------------C-----------TCGGG------TGAA-----TAA-ATACAGGTA----TCGAGGGG-TACCTTGAAGGGTGTACGACTAGAGAGGTCCT-ATACAGGAT--AACTGAAACATACTATATACAAACATGT-AACACTGTCAATGTGACAGTCATGTGCT-ACATATTTCTCA-TTCAA-TATTTGATCAACTAGTGCTTCC--T-AGAATAACTATGCTG-GTGTGGC-ACAAT----TGAGAGTGTCACTGAAACCACAGAAACATTCCTCTAATTTCTGGTTC-AGT---ATTGGCCTGTTTCTTCTTAAATCTACCGCTTTTGTACATTCTCAACTCATTTTCCTCC---TTTGGCGCCTCCATT--T-C-TGTTTA-CATCAACAACACTATA-CTCTACG------TACCTTCATT-TACAGAAGATCACA-CAATCATC--TAAAAACCTAAATTC-TGATAAAACGT-ACTTTCGGGT-ATTTTTGGA-TAA-TTTTCTT-T-AGGAGTTATCTC-G-CTTA-TCAGAGGG--TCGAAATTCCTT
gi|1 : TCTGTACTATTCT-AAATATTTATGTGAAGGAATTTATAG-ATATGCTCTGGCT-GTCCACTCAGATAAGATGGCACGGTT-CTGAAAGAGA-------------TCTGCGAGGAATTCAGG------TGAA-----TAA-ATACAGGTA----TCGAGGGG-TATCTTGAAGGGTGTACGACTCGAGAGGTCCT-ATACAGGAT--AACTGAAACATACTATATACAAACATGT-AACACTGTCAATGTGACAGTCATGTGCT-ACATATTT----------------GATC---------TTCC--TGAGAATAACTATGCTG-GTGTGGC-ACAGTAAGTTGAAAGTGTCACTGAAATCATAGAAACATTCCTCTAATTTCTGGTTC-AGT---ATTAGCTTGTTTCTTTTTAAATCTACCGCTTTTGTACATTTTAAACACCTTTTTCTCC---TTTGGCGTCGCCATT--T-C-TGTAGA-CACCAACAACACTATG-GTCTGCG------TACCTTCATT-TACAAAAGATCACA-TAATCACC--TAAAAACCTAAATTC-TGATAAAACGT-ACTTTTGGGT-ATTTTTGGA-TAA-TTTTCTT-T-AGG--------------TA-TCAGAGGG--CCGAAATTCCTT
gi|10 : aagtccttcCTGGTTC-AGTTATATTGGCCTTTTTCTTCTTAAATCTACCGCTTTTGTACCTTCTCAAATCAATTTTCTCC---GTTGGCGCCTCCATT--C-C-TGTTTA-CAATAACAATACTATA-CTCTACGTACATATACCTTCATT-TACAGAAGATCACA-CAATGACCAAAAAAAATCTAAA
gi|11 : GA-A---GCTCGTGCTAGTT-------GTA-GG--GCACGGTT-C--GAAGAGA--------------------------------------------------TACAGGTA----TCGAAGGG-TACCTTGAATCGTGTACGACTAGAGAGGTCCT-ATTGAGGAT--AACTGAAACATACTATATACAAAC-TAT-----CT-TCAATGTAA
gi|15 : TGTCTGTACT--TTTTAAAACTTTA-----AAGAATT-CTGA-A---GCTCGTGCTAGTT-------GTA-GG--GCGCGGTT-C--GAAAAG--------------------------------------------------ATAGAGGTA----TCGAGGGG-TAgtgtattgca
gi|16 : CTAAATTC-TGATAAAACGT-ACTTTCGGCT-ATTTTTGGA-AAA-TTTTCTA-T-AGGAGTTATCTC-G-CTTA-
gi|17 : TT-T-AGGAGTTATCTC-G-CTTA-TCAGCGGG--TCGAAATTCCTT
gi|2 : GGTCGTGTCTGTACT--TTT-AAAACTTTA-----AAGAATA-ATGA-A---GCTCTTGCTAGTT-------TTA-GA--GCACGGTT-C--GAAGAGA-------------C-----------TCGGG------TGAA-----TAA-ATACAGGTA----TCGAGGGG-TACCCAGAAGGGTGTACGACTAGAGAGGTCCT-ATACAGGAT--AACTGAAACATACTATATACAGACATGT-AACACTGTCAATATGACAGTC--GTGCT-ACATATTTCTCA-TTCAA-TATTTGATCAACTAGTGCTTCC--T-AGAATAACTATGCTG-GTGTGGC-ACAAT----TGAAAGTGTCACTGAAACCACAGAAACATTCCTCTAATTTCTGGTTC-AGT---ATTGGCCTGTTTCTTCTTAAATCTCCCGCTTTTCTACATTCTCAACTCATTTTCCTCC---TTTAGCGCCTCCATT--T-C-TGTTTA-CATCAACAACACTATA-CTCTACG------TACCTTCATT-TACAGAAGATCACA-CAATCATC--TAAAAACCTAAATTC-TGATAAAACGT-ACTTTCGGGT-ATTTTTGGA-TAA-TTTTCTT-A-AGGAGTTATCTC-G-CTTA-TCAGAGGG--TCGAAATTCCTTa
gi|3 : -A---GCTCGTGCTAGTT-------ATA-GA--GCACGGTT-C--GAAGATA-------------C-----------TCGGG------TGAA-----TAA-ATACATGTA----TCGAGGGG-TACCTTGAAGGGTGTGCGATTAGAAAGGCCCT-ATAAAGGAT--AACTCAAACATACTATATAACAACATGT-AAC---------------GTCATGTGCTTACATATTTCTCA-TTCAAGTAAATGATCAACTAGTGCTTCCCCT-AGA-TAACTATGCTGTGTTTGGCCACAAT----TGAGAGTGTCACTGAA-CCACAGAAACAT-CCTCTAATTTCTGGTTCCAGT---ATTGGCCTGTTTCTTCCTAAAT-TACCG-TTTTGTACCTTCTAACCTC--TTTTCTCC---TTTGGCGCCTCCATT--T-CGTGTTTA-CATCAACAACACTATAACTCTACA------TAC--TCATTATACAGAAGATCACAACAATCATC--TAAA---CTAAATTCCTGATTAA-CGTTACTTTCGGGTAATCTTTGGA-TA---TTTCTT-TAAGGAGTT-TCTCAG-CTTA-TCAGAGGT--TCGAAATTCCT
gi|4 : TATACAAACATGT-AACACTGCCAATGTGACACTCATGTACT-ACATATTTCTAAATTCAA-TATTTGATCAACTAGTGCTTCC--T-AGAATAACTATGCTG-GTGTGGC-ACAAT----TGAGAGTGTCACTGAAACCACAGAAACATTCCTCTAATTTCTGGTTT-AGT---ATTGGCCTGTTTCTTCTTAAATCTACCGTTTTTGTACATTCTCAACTCATTTTCCTCC---TTTGGCGCCTCCATT--T-C-TG-TTA-CACTCACAACACTATA-CTCTACG------TACCTTCATT-TACAGAAGATCACA-CAATGATC--TAAAAACCTAAATTC-TGATAAAACGT-ACTTTCGGGT-ATTTTTGAA-TAA-TTTTCTT-T-AGGAGTTA-CTC-G-CTTA-TCAGAGGG--TCGAAATTCCTT
gi|5 : TGTCAATGTGACAATCATGTGCT-ACATATTTCTTA-TTCAA-TATTTGATCAATTAGTGCTCCC--T-AGAATAATTATGCTG-GTGTGGC-ACAAT----TGAGAGTGTCACTGAAACCACAGAAACTTTCCTCTAATTTCTGGTTC-AGT---ATTGGCCTGTTTCTTCTTAAATCTACCGCTTTTGTACATTCTCAACTCATTTTCCTCC---GTTGGCGCCTCCATT--T-C-TGTTTA-CATC
gi|6 : A-----AATAATT---GATA---GC-CGTGCTAATC-------A-A-GA--ACACGGTTTC--GAAGAGA-------------G-----------TCGATAACCCCTAAACTCAGTAATATACAG-TACAAATCGAGGGGGTACCTTGAAGG-TGTACGAATAGAGAGGTCCTAACACGCGATCAAACTAAAAC-TACTATATAACAACA-GTAAACACTGT-AAT-TGAC
gi|7 : tctgttcacaatttaaacttgacaaatgccgCATCTTTCTCGATATGTGGCCCCTCAATTAATGC-TGTTTATCATCAACAAAAC-A-A-CTCTACG------T--CTTCATG-TACAGAAGATCACA-CAATCGAC--TAAAAACCTTAATTC-TG-TAAAACGA-ACTTTCGGAT-ATTTTTGGAGTAAGTTCTCTTAT-AGGGTTTATC-C-GTCTTATTCAG-GGGTCTCGAAA
gi|8 : ggttttctcttatgccagcTGTTTGTACA--TTT-AAAACTTTA-----AAGAATT-ATGA-A---GCTCATGGTAGCT-------GTA-GA--GCACGGTT-C--GAAGAGAGTGAAACCCTAAAC-----------TAATG------TGAA-----TAA-ATACAGGTA----CCGAGGGG-TACTTTCAAGGGTGTACGACTAGAGAGGTCCT-ATACAGGAT--AACTGAAACATACTATATACAAACATGT-AGCACTGCAAATGTGA
gi|9 : GGTCGTGTCTGTACT--TTT-AAAAATGTA-----AAGAATT-ATGA-A---GCTCGTGCTAGT--------GTA-GA--GCACGGTT-C--GAAGAGA-------------C-----------TCAGG------TGAA-----TAA-ATACAGGTA----TCGAGGGG-TACCTTGAAGGGTGTACGACTCGAGAGGTCCT-ATACAGGAT--AACTGAAACATACTATATACAAACACGT-AACACTGTCAATGTGA
blockSeqs : . T . C T . T . . T . GTGAAACCCTAAACTAATGTGAA T CAAA G A CA A C T C A G TT CC . T C . C TAT C A ATA AA G G T A TACATA A A AA C T A G G TA AT T A T T C TC
blockSeqs : . . . A . . T . . . . GTCGATAACCCCTAAACTCAG . . . . . . C . C . . AA . . . . . . . C A . . . . . . . . . . . . . . . AT AT T . . . A .
blockSeqs : . . . A . . T . . . . CTCGGGTGAA . . . . . . C . A . . TT . . . . . . . T A . . . . . . . . . . . . . . . T AT T . . . A .
blockSeqs : . . . A . . T . . . . CTCGGGTGAA . . . . . . C . T . . TT . . . . . . . C A . . . . . . . . . . . . . . . T AT T . . . A .
blockSeqs : . . . . C . . . . CTCAGGTGAA . . . . . . A . . . A . . . . . . . . . . . . . . . A T T . . . . .
blockSeqs : . . T . . . . . . . . . . . C . . . . . . T A . . . .
blockSeqs : . . . . . . . . . . . . .
blockSeqs : .
blockSeqCons : ** ***** A* *** T******* ** ** CTCGGGTGAA*********************************** TT **** AT
originalCons : GGTCGTGTCTGTACT--TTT-AAAACTTTA-----AAGAATT-ATGA-A---GCTCGTGCTAGTC-------GTA-GA--GCACGGTT-C--GAAGAGA-------------C-----------TCGGG------TGAA-----TAA-ATACAGGTA----TCGAGGGG-TACCTTGAAGGGTGTACGACTAGAGAGGTCCT-ATACAGGAT--AACTGAAACATACTATATACAAACATGT-AACACTGTCAATGTGACAGTCATGTGCT-ACATATTTCTCA-TTCAA-TATTTGATCAACTAGTGCTTCC--T-AGAATAACTATGCTG-GTGTGGC-ACAAT----TGAGAGTGTCACTGAAACCACAGAAACATTCCTCTAATTTCTGGTTC-AGT---ATTGGCCTGTTTCTTCTTAAATCTACCGCTTTTGTACATTCTCAACTCATTTTCCTCC---TTTGGCGCCTCCATT--T-C-TGTTTA-CATCAACAACACTATA-CTCTACG------TACCTTCATT-TACAGAAGATCACA-CAATCATC--TAAAAACCTAAATTC-TGATAAAACGT-ACTTTCGGGT-ATTTTTGGA-TAA-TTTTCTT-T-AGGAGTTATCTC-G-CTTA-TCAGAGGG--TCGAAATTCCTT
finalCons : GGTCGTGTCTGTACT--TTT-AAAACTTTA-----AAGAATTA-TGA-A---GCTCGTGCTAGTT-------GTA-GA--GCACGGTT-C--GAAGAGACTCGGGTGAA-----------------------------------TAA-ATACAGGTA----TCGAGGGG-TACCTTGAAGGGTGTACGACTAGAGAGGTCCT-ATACAGGAT--AACTGAAACATACTATATACAAACATGT-AACACTGTCAATGTGACAGTCATGTGCT-ACATATTTCTCA-TTCAA-TATTTGATCAACTAGTGCTTCC--T-AGAATAACTATGCTG-GTGTGGC-ACAAT----TGAGAGTGTCACTGAAACCACAGAAACATTCCTCTAATTTCTGGTTC-AGT---ATTGGCCTGTTTCTTCTTAAATCTACCGCTTTTGTACATTCTCAACTCATTTTCCTCC---TTTGGCGCCTCCATT--T-C-TGTTTA-CATCAACAACACTATA-CTCTACG------TACCTTCATT-TACAGAAGATCACA-CAATCATC--TAAAAACCTAAATTC-TGATAAAACGT-ACTTTCGGGT-ATTTTTGGA-TAA-TTTTCTT-T-AGGAGTTATCTC-G-CTTA-TCAGAGGG--TCGAAATTCCTT
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): GAAACCATTTATCAAACAAATTTACAAATACTGAGTCAACAGTTATCCTAGGACCGAAAGATTGAATAATGAAATTGTGAAGTAAAATGTTTTACTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAAG
Unaligned ( gi|13 ): GAAATCATTTCTCAAACAAAATTACTGACTCAAAAGTTATCCTAGGACCGTAAAATTGAGAAAAGAAATTGTAAAGTAAAATGTTGTACTCACC
Unaligned ( gi|14 ): TCAAACAAAATTACAAATACTGAGTCAACATTTATCCTAGGAACGGTAAATTGAGAAAAGAAATCGTAAAGTAAAATGGTGTACTCACCTGTGA
Alignments
lowQualScore : 11 11111 22222222222 777777777777777777777777777777777777777777777 1111 11 1111 111 111 111111
lowQualScore : 11 8 66666 99 5 888 1 33333333333 66 5 66 111111111111111111111111111111111111111111111 5 0000 5 5 77 5 0 1 0 0 8 3 8 8 22 0 11 8 0 8 8 7777 0 0 6 111 1 1 000 77 5 5 5 6 999999 6 6 0 99 6 6 6 6 6 666 0 22 1 5 5 5 3 99
lowQualScore : .. . ..... .. . ... . ........... .. . .. ............................................. . .... . . .. . . . . . . . . . .. . .. . . . . .... . . . ... . . ... .. . . . . ...... . . . .. . . . . . ... . .. . . . . . ..
lowQualScore : 00 0 77777 88 0 888 4 88888888888 99 0 99 222222222222222222222222222222222222222222222 0 6666 0 7 99 0 1 1 1 8 0 2 0 0 00 8 00 0 8 0 0 0000 8 8 7 777 0 4 000 99 7 7 7 7 222222 7 7 3 22 7 7 7 7 7 111 1 99 4 7 7 7 2 22
consensus : GGTCGTGTCTGTACT--TTT-AAAACTTTA-----AAGAATT-ATGA-A---GCTCGTGCTAGTTGT-----------AGA--GCACGGTT-C--GAAGAGA-------------C-----------TCGGG------TGAA-----TAA-ATACAGGTA----TCGAGGGG-TACCTTGAAGGGTGTACGACTAGAGAGGTCCT-ATACAGGAT--AACTGAAACATACTATATACAAACATGT-AACACTGTCAATGTGACAGTCATGTGCT-ACATATTTCTCA-TTCAA-TATTTGATCAACTAGTGCTTCC--T-AGAATAACTATGCTG-GTGTGGC-ACAAT----TGAGAGTGTCACTGAAACCACAGAAACATTCCTCTAATTTCTGGTTC-AGT---ATTGGCCTGTTTCTTCTTAAATCTACCGCTTTTGTACATTCTCAACTCATTTTCCTCC---TTTGGCGCCTCCATT--T-C-TGTTTA-CATCAACAACACTATA-CTCTACG------TACCTTCATT-TACAGAAGATCACA-CAATCATC--TAAAAACCTAAATTC-TGATAAAACGT-ACTTTCGGGT-ATTTTTGGA-TAA-TTTTCTT-T-AGGAGTTATCTC-G-CTTA-TCAGAGGG--TCGAAATTCCTT
Reference ( family-943 ) : GGTCGTGTCTGTACT--TTT-AAAACTTTA-----AAGAATT-ATGA-A---GCTCGTGCTAGTTGT-----------AGA--GCACGGTT-C--GAAGAGA-------------C-----------TCGGG------TGAA-----TAA-ATACAGGTA----TCGAGGGG-TACCTTGAAGGGTGTACGACTAGAGAGGTCCT-ATACAGGAT--AACTGAAACATACTATATACAAACATGT-AACACTGTCAATGTGACAGTCATGTGCT-ACATATTTCTCA-TTCAA-TATTTGATCAACTAGTGCTTCC--T-AGAATAACTATGCTG-GTGTGGC-ACAAT----TGAGAGTGTCACTGAAACCACAGAAACATTCCTCTAATTTCTGGTTC-AGT---ATTGGCCTGTTTCTTCTTAAATCTACCGCTTTTGTACATTCTCAACTCATTTTCCTCC---TTTGGCGCCTCCATT--T-C-TGTTTA-CATCAACAACACTATA-CTCTACG------TACCTTCATT-TACAGAAGATCACA-CAATCATC--TAAAAACCTAAATTC-TGATAAAACGT-ACTTTCGGGT-ATTTTTGGA-TAA-TTTTCTT-T-AGGAGTTATCTC-G-CTTA-TCAGAGGG--TCGAAATTCCTT
gi|1 : TCTGTACTATTCT-AAATATTTATGTGAAGGAATTTATAG-ATATGCTC----TGGCTGTCCACTCAGATAAGATGGCACGGTT-CTGAAAGAGA-------------TCTGCGAGGAATTCAGG------TGAA-----TAA-ATACAGGTA----TCGAGGGG-TATCTTGAAGGGTGTACGACTCGAGAGGTCCT-ATACAGGAT--AACTGAAACATACTATATACAAACATGT-AACACTGTCAATGTGACAGTCATGTGCT-ACATATTT----------------GATC---------TTCC--TGAGAATAACTATGCTG-GTGTGGC-ACAGTAAGTTGAAAGTGTCACTGAAATCATAGAAACATTCCTCTAATTTCTGGTTC-AGT---ATTAGCTTGTTTCTTTTTAAATCTACCGCTTTTGTACATTTTAAACACCTTTTTCTCC---TTTGGCGTCGCCATT--T-C-TGTAGA-CACCAACAACACTATG-GTCTGCG------TACCTTCATT-TACAAAAGATCACA-TAATCACC--TAAAAACCTAAATTC-TGATAAAACGT-ACTTTTGGGT-ATTTTTGGA-TAA-TTTTCTT-T-AGG--------------TA-TCAGAGGG--CCGAAATTCCTT
gi|10 : aagtccttcCTGGTTC-AGTTATATTGGCCTTTTTCTTCTTAAATCTACCGCTTTTGTACCTTCTCAAATCAATTTTCTCC---GTTGGCGCCTCCATT--C-C-TGTTTA-CAATAACAATACTATA-CTCTACGTACATATACCTTCATT-TACAGAAGATCACA-CAATGACCAAAAAAAATCTAAA
gi|11 : GA-A---GCTCGTGCTAGTTGT-----------AGG--GCACGGTT-C--GAAGAGA--------------------------------------------------TACAGGTA----TCGAAGGG-TACCTTGAATCGTGTACGACTAGAGAGGTCCT-ATTGAGGAT--AACTGAAACATACTATATACAAAC-TAT-----CT-TCAATGTAA
gi|15 : TGTCTGTACT--TTTTAAAACTTTA-----AAGAATT-CTGA-A---GCTCGTGCTAGTTGT-----------AGG--GCGCGGTT-C--GAAAAG--------------------------------------------------ATAGAGGTA----TCGAGGGG-TAgtgtattgca
gi|16 : CTAAATTC-TGATAAAACGT-ACTTTCGGCT-ATTTTTGGA-AAA-TTTTCTA-T-AGGAGTTATCTC-G-CTTA-
gi|17 : TT-T-AGGAGTTATCTC-G-CTTA-TCAGCGGG--TCGAAATTCCTT
gi|2 : GGTCGTGTCTGTACT--TTT-AAAACTTTA-----AAGAATA-ATGA-A---GCTCTTGCTAGTTTT-----------AGA--GCACGGTT-C--GAAGAGA-------------C-----------TCGGG------TGAA-----TAA-ATACAGGTA----TCGAGGGG-TACCCAGAAGGGTGTACGACTAGAGAGGTCCT-ATACAGGAT--AACTGAAACATACTATATACAGACATGT-AACACTGTCAATATGACAGTC--GTGCT-ACATATTTCTCA-TTCAA-TATTTGATCAACTAGTGCTTCC--T-AGAATAACTATGCTG-GTGTGGC-ACAAT----TGAAAGTGTCACTGAAACCACAGAAACATTCCTCTAATTTCTGGTTC-AGT---ATTGGCCTGTTTCTTCTTAAATCTCCCGCTTTTCTACATTCTCAACTCATTTTCCTCC---TTTAGCGCCTCCATT--T-C-TGTTTA-CATCAACAACACTATA-CTCTACG------TACCTTCATT-TACAGAAGATCACA-CAATCATC--TAAAAACCTAAATTC-TGATAAAACGT-ACTTTCGGGT-ATTTTTGGA-TAA-TTTTCTT-A-AGGAGTTATCTC-G-CTTA-TCAGAGGG--TCGAAATTCCTTa
gi|3 : -A---GCTCGTGCTAGTTAT-----------AGA--GCACGGTT-C--GAAGATA-------------C-----------TCGGG------TGAA-----TAA-ATACATGTA----TCGAGGGG-TACCTTGAAGGGTGTGCGATTAGAAAGGCCCT-ATAAAGGAT--AACTCAAACATACTATATAACAACATGT-AAC---------------GTCATGTGCTTACATATTTCTCA-TTCAAGTAAATGATCAACTAGTGCTTCCCCT-AGA-TAACTATGCTGTGTTTGGCCACAAT----TGAGAGTGTCACTGAA-CCACAGAAACAT-CCTCTAATTTCTGGTTCCAGT---ATTGGCCTGTTTCTTCCTAAAT-TACCG-TTTTGTACCTTCTAACCTC--TTTTCTCC---TTTGGCGCCTCCATT--T-CGTGTTTA-CATCAACAACACTATAACTCTACA------TAC--TCATTATACAGAAGATCACAACAATCATC--TAAA---CTAAATTCCTGATTAA-CGTTACTTTCGGGTAATCTTTGGA-TA---TTTCTT-TAAGGAGTT-TCTCAG-CTTA-TCAGAGGT--TCGAAATTCCT
gi|4 : TATACAAACATGT-AACACTGCCAATGTGACACTCATGTACT-ACATATTTCTAAATTCAA-TATTTGATCAACTAGTGCTTCC--T-AGAATAACTATGCTG-GTGTGGC-ACAAT----TGAGAGTGTCACTGAAACCACAGAAACATTCCTCTAATTTCTGGTTT-AGT---ATTGGCCTGTTTCTTCTTAAATCTACCGTTTTTGTACATTCTCAACTCATTTTCCTCC---TTTGGCGCCTCCATT--T-C-TG-TTA-CACTCACAACACTATA-CTCTACG------TACCTTCATT-TACAGAAGATCACA-CAATGATC--TAAAAACCTAAATTC-TGATAAAACGT-ACTTTCGGGT-ATTTTTGAA-TAA-TTTTCTT-T-AGGAGTTA-CTC-G-CTTA-TCAGAGGG--TCGAAATTCCTT
gi|5 : TGTCAATGTGACAATCATGTGCT-ACATATTTCTTA-TTCAA-TATTTGATCAATTAGTGCTCCC--T-AGAATAATTATGCTG-GTGTGGC-ACAAT----TGAGAGTGTCACTGAAACCACAGAAACTTTCCTCTAATTTCTGGTTC-AGT---ATTGGCCTGTTTCTTCTTAAATCTACCGCTTTTGTACATTCTCAACTCATTTTCCTCC---GTTGGCGCCTCCATT--T-C-TGTTTA-CATC
gi|6 : A-----AATAATT---GATA---GC-CGTGCTAATCA------------AGA--ACACGGTTTC--GAAGAGA-------------G-----------TCGATAACCCCTAAACTCAGTAATATACAG-TACAAATCGAGGGGGTACCTTGAAGG-TGTACGAATAGAGAGGTCCTAACACGCGATCAAACTAAAAC-TACTATATAACAACA-GTAAACACTGT-AAT-TGAC
gi|7 : tctgttcacaatttaaacttgacaaatgccgCATCTTTCTCGATATGTGGCCCCTCAATTAATGC-TGTTTATCATCAACAAAAC-A-A-CTCTACG------T--CTTCATG-TACAGAAGATCACA-CAATCGAC--TAAAAACCTTAATTC-TG-TAAAACGA-ACTTTCGGAT-ATTTTTGGAGTAAGTTCTCTTAT-AGGGTTTATC-C-GTCTTATTCAG-GGGTCTCGAAA
gi|8 : ggttttctcttatgccagcTGTTTGTACA--TTT-AAAACTTTA-----AAGAATT-ATGA-A---GCTCATGGTAGCTGT-----------AGA--GCACGGTT-C--GAAGAGAGTGAAACCCTAAAC-----------TAATG------TGAA-----TAA-ATACAGGTA----CCGAGGGG-TACTTTCAAGGGTGTACGACTAGAGAGGTCCT-ATACAGGAT--AACTGAAACATACTATATACAAACATGT-AGCACTGCAAATGTGA
gi|9 : GGTCGTGTCTGTACT--TTT-AAAAATGTA-----AAGAATT-ATGA-A---GCTCGTGCTAGT-GT-----------AGA--GCACGGTT-C--GAAGAGA-------------C-----------TCAGG------TGAA-----TAA-ATACAGGTA----TCGAGGGG-TACCTTGAAGGGTGTACGACTCGAGAGGTCCT-ATACAGGAT--AACTGAAACATACTATATACAAACACGT-AACACTGTCAATGTGA
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): GAAACCATTTATCAAACAAATTTACAAATACTGAGTCAACAGTTATCCTAGGACCGAAAGATTGAATAATGAAATTGTGAAGTAAAATGTTTTACTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAAG
Unaligned ( gi|13 ): GAAATCATTTCTCAAACAAAATTACTGACTCAAAAGTTATCCTAGGACCGTAAAATTGAGAAAAGAAATTGTAAAGTAAAATGTTGTACTCACC
Unaligned ( gi|14 ): TCAAACAAAATTACAAATACTGAGTCAACATTTATCCTAGGAACGGTAAATTGAGAAAAGAAATCGTAAAGTAAAATGGTGTACTCACCTGTGA