lowQualScore : 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 11111111111111111111111111111111111111111111111111111111111111111 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 11111111111111111111111111111111
lowQualScore : 1 1111111 33 1 22222222222222222 333333333 3 444444 1 222222222 22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 111111 111111 333 22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 222222 111 111 222222 1 1 111 77777777777777777777777777777777777777777777777777777777777777777 222222222 22 333333 11111 3333 11 6666666666666666 5555555555555555555 22222 1 1111 22222222222222222 1 333333 222 1 22 111111 2222222222 1111111 88888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 7777777 2 3 22222 1 33333 1 11 00000000000000000000000000000000 1111 11 11 333333333 1 5555555555555555555 11 333333333333 1 1 11 111
lowQualScore : 3 3 5 5 2 5 9999999 7 77 5 5 0 77 5 88888888888888888 5 5 888 5 55 333333333 5 0 3 6 333333 888 5 5 4 2 66 66 444444444 4 66 4 4 4 4 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 3 66 444444 444444 888 5 5 6 66 5 22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 5 1 666666 222 5 000 555555 9999 77 1 7 4 5 77 999 6 3 6 6 99 99 4 5 33333333333333333333333333333333333333333333333333333333333333333 000000000 5 11 77 5 5 88 222222 5 44444 77 2222 33 99 99 4444444444444444 6 6 6 6 6 1111111111111111111 55 88888 1 3 5 9999 3 1111 55555555555555555 99999999 3 666 4 3 3 3 1 888888 0 000 888 0 5 1 33 4 222222 2222222222 99 4 4 11 4 2222222 555 5 66 5 77777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 0 9999999 2 5 5 0 6 99 2 00000 8 5 4 3 00000 5 11 7 3 99999999999999999999999999999999 0000 8 22 0 0 33 888888888 0 4 8 2 9999999999999999999 33 666666666666 3 5 0 3 88 6 555 6
lowQualScore : . . . . . . ....... . .. . . . .. . ................. . . ... . .. ......... . . . . ...... ... . . . . .. .. ......... . .. . . . . .................................................................................................................................................................... . .. ...... ...... ... . . . .. . ................................................................................................................. . . ...... ... . ... ...... .... .. . . . . .. ... . . . . .. .. . . ................................................................. ......... . .. .. . . .. ...... . ..... .. .... .. .. .. ................ . . . . . ................... .. ..... . . . .... . .... ................. ........ . ... . . . . . ...... . ... ... . . . .. . ...... .......... .. . . .. . ....... ... . .. . ................................................................................................................. . ....... . . . . . .. . ..... . . . . ..... . .. . . ................................ .... . .. . . .. ......... . . . . ................... .. ............ . . . . .. . ... .
lowQualScore : 5 7 0 6 0 0 7777777 6 00 7 7 1 00 0 11111111111111111 0 0 888 0 11 666666666 0 4 4 9 111111 666 0 0 4 4 11 99 777777777 4 11 4 4 4 4 88888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 2 99 444444 444444 888 0 0 0 99 0 66666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 7 4 333333 111 9 000 333333 9999 99 4 1 7 7 99 888 7 5 7 7 77 22 7 7 00000000000000000000000000000000000000000000000000000000000000000 999999999 7 33 99 7 7 00 333333 3 33333 99 1111 66 22 22 2222222222222222 7 7 7 7 7 7777777777777777777 88 00000 4 3 7 4444 6 1111 11111111111111111 55555555 6 444 5 6 6 6 4 000000 2 999 888 0 0 0 99 4 888888 0000000000 11 4 4 88 4 9999999 777 0 99 0 33333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 4 9999999 9 7 0 2 7 22 0 00000 8 5 0 2 00000 5 33 3 2 00000000000000000000000000000000 2222 0 22 8 8 88 222222222 0 0 8 0 2222222222222222222 22 000000000000 2 8 0 2 22 7 333 0
consensus : NAAGGGTCTATGCAATGCAA-TTCGA-TTTTCC----GGCAGAGTAAA-CACC-T-ANTC-AA-ATT-A-AA-AT-NATATCCTGAAAATTT-G-A---CGA-AGNTAC-N-G-GCNGAA-TCAACGGAGATATTA-GCGAAAAACTCG--N--AAC--C-ACAC-CTG-AACGGATTTTTGA--AAAAG-TCGG---TTCTAAGC-GCCA--A-ATCGC-TG-TGACG-TCACG---CG-C-GTGTNTA----GCCA-TCTTGGA-AGT-AGAGAAAG-NGC-GTG-GATNAG-CAGNTGAT--A--TTTCGC--G-TA-TTTGA--ATTGTTTG---TTTGTAT--TTT-AACGTATT--TANATG--CT-TAAGGT--A-TT-NN-A-TTTAGTCGTGATCGTTGAAAG--TTTTCAGTCG------TA------GTATTC--G-TGATC-GGCATTGT--A-AATAC------------T--TA----T-ACCG----------T---G--T--ANTG------TATTTCT-T---TC-G-A-CGTG-TG-AG-----------A------------AAAG-TTACACACC---ATAT--ACNTAACATT---CNCC-ATAGCCATNG-AGAA--T-TTT-CCAGCCTTGTG-AA--CATACAA-TACAAGGCAGT-GGCTGAAGCCTG-GT-NATAAT--TTGCTTC-AC-------------------TACA---T-T----AT----A-T--------------A--------ATTAT--------TTC-ATGTATTTACGTATTTT--T-CT-C-NGACTGAAAC-C---ATACTGCC-----TCT--GAGA----GA--TGAA--CGGATGAAATT--TCT------G---------ACTA-TACTTT-TATTTTA-TT-TA-CT-------------------GTAGGTACAGACA----TGA-A-TTCAGGGT----TGCA-AATAA--C-CACT--------C--------GCATA----T---GCG-AGT---AA-TTT-A-TTTGTGGGC-GC-GACCAAATTGTGAAAATCCTCTCNNC---C-ACA-TGGCGAGTA-AAACT-T------AC---C------TTTT-AAAA-ATC-CGCTC-G---TN--GTTTGA-C-G-CTGC--A-TT-ACGTTT-TT-----------G-T----------AATACACATTTT-T---------ATTTC-CA---GAA------A----TTTT-A-------AAGT-----------GTGTGCGTATTTACATTG-----TGTATGTACAGA-ATTTTG-AATCGTTTTCTC-TC--GTGAAGC-----TCGTGTTAAGNATTT---G-TTACGTGTGAATATNTAACGAAGTCGGGTTAGAAATTGC-TACCAATGC-AA-AAA---AAAA--AAAAAAAAAATCA-G-T-TTAGTGAAAG-GTTTATGAAAAT--GCCAC---C----AAAAATC-GNTTTACTGAAAGTTTTATGAA-TTA-TGATTA-GATTAATGAA-ATTTTGGAA--TAATATANTTTCTTTTGCNAAAC-AAATAA-TTATATAATTGTCGCGATAGATACC-GAATG
Reference ( gi|2 ) : TAAAGGTCTGTGCAATGCAA-TGCTA-TTTTTT----GATAAAATAAAATATC-T-ACTC-AA-A---A-AA-AT-GATGTCCTGAAAATTT-G-A---CGA-AGATAC-T-G-ACTGAA-TTAACAGAGATATTACGCGAAAAACTC---C--AAT--C-ACAC-CTG-AACGTATTTTTGA--AAAAG-CCGG---GTTTAAGC-GCCA--A-ATCGC-TG-TGACG-TCAC----CG-C-ATGTTTTGA--GCCA-TATCGAA-AGT-AGAAAAAC-AGT-ACG-AATGAG-CAGTTGA---A--TTTCGC--T-TAGTTTGA--ATTGTTTG---TTTGTAT--TTTCAACGTATT--TAAATG--TT-TAAGAT--A-TT-AA-A-TTT----GTGATCGTTGAAAG--TTTTCAGTCG------TA------GTATT---G-TGATC-GGCACTGT--A-AAT--------------T--TA----T-ACCG----------T---G--T--ATTG------TATTTCT-T---TC-G-A-CGTG-TG-AG-----------A------------AAAG-TTGCAC-TT---ATAT--CCATAACATT---CACT-AGAGCCATGG-AGAA--T-TTT-CCAGCATTGTG-AA--CATACAA-TATAAGGCAGT-GACTGAACCCTG-GT-TATAAT--TTGATTT-AC-------------------TAC-----------------A-T--------------A--------ATTAT--------TTC-ATGCATTTACGTATTTT--T-CT-C-CGACTGAAA--C---ATATTGCC-----TCT--GAGA----GA--TGAA--CGGATGAAATT--TCT------G---------ACTA-TACTTT-TATTTTA-TT-TA-CT-------------------GTAGGTACAGAC-----TGA-A-TTCAGGGT----TGCA-AATAA--C-CACT--------C--------GCATA----T---GCG-AGT---AA-TTT-A-TTTGTGGGC-GCGGACCAAATTGTGAAAATCCTCTCCGC---C-ACA-TGGCGAAT--AAACT-T------AC---C------TTTT-AAAA-ATC-CGCCC-G---TC--GTTTGA-C-G-CTGC--A-TC-ACA-----------------G-T----------AATACACATTTT-T---------ATTTC-CA---GAA------A----T------------AAGT-----------GTGTGCGTATTTACATTGTACAGTGTATGTAC-GA-ATTTTG-AATCGTTTTCTC-TC--GT-AAGC-----TCGTGTTAAGAATTT---G-TTACGTGTGAATATTTAACGAAGTCGGGTTAGAAATTGC-TACCAATGC----------AAAA--AAAAAAAAAATCA-G-T-TTAGTGAAAG-ATTTATGAAAAT--GCCAC---C----AAAAATC-GTTTTACTGAGAGTTTTATG-A-CTATTGATTAGGCCTAATGAA-ATTTTGG-A--TAATATATTTTCTTTTGCAAAAC-AAATAA-CTATATAATTGTCGCGATAGCTACC-GAACGA
gi|3 : AAGGGTCTATGCAATGAAA-TGCGA-TTTTTTTTTTGGTAGAATAAA-CATC-T-ACTC-AA-A---T-AA-AT-AATGTCCTGAAAATTTTG-A---CGA-AGATAC-T-G-GCTGAA-TTAACAGAGATATTA-GCGAAAAACTC---C--AAT--T-ATACACTG-AAAGTATTTTTGA--AATAG-TCGG---ATT-AAGCCGC----A-ATCGC-TG-TGACG-TCACA---CA-C-AT--------------------A-AAC-AGCAA-----GT-ACA-GATCAA-CAGTTGG---A--TGTCGC--T-TTGTTTGA--ATTGTTTG---TTTGTAG--TTTTAACGTACT-----AT------TAAAAT----TT-A-----------GTGATCGTTGAA-G--TTTTCAGTCG------TA------GAATT---GGTGATC-G-CATTGT--A-AATACGCGTGATATATAT--TAGATTTGATCGAA--------T---G--TTGAATG------TACTTCT-T---TG-GGA-CGCG-TG--G-----------A------------AAAGATTACAC-CC---ATAT--ACTTAACATT---C-CC-ATAGCTGTGA-TAGT--T-TTT-CCAGTCTTGTG-AA--CATAC-A-TACAAGGCAGTGGGCTGAAGCCTG-GT-GATAAT--TTGCTTT-AC-------------------TGCAATATATTTTAATCATTA-T--------------G--------ATTAT--------TTC-AT--ATTTA-GTATTTT--T-CT-C-GGACTGAAAC-C---ATACTGCC-----TCT--GAGAGATCGA--TGAA--CAGATGAAATT--TCT------GTTGTAGA--AATA-TACTTT-TATTTTA-TT-TA-CT-------------------GTAGGT--AGACA----TAATA-TTCAGGGT----TGCA-AATAA--CACA-T--------C--------TAAT-----------G-AGT---AT-TTT-A-TTTGTGAGT----GACCAAATTGTGAAAAT-CTCT-CGCTCAC-ATA-TGGCGAGT--AAACT-T------AC---T------TTTT-AAAAGATC-CGCAT-GCGTTC--TTTTGA-C-G-CTGC--A-T--ACGTTTGTTGCCGAGT----G-T----------AAT-CATATTTT-T---------ATTTC-GA---GAA------A----TTTTAATGTG---AAGT-----------G-GTGCGTATCAACAT-------TGTATGTACAGA-ATTTTG-AAT--TTTTCTC-GA--GTGAAGC-----TC
gi|6 : taAAAGGTCTGTGCAATGCAA-TGCTA-TTTTTT----GATAGAATAAACAATCATAACTC-AA-A---GTAA-TT-GATGT-CTGAAAATTT-G-A---CGA-A-ATAC-TAG-GCTGAATTTAACAGAGATATTA-GC-AAAATCTC---CA-AAT--C-ACAC-CTGAAACGTTATTTTGACTAATAGTCCTG---GTTCAGTT-GCCA--ATATCGC-TG-TGACGTTCAC----CGTC-ATGTTTGAG--GCCATTATCGAA-AGA-GAAAAAACAAGCGACGTAATGAGTCAGTTGA---A--TTTTGCGAC-TAGAT--A--GTTGTTTG----TTGTTT--TTTCAACGTATTTATAGATG--TT-TAAGAT--A-CTAAA-A-TTTA---GTGATCGTAGACAGTTTTTTCAGTCG------TAGTACATGTATTTTGG-TGATC-GCAATTGT--A-AA---------------T--TA----T-ACCG----------T---GTAT--ATTG---------TTCTAT---TCGG-A-CGTGATG-AA-----------A------------AAAG--TGCACATT---ATAT--CCATAACATTTCACACT-GAGGCCATTG--GAATTT-TTT-CCAGCATTGTGAAA--CATAAAATTATAAGG-AAT-GGCTGAACACTGTGT-TATTAC--TTGATTTAACTTACTATGTTGATAACACATAT-----------------A-T--------------A--------ATTAT--------TTCTCTGTATTTACGTATTTT--TCCT-C-CGACTGTAAGCC---ATACTGCC-----TCT--GAGA----GA--TGAACGCGAATGAAATT--TCT------G---------ACTA-TATTTT-TATTTTATTT-TA-CT-------------------GTAGa
gi|10 : AAGGGTCTATGCAATGCAA-TTCGA-TTTTCC----AGCAGAGTAAA-CACC-T-AATC-CA-ATT-A-AA-A---ATATACTGAAAATTT-G-A---CGA-AGTTAT-A-A-GCAGAA-TCAACGGAGATATTA-GCGAAAAACTCG--A--AAC--C-ACAC-CTG-AACGGATTTTTGA--AAAAG-TCGG---TTCT-AGC-GCCA--A-ATCGC-TG-TGACG-TCAC----GT-C-GTGTATATC--GCCA-TCTTGGATAG--AGAGAAAG-CGT-GTA-GATCAG-CTGATAA---T--TTTCGC--GATA-TTTAT--ATCATTTGTCTTTTG-AT--TT--GGTGCATT--TACATG--CT-ATAGGT--ATTT-TT-A-TTTAGTCGTGATCGTTGAAAG--TTTTCAGTCGTAGCTATA------GTATTC--G-TGATC-GGCATTGT--A-AATA-------------T--CA----T-ACGG----------TA--A--T--A-TA------TATTGGT-TTGATC-G-A-TGT--TG-AATGTACTTCTTTG------------GGAG-TTACAC-CC---ATAT--ACTTAACATT---CCCC-ATAACCAT-G-AGAA--T-TTTCCCAGCCTTGTG-AA--CATACt
gi|12 : AAGGGTCTATGCAATGCAA-TTCGA-TTTTCC----AGCAGAGTAAA-CACC-T-AATC-CA-ATT-A-AA-AC-TATA--CTGAAAATTT-G-A---CGA-AGTTAT-A-A-GCAGAA-TCAACGGAGATATTA-GCGAAAAACTCG--A--AAC--C-ACAC-CTG-AACGGATTTTTGA--AAAAG-TCGG---TTCT-AGC-GCCA--A-ATCGC-TG-TGACG-TCACGT--CG-T-GTATATT----GCCA-TCTTGGA---T-AGAAAGAA-AGC-GTG-TA-GAT-CAGCTGAT--AATTTTCGC----------GA--------TA---TTTATATCATTT----GTCTT--T---TG--TT-TTGG---------------TC----GTGATCGTTGAAAT--TTTCCAGTCG------TA------GTATTC--G-TGATC-TGCATTGT--ATAA-------------------A----A-ACCG----------TACGG--T--AATA------TAT
gi|14 : aAAGGGTCTATGCA-TGCAA-TTCGA-TTTTTA----AGCATAGTAAA-CACC-T-ATTCCAATA---A-AA-AC-TATA--CTGAAAATTT-G-A---CGA-AGAT---------------CAACGGAGATATTA-GCGAAAAACTC---G--AAA--CTACAC-CTG-AACAGATATTTGA--AAAAG-TCGG---TTCT-AGC-GCCA--A-ATCGC-TG-TGACG-TCAC----GT-C-GTGTATATC--GCCA-TCTTGGA---T-AGAGAGAA-AGC-GTG-TA-GAT-CAGTTGATATA--TTTTGC--GATA-TTTAT--A----TCA---TTTGTAT--TTTattgatttgat
gi|25 : aAAGGGTCTATGCAATGCAA-TTCGA-TTg
gi|15 : taTCTATGCAATGCAAATTCGA-TTTTCCA---GGCAGAGTAAA-CACC-T-AATC-CA-ATTTA-AACAT--ATATC-TGAAAATTT-GGA---CGACATATA----A-GCAGAA-TCAATGGAGATATTA-GCGAAAAACGCGACCGAAAC--C-ACAT-CTG-AACGGATTTT-GA--AAAAG-TCGG---TTTCTAGC-GCCA--A-ATCGCTTGTTGACG-TCA-----CG-T-CTGTGTATATCGCCA-TCTTGAG-A-T-AGAGA
gi|21 : TGCAATGAAA-TGCGATTTTTTT----GGTAGAAT-AAACATC-T-A-TC-AA-G---A-AA-
gi|16 : aggatatcaA-A---A-AA-ATCGAT--CCTGAAAATTT-T-ATTGCGA-TCGTACAT-GTACT--A-TTG---GAGATATTTGGGGTAA---TCA--C--AATTTC-ACAC-CTG-AACG-ACTTTT------AAA-CCGGGCTGTTTTGGT-GCGATTA-AT-GT-CG-TGACG-TCAC----taaacacttccgaaaaattg
gi|1 : taaaagatatctgcaaccccggtcatttgttttaaatttggagggttacagtttGAAAATTT-G-A---CGA-AGTTAT-A-A-GCAGAA-TCAAAGGAGATATTA-GCGAAAAACTC---GG-AAC--C-ACAC-CTG-AACGGATTTTTGA--AAAAG-TCGG---TTCTA-GC-GCCA--A-ATCGC-TG-TGACG-TCACGT--CG-TTATATC------GCCA-TCTTGA----TGAGAGAAAG-CGT-GTA-GAT----CAGCTGATA-A--TTTCGC--A-TATTTATATCATTGTCT----TTTGT----TTTG---GTGTC--TACATG--CTATATGGT--A-TT-TT-A-TTTAGTCGTGATCGTTGAA-G--TTTTCAGTCG------TA------GTATTC--G-TGATC-GGCATTGT--A-AATACG-----------TAATA----T-AC-------------------T--TTTG-------ATTTGA-T---TC-G-A-TGT--TG-AA-----------ATGTACTTCTTTGGGAG-TTACAC-CC---AAAT--ACTTAACATT---CCTC-ATAGCCATTG-AGAA--TTTTT-CCAGCCTTGTG-AA--CATAC-A-TACAAGACAGT-GACCGAAGCCTG-GT-GATAAT--TTGCTTC-AC-------------------TAC-----------------A-TATTTTAATCATTAAA--------ATTAT--------TTC-AT--ATTTACGTATTTT--T-CT-C-GGAGTGAAAC-C---ATACTGCC-----TCT--GAGAGATCGA--TGAA--CAGATGAAATT--TCTGTTGTAG---------ATTA-TATTTT-TATTTCA-TT-TC-AT-------------------GTAAGTACAGACATGTATAATA-TTCAGAGT----TGCA-AATTA--C-CACT--------C--------ACATA----TATAATG-AGT---AATTTT-A-TTTGTGGGC----GACCAAATTGTGAAAATCTTCT-CGC---CAACA-TGGCGAGTA-AAACT-T------AG---T------TTTT-AAAA-ATC-CGCTC-G---TT--TTTTGA-C-G-CTGC--A-TA-ACGTTTGTTTGTTGCCGAATG-T----------AATTCACATTTT-T---------AT---------G-------------------------------------------GTGCGTA-TTA-ATT----AGTAT--------A-ATTTTG-AAATGTTTTCTC-TCGAGTGAAGC-----TCAACTT-AGTATTT-----TAACATGTgaggtcaacatcgcc
gi|11 : TG-AACGGATTTTTGA--AAAAG-TCGG---TTCTA-GT-GCCA--A-ATCGC-TG-TGACG-TCACGTTGTG-T-ATATC------GCCA-TCTTGAATAG--AGAGAAAG-CGT-GTA-AATCAG-CTGATAA---T--TTTCGC----------GAT-ATT-TATA---TTTATGT--TTT-GGTGCATT--TACATG--CT-ATAGGT--A-TT-TTTA-TTTAGTCGTGATCGTTGAAAG--TTTTCAGTCG------TA------GTATTC--G-TGATC-GGCATTTT--A-AATACCGTAA-------TA-TA----T-ATTGATTTGATCGAT---G--TTGAATG------TACTTCT-T---TG-GGA-TGCG-TGGAA-----------A------------AAAG-TTACAC-CC---ATAT--ACTTAACATT---CCCC-ATAGCCATTG-AGAA--T-TTTTCCAGCCTTGTG-AA--CATACA--TACATGGCAGT-GGCTGAAACCTG-GT-GATAAT--GTGCTTT-AC-------------------TACATATTTTAATCATT---A-T--------------A--------ATTAT--------TTC-AT--ATTTACGTATTTT--T-CT-C-GGACTGAAAC-C---ATACTGCA-----TCT--GAGA----GA--agcatacgtatagacctatagggaatgtcaatctccaggaaaattactgcaggaatgtaaaattgttgaaaatgtgatacataaaaatgtatatatataaccttttcatgtaacagccaattaaaattaatcagatcgaatatttatattgtataccatgaaagtgtcttgcttacgtgtgactataaacgaagtcgggttagaaattgcagtttagtgaaaggtttatgaaaatgccataaaaaaaaatcaatatactgaaagttttatgaattatgatttttgaaattctggaataatatttcttttgcaaacaaataattatataattgtcacgatagatactagaatgttgcaagtatatgcgcatgtattttaaccgtacacttgtcacttagtgttttgcaatatacaatttaaaaatttccatgcagggaggtagaggaacactttctgcctgctgcacgatttccataggtctcagcatatgtggttacttttaacttttgttttgcagtaagcataacgtgtattttatagtaccatctaaatagagcgaaatttcgcaatttttgggatctgttttggaagtcatatgcacacattgaaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnctttctgggcggggttttaagttgatttatacaggtttagaaagttcaaacacat
gi|8 : --ATTGTTTG---TTTGTAT--TTCTAACATATT--TAAATGT-TT-TAAGAT--A-TTAAA-A-TTTA---GTGATCGTTGAAAG--TTTTCAGTTG------TA------GTATTC--G-TGATC-GGCATTGT--A-AAT--------------T--TA----T-ATCG----------T---GA-T--ATTGGTTTGATATTTCT-T---TCGG-A-CGTG-TG-AG-----------A------------AAAG-TTACACATTATAATAT--CCATAACATT---CA-------CCATGG-AGAA--TGTTT-CCAGCATTGTG-AA--CATACAA--ATAAGGCAGT-GGCTGAAGCCTG-GT-TATAAT--TTGCTTT-AC-------------------TACATATTTTAAACATT---A-T--------------A--------ATTAT--------TTC-ATGTATTTACGTATTTT--T-CT-C-CGACTGAAA--CCATATACTGCC-----TCTGCGAGATC--GA--TGAA--GGGATGGAATT--TCT------GATGTAGACTATTA-TACTTT-TATTTTA-TA-TT-CT-------------------GTAGGTACAGAC-----TTA-A-TTCAGGGT----TGCA-AATAA--C-CACTCGGCCACAC--------GCATA----T---GCG-AAT---AATTTT-A-TTTTTGGGC----GACCAAATTGTGAAAATCCTCTCATC---C-ACA-TGGCGTGTA-AAACT-T------AC---C------TTTT--AAA-ACC-CGCTC-G---TG--GTTTGA-C-G-CTGC--A-TT-ACGCTT--------------G-TTGCCAAATGAAATACACAATTT-T---------ATTTC-CA---GAA------A----TTTTTAATGTGAAAAGT-----------G-GTGCGTATTTACAT-------TGTATGTACAGT-ATTTTG-AACCGTT
gi|7 : T--TAAAGGCCTC-TAAGATTAA-TT-AA-AATTTA---GTGATCGTTGAAAG--TTTTCAGTCG------TA------GTATTT--G-TGATCCGGCATTGCTAA-AAT--------------T--TA----T-ACCG----------T---GA-T--ATTG------TATTGAT-T---T--G-ATCGTGCTG-AG-----------A------------AAAG-TTGCACATT---ATATTCCCATAACATT---CACCCAGAGCCATGATAGAA--T-TTTTCCACCAT-GTG-AAAACATACAAATATAGGGCAGT-GGCT-AACCCTG-TTATATACTCCTTGATTC-ACCA-----------------TAC-----------------A-T--------------ATTTTAAACATTATAATCTATTCTC-ATGTATTTACGTATTTT--T-CTACGCGACTGAAA--CC--ATACTGCCACAAATCT--GAGA----GAA-TGAA--CGAATGAAATTGTTCTT-----G---------ACTAATACTTT-TATTTTA-TTCTA-CTAGTAGGTACAGCCTCCGGAGTAGGTACAGAC-----TGA-AATTCAGGGT----TGCA-AATAA--C-CACTT-------C--------GCATA----T---GCG-AGT---AA-TTTTA-TTT-TGGGCCGCGAACCAAATTGTGAAAATCCTCTCGCC---C-ACA-TGGCGAATA-AAACT-T------ACCCTC------TTTTAAAAA-ATC-CGCCCGG---TTGGGTTTGATC-G-CTGC--ATTC-ACA-----------------GCT----------AATACACATTTTCT---------ATTTC-CA---GAA------ATCTTT------------AAATCTGCAAAACAAGTGTGCGTATTTACAATGTA
gi|5 : ATTC-GC-------------------TGC-----------------AAT--------------A--------ATAAA----------C-ATGTATTGTCACATTTTATT-CT-T-NNNNNNNNN--N---NNNNNNNN-----NNN--NNNN----GAATTGAA--CGGATGAAATT--TCT------G---------ACTA-T-CTTTATATTTTA-TT-TATCT-------------------GTAGGTA-AGAC-----TGA-A-TT-AGGGT----TGCACAATAA----CACT--------CG-------GCAAA----T---G-G-AGT---AA-TTT-ATTTTGTGGGG-GCGGACAATAATGTGAAAATCCTCTTCGC---C-ACA-TGG-GAAT--AAATT-T------AC---C------TTTT-AAAA-ATC-CG-CC-G---TC--GTTTGA---G--TCC--A-TT-AAA-----------------G-T----------CA-ATACATGTT-T---------ATTT--CA---GAATTTTTTA----TGCGAA-------AAGT-----------G-GTGCGTATTTAC-TTG------GCATGTAC-AAGATTTTGAAATCGTTTTCTC-TC--GTAAAGC-----TCGTGTTAAGAATTTA--G-TTACGTGTGAATATTTAACG-AGTCGGGTAAG-AATTG--TACCAATGCAAAAAAA---AAAA--AAAAAAAAAATCAGG-T-TTAGTGACAGAATTTATGAAAATTGGCCAC---C-----AAAATC-GTTTTA-TGAGAGTTTTATG-AGTTAATGATTAGGCCT-ATGAAGATTTTGA-A--T-ATATAATTTCTTTTGCAAAACAAAATAA-ATATATAATTGTCGCGATAGCTACC-GAAtgctaacagaattg
gi|17 : gaca-A-TGCAGGGTATGTTGCA-AATAA--C-CAGT--------T--------GCCCACTCTT---GCA-AATGAGAA-TAT-A-TTT-TGTGT-GCA-ACCAAAATATGAAAATCCTAT-TGC---CAACA-TGGTGTGTA-AAATT-T------AC---CGTAACTTTTC-CAAA-ATC-CACTT-G---CA--GTTTAA-C-A-TTAC--A-Tgaaaggttgcagtacctatttttacccggatttcaaccgtgccttgtcatttgtaggcctgaggttttcgaccacggtctacatag
gi|22 : -TTCAGGGT----TGCA-AATAA--C-CACT--------CGTCCACTTGCATA----T---GCG-AGT---AATTTT-A-TTTGTttgtttagaaggtttcaacttctga
gi|18 : ctAGGGT----TGCA-AATAA--C-CACT--------C--------GCAAA----T---GCG-AGT---AATTTT-A-TTTGTGGGC----GACCAGTTTATGAAAGTTCTCTCGCC---C-ACA-AGGCGAGTAAAAATT-TATCGTAAC---T------TTTC-TGGA-ATT-CGTTC-A---CA--GTTTGA-
gi|4 : GGGT----TGCA-AATAA--C-CACT--------C--------GC------------C----T---AA-TTT-A-TTTTTT-----C---CCAAATT-TGAAAATCCTCTAGTC---C-ACATTGGCGAGT--TGCCTAA------AA---C------TTTT-CAAA-ATC-GGGTC-G---TG--GTTTCA-CGG-CTGCCAA-TTAACGTTTTTTTGCCGAAT---G-T----------AATACACATTTC-CCCCCAAGAAATTTCACATGTGAA------------------------AAAT-----------GTGC-CGTATT---AT----CATTGTATGTGCAGA-ATTTTT-AACTGTTTTTCC-TC--atcaacttttacttgcactttcg
gi|18 : cCA-AATAAAAT-TACT--------C--------GCATT----T---GCG-AGT---GG--TT-A-TTTGaagtggaataatcagagacgtacataatattatagtacacacataattatacatgtatagcgaaagtcgatctcttagaaaattactgcaggaacgtaaaattgttgcaaatgtgtacttaaagatagatctataaatcaaaacttattttgtaatagtaaattaaattaatcagattgaatctttatattgtatgcatatgccgtttaattgtcttgcgccacgtgcgaaatataccgaagtcgggttagaaaattctaccccccaaaaatcagttttagtgaaaggtttatgaattatgattaatgaaattttggaattaatctttcttttgccaaagaaataatttatttaattgttgcgatatactagtatacgagaaggtggccgatcacatgcgcatctgtactagctcatgatctttccagctgattccatatcggaggtagaggaaaacttttctgcctgctgcacgattttcacgggtctcagcatatgcggggttacttttaacctttgttgcagtaagtgtaccgtnnnnnnnnnnnnnnnnnnnnnnnnnatcaaaatgt
gi|7 : agggttgA-AATAAAAT-TACT--------C--------GCATA----T---GCGAAGT---GG--TT-A-TTTGtgggcgaccagtttatgaaagttctctcgcccacaaggcgagtaaaaatttatcgtaacttttctggaattcgttcacagtttgaatcaacttttacttgcactttcg
gi|13 : ttaaaggcctctaagattaattaaaatttagtgatcgttgaaagttttcagtcgtagtatttgtgatccggcattgctaaaatttataccgtgatattgtattgatttgatcgtgctgagaaaagttgcacattatattcccataacattcacccagagccatgatagaatttttccaccatgtgaaaacatacaaatatagggcagtggctaaccctgttatatactccttgattcaccatacatattttaaacattataatctattctcatgtatttacgtatttttctacgcgactgaaaccatactgccacaaatctgagagaatgaacgaatgaaattgttcttgactaatacttttattttattctactagtaggtacagcctccggagtaggtacagactgaaattcagggttgGCGAAT--AAACT-T------AC---CGT----TTTT-AAAA-ATCGCGCCC-G---TC--TGTTGA-C-GGCTCC--A-TT-ACG-----------------T-T----------AATA-ACATTCT-T----------TTTC-CA---GAA------A----TTTTTAATGCGA-AAAA-----------GTGTGCGTATTTACATTGTA---TGTACAGAA-GA-ATTTGA-AGTCGTTTCTTCTTC--GTAAAGC-----TCGTGTT-AGAA-TT---G-TTACGTGGGAA-ATTtgggccgcgaaccaaattgtgaaaatcctctcgcccacatggcgaataaaacttaccctcttttaaaaaatccgcccggttgggtttgatcgctgcattcacagctaatacacattttctatttccagaaatctttaaatctgcaaaacaagtgtgcgtatttacaatgtatgctaacagaattg
gi|23 : ---GAA------A-----------------AAGT-----------G-GTGCGTATTTACAT-------TGTATGTACAGA-ATTTTG-AATCGagtcagtaacttcgagaaagtttggtgtgtgtatggagcagttcgggttagaaattgcttagccatgccaataaaaaaaaaaaaaaaaaaaatccatgttagtggaatccttgaatccacgttagagtggtttttaatggtatttttct
gi|4 : gcTTG-AATC--TTTATA-TT--GT-ATGCATATGCCGT-TTAATTGTCTTGCG-CCACGTGCGAA-ATATACCGAAGTCGGGTTAGAAAATTC-TACC--CCC--------------------CAAAAATCA-GTT-TTAGTGAAAG-GTTTATGAA
gi|1 : cgggttgcaaataaccactcgcctaatttattttttcccaaatttgaaaatcctctagtccacattggcgagttgcctaaaacttttcaaaatcgggtcgtggtttcacggctgccaattaacgtttttttgccgaatgtaatacacatttccccccaagaaatttcacatgtgaaaaatgtgccgtattatcattgtatgtgcagaatttttaactgtttttcctcaagtggaataatcagagacgtacataatattatagtacacacataattatacatgtatagcgaaagtcgatctcttagaaaattactgcaggaacgtaaaattgttgcaaatgtgtacttaaagatagatctataaatcaaaacttattttgtaatagtaaattaaattaatcagaTT---GCTTACGTGTGACTATA-AACGAAGTCGGGTTAGAAATTGC--------------------------------------A-G-T-TTAGTGAAAG-GTTTATGAAAAT--GCCATAAAA----AAAAATC-AATATACTGAAAGTTTTATGAA-TTA-TGATT----TT--TGAA-ATTCTGGAA--TAATA---TTTCTTTTGC-AAAC-AAATAA-TTATATAATTGTCACGATAGATACTAGAATttatgattaatgaaattttggaattaatctttcttttgccaaagaaataatttatttaattgttgcgatatactagtatacgagaaggtggccgatcacatgcgcatctgtactagctcatgatctttccagctgattccatatcggaggtagaggaaaacttttctgcctgctgcacgattttcacgggtctcagcatatgcggggttacttttaacctttgttgcagtaagtgtaccgtnnnnnnnnnnnnnnnnnnnnnnnnnatcaaaatgt
gi|13 : gaaaatttgacgaagttataagcagaatcaaaggagatattagcgaaaaactcggaaccacacctgaacggatttttgaaaaagtcggttctagcgccaaatcgctgtgacgtcacgtcgttatatcgccatcttgatgagagaaagcgtgtagatcagctgataatttcgcatatttatatcattgtcttttgttttggtgtctacatgctatatggtattttatttagtcgtgatcgttgaagttttcagtcgtagtattcgtgatcggcattgtaaatacgtaatatacttttgatttgattcgatgttgaaatgtacttctttgggagttacacccaaatacttaacattcctcatagccattgagaatttttccagccttgtgaacatacatacaagacagtgaccgaagcctggtgataatttgcttcactacatattttaatcattaaaattatttcatatttacgtatttttctcggagtgaaaccatactgcctctgagagatcgatgaacagatgaaatttctgttgtagattatatttttatttcatttcatgtaagtacagacatgtataatattcagagttgcaaattaccactcacatatataatgagtaattttatttgtgggcgaccaaattgtgaaaatcttctcgccaacatggcgagtaaaacttagtttttaaaaatccgctcgttttttgacgctgcataacgtttgtttgttgccgaatgtaattcacatttttatggtgcgtattaattagtataattttgaaatgttttctctcgagtgaagctcaacttagtattttaacatgtagcatacgtatagacctatagggaatgtcaatctccaggaaaattactgcaggaatgtaaaattgttgaaaatgtgatacataaaaatgtatatatataaccttttcatgtaacagccaattaaaattaatcagatcgaatatttatattgtataccatgaaagtgtcTCGGGTTAGAAATTGCTTAGCCATGCCAATAAAAAAAAAA--AAAAAAAAAATCC-A-TGTTAGTGGAAttgcaagtatatgcgcatgtattttaaccgtacacttgtcacttagtgttttgcaatatacaatttaaaaatttccatgcagggaggtagaggaacactttctgcctgctgcacgatttccataggtctcagcatatgtggttacttttaacttttgttttgcagtaagcataacgtgtattttatagtaccatctaaatagagcgaaatttcgcaatttttgggatctgttttggaagtcatatgcacacattgaaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnctttctgggcggggttttaagttgatttatacaggtttagaaagttcaaacacat
gi|9 : gcgaataaacttaccgtttttaaaaatcgcgcccgtctgttgacggctccattacgttaataacattctttttccagaaatttttaatgcgaaaaagtgtgcgtatttacattgtatgtacagaagaatttgaagtcgtttcttcttcgtaaagctcgtgttagaattgttacgtgggaaattagtcagtaacttcgagaaagtttggtgtgtgtatggagcagtCAATAT----------AAATTTAAAAAAGAAATCT-G-T-TTAGTGAAAG-GTT-AT--AAAT--GCCAC---C----AATAATC-GATTTACTGAAAATTTCATGAA-TTATTAAT---GATTAATGAA---TTTGGAA--TAA-ATATTT--CTTTGCTAAAC-AGAT-A-TTTTATAATTGTCGCGATAGATA-C-GAAtccttgaatccacgttagagtggtttttaatggtatttttct
gi|4 : TTA-GAAAAT--TCTAC---CCCCCAAAAATCAGTTTTAGTGAAAGGTTTATG-A-------ATTATGATTAATGAA-ATTTTGG-AATTAAT---CTTTCTTTTGCCAAAG-AAATAATTTATTTAATTGTTGCGATAaggttgccaggtaccttatgtgcatgaatgttttttaaccgtggccttgtcatttaatttgcaatacatctttcccagaggctagaggaaactttctgcctgctgcacgattttcatgggtctcatgacattatacaattttttcgtctgttttggaattcatatgcgccacataataattgaataaattaaatatctcatttcttattaatagtaaaatcaacgcattcttatattatgatgacatctagtttattgtttccaacttgatcatgtttactttacgtgtcaaaactcttggaagagccattttcgaggcgcgactattacttattatcatgctctcaggcttaaaaaggttgcggttgtttgacctaattctatatattagcaattgtcaa
3 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|19 ): TAGCCGAACGAACAGGATGTCATGGCCGAGTACCTATTTAAACCCGTAGATAAAAACCGTGGGTTGCACTTGTCATTGTAGGCCGAGGTTTTCGACCCGACGGTCTAACCTCAGGTGA
Unaligned ( gi|20 ): ATAGAAGTGTATTCTCAGATTCATTTGAACTCATGAATTTGAAGTGATCATCAGAACAATTTTGATTAGTTTATTTATAA
Unaligned ( gi|24 ): TGCAATTCGATTTTCCAGCAGAGTAAACACCTAATCCAAT
Alignments
lowQualScore : 11111111111111111111111111 111111111111111111111111111111111111
lowQualScore : 1111 222222222222 111 11 222222 22222 2222 11111 1 222 33333333333333 1111 222222222222222222222 1 111111 11111111 777777777777777777777777777777777777777777777777777777777777777 11 1 11 444444444444444444444444444 2 11111 11 1 2 11 1111 111111 22222222222222222222222222 1 11111 1111 1111 444444444444444444 5555555555555555555555555555 22222222222222222 1 11111111 111111 2222222222222222222 000000000000000000000000000000000000 888888888888888888888888888888888888888 222222222 11 1 111 3333333 22222222222 11 222222222 2222 11111 1
lowQualScore : 4 4 0 4 3333 4 66 4 5 4 999 111111111111 8 777 66 222 2 4 4 9999 66 66 4 4 55 55 77 4 4 55 4 4 4 4 111111 4 1 77777 4 3 8888 9999 2 00000 1 5 0 2 2 333 77777777777777 33 0 4 77 4 2222 66 2 111111111111111111111 2 1 66 222222 66666666 2 4 4 4 555555555555555555555555555555555555555555555555555555555555555 66 00 66 5 66 77 5 5 22 222222222222222222222222222 5 1 5 33333 1 00 888 0 5 66 5 0 11 3333 5 3 5 66 77 666666 4 66 88888888888888888888888888 5 5 5 55 66 5 0 66 5 66 22222 66 7777 5 2222 77 77 5 777777777777777777 5 5 5 5 5 5 2 8888888888888888888888888888 8888 4 8 77777777777777777 0 8888 777 777 2 8 4 5 88888888 4 22 66 4 000000 0 5555555555555555555 77 4 4 888 4 4 666 4 8 66 555 222222222222222222222222222222222222 0 5 3 5 222222222222222222222222222222222222222 4 666666666 66 66 5 5 0 6 88 3 0 1 88 666 6 0 11 3 8 0 2222222 3 0 99999999999 99 777 6 11 666666666 8 1 5 0 8 8 5 1 0000 6 88 0 8 0 99999 0 8 8 0 8 3 2 0
lowQualScore : . . . . .... . .. . . . ... ............ . ... .. ... . . . .... .. .. . . .. .. .. . . .. . . . . ...... . . ..... . . .... .... . ..... . . . . . ... .............. .. . . .. . .... .. . ..................... . . .. ...... ........ . . . . ............................................................... .. .. .. . .. .. . . .. ........................... . . . ..... . .. ... . . .. . . .. .... . . . .. .. ...... . .. .......................... . . . .. .. . . .. . .. ..... .. .... . .... .. .. . .................. . . . . . . . ............................ .... . . ................. . .... ... ... . . . . ........ . .. .. . ...... . ................... .. . . ... . . ... . . .. ... .................................... . . . . ....................................... . ......... .. .. . . . . .. . . . .. ... . . .. . . . ....... . . ........... .. ... . .. ......... . . . . . . . . .... . .. . . . ..... . . . . . . . .
lowQualScore : 4 0 6 0 9999 4 11 4 3 3 000 777777777777 0 888 44 444 6 4 4 4444 77 11 4 0 55 55 99 0 0 55 0 0 0 0 333333 4 0 88888 4 7 8888 4444 8 55555 0 0 1 8 2 888 00000000000000 66 9 4 11 4 6666 11 6 666666666666666666666 2 9 11 888888 11111111 9 4 4 4 333333333333333333333333333333333333333333333333333333333333333 11 66 99 0 99 55 0 0 55 444444444444444444444444444 0 6 0 88888 0 99 888 8 0 99 0 0 99 7777 7 0 7 77 99 444444 2 99 66666666666666666666666666 0 0 0 88 99 0 0 00 0 99 55555 99 5555 0 1111 99 99 7 000000000000000000 7 7 7 7 7 7 5 4444444444444444444444444444 5555 0 0 11111111111111111 1 5555 000 000 0 0 0 0 88888888 4 00 11 4 888888 8 2222222222222222222 33 0 0 444 0 0 555 0 9 11 333 000000000000000000000000000000000000 4 0 2 0 222222222222222222222222222222222222222 4 000000000 11 11 0 0 2 7 33 7 6 0 88 000 7 8 88 2 0 8 5555555 2 2 22222222222 22 555 7 00 888888888 0 0 0 8 0 0 0 0 2222 0 88 8 0 8 44444 8 8 0 8 0 0 5 0
consensus : NAAGGGTCT-ATGCAATGCAA-TTCGA-TTTTCC----GGCAGAGTAAA-CA--CCT-ANTCCAATTAAAAT-NAT--A-T-CCTGAAAATTT-GA---CGAAGNTAC-AGGCNGAA-TCAACGGAGATATTA-GCGAAAAAC----TCGAAAC--CACAC-CTGAACGGAT-TTTTGA--AAAAGTC--GGTTCTAAG-C-GCCA--A-ATCGC-TG-TGACG-TCACG-C-G-CGT-GTAT--N--GCCATC-TTGGATAG-AGAGA----AAGCG-TGTAGATCAG-CNGNTGATA-TTTCGCGAT-A-TTTG--A--ATTGTTTGT-TTGTA-TTT-T-GACGTATT--TANATGCT-T--AAGGT--A-TT-NN-A-TTTAGTCGTGATCGTTGAAAG--TTTTCAGTCG------TAGTA--------TTCGTGAT-CGGCATTG-TA-AATAC------------T------TA----T-ACCG----------T---G-T--ANTG------T--AT--TT--CT-T--TC-GGA-CGTG-TG-AG-----------A------------AAAG-TTACACACCATA-T--A--CNTAACATTC-CCCAT---AGCCATNG-AGAA--T-TTTTCCAGCCTTGTG--AACATAC-AA-TACAAGGCAGT-GGCTGAANCCTG-GT-TATAAT--TTG------CTTCAC--TACA---T---T---T------TAA-CATTATAAT-TATT-TC-ATGTATTTACGTATTTT--T-CT-C-CGACTG-AAACCATA--CTGCC-----TCTG--AGA----G-AT----GAA--CGGATGAAAT--TTC-TG-------AC---------T-ATACTTT-TATTTTA-TT-TA-CT-GTAGGTACAG--------------ACA---TG----A-ATTCAGGGT----TGCA-AATAACCAC-TC--------G--------CATA----TGC---GAGT---AA-TTT-A-TTTGTGGG-CGCG-ACCAA-ATTGTGAAAATCCTCTCGCCCAC--AT-GGCGAGT-----AAAACTT-------AC---C------TTTT-AAAA-ATC-CGC-T-C-G-T--NGTTTGA-CG-CTGC--ATT-A-CGTTT-T-----------T---------G-T-------AATACACATTTT-TATTTCCA-GAAAT-TTT--------A-----AA---GT-------G-----TGTGC-GTATTTACATTGT-----GTATGT--ACAGAAT--TTTG-AA-TCGTTTTCTC-TC--GTGAAGCTCGTGTTAAGAAT-TT-G-TTACGTGT-GAATATNTAACGAAGT-CGGGTTAGAAATTGCT-------ACCAATGC--AAAAAAAAAAAAAAAAAAAT--CA-G-TTTAGTGAAAG-GTTTATGAAAAT--GCCAC---C----AAAAATC-GTTTTACTGAAAGTTTTATGAATT-A-TGATTAGG-TTAATGAA-ATTTTGGAA-TAATATA-TTTCTTTTGCNAAAC-AAATAA-TTATATAATTGTCGCGATAGNTACC-GAACG
Reference ( family-926 ) : NAAGGGTCT-ATGCAATGCAA-TTCGA-TTTTCC----GGCAGAGTAAA-CA--CCT-ANTCAAATTAAAAT-NAT--A-T-CCTGAAAATTT-GA---CGAAGNTAC-NGGCNGAA-TCAACGGAGATATTA-GCGAAAAAC----TCGNAAC--CACAC-CTGAACGGAT-TTTTGA--AAAAGTC--GGTTCTAAG-C-GCCA--A-ATCGC-TG-TGACG-TCACG-C-G-CGT-GTNT--A--GCCATC-TTGGA-AGTAGAGA----AAGNG-CGTGGATNAG-CAGNTGATA-TTTCGCG-T-A-TTTG--A--ATTGTTTGT-TTGTA-TTT-T-AACGTATT--TANATGCT-T--AAGGT--A-TT-NN-A-TTTAGTCGTGATCGTTGAAAG--TTTTCAGTCG------TAGTA--------TTCGTGAT-CGGCATTG-TA-AATAC------------T------TA----T-ACCG----------T---G-T--ANTG------T--AT--TT--CT-T--TC-G-A-CGTG-TG-AG-----------A------------AAAG-TTACACACCATA-T--A--CNTAACATTC-NCCAT---AGCCATNG-AGAA--T-TTT-CCAGCCTTGTG--AACATAC-AA-TACAAGGCAGT-GGCTGAAGCCTG-GT-NATAAT--TTG------CTTCAC--TACA-------T----------TA-----TATAAT-TATT-TC-ATGTATTTACGTATTTT--T-CT-C-NGACTG-AAACCATA--CTGCC-----TCTG--AGA----G-AT----GAA--CGGATGAAAT--TTC-TG-------AC---------T-ATACTTT-TATTTTA-TT-TA-CT-GTAGGTACAG--------------ACA---TG----A-ATTCAGGGT----TGCA-AATAACCAC-TC--------G--------CATA----TGC---GAGT---AA-TTT-A-TTTGTGGG-CGCG-ACCAA-ATTGTGAAAATCCTCTCNNCCAC--AT-GGCGAGT-----AAAACTT-------AC---C------TTTT-AAAA-ATC-CGC-T-C-G-T--NGTTTGA-CG-CTGC--ATT-A-CGTTT-T-----------T---------G-T-------AATACACATTTT-TATTTCCA-GAAAT-TTT--------A-----AA---GT-------G-----TGTGC-GTATTTACATTGT-----GTATGT--ACAGAAT--TTTG-AA-TCGTTTTCTC-TC--GTGAAGCTCGTGTTAAGNAT-TT-G-TTACGTGT-GAATATNTAACGAAGT-CGGGTTAGAAATTGCT-------ACCAATGC--AAAAAAAAAAAAAAAAAAAT--CA-G-TTTAGTGAAAG-GTTTATGAAAAT--GCCAC---C----AAAAATC-GNTTTACTGAAAGTTTTATGAATT-A-TGATTAGA-TTAATGAA-ATTTTGGAA-TAATATANTTTCTTTTGCNAAAC-AAATAA-TTATATAATTGTCGCGATAGATACC-GAATG
gi|1 : GAAAATTT-GA---CGAAGTTAT-AAGCAGAA-TCAAAGGAGATATTA-GCGAAAAAC----TCGGAAC--CACAC-CTGAACGGAT-TTTTGA--AAAAGTC--GGTTCTA-G-C-GCCA--A-ATCGC-TG-TGACG-TCACG-T---CGTTATAT--C--GCCATC-TTG-A-TG-AGAGA----AAGCG-TGTAGATCAG-C---TGATAATTTCGCA-T-A-TTTAT-ATCATTGTCT-T-TTGT---TT-T-G--GTGTC--TACATGCTAT--ATGGT--A-TT-TT-A-TTTAGTCGTGATCGTTGAA-G--TTTTCAGTCG------TAGTA--------TTCGTGAT-CGGCATTG-TA-AATAC------------G------TA---------A----------T---A-T--ACTT------TTGAT--TT--GA-T--TC-G-A-TGT--TG-AA-----------ATGTACTTCTTTGGGAG-TTACAC-CCAAA-T--A--CTTAACATTC-CTCAT---AGCCATTG-AGAA--T-TTTTCCAGCCTTGTG--AACATAC-A--TACAAGACAGT-GACCGAAGCCTG-GT-GATAAT--TTG------CTTCAC--TACA-------TATTT------TAATCATTAAAAT-TATT-TC-AT--ATTTACGTATTTT--T-CT-C-GGAGTG-AAACCATA--CTGCC-----TCTG--AGA----G-ATCGATGAA--CAGATGAAAT--TTC-TGTTGTAG-AT---------T-ATATTTT-TATTTCA-TT-TC-AT-GTAAGTACAG--------------ACA---TGTATAATATTCAGAGT----TGCA-AATTACCAC-TC--------A--------CATA----TATAATGAGT---AA-TTTTA-TTTGTGGG-CG---ACCAA-ATTGTGAAAATCTTCTCGCCAAC--AT-GGCGAGT-----AAAACTT-------AG---T------TTTT-AAAA-ATC-CGC-T-C-G-T--TTTTTGA-CG-CTGC--ATA-A-CGTTTGTTTGTTGCCGAAT---------G-T-------AATTCACATTTT-TAT------G-------------------------------------------GTGC-GTA-TTA-ATTA------GTAT--------AAT--TTTG-AA-ATGTTTTCTC-TCGAGTGAAGCTCAACTT-AGTAT-TT---TAACATGTAGCATACGTA
gi|1 : AAGTGTCTT-GCTTACGTGT-GACTATA-AACGAAGT-CGGGTTAGAAATTGCtagacctatagggaatgtcaatctccaggaaaattactgcaggaatgtaaaattgttgaaaatgtgatacataaaaatgtatatatataaccttttcatgtaacagccaattaaaattaatcagatcgaatatttatattgtataccatgaaagtgtcttgcttacgtgtgactataaacgaagtcgggttagaaattgcagtttagtgaaaggtttatgaaaatgccataaaaaaaaatcaatatactgaaagttttatgaattatgatttttgaaattctggaataatatttcttttgcaaacaaataattatataattgtcacgatagatactagaatgttgcaagtatatgcgcatgtattttaaccgtacacttgtcacttagtgttttgcaatatacaatttaaaaatttccatgcagggaggtagaggaacactttctgcctgctgcacgatttccataggtctcagcatatgtggttacttttaacttttgttttgcagtaagcataacgtgtattttatagtaccatctaaatagagcgaaatttcgcaatttttgggatctgttttggaagtcatatgcacacattgaaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnctttctgggcggggttttaagttgatttatacaggtttagaaagttcaaacacat
gi|1 : gaaaatttgacgaagttataagcagaatcaaaggagatattagcgaaaaactcggaaccacacctgaacggatttttgaaaaagtcggttctagcgccaaatcgctgtgacgtcacgtcgttatatcgccatcttgatgagagaaagcgtgtagatcagctgataatttcgcatatttatatcattgtcttttgttttggtgtctacatgctatatggtattttatttagtcgtgatcgttgaagttttcagtcgtagtattcgtgatcggcattgtaaatacgtaatatacttttgatttgattcgatgttgaaatgtacttctttgggagttacacccaaatacttaacattcctcatagccattgagaatttttccagccttgtgaacatacatacaagacagtgaccgaagcctggtgataatttgcttcactacatattttaatcattaaaattatttcatatttacgtatttttctcggagtgaaaccatactgcctctgagagatcgatgaacagatgaaatttctgttgtagattatatttttatttcatttcatgtaagtacagacatgtataatattcagagttgcaaattaccactcacatatataatgagtaattttatttgtgggcgaccaaattgtgaaaatcttctcgccaacatggcgagtaaaacttagtttttaaaaatccgctcgttttttgacgctgcataacgtttgtttgttgccgaatgtaattcacatttttatggtgcgtattaattagtataattttgaaatgttttctctcgagtgaagctcaacttagtattttaacatgtagcatacgtatagacctatagggaatgtcaatctccaggaaaattactgcaggaatgtaaaattgttgaaaatgtgatacataaaaatgtatatatataaccttttcatgtaacagccaattaaaattaatcagatcgaatatttatattgtataccatgaAGAAATTGCA-G-TTTAGTGAAAG-GTTTATGAAAAT--GCCATAAAA----AAAAATC-AATATACTGAAAGTTTTATGAATT-A-TGATT----TT--TGAA-ATTCTGGAA-TAATA---TTTCTTTTGC-AAAC-AAATAA-TTATATAATTGTCACGATAGATACTAGAATGagtttagtgaaaggtttatgaaaatgccataaaaaaaaatcaatatactgaaagttttatgaattatgatttttgaaattctggaataatatttcttttgcaaacaaataattatataattgtcacgatagatactagaatgttgcaagtatatgcgcatgtattttaaccgtacacttgtcacttagtgttttgcaatatacaatttaaaaatttccatgcagggaggtagaggaacactttctgcctgctgcacgatttccataggtctcagcatatgtggttacttttaacttttgttttgcagtaagcataacgtgtattttatagtaccatctaaatagagcgaaatttcgcaatttttgggatctgttttggaagtcatatgcacacattgaaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnctttctgggcggggttttaagttgatttatacaggtttagaaagttcaaacacat
gi|10 : gaaaatttgacgaagttataagcagaatcaaaggagatattagcgaaaaactcggaaccacacctgaacggatttttgaaaaagtcggttctagcgccaaatcgctgtgacgtcacgtcgttatatcgccatcttgatgagagaaagcgtgtagatcagctgataatttcgcatatttatatcattgtcttttgttttggtgtctacatgctatatggtattttatttagtcgtgatcgttgaagttttcagtcgtagtattcgtgatcggcattgtaaatacgtaatatacttttgatttgattcgatgttgaaatgtacttctttgggagttacacccaaatacttaacattcctcatagccattgagaatttttccagccttgtgaacatacatacaagacagtgaccgaagcctggtgataatttgcttcactacatattttaatcattaaaattatttcatatttacgtatttttctcggagtgaaaccatactgcctctgagagatcgatgaacagatgaaatttctgttgtagattatatttttatttcatttcatgtaagtacagacatgtataatattcagagttgcaaattaccactcacatatataatgagtaattttatttgtgggcgaccaaattgtgaaaatcttctcgccaacatggcgagtaaaacttagtttttaaaaatccgctcgttttttgacgctgcataacgtttgtttgttgccgaatgtaattcacatttttatggtgcgtattaattagtataattttgaaatgttttctctcgagtgaagctcaacttagtattttaacatgtagcatacgtatagacctatagggaatgtcaatctccaggaaaattactgcaggaatgtaaaattgttgaaaatgtgatacataaaaatgtatatatataaccttttcatgtaacagccaattaaaattaatcagatcgaatatttatattgtataccatgaaagtgtcttgcttacgtgtgactataaacgaagtcgggttAAGGGTCT-ATGCAATGCAA-TTCGA-TTTTCC----AGCAGAGTAAA-CA--CCT-AATCCAATTAAAA---AT--A-T-ACTGAAAATTT-GA---CGAAGTTAT-AAGCAGAA-TCAACGGAGATATTA-GCGAAAAAC----TCGAAAC--CACAC-CTGAACGGAT-TTTTGA--AAAAGTC--GGTTCT-AG-C-GCCA--A-ATCGC-TG-TGACG-TCACGTC-G-TGT-ATAT--C--GCCATC-TTGGATAG-AGAGA----AAGCG-TGTAGATCAG-CTGATAAT--TTTCGCGAT-A-TTTA--T--ATCATTTGTCTTTTG-ATT-T-GGTGCATT--TACATGCT-A--TAGGT--ATTT-TT-A-TTTAGTCGTGATCGTTGAAAG--TTTTCAGTCGTAGCTATAGTA--------TTCGTGAT-CGGCATTG-TA-AATA-------------T------CA----T-A-CG--------------G-T--AATA------T--ATA-TTGGTT-TGATC-G-A-TGT--TG-AATGTACTTCTTTG------------GGAG-TTACAC-CCATA-T--A--CTTAACATTC-CCCAT---AACCAT-G-AGAA--T-TTTCCCAGCCTTGTG--AACATAC-ttgcaagtatatgcgcatgtattttaaccgtacacttgtcacttagtgttttgcaatatacaatttaaaaatttccatgcagggaggtagaggaacactttctgcctgctgcacgatttccataggtctcagcatatgtggttacttttaacttttgttttgcagtaagcataacgtgtattttatagtaccatctaaatagagcgaaatttcgcaatttttgggatctgttttggaagtcatatgcacacattgaaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnctttctgggcggggttttaagttgatttatacaggtttagaaagttcaaacacat
gi|11 : TGAACGGAT-TTTTGA--AAAAGTC--GGTTCTA-G-T-GCCA--A-ATCGC-TG-TGACG-TCACG-TTG-TGT-ATAT--C--GCCATC-TTGAATAG-AGAGA----AAGCG-TGTAAATCAG-CTGATAAT--TTTCGCGAT-A-TTTA-----------TAT-TTATG-TTT-T-GGTGCATT--TACATGCT-A--TAGGT--A-TT-TTTA-TTTAGTCGTGATCGTTGAAAG--TTTTCAGTCG------TAGTA--------TTCGTGAT-CGGCATTT-TA-AATAC------------CGTAATATA----T-ATTGATTTGATCGAT---G-TTGAATG------T--AC--TT--CT-T--TG-GGA-TGCG-TGGAA-----------A------------AAAG-TTACAC-CCATA-T--A--CTTAACATTC-CCCAT---AGCCATTG-AGAA--T-TTTTCCAGCCTTGTG--AACATAC-A--TACATGGCAGT-GGCTGAAACCTG-GT-GATAAT--GTG------CTTTAC--TACATATT---T----------TAATCATTATAAT-TATT-TC-A--TATTTACGTATTTT--T-CT-C-GGACTG-AAACCATA--CTGCA-----TCTG--AGA----G-A
gi|12 : AAGGGTCT-ATGCAATGCAA-TTCGA-TTTTCC----AGCAGAGTAAA-CA--CCT-AATCCAATTAAAAC-TAT--A----CTGAAAATTT-GA---CGAAGTTAT-AAGCAGAA-TCAACGGAGATATTA-GCGAAAAAC----TCGAAAC--CACAC-CTGAACGGAT-TTTTGA--AAAAGTC--GGTTCTA-G-C-GCCA--A-ATCGC-TG-TGACG-TCACG-T---CGT-GTAT--ATTGCCATC-TTGGATAG-AAAGA----AAGCG-TGTAGATCAG-CTGATAAT--TTTCGCG--------------AT-----AT-TTATA-TC---------ATT--TGT---CT-T-----------TT-GT---TTTGGTCGTGATCGTTGAAAT--TTTCCAGTCG------TAGTA--------TTCGTGAT-CTGCATTG-TATAA-----------------------A----A-ACCG----------TACGG-T--AATA------T--AT--
gi|13 : aGCGAAT-----AAA-CTT-------AC---CGT----TTTT-AAAA-ATCGCGC-C-C-G-T--CTGTTGA-CGGCTCC--ATT-A-CGTT----------------------------------AATA-ACATTCT-T-TTTCCA-GAAAT-TTTTAATGCG-A-----AA---AA-------G-----TGTGC-GTATTTACAT--T-----GTATGT--ACAGAAGAATTTG-AAGTCGTTTCTTCTTC--GTAAAGCTCGTGTT-AGAA--TT-G-TTACGTGG-GAAattgatttgat
gi|13 : AGTTCGGGTTAGAAATTGCTTAGCCATGCCAATAA--AAAAAAAAAAAAAAAAAATC--CA-T-GTTAGTGGAAattagtcagtaacttcgagaaagtttggtgtgtgtatggagcagttcgggttagaaattgcttagccatgccaataaaaaaaaaaaaaaaaaaaatccatgttagtggaatccttgaatccacgttagagtggtttttaatggtatttttct
gi|14 : gcgaataaacttaccgtttttaaaaatcgcgcccgtctgttgacggctccattacgttaataacattctttttccagaaatttttaatgcgaaaaagtgtgcgtatttacattgtatgtacagaagaatttgaagtcgtttcttcttcgtaaagctcgtgttagaattgttacgtgggaaattagtcagtaacttcgagaaagtttggtgtgtgtatggagcAAGGGTCT-ATGCA-TGCAA-TTCGA-TTTTTA----AGCATAGTAAA-CA--CCT-ATTCCAATAAAAAC-TAT--A----CTGAAAATTT-GA---CGAAG------------A-TCAACGGAGATATTA-GCGAAAAAC----TCGAAAC--TACAC-CTGAACAGAT-ATTTGA--AAAAGTC--GGTTCT-AG-C-GCCA--A-ATCGC-TG-TGACG-TCACGTC-G-TGT-ATAT--C--GCCATC-TTGGATAG-AGAGA----AAGCG-TGTAGATCAG-TTGAT-ATA-TTTTGCGAT-A-TTTA--T--A----TCAT-TTGTA-TTT-T-tccttgaatccacgttagagtggtttttaatggtatttttct
gi|15 : aTCT-ATGCAATGCAAATTCGA-TTTTCCA---GGCAGAGTAAA-CA--CCT-AATCCAATTTAAA--CAT--A-TATCTGAAAATTTGGA---CG-ACATAT-AAGCAGAA-TCAATGGAGATATTA-GCGAAAAACGCGACCGAAAC--CACAT-CTGAACGGA--TTTTGA--AAAAGTC--GGTTTCTAG-C-GCCA--A-ATCGCTTGTTGACG-TCACG-T-C-TGT-GTAT--ATCGCCATC-TT-GA-GATAGAGA----g
gi|16 : TTAAAA--AATCGA-T-CCTGAAAATTT-TATTGCGATCGTAC-A---TGTA-CTATTGGAGATATTT-GGGGTAA------TCACAATTTCACAC-CTGAACG-AC-TTTTAA--ACCGGGC--TGTTTTG-G-T-GCGATTA-AT-GT-CG-TGACG-TCACG-
gi|17 : taaaagatatctgcaaccccggtcatttgttttaaatttggagggttacagt-ATGCAGGGTATGTTGCA-AATAACCAG-TT--------G--------CCCACTCTTGC---AAATGAGAA-TAT-A-TTT-TGTG-TGCA-ACCAA-AATATGAAAATCCTATTGCCAAC--AT-GGTGTGT-----AAAATTT-------AC---CGTAACTTTTC-CAAA-ATC-CAC-T-T-G-C--AGTTTAA-CA-TTAC--ATT---TGTTT-aggtcaacatcgcc
gi|18 : AGGGT----TGCA-AATAACCAC-TC--------G--------CAAA----TGC---GAGT---AATTTT-A-TTTGTGG---GCG-ACCAG-TTTATGAAAGTTCTCTCGCCCAC--AA-GGCGAGT-----AAAAATTTATCGTAAC---T------TTTC-TGGA-ATT-CGT-T-C-A-C--AGTTTGA-agaaggtttcaacttctga
gi|2 : AAAGGTCT-GTGCAATGCAA-TGCTA-TTTTTT----GATAAAATAAAATA--TCT-ACTCAAA--AAAAT-GAT--G-T-CCTGAAAATTT-GA---CGAAGATAC-TGACTGAA-TTAACAGAGATATTACGCGAAAAAC----TC-CAAT--CACAC-CTGAACGTAT-TTTTGA--AAAAGCC--GGGTTTAAG-C-GCCA--A-ATCGC-TG-TGACG-TCAC--C-G-CAT-GTTTTGA--GCCATA-TCGAA-AGTAGAAA----AACAG-TACGAATGAG-CAGTTGA-A-TTTCGCT-T-AGTTTG--A--ATTGTTTGT-TTGTA-TTT-TCAACGTATT--TAAATGTT-T--AAGAT--A-TT-AA-A-TTT----GTGATCGTTGAAAG--TTTTCAGTCG------TAGTA--------TT-GTGAT-CGGCACTG-TA-AAT--------------T------TA----T-ACCG----------T---G-T--ATTG------T--AT--TT--CT-T--TC-G-A-CGTG-TG-AG-----------A------------AAAG-TTGCAC-TTATA-T--C--CATAACATTC-ACTAG---AGCCATGG-AGAA--T-TTT-CCAGCATTGTG--AACATAC-AA-TATAAGGCAGT-GACTGAACCCTG-GT-TATAAT--TTG------ATTTAC--TACA-------T--------------------AAT-TATT-TC-ATGCATTTACGTATTTT--T-CT-C-CGACTG-AAAC-ATA--TTGCC-----TCTG--AGA----G-AT----GAA--CGGATGAAAT--TTC-TG-------AC---------T-ATACTTT-TATTTTA-TT-TA-CT-GTAGGTACAG--------------AC----TG----A-ATTCAGGGT----TGCA-AATAACCAC-TC--------G--------CATA----TGC---GAGT---AA-TTT-A-TTTGTGGG-CGCGGACCAA-ATTGTGAAAATCCTCTCCGCCAC--AT-GGCGAAT-----AAA-CTT-------AC---C------TTTT-AAAA-ATC-CGC-C-C-G-T--CGTTTGA-CG-CTGC--ATC-A-CA--------------------------G-T-------AATACACATTTT-TATTTCCA-GAAAT------------------AA---GT-------G-----TGTGC-GTATTTACATTGTACAGTGTATGT--AC-GAAT--TTTG-AA-TCGTTTTCTC-TC--GT-AAGCTCGTGTTAAGAAT-TT-G-TTACGTGT-GAATATTTAACGAAGT-CGGGTTAGAAATTGCT-------ACCAATGC--AAAA-----AAAAAAAAAAT--CA-G-TTTAGTGAAAG-ATTTATGAAAAT--GCCAC---C----AAAAATC-GTTTTACTGAGAGTTTTATG-ACT-ATTGATTAGGCCTAATGAA-ATTTTGG-A-TAATATATTTTCTTTTGCAAAAC-AAATAA-CTATATAATTGTCGCGATAGCTACC-GAACGatcaacttttacttgcactttcg
gi|21 : tAGGATATCATGCAATGAAA-TGCGATTTTTTT----GGTAGAATAAA-CA--TCT-A-TCAA---GAAATAAAC--ACT-TCCGAAAAATT-Ga
gi|22 : TTCAGGGT----TGCA-AATAACCAC-TCGTCCACTTG--------CATA----TGC---GAGT---AATTTT-A-TTTGT
gi|23 : ct--------A-----AA---GT-------G------GTGC-GTATTTACATTGT-------ATGT--ACAGAAT--TTTG-AA-TCG
gi|24 : gcgaaTGCAA-TTCGA-TTTTCC----AGCAGAGTAAA-CA--CCT-AATCCAAT
gi|25 : AAGGGTCT-ATGCAATGCAA-TTCGA-TT
gi|3 : taAAGGGTCT-ATGCAATGAAA-TGCGA-TTTTTTTTTTGGTAGAATAAA-CA--TCT-ACTCAAAT--AAAT-AAT--G-T-CCTGAAAATTTTGA---CGAAGATAC-TGGCTGAA-TTAACAGAGATATTA-GCGAAAAAC----TC-CAAT--TATACACTGAAAGTAT-TTTTGA--AATAGTC--GGAT-TAAG-CCGC----A-ATCGC-TG-TGACG-TCACA-C-A-CAT-AAAC--A--GC---------A-AGTACAGA----------------TCAA-CAGTTGG-A-TGTCGCT-TTG-TTTG--A--ATTGTTTGT-TTGTAGTTT-T-AACGTACT-----AT----T--AA-----------A-A-TTTAGT---GATCGTTGAA-G--TTTTCAGTCG------TAGAA--------TTGGTGAT-CG-CATTG-TA-AATACGCGTGATATATAT------TAGATTTGATCGAA--------T---G-TTGAATG------T--AC--TT--CT-T--TG-GGA-CGCG-TG--G-----------A------------AAAGATTACAC-CCATA-T--A--CTTAACATTC--CCAT---AGCTGT-G-ATAG--T-TTTTCCAGTCTTGTG--AACATAC--A-TACAAGGCAGTGGGCTGAAGCCTG-GT-GATAAT--TTG------CTTTAC--TGCAATATATTT----------TAATCATTATGAT-TATT-TC-A--TATTTA-GTATTTT--T-CT-C-GGACTG-AAACCATA--CTGCC-----TCTG--AGAGATCG-AT----GAA--CAGATGAAAT--TTC-TGTTGTAGAAA---------T-ATACTTT-TATTTTA-TT-TA-CT-GTAGGT--AG--------------ACA---TA----ATATTCAGGGT----TGCA-AATAA-CACATC--------T--------AAT-----------GAGT---AT-TTT-A-TTTGTGA---GTG-ACCAA-ATTGTGAAAAT-CTCTCGCTCACATAT-GGCGAGT------AAACTT-------AC---T------TTTT-AAAAGATC-CGCATGC-GTT--CTTTTGA-CG-CTGC--A-T-A-CGTTTGTTGCCGAG----T---------G-T-------AAT-CATATTTT-TATTTCGA-GAAAT-TTT--------AATGTGAA---GT-------G------GTGC-GTATCAACAT--T-----GTATGT--ACAGAAT--TTTG-AA-T--TTTTCTC-GA--GTGAAGCTC
gi|4 : taGGGT----TGCA-AATAACCAC-TC--------G--------C---------C------T---AA-TTT-A-TTTTTT-----C---CCAA-ATT-TGAAAATCCTCTAGTCCAC--ATTGGCGAGTTGCCTAAAACTT---------------------TT-CAAA-ATC-GGG-T-C-G-T--GGTTTCA-CGGCTGCCAATT-AACGTTT-T-----------TTTGCCGAATG-T-------AATACACATTTC-C--CCCCAAGAAAT-TTC--------A-----CAT--GT-------GAAAAATGTGCCGTATTATCATTGT-------ATGT--GCAGAAT--TTTT-AA-CTGTTTTTCC-TCAAGTGGAa
gi|4 : cACGTGC-GAA-ATATACCGAAGT-CGGGTTAGAAAATTCT-------ACC--CCC---------------CAAAAAT--CA-GTTTTAGTGAAAG-GTTTATGAAataatcagagacgtacataatattatagtacacacataattatacatgtatagcgaaagtcgatctcttagaaaattactgcaggaacgtaaaattgttgcaaatgtgtacttaaagatagatctataaatcaaaacttattttgtaatagtaaattaaattaatcagattgaatctttatattgtatgcatatgccgtttaattgtcttgcgccacgtgcgaaatataccgaagtcgggttagaaaattctaccccccaaaaatcagttttagtgaaaggtttatgaattatgattaatgaaattttggaattaatctttcttttgccaaagaaataatttatttaattgttgcgatatactagtatacgagaaggtggccgatcacatgcgcatctgtactagctcatgatctttccagctgattccatatcggaggtagaggaaaacttttctgcctgctgcacgattttcacgggtctcagcatatgcggggttacttttaacctttgttgcagtaagtgtaccgtnnnnnnnnnnnnnnnnnnnnnnnnnatcaaaatgt
gi|4 : cgggttgcaaataaccactcgcctaatttattttttcccaaatttgaaaatcctctagtccacattggcgagttgcctaaaacttttcaaaatcgggtcgtggtttcacggctgccaattaacgtttttttgccgaatgtaatacacatttccccccaagaaatttcacatgtgaaaaatgtgccgtattatcattgtatgtgcagaatttttaactgtttttcctcaagtggaataatcagagacgtacataatattatagtacacacataattatacatgtatagcgaaagtcgatctcttagaaaattactgcaggaacgtaaaattgttgcaaatgtgtacttaaagatagatctataaatcaaaacttattttgtaatagtaaattaaattaatcagattgaatctttatattgtatgcatatgccgtttaattgtcttgcgccG-GGTTA-GAAAAT--TCTAC---CCCCCAAAAATCAGTTTTAGTGAAAGGTTTATGAATT-A-T-----GA-TTAATGAA-ATTTTGGAATTAAT---CTTTCTTTTGCCAAAG-AAATAATTTATTTAATTGTTGCGATAttatgattaatgaaattttggaattaatctttcttttgccaaagaaataatttatttaattgttgcgatatactagtatacgagaaggtggccgatcacatgcgcatctgtactagctcatgatctttccagctgattccatatcggaggtagaggaaaacttttctgcctgctgcacgattttcacgggtctcagcatatgcggggttacttttaacctttgttgcagtaagtgtaccgtnnnnnnnnnnnnnnnnnnnnnnnnnatcaaaatgt
gi|5 : cgggttgcaaataaccactcgcctaatttattttttcccaaatttgaaaatcctctagtccacattggcgagttgcctaaaacttttcaaaatcgggtcgtggtttcacggctgccaattaacgtttttttgccgaatgtaatacacatttccccccaagaaatttcacatgtgaaaaatgtgccgtattatcattgtatgtgcagaatttttaactgtttttcctcaagtggaataatcagagacgtacataatattatagtacacacataattatacatgtatagcgaaagtcgatctcttagaaaattactgcaggaacgtaaaattgttgcaaatgtgtacttaaagatagatctataaatcaaaacttattttgtaatagtaaattaaattaatcagattgaatctttatattgtatgcatatgccgtttaattgtcttgcgccacgtgcgaaatataccgaagtcTTCGC--TGCA-------A----------TA------ATAA---A----C-ATGTATTGTCACATTTTATT-CTTN-NNNNNN-NNNNNNNN--NNNNN-----NNNN--NGA----A-TT----GAA--CGGATGAAAT--TTC-TG-------AC---------T-AT-CTTTATATTTTA-TT-TATCT-GTAGGTA-AG--------------AC----TG----A-ATT-AGGGT----TGCACAATAA-CAC-TCG-------G--------CAAA----TG----GAGT---AA-TTT-ATTTTGTGGG-GGCG-GACAATAATGTGAAAATCCTCTTCGCCAC--AT-GG-GAAT------AAATTT-------AC---C------TTTT-AAAA-ATC-CGC---C-G-T--CGTTTGA--G--TCC--ATT-A-AA--------------------------G-T-------CA-ATACATGTT-TATTT-CA-GAATT-TTTTATGCGA-A-----AA---GT-------G------GTGC-GTATTTAC-TTG------GCATGT--ACAAGAT--TTTGAAA-TCGTTTTCTC-TC--GTAAAGCTCGTGTTAAGAAT-TTAG-TTACGTGT-GAATATTTAACG-AGT-CGGGTAAG-AATTG-T-------ACCAATGCAAAAAAAAAAAAAAAAAAAAAT--CAGG-TTTAGTGACAGAATTTATGAAAATTGGCCAC---C-----AAAATC-GTTTTA-TGAGAGTTTTATGAGTTAA-TGATTAGG-CCTATGAAGATTTT-GAA-T-ATATAATTTCTTTTGCAAAACAAAATAA-ATATATAATTGTCGCGATAGCTACC-GAAtactagtatacgagaaggtggccgatcacatgcgcatctgtactagctcatgatctttccagctgattccatatcggaggtagaggaaaacttttctgcctgctgcacgattttcacgggtctcagcatatgcggggttacttttaacctttgttgcagtaagtgtaccgtnnnnnnnnnnnnnnnnnnnnnnnnnatcaaaatgt
gi|6 : gacaaAAAGGTCT-GTGCAATGCAA-TGCTA-TTTTTT----GATAGAATAAA-CAATCATAACTCAAAGT-AATT-GAT--G-T--CTGAAAATTT-GA---CGAA-ATACTAGGCTGAATTTAACAGAGATATTA-GC-AAAATC----TCCAAAT--CACAC-CTGAAACGTTATTTTGACTAATAGTCCTGGTTC--AGTT-GCCA--ATATCGC-TG-TGACGTTCAC--C-GTCAT-GTTTGAG--GCCATTATCGAA-AG-AGAAAAAACAAGCGACGT-AATGAGTCAGTTGA-A-TTTTGCG---A-CTAGATA--GTTGTTTG--TTGTT-TTT-TCAACGTATTTATAGATGTT-T--AAGAT--A-CTAAA-A-TTTA---GTGATCGTAGACAGTTTTTTCAGTCG------TAGTACATGTATTTTGGTGAT-CGCAATTG-TA-AA---------------T------TA----T-ACCG----------T---G-T--A---------T--ATTGTT--CTAT--TCGG-A-CGTGATG-AA-----------A------------AAAG--TGCACATTATA-T--C--CATAACATTT-CACACTGAGGCCATTG--GAATTT-TTT-CCAGCATTGTGA-AACATAA-AATTATAAGG-AAT-GGCTGAACACTGTGT-TATTAC--TTGATTTAACTT-AC--TATG-------TTGATAACACATA-----TATAAT-TATT-TCTCTGTATTTACGTATTTT--TCCT-C-CGACTGTAAGCCATA--CTGCC-----TCTG--AGA----G-AT----GAACGCGAATGAAAT--TTC-TG-------AC---------T-ATATTTT-TATTTTATTT-TA-CT-GTAGgaaaggttgcagtacctatttttacccggatttcaaccgtgccttgtcatttgtaggcctgaggttttcgaccacggtctacatag
gi|7 : T--TAAAGGCC-TCTAAGATTAA-TT-AA-AATTTAGT---GATCGTTGAAAG--TTTTCAGTCG------TAGTA--------TTTGTGATCCGGCATTGCTA-AA-AT------------T------TA----T-ACCG----------T---GAT--ATTG------T--AT--TG--AT-T--T--G-ATCGTGCTG-AG-----------A------------AAAG-TTGCACATTATA-TTCC--CATAACATTCACCCAG---AGCCATGATAGAA--T-TTT-TCCACCATGTGAAAACATACAAA-TATAGGGCAGT-GGCT-AACCCTG-TTATATACTCCTTG------ATTCACCATACATATT---T----------TAAACATTATAATCTATTCTC-ATGTATTTACGTATTTT--T-CTACGCGACTG-AAACCATA--CTGCCACAAATCTG--AGA----GAAT----GAA--CGAATGAAATTGTTCTTG-------AC---------TAATACTTT-TATTTTA-TTCTA-CTAGTAGGTACAGCCTCCGGAGTAGGTACAGACTGA---A-ATTCAGGGT----TGCA-AATAACCACTTC--------G--------CATA----TGC---GAGT---AATTTT-A-TTT-TGGGCCGCGAACCAA-ATTGTGAAAATCCTCTCGCCCAC--AT-GGCGAAT-----AAAACTT-------ACCCTC------TTTTAAAAA-ATC-CGC-C-CGG-TTGGGTTTGATCG-CTGC--ATTCA-CA--------------------------GCT-------AATACACATTTTCTATTTCCA-GAAATCTTT--------A-----AATCTGCAAAACAAG-----TGTGC-GTATTTACA--AT-----GTATGCTAACAGAAT--Tt
gi|8 : --ATTGTTTGT-TTGTA-TTTCT-AACATATT--TAAATGTT-TT-AAGAT--A-TT-AA-AATTTAGT---GATCGTTGAAAG--TTTTCAGTTG------TAGTA--------TTCGTGAT-CGGCATTG-TA-AAT--------------T------TA----T-ATCG----------T---GAT--ATTGGTTTGAT--AT--TT--CT-T--TC-GGA-CGTG-TG-AG-----------A------------AAAG-TTACACATTATAAT--ATCCATAACATTC-ACCAT---------GG-AGAA--TGTTT-CCAGCATTGTG--AACATAC-AA--ATAAGGCAGT-GGCTGAAGCCTG-GT-TATAAT--TTG------CTTTAC--TACA-------TATTT------TAAACATTATAAT-TATT-TC-ATGTATTTACGTATTTT--T-CT-C-CGACTG-AAACCATATACTGCC-----TCTGCGAGATC--G-AT----GAA--GGGATGGAAT--TTC-TG-------ATGTAGACTATT-ATACTTT-TATTTTA-TA-TT-CT-GTAGGTACAG--------------AC----TT----A-ATTCAGGGT----TGCA-AATAACCAC-TC--------GGCCACACGCATA----TGC---GAAT---AA-TTTTA-TTTTTGGG-CG---ACCAA-ATTGTGAAAATCCTCTCATCCAC--AT-GGCGTGT-----AAAACTT-------AC---C------TTTT--AAA-ACC-CGC-T-C-G-T--GGTTTGA-CG-CTGC--ATT-A-CGCTTGT-----------T---------G-CCAAATGAAATACACAATTT-TATTTCCA-GAAAT-TTTTAATGTGAA-----AA---GT-------G------GTGC-GTATTTACAT--T-----GTATGT--ACAGTAT--TTTG-AA-CCGTTg
gi|9 : AAAAAAGAAAT--CT-G-TTTAGTGAAAG-GTT-AT--AAAT--GCCAC---C----AATAATC-GATTTACTGAAAATTTCATGAATT-A-TTAAT-GA-TTAATGAA---TTTGGAA-TAA-ATA-TTTC-TTTGCTAAAC-AGAT-A-TTTTATAATTGTCGCGATAGATA-C-GAA
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|19 ): TAGCCGAACGAACAGGATGTCATGGCCGAGTACCTATTTAAACCCGTAGATAAAAACCGTGGGTTGCACTTGTCATTGTAGGCCGAGGTTTTCGACCCGACGGTCTAACCTCAGGTGA
Unaligned ( gi|20 ): ATAGAAGTGTATTCTCAGATTCATTTGAACTCATGAATTTGAAGTGATCATCAGAACAATTTTGATTAGTTTATTTATAA
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111 111111111111111111111111111111111111
lowQualScore : 1111 111 111 1111111 11 22222222222222222222 1111 22 222222222 1111 22222222222222222222 111 111111 11111111 0000000000000000000000000000000000000000000000000000000000000000000 111111 11111 1 22222222222222 2 11111 1111 1 11111 111111 55555555555555555555 111 1 11111 1111 1111 555555555 5555555555555555555555555555 22222222222222222 1 1111 111111 2222222222222222222 000000000000000000000000000000000000 888888888888888888888888888888888888888 222222222 11 1 111 3333333 4444444 11 222222222 222222 222 111 1
lowQualScore : 4 4 0 4 3333 4 66 1 111 777 4444444 8 777 66 999 2 4 4 9999 2 66 4 4 55 55 77 8 55 4 4 4 4 11111111111111111111 66 4 0000 5 0 5 1 1 4 44 777 5 0 555555555 1 4 77 4 2222 2 66 11111111111111111111 777 1 66 222222 66666666 2 4 4 4 0000000000000000000000000000000000000000000000000000000000000000000 5 222222 4 66 5 55555 55 0 88888888888888 5 1 5 33333 1 5 1 0000 0 5 66 5 11111 5 1 5 77 77 666666 6 77 00000000000000000000 000 5 5 5 5 66 5 0 55 5 66 22222 66 7777 5 2222 77 77 5 777777777 5 5 5 5 5 5 2 8888888888888888888888888888 8888 4 8 44444444444444444 0 8888 777 777 6 4 4 5 9999 999 4 4 1 66 4 555555 5555555555555555555 77 4 4 888 4 4 666 4 8 66 555 222222222222222222222222222222222222 0 5 3 5 222222222222222222222222222222222222222 4 666666666 66 66 5 5 0 6 88 3 5 3 666 6 0 11 3 8 0 2222222 3 0 1111111 99 777 6 11 666666666 8 1 5 0 8 8 888888 6 88 0 222 111 0 8 8 0 8 1 2 0
lowQualScore : . . . . .... . .. . ... ... ....... . ... .. ... . . . .... . .. . . .. .. .. . .. . . . . .................... .. . .... . . . . . . .. ... . . ......... . . .. . .... . .. .................... ... . .. ...... ........ . . . . ................................................................... . ...... . .. . ..... .. . .............. . . . ..... . . . .... . . .. . ..... . . . .. .. ...... . .. .................... ... . . . . .. . . .. . .. ..... .. .... . .... .. .. . ......... . . . . . . . ............................ .... . . ................. . .... ... ... . . . . .... ... . . . .. . ...... ................... .. . . ... . . ... . . .. ... .................................... . . . . ....................................... . ......... .. .. . . . . .. . . . ... . . .. . . . ....... . . ....... .. ... . .. ......... . . . . . . ...... . .. . ... ... . . . . . . . .
lowQualScore : 4 0 6 0 9999 4 11 0 888 777 8888888 0 888 44 333 6 4 4 4444 9 11 4 0 55 55 99 0 55 0 0 0 0 88888888888888888888 33 4 6666 0 2 0 0 0 2 99 999 0 4 777777777 9 4 11 4 9999 6 11 66666666666666666666 888 9 11 888888 11111111 9 4 4 4 8888888888888888888888888888888888888888888888888888888888888888888 3 888888 4 99 0 88888 22 0 00000000000000 0 6 0 88888 0 0 4 6666 8 0 99 0 77777 7 0 7 00 99 444444 3 99 11111111111111111111 000 7 7 0 6 99 0 0 88 0 99 55555 99 5555 0 1111 99 99 7 999999999 7 7 7 7 7 7 5 4444444444444444444444444444 5555 0 0 66666666666666666 1 5555 000 000 0 0 0 0 7777 000 4 4 9 11 4 777777 2222222222222222222 33 0 0 444 0 0 555 0 9 11 333 000000000000000000000000000000000000 4 0 2 0 222222222222222222222222222222222222222 4 000000000 11 11 0 0 2 7 33 7 5 2 000 7 8 88 2 0 8 5555555 2 2 2222222 22 555 7 00 888888888 0 4 0 8 0 0 444444 0 88 8 222 888 8 8 0 8 0 0 5 0
consensus : NAAGGGTCT-ATGCAATGCAA-TTCGA-TTTTCC----GGCAGAGTAAA-CA--CCTANTCCAATTAAAAT-NAT--A-T-CCTGAAAATTT-GA---CGAAGNTAC-AGGCNGAATC-AACGGAGATATTA-GCGAAAAAC----TCGAAAC--CACAC-CTGAACGGAT-TTTTGA--AAAAGTC--GGTTCTAAGC-GCCA--A-ATCGC-TG-TGACGT-CACGT-C-G-CGT-ATAT--C--GCCATCTTG-GATAG-AGAGAAA----GCG-TGTAGATCAG-CTGATGATATTTCGCGA-TA-TTTA-A--ATTGTTTGT-TTGTA-TTT-T-GACGTATTTANA--TGCT-T--AAGGT--A-TTNN-A-TTTAGTCGTGATCGTTGAAAGTTTT--CAGTCG------TAGTA--------TTCGTGAT-CGGCATTG-TA-AATAC------------T------TA----T-AC-------------CG----------T---G-T---AATG------TAT-T--TCT-TTCG---GA-CGTG-TG-AG-----------AAAAG-TTACACACCATA-T--A--CNTAACATTC-CCCAT---AGCCATNG-AGAATTTTTCCAGCCTTGTG--AA-CATAC-AAT-ACAAGGCAGTGG-CTGAANCCTG-GT-TATAAT--TTG------CTTTAC--TAC--A-----TA-TT-T--AATCAT---TATAAT-TATT-TC-ATGTATTTACGTATTTT--TC-T-C-CGACTG-AAACC--ATACTGCC-----TCT--GAGA----G-AT----GAACG--GATGAAAT--TTC-TG-TGTAG---ACT-ATACTTT-TATTTTA-TT-TA-CT-GTAGGTACAG--------------ACA---TG----A-ATTCAGGGT----TGCA-AATAACCAC-T--------C--------GCATA----TGC---GAGT---AATTTT-A-TTTGTGGG-CGC-G-ACCAA-ATTGTGAAAATCCTC-TCGCCCAC--AT-GGCGAGT-----AAAACTT-------AC---C------TTTT-AAAA-ATC-CGC-T-C-G-T--NGTTTGA-CG-CTGC--ATT-A-CGTTT-T-----------T---------G-T-------AATACACATTTT-TATTTCCA-GAAAT-TTT--------A-----AA---GT-------G-----TGTGC-GTATTTACATT-----GTGTATGT--ACAGAAT--TTTG-AA-TCGTTTTCTC-TC--GTGAAGCTCGTGTTAAGAATTT-G-TTACGTGT-GAATATNTAACGAAGT-CGGGTTAGAAATTGCT-------ACCAATGC--AAAAAAAAAAAAAAAAAAAT--CA-G-TTTAGTGAAAG-GTTTATGAAAAT--GCCAC---C----AAAAATC-GTTTTACTGAAAGTTTTATGAATT-A-TGATTAGG-TTAATGAA-ATTTTGGAATAATAT-A-TTTCTTTTGCNAAAC-AAATAA-TTATATAATTGTCGCGATAGNTACC-GAACG
Reference ( family-926 ) : NAAGGGTCT-ATGCAATGCAA-TTCGA-TTTTCC----GGCAGAGTAAA-CA--CCTANTCCAATTAAAAT-NAT--A-T-CCTGAAAATTT-GA---CGAAGNTAC-AGGCNGAATC-AACGGAGATATTA-GCGAAAAAC----TCGAAAC--CACAC-CTGAACGGAT-TTTTGA--AAAAGTC--GGTTCTAAGC-GCCA--A-ATCGC-TG-TGACGT-CACG--C-G-CGT-GTAT--N--GCCATCTTG-GATAG-AGAGAAA----GCG-TGTAGATCAG-CNGNTGATATTTCGCGA-TA-TTTG-A--ATTGTTTGT-TTGTA-TTT-T-GACGTATTTANA--TGCT-T--AAGGT--A-TTNN-A-TTTAGTCGTGATCGTTGAAAGTTTT--CAGTCG------TAGTA--------TTCGTGAT-CGGCATTG-TA-AATAC------------T------TA----T-AC-------------CG----------T---G-T---ANTG------TAT-T--TCT-TTCG---GA-CGTG-TG-AG-----------AAAAG-TTACACACCATA-T--A--CNTAACATTC-CCCAT---AGCCATNG-AGAATTTTTCCAGCCTTGTG--AA-CATAC-AAT-ACAAGGCAGTGG-CTGAANCCTG-GT-TATAAT--TTG------CTTCAC--TAC--A-----T--TT-T--AA-CAT---TATAAT-TATT-TC-ATGTATTTACGTATTTT--TC-T-C-CGACTG-AAACC--ATACTGCC-----TCT--GAGA----G-AT----GAACG--GATGAAAT--TTC-TG---------ACT-ATACTTT-TATTTTA-TT-TA-CT-GTAGGTACAG--------------ACA---TG----A-ATTCAGGGT----TGCA-AATAACCAC-T--------C--------GCATA----TGC---GAGT---AA-TTT-A-TTTGTGGG-CGC-G-ACCAA-ATTGTGAAAATCCTC-TCGCCCAC--AT-GGCGAGT-----AAAACTT-------AC---C------TTTT-AAAA-ATC-CGC-T-C-G-T--NGTTTGA-CG-CTGC--ATT-A-CGTTT-T-----------T---------G-T-------AATACACATTTT-TATTTCCA-GAAAT-TTT--------A-----AA---GT-------G-----TGTGC-GTATTTACATT-----GTGTATGT--ACAGAAT--TTTG-AA-TCGTTTTCTC-TC--GTGAAGCTCGTGTTAAGAATTT-G-TTACGTGT-GAATATNTAACGAAGT-CGGGTTAGAAATTGCT-------ACCAATGC--AAAAAAAAAAAAAAAAAAAT--CA-G-TTTAGTGAAAG-GTTTATGAAAAT--GCCAC---C----AAAAATC-GTTTTACTGAAAGTTTTATGAATT-A-TGATTAGG-TTAATGAA-ATTTTGGAATAATAT-A-TTTCTTTTGCNAAAC-AAATAA-TTATATAATTGTCGCGATAGNTACC-GAACG
gi|1 : GAAAATTT-GA---CGAAGTTAT-AAGCAGAATC-AAAGGAGATATTA-GCGAAAAAC----TCGGAAC--CACAC-CTGAACGGAT-TTTTGA--AAAAGTC--GGTTCTA-GC-GCCA--A-ATCGC-TG-TGACGT-CACG--T---CGTTATAT--C--GCCATCTTG--AT-G-AGAGAAA----GCG-TGTAGATCAG-CTGATAAT--TTCGC-A-TA-TTTATATCATTGTCT-T-TTGT---TT-T-G--GTGTCTACA--TGCTAT--ATGGT--A-TTTT-A-TTTAGTCGTGATCGTTGAA-GTTTT--CAGTCG------TAGTA--------TTCGTGAT-CGGCATTG-TA-AATACG-----------TAA----TA----T-ACTTTTGATTTGATTCGA---------T---G-TTGAAATG------TAC-T--TCT-TTGG---GA--------------------------G-TTACAC-CCAAA-T--A--CTTAACATTC-CTCAT---AGCCATTG-AGAATTTTTCCAGCCTTGTG--AA-CATAC-A-T-ACAAGACAGTGA-CCGAAGCCTG-GT-GATAAT--TTG------CTTCAC--TAC--A-----TATTT-T--AATCAT---TAAAAT-TATT-TC-AT--ATTTACGTATTTT--TC-T-C-GGAGTG-AAACC--ATACTGCC-----TCT--GAGA----G-ATCGATGAACA--GATGAAAT--TTC-TGTTGTAG---ATT-ATATTTT-TATTTCA-TT-TC-AT-GTAAGTACAG--------------ACA---TGTATAATATTCAGAGT----TGCA-AATTACCAC-T--------C--------ACATA----TATAATGAGT---AA-TTTTA-TTTGTGGG-CG----ACCAA-ATTGTGAAAATCTTC-TCGCCAAC--AT-GGCGAGT-----AAAACTT-------AG---T------TTTT-AAAA-ATC-CGC-T-C-G-T--TTTTTGA-CG-CTGC--ATA-A-CGTTTGTTTGTTGCCGAAT---------G-T-------AATTCACATTTT-TAT------G-------------------------------------------GTGC-GTA-TTA-ATT-----A-GTAT--------AAT--TTTG-AA-ATGTTTTCTC-TCGAGTGAAGCTCAACTT-AGTATTT---TAACATGTAGCATACGTA
gi|1 : TT-GCTTACGTGT-GACTATA-AACGAAGT-CGGGTTAGAAATTGCtagacctatagggaatgtcaatctccaggaaaattactgcaggaatgtaaaattgttgaaaatgtgatacataaaaatgtatatatataaccttttcatgtaacagccaattaaaattaatcagatcgaatatttatattgtataccatgaaagtgtcttgcttacgtgtgactataaacgaagtcgggttagaaattgcagtttagtgaaaggtttatgaaaatgccataaaaaaaaatcaatatactgaaagttttatgaattatgatttttgaaattctggaataatatttcttttgcaaacaaataattatataattgtcacgatagatactagaatgttgcaagtatatgcgcatgtattttaaccgtacacttgtcacttagtgttttgcaatatacaatttaaaaatttccatgcagggaggtagaggaacactttctgcctgctgcacgatttccataggtctcagcatatgtggttacttttaacttttgttttgcagtaagcataacgtgtattttatagtaccatctaaatagagcgaaatttcgcaatttttgggatctgttttggaagtcatatgcacacattgaaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnctttctgggcggggttttaagttgatttatacaggtttagaaagttcaaacacat
gi|1 : gaaaatttgacgaagttataagcagaatcaaaggagatattagcgaaaaactcggaaccacacctgaacggatttttgaaaaagtcggttctagcgccaaatcgctgtgacgtcacgtcgttatatcgccatcttgatgagagaaagcgtgtagatcagctgataatttcgcatatttatatcattgtcttttgttttggtgtctacatgctatatggtattttatttagtcgtgatcgttgaagttttcagtcgtagtattcgtgatcggcattgtaaatacgtaatatacttttgatttgattcgatgttgaaatgtacttctttgggagttacacccaaatacttaacattcctcatagccattgagaatttttccagccttgtgaacatacatacaagacagtgaccgaagcctggtgataatttgcttcactacatattttaatcattaaaattatttcatatttacgtatttttctcggagtgaaaccatactgcctctgagagatcgatgaacagatgaaatttctgttgtagattatatttttatttcatttcatgtaagtacagacatgtataatattcagagttgcaaattaccactcacatatataatgagtaattttatttgtgggcgaccaaattgtgaaaatcttctcgccaacatggcgagtaaaacttagtttttaaaaatccgctcgttttttgacgctgcataacgtttgtttgttgccgaatgtaattcacatttttatggtgcgtattaattagtataattttgaaatgttttctctcgagtgaagctcaacttagtattttaacatgtagcatacgtatagacctatagggaatgtcaatctccaggaaaattactgcaggaatgtaaaattgttgaaaatgtgatacataaaaatgtatatatataaccttttcatgtaacagccaattaaaattaatcagatcgaatatttatattgtataccatgaaagtgtcAGAAATTGCA-G-TTTAGTGAAAG-GTTTATGAAAAT--GCCATAAAA----AAAAATC-AATATACTGAAAGTTTTATGAATT-A-TGATT----TT--TGAA-ATTCTGGAATA--AT-A-TTTCTTTTGC-AAAC-AAATAA-TTATATAATTGTCACGATAGATACTAGAATGagtttagtgaaaggtttatgaaaatgccataaaaaaaaatcaatatactgaaagttttatgaattatgatttttgaaattctggaataatatttcttttgcaaacaaataattatataattgtcacgatagatactagaatgttgcaagtatatgcgcatgtattttaaccgtacacttgtcacttagtgttttgcaatatacaatttaaaaatttccatgcagggaggtagaggaacactttctgcctgctgcacgatttccataggtctcagcatatgtggttacttttaacttttgttttgcagtaagcataacgtgtattttatagtaccatctaaatagagcgaaatttcgcaatttttgggatctgttttggaagtcatatgcacacattgaaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnctttctgggcggggttttaagttgatttatacaggtttagaaagttcaaacacat
gi|10 : gaaaatttgacgaagttataagcagaatcaaaggagatattagcgaaaaactcggaaccacacctgaacggatttttgaaaaagtcggttctagcgccaaatcgctgtgacgtcacgtcgttatatcgccatcttgatgagagaaagcgtgtagatcagctgataatttcgcatatttatatcattgtcttttgttttggtgtctacatgctatatggtattttatttagtcgtgatcgttgaagttttcagtcgtagtattcgtgatcggcattgtaaatacgtaatatacttttgatttgattcgatgttgaaatgtacttctttgggagttacacccaaatacttaacattcctcatagccattgagaatttttccagccttgtgaacatacatacaagacagtgaccgaagcctggtgataatttgcttcactacatattttaatcattaaaattatttcatatttacgtatttttctcggagtgaaaccatactgcctctgagagatcgatgaacagatgaaatttctgttgtagattatatttttatttcatttcatgtaagtacagacatgtataatattcagagttgcaaattaccactcacatatataatgagtaattttatttgtgggcgaccaaattgtgaaaatcttctcgccaacatggcgagtaaaacttagtttttaaaaatccgctcgttttttgacgctgcataacgtttgtttgttgccgaatgtaattcacatttttatggtgcgtattaattagtataattttgaaatgttttctctcgagtgaagctcaacttagtattttaacatgtagcatacgtatagacctatagggaatgtcaatctccaggaaaattactgcaggaatgtaaaattgttgaaaatgtgatacataaaaatgtatatatataaccttttcatgtaacagccaattaaaattaatcagatcgaatatttatattgtataccatgaaagtgtcttgcttacgtgtgactataaacgaagtcgggttAAGGGTCT-ATGCAATGCAA-TTCGA-TTTTCC----AGCAGAGTAAA-CA--CCTAATCCAATTAAAA---AT--A-T-ACTGAAAATTT-GA---CGAAGTTAT-AAGCAGAATC-AACGGAGATATTA-GCGAAAAAC----TCGAAAC--CACAC-CTGAACGGAT-TTTTGA--AAAAGTC--GGTTCT-AGC-GCCA--A-ATCGC-TG-TGACGT-CACGT-C-G-TGT-ATAT--C--GCCATCTTG-GATAG-AGAGAAA----GCG-TGTAGATCAG-CTGATAAT-TTTCGCGA-TA-TTTA-T--ATCATTTGTCTTTTG-ATT-T-GGTGCATTTACA--TGCT-A--TAGGT--ATTTTT-A-TTTAGTCGTGATCGTTGAAAGTTTT--CAGTCGTAGCTATAGTA--------TTCGTGAT-CGGCATTG-TA-AATA-------------T------CA----T-A--------------CG--------------G-T---AATA------TATAT--TGG-TTTGATCGA-TGT--TG-AATGTACTTCTTTGGGAG-TTACAC-CCATA-T--A--CTTAACATTC-CCCAT---AACCAT-G-AGAATTTTCCCAGCCTTGTG--AA-CATAC-ttgcaagtatatgcgcatgtattttaaccgtacacttgtcacttagtgttttgcaatatacaatttaaaaatttccatgcagggaggtagaggaacactttctgcctgctgcacgatttccataggtctcagcatatgtggttacttttaacttttgttttgcagtaagcataacgtgtattttatagtaccatctaaatagagcgaaatttcgcaatttttgggatctgttttggaagtcatatgcacacattgaaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnctttctgggcggggttttaagttgatttatacaggtttagaaagttcaaacacat
gi|11 : TGAACGGAT-TTTTGA--AAAAGTC--GGTTCTA-GT-GCCA--A-ATCGC-TG-TGACGT-CACG--TTG-TGT-ATAT--C--GCCATCTTG-AATAG-AGAGAAA----GCG-TGTAAATCAG-CTGATAAT-TTTCGCGA-TA-TTTA----------TAT-TTATG-TTT-T-GGTGCATTTACA--TGCT-A--TAGGT--A-TTTTTA-TTTAGTCGTGATCGTTGAAAGTTTT--CAGTCG------TAGTA--------TTCGTGAT-CGGCATTT-TA-AATAC------------CGTAATATA----T-AT-------------TGATTTGATCGAT---G-TTG-AATG------TAC-T--TCT-TTGG---GA-TGCG-TGGAA-----------AAAAG-TTACAC-CCATA-T--A--CTTAACATTC-CCCAT---AGCCATTG-AGAATTTTTCCAGCCTTGTG--AA-CATAC--AT-ACATGGCAGTGG-CTGAAACCTG-GT-GATAAT--GTG------CTTTAC--TACATA-----T--TT-T--AATCAT---TATAAT-TATT-TC-A--TATTTACGTATTTT--TC-T-C-GGACTG-AAACC--ATACTGCA-----TCT--GAGA----G-A
gi|12 : AAGGGTCT-ATGCAATGCAA-TTCGA-TTTTCC----AGCAGAGTAAA-CA--CCTAATCCAATTAAAAC-TAT--A----CTGAAAATTT-GA---CGAAGTTAT-AAGCAGAATC-AACGGAGATATTA-GCGAAAAAC----TCGAAAC--CACAC-CTGAACGGAT-TTTTGA--AAAAGTC--GGTTCTA-GC-GCCA--A-ATCGC-TG-TGACGT-CACGT-C-G-TGT-ATAT--T--GCCATCTTG-GATAG-AAAGAAA----GCG-TGTAGATCAG-CTGATAAT-TTTCGCGA-TA-T-----------------TTATA-TC---------ATTTGT-----CT-T-----------TTGT---TTTGGTCGTGATCGTTGAAATTTTC--CAGTCG------TAGTA--------TTCGTGAT-CTGCATTG-TATAA-----------------------A----A-AC-------------CG----------TACGG-T---AATA------TAT-
gi|13 : aGCGAAT-----AAA-CTT-------AC---CGT----TTTT-AAAA-ATCGCGC-C-C-G-T--CTGTTGA-CGGCTCC--ATT-A-CGTT----------------------------------AATA-ACATTCT-T-TTTCCA-GAAAT-TTTTAATGCG-A-----AA---AA-------G-----TGTGC-GTATTTACAT-------TGTATGT--ACAGAAGAATTTG-AAGTCGTTTCTTCTTC--GTAAAGCTCGTGTT-AGAA-TT-G-TTACGTGG-GAAattgatttgat
gi|13 : AGTTCGGGTTAGAAATTGCTTAGCCATGCCAATAA--AAAAAAAAAAAAAAAAAATC--CA-T-GTTAGTGGAAattagtcagtaacttcgagaaagtttggtgtgtgtatggagcagttcgggttagaaattgcttagccatgccaataaaaaaaaaaaaaaaaaaaatccatgttagtggaatccttgaatccacgttagagtggtttttaatggtatttttct
gi|14 : gcgaataaacttaccgtttttaaaaatcgcgcccgtctgttgacggctccattacgttaataacattctttttccagaaatttttaatgcgaaaaagtgtgcgtatttacattgtatgtacagaagaatttgaagtcgtttcttcttcgtaaagctcgtgttagaattgttacgtgggaaattagtcagtaacttcgagaaagtttggtgtgtgtatggagcAAGGGTCT-ATGCA-TGCAA-TTCGA-TTTTTA----AGCATAGTAAA-CA--CCTATTCCAATAAAAAC-TAT--A----CTGAAAATTT-GA---CGAAG------------ATC-AACGGAGATATTA-GCGAAAAAC----TCGAAAC--TACAC-CTGAACAGAT-ATTTGA--AAAAGTC--GGTTCT-AGC-GCCA--A-ATCGC-TG-TGACGT-CACGT-C-G-TGT-ATAT--C--GCCATCTTG-GATAG-AGAGAAA----GCG-TGTAGATCAG-TTGAT-ATATTTTGCGA-TA-TTTA-T--A----TCAT-TTGTA-TTT-T-Gtccttgaatccacgttagagtggtttttaatggtatttttct
gi|15 : aTCT-ATGCAATGCAAATTCGA-TTTTCCA---GGCAGAGTAAA-CA--CCTAATCCAATTTAAA--CAT--A-TATCTGAAAATTTGGA---CG-ACATAT-AAGCAGAATC-AATGGAGATATTA-GCGAAAAACGCGACCGAAAC--CACAT-CTGAACGGA--TTTTGA--AAAAGTC--GGTTTCTAGC-GCCA--A-ATCGCTTGTTGACGT-CACGTCT-G-TGT-ATAT--C--GCCATCTTGAGATAG-AGA
gi|16 : TTAAAA--AATCGA-T-CCTGAAAATTT-TATTGCGATCGTAC-A---TGTACT-ATTGGAGATATTT-GGGGTAA------TCACAATTTCACAC-CTGAACG-AC-TTTTAA--ACCGGGC--TGTTTTG-GT-GCGATTA-AT-GT-CG-TGACGT-CACG--
gi|17 : taaaagatatctgcaaccccggtcatttgttttaaatttggagggttacagt-ATGCAGGGTATGTTGCA-AATAACCAG-T--------T--------GCCCACTCTTGC---AAATGAGAA-TAT-A-TTT-TGTG-TGC-A-ACCAA-AATATGAAAATCCTA-TTGCCAAC--AT-GGTGTGT-----AAAATTT-------AC---CGTAACTTTTC-CAAA-ATC-CAC-T-T-G-C--AGTTTAA-CA-TTAC--ATT---TGTTT-aggtcaacatcgcc
gi|18 : AGGGT----TGCA-AATAACCAC-T--------C--------GCAAA----TGC---GAGT---AATTTT-A-TTTGTGG---GC-G-ACCAG-TTTATGAAAGTTCTC-TCGCCCAC--AA-GGCGAGT-----AAAAATTTATCGTAAC---T------TTTC-TGGA-ATT-CGT-T-C-A-C--AGTTTGA-agaaggtttcaacttctga
gi|2 : AAAGGTCT-GTGCAATGCAA-TGCTA-TTTTTT----GATAAAATAAAATA--TCTACTCAAA--AAAAT-GAT--G-T-CCTGAAAATTT-GA---CGAAGATAC-TGACTGAATT-AACAGAGATATTACGCGAAAAAC----TC-CAAT--CACAC-CTGAACGTAT-TTTTGA--AAAAGCC--GGGTTTAAGC-GCCA--A-ATCGC-TG-TGACGT-CAC---C-G-CAT-GTTTTGA--GCCATATCG-AA-AGTAGAAAAA----CAG-TACGAATGAG-CAGTTGA-ATTTCGCT--TAGTTTG-A--ATTGTTTGT-TTGTA-TTT-TCAACGTATTTAAA--TGTT-T--AAGAT--A-TTAA-A-TTT----GTGATCGTTGAAAGTTTT--CAGTCG------TAGTA--------TT-GTGAT-CGGCACTG-TA-AAT--------------T------TA----T-AC-------------CG----------T---G-T---ATTG------TAT-T--TCT-TTC----GA-CGTG-TG-AG-----------AAAAG-TTGCAC-TTATA-T--C--CATAACATTC-ACTAG---AGCCATGG-AGAA-TTTTCCAGCATTGTG--AA-CATAC-AAT-ATAAGGCAGTGA-CTGAACCCTG-GT-TATAAT--TTG------ATTTAC--TAC---------------------------ATAAT-TATT-TC-ATGCATTTACGTATTTT--TC-T-C-CGACTG-AAA-C--ATATTGCC-----TCT--GAGA----G-AT----GAACG--GATGAAAT--TTC-TG---------ACT-ATACTTT-TATTTTA-TT-TA-CT-GTAGGTACAG--------------AC----TG----A-ATTCAGGGT----TGCA-AATAACCAC-T--------C--------GCATA----TGC---GAGT---AA-TTT-A-TTTGTGGG-CGCGG-ACCAA-ATTGTGAAAATCCTC-TCCGCCAC--AT-GGCGAAT------AAACTT-------AC---C------TTTT-AAAA-ATC-CGC-C-C-G-T--CGTTTGA-CG-CTGC--ATC-A-CA--------------------------G-T-------AATACACATTTT-TATTTCCA-GAAAT------------------AA---GT-------G-----TGTGC-GTATTTACATTGTACAGTGTATGT--AC-GAAT--TTTG-AA-TCGTTTTCTC-TC--GT-AAGCTCGTGTTAAGAATTT-G-TTACGTGT-GAATATTTAACGAAGT-CGGGTTAGAAATTGCT-------ACCAATGC-------AAAAAAAAAAAAAAT--CA-G-TTTAGTGAAAG-ATTTATGAAAAT--GCCAC---C----AAAAATC-GTTTTACTGAGAGTTTTATG-ACT-ATTGATTAGGCCTAATGAA-ATTTTGG-ATAATAT-ATTTTCTTTTGCAAAAC-AAATAA-CTATATAATTGTCGCGATAGCTACC-GAACGatcaacttttacttgcactttcg
gi|21 : tAGGATATCATGCAATGAAA-TGCGATTTTTTT----GGTAGAATAAA-CA--TCTAT--CAA--GAAATAAAC--ACT-TCCGAAAAATT-Ga
gi|22 : TTCAGGGT----TGCA-AATAACCAC-T--------CGTCCACTTGCATA----TGC---GAGT---AATTTT-A-TTTGT
gi|23 : ct--------A-----AA---GT-------G------GTGC-GTATTTACATT-----GT--ATGT--ACAGAAT--TTTG-AA-TCG
gi|24 : gcgaaTGCAA-TTCGA-TTTTCC----AGCAGAGTAAA-CA--CCTAATCCAAT
gi|25 : AAGGGTCT-ATGCAATGCAA-TTCGA-TT
gi|3 : taAAGGGTCT-ATGCAATGAAA-TGCGA-TTTTTTTTTTGGTAGAATAAA-CA--TCTACTCAAAT--AAAT-AAT--G-T-CCTGAAAATTTTGA---CGAAGATAC-TGGCTGAATT-AACAGAGATATTA-GCGAAAAAC----TCCAA-T--TATACACTGAAAGTAT-TTTTGA--AATAGTC--GGAT-TAAGCCGC----A-ATCGC-TG-TGACGT-CACA--C-A-C-----------------------ATAA-ACAGCAA----G---TACAGATCAA-CAGTTGG-ATGTCGCTT-TG-TTTG-A--ATTGTTTGT-TTGTAGTTT-T-AACGTACT---A--T----T--AA----------A-A-TTTAGT---GATCGTTGAA-GTTTT--CAGTCG------TAGAA--------TTGGTGAT-CG-CATTG-TA-AATACGCGTGATATATAT------TAGATTTGAT-------------CGAA--------T---G-TTG-AATG------TAC-T--TCT-TTGG---GA-CGCG-TG--G-----------AAAAGATTACAC-CCATA-T--A--CTTAACATTC-CC-AT---AGCTGT-G-ATAGTTTTTCCAGTCTTGTG--AA-CATAC-A-T-ACAAGGCAGTGGGCTGAAGCCTG-GT-GATAAT--TTG------CTTTAC--TGC--AATATAT--TT-T--AATCAT---TATGAT-TATT-TC-AT--ATTTA-GTATTTT--TC-T-C-GGACTG-AAACC--ATACTGCC-----TCT--GAGAGATCG-AT----GAACA--GATGAAAT--TTC-TGTTGTAGA--AAT-ATACTTT-TATTTTA-TT-TA-CT-GTAGGT--AG--------------ACA---TA----ATATTCAGGGT----TGCA-AATAA-CACAT--------C--------TAAT-----------GAGT---AT-TTT-A-TTTGTGA---GT-G-ACCAA-ATTGTGAAAAT-CTC-TCGCTCACATAT-GGCGAGT------AAACTT-------AC---T------TTTT-AAAAGATC-CGCATGC-GTT--CTTTTGA-CG-CTGC--A-T-A-CGTTTGTTGCCGAG----T---------G-T-------AAT-CATATTTT-TATTTCGA-GAAAT-TTT--------AATGTGAA---GT-------G------GTGC-GTATCAACAT-------TGTATGT--ACAGAAT--TTTG-AA-T--TTTTCTC-GA--GTGAAGCTC
gi|4 : taGGGT----TGCA-AATAACCAC-T--------C--------GC---------C------T---AA-TTT-A-TTTTTT-----C----CCAA-ATT-TGAAAATCCTC-TAGTCCAC--ATTGGCGAGTTGCCTAAAACTT---------------------TT-CAAA-ATC-GGG-T-C-G-T--GGTTTCA-CGGCTGCCAATT-AACGTTT-T-----------TTTGCCGAATG-T-------AATACACATTTC-C--CCCCAAGAAAT-TTC--------A-----CAT--GT-------GAAAAATGTGCCGTATTATCATT-----GT--ATGT--GCAGAAT--TTTT-AA-CTGTTTTTCC-TCAAGTGGAa
gi|4 : cACGTGC-GAA-ATATACCGAAGT-CGGGTTAGAAAATTCT-------ACC--CCC---------------CAAAAAT--CA-GTTTTAGTGAAAG-GTTTATGAAataatcagagacgtacataatattatagtacacacataattatacatgtatagcgaaagtcgatctcttagaaaattactgcaggaacgtaaaattgttgcaaatgtgtacttaaagatagatctataaatcaaaacttattttgtaatagtaaattaaattaatcagattgaatctttatattgtatgcatatgccgtttaattgtcttgcgccacgtgcgaaatataccgaagtcgggttagaaaattctaccccccaaaaatcagttttagtgaaaggtttatgaattatgattaatgaaattttggaattaatctttcttttgccaaagaaataatttatttaattgttgcgatatactagtatacgagaaggtggccgatcacatgcgcatctgtactagctcatgatctttccagctgattccatatcggaggtagaggaaaacttttctgcctgctgcacgattttcacgggtctcagcatatgcggggttacttttaacctttgttgcagtaagtgtaccgtnnnnnnnnnnnnnnnnnnnnnnnnnatcaaaatgt
gi|4 : cgggttgcaaataaccactcgcctaatttattttttcccaaatttgaaaatcctctagtccacattggcgagttgcctaaaacttttcaaaatcgggtcgtggtttcacggctgccaattaacgtttttttgccgaatgtaatacacatttccccccaagaaatttcacatgtgaaaaatgtgccgtattatcattgtatgtgcagaatttttaactgtttttcctcaagtggaataatcagagacgtacataatattatagtacacacataattatacatgtatagcgaaagtcgatctcttagaaaattactgcaggaacgtaaaattgttgcaaatgtgtacttaaagatagatctataaatcaaaacttattttgtaatagtaaattaaattaatcagattgaatctttatattgtatgcatatgccgtttaattgtcttgcgccG-GGTTA-GAAAAT--TCTAC---CCCCCAAAAATCAGTTTTAGTGAAAGGTTTATGAATT-A-TGA------TTAATGAA-ATTTTGGAATTA-AT-C-TTTCTTTTGCCAAAG-AAATAATTTATTTAATTGTTGCGATAttatgattaatgaaattttggaattaatctttcttttgccaaagaaataatttatttaattgttgcgatatactagtatacgagaaggtggccgatcacatgcgcatctgtactagctcatgatctttccagctgattccatatcggaggtagaggaaaacttttctgcctgctgcacgattttcacgggtctcagcatatgcggggttacttttaacctttgttgcagtaagtgtaccgtnnnnnnnnnnnnnnnnnnnnnnnnnatcaaaatgt
gi|5 : cgggttgcaaataaccactcgcctaatttattttttcccaaatttgaaaatcctctagtccacattggcgagttgcctaaaacttttcaaaatcgggtcgtggtttcacggctgccaattaacgtttttttgccgaatgtaatacacatttccccccaagaaatttcacatgtgaaaaatgtgccgtattatcattgtatgtgcagaatttttaactgtttttcctcaagtggaataatcagagacgtacataatattatagtacacacataattatacatgtatagcgaaagtcgatctcttagaaaattactgcaggaacgtaaaattgttgcaaatgtgtacttaaagatagatctataaatcaaaacttattttgtaatagtaaattaaattaatcagattgaatctttatattgtatgcatatgccgtttaattgtcttgcgccacgtgcgaaatataccgaagtcC-ATGTATTGTCACATTTTATTC-TTN-NNNNNN-NNNNN--NNNNNNNN-----NNN--NNGA----A-TT----GAACG--GATGAAAT--TTC-TG---------ACT-AT-CTTTATATTTTA-TT-TATCT-GTAGGTA-AG--------------AC----TG----A-ATT-AGGGT----TGCACAATAA-CAC-T--------CG-------GCAAA----TG----GAGT---AA-TTT-ATTTTGTGGG-GGC-G-GACAATAATGTGAAAATCCTCTTCG-CCAC--AT-GG-GAAT------AAATTT-------AC---C------TTTT-AAAA-ATC-CGC---C-G-T--CGTTTGA--G--TCC--ATT-A-AA--------------------------G-T-------CA-ATACATGTT-TATTT-CA-GAATT-TTTTATGCGA-A-----AA---GT-------G------GTGC-GTATTTAC-TT-----G-GCATGT--ACAAGAT--TTTGAAA-TCGTTTTCTC-TC--GTAAAGCTCGTGTTAAGAATTTAG-TTACGTGT-GAATATTTAACG-AGT-CGGGTAAG-AATTG-T-------ACCAATGCAAAAAAAAAAAAAAAAAAAAAT--CAGG-TTTAGTGACAGAATTTATGAAAATTGGCCAC---C-----AAAATC-GTTTTA-TGAGAGTTTTATGAGTTAA-TGATTAGG-CCTATGAAGATTTT-GAAT-ATATAA-TTTCTTTTGCAAAACAAAATAA-ATATATAATTGTCGCGATAGCTACC-GAAtactagtatacgagaaggtggccgatcacatgcgcatctgtactagctcatgatctttccagctgattccatatcggaggtagaggaaaacttttctgcctgctgcacgattttcacgggtctcagcatatgcggggttacttttaacctttgttgcagtaagtgtaccgtnnnnnnnnnnnnnnnnnnnnnnnnnatcaaaatgt
gi|6 : gacaattcgctgcaataataaaAAAGGTCT-GTGCAATGCAA-TGCTA-TTTTTT----GATAGAATAAA-CAATCATAACTCAAAGTAATT-GAT--G-T-C-TGAAAATTT-GA---CGAA-ATACTAGGCTGAATTTAACAGAGATATTA-GC-AAAATC----TCCAAAT--CACAC-CTGAAACGTTATTTTGACTAATAGTCCTGGTTC--AGTTGCCA--ATATCGC-TG-TGACGTTCAC---C-GTCAT-GTTT--GAGGCCATTATC-GAAAG-AGAAAAAACAAGCGACGTA-ATGAGTCAGTTGA-ATTTTGCGACTA-GAT--A--GTTGTTTGT-T-GTT-TTT-TCAACGTATTTATAGATGTT-T--AAGAT--A-CTAA-AATTTAGT---GATCGTAGACAGTTTTTTCAGTCG------TAGTACATGTATTTTGGTGAT-CGCAATTG-TA-AAT---------------------TA----T-AC-------------CG----------T---G-T---A---------TAT-TGTTCTATTCG---GA-CGTGATG-AA-----------AAAAG-T-GCACATTATA-T--C--CATAACATTT-CACACTGAGGCCATTG-GAATTTTTTCCAGCATTGTG--AAACATAA-AATTATAAGG-AATGG-CTGAACACTGTGT-TATTAC--TTGATTTAACTT-AC--TAT--G-----T--TGAT--AA-CACATATATAAT-TATT-TCTCTGTATTTACGTATTTT--TCCT-C-CGACTGTAAGCC--ATACTGCC-----TCT--GAGA----G-AT----GAACGCGAATGAAAT--TTC-TG---------ACT-ATATTTT-TATTTTATTT-TA-CT-GTAGgaaaggttgcagtacctatttttacccggatttcaaccgtgccttgtcatttgtaggcctgaggttttcgaccacggtctacatag
gi|7 : TTAAA--GGCC-TCTAAGATTAA-TTAA-AATTTAGT---GATCGTTGAAAGTTTT--CAGTCG------TAGTA--------TTTGTGATCCGGCATTGCTA-AA-AT------------T------TA----T-AC-------------CG----------T---GAT---ATTG------TAT-T--GAT-TT-----GATCGTGCTG-AG-----------AAAAG-TTGCACATTATA-TTCC--CATAACATTCACCCAG---AGCCATGATAGAATTTTTCCA-CCATGTGAAAA-CATACAAAT-ATAGGGCAGTGG-CT-AACCCTG-TTATATACTCCTTG------ATTCACCATAC--A-----TA-TT-TTAAA-CAT---TATAATCTATTCTC-ATGTATTTACGTATTTT--TC-TACGCGACTG-AAACC--ATACTGCCACAAATCT--GAGA----GAAT----GAACG--AATGAAATTGTTCTTG---------ACTAATACTTT-TATTTTA-TTCTA-CTAGTAGGTACAGCCTCCGGAGTAGGTACAGACTGA---A-ATTCAGGGT----TGCA-AATAACCACTT--------C--------GCATA----TGC---GAGT---AATTTT-A-TTT-TGGGCCGC-GAACCAA-ATTGTGAAAATCCTC-TCGCCCAC--AT-GGCGAAT-----AAAACTT-------ACCCTC------TTTTAAAAA-ATC-CGC-C-CGG-TTGGGTTTGATCG-CTGC--ATTCA-CA--------------------------GCT-------AATACACATTTTCTATTTCCA-GAAATCTTT--------A-----AATCTGCAAAACAAG-----TGTGC-GTATTTACA-------ATGTATGCTAACAGAAT--Tt
gi|8 : --ATTGTTTGT-TTGTA-TTTCT-AACATATTTAAA--TGTT-TT-AAGAT--A-TTAA-AATTTAGT---GATCGTTGAAAGTTTT--CAGTTG------TAGTA--------TTCGTGAT-CGGCATTG-TA-AAT--------------T------TA----T-AT-------------CG----------T---GAT---ATTGGTTTGATAT-T--TCT-TTCG---GA-CGTG-TG-AG-----------AAAAG-TTACACATTATAAT--ATCCATAACATTC----------ACCATGG-AGAATGTTTCCAGCATTGTG--AA-CATAC-AA--ATAAGGCAGTGG-CTGAAGCCTG-GT-TATAAT--TTG------CTTTAC--TAC--A-----TATTT-T--AAACAT---TATAAT-TATT-TC-ATGTATTTACGTATTTT--TC-T-C-CGACTG-AAACCATATACTGCC-----TCTGCGAGATC--G-AT----GAAGG--GATGGAAT--TTC-TGATGTAGACTATT-ATACTTT-TATTTTA-TA-TT-CT-GTAGGTACAG--------------AC----TT----A-ATTCAGGGT----TGCA-AATAACCAC-TCGGCCACAC--------GCATA----TGC---GAAT---AATTTT-A-TTTTTGG---GC-G-ACCAA-ATTGTGAAAATCCTC-TCATCCAC--AT-GGCGTGT-----AAAACTT-------AC---C------TTTT--AAA-ACC-CGC-T-C-G-T--GGTTTGA-CG-CTGC--ATT-A-CGCTTGT-----------T---------G-CCAAATGAAATACACAATTT-TATTTCCA-GAAAT-TTTTAATGTGAA-----AA---GT-------G------GTGC-GTATTTACAT-------TGTATGT--ACAGTAT--TTTG-AA-CCGTTg
gi|9 : AAAAAAGAAAT--CT-G-TTTAGTGAAAG-GTT-AT--AAAT--GCCAC---C----AATAATC-GATTTACTGAAAATTTCATGAATT-A-TTAAT-GA-TTAATGAA---TTTGGAATAA-AT-A-TTTC-TTTGCTAAAC-AGAT-A-TTTTATAATTGTCGCGATAGATA-C-GAA
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|19 ): TAGCCGAACGAACAGGATGTCATGGCCGAGTACCTATTTAAACCCGTAGATAAAAACCGTGGGTTGCACTTGTCATTGTAGGCCGAGGTTTTCGACCCGACGGTCTAACCTCAGGTGA
Unaligned ( gi|20 ): ATAGAAGTGTATTCTCAGATTCATTTGAACTCATGAATTTGAAGTGATCATCAGAACAATTTTGATTAGTTTATTTATAA
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111 111111111111111111111111111111111111
lowQualScore : 1111 111 111 1111111 11 111 11 1111 2222 22222222 1111 22222222222222222222 111 111111 11111111 0000000000000000000000000000000000000000000000000000000000000000000 111111 11111 1 22222222222222 2 11111 1111 1 11111 22222222222222 1 11111 1111 1111 5555555 111 5555555555555555555555555555 2222222222222222222222222222222 1111 111111 2222222222222222222 000000000000000000000000000000000000 888888888888888888888888888888888888888 222222222 11 1 111 3333333 4444444 11 222222222 222222 222 111 1
lowQualScore : 4 4 0 4 3333 4 66 1 111 777 4444444 8 777 66 999 2 4 4 9999 2 66 4 4 55 55 77 8 55 4 4 4 4 111 4 00 55 66 4 0000 5 66 5 5555 777 5 0 33333333 1 4 77 4 2222 2 66 11111111111111111111 777 1 66 222222 66666666 2 4 4 4 0000000000000000000000000000000000000000000000000000000000000000000 5 222222 4 66 5 55555 55 0 88888888888888 5 1 5 33333 1 5 1 0000 0 5 66 5 11111 5 1 5 77 77 0 88888 44444444444444 99 5 5 5 5 5 66 5 0 55 5 66 22222 66 7777 5 2222 77 77 0000000 5 000 5 5 5 5 5 5 2 8888888888888888888888888888 8888 4 5555555555555555555555555555555 1 8888 5 9999 999 4 4 1 66 4 000000 0 5555555555555555555 77 4 4 888 4 4 666 4 8 66 555 222222222222222222222222222222222222 0 5 3 5 222222222222222222222222222222222222222 4 666666666 66 66 5 5 0 6 88 3 5 3 666 6 0 11 3 8 0 2222222 3 0 1111111 99 777 6 11 666666666 8 1 5 0 8 8 888888 6 88 0 222 111 0 8 8 0 8 1 2 0
lowQualScore : . . . . .... . .. . ... ... ....... . ... .. ... . . . .... . .. . . .. .. .. . .. . . . . ... . .. .. .. . .... . .. . .... ... . . ........ . . .. . .... . .. .................... ... . .. ...... ........ . . . . ................................................................... . ...... . .. . ..... .. . .............. . . . ..... . . . .... . . .. . ..... . . . .. .. . ..... .............. .. . . . . . .. . . .. . .. ..... .. .... . .... .. .. ....... . ... . . . . . . . ............................ .... . ............................... . .... . .... ... . . . .. . ...... . ................... .. . . ... . . ... . . .. ... .................................... . . . . ....................................... . ......... .. .. . . . . .. . . . ... . . .. . . . ....... . . ....... .. ... . .. ......... . . . . . . ...... . .. . ... ... . . . . . . . .
lowQualScore : 4 0 6 0 9999 4 11 0 888 777 8888888 0 888 44 333 6 4 4 4444 9 11 4 0 55 55 99 0 55 0 0 0 0 000 0 33 55 33 4 6666 0 99 0 0000 999 0 4 99999999 9 4 11 4 9999 6 11 66666666666666666666 888 9 11 888888 11111111 9 4 4 4 8888888888888888888888888888888888888888888888888888888888888888888 1 888888 4 99 0 88888 22 0 00000000000000 0 6 0 88888 0 0 4 6666 8 0 99 0 77777 7 0 7 00 99 7 00000 44444444444444 77 7 7 7 0 6 99 0 0 88 0 99 55555 99 5555 0 1111 99 99 7777777 7 000 7 7 7 7 7 7 5 4444444444444444444444444444 5555 0 2222222222222222222222222222222 2 6666 0 7777 000 4 4 1 11 4 888888 8 2222222222222222222 33 0 0 444 0 0 555 0 9 11 333 000000000000000000000000000000000000 4 0 2 0 222222222222222222222222222222222222222 4 000000000 11 11 0 0 2 7 33 7 5 2 000 7 8 88 2 0 8 5555555 2 2 2222222 22 555 7 00 888888888 0 4 0 8 0 0 444444 0 88 8 222 888 8 8 0 8 0 0 5 0
consensus : NAAGGGTCT-ATGCAATGCAA-TTCGA-TTTTCC----GGCAGAGTAAA-CA--CCTANTCCAATTAAAAT-NAT--A-T-CCTGAAAATTT-GA---CGAAGNTAC-AGGCNGAATC-AACGGAGATATTA-GCGAAAAAC----TCGAAA--CCACAC-CTGAACGGAT-TTTTGA--AAAAGTC--GGTTCTAAGC-GCCA--A-ATCGC-TG-TGACGT-CAC---GTC-GTGTATATC--GCCATCTTG-GATAG-AGAGAAA----GCG-TGTA--GA-TCAGCTGATAATATTTCGCGA-TA-TTTA-N--ATTGTTTGT-TTGTA-TTT-T-GACGTATTTANA--TGCT-T--AAGGT--A-TTNN-A-TTTAGTCGTGATCGTTGAAAGTTTT--CAGTCG------TAGTA--------TTCGTGAT-CGGCATTG-TA-AATAC------------T------TA----T-AC-------------CG----------T---G-T---AATG------TAT-T--TCT-TTCG---GA-CGTG-TG-AG-----------AAAAG-TTACACACCATA-T--A--CNTAACATTC-CCCAT---AGCCATNG-AGAATTTTTCCAGCCTTGTG--AA-CATAC-AAT-ACAAGGCAGTGG-CTGAANCCTG-GT-TATAAT--TTGCTTTA--C--TAC-A---TA-TT--TTAAN-CAT-TATAAT-TATT-TC-ATGTATTTACGTATTTT--TC-T-C-CGACTG-AAACC--ATACTGCC-----TCT--GAGA----G-AT----GAA--CGGATGAAAT--TTCTG-T-GTAG-AC---T-ATACTTT-TATTTTA-TT-TA-CT-GTAGGTACAG--------------ACA---TG----A-ATTCAGGGT----TGCA-AATAACCA----------C-T--------CG--------CATATGC---GAGTAATTTTATTTGTGGG-CGC-G-ACCAA-ATTGTGAAAATCCTCT-CGCCCAC--AT-GGCGAGT-----AAAACTT-------AC---C------TTTT-AAAA-ATC-CGC-T-C-G-T--NGTTTGA-CG-CTGC--ATT-A-CGTTT-T-----------T---------G-T-------AATACACATTTT-TATTTCCA-GAAAT-TTT--------A-----AA---GT-------G-----TGTGC-GTATTTACATT-----GTGTATGT--ACAGAAT--TTTG-AA-TCGTTTTCTC-TC--GTGAAGCTCGTGTTAAGAATTT-G-TTACGTGT-GAATATNTAACGAAGT-CGGGTTAGAAATTGCT-------ACCAATGC--AAAAAAAAAAAAAAAAAAAT--CA-G-TTTAGTGAAAG-GTTTATGAAAAT--GCCAC---C----AAAAATC-GTTTTACTGAAAGTTTTATGAATT-A-TGATTAGG-TTAATGAA-ATTTTGGAATAATAT-A-TTTCTTTTGCNAAAC-AAATAA-TTATATAATTGTCGCGATAGNTACC-GAACG
Reference ( family-926 ) : NAAGGGTCT-ATGCAATGCAA-TTCGA-TTTTCC----GGCAGAGTAAA-CA--CCTANTCCAATTAAAAT-NAT--A-T-CCTGAAAATTT-GA---CGAAGNTAC-AGGCNGAATC-AACGGAGATATTA-GCGAAAAAC----TCGAAA--CCACAC-CTGAACGGAT-TTTTGA--AAAAGTC--GGTTCTAAGC-GCCA--A-ATCGC-TG-TGACGT-CAC---GTC-GCGTATATC--GCCATCTTG-GATAG-AGAGAAA----GCG-TGTA--GA-TCAGCTGATGATATTTCGCGA-TA-TTTA-A--ATTGTTTGT-TTGTA-TTT-T-GACGTATTTANA--TGCT-T--AAGGT--A-TTNN-A-TTTAGTCGTGATCGTTGAAAGTTTT--CAGTCG------TAGTA--------TTCGTGAT-CGGCATTG-TA-AATAC------------T------TA----T-AC-------------CG----------T---G-T---AATG------TAT-T--TCT-TTCG---GA-CGTG-TG-AG-----------AAAAG-TTACACACCATA-T--A--CNTAACATTC-CCCAT---AGCCATNG-AGAATTTTTCCAGCCTTGTG--AA-CATAC-AAT-ACAAGGCAGTGG-CTGAANCCTG-GT-TATAAT--TTGCTTTA--C--TAC-A---TA-TT--T-AAT-CAT-TATAAT-TATT-TC-ATGTATTTACGTATTTT--TC-T-C-CGACTG-AAACC--ATACTGCC-----TCT--GAGA----G-AT----GAA--CGGATGAAAT--TTCTG-T-GTAG-AC---T-ATACTTT-TATTTTA-TT-TA-CT-GTAGGTACAG--------------ACA---TG----A-ATTCAGGGT----TGCA-AATAACCA----------C-T--------CG--------CATATGC---GAGTAATTTTATTTGTGGG-CGC-G-ACCAA-ATTGTGAAAATCCTCT-CGCCCAC--AT-GGCGAGT-----AAAACTT-------AC---C------TTTT-AAAA-ATC-CGC-T-C-G-T--NGTTTGA-CG-CTGC--ATT-A-CGTTT-T-----------T---------G-T-------AATACACATTTT-TATTTCCA-GAAAT-TTT--------A-----AA---GT-------G-----TGTGC-GTATTTACATT-----GTGTATGT--ACAGAAT--TTTG-AA-TCGTTTTCTC-TC--GTGAAGCTCGTGTTAAGAATTT-G-TTACGTGT-GAATATNTAACGAAGT-CGGGTTAGAAATTGCT-------ACCAATGC--AAAAAAAAAAAAAAAAAAAT--CA-G-TTTAGTGAAAG-GTTTATGAAAAT--GCCAC---C----AAAAATC-GTTTTACTGAAAGTTTTATGAATT-A-TGATTAGG-TTAATGAA-ATTTTGGAATAATAT-A-TTTCTTTTGCNAAAC-AAATAA-TTATATAATTGTCGCGATAGNTACC-GAACG
gi|1 : GAAAATTT-GA---CGAAGTTAT-AAGCAGAATC-AAAGGAGATATTA-GCGAAAAAC----TCGGAA--CCACAC-CTGAACGGAT-TTTTGA--AAAAGTC--GGTTCTA-GC-GCCA--A-ATCGC-TG-TGACGT-CAC---GTC-GT-TATATC--GCCATCTTG--AT-G-AGAGAAA----GCG-TGTA--GA-TCAGCTGATAAT--TTCGC-A-TA-TTTATATCATTGTCT-T-TTGT---TT-T-G--GTGTCTACA--TGCTAT--ATGGT--A-TTTT-A-TTTAGTCGTGATCGTTGAA-GTTTT--CAGTCG------TAGTA--------TTCGTGAT-CGGCATTG-TA-AATACG-----------TAA----TA----T-ACTTTTGATTTGATTCGA---------T---G-TTGAAATG------TAC-T--TCT-TTGG---GA--------------------------G-TTACAC-CCAAA-T--A--CTTAACATTC-CTCAT---AGCCATTG-AGAATTTTTCCAGCCTTGTG--AA-CATAC-A-T-ACAAGACAGTGA-CCGAAGCCTG-GT-GATAAT--TTGCTTCA--C--TAC-A---TA-TT--TTAAT-CAT-TAAAAT-TATT-TC-AT--ATTTACGTATTTT--TC-T-C-GGAGTG-AAACC--ATACTGCC-----TCT--GAGA----G-ATCGATGAA--CAGATGAAAT--TTCTG-TTGTAG-AT---T-ATATTTT-TATTTCA-TT-TC-AT-GTAAGTACAG--------------ACA---TGTATAATATTCAGAGT----TGCA-AATTACCA----------C-T--------CA--------CATATATAATGAGTAATTTTATTTGTGGG-CG----ACCAA-ATTGTGAAAATCTTCT-CGCCAAC--AT-GGCGAGT-----AAAACTT-------AG---T------TTTT-AAAA-ATC-CGC-T-C-G-T--TTTTTGA-CG-CTGC--ATA-A-CGTTTGTTTGTTGCCGAAT---------G-T-------AATTCACATTTT-TAT------G-------------------------------------------GTGC-GTA-TTA-ATT-----A-GTAT--------AAT--TTTG-AA-ATGTTTTCTC-TCGAGTGAAGCTCAACTT-AGTATTT---TAACATGTAGCATACGTA
gi|1 : TT-GCTTACGTGT-GACTATA-AACGAAGT-CGGGTTAGAAATTGCtagacctatagggaatgtcaatctccaggaaaattactgcaggaatgtaaaattgttgaaaatgtgatacataaaaatgtatatatataaccttttcatgtaacagccaattaaaattaatcagatcgaatatttatattgtataccatgaaagtgtcttgcttacgtgtgactataaacgaagtcgggttagaaattgcagtttagtgaaaggtttatgaaaatgccataaaaaaaaatcaatatactgaaagttttatgaattatgatttttgaaattctggaataatatttcttttgcaaacaaataattatataattgtcacgatagatactagaatgttgcaagtatatgcgcatgtattttaaccgtacacttgtcacttagtgttttgcaatatacaatttaaaaatttccatgcagggaggtagaggaacactttctgcctgctgcacgatttccataggtctcagcatatgtggttacttttaacttttgttttgcagtaagcataacgtgtattttatagtaccatctaaatagagcgaaatttcgcaatttttgggatctgttttggaagtcatatgcacacattgaaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnctttctgggcggggttttaagttgatttatacaggtttagaaagttcaaacacat
gi|1 : gaaaatttgacgaagttataagcagaatcaaaggagatattagcgaaaaactcggaaccacacctgaacggatttttgaaaaagtcggttctagcgccaaatcgctgtgacgtcacgtcgttatatcgccatcttgatgagagaaagcgtgtagatcagctgataatttcgcatatttatatcattgtcttttgttttggtgtctacatgctatatggtattttatttagtcgtgatcgttgaagttttcagtcgtagtattcgtgatcggcattgtaaatacgtaatatacttttgatttgattcgatgttgaaatgtacttctttgggagttacacccaaatacttaacattcctcatagccattgagaatttttccagccttgtgaacatacatacaagacagtgaccgaagcctggtgataatttgcttcactacatattttaatcattaaaattatttcatatttacgtatttttctcggagtgaaaccatactgcctctgagagatcgatgaacagatgaaatttctgttgtagattatatttttatttcatttcatgtaagtacagacatgtataatattcagagttgcaaattaccactcacatatataatgagtaattttatttgtgggcgaccaaattgtgaaaatcttctcgccaacatggcgagtaaaacttagtttttaaaaatccgctcgttttttgacgctgcataacgtttgtttgttgccgaatgtaattcacatttttatggtgcgtattaattagtataattttgaaatgttttctctcgagtgaagctcaacttagtattttaacatgtagcatacgtatagacctatagggaatgtcaatctccaggaaaattactgcaggaatgtaaaattgttgaaaatgtgatacataaaaatgtatatatataaccttttcatgtaacagccaattaaaattaatcagatcgaatatttatattgtataccatgaaagtgtcAGAAATTGCA-G-TTTAGTGAAAG-GTTTATGAAAAT--GCCATAAAA----AAAAATC-AATATACTGAAAGTTTTATGAATT-A-TGATT----TT--TGAA-ATTCTGGAATA--AT-A-TTTCTTTTGC-AAAC-AAATAA-TTATATAATTGTCACGATAGATACTAGAATGagtttagtgaaaggtttatgaaaatgccataaaaaaaaatcaatatactgaaagttttatgaattatgatttttgaaattctggaataatatttcttttgcaaacaaataattatataattgtcacgatagatactagaatgttgcaagtatatgcgcatgtattttaaccgtacacttgtcacttagtgttttgcaatatacaatttaaaaatttccatgcagggaggtagaggaacactttctgcctgctgcacgatttccataggtctcagcatatgtggttacttttaacttttgttttgcagtaagcataacgtgtattttatagtaccatctaaatagagcgaaatttcgcaatttttgggatctgttttggaagtcatatgcacacattgaaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnctttctgggcggggttttaagttgatttatacaggtttagaaagttcaaacacat
gi|10 : gaaaatttgacgaagttataagcagaatcaaaggagatattagcgaaaaactcggaaccacacctgaacggatttttgaaaaagtcggttctagcgccaaatcgctgtgacgtcacgtcgttatatcgccatcttgatgagagaaagcgtgtagatcagctgataatttcgcatatttatatcattgtcttttgttttggtgtctacatgctatatggtattttatttagtcgtgatcgttgaagttttcagtcgtagtattcgtgatcggcattgtaaatacgtaatatacttttgatttgattcgatgttgaaatgtacttctttgggagttacacccaaatacttaacattcctcatagccattgagaatttttccagccttgtgaacatacatacaagacagtgaccgaagcctggtgataatttgcttcactacatattttaatcattaaaattatttcatatttacgtatttttctcggagtgaaaccatactgcctctgagagatcgatgaacagatgaaatttctgttgtagattatatttttatttcatttcatgtaagtacagacatgtataatattcagagttgcaaattaccactcacatatataatgagtaattttatttgtgggcgaccaaattgtgaaaatcttctcgccaacatggcgagtaaaacttagtttttaaaaatccgctcgttttttgacgctgcataacgtttgtttgttgccgaatgtaattcacatttttatggtgcgtattaattagtataattttgaaatgttttctctcgagtgaagctcaacttagtattttaacatgtagcatacgtatagacctatagggaatgtcaatctccaggaaaattactgcaggaatgtaaaattgttgaaaatgtgatacataaaaatgtatatatataaccttttcatgtaacagccaattaaaattaatcagatcgaatatttatattgtataccatgaaagtgtcttgcttacgtgtgactataaacgaagtcgggttAAGGGTCT-ATGCAATGCAA-TTCGA-TTTTCC----AGCAGAGTAAA-CA--CCTAATCCAATTAAAA---AT--A-T-ACTGAAAATTT-GA---CGAAGTTAT-AAGCAGAATC-AACGGAGATATTA-GCGAAAAAC----TCGAAA--CCACAC-CTGAACGGAT-TTTTGA--AAAAGTC--GGTTCT-AGC-GCCA--A-ATCGC-TG-TGACGT-CAC---GTC-GTGTATATC--GCCATCTTG-GATAG-AGAGAAA----GCG-TGTA--GA-TCAGCTGATAAT-TTTCGCGA-TA-TTTA-T--ATCATTTGTCTTTTG-ATT-T-GGTGCATTTACA--TGCT-A--TAGGT--ATTTTT-A-TTTAGTCGTGATCGTTGAAAGTTTT--CAGTCGTAGCTATAGTA--------TTCGTGAT-CGGCATTG-TA-AATA-------------T------CA----T-A--------------CG--------------G-T---AATA------TATAT--TGG-TTTGATCGA-TGT--TG-AATGTACTTCTTTGGGAG-TTACAC-CCATA-T--A--CTTAACATTC-CCCAT---AACCAT-G-AGAATTTTCCCAGCCTTGTG--AA-CATAC-ttgcaagtatatgcgcatgtattttaaccgtacacttgtcacttagtgttttgcaatatacaatttaaaaatttccatgcagggaggtagaggaacactttctgcctgctgcacgatttccataggtctcagcatatgtggttacttttaacttttgttttgcagtaagcataacgtgtattttatagtaccatctaaatagagcgaaatttcgcaatttttgggatctgttttggaagtcatatgcacacattgaaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnctttctgggcggggttttaagttgatttatacaggtttagaaagttcaaacacat
gi|11 : TGAACGGAT-TTTTGA--AAAAGTC--GGTTCTA-GT-GCCA--A-ATCGC-TG-TGACGT-CAC---GTT-GTGTATATC--GCCATCTTG-AATAG-AGAGAAA----GCG-TGTA--AA-TCAGCTGATAAT-TTTCGCGA-TA-TTTA----------TAT-TTATG-TTT-T-GGTGCATTTACA--TGCT-A--TAGGT--A-TTTTTA-TTTAGTCGTGATCGTTGAAAGTTTT--CAGTCG------TAGTA--------TTCGTGAT-CGGCATTT-TA-AATAC------------CGTAATATA----T-AT-------------TGATTTGATCGAT---G-TTG-AATG------TAC-T--TCT-TTGG---GA-TGCG-TGGAA-----------AAAAG-TTACAC-CCATA-T--A--CTTAACATTC-CCCAT---AGCCATTG-AGAATTTTTCCAGCCTTGTG--AA-CATAC--AT-ACATGGCAGTGG-CTGAAACCTG-GT-GATAAT--GTGCTTTA--C--TAC-A---TATTT--T-AAT-CAT-TATAAT-TATT-TC-A--TATTTACGTATTTT--TC-T-C-GGACTG-AAACC--ATACTGCA-----TCT--GAGA----G-A
gi|12 : AAGGGTCT-ATGCAATGCAA-TTCGA-TTTTCC----AGCAGAGTAAA-CA--CCTAATCCAATTAAAAC-TAT--A----CTGAAAATTT-GA---CGAAGTTAT-AAGCAGAATC-AACGGAGATATTA-GCGAAAAAC----TCGAAA--CCACAC-CTGAACGGAT-TTTTGA--AAAAGTC--GGTTCTA-GC-GCCA--A-ATCGC-TG-TGACGT-CAC---GTC-GTGTATATT--GCCATCTTG-GATAG-AAAGAAA----GCG-TGTA--GA-TCAGCTGATAAT-TTTCGCGA-TA-T-----------------TTATA-TC---------ATTTGT-----CT-T-----------TTGT---TTTGGTCGTGATCGTTGAAATTTTC--CAGTCG------TAGTA--------TTCGTGAT-CTGCATTG-TATAA-----------------------A----A-AC-------------CG----------TACGG-T---AATA------TAT-
gi|13 : aGCGAAT-----AAA-CTT-------AC---CGT----TTTT-AAAA-ATCGCGC-C-C-G-T--CTGTTGA-CGGCTCC--ATT-A-CGTT----------------------------------AATA-ACATTCT-T-TTTCCA-GAAAT-TTTTAATGCG-A-----AA---AA-------G-----TGTGC-GTATTTACAT-------TGTATGT--ACAGAAGAATTTG-AAGTCGTTTCTTCTTC--GTAAAGCTCGTGTT-AGAA-TT-G-TTACGTGG-GAAattgatttgat
gi|13 : AGTTCGGGTTAGAAATTGCTTAGCCATGCCAATAA--AAAAAAAAAAAAAAAAAATC--CA-T-GTTAGTGGAAattagtcagtaacttcgagaaagtttggtgtgtgtatggagcagttcgggttagaaattgcttagccatgccaataaaaaaaaaaaaaaaaaaaatccatgttagtggaatccttgaatccacgttagagtggtttttaatggtatttttct
gi|14 : gcgaataaacttaccgtttttaaaaatcgcgcccgtctgttgacggctccattacgttaataacattctttttccagaaatttttaatgcgaaaaagtgtgcgtatttacattgtatgtacagaagaatttgaagtcgtttcttcttcgtaaagctcgtgttagaattgttacgtgggaaattagtcagtaacttcgagaaagtttggtgtgtgtatggagcAAGGGTCT-ATGCA-TGCAA-TTCGA-TTTTTA----AGCATAGTAAA-CA--CCTATTCCAATAAAAAC-TAT--A----CTGAAAATTT-GA---CGAAG------------ATC-AACGGAGATATTA-GCGAAAAAC----TCGAAA--CTACAC-CTGAACAGAT-ATTTGA--AAAAGTC--GGTTCT-AGC-GCCA--A-ATCGC-TG-TGACGT-CAC---GTC-GTGTATATC--GCCATCTTG-GATAG-AGAGAAA----GCG-TGTA--GA-TCAGTTGAT-ATATTTTGCGA-TA-TTTA-T--A----TCAT-TTGTA-TTT-T-Gtccttgaatccacgttagagtggtttttaatggtatttttct
gi|15 : aTCT-ATGCAATGCAAATTCGA-TTTTCCA---GGCAGAGTAAA-CA--CCTAATCCAATTTAAA--CAT--A-TATCTGAAAATTTGGA---CG-ACATAT-AAGCAGAATC-AATGGAGATATTA-GCGAAAAACGCGACCGAAA--CCACAT-CTGAACGGA--TTTTGA--AAAAGTC--GGTTTCTAGC-GCCA--A-ATCGCTTGTTGACGT-CAC---GTCTGTGTATATC--GCCATCTTGAGATAG-AGA
gi|16 : TTAAAA--AATCGA-T-CCTGAAAATTT-TATTGCGATCGTAC-A---TGTACT-ATTGGAGATATTT-GGGGTAA------TCACAATTTCACAC-CTGAAC-GAC-TTTTAA--ACCGGGC--TGTTTT-GGT-GCGATTA-AT-GT-CG-TGACGT-CACGAGGTC-A---ACATC--GCC
gi|17 : taaaagatatctgcaaccccggtcatttgttttaaatttggagggttacagt-ATGCAGGGTATGTTGCA-AATAACCAGTTGCCCACTC-T--------TG--------CAAATGA---GAATA----TATTT-TGTG-TGC-A-ACCAA-AATATGAAAATCCTAT-TGCCAAC--AT-GGTGTGT-----AAAATTT-------AC---CGTAACTTTTC-CAAA-ATC-CAC-T-T-G-C--AGTTTAA-CA-TTAC--ATT---TGTTT-
gi|18 : AGGGT----TGCA-AATAACCA----------C-T--------CG--------CAAATGC---GAGTAATTTTATTTGTGG---GC-G-ACCAG-TTTATGAAAGTTCTCT-CGCCCAC--AA-GGCGAGT-----AAAAATTTATCGTAAC---T------TTTC-TGGA-ATT-CGT-T-C-A-C--AGTTTGA-agaaggtttcaacttctga
gi|2 : AAAGGTCT-GTGCAATGCAA-TGCTA-TTTTTT----GATAAAATAAAATA--TCTACTCAAA--AAAAT-GAT--G-T-CCTGAAAATTT-GA---CGAAGATAC-TGACTGAATT-AACAGAGATATTACGCGAAAAAC----TC-CAA--TCACAC-CTGAACGTAT-TTTTGA--AAAAGCC--GGGTTTAAGC-GCCA--A-ATCGC-TG-TGACGT-CAC-----C-GCATGTTTTGAGCCATATCG-AA-AGTAGAAAAA----CAG-TACG--AA-TGAGCAGTTGA-ATTTCGCT--TAGTTTG-A--ATTGTTTGT-TTGTA-TTT-TCAACGTATTTAAA--TGTT-T--AAGAT--A-TTAA-A-TTT----GTGATCGTTGAAAGTTTT--CAGTCG------TAGTA--------TT-GTGAT-CGGCACTG-TA-AAT--------------T------TA----T-AC-------------CG----------T---G-T---ATTG------TAT-T--TCT-TTC----GA-CGTG-TG-AG-----------AAAAG-TTGCAC-TTATA-T--C--CATAACATTC-ACTAG---AGCCATGG-AGAA-TTTTCCAGCATTGTG--AA-CATAC-AAT-ATAAGGCAGTGA-CTGAACCCTG-GT-TATAAT--TTGATTTA--C--TAC-----------------------ATAAT-TATT-TC-ATGCATTTACGTATTTT--TC-T-C-CGACTG-AAA-C--ATATTGCC-----TCT--GAGA----G-AT----GAA--CGGATGAAAT--TTCT-------G-AC---T-ATACTTT-TATTTTA-TT-TA-CT-GTAGGTACAG--------------AC----TG----A-ATTCAGGGT----TGCA-AATAACCA----------C-T--------CG--------CATATGC---GAGTAA-TTTATTTGTGGG-CGCGG-ACCAA-ATTGTGAAAATCCTCT-CCGCCAC--AT-GGCGAAT------AAACTT-------AC---C------TTTT-AAAA-ATC-CGC-C-C-G-T--CGTTTGA-CG-CTGC--ATC-A-CA--------------------------G-T-------AATACACATTTT-TATTTCCA-GAAAT------------------AA---GT-------G-----TGTGC-GTATTTACATTGTACAGTGTATGT--AC-GAAT--TTTG-AA-TCGTTTTCTC-TC--GT-AAGCTCGTGTTAAGAATTT-G-TTACGTGT-GAATATTTAACGAAGT-CGGGTTAGAAATTGCT-------ACCAATGC-------AAAAAAAAAAAAAAT--CA-G-TTTAGTGAAAG-ATTTATGAAAAT--GCCAC---C----AAAAATC-GTTTTACTGAGAGTTTTATG-ACT-ATTGATTAGGCCTAATGAA-ATTTTGG-ATAATAT-ATTTTCTTTTGCAAAAC-AAATAA-CTATATAATTGTCGCGATAGCTACC-GAACGatcaacttttacttgcactttcg
gi|21 : tAGGATATCATGCAATGAAA-TGCGATTTTTTT----GGTAGAATAAA-CA--TCTAT--CAA--GAAATAAAC--ACT-TCCGAAAAATT-Ga
gi|22 : TTCAGGGT----TGCA-AATAACCA----------C-T--------CGTCCACTTGCATATGC---GAGTAATTTTATTTGT
gi|23 : ct--------A-----AA---GT-------G------GTGC-GTATTTACATT-----GT--ATGT--ACAGAAT--TTTG-AA-TCG
gi|24 : gcgaaTGCAA-TTCGA-TTTTCC----AGCAGAGTAAA-CA--CCTAATCCAAT
gi|25 : AAGGGTCT-ATGCAATGCAA-TTCGA-TT
gi|3 : taAAGGGTCT-ATGCAATGAAA-TGCGA-TTTTTTTTTTGGTAGAATAAA-CA--TCTACTCAAAT--AAAT-AAT--G-T-CCTGAAAATTTTGA---CGAAGATAC-TGGCTGAATT-AACAGAGATATTA-GCGAAAAAC----TCCAA---TTATACACTGAAAGTAT-TTTTGA--AATAGTC--GGAT-TAAGCCGC----A-ATCGC-TG-TGACGT-CAC---A-----------C--AC---------ATAA-ACAGCAA----G---TACA--GA-TCAACAGTTGG-ATGTCGCTT-TG-TTTG-A--ATTGTTTGT-TTGTAGTTT-T-AACGTACT---A--T----T--AA----------A-A-TTTAGT---GATCGTTGAA-GTTTT--CAGTCG------TAGAA--------TTGGTGAT-CG-CATTG-TA-AATACGCGTGATATATAT------TAGATTTGAT-------------CGAA--------T---G-TTG-AATG------TAC-T--TCT-TTGG---GA-CGCG-TG--G-----------AAAAGATTACAC-CCATA-T--A--CTTAACATTC-CC-AT---AGCTGT-G-ATAGTTTTTCCAGTCTTGTG--AA-CATAC-A-T-ACAAGGCAGTGGGCTGAAGCCTG-GT-GATAAT--TTGCTTTA--C--TGC-AATATA-TT--TTAAT-CAT-TATGAT-TATT-TC-AT--ATTTA-GTATTTT--TC-T-C-GGACTG-AAACC--ATACTGCC-----TCT--GAGAGATCG-AT----GAA--CAGATGAAAT--TTCTGTT-GTAGAAA---T-ATACTTT-TATTTTA-TT-TA-CT-GTAGGT--AG--------------ACA---TA----ATATTCAGGGT----TGCA-AATAA-CA----------CAT--------CT--------AAT-------GAGT-ATTTTATTTGTGA---GT-G-ACCAA-ATTGTGAAAAT-CTCT-CGCTCACATAT-GGCGAGT------AAACTT-------AC---T------TTTT-AAAAGATC-CGCATGC-GTT--CTTTTGA-CG-CTGC--A-T-A-CGTTTGTTGCCGAG----T---------G-T-------AAT-CATATTTT-TATTTCGA-GAAAT-TTT--------AATGTGAA---GT-------G------GTGC-GTATCAACAT-------TGTATGT--ACAGAAT--TTTG-AA-T--TTTTCTC-GA--GTGAAGCTC
gi|4 : taGGGT----TGCA-AATAACCA----------C-T--------CG--------C-----C------TAATTT-ATTTTTT-----C----CCAA-ATT-TGAAAATCCTCT-AGTCCAC--ATTGGCGAGTTGCCTAAAACTT---------------------TT-CAAA-ATC-GGG-T-C-G-T--GGTTTCA-CGGCTGCCAATT-AACGTTT-T-----------TTTGCCGAATG-T-------AATACACATTTC-C--CCCCAAGAAAT-TTC--------A-----CAT--GT-------GAAAAATGTGCCGTATTATCATT-----GT--ATGT--GCAGAAT--TTTT-AA-CTGTTTTTCC-TCAAGTGGAa
gi|4 : cACGTGC-GAA-ATATACCGAAGT-CGGGTTAGAAAATTCT-------ACC--CCC---------------CAAAAAT--CA-GTTTTAGTGAAAG-GTTTATGAAataatcagagacgtacataatattatagtacacacataattatacatgtatagcgaaagtcgatctcttagaaaattactgcaggaacgtaaaattgttgcaaatgtgtacttaaagatagatctataaatcaaaacttattttgtaatagtaaattaaattaatcagattgaatctttatattgtatgcatatgccgtttaattgtcttgcgccacgtgcgaaatataccgaagtcgggttagaaaattctaccccccaaaaatcagttttagtgaaaggtttatgaattatgattaatgaaattttggaattaatctttcttttgccaaagaaataatttatttaattgttgcgatatactagtatacgagaaggtggccgatcacatgcgcatctgtactagctcatgatctttccagctgattccatatcggaggtagaggaaaacttttctgcctgctgcacgattttcacgggtctcagcatatgcggggttacttttaacctttgttgcagtaagtgtaccgtnnnnnnnnnnnnnnnnnnnnnnnnnatcaaaatgt
gi|4 : cgggttgcaaataaccactcgcctaatttattttttcccaaatttgaaaatcctctagtccacattggcgagttgcctaaaacttttcaaaatcgggtcgtggtttcacggctgccaattaacgtttttttgccgaatgtaatacacatttccccccaagaaatttcacatgtgaaaaatgtgccgtattatcattgtatgtgcagaatttttaactgtttttcctcaagtggaataatcagagacgtacataatattatagtacacacataattatacatgtatagcgaaagtcgatctcttagaaaattactgcaggaacgtaaaattgttgcaaatgtgtacttaaagatagatctataaatcaaaacttattttgtaatagtaaattaaattaatcagattgaatctttatattgtatgcatatgccgtttaattgtcttgcgccG-GGTTA-GAAAAT--TCTAC---CCCCCAAAAATCAGTTTTAGTGAAAGGTTTATGAATT-A-TGA------TTAATGAA-ATTTTGGAATTA-AT-C-TTTCTTTTGCCAAAG-AAATAATTTATTTAATTGTTGCGATAttatgattaatgaaattttggaattaatctttcttttgccaaagaaataatttatttaattgttgcgatatactagtatacgagaaggtggccgatcacatgcgcatctgtactagctcatgatctttccagctgattccatatcggaggtagaggaaaacttttctgcctgctgcacgattttcacgggtctcagcatatgcggggttacttttaacctttgttgcagtaagtgtaccgtnnnnnnnnnnnnnnnnnnnnnnnnnatcaaaatgt
gi|5 : cgggttgcaaataaccactcgcctaatttattttttcccaaatttgaaaatcctctagtccacattggcgagttgcctaaaacttttcaaaatcgggtcgtggtttcacggctgccaattaacgtttttttgccgaatgtaatacacatttccccccaagaaatttcacatgtgaaaaatgtgccgtattatcattgtatgtgcagaatttttaactgtttttcctcaagtggaataatcagagacgtacataatattatagtacacacataattatacatgtatagcgaaagtcgatctcttagaaaattactgcaggaacgtaaaattgttgcaaatgtgtacttaaagatagatctataaatcaaaacttattttgtaatagtaaattaaattaatcagattgaatctttatattgtatgcatatgccgtttaattgtcttgcgccacgtgcgaaatataccgaagtcC-ATGTATTGTCACATTTTATTC-TTN-NNNNNN-NNNNN--NNNNNNNN-----NNN--NNGA----A-TT----GAA--CGGATGAAAT--TTCTG--------AC---T-AT-CTTTATATTTTA-TT-TATCT-GTAGGTA-AG--------------AC----TG----A-ATT-AGGGT----TGCACAATAAC-A----------C-T--------CGG-------CAAATG----GAGTAATTTATTTTGTGGG-GGC-G-GACAATAATGTGAAAATCCTCTTCGCC-AC--AT-GG-GAAT-----AAA-TTT-------AC---C------TTTT-AAAA-ATC-CGC---C-G-T--CGTTTGA--G--TCC--ATT-A-AA--------------------------G-T-------CA-ATACATGTT-TATTT-CA-GAATT-TTTTATGCGA-A-----AA---GT-------G------GTGC-GTATTTAC-TT-----G-GCATGT--ACAAGAT--TTTGAAA-TCGTTTTCTC-TC--GTAAAGCTCGTGTTAAGAATTTAG-TTACGTGT-GAATATTTAACG-AGT-CGGGTAAG-AATTG-T-------ACCAATGCAAAAAAAAAAAAAAAAAAAAAT--CAGG-TTTAGTGACAGAATTTATGAAAATTGGCCAC---C-----AAAATC-GTTTTA-TGAGAGTTTTATGAGTTAA-TGATTAGG-CCTATGAAGATTTT-GAAT-ATATAA-TTTCTTTTGCAAAACAAAATAA-ATATATAATTGTCGCGATAGCTACC-GAAtactagtatacgagaaggtggccgatcacatgcgcatctgtactagctcatgatctttccagctgattccatatcggaggtagaggaaaacttttctgcctgctgcacgattttcacgggtctcagcatatgcggggttacttttaacctttgttgcagtaagtgtaccgtnnnnnnnnnnnnnnnnnnnnnnnnnatcaaaatgt
gi|6 : gacaattcgctgcaataataaaAAAGGTCT-GTGCAATGCAA-TGCTA-TTTTTT----GATAGAATAAA-CAATCATAACTCAAAGTAATT-GAT--G-T-C-TGAAAATTT-GA---CGAA-ATACTAGGCTGAATTTAACAGAGATATTA-GC-AAAATC----TCCAAA--TCACAC-CTGAAACGTTATTTTGACTAATAGTCCTGGTTC--AGTTGCCA--ATATCGC-TG-TGACGTTCACC--GTC-ATGTTTGAG--GCCATTATC-GAAAG-AGAAAAAACAAGCGACGTAATGAGTCAGTTGA----ATTTTGCGACTA-GATA-G---TTGTTTGT-T-GTT-TTT-TCAACGTATTTATAGATGTT-T--AAGAT--A-CTAA-AATTTAGT---GATCGTAGACAGTTTTTTCAGTCG------TAGTACATGTATTTTGGTGAT-CGCAATTG-TA-AAT---------------------TA----T-AC-------------CG----------T---G-T---A---------TAT-TGTTCTATTCG---GA-CGTGATG-AA-----------AAAAG-T-GCACATTATA-T--C--CATAACATTT-CACACTGAGGCCATTG-GAATTTTTTCCAGCATTGTG--AAACATAA-AATTATAAGG-AATGG-CTGAACACTGTGT-TATTAC--TTGATTTAACT--TACTA---TG-TTGAT-AACACATATATAAT-TATT-TCTCTGTATTTACGTATTTT--TCCT-C-CGACTGTAAGCC--ATACTGCC-----TCT--GAGA----G-AT----GAACGCGAATGAAAT--TTCT-------G-AC---T-ATATTTT-TATTTTATTT-TA-CT-GTAGgaaaggttgcagtacctatttttacccggatttcaaccgtgccttgtcatttgtaggcctgaggttttcgaccacggtctacatag
gi|7 : TTAAA--GGCC-TCTAAGATTAA-TTAA-AATTTAGT---GATCGTTGAAAGTTTT--CAGTCG------TAGTA--------TTTGTGATCCGGCATTGCTA-AA-AT------------T------TA----T-AC-------------CG----------T---GAT---ATTG------TAT-T--GAT-TT-----GATCGTGCTG-AG-----------AAAAG-TTGCACATTATA-TTCC--CATAACATTCACCCAG---AGCCATGATAGAATTTTTCCA-CCATGTGAAAA-CATACAAAT-ATAGGGCAGTGG-CT-AACCCTG-TTATATACTCCTTGATTCA--CCATAC-A---TATTT--T-AAA-CAT-TATAATCTATTCTC-ATGTATTTACGTATTTT--TC-TACGCGACTG-AAACC--ATACTGCCACAAATCT--GAGA----GAAT----GAA--CGAATGAAATTGTTCT--T----G-AC---TAATACTTT-TATTTTA-TTCTA-CTAGTAGGTACAGCCTCCGGAGTAGGTACAGACTGA---A-ATTCAGGGT----TGCA-AATAACCA----------CTT--------CG--------CATATGC---GAGTAATTTTATTT-TGGGCCGC-GAACCAA-ATTGTGAAAATCCTCT-CGCCCAC--AT-GGCGAAT-----AAAACTT-------ACCCTC------TTTTAAAAA-ATC-CGC-C-CGG-TTGGGTTTGATCG-CTGC--ATTCA-CA--------------------------GCT-------AATACACATTTTCTATTTCCA-GAAATCTTT--------A-----AATCTGCAAAACAAG-----TGTGC-GTATTTACA-------ATGTATGCTAACAGAAT--Tt
gi|8 : --ATTGTTTGT-TTGTA-TTTCT-AACATATTTAAA--TGTT-TT-AAGAT--A-TTAA-AATTTAGT---GATCGTTGAAAGTTTT--CAGTTG------TAGTA--------TTCGTGAT-CGGCATTG-TA-AAT--------------T------TA----T-AT-------------CG----------T---GAT---ATTGGTTTGATAT-T--TCT-TTCG---GA-CGTG-TG-AG-----------AAAAG-TTACACATTATAAT--ATCCATAACATTC----------ACCATGG-AGAATGTTTCCAGCATTGTG--AA-CATAC-AA--ATAAGGCAGTGG-CTGAAGCCTG-GT-TATAAT--TTGCTTTA--C--TAC-A---TA-TT--TTAAA-CAT-TATAAT-TATT-TC-ATGTATTTACGTATTTT--TC-T-C-CGACTG-AAACCATATACTGCC-----TCTGCGAGATC--G-AT----GAA--GGGATGGAAT--TTCTGAT-GTAG-ACTATT-ATACTTT-TATTTTA-TA-TT-CT-GTAGGTACAG--------------AC----TT----A-ATTCAGGGT----TGCA-AATAACCA----------C-TCGGCCACACG--------CATATGC---GAATAATTTTATTTTTGG---GC-G-ACCAA-ATTGTGAAAATCCTCT-CATCCAC--AT-GGCGTGT-----AAAACTT-------AC---C------TTTT--AAA-ACC-CGC-T-C-G-T--GGTTTGA-CG-CTGC--ATT-A-CGCTTGT-----------T---------G-CCAAATGAAATACACAATTT-TATTTCCA-GAAAT-TTTTAATGTGAA-----AA---GT-------G------GTGC-GTATTTACAT-------TGTATGT--ACAGTAT--TTTG-AA-CCGTTg
gi|9 : AAAAAAGAAAT--CT-G-TTTAGTGAAAG-GTT-AT--AAAT--GCCAC---C----AATAATC-GATTTACTGAAAATTTCATGAATT-A-TTAAT-GA-TTAATGAA---TTTGGAATAA-AT-A-TTTC-TTTGCTAAAC-AGAT-A-TTTTATAATTGTCGCGATAGATA-C-GAA
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|19 ): TAGCCGAACGAACAGGATGTCATGGCCGAGTACCTATTTAAACCCGTAGATAAAAACCGTGGGTTGCACTTGTCATTGTAGGCCGAGGTTTTCGACCCGACGGTCTAACCTCAGGTGA
Unaligned ( gi|20 ): ATAGAAGTGTATTCTCAGATTCATTTGAACTCATGAATTTGAAGTGATCATCAGAACAATTTTGATTAGTTTATTTATAA
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111 111111111111111111111111111111111111
lowQualScore : 1111 111 111 1111111 11 1111 11 22222 1111 22222222222222222222 111 111111 11111111 0000000000000000000000000000000000000000000000000000000000000000000 111111 11111 1 22222222222222 2 11111 1111 1 11111 1111 11111 1 11111 1111 1111 5555555 111 5555555555555555555555555555 2222222222222222222222222222222 1111 111111 2222222222222222222 000000000000000000000000000000000000 888888888888888888888888888888888888888 222222222 11 1 111 3333333 4444444 11 222222222 222222 222 111 1
lowQualScore : 4 4 0 4 3333 4 66 1 111 777 4444444 8 777 66 999 2 4 4 9999 2 66 4 4 55 55 77 8 55 4 4 4 4 4 0 4 66 66 0000 5 11 5 55555 777 5 1 666 2 8 88 4 2222 4 66 11111111111111111111 777 1 66 222222 66666666 2 4 4 4 0000000000000000000000000000000000000000000000000000000000000000000 5 222222 4 66 5 55555 55 0 88888888888888 5 1 5 33333 1 5 1 0000 0 5 66 5 11111 5 1 5 77 77 0 88888 5555 55555 5 5 5 5 5 66 5 0 55 5 66 22222 66 7777 5 2222 77 77 0000000 5 000 5 5 5 5 5 5 2 8888888888888888888888888888 8888 4 5555555555555555555555555555555 1 8888 5 9999 999 4 4 1 66 4 000000 0 5555555555555555555 77 4 4 888 4 4 666 4 8 66 555 222222222222222222222222222222222222 0 5 3 5 222222222222222222222222222222222222222 4 666666666 66 66 5 5 0 6 88 3 5 3 666 6 0 11 3 8 0 2222222 3 0 1111111 99 777 6 11 666666666 8 1 5 0 8 8 888888 6 88 0 222 111 0 8 8 0 8 1 2 0
lowQualScore : . . . . .... . .. . ... ... ....... . ... .. ... . . . .... . .. . . .. .. .. . .. . . . . . . . .. .. .... . .. . ..... ... . . ... . . .. . .... . .. .................... ... . .. ...... ........ . . . . ................................................................... . ...... . .. . ..... .. . .............. . . . ..... . . . .... . . .. . ..... . . . .. .. . ..... .... ..... . . . . . .. . . .. . .. ..... .. .... . .... .. .. ....... . ... . . . . . . . ............................ .... . ............................... . .... . .... ... . . . .. . ...... . ................... .. . . ... . . ... . . .. ... .................................... . . . . ....................................... . ......... .. .. . . . . .. . . . ... . . .. . . . ....... . . ....... .. ... . .. ......... . . . . . . ...... . .. . ... ... . . . . . . . .
lowQualScore : 4 0 6 0 9999 4 11 0 888 777 8888888 0 888 44 333 6 4 4 4444 9 11 4 0 55 55 99 0 55 0 0 0 0 0 9 0 33 11 6666 0 99 0 88888 999 0 0 222 4 9 88 4 9999 1 11 66666666666666666666 888 9 11 888888 11111111 9 4 4 4 8888888888888888888888888888888888888888888888888888888888888888888 1 888888 4 99 0 88888 22 0 00000000000000 0 6 0 88888 0 0 4 6666 8 0 99 0 77777 7 0 7 00 99 7 00000 0000 11111 7 7 7 0 6 99 0 0 88 0 99 55555 99 5555 0 1111 99 99 7777777 7 000 7 7 7 7 7 7 5 4444444444444444444444444444 5555 0 2222222222222222222222222222222 2 6666 0 7777 000 4 4 1 11 4 888888 8 2222222222222222222 33 0 0 444 0 0 555 0 9 11 333 000000000000000000000000000000000000 4 0 2 0 222222222222222222222222222222222222222 4 000000000 11 11 0 0 2 7 33 7 5 2 000 7 8 88 2 0 8 5555555 2 2 2222222 22 555 7 00 888888888 0 4 0 8 0 0 444444 0 88 8 222 888 8 8 0 8 0 0 5 0
consensus : NAAGGGTCT-ATGCAATGCAA-TTCGA-TTTTCC----GGCAGAGTAAA-CA--CCTANTCCAATTAAAAT-NAT--A-T-CCTGAAAATTT-GA---CGAAGNTAC-AGGCNGAATC-AACGGAGATATTA-GCGAAAAAC----TCGAAAC--CACAC-CTGAACGGAT-TTTTGA--AAAAGTC--GGTTCTAAGC-GCCA--A-ATCGC-TG-TGACGT-CAC-GTC-GTGTATATCGCCATCTTG-GA--TAGAGAGAAA----GCG-TGTA--GA-TCAGCTGATAATATTTCGCGA-TA-TTTATATCGTTCGT-TTGTG-TTT-T-GACGTATTTANA--TGCT-T--AAGGT--A-TTNN-A-TTTAGTCGTGATCGTTGAAAGTTTT--CAGTCG------TAGTA--------TTCGTGAT-CGGCATTG-TA-AATAC------------T------TA----T-AC-------------CG----------T---G-T---AATG------TAT-T--TCT-TTCG---GA-CGTG-TG-AG-----------AAAAG-TTACACACCATA-T--A--CNTAACATTC-CCCAT---AGCCATNG-AGAATTTTTCCAGCCTTGTG--AA-CATAC-AAT-ACAAGGCAGTGG-CTGAANCCTG-GT-TATAAT--TTGCTTTA--C--TACA---TATTTTAAT----CAT-TATAAT-TATT-TC-ATGTATTTACGTATTTT--TC-T-C-CGACTG-AAACC--ATACTGCC-----TCT--GAGA----G-AT----GAA--CGGATGAAAT--TTCTG-T-GTAG-AC---T-ATACTTT-TATTTTA-TT-TA-CT-GTAGGTACAG--------------ACA---TG----A-ATTCAGGGT----TGCA-AATAACCA----------C-T--------CG--------CATATGC---GAGTAATTTTATTTGTGGG-CGC-G-ACCAA-ATTGTGAAAATCCTCT-CGCCCAC--AT-GGCGAGT-----AAAACTT-------AC---C------TTTT-AAAA-ATC-CGC-T-C-G-T--NGTTTGA-CG-CTGC--ATT-A-CGTTT-T-----------T---------G-T-------AATACACATTTT-TATTTCCA-GAAAT-TTT--------A-----AA---GT-------G-----TGTGC-GTATTTACATT-----GTGTATGT--ACAGAAT--TTTG-AA-TCGTTTTCTC-TC--GTGAAGCTCGTGTTAAGAATTT-G-TTACGTGT-GAATATNTAACGAAGT-CGGGTTAGAAATTGCT-------ACCAATGC--AAAAAAAAAAAAAAAAAAAT--CA-G-TTTAGTGAAAG-GTTTATGAAAAT--GCCAC---C----AAAAATC-GTTTTACTGAAAGTTTTATGAATT-A-TGATTAGG-TTAATGAA-ATTTTGGAATAATAT-A-TTTCTTTTGCNAAAC-AAATAA-TTATATAATTGTCGCGATAGNTACC-GAACG
Reference ( family-926 ) : NAAGGGTCT-ATGCAATGCAA-TTCGA-TTTTCC----GGCAGAGTAAA-CA--CCTANTCCAATTAAAAT-NAT--A-T-CCTGAAAATTT-GA---CGAAGNTAC-AGGCNGAATC-AACGGAGATATTA-GCGAAAAAC----TCGAAAC--CACAC-CTGAACGGAT-TTTTGA--AAAAGTC--GGTTCTAAGC-GCCA--A-ATCGC-TG-TGACGT-CAC-GTC-GTGTATATCGCCATCTTG-GA--TAGAGAGAAA----GCG-TGTA--GA-TCAGCTGATAATATTTCGCGA-TA-TTTANATTGTTTGT-TTGTA-TTT-T-GACGTATTTANA--TGCT-T--AAGGT--A-TTNN-A-TTTAGTCGTGATCGTTGAAAGTTTT--CAGTCG------TAGTA--------TTCGTGAT-CGGCATTG-TA-AATAC------------T------TA----T-AC-------------CG----------T---G-T---AATG------TAT-T--TCT-TTCG---GA-CGTG-TG-AG-----------AAAAG-TTACACACCATA-T--A--CNTAACATTC-CCCAT---AGCCATNG-AGAATTTTTCCAGCCTTGTG--AA-CATAC-AAT-ACAAGGCAGTGG-CTGAANCCTG-GT-TATAAT--TTGCTTTA--C--TACA---TATTTTAAN----CAT-TATAAT-TATT-TC-ATGTATTTACGTATTTT--TC-T-C-CGACTG-AAACC--ATACTGCC-----TCT--GAGA----G-AT----GAA--CGGATGAAAT--TTCTG-T-GTAG-AC---T-ATACTTT-TATTTTA-TT-TA-CT-GTAGGTACAG--------------ACA---TG----A-ATTCAGGGT----TGCA-AATAACCA----------C-T--------CG--------CATATGC---GAGTAATTTTATTTGTGGG-CGC-G-ACCAA-ATTGTGAAAATCCTCT-CGCCCAC--AT-GGCGAGT-----AAAACTT-------AC---C------TTTT-AAAA-ATC-CGC-T-C-G-T--NGTTTGA-CG-CTGC--ATT-A-CGTTT-T-----------T---------G-T-------AATACACATTTT-TATTTCCA-GAAAT-TTT--------A-----AA---GT-------G-----TGTGC-GTATTTACATT-----GTGTATGT--ACAGAAT--TTTG-AA-TCGTTTTCTC-TC--GTGAAGCTCGTGTTAAGAATTT-G-TTACGTGT-GAATATNTAACGAAGT-CGGGTTAGAAATTGCT-------ACCAATGC--AAAAAAAAAAAAAAAAAAAT--CA-G-TTTAGTGAAAG-GTTTATGAAAAT--GCCAC---C----AAAAATC-GTTTTACTGAAAGTTTTATGAATT-A-TGATTAGG-TTAATGAA-ATTTTGGAATAATAT-A-TTTCTTTTGCNAAAC-AAATAA-TTATATAATTGTCGCGATAGNTACC-GAACG
gi|1 : GAAAATTT-GA---CGAAGTTAT-AAGCAGAATC-AAAGGAGATATTA-GCGAAAAAC----TCGGAAC--CACAC-CTGAACGGAT-TTTTGA--AAAAGTC--GGTTCTA-GC-GCCA--A-ATCGC-TG-TGACGT-CAC-GTC-GT-TATATCGCCATCTTG--A--T-GAGAGAAA----GCG-TGTA--GA-TCAGCTGATAAT--TTCGC-A-TA-TTTATATCATT-GTCTTTTG-TTT-T-G--GTGTCTACA--TGCTAT--ATGGT--A-TTTT-A-TTTAGTCGTGATCGTTGAA-GTTTT--CAGTCG------TAGTA--------TTCGTGAT-CGGCATTG-TA-AATACG-----------TAA----TA----T-ACTTTTGATTTGATTCGA---------T---G-TTGAAATG------TAC-T--TCT-TTGG---GA--------------------------G-TTACAC-CCAAA-T--A--CTTAACATTC-CTCAT---AGCCATTG-AGAATTTTTCCAGCCTTGTG--AA-CATAC-A-T-ACAAGACAGTGA-CCGAAGCCTG-GT-GATAAT--TTGCTTCA--C--TACA---TATTTTAAT----CAT-TAAAAT-TATT-TC-AT--ATTTACGTATTTT--TC-T-C-GGAGTG-AAACC--ATACTGCC-----TCT--GAGA----G-ATCGATGAA--CAGATGAAAT--TTCTG-TTGTAG-AT---T-ATATTTT-TATTTCA-TT-TC-AT-GTAAGTACAG--------------ACA---TGTATAATATTCAGAGT----TGCA-AATTACCA----------C-T--------CA--------CATATATAATGAGTAATTTTATTTGTGGG-CG----ACCAA-ATTGTGAAAATCTTCT-CGCCAAC--AT-GGCGAGT-----AAAACTT-------AG---T------TTTT-AAAA-ATC-CGC-T-C-G-T--TTTTTGA-CG-CTGC--ATA-A-CGTTTGTTTGTTGCCGAAT---------G-T-------AATTCACATTTT-TAT------G-------------------------------------------GTGC-GTA-TTA-ATT-----A-GTAT--------AAT--TTTG-AA-ATGTTTTCTC-TCGAGTGAAGCTCAACTT-AGTATTT---TAACATGTAGCATACGTA
gi|1 : TT-GCTTACGTGT-GACTATA-AACGAAGT-CGGGTTAGAAATTGCtagacctatagggaatgtcaatctccaggaaaattactgcaggaatgtaaaattgttgaaaatgtgatacataaaaatgtatatatataaccttttcatgtaacagccaattaaaattaatcagatcgaatatttatattgtataccatgaaagtgtcttgcttacgtgtgactataaacgaagtcgggttagaaattgcagtttagtgaaaggtttatgaaaatgccataaaaaaaaatcaatatactgaaagttttatgaattatgatttttgaaattctggaataatatttcttttgcaaacaaataattatataattgtcacgatagatactagaatgttgcaagtatatgcgcatgtattttaaccgtacacttgtcacttagtgttttgcaatatacaatttaaaaatttccatgcagggaggtagaggaacactttctgcctgctgcacgatttccataggtctcagcatatgtggttacttttaacttttgttttgcagtaagcataacgtgtattttatagtaccatctaaatagagcgaaatttcgcaatttttgggatctgttttggaagtcatatgcacacattgaaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnctttctgggcggggttttaagttgatttatacaggtttagaaagttcaaacacat
gi|1 : gaaaatttgacgaagttataagcagaatcaaaggagatattagcgaaaaactcggaaccacacctgaacggatttttgaaaaagtcggttctagcgccaaatcgctgtgacgtcacgtcgttatatcgccatcttgatgagagaaagcgtgtagatcagctgataatttcgcatatttatatcattgtcttttgttttggtgtctacatgctatatggtattttatttagtcgtgatcgttgaagttttcagtcgtagtattcgtgatcggcattgtaaatacgtaatatacttttgatttgattcgatgttgaaatgtacttctttgggagttacacccaaatacttaacattcctcatagccattgagaatttttccagccttgtgaacatacatacaagacagtgaccgaagcctggtgataatttgcttcactacatattttaatcattaaaattatttcatatttacgtatttttctcggagtgaaaccatactgcctctgagagatcgatgaacagatgaaatttctgttgtagattatatttttatttcatttcatgtaagtacagacatgtataatattcagagttgcaaattaccactcacatatataatgagtaattttatttgtgggcgaccaaattgtgaaaatcttctcgccaacatggcgagtaaaacttagtttttaaaaatccgctcgttttttgacgctgcataacgtttgtttgttgccgaatgtaattcacatttttatggtgcgtattaattagtataattttgaaatgttttctctcgagtgaagctcaacttagtattttaacatgtagcatacgtatagacctatagggaatgtcaatctccaggaaaattactgcaggaatgtaaaattgttgaaaatgtgatacataaaaatgtatatatataaccttttcatgtaacagccaattaaaattaatcagatcgaatatttatattgtataccatgaaagtgtcAGAAATTGCA-G-TTTAGTGAAAG-GTTTATGAAAAT--GCCATAAAA----AAAAATC-AATATACTGAAAGTTTTATGAATT-A-TGATT----TT--TGAA-ATTCTGGAATA--AT-A-TTTCTTTTGC-AAAC-AAATAA-TTATATAATTGTCACGATAGATACTAGAATGagtttagtgaaaggtttatgaaaatgccataaaaaaaaatcaatatactgaaagttttatgaattatgatttttgaaattctggaataatatttcttttgcaaacaaataattatataattgtcacgatagatactagaatgttgcaagtatatgcgcatgtattttaaccgtacacttgtcacttagtgttttgcaatatacaatttaaaaatttccatgcagggaggtagaggaacactttctgcctgctgcacgatttccataggtctcagcatatgtggttacttttaacttttgttttgcagtaagcataacgtgtattttatagtaccatctaaatagagcgaaatttcgcaatttttgggatctgttttggaagtcatatgcacacattgaaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnctttctgggcggggttttaagttgatttatacaggtttagaaagttcaaacacat
gi|10 : gaaaatttgacgaagttataagcagaatcaaaggagatattagcgaaaaactcggaaccacacctgaacggatttttgaaaaagtcggttctagcgccaaatcgctgtgacgtcacgtcgttatatcgccatcttgatgagagaaagcgtgtagatcagctgataatttcgcatatttatatcattgtcttttgttttggtgtctacatgctatatggtattttatttagtcgtgatcgttgaagttttcagtcgtagtattcgtgatcggcattgtaaatacgtaatatacttttgatttgattcgatgttgaaatgtacttctttgggagttacacccaaatacttaacattcctcatagccattgagaatttttccagccttgtgaacatacatacaagacagtgaccgaagcctggtgataatttgcttcactacatattttaatcattaaaattatttcatatttacgtatttttctcggagtgaaaccatactgcctctgagagatcgatgaacagatgaaatttctgttgtagattatatttttatttcatttcatgtaagtacagacatgtataatattcagagttgcaaattaccactcacatatataatgagtaattttatttgtgggcgaccaaattgtgaaaatcttctcgccaacatggcgagtaaaacttagtttttaaaaatccgctcgttttttgacgctgcataacgtttgtttgttgccgaatgtaattcacatttttatggtgcgtattaattagtataattttgaaatgttttctctcgagtgaagctcaacttagtattttaacatgtagcatacgtatagacctatagggaatgtcaatctccaggaaaattactgcaggaatgtaaaattgttgaaaatgtgatacataaaaatgtatatatataaccttttcatgtaacagccaattaaaattaatcagatcgaatatttatattgtataccatgaaagtgtcttgcttacgtgtgactataaacgaagtcgggttAAGGGTCT-ATGCAATGCAA-TTCGA-TTTTCC----AGCAGAGTAAA-CA--CCTAATCCAATTAAAA---AT--A-T-ACTGAAAATTT-GA---CGAAGTTAT-AAGCAGAATC-AACGGAGATATTA-GCGAAAAAC----TCGAAAC--CACAC-CTGAACGGAT-TTTTGA--AAAAGTC--GGTTCT-AGC-GCCA--A-ATCGC-TG-TGACGT-CAC-GTC-GTGTATATCGCCATCTTG-GA--TAGAGAGAAA----GCG-TGTA--GA-TCAGCTGATAAT-TTTCGCGA-TA-TTTATATCATTTGTCTTTTG-ATT-T-GGTGCATTTACA--TGCT-A--TAGGT--ATTTTT-A-TTTAGTCGTGATCGTTGAAAGTTTT--CAGTCGTAGCTATAGTA--------TTCGTGAT-CGGCATTG-TA-AATA-------------T------CA----T-A--------------CG--------------G-T---AATA------TATAT--TGG-TTTGATCGA-TGT--TG-AATGTACTTCTTTGGGAG-TTACAC-CCATA-T--A--CTTAACATTC-CCCAT---AACCAT-G-AGAATTTTCCCAGCCTTGTG--AA-CATAC-ttgcaagtatatgcgcatgtattttaaccgtacacttgtcacttagtgttttgcaatatacaatttaaaaatttccatgcagggaggtagaggaacactttctgcctgctgcacgatttccataggtctcagcatatgtggttacttttaacttttgttttgcagtaagcataacgtgtattttatagtaccatctaaatagagcgaaatttcgcaatttttgggatctgttttggaagtcatatgcacacattgaaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnctttctgggcggggttttaagttgatttatacaggtttagaaagttcaaacacat
gi|11 : TGAACGGAT-TTTTGA--AAAAGTC--GGTTCTA-GT-GCCA--A-ATCGC-TG-TGACGT-CAC-GTT-GTGTATATCGCCATCTTG-AA--TAGAGAGAAA----GCG-TGTA--AA-TCAGCTGATAAT-TTTCGCGA-TA-TTTATATT--------TATG-TTT-T-GGTGCATTTACA--TGCT-A--TAGGT--A-TTTTTA-TTTAGTCGTGATCGTTGAAAGTTTT--CAGTCG------TAGTA--------TTCGTGAT-CGGCATTT-TA-AATAC------------CGTAATATA----T-AT-------------TGATTTGATCGAT---G-TTG-AATG------TAC-T--TCT-TTGG---GA-TGCG-TGGAA-----------AAAAG-TTACAC-CCATA-T--A--CTTAACATTC-CCCAT---AGCCATTG-AGAATTTTTCCAGCCTTGTG--AA-CATAC--AT-ACATGGCAGTGG-CTGAAACCTG-GT-GATAAT--GTGCTTTA--C--TACA---TATTTTAAT----CAT-TATAAT-TATT-TC-A--TATTTACGTATTTT--TC-T-C-GGACTG-AAACC--ATACTGCA-----TCT--GAGA----G-A
gi|12 : AAGGGTCT-ATGCAATGCAA-TTCGA-TTTTCC----AGCAGAGTAAA-CA--CCTAATCCAATTAAAAC-TAT--A----CTGAAAATTT-GA---CGAAGTTAT-AAGCAGAATC-AACGGAGATATTA-GCGAAAAAC----TCGAAAC--CACAC-CTGAACGGAT-TTTTGA--AAAAGTC--GGTTCTA-GC-GCCA--A-ATCGC-TG-TGACGT-CAC-GTC-GTGTATATTGCCATCTTG-GA--TAGAAAGAAA----GCG-TGTA--GA-TCAGCTGATAAT-TTTCGCGA-TA-TTTATA----TCAT-TTGT------------------------CT-T-----------TTGT---TTTGGTCGTGATCGTTGAAATTTTC--CAGTCG------TAGTA--------TTCGTGAT-CTGCATTG-TATAA-----------------------A----A-AC-------------CG----------TACGG-T---AATA------TAT-
gi|13 : aGCGAAT-----AAA-CTT-------AC---CGT----TTTT-AAAA-ATCGCGC-C-C-G-T--CTGTTGA-CGGCTCC--ATT-A-CGTT----------------------------------AATA-ACATTCT-T-TTTCCA-GAAAT-TTTTAATGCG-A-----AA---AA-------G-----TGTGC-GTATTTACAT-------TGTATGT--ACAGAAGAATTTG-AAGTCGTTTCTTCTTC--GTAAAGCTCGTGTT-AGAA-TT-G-TTACGTGG-GAAattgatttgat
gi|13 : AGTTCGGGTTAGAAATTGCTTAGCCATGCCAATAA--AAAAAAAAAAAAAAAAAATC--CA-T-GTTAGTGGAAattagtcagtaacttcgagaaagtttggtgtgtgtatggagcagttcgggttagaaattgcttagccatgccaataaaaaaaaaaaaaaaaaaaatccatgttagtggaatccttgaatccacgttagagtggtttttaatggtatttttct
gi|14 : gcgaataaacttaccgtttttaaaaatcgcgcccgtctgttgacggctccattacgttaataacattctttttccagaaatttttaatgcgaaaaagtgtgcgtatttacattgtatgtacagaagaatttgaagtcgtttcttcttcgtaaagctcgtgttagaattgttacgtgggaaattagtcagtaacttcgagaaagtttggtgtgtgtatggagcAAGGGTCT-ATGCA-TGCAA-TTCGA-TTTTTA----AGCATAGTAAA-CA--CCTATTCCAATAAAAAC-TAT--A----CTGAAAATTT-GA---CGAAG------------ATC-AACGGAGATATTA-GCGAAAAAC----TCGAAAC--TACAC-CTGAACAGAT-ATTTGA--AAAAGTC--GGTTCT-AGC-GCCA--A-ATCGC-TG-TGACGT-CAC-GTC-GTGTATATCGCCATCTTG-GA--TAGAGAGAAA----GCG-TGTA--GA-TCAGTTGAT-ATATTTTGCGA-TA-TTTATA----TCAT-TTGTA-TTT-T-Gtccttgaatccacgttagagtggtttttaatggtatttttct
gi|15 : aTCT-ATGCAATGCAAATTCGA-TTTTCCA---GGCAGAGTAAA-CA--CCTAATCCAATTTAAA--CAT--A-TATCTGAAAATTTGGA---CG-ACATAT-AAGCAGAATC-AATGGAGATATTA-GCGAAAAACGCGACCGAAAC--CACAT-CTGAACGGA--TTTTGA--AAAAGTC--GGTTTCTAGC-GCCA--A-ATCGCTTGTTGACGT-CAC-GTCTGTGTATATCGCCATCTTGAGA--TAGAGA
gi|16 : TTAAAA--AATCGA-T-CCTGAAAATTT-TATTGCGATCGTAC-A---TGTACT-ATTGGAGATATTT-GGGGTAA------TCACAATTTCACAC-CTGAAC-GAC-TTTTAA--ACCGGGC--TGTTTT-GGT-GCGATTA-AT-GT-CG-TGACGT-CAC-GAG-GTCAACATCGCC
gi|17 : taaaagatatctgcaaccccggtcatttgttttaaatttggagggttacagt-ATGCAGGGTATGTTGCA-AATAACCAGTTGCCCACTC-T--------TG--------CAAATGA---GAATA----TATTT-TGTG-TGC-A-ACCAA-AATATGAAAATCCTAT-TGCCAAC--AT-GGTGTGT-----AAAATTT-------AC---CGTAACTTTTC-CAAA-ATC-CAC-T-T-G-C--AGTTTAA-CA-TTAC--ATT---TGTTT-
gi|18 : AGGGT----TGCA-AATAACCA----------C-T--------CG--------CAAATGC---GAGTAATTTTATTTGTGG---GC-G-ACCAG-TTTATGAAAGTTCTCT-CGCCCAC--AA-GGCGAGT-----AAAAATTTATCGTAAC---T------TTTC-TGGA-ATT-CGT-T-C-A-C--AGTTTGA-agaaggtttcaacttctga
gi|2 : AAAGGTCT-GTGCAATGCAA-TGCTA-TTTTTT----GATAAAATAAAATA--TCTACTCAAA--AAAAT-GAT--G-T-CCTGAAAATTT-GA---CGAAGATAC-TGACTGAATT-AACAGAGATATTACGCGAAAAAC----TC-CAAT--CACAC-CTGAACGTAT-TTTTGA--AAAAGCC--GGGTTTAAGC-GCCA--A-ATCGC-TG-TGACGT-CAC-CGC-ATGTTTTGAGCCATATCG-AAAGTAGAAAAACA----GTA-CGAAT-GA-GCAGTTGA----ATTTCGCT--TAGTTTGAATTGTTTGT-TTGTA-TTT-TCAACGTATTTAAA--TGTT-T--AAGAT--A-TTAA-A-TTT----GTGATCGTTGAAAGTTTT--CAGTCG------TAGTA--------TT-GTGAT-CGGCACTG-TA-AAT--------------T------TA----T-AC-------------CG----------T---G-T---ATTG------TAT-T--TCT-TTC----GA-CGTG-TG-AG-----------AAAAG-TTGCAC-TTATA-T--C--CATAACATTC-ACTAG---AGCCATGG-AGAA-TTTTCCAGCATTGTG--AA-CATAC-AAT-ATAAGGCAGTGA-CTGAACCCTG-GT-TATAAT--TTGATTTA--C--TAC----------------------ATAAT-TATT-TC-ATGCATTTACGTATTTT--TC-T-C-CGACTG-AAA-C--ATATTGCC-----TCT--GAGA----G-AT----GAA--CGGATGAAAT--TTCT-------G-AC---T-ATACTTT-TATTTTA-TT-TA-CT-GTAGGTACAG--------------AC----TG----A-ATTCAGGGT----TGCA-AATAACCA----------C-T--------CG--------CATATGC---GAGTAA-TTTATTTGTGGG-CGCGG-ACCAA-ATTGTGAAAATCCTCT-CCGCCAC--AT-GGCGAAT------AAACTT-------AC---C------TTTT-AAAA-ATC-CGC-C-C-G-T--CGTTTGA-CG-CTGC--ATC-A-CA--------------------------G-T-------AATACACATTTT-TATTTCCA-GAAAT------------------AA---GT-------G-----TGTGC-GTATTTACATTGTACAGTGTATGT--AC-GAAT--TTTG-AA-TCGTTTTCTC-TC--GT-AAGCTCGTGTTAAGAATTT-G-TTACGTGT-GAATATTTAACGAAGT-CGGGTTAGAAATTGCT-------ACCAATGC-------AAAAAAAAAAAAAAT--CA-G-TTTAGTGAAAG-ATTTATGAAAAT--GCCAC---C----AAAAATC-GTTTTACTGAGAGTTTTATG-ACT-ATTGATTAGGCCTAATGAA-ATTTTGG-ATAATAT-ATTTTCTTTTGCAAAAC-AAATAA-CTATATAATTGTCGCGATAGCTACC-GAACGatcaacttttacttgcactttcg
gi|21 : tAGGATATCATGCAATGAAA-TGCGATTTTTTT----GGTAGAATAAA-CA--TCTAT--CAA--GAAATAAAC--ACT-TCCGAAAAATT-Ga
gi|22 : TTCAGGGT----TGCA-AATAACCA----------C-T--------CGTCCACTTGCATATGC---GAGTAATTTTATTTGT
gi|23 : ct--------A-----AA---GT-------G------GTGC-GTATTTACATT-----GT--ATGT--ACAGAAT--TTTG-AA-TCG
gi|24 : gcgaaTGCAA-TTCGA-TTTTCC----AGCAGAGTAAA-CA--CCTAATCCAAT
gi|25 : AAGGGTCT-ATGCAATGCAA-TTCGA-TT
gi|3 : taAAGGGTCT-ATGCAATGAAA-TGCGA-TTTTTTTTTTGGTAGAATAAA-CA--TCTACTCAAAT--AAAT-AAT--G-T-CCTGAAAATTTTGA---CGAAGATAC-TGGCTGAATT-AACAGAGATATTA-GCGAAAAAC----TCCAA-T--TATACACTGAAAGTAT-TTTTGA--AATAGTC--GGAT-TAAGCCGC----A-ATCGC-TG-TGACGT-CAC-A-----------CAC---------A--TAAACAGCAA----G---TACA--GA-TCAACAGTTGG-ATGTCGCTT-TG-TTTGAATTGTTTGT-TTGTAGTTT-T-AACGTACT---A--T----T--AA----------A-A-TTTAGT---GATCGTTGAA-GTTTT--CAGTCG------TAGAA--------TTGGTGAT-CG-CATTG-TA-AATACGCGTGATATATAT------TAGATTTGAT-------------CGAA--------T---G-TTG-AATG------TAC-T--TCT-TTGG---GA-CGCG-TG--G-----------AAAAGATTACAC-CCATA-T--A--CTTAACATTC-CC-AT---AGCTGT-G-ATAGTTTTTCCAGTCTTGTG--AA-CATAC-A-T-ACAAGGCAGTGGGCTGAAGCCTG-GT-GATAAT--TTGCTTTA--C--TGCAATATATTTTAAT----CAT-TATGAT-TATT-TC-AT--ATTTA-GTATTTT--TC-T-C-GGACTG-AAACC--ATACTGCC-----TCT--GAGAGATCG-AT----GAA--CAGATGAAAT--TTCTGTT-GTAGAAA---T-ATACTTT-TATTTTA-TT-TA-CT-GTAGGT--AG--------------ACA---TA----ATATTCAGGGT----TGCA-AATAA-CA----------CAT--------CT--------AAT-------GAGT-ATTTTATTTGTGA---GT-G-ACCAA-ATTGTGAAAAT-CTCT-CGCTCACATAT-GGCGAGT------AAACTT-------AC---T------TTTT-AAAAGATC-CGCATGC-GTT--CTTTTGA-CG-CTGC--A-T-A-CGTTTGTTGCCGAG----T---------G-T-------AAT-CATATTTT-TATTTCGA-GAAAT-TTT--------AATGTGAA---GT-------G------GTGC-GTATCAACAT-------TGTATGT--ACAGAAT--TTTG-AA-T--TTTTCTC-GA--GTGAAGCTC
gi|4 : taGGGT----TGCA-AATAACCA----------C-T--------CG--------C-----C------TAATTT-ATTTTTT-----C----CCAA-ATT-TGAAAATCCTCT-AGTCCAC--ATTGGCGAGTTGCCTAAAACTT---------------------TT-CAAA-ATC-GGG-T-C-G-T--GGTTTCA-CGGCTGCCAATT-AACGTTT-T-----------TTTGCCGAATG-T-------AATACACATTTC-C--CCCCAAGAAAT-TTC--------A-----CAT--GT-------GAAAAATGTGCCGTATTATCATT-----GT--ATGT--GCAGAAT--TTTT-AA-CTGTTTTTCC-TCAAGTGGAa
gi|4 : cACGTGC-GAA-ATATACCGAAGT-CGGGTTAGAAAATTCT-------ACC--CCC---------------CAAAAAT--CA-GTTTTAGTGAAAG-GTTTATGAAataatcagagacgtacataatattatagtacacacataattatacatgtatagcgaaagtcgatctcttagaaaattactgcaggaacgtaaaattgttgcaaatgtgtacttaaagatagatctataaatcaaaacttattttgtaatagtaaattaaattaatcagattgaatctttatattgtatgcatatgccgtttaattgtcttgcgccacgtgcgaaatataccgaagtcgggttagaaaattctaccccccaaaaatcagttttagtgaaaggtttatgaattatgattaatgaaattttggaattaatctttcttttgccaaagaaataatttatttaattgttgcgatatactagtatacgagaaggtggccgatcacatgcgcatctgtactagctcatgatctttccagctgattccatatcggaggtagaggaaaacttttctgcctgctgcacgattttcacgggtctcagcatatgcggggttacttttaacctttgttgcagtaagtgtaccgtnnnnnnnnnnnnnnnnnnnnnnnnnatcaaaatgt
gi|4 : cgggttgcaaataaccactcgcctaatttattttttcccaaatttgaaaatcctctagtccacattggcgagttgcctaaaacttttcaaaatcgggtcgtggtttcacggctgccaattaacgtttttttgccgaatgtaatacacatttccccccaagaaatttcacatgtgaaaaatgtgccgtattatcattgtatgtgcagaatttttaactgtttttcctcaagtggaataatcagagacgtacataatattatagtacacacataattatacatgtatagcgaaagtcgatctcttagaaaattactgcaggaacgtaaaattgttgcaaatgtgtacttaaagatagatctataaatcaaaacttattttgtaatagtaaattaaattaatcagattgaatctttatattgtatgcatatgccgtttaattgtcttgcgccG-GGTTA-GAAAAT--TCTAC---CCCCCAAAAATCAGTTTTAGTGAAAGGTTTATGAATT-A-TGA------TTAATGAA-ATTTTGGAATTA-AT-C-TTTCTTTTGCCAAAG-AAATAATTTATTTAATTGTTGCGATAttatgattaatgaaattttggaattaatctttcttttgccaaagaaataatttatttaattgttgcgatatactagtatacgagaaggtggccgatcacatgcgcatctgtactagctcatgatctttccagctgattccatatcggaggtagaggaaaacttttctgcctgctgcacgattttcacgggtctcagcatatgcggggttacttttaacctttgttgcagtaagtgtaccgtnnnnnnnnnnnnnnnnnnnnnnnnnatcaaaatgt
gi|5 : cgggttgcaaataaccactcgcctaatttattttttcccaaatttgaaaatcctctagtccacattggcgagttgcctaaaacttttcaaaatcgggtcgtggtttcacggctgccaattaacgtttttttgccgaatgtaatacacatttccccccaagaaatttcacatgtgaaaaatgtgccgtattatcattgtatgtgcagaatttttaactgtttttcctcaagtggaataatcagagacgtacataatattatagtacacacataattatacatgtatagcgaaagtcgatctcttagaaaattactgcaggaacgtaaaattgttgcaaatgtgtacttaaagatagatctataaatcaaaacttattttgtaatagtaaattaaattaatcagattgaatctttatattgtatgcatatgccgtttaattgtcttgcgccacgtgcgaaatataccgaagtcC-ATGTATTGTCACATTTTATTC-TTN-NNNNNN-NNNNN--NNNNNNNN-----NNN--NNGA----A-TT----GAA--CGGATGAAAT--TTCTG--------AC---T-AT-CTTTATATTTTA-TT-TATCT-GTAGGTA-AG--------------AC----TG----A-ATT-AGGGT----TGCACAATAAC-A----------C-T--------CGG-------CAAATG----GAGTAATTTATTTTGTGGG-GGC-G-GACAATAATGTGAAAATCCTCTTCGCC-AC--AT-GG-GAAT-----AAA-TTT-------AC---C------TTTT-AAAA-ATC-CGC---C-G-T--CGTTTGA--G--TCC--ATT-A-AA--------------------------G-T-------CA-ATACATGTT-TATTT-CA-GAATT-TTTTATGCGA-A-----AA---GT-------G------GTGC-GTATTTAC-TT-----G-GCATGT--ACAAGAT--TTTGAAA-TCGTTTTCTC-TC--GTAAAGCTCGTGTTAAGAATTTAG-TTACGTGT-GAATATTTAACG-AGT-CGGGTAAG-AATTG-T-------ACCAATGCAAAAAAAAAAAAAAAAAAAAAT--CAGG-TTTAGTGACAGAATTTATGAAAATTGGCCAC---C-----AAAATC-GTTTTA-TGAGAGTTTTATGAGTTAA-TGATTAGG-CCTATGAAGATTTT-GAAT-ATATAA-TTTCTTTTGCAAAACAAAATAA-ATATATAATTGTCGCGATAGCTACC-GAAtactagtatacgagaaggtggccgatcacatgcgcatctgtactagctcatgatctttccagctgattccatatcggaggtagaggaaaacttttctgcctgctgcacgattttcacgggtctcagcatatgcggggttacttttaacctttgttgcagtaagtgtaccgtnnnnnnnnnnnnnnnnnnnnnnnnnatcaaaatgt
gi|6 : gacaattcgctgcaataataaaAAAGGTCT-GTGCAATGCAA-TGCTA-TTTTTT----GATAGAATAAA-CAATCATAACTCAAAGTAATT-GAT--G-T-C-TGAAAATTT-GA---CGAA-ATACTAGGCTGAATTTAACAGAGATATTA-GC-AAAATC----TCCAAAT--CACAC-CTGAAACGTTATTTTGACTAATAGTCCTGGTTC--AGTTGCCA--ATATCGC-TG-TGACGTTCACCGTC-ATGTTTGAGGCCATTATC-GA--AAGAGAAAAAACAAGCGACGTAATGAGTCAGTTGA----ATTTTGCGACTA-GATAG-TTGTTTGT-T-GTT-TTT-TCAACGTATTTATAGATGTT-T--AAGAT--A-CTAA-AATTTAGT---GATCGTAGACAGTTTTTTCAGTCG------TAGTACATGTATTTTGGTGAT-CGCAATTG-TA-AAT---------------------TA----T-AC-------------CG----------T---G-T---A---------TAT-TGTTCTATTCG---GA-CGTGATG-AA-----------AAAAG-T-GCACATTATA-T--C--CATAACATTT-CACACTGAGGCCATTG-GAATTTTTTCCAGCATTGTG--AAACATAA-AATTATAAGG-AATGG-CTGAACACTGTGT-TATTAC--TTGATTTAACT--TAC----TATGTTGATAACACATATATAAT-TATT-TCTCTGTATTTACGTATTTT--TCCT-C-CGACTGTAAGCC--ATACTGCC-----TCT--GAGA----G-AT----GAACGCGAATGAAAT--TTCT-------G-AC---T-ATATTTT-TATTTTATTT-TA-CT-GTAGgaaaggttgcagtacctatttttacccggatttcaaccgtgccttgtcatttgtaggcctgaggttttcgaccacggtctacatag
gi|7 : TTAAA--GGCC-TCTAAGATTAA-TTAA-AATTTAGT---GATCGTTGAAAGTTTT--CAGTCG------TAGTA--------TTTGTGATCCGGCATTGCTA-AA-AT------------T------TA----T-AC-------------CG----------T---GAT---ATTG------TAT-T--GAT-TT-----GATCGTGCTG-AG-----------AAAAG-TTGCACATTATA-TTCC--CATAACATTCACCCAG---AGCCATGATAGAATTTTTCCA-CCATGTGAAAA-CATACAAAT-ATAGGGCAGTGG-CT-AACCCTG-TTATATACTCCTTGATTCA--CCATACA---TATTTTAAA----CAT-TATAATCTATTCTC-ATGTATTTACGTATTTT--TC-TACGCGACTG-AAACC--ATACTGCCACAAATCT--GAGA----GAAT----GAA--CGAATGAAATTGTTCT--T----G-AC---TAATACTTT-TATTTTA-TTCTA-CTAGTAGGTACAGCCTCCGGAGTAGGTACAGACTGA---A-ATTCAGGGT----TGCA-AATAACCA----------CTT--------CG--------CATATGC---GAGTAATTTTATTT-TGGGCCGC-GAACCAA-ATTGTGAAAATCCTCT-CGCCCAC--AT-GGCGAAT-----AAAACTT-------ACCCTC------TTTTAAAAA-ATC-CGC-C-CGG-TTGGGTTTGATCG-CTGC--ATTCA-CA--------------------------GCT-------AATACACATTTTCTATTTCCA-GAAATCTTT--------A-----AATCTGCAAAACAAG-----TGTGC-GTATTTACA-------ATGTATGCTAACAGAAT--Tt
gi|8 : ATTGTTTGT-TTGTA-TTTCT-AACATATTTAAA--TGTT-TT-AAGAT--A-TTAA-AATTTAGT---GATCGTTGAAAGTTTT--CAGTTG------TAGTA--------TTCGTGAT-CGGCATTG-TA-AAT--------------T------TA----T-AT-------------CG----------T---GAT---ATTGGTTTGATAT-T--TCT-TTCG---GA-CGTG-TG-AG-----------AAAAG-TTACACATTATAAT--ATCCATAACATTC----------ACCATGG-AGAATGTTTCCAGCATTGTG--AA-CATAC-AA--ATAAGGCAGTGG-CTGAAGCCTG-GT-TATAAT--TTGCTTTA--C--TACA---TATTTTAAA----CAT-TATAAT-TATT-TC-ATGTATTTACGTATTTT--TC-T-C-CGACTG-AAACCATATACTGCC-----TCTGCGAGATC--G-AT----GAA--GGGATGGAAT--TTCTGAT-GTAG-ACTATT-ATACTTT-TATTTTA-TA-TT-CT-GTAGGTACAG--------------AC----TT----A-ATTCAGGGT----TGCA-AATAACCA----------C-TCGGCCACACG--------CATATGC---GAATAATTTTATTTTTGG---GC-G-ACCAA-ATTGTGAAAATCCTCT-CATCCAC--AT-GGCGTGT-----AAAACTT-------AC---C------TTTT--AAA-ACC-CGC-T-C-G-T--GGTTTGA-CG-CTGC--ATT-A-CGCTTGT-----------T---------G-CCAAATGAAATACACAATTT-TATTTCCA-GAAAT-TTTTAATGTGAA-----AA---GT-------G------GTGC-GTATTTACAT-------TGTATGT--ACAGTAT--TTTG-AA-CCGTTg
gi|9 : AAAAAAGAAAT--CT-G-TTTAGTGAAAG-GTT-AT--AAAT--GCCAC---C----AATAATC-GATTTACTGAAAATTTCATGAATT-A-TTAAT-GA-TTAATGAA---TTTGGAATAA-AT-A-TTTC-TTTGCTAAAC-AGAT-A-TTTTATAATTGTCGCGATAGATA-C-GAA
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|19 ): TAGCCGAACGAACAGGATGTCATGGCCGAGTACCTATTTAAACCCGTAGATAAAAACCGTGGGTTGCACTTGTCATTGTAGGCCGAGGTTTTCGACCCGACGGTCTAACCTCAGGTGA
Unaligned ( gi|20 ): ATAGAAGTGTATTCTCAGATTCATTTGAACTCATGAATTTGAAGTGATCATCAGAACAATTTTGATTAGTTTATTTATAA
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111 111111111111111111111111111111111111
lowQualScore : 1111 111 111 1111111 11 1111 11 22222 11111111 111111 22222222222222222222 111 111111 11111111 0000000000000000000000000000000000000000000000000000000000000000000 111111 11 11111 1 22222222222222 2 11111 1111 1 11 11 1111 11111 1 11111 1111 1111 5555555 111 5555555555555555555555555555 2222222222222222222222222222222 1111 111111 2222222222222222222 000000000000000000000000000000000000 888888888888888888888888888888888888888 222222222 11 1 111 3333333 11111 11 222222222 222222 222 111 1
lowQualScore : 4 4 0 4 3333 4 66 1 111 777 4444444 8 777 66 999 2 4 4 9999 2 66 4 4 55 55 77 8 55 4 4 4 4 4 0 4 66 66 0000 5 11 5 55555 22 5 0 99999999 99 4 666666 4 66 11111111111111111111 777 1 66 222222 66666666 2 4 4 4 0000000000000000000000000000000000000000000000000000000000000000000 5 222222 00 5 55555 55 0 88888888888888 5 1 5 33333 1 5 1 0000 0 5 11 5 77 5 1 5 77 77 0 88888 5555 44444 5 5 5 5 5 66 5 0 55 5 66 22222 66 7777 5 2222 77 77 0000000 5 000 5 5 5 5 5 5 2 8888888888888888888888888888 8888 4 5555555555555555555555555555555 1 8888 5 9999 999 4 4 1 66 4 000000 0 5555555555555555555 77 4 4 888 4 4 666 4 8 66 555 222222222222222222222222222222222222 0 5 3 5 222222222222222222222222222222222222222 4 666666666 66 66 5 5 0 6 88 3 5 3 666 6 0 11 3 8 0 2222222 99999 3 99 6 6 6 11 666666666 8 1 5 0 8 8 888888 6 88 0 222 111 0 8 8 0 8 1 2 0
lowQualScore : . . . . .... . .. . ... ... ....... . ... .. ... . . . .... . .. . . .. .. .. . .. . . . . . . . .. .. .... . .. . ..... .. . . ........ .. . ...... . .. .................... ... . .. ...... ........ . . . . ................................................................... . ...... .. . ..... .. . .............. . . . ..... . . . .... . . .. . .. . . . .. .. . ..... .... ..... . . . . . .. . . .. . .. ..... .. .... . .... .. .. ....... . ... . . . . . . . ............................ .... . ............................... . .... . .... ... . . . .. . ...... . ................... .. . . ... . . ... . . .. ... .................................... . . . . ....................................... . ......... .. .. . . . . .. . . . ... . . .. . . . ....... ..... . .. . . . .. ......... . . . . . . ...... . .. . ... ... . . . . . . . .
lowQualScore : 4 0 6 0 9999 4 11 0 888 777 8888888 0 888 44 333 6 4 4 4444 9 11 4 0 55 55 99 0 55 0 0 0 0 0 9 0 33 11 6666 0 99 0 88888 99 0 5 11111111 88 4 222222 1 11 66666666666666666666 888 9 11 888888 11111111 9 4 4 4 8888888888888888888888888888888888888888888888888888888888888888888 1 888888 66 0 88888 22 0 00000000000000 0 6 0 88888 0 0 4 6666 8 0 99 0 77 7 0 7 00 99 7 00000 0000 00000 7 7 7 0 6 99 0 0 88 0 99 55555 99 5555 0 1111 99 99 7777777 7 000 7 7 7 7 7 7 5 4444444444444444444444444444 5555 0 2222222222222222222222222222222 2 6666 0 7777 000 4 4 1 11 4 888888 8 2222222222222222222 33 0 0 444 0 0 555 0 9 11 333 000000000000000000000000000000000000 4 0 2 0 222222222222222222222222222222222222222 4 000000000 11 11 0 0 2 7 33 7 5 2 000 7 8 88 2 0 8 5555555 88888 2 22 7 7 7 00 888888888 0 4 0 8 0 0 444444 0 88 8 222 888 8 8 0 8 0 0 5 0
consensus : NAAGGGTCT-ATGCAATGCAA-TTCGA-TTTTCC----GGCAGAGTAAA-CA--CCTANTCCAATTAAAAT-NAT--A-T-CCTGAAAATTT-GA---CGAAGNTAC-AGGCNGAATC-AACGGAGATATTA-GCGAAAAAC----TCGAAAC--CACAC-CTGAACGGAT-TTTTGA--AAAAGTC--GGTTCTAAGC-GCCA--A-ATCGC-TG-TGACGT-CAC-GTC-GTGTATATCGCCATCTTG-GA--TAGAGAGAAA----GCG-TGTA--GA-TCAGCTGATAATATTTCGCGATA-TTTATATCGTTTGT-TTGT-GTTT-T---GACGTATTTANA--TGCT-T--AAGGT--A-TTNN-A-TTTAGTCGTGATCGTTGAAAGTTTT--CAGTCG------TAGTA--------TTCGTGAT-CGGCATTG-TA-AATAC------------T------TA----T-AC-------------CG----------T---G-T---AATG------TAT--TTCT-TTCG---GA-CGTG-TG-AG-----------AAAAG-TTACACACCATA-T--A--CNTAACATTC-CCCAT---AGCCATNG-AGAATTTTTCCAGCCTTGTG--AACATAC-AA-TACAAGGCAGTGG-CTGAANCCTG-GT-TATAAT--TTGCTTTA--C--TACA---TATTTTAAT----CAT-TATAAT-TATT-TC-ATGTATTTACGTATTTT--T-CT-C-CGACTG-AAACC--ATACTGCC-----TCT--GAGA----G-AT----GAA--CGGATGAAAT--TTCTG-T-GTAG-AC---T-ATACTTT-TATTTTA-TT-TA-CT-GTAGGTACAG--------------ACA---TG----A-ATTCAGGGT----TGCA-AATAACCA----------C-T--------CG--------CATATGC---GAGTAATTTTATTTGTGGG-CGC-G-ACCAA-ATTGTGAAAATCCTCT-CGCCCAC--AT-GGCGAGT-----AAAACTT-------AC---C------TTTT-AAAA-ATC-CGC-T-C-G-T--NGTTTGA-CG-CTGC--ATT-A-CGTTT-T-----------T---------G-T-------AATACACATTTT-TATTTCCA-GAAAT-TTT--------A-----AA---GT-------G-----TGTGC-GTATTTACATT-----GTGTATGT--ACAGAAT--TTTG-AA-TCGTTTTCTC-TC--GTGAAGCTCGTGTTAAGAATTT-G-TTACGTGT-GAATATNTAACGAAGT-CGGGTTAGAAATTGCT-------ACCAATGC--AAAAAAAAAAAAAAAAAAAT--CA-GTTT-AGTGAAAG-GTTTATGAAAAT--GCCAC---C----AAAAATC-GTTTTACTGAAAGTTTTATGAATT-A-TGATTAGG-TTAATGAA-ATTTTGGAATAATAT-A-TTTCTTTTGCNAAAC-AAATAA-TTATATAATTGTCGCGATAGNTACC-GAACG
Reference ( family-926 ) : NAAGGGTCT-ATGCAATGCAA-TTCGA-TTTTCC----GGCAGAGTAAA-CA--CCTANTCCAATTAAAAT-NAT--A-T-CCTGAAAATTT-GA---CGAAGNTAC-AGGCNGAATC-AACGGAGATATTA-GCGAAAAAC----TCGAAAC--CACAC-CTGAACGGAT-TTTTGA--AAAAGTC--GGTTCTAAGC-GCCA--A-ATCGC-TG-TGACGT-CAC-GTC-GTGTATATCGCCATCTTG-GA--TAGAGAGAAA----GCG-TGTA--GA-TCAGCTGATAATATTTCGCGATA-TTTATATCGTTCGT-TTGT-GTTT-T---GACGTATTTANA--TGCT-T--AAGGT--A-TTNN-A-TTTAGTCGTGATCGTTGAAAGTTTT--CAGTCG------TAGTA--------TTCGTGAT-CGGCATTG-TA-AATAC------------T------TA----T-AC-------------CG----------T---G-T---AATG------TAT--TTCT-TTCG---GA-CGTG-TG-AG-----------AAAAG-TTACACACCATA-T--A--CNTAACATTC-CCCAT---AGCCATNG-AGAATTTTTCCAGCCTTGTG--AACATAC-AA-TACAAGGCAGTGG-CTGAANCCTG-GT-TATAAT--TTGCTTTA--C--TACA---TATTTTAAT----CAT-TATAAT-TATT-TC-ATGTATTTACGTATTTT--T-CT-C-CGACTG-AAACC--ATACTGCC-----TCT--GAGA----G-AT----GAA--CGGATGAAAT--TTCTG-T-GTAG-AC---T-ATACTTT-TATTTTA-TT-TA-CT-GTAGGTACAG--------------ACA---TG----A-ATTCAGGGT----TGCA-AATAACCA----------C-T--------CG--------CATATGC---GAGTAATTTTATTTGTGGG-CGC-G-ACCAA-ATTGTGAAAATCCTCT-CGCCCAC--AT-GGCGAGT-----AAAACTT-------AC---C------TTTT-AAAA-ATC-CGC-T-C-G-T--NGTTTGA-CG-CTGC--ATT-A-CGTTT-T-----------T---------G-T-------AATACACATTTT-TATTTCCA-GAAAT-TTT--------A-----AA---GT-------G-----TGTGC-GTATTTACATT-----GTGTATGT--ACAGAAT--TTTG-AA-TCGTTTTCTC-TC--GTGAAGCTCGTGTTAAGAATTT-G-TTACGTGT-GAATATNTAACGAAGT-CGGGTTAGAAATTGCT-------ACCAATGC--AAAAAAAAAAAAAAAAAAAT--CA-GTTT-AGTGAAAG-GTTTATGAAAAT--GCCAC---C----AAAAATC-GTTTTACTGAAAGTTTTATGAATT-A-TGATTAGG-TTAATGAA-ATTTTGGAATAATAT-A-TTTCTTTTGCNAAAC-AAATAA-TTATATAATTGTCGCGATAGNTACC-GAACG
gi|1 : GAAAATTT-GA---CGAAGTTAT-AAGCAGAATC-AAAGGAGATATTA-GCGAAAAAC----TCGGAAC--CACAC-CTGAACGGAT-TTTTGA--AAAAGTC--GGTTCTA-GC-GCCA--A-ATCGC-TG-TGACGT-CAC-GTC-GT-TATATCGCCATCTTG--A--T-GAGAGAAA----GCG-TGTA--GA-TCAGCTGATAAT--TTCGC-ATA-TTTATATCATT-GTCTTTT-GTTT-T---G--GTGTCTACA--TGCTAT--ATGGT--A-TTTT-A-TTTAGTCGTGATCGTTGAA-GTTTT--CAGTCG------TAGTA--------TTCGTGAT-CGGCATTG-TA-AATACG-----------TAA----TA----T-ACTTTTGATTTGATTCGA---------T---G-TTGAAATG------TAC--TTCT-TTGG---GA--------------------------G-TTACAC-CCAAA-T--A--CTTAACATTC-CTCAT---AGCCATTG-AGAATTTTTCCAGCCTTGTG--AACATAC-A--TACAAGACAGTGA-CCGAAGCCTG-GT-GATAAT--TTGCTTCA--C--TACA---TATTTTAAT----CAT-TAAAAT-TATT-TC-AT--ATTTACGTATTTT--T-CT-C-GGAGTG-AAACC--ATACTGCC-----TCT--GAGA----G-ATCGATGAA--CAGATGAAAT--TTCTG-TTGTAG-AT---T-ATATTTT-TATTTCA-TT-TC-AT-GTAAGTACAG--------------ACA---TGTATAATATTCAGAGT----TGCA-AATTACCA----------C-T--------CA--------CATATATAATGAGTAATTTTATTTGTGGG-CG----ACCAA-ATTGTGAAAATCTTCT-CGCCAAC--AT-GGCGAGT-----AAAACTT-------AG---T------TTTT-AAAA-ATC-CGC-T-C-G-T--TTTTTGA-CG-CTGC--ATA-A-CGTTTGTTTGTTGCCGAAT---------G-T-------AATTCACATTTT-TAT------G-------------------------------------------GTGC-GTA-TTA-ATT-----A-GTAT--------AAT--TTTG-AA-ATGTTTTCTC-TCGAGTGAAGCTCAACTT-AGTATTT---TAACATGTAGCATACGTA
gi|1 : TT-GCTTACGTGT-GACTATA-AACGAAGT-CGGGTTAGAAATTGCtagacctatagggaatgtcaatctccaggaaaattactgcaggaatgtaaaattgttgaaaatgtgatacataaaaatgtatatatataaccttttcatgtaacagccaattaaaattaatcagatcgaatatttatattgtataccatgaaagtgtcttgcttacgtgtgactataaacgaagtcgggttagaaattgcagtttagtgaaaggtttatgaaaatgccataaaaaaaaatcaatatactgaaagttttatgaattatgatttttgaaattctggaataatatttcttttgcaaacaaataattatataattgtcacgatagatactagaatgttgcaagtatatgcgcatgtattttaaccgtacacttgtcacttagtgttttgcaatatacaatttaaaaatttccatgcagggaggtagaggaacactttctgcctgctgcacgatttccataggtctcagcatatgtggttacttttaacttttgttttgcagtaagcataacgtgtattttatagtaccatctaaatagagcgaaatttcgcaatttttgggatctgttttggaagtcatatgcacacattgaaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnctttctgggcggggttttaagttgatttatacaggtttagaaagttcaaacacat
gi|1 : gaaaatttgacgaagttataagcagaatcaaaggagatattagcgaaaaactcggaaccacacctgaacggatttttgaaaaagtcggttctagcgccaaatcgctgtgacgtcacgtcgttatatcgccatcttgatgagagaaagcgtgtagatcagctgataatttcgcatatttatatcattgtcttttgttttggtgtctacatgctatatggtattttatttagtcgtgatcgttgaagttttcagtcgtagtattcgtgatcggcattgtaaatacgtaatatacttttgatttgattcgatgttgaaatgtacttctttgggagttacacccaaatacttaacattcctcatagccattgagaatttttccagccttgtgaacatacatacaagacagtgaccgaagcctggtgataatttgcttcactacatattttaatcattaaaattatttcatatttacgtatttttctcggagtgaaaccatactgcctctgagagatcgatgaacagatgaaatttctgttgtagattatatttttatttcatttcatgtaagtacagacatgtataatattcagagttgcaaattaccactcacatatataatgagtaattttatttgtgggcgaccaaattgtgaaaatcttctcgccaacatggcgagtaaaacttagtttttaaaaatccgctcgttttttgacgctgcataacgtttgtttgttgccgaatgtaattcacatttttatggtgcgtattaattagtataattttgaaatgttttctctcgagtgaagctcaacttagtattttaacatgtagcatacgtatagacctatagggaatgtcaatctccaggaaaattactgcaggaatgtaaaattgttgaaaatgtgatacataaaaatgtatatatataaccttttcatgtaacagccaattaaaattaatcagatcgaatatttatattgtataccatgaaagtgtcAGAAATTGCA-GTTT-AGTGAAAG-GTTTATGAAAAT--GCCATAAAA----AAAAATC-AATATACTGAAAGTTTTATGAATT-A-TGATT----TT--TGAA-ATTCTGGAATA--AT-A-TTTCTTTTGC-AAAC-AAATAA-TTATATAATTGTCACGATAGATACTAGAATGagtttagtgaaaggtttatgaaaatgccataaaaaaaaatcaatatactgaaagttttatgaattatgatttttgaaattctggaataatatttcttttgcaaacaaataattatataattgtcacgatagatactagaatgttgcaagtatatgcgcatgtattttaaccgtacacttgtcacttagtgttttgcaatatacaatttaaaaatttccatgcagggaggtagaggaacactttctgcctgctgcacgatttccataggtctcagcatatgtggttacttttaacttttgttttgcagtaagcataacgtgtattttatagtaccatctaaatagagcgaaatttcgcaatttttgggatctgttttggaagtcatatgcacacattgaaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnctttctgggcggggttttaagttgatttatacaggtttagaaagttcaaacacat
gi|10 : gaaaatttgacgaagttataagcagaatcaaaggagatattagcgaaaaactcggaaccacacctgaacggatttttgaaaaagtcggttctagcgccaaatcgctgtgacgtcacgtcgttatatcgccatcttgatgagagaaagcgtgtagatcagctgataatttcgcatatttatatcattgtcttttgttttggtgtctacatgctatatggtattttatttagtcgtgatcgttgaagttttcagtcgtagtattcgtgatcggcattgtaaatacgtaatatacttttgatttgattcgatgttgaaatgtacttctttgggagttacacccaaatacttaacattcctcatagccattgagaatttttccagccttgtgaacatacatacaagacagtgaccgaagcctggtgataatttgcttcactacatattttaatcattaaaattatttcatatttacgtatttttctcggagtgaaaccatactgcctctgagagatcgatgaacagatgaaatttctgttgtagattatatttttatttcatttcatgtaagtacagacatgtataatattcagagttgcaaattaccactcacatatataatgagtaattttatttgtgggcgaccaaattgtgaaaatcttctcgccaacatggcgagtaaaacttagtttttaaaaatccgctcgttttttgacgctgcataacgtttgtttgttgccgaatgtaattcacatttttatggtgcgtattaattagtataattttgaaatgttttctctcgagtgaagctcaacttagtattttaacatgtagcatacgtatagacctatagggaatgtcaatctccaggaaaattactgcaggaatgtaaaattgttgaaaatgtgatacataaaaatgtatatatataaccttttcatgtaacagccaattaaaattaatcagatcgaatatttatattgtataccatgaaagtgtcttgcttacgtgtgactataaacgaagtcgggttAAGGGTCT-ATGCAATGCAA-TTCGA-TTTTCC----AGCAGAGTAAA-CA--CCTAATCCAATTAAAA---AT--A-T-ACTGAAAATTT-GA---CGAAGTTAT-AAGCAGAATC-AACGGAGATATTA-GCGAAAAAC----TCGAAAC--CACAC-CTGAACGGAT-TTTTGA--AAAAGTC--GGTTCT-AGC-GCCA--A-ATCGC-TG-TGACGT-CAC-GTC-GTGTATATCGCCATCTTG-GA--TAGAGAGAAA----GCG-TGTA--GA-TCAGCTGATAAT-TTTCGCGATA-TTTATATCATTTGTCTTTT-GATT-T---GGTGCATTTACA--TGCT-A--TAGGT--ATTTTT-A-TTTAGTCGTGATCGTTGAAAGTTTT--CAGTCGTAGCTATAGTA--------TTCGTGAT-CGGCATTG-TA-AATA-------------T------CA----T-A--------------CG--------------G-T---AATA------TATA-TTGG-TTTGATCGA-TGT--TG-AATGTACTTCTTTGGGAG-TTACAC-CCATA-T--A--CTTAACATTC-CCCAT---AACCAT-G-AGAATTTTCCCAGCCTTGTG--AACATAC-ttgcaagtatatgcgcatgtattttaaccgtacacttgtcacttagtgttttgcaatatacaatttaaaaatttccatgcagggaggtagaggaacactttctgcctgctgcacgatttccataggtctcagcatatgtggttacttttaacttttgttttgcagtaagcataacgtgtattttatagtaccatctaaatagagcgaaatttcgcaatttttgggatctgttttggaagtcatatgcacacattgaaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnctttctgggcggggttttaagttgatttatacaggtttagaaagttcaaacacat
gi|11 : TGAACGGAT-TTTTGA--AAAAGTC--GGTTCTA-GT-GCCA--A-ATCGC-TG-TGACGT-CAC-GTT-GTGTATATCGCCATCTTG-AA--TAGAGAGAAA----GCG-TGTA--AA-TCAGCTGATAAT-TTTCGCGATA-TTTATAT--------TTAT-GTTT-T---GGTGCATTTACA--TGCT-A--TAGGT--A-TTTTTA-TTTAGTCGTGATCGTTGAAAGTTTT--CAGTCG------TAGTA--------TTCGTGAT-CGGCATTT-TA-AATAC------------CGTAATATA----T-AT-------------TGATTTGATCGAT---G-TTG-AATG------TAC--TTCT-TTGG---GA-TGCG-TGGAA-----------AAAAG-TTACAC-CCATA-T--A--CTTAACATTC-CCCAT---AGCCATTG-AGAATTTTTCCAGCCTTGTG--AACATAC-A--TACATGGCAGTGG-CTGAAACCTG-GT-GATAAT--GTGCTTTA--C--TACA---TATTTTAAT----CAT-TATAAT-TATT-TC-A--TATTTACGTATTTT--T-CT-C-GGACTG-AAACC--ATACTGCA-----TCT--GAGA----G-A
gi|12 : AAGGGTCT-ATGCAATGCAA-TTCGA-TTTTCC----AGCAGAGTAAA-CA--CCTAATCCAATTAAAAC-TAT--A----CTGAAAATTT-GA---CGAAGTTAT-AAGCAGAATC-AACGGAGATATTA-GCGAAAAAC----TCGAAAC--CACAC-CTGAACGGAT-TTTTGA--AAAAGTC--GGTTCTA-GC-GCCA--A-ATCGC-TG-TGACGT-CAC-GTC-GTGTATATTGCCATCTTG-GA--TAGAAAGAAA----GCG-TGTA--GA-TCAGCTGATAAT-TTTCGCGATA-TTTATATCAT-----TTGT--------------------------CT-T-----------TTGT---TTTGGTCGTGATCGTTGAAATTTTC--CAGTCG------TAGTA--------TTCGTGAT-CTGCATTG-TATAA-----------------------A----A-AC-------------CG----------TACGG-T---AATA------TAT--
gi|13 : aGCGAAT-----AAA-CTT-------AC---CGT----TTTT-AAAA-ATCGCGC-C-C-G-T--CTGTTGA-CGGCTCC--ATT-A-CGTT----------------------------------AATA-ACATTCT-T-TTTCCA-GAAAT-TTTTAATGCG-A-----AA---AA-------G-----TGTGC-GTATTTACAT-------TGTATGT--ACAGAAGAATTTG-AAGTCGTTTCTTCTTC--GTAAAGCTCGTGTT-AGAA-TT-G-TTACGTGG-GAAattgatttgat
gi|13 : AGTTCGGGTTAGAAATTGCTTAGCCATGCCAATAA--AAAAAAAAAAAAAAAAAATC--CA-TGTT-AGTGGAAattagtcagtaacttcgagaaagtttggtgtgtgtatggagcagttcgggttagaaattgcttagccatgccaataaaaaaaaaaaaaaaaaaaatccatgttagtggaatccttgaatccacgttagagtggtttttaatggtatttttct
gi|14 : gcgaataaacttaccgtttttaaaaatcgcgcccgtctgttgacggctccattacgttaataacattctttttccagaaatttttaatgcgaaaaagtgtgcgtatttacattgtatgtacagaagaatttgaagtcgtttcttcttcgtaaagctcgtgttagaattgttacgtgggaaattagtcagtaacttcgagaaagtttggtgtgtgtatggagcAAGGGTCT-ATGCA-TGCAA-TTCGA-TTTTTA----AGCATAGTAAA-CA--CCTATTCCAATAAAAAC-TAT--A----CTGAAAATTT-GA---CGAAG------------ATC-AACGGAGATATTA-GCGAAAAAC----TCGAAAC--TACAC-CTGAACAGAT-ATTTGA--AAAAGTC--GGTTCT-AGC-GCCA--A-ATCGC-TG-TGACGT-CAC-GTC-GTGTATATCGCCATCTTG-GA--TAGAGAGAAA----GCG-TGTA--GA-TCAGTTGAT-ATATTTTGCGATA-TTTATA----TCAT-TTGT-ATTT-T---Gtccttgaatccacgttagagtggtttttaatggtatttttct
gi|15 : aTCT-ATGCAATGCAAATTCGA-TTTTCCA---GGCAGAGTAAA-CA--CCTAATCCAATTTAAA--CAT--A-TATCTGAAAATTTGGA---CG-ACATAT-AAGCAGAATC-AATGGAGATATTA-GCGAAAAACGCGACCGAAAC--CACAT-CTGAACGGA--TTTTGA--AAAAGTC--GGTTTCTAGC-GCCA--A-ATCGCTTGTTGACGT-CAC-GTCTGTGTATATCGCCATCTTGAGA--TAGAGA
gi|16 : TTAAAA--AATCGA-T-CCTGAAAATTT-TATTGCGATCGTAC-A---TGTACT-ATTGGAGATATTT-GGGGTAA------TCACAATTTCACAC-CTGAAC-GAC-TTTTAA--ACCGGGC--TGTTTT-GGT-GCGATTA-AT-GT-CG-TGACGT-CAC-GAG-GTCAACATCGCC
gi|17 : taaaagatatctgcaaccccggtcatttgttttaaatttggagggttacagt-ATGCAGGGTATGTTGCA-AATAACCAGTTGCCCACTC-T--------TG--------CAAATGA---GAATA----TATTT-TGTG-TGC-A-ACCAA-AATATGAAAATCCTAT-TGCCAAC--AT-GGTGTGT-----AAAATTT-------AC---CGTAACTTTTC-CAAA-ATC-CAC-T-T-G-C--AGTTTAA-CA-TTAC--ATT---TGTTT-
gi|18 : AGGGT----TGCA-AATAACCA----------C-T--------CG--------CAAATGC---GAGTAATTTTATTTGTGG---GC-G-ACCAG-TTTATGAAAGTTCTCT-CGCCCAC--AA-GGCGAGT-----AAAAATTTATCGTAAC---T------TTTC-TGGA-ATT-CGT-T-C-A-C--AGTTTGA-agaaggtttcaacttctga
gi|2 : AAAGGTCT-GTGCAATGCAA-TGCTA-TTTTTT----GATAAAATAAAATA--TCTACTCAAA--AAAAT-GAT--G-T-CCTGAAAATTT-GA---CGAAGATAC-TGACTGAATT-AACAGAGATATTACGCGAAAAAC----TC-CAAT--CACAC-CTGAACGTAT-TTTTGA--AAAAGCC--GGGTTTAAGC-GCCA--A-ATCGC-TG-TGACGT-CAC-CGC-ATGTTTTGAGCCATATCG-AAAGTAGAAAAACA----GTA-CGAAT-GA-GCAGTTGA----ATTTCGCT-TAGTTTGAATTGTTTGT-TTGT-ATTT-TC--AACGTATTTAAA--TGTT-T--AAGAT--A-TTAA-A-TTT----GTGATCGTTGAAAGTTTT--CAGTCG------TAGTA--------TT-GTGAT-CGGCACTG-TA-AAT--------------T------TA----T-AC-------------CG----------T---G-T---ATTG------TAT--TTCT-TTC----GA-CGTG-TG-AG-----------AAAAG-TTGCAC-TTATA-T--C--CATAACATTC-ACTAG---AGCCATGG-AGAA-TTTTCCAGCATTGTG--AACATAC-AA-TATAAGGCAGTGA-CTGAACCCTG-GT-TATAAT--TTGATTTA--C--TAC----------------------ATAAT-TATT-TC-ATGCATTTACGTATTTT--T-CT-C-CGACTG-AAA-C--ATATTGCC-----TCT--GAGA----G-AT----GAA--CGGATGAAAT--TTCT-------G-AC---T-ATACTTT-TATTTTA-TT-TA-CT-GTAGGTACAG--------------AC----TG----A-ATTCAGGGT----TGCA-AATAACCA----------C-T--------CG--------CATATGC---GAGTAA-TTTATTTGTGGG-CGCGG-ACCAA-ATTGTGAAAATCCTCT-CCGCCAC--AT-GGCGAAT------AAACTT-------AC---C------TTTT-AAAA-ATC-CGC-C-C-G-T--CGTTTGA-CG-CTGC--ATC-A-CA--------------------------G-T-------AATACACATTTT-TATTTCCA-GAAAT------------------AA---GT-------G-----TGTGC-GTATTTACATTGTACAGTGTATGT--AC-GAAT--TTTG-AA-TCGTTTTCTC-TC--GT-AAGCTCGTGTTAAGAATTT-G-TTACGTGT-GAATATTTAACGAAGT-CGGGTTAGAAATTGCT-------ACCAATGC-------AAAAAAAAAAAAAAT--CA-GTTT-AGTGAAAG-ATTTATGAAAAT--GCCAC---C----AAAAATC-GTTTTACTGAGAGTTTTATG-ACT-ATTGATTAGGCCTAATGAA-ATTTTGG-ATAATAT-ATTTTCTTTTGCAAAAC-AAATAA-CTATATAATTGTCGCGATAGCTACC-GAACGatcaacttttacttgcactttcg
gi|21 : tAGGATATCATGCAATGAAA-TGCGATTTTTTT----GGTAGAATAAA-CA--TCTAT--CAA--GAAATAAAC--ACT-TCCGAAAAATT-Ga
gi|22 : TTCAGGGT----TGCA-AATAACCA----------C-T--------CGTCCACTTGCATATGC---GAGTAATTTTATTTGT
gi|23 : ct--------A-----AA---GT-------G------GTGC-GTATTTACATT-----GT--ATGT--ACAGAAT--TTTG-AA-TCG
gi|24 : gcgaaTGCAA-TTCGA-TTTTCC----AGCAGAGTAAA-CA--CCTAATCCAAT
gi|25 : AAGGGTCT-ATGCAATGCAA-TTCGA-TT
gi|3 : taAAGGGTCT-ATGCAATGAAA-TGCGA-TTTTTTTTTTGGTAGAATAAA-CA--TCTACTCAAAT--AAAT-AAT--G-T-CCTGAAAATTTTGA---CGAAGATAC-TGGCTGAATT-AACAGAGATATTA-GCGAAAAAC----TCCAA-T--TATACACTGAAAGTAT-TTTTGA--AATAGTC--GGAT-TAAGCCGC----A-ATCGC-TG-TGACGT-CAC-A-----------CAC---------A--TAAACAGCAA----G---TACA--GA-TCAACAGTTGG-ATGTCGCTTTG-TTTGAATTGTTTGT-TTGTAGTTT-T---AACGTACT---A--T----T--AA----------A-A-TTTAGT---GATCGTTGAA-GTTTT--CAGTCG------TAGAA--------TTGGTGAT-CG-CATTG-TA-AATACGCGTGATATATAT------TAGATTTGAT-------------CGAA--------T---G-TTG-AATG------TAC--TTCT-TTGG---GA-CGCG-TG--G-----------AAAAGATTACAC-CCATA-T--A--CTTAACATTC-CC-AT---AGCTGT-G-ATAGTTTTTCCAGTCTTGTG--AACATAC-A--TACAAGGCAGTGGGCTGAAGCCTG-GT-GATAAT--TTGCTTTA--C--TGCAATATATTTTAAT----CAT-TATGAT-TATT-TC-AT--ATTTA-GTATTTT--T-CT-C-GGACTG-AAACC--ATACTGCC-----TCT--GAGAGATCG-AT----GAA--CAGATGAAAT--TTCTGTT-GTAGAAA---T-ATACTTT-TATTTTA-TT-TA-CT-GTAGGT--AG--------------ACA---TA----ATATTCAGGGT----TGCA-AATAA-CA----------CAT--------CT--------AAT-------GAGT-ATTTTATTTGTGA---GT-G-ACCAA-ATTGTGAAAAT-CTCT-CGCTCACATAT-GGCGAGT------AAACTT-------AC---T------TTTT-AAAAGATC-CGCATGC-GTT--CTTTTGA-CG-CTGC--A-T-A-CGTTTGTTGCCGAG----T---------G-T-------AAT-CATATTTT-TATTTCGA-GAAAT-TTT--------AATGTGAA---GT-------G------GTGC-GTATCAACAT-------TGTATGT--ACAGAAT--TTTG-AA-T--TTTTCTC-GA--GTGAAGCTC
gi|4 : taGGGT----TGCA-AATAACCA----------C-T--------CG--------C-----C------TAATTT-ATTTTTT-----C----CCAA-ATT-TGAAAATCCTCT-AGTCCAC--ATTGGCGAGTTGCCTAAAACTT---------------------TT-CAAA-ATC-GGG-T-C-G-T--GGTTTCA-CGGCTGCCAATT-AACGTTT-T-----------TTTGCCGAATG-T-------AATACACATTTC-C--CCCCAAGAAAT-TTC--------A-----CAT--GT-------GAAAAATGTGCCGTATTATCATT-----GT--ATGT--GCAGAAT--TTTT-AA-CTGTTTTTCC-TCAAGTGGAa
gi|4 : cACGTGC-GAA-ATATACCGAAGT-CGGGTTAGAAAATTCT-------ACCCCC-C--AAAAA--------------T--CA-GTTTTAGTGAAAG-GTTTATGAAataatcagagacgtacataatattatagtacacacataattatacatgtatagcgaaagtcgatctcttagaaaattactgcaggaacgtaaaattgttgcaaatgtgtacttaaagatagatctataaatcaaaacttattttgtaatagtaaattaaattaatcagattgaatctttatattgtatgcatatgccgtttaattgtcttgcgccacgtgcgaaatataccgaagtcgggttagaaaattctaccccccaaaaatcagttttagtgaaaggtttatgaattatgattaatgaaattttggaattaatctttcttttgccaaagaaataatttatttaattgttgcgatatactagtatacgagaaggtggccgatcacatgcgcatctgtactagctcatgatctttccagctgattccatatcggaggtagaggaaaacttttctgcctgctgcacgattttcacgggtctcagcatatgcggggttacttttaacctttgttgcagtaagtgtaccgtnnnnnnnnnnnnnnnnnnnnnnnnnatcaaaatgt
gi|4 : cgggttgcaaataaccactcgcctaatttattttttcccaaatttgaaaatcctctagtccacattggcgagttgcctaaaacttttcaaaatcgggtcgtggtttcacggctgccaattaacgtttttttgccgaatgtaatacacatttccccccaagaaatttcacatgtgaaaaatgtgccgtattatcattgtatgtgcagaatttttaactgtttttcctcaagtggaataatcagagacgtacataatattatagtacacacataattatacatgtatagcgaaagtcgatctcttagaaaattactgcaggaacgtaaaattgttgcaaatgtgtacttaaagatagatctataaatcaaaacttattttgtaatagtaaattaaattaatcagattgaatctttatattgtatgcatatgccgtttaattgtcttgcgccG-GGTTA-GAAAAT--TCTAC---CCCCCAAAAATCAGTTTTAGTGAAAGGTTTATGAATT-A-TGA------TTAATGAA-ATTTTGGAATTA-AT-C-TTTCTTTTGCCAAAG-AAATAATTTATTTAATTGTTGCGATAttatgattaatgaaattttggaattaatctttcttttgccaaagaaataatttatttaattgttgcgatatactagtatacgagaaggtggccgatcacatgcgcatctgtactagctcatgatctttccagctgattccatatcggaggtagaggaaaacttttctgcctgctgcacgattttcacgggtctcagcatatgcggggttacttttaacctttgttgcagtaagtgtaccgtnnnnnnnnnnnnnnnnnnnnnnnnnatcaaaatgt
gi|5 : cgggttgcaaataaccactcgcctaatttattttttcccaaatttgaaaatcctctagtccacattggcgagttgcctaaaacttttcaaaatcgggtcgtggtttcacggctgccaattaacgtttttttgccgaatgtaatacacatttccccccaagaaatttcacatgtgaaaaatgtgccgtattatcattgtatgtgcagaatttttaactgtttttcctcaagtggaataatcagagacgtacataatattatagtacacacataattatacatgtatagcgaaagtcgatctcttagaaaattactgcaggaacgtaaaattgttgcaaatgtgtacttaaagatagatctataaatcaaaacttattttgtaatagtaaattaaattaatcagattgaatctttatattgtatgcatatgccgtttaattgtcttgcgccacgtgcgaaatataccgaagtcC-ATGTATTGTCACATTTTATT-CTTN-NNNNNN-NNNNN--NNNNNNNN-----NNN--NNGA----A-TT----GAA--CGGATGAAAT--TTCTG--------AC---T-AT-CTTTATATTTTA-TT-TATCT-GTAGGTA-AG--------------AC----TG----A-ATT-AGGGT----TGCACAATAAC-A----------C-T--------CGG-------CAAATG----GAGTAATTTATTTTGTGGG-GGC-G-GACAATAATGTGAAAATCCTCTTCGCC-AC--AT-GG-GAAT-----AAA-TTT-------AC---C------TTTT-AAAA-ATC-CGC---C-G-T--CGTTTGA--G--TCC--ATT-A-AA--------------------------G-T-------CA-ATACATGTT-TATTT-CA-GAATT-TTTTATGCGA-A-----AA---GT-------G------GTGC-GTATTTAC-TT-----G-GCATGT--ACAAGAT--TTTGAAA-TCGTTTTCTC-TC--GTAAAGCTCGTGTTAAGAATTTAG-TTACGTGT-GAATATTTAACG-AGT-CGGGTAAG-AATTG-T-------ACCAATGCAAAAAAAAAAAAAAAAAAAAAT--CAGGTTT-AGTGACAGAATTTATGAAAATTGGCCAC---C-----AAAATC-GTTTTA-TGAGAGTTTTATGAGTTAA-TGATTAGG-CCTATGAAGATTTT-GAAT-ATATAA-TTTCTTTTGCAAAACAAAATAA-ATATATAATTGTCGCGATAGCTACC-GAAtactagtatacgagaaggtggccgatcacatgcgcatctgtactagctcatgatctttccagctgattccatatcggaggtagaggaaaacttttctgcctgctgcacgattttcacgggtctcagcatatgcggggttacttttaacctttgttgcagtaagtgtaccgtnnnnnnnnnnnnnnnnnnnnnnnnnatcaaaatgt
gi|6 : gacaattcgctgcaataataaaAAAGGTCT-GTGCAATGCAA-TGCTA-TTTTTT----GATAGAATAAA-CAATCATAACTCAAAGTAATT-GAT--G-T-C-TGAAAATTT-GA---CGAA-ATACTAGGCTGAATTTAACAGAGATATTA-GC-AAAATC----TCCAAAT--CACAC-CTGAAACGTTATTTTGACTAATAGTCCTGGTTC--AGTTGCCA--ATATCGC-TG-TGACGTTCACCGTC-ATGTTTGAGGCCATTATC-GA--AAGAGAAAAAACAAGCGACGTAATGAGTCAGTTGA----ATTTTGCGAC----TAGATAGTT-GT-TTGTTGTTT-TTTCAACGTATTTATAGATGTT-T--AAGAT--A-CTAA-AATTTAGT---GATCGTAGACAGTTTTTTCAGTCG------TAGTACATGTATTTTGGTGAT-CGCAATTG-TA-AAT---------------------TA----T-AC-------------CG----------T---G-T---A---------TATTGTTCTATTCG---GA-CGTGATG-AA-----------AAAAG--TGCACATTATA-T--C--CATAACATTT-CACACTGAGGCCATTG-GAATTTTTTCCAGCATTGTGA-AACATAA-AATTATAAGG-AATGG-CTGAACACTGTGT-TATTAC--TTGATTTAACT--TAC----TATGTTGATAACACATATATAAT-TATT-TCTCTGTATTTACGTATTTT--TCCT-C-CGACTGTAAGCC--ATACTGCC-----TCT--GAGA----G-AT----GAACGCGAATGAAAT--TTCT-------G-AC---T-ATATTTT-TATTTTATTT-TA-CT-GTAGgaaaggttgcagtacctatttttacccggatttcaaccgtgccttgtcatttgtaggcctgaggttttcgaccacggtctacatag
gi|7 : TTAAA--GGCC-TCTAAGATTAA-TTAA-AATTTAGT---GATCGTTGAAAGTTTT--CAGTCG------TAGTA--------TTTGTGATCCGGCATTGCTA-AA-AT------------T------TA----T-AC-------------CG----------T---GAT---ATTG------TAT--TGAT-TT-----GATCGTGCTG-AG-----------AAAAG-TTGCACATTATA-TTCC--CATAACATTCACCCAG---AGCCATGATAGAATTTTTCCA-CCATGTGAAAACATACAAA-TATAGGGCAGTGG-CT-AACCCTG-TTATATACTCCTTGATTCA--CCATACA---TATTTTAAA----CAT-TATAATCTATTCTC-ATGTATTTACGTATTTT--T-CTACGCGACTG-AAACC--ATACTGCCACAAATCT--GAGA----GAAT----GAA--CGAATGAAATTGTTCT--T----G-AC---TAATACTTT-TATTTTA-TTCTA-CTAGTAGGTACAGCCTCCGGAGTAGGTACAGACTGA---A-ATTCAGGGT----TGCA-AATAACCA----------CTT--------CG--------CATATGC---GAGTAATTTTATTT-TGGGCCGC-GAACCAA-ATTGTGAAAATCCTCT-CGCCCAC--AT-GGCGAAT-----AAAACTT-------ACCCTC------TTTTAAAAA-ATC-CGC-C-CGG-TTGGGTTTGATCG-CTGC--ATTCA-CA--------------------------GCT-------AATACACATTTTCTATTTCCA-GAAATCTTT--------A-----AATCTGCAAAACAAG-----TGTGC-GTATTTACA-------ATGTATGCTAACAGAAT--Tt
gi|8 : ATTGTTTGT-TTGT-ATTTCT---AACATATTTAAA--TGTT-TT-AAGAT--A-TTAA-AATTTAGT---GATCGTTGAAAGTTTT--CAGTTG------TAGTA--------TTCGTGAT-CGGCATTG-TA-AAT--------------T------TA----T-AT-------------CG----------T---GAT---ATTGGTTTGATAT--TTCT-TTCG---GA-CGTG-TG-AG-----------AAAAG-TTACACATTATAAT--ATCCATAACATTC----------ACCATGG-AGAATGTTTCCAGCATTGTG--AACATAC-AA--ATAAGGCAGTGG-CTGAAGCCTG-GT-TATAAT--TTGCTTTA--C--TACA---TATTTTAAA----CAT-TATAAT-TATT-TC-ATGTATTTACGTATTTT--T-CT-C-CGACTG-AAACCATATACTGCC-----TCTGCGAGATC--G-AT----GAA--GGGATGGAAT--TTCTGAT-GTAG-ACTATT-ATACTTT-TATTTTA-TA-TT-CT-GTAGGTACAG--------------AC----TT----A-ATTCAGGGT----TGCA-AATAACCA----------C-TCGGCCACACG--------CATATGC---GAATAATTTTATTTTTGG---GC-G-ACCAA-ATTGTGAAAATCCTCT-CATCCAC--AT-GGCGTGT-----AAAACTT-------AC---C------TTTT--AAA-ACC-CGC-T-C-G-T--GGTTTGA-CG-CTGC--ATT-A-CGCTTGT-----------T---------G-CCAAATGAAATACACAATTT-TATTTCCA-GAAAT-TTTTAATGTGAA-----AA---GT-------G------GTGC-GTATTTACAT-------TGTATGT--ACAGTAT--TTTG-AA-CCGTTg
gi|9 : AAAAAAGAAAT--CT-GTTT-AGTGAAAG-GTT-AT--AAAT--GCCAC---C----AATAATC-GATTTACTGAAAATTTCATGAATT-A-TTAAT-GA-TTAATGAA---TTTGGAATAA-AT-A-TTTC-TTTGCTAAAC-AGAT-A-TTTTATAATTGTCGCGATAGATA-C-GAA
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|19 ): TAGCCGAACGAACAGGATGTCATGGCCGAGTACCTATTTAAACCCGTAGATAAAAACCGTGGGTTGCACTTGTCATTGTAGGCCGAGGTTTTCGACCCGACGGTCTAACCTCAGGTGA
Unaligned ( gi|20 ): ATAGAAGTGTATTCTCAGATTCATTTGAACTCATGAATTTGAAGTGATCATCAGAACAATTTTGATTAGTTTATTTATAA
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111 111111111111111111111111111111111111
lowQualScore : 1111 111 111 1111111 11 1111 11 22222 11 111111 22222222222222222222 111 111111 11111111 0000000000000000000000000000000000000000000000000000000000000000000 111111 11 11111 1 22222222222222 2 11111 1111 1 11 11 1111 11111 1 11111 1111 1111 5555555 111 5555555555555555555555555555 2222222222222222222222222222222 1111 111111 2222222222222222222 000000000000000000000000000000000000 888888888888888888888888888888888888888 222222222 11 1 111 3333333 11111 11 222222222 222222 222 111 1
lowQualScore : 4 4 0 4 3333 4 66 1 111 777 4444444 8 777 66 999 2 4 4 9999 2 66 4 4 55 55 77 8 55 4 4 4 4 4 0 4 66 66 0000 5 11 5 55555 22 5 0 3 7 8 00 5 999999 4 66 11111111111111111111 777 1 66 222222 66666666 2 4 4 4 0000000000000000000000000000000000000000000000000000000000000000000 5 222222 00 5 55555 55 0 88888888888888 5 1 5 33333 1 5 1 0000 0 5 11 5 77 5 1 5 77 77 0 88888 5555 44444 5 5 5 5 5 66 5 0 55 5 66 22222 66 7777 5 2222 77 77 0000000 5 000 5 5 5 5 5 5 2 8888888888888888888888888888 8888 4 5555555555555555555555555555555 1 8888 5 9999 999 4 4 1 66 4 000000 0 5555555555555555555 77 4 4 888 4 4 666 4 8 66 555 222222222222222222222222222222222222 0 5 3 5 222222222222222222222222222222222222222 4 666666666 66 66 5 5 0 6 88 3 5 3 666 6 0 11 3 8 0 2222222 99999 3 99 6 6 6 11 666666666 8 1 5 0 8 8 888888 6 88 0 222 111 0 8 8 0 8 1 2 0
lowQualScore : . . . . .... . .. . ... ... ....... . ... .. ... . . . .... . .. . . .. .. .. . .. . . . . . . . .. .. .... . .. . ..... .. . . . . . .. . ...... . .. .................... ... . .. ...... ........ . . . . ................................................................... . ...... .. . ..... .. . .............. . . . ..... . . . .... . . .. . .. . . . .. .. . ..... .... ..... . . . . . .. . . .. . .. ..... .. .... . .... .. .. ....... . ... . . . . . . . ............................ .... . ............................... . .... . .... ... . . . .. . ...... . ................... .. . . ... . . ... . . .. ... .................................... . . . . ....................................... . ......... .. .. . . . . .. . . . ... . . .. . . . ....... ..... . .. . . . .. ......... . . . . . . ...... . .. . ... ... . . . . . . . .
lowQualScore : 4 0 6 0 9999 4 11 0 888 777 8888888 0 888 44 333 6 4 4 4444 9 11 4 0 55 55 99 0 55 0 0 0 0 0 9 0 33 11 6666 0 99 0 88888 99 0 5 7 2 9 22 0 000000 1 11 66666666666666666666 888 9 11 888888 11111111 9 4 4 4 8888888888888888888888888888888888888888888888888888888888888888888 1 888888 66 0 88888 22 0 00000000000000 0 6 0 88888 0 0 4 6666 8 0 99 0 77 7 0 7 00 99 7 00000 0000 00000 7 7 7 0 6 99 0 0 88 0 99 55555 99 5555 0 1111 99 99 7777777 7 000 7 7 7 7 7 7 5 4444444444444444444444444444 5555 0 2222222222222222222222222222222 2 6666 0 7777 000 4 4 1 11 4 888888 8 2222222222222222222 33 0 0 444 0 0 555 0 9 11 333 000000000000000000000000000000000000 4 0 2 0 222222222222222222222222222222222222222 4 000000000 11 11 0 0 2 7 33 7 5 2 000 7 8 88 2 0 8 5555555 88888 2 22 7 7 7 00 888888888 0 4 0 8 0 0 444444 0 88 8 222 888 8 8 0 8 0 0 5 0
consensus : NAAGGGTCT-ATGCAATGCAA-TTCGA-TTTTCC----GGCAGAGTAAA-CA--CCTANTCCAATTAAAAT-NAT--A-T-CCTGAAAATTT-GA---CGAAGNTAC-AGGCNGAATC-AACGGAGATATTA-GCGAAAAAC----TCGAAAC--CACAC-CTGAACGGAT-TTTTGA--AAAAGTC--GGTTCTAAGC-GCCA--A-ATCGC-TG-TGACGT-CAC-GTC-GTGTATATCGCCATCTTG-GA--TAGAGAGAAA----GCG-TGTA--GA-TCAGCTGATAATATTTCGCGATA-TTTATATCGTTTGT-TTGT-GTTT-T---GACGTATTTANA--TGCT-T--AAGGT--A-TTNN-A-TTTAGTCGTGATCGTTGAAAGTTTT--CAGTCG------TAGTA--------TTCGTGAT-CGGCATTG-TA-AATAC------------T------TA----T-AC-------------CG----------T---G-T---AATG------TAT--TTCT-TTCG---GA-CGTG-TG-AG-----------AAAAG-TTACACACCATA-T--A--CNTAACATTC-CCCAT---AGCCATNG-AGAATTTTTCCAGCCTTGTG--AACATAC-AA-TACAAGGCAGTGG-CTGAANCCTG-GT-TATAAT--TTGCTTTA--C--TACA---TATTTTAAT----CAT-TATAAT-TATT-TC-ATGTATTTACGTATTTT--T-CT-C-CGACTG-AAACC--ATACTGCC-----TCT--GAGA----G-AT----GAA--CGGATGAAAT--TTCTG-T-GTAG-AC---T-ATACTTT-TATTTTA-TT-TA-CT-GTAGGTACAG--------------ACA---TG----A-ATTCAGGGT----TGCA-AATAACCA----------C-T--------CG--------CATATGC---GAGTAATTTTATTTGTGGG-CGC-G-ACCAA-ATTGTGAAAATCCTCT-CGCCCAC--AT-GGCGAGT-----AAAACTT-------AC---C------TTTT-AAAA-ATC-CGC-T-C-G-T--NGTTTGA-CG-CTGC--ATT-A-CGTTT-T-----------T---------G-T-------AATACACATTTT-TATTTCCA-GAAAT-TTT--------A-----AA---GT-------G-----TGTGC-GTATTTACATT-----GTGTATGT--ACAGAAT--TTTG-AA-TCGTTTTCTC-TC--GTGAAGCTCGTGTTAAGAATTT-G-TTACGTGT-GAATATNTAACGAAGT-CGGGTTAGAAATTGCT-------ACCAATGC--AAAAAAAAAAAAAAAAAAAT--CA-GTTT-AGTGAAAG-GTTTATGAAAAT--GCCAC---C----AAAAATC-GTTTTACTGAAAGTTTTATGAATT-A-TGATTAGG-TTAATGAA-ATTTTGGAATAATAT-A-TTTCTTTTGCNAAAC-AAATAA-TTATATAATTGTCGCGATAGNTACC-GAACG
Reference ( family-926 ) : NAAGGGTCT-ATGCAATGCAA-TTCGA-TTTTCC----GGCAGAGTAAA-CA--CCTANTCCAATTAAAAT-NAT--A-T-CCTGAAAATTT-GA---CGAAGNTAC-AGGCNGAATC-AACGGAGATATTA-GCGAAAAAC----TCGAAAC--CACAC-CTGAACGGAT-TTTTGA--AAAAGTC--GGTTCTAAGC-GCCA--A-ATCGC-TG-TGACGT-CAC-GTC-GTGTATATCGCCATCTTG-GA--TAGAGAGAAA----GCG-TGTA--GA-TCAGCTGATAATATTTCGCGATA-TTTATATCGTTTGT-TTGT-GTTT-T---GACGTATTTANA--TGCT-T--AAGGT--A-TTNN-A-TTTAGTCGTGATCGTTGAAAGTTTT--CAGTCG------TAGTA--------TTCGTGAT-CGGCATTG-TA-AATAC------------T------TA----T-AC-------------CG----------T---G-T---AATG------TAT--TTCT-TTCG---GA-CGTG-TG-AG-----------AAAAG-TTACACACCATA-T--A--CNTAACATTC-CCCAT---AGCCATNG-AGAATTTTTCCAGCCTTGTG--AACATAC-AA-TACAAGGCAGTGG-CTGAANCCTG-GT-TATAAT--TTGCTTTA--C--TACA---TATTTTAAT----CAT-TATAAT-TATT-TC-ATGTATTTACGTATTTT--T-CT-C-CGACTG-AAACC--ATACTGCC-----TCT--GAGA----G-AT----GAA--CGGATGAAAT--TTCTG-T-GTAG-AC---T-ATACTTT-TATTTTA-TT-TA-CT-GTAGGTACAG--------------ACA---TG----A-ATTCAGGGT----TGCA-AATAACCA----------C-T--------CG--------CATATGC---GAGTAATTTTATTTGTGGG-CGC-G-ACCAA-ATTGTGAAAATCCTCT-CGCCCAC--AT-GGCGAGT-----AAAACTT-------AC---C------TTTT-AAAA-ATC-CGC-T-C-G-T--NGTTTGA-CG-CTGC--ATT-A-CGTTT-T-----------T---------G-T-------AATACACATTTT-TATTTCCA-GAAAT-TTT--------A-----AA---GT-------G-----TGTGC-GTATTTACATT-----GTGTATGT--ACAGAAT--TTTG-AA-TCGTTTTCTC-TC--GTGAAGCTCGTGTTAAGAATTT-G-TTACGTGT-GAATATNTAACGAAGT-CGGGTTAGAAATTGCT-------ACCAATGC--AAAAAAAAAAAAAAAAAAAT--CA-GTTT-AGTGAAAG-GTTTATGAAAAT--GCCAC---C----AAAAATC-GTTTTACTGAAAGTTTTATGAATT-A-TGATTAGG-TTAATGAA-ATTTTGGAATAATAT-A-TTTCTTTTGCNAAAC-AAATAA-TTATATAATTGTCGCGATAGNTACC-GAACG
gi|1 : GAAAATTT-GA---CGAAGTTAT-AAGCAGAATC-AAAGGAGATATTA-GCGAAAAAC----TCGGAAC--CACAC-CTGAACGGAT-TTTTGA--AAAAGTC--GGTTCTA-GC-GCCA--A-ATCGC-TG-TGACGT-CAC-GTC-GT-TATATCGCCATCTTG--A--T-GAGAGAAA----GCG-TGTA--GA-TCAGCTGATAAT--TTCGC-ATA-TTTATATCATT-GTCTTTT-GTTT-T---G--GTGTCTACA--TGCTAT--ATGGT--A-TTTT-A-TTTAGTCGTGATCGTTGAA-GTTTT--CAGTCG------TAGTA--------TTCGTGAT-CGGCATTG-TA-AATACG-----------TAA----TA----T-ACTTTTGATTTGATTCGA---------T---G-TTGAAATG------TAC--TTCT-TTGG---GA--------------------------G-TTACAC-CCAAA-T--A--CTTAACATTC-CTCAT---AGCCATTG-AGAATTTTTCCAGCCTTGTG--AACATAC-A--TACAAGACAGTGA-CCGAAGCCTG-GT-GATAAT--TTGCTTCA--C--TACA---TATTTTAAT----CAT-TAAAAT-TATT-TC-AT--ATTTACGTATTTT--T-CT-C-GGAGTG-AAACC--ATACTGCC-----TCT--GAGA----G-ATCGATGAA--CAGATGAAAT--TTCTG-TTGTAG-AT---T-ATATTTT-TATTTCA-TT-TC-AT-GTAAGTACAG--------------ACA---TGTATAATATTCAGAGT----TGCA-AATTACCA----------C-T--------CA--------CATATATAATGAGTAATTTTATTTGTGGG-CG----ACCAA-ATTGTGAAAATCTTCT-CGCCAAC--AT-GGCGAGT-----AAAACTT-------AG---T------TTTT-AAAA-ATC-CGC-T-C-G-T--TTTTTGA-CG-CTGC--ATA-A-CGTTTGTTTGTTGCCGAAT---------G-T-------AATTCACATTTT-TAT------G-------------------------------------------GTGC-GTA-TTA-ATT-----A-GTAT--------AAT--TTTG-AA-ATGTTTTCTC-TCGAGTGAAGCTCAACTT-AGTATTT---TAACATGTAGCATACGTA
gi|1 : TT-GCTTACGTGT-GACTATA-AACGAAGT-CGGGTTAGAAATTGCtagacctatagggaatgtcaatctccaggaaaattactgcaggaatgtaaaattgttgaaaatgtgatacataaaaatgtatatatataaccttttcatgtaacagccaattaaaattaatcagatcgaatatttatattgtataccatgaaagtgtcttgcttacgtgtgactataaacgaagtcgggttagaaattgcagtttagtgaaaggtttatgaaaatgccataaaaaaaaatcaatatactgaaagttttatgaattatgatttttgaaattctggaataatatttcttttgcaaacaaataattatataattgtcacgatagatactagaatgttgcaagtatatgcgcatgtattttaaccgtacacttgtcacttagtgttttgcaatatacaatttaaaaatttccatgcagggaggtagaggaacactttctgcctgctgcacgatttccataggtctcagcatatgtggttacttttaacttttgttttgcagtaagcataacgtgtattttatagtaccatctaaatagagcgaaatttcgcaatttttgggatctgttttggaagtcatatgcacacattgaaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnctttctgggcggggttttaagttgatttatacaggtttagaaagttcaaacacat
gi|1 : gaaaatttgacgaagttataagcagaatcaaaggagatattagcgaaaaactcggaaccacacctgaacggatttttgaaaaagtcggttctagcgccaaatcgctgtgacgtcacgtcgttatatcgccatcttgatgagagaaagcgtgtagatcagctgataatttcgcatatttatatcattgtcttttgttttggtgtctacatgctatatggtattttatttagtcgtgatcgttgaagttttcagtcgtagtattcgtgatcggcattgtaaatacgtaatatacttttgatttgattcgatgttgaaatgtacttctttgggagttacacccaaatacttaacattcctcatagccattgagaatttttccagccttgtgaacatacatacaagacagtgaccgaagcctggtgataatttgcttcactacatattttaatcattaaaattatttcatatttacgtatttttctcggagtgaaaccatactgcctctgagagatcgatgaacagatgaaatttctgttgtagattatatttttatttcatttcatgtaagtacagacatgtataatattcagagttgcaaattaccactcacatatataatgagtaattttatttgtgggcgaccaaattgtgaaaatcttctcgccaacatggcgagtaaaacttagtttttaaaaatccgctcgttttttgacgctgcataacgtttgtttgttgccgaatgtaattcacatttttatggtgcgtattaattagtataattttgaaatgttttctctcgagtgaagctcaacttagtattttaacatgtagcatacgtatagacctatagggaatgtcaatctccaggaaaattactgcaggaatgtaaaattgttgaaaatgtgatacataaaaatgtatatatataaccttttcatgtaacagccaattaaaattaatcagatcgaatatttatattgtataccatgaaagtgtcAGAAATTGCA-GTTT-AGTGAAAG-GTTTATGAAAAT--GCCATAAAA----AAAAATC-AATATACTGAAAGTTTTATGAATT-A-TGATT----TT--TGAA-ATTCTGGAATA--AT-A-TTTCTTTTGC-AAAC-AAATAA-TTATATAATTGTCACGATAGATACTAGAATGagtttagtgaaaggtttatgaaaatgccataaaaaaaaatcaatatactgaaagttttatgaattatgatttttgaaattctggaataatatttcttttgcaaacaaataattatataattgtcacgatagatactagaatgttgcaagtatatgcgcatgtattttaaccgtacacttgtcacttagtgttttgcaatatacaatttaaaaatttccatgcagggaggtagaggaacactttctgcctgctgcacgatttccataggtctcagcatatgtggttacttttaacttttgttttgcagtaagcataacgtgtattttatagtaccatctaaatagagcgaaatttcgcaatttttgggatctgttttggaagtcatatgcacacattgaaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnctttctgggcggggttttaagttgatttatacaggtttagaaagttcaaacacat
gi|10 : gaaaatttgacgaagttataagcagaatcaaaggagatattagcgaaaaactcggaaccacacctgaacggatttttgaaaaagtcggttctagcgccaaatcgctgtgacgtcacgtcgttatatcgccatcttgatgagagaaagcgtgtagatcagctgataatttcgcatatttatatcattgtcttttgttttggtgtctacatgctatatggtattttatttagtcgtgatcgttgaagttttcagtcgtagtattcgtgatcggcattgtaaatacgtaatatacttttgatttgattcgatgttgaaatgtacttctttgggagttacacccaaatacttaacattcctcatagccattgagaatttttccagccttgtgaacatacatacaagacagtgaccgaagcctggtgataatttgcttcactacatattttaatcattaaaattatttcatatttacgtatttttctcggagtgaaaccatactgcctctgagagatcgatgaacagatgaaatttctgttgtagattatatttttatttcatttcatgtaagtacagacatgtataatattcagagttgcaaattaccactcacatatataatgagtaattttatttgtgggcgaccaaattgtgaaaatcttctcgccaacatggcgagtaaaacttagtttttaaaaatccgctcgttttttgacgctgcataacgtttgtttgttgccgaatgtaattcacatttttatggtgcgtattaattagtataattttgaaatgttttctctcgagtgaagctcaacttagtattttaacatgtagcatacgtatagacctatagggaatgtcaatctccaggaaaattactgcaggaatgtaaaattgttgaaaatgtgatacataaaaatgtatatatataaccttttcatgtaacagccaattaaaattaatcagatcgaatatttatattgtataccatgaaagtgtcttgcttacgtgtgactataaacgaagtcgggttAAGGGTCT-ATGCAATGCAA-TTCGA-TTTTCC----AGCAGAGTAAA-CA--CCTAATCCAATTAAAA---AT--A-T-ACTGAAAATTT-GA---CGAAGTTAT-AAGCAGAATC-AACGGAGATATTA-GCGAAAAAC----TCGAAAC--CACAC-CTGAACGGAT-TTTTGA--AAAAGTC--GGTTCT-AGC-GCCA--A-ATCGC-TG-TGACGT-CAC-GTC-GTGTATATCGCCATCTTG-GA--TAGAGAGAAA----GCG-TGTA--GA-TCAGCTGATAAT-TTTCGCGATA-TTTATATCATTTGTCTTTT-GATT-T---GGTGCATTTACA--TGCT-A--TAGGT--ATTTTT-A-TTTAGTCGTGATCGTTGAAAGTTTT--CAGTCGTAGCTATAGTA--------TTCGTGAT-CGGCATTG-TA-AATA-------------T------CA----T-A--------------CG--------------G-T---AATA------TATA-TTGG-TTTGATCGA-TGT--TG-AATGTACTTCTTTGGGAG-TTACAC-CCATA-T--A--CTTAACATTC-CCCAT---AACCAT-G-AGAATTTTCCCAGCCTTGTG--AACATAC-ttgcaagtatatgcgcatgtattttaaccgtacacttgtcacttagtgttttgcaatatacaatttaaaaatttccatgcagggaggtagaggaacactttctgcctgctgcacgatttccataggtctcagcatatgtggttacttttaacttttgttttgcagtaagcataacgtgtattttatagtaccatctaaatagagcgaaatttcgcaatttttgggatctgttttggaagtcatatgcacacattgaaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnctttctgggcggggttttaagttgatttatacaggtttagaaagttcaaacacat
gi|11 : TGAACGGAT-TTTTGA--AAAAGTC--GGTTCTA-GT-GCCA--A-ATCGC-TG-TGACGT-CAC-GTT-GTGTATATCGCCATCTTG-AA--TAGAGAGAAA----GCG-TGTA--AA-TCAGCTGATAAT-TTTCGCGATA-TTTATAT--------TTAT-GTTT-T---GGTGCATTTACA--TGCT-A--TAGGT--A-TTTTTA-TTTAGTCGTGATCGTTGAAAGTTTT--CAGTCG------TAGTA--------TTCGTGAT-CGGCATTT-TA-AATAC------------CGTAATATA----T-AT-------------TGATTTGATCGAT---G-TTG-AATG------TAC--TTCT-TTGG---GA-TGCG-TGGAA-----------AAAAG-TTACAC-CCATA-T--A--CTTAACATTC-CCCAT---AGCCATTG-AGAATTTTTCCAGCCTTGTG--AACATAC-A--TACATGGCAGTGG-CTGAAACCTG-GT-GATAAT--GTGCTTTA--C--TACA---TATTTTAAT----CAT-TATAAT-TATT-TC-A--TATTTACGTATTTT--T-CT-C-GGACTG-AAACC--ATACTGCA-----TCT--GAGA----G-A
gi|12 : AAGGGTCT-ATGCAATGCAA-TTCGA-TTTTCC----AGCAGAGTAAA-CA--CCTAATCCAATTAAAAC-TAT--A----CTGAAAATTT-GA---CGAAGTTAT-AAGCAGAATC-AACGGAGATATTA-GCGAAAAAC----TCGAAAC--CACAC-CTGAACGGAT-TTTTGA--AAAAGTC--GGTTCTA-GC-GCCA--A-ATCGC-TG-TGACGT-CAC-GTC-GTGTATATTGCCATCTTG-GA--TAGAAAGAAA----GCG-TGTA--GA-TCAGCTGATAAT-TTTCGCGATA-TTTATATCAT-----TTGT--------------------------CT-T-----------TTGT---TTTGGTCGTGATCGTTGAAATTTTC--CAGTCG------TAGTA--------TTCGTGAT-CTGCATTG-TATAA-----------------------A----A-AC-------------CG----------TACGG-T---AATA------TAT--
gi|13 : aGCGAAT-----AAA-CTT-------AC---CGT----TTTT-AAAA-ATCGCGC-C-C-G-T--CTGTTGA-CGGCTCC--ATT-A-CGTT----------------------------------AATA-ACATTCT-T-TTTCCA-GAAAT-TTTTAATGCG-A-----AA---AA-------G-----TGTGC-GTATTTACAT-------TGTATGT--ACAGAAGAATTTG-AAGTCGTTTCTTCTTC--GTAAAGCTCGTGTT-AGAA-TT-G-TTACGTGG-GAAattgatttgat
gi|13 : AGTTCGGGTTAGAAATTGCTTAGCCATGCCAATAA--AAAAAAAAAAAAAAAAAATC--CA-TGTT-AGTGGAAattagtcagtaacttcgagaaagtttggtgtgtgtatggagcagttcgggttagaaattgcttagccatgccaataaaaaaaaaaaaaaaaaaaatccatgttagtggaatccttgaatccacgttagagtggtttttaatggtatttttct
gi|14 : gcgaataaacttaccgtttttaaaaatcgcgcccgtctgttgacggctccattacgttaataacattctttttccagaaatttttaatgcgaaaaagtgtgcgtatttacattgtatgtacagaagaatttgaagtcgtttcttcttcgtaaagctcgtgttagaattgttacgtgggaaattagtcagtaacttcgagaaagtttggtgtgtgtatggagcAAGGGTCT-ATGCA-TGCAA-TTCGA-TTTTTA----AGCATAGTAAA-CA--CCTATTCCAATAAAAAC-TAT--A----CTGAAAATTT-GA---CGAAG------------ATC-AACGGAGATATTA-GCGAAAAAC----TCGAAAC--TACAC-CTGAACAGAT-ATTTGA--AAAAGTC--GGTTCT-AGC-GCCA--A-ATCGC-TG-TGACGT-CAC-GTC-GTGTATATCGCCATCTTG-GA--TAGAGAGAAA----GCG-TGTA--GA-TCAGTTGAT-ATATTTTGCGATA-TTTATATCATTTGT-tccttgaatccacgttagagtggtttttaatggtatttttct
gi|15 : aTCT-ATGCAATGCAAATTCGA-TTTTCCA---GGCAGAGTAAA-CA--CCTAATCCAATTTAAA--CAT--A-TATCTGAAAATTTGGA---CG-ACATAT-AAGCAGAATC-AATGGAGATATTA-GCGAAAAACGCGACCGAAAC--CACAT-CTGAACGGA--TTTTGA--AAAAGTC--GGTTTCTAGC-GCCA--A-ATCGCTTGTTGACGT-CAC-GTCTGTGTATATCGCCATCTTGAGA--TAGAGAattttg
gi|16 : TTAAAA--AATCGA-T-CCTGAAAATTT-TATTGCGATCGTAC-A---TGTACT-ATTGGAGATATTT-GGGGTAA------TCACAATTTCACAC-CTGAAC-GAC-TTTTAA--ACCGGGC--TGTTTT-GGT-GCGATTA-AT-GT-CG-TGACGT-CAC-GAG-GTCAACATCGCC
gi|17 : taaaagatatctgcaaccccggtcatttgttttaaatttggagggttacagt-ATGCAGGGTATGTTGCA-AATAACCAGTTGCCCACTC-T--------TG--------CAAATGA---GAATA----TATTT-TGTG-TGC-A-ACCAA-AATATGAAAATCCTAT-TGCCAAC--AT-GGTGTGT-----AAAATTT-------AC---CGTAACTTTTC-CAAA-ATC-CAC-T-T-G-C--AGTTTAA-CA-TTAC--ATT---TGTTT-
gi|18 : AGGGT----TGCA-AATAACCA----------C-T--------CG--------CAAATGC---GAGTAATTTTATTTGTGG---GC-G-ACCAG-TTTATGAAAGTTCTCT-CGCCCAC--AA-GGCGAGT-----AAAAATTTATCGTAAC---T------TTTC-TGGA-ATT-CGT-T-C-A-C--AGTTTGA-agaaggtttcaacttctga
gi|2 : AAAGGTCT-GTGCAATGCAA-TGCTA-TTTTTT----GATAAAATAAAATA--TCTACTCAAA--AAAAT-GAT--G-T-CCTGAAAATTT-GA---CGAAGATAC-TGACTGAATT-AACAGAGATATTACGCGAAAAAC----TC-CAAT--CACAC-CTGAACGTAT-TTTTGA--AAAAGCC--GGGTTTAAGC-GCCA--A-ATCGC-TG-TGACGT-CAC-CGC-ATGTTTTGAGCCATATCG-AAAGTAGAAAAACA----GTA-CGAAT-GA-GCAGTTGA----ATTTCGCT-TAGTTTGAATTGTTTGT-TTGT-ATTT-TC--AACGTATTTAAA--TGTT-T--AAGAT--A-TTAA-A-TTT----GTGATCGTTGAAAGTTTT--CAGTCG------TAGTA--------TT-GTGAT-CGGCACTG-TA-AAT--------------T------TA----T-AC-------------CG----------T---G-T---ATTG------TAT--TTCT-TTC----GA-CGTG-TG-AG-----------AAAAG-TTGCAC-TTATA-T--C--CATAACATTC-ACTAG---AGCCATGG-AGAA-TTTTCCAGCATTGTG--AACATAC-AA-TATAAGGCAGTGA-CTGAACCCTG-GT-TATAAT--TTGATTTA--C--TAC----------------------ATAAT-TATT-TC-ATGCATTTACGTATTTT--T-CT-C-CGACTG-AAA-C--ATATTGCC-----TCT--GAGA----G-AT----GAA--CGGATGAAAT--TTCT-------G-AC---T-ATACTTT-TATTTTA-TT-TA-CT-GTAGGTACAG--------------AC----TG----A-ATTCAGGGT----TGCA-AATAACCA----------C-T--------CG--------CATATGC---GAGTAA-TTTATTTGTGGG-CGCGG-ACCAA-ATTGTGAAAATCCTCT-CCGCCAC--AT-GGCGAAT------AAACTT-------AC---C------TTTT-AAAA-ATC-CGC-C-C-G-T--CGTTTGA-CG-CTGC--ATC-A-CA--------------------------G-T-------AATACACATTTT-TATTTCCA-GAAAT------------------AA---GT-------G-----TGTGC-GTATTTACATTGTACAGTGTATGT--AC-GAAT--TTTG-AA-TCGTTTTCTC-TC--GT-AAGCTCGTGTTAAGAATTT-G-TTACGTGT-GAATATTTAACGAAGT-CGGGTTAGAAATTGCT-------ACCAATGC-------AAAAAAAAAAAAAAT--CA-GTTT-AGTGAAAG-ATTTATGAAAAT--GCCAC---C----AAAAATC-GTTTTACTGAGAGTTTTATG-ACT-ATTGATTAGGCCTAATGAA-ATTTTGG-ATAATAT-ATTTTCTTTTGCAAAAC-AAATAA-CTATATAATTGTCGCGATAGCTACC-GAACGatcaacttttacttgcactttcg
gi|21 : tAGGATATCATGCAATGAAA-TGCGATTTTTTT----GGTAGAATAAA-CA--TCTAT--CAA--GAAATAAAC--ACT-TCCGAAAAATT-Ga
gi|22 : TTCAGGGT----TGCA-AATAACCA----------C-T--------CGTCCACTTGCATATGC---GAGTAATTTTATTTGT
gi|23 : ct--------A-----AA---GT-------G------GTGC-GTATTTACATT-----GT--ATGT--ACAGAAT--TTTG-AA-TCG
gi|24 : gcgaaTGCAA-TTCGA-TTTTCC----AGCAGAGTAAA-CA--CCTAATCCAAT
gi|25 : AAGGGTCT-ATGCAATGCAA-TTCGA-TT
gi|3 : taAAGGGTCT-ATGCAATGAAA-TGCGA-TTTTTTTTTTGGTAGAATAAA-CA--TCTACTCAAAT--AAAT-AAT--G-T-CCTGAAAATTTTGA---CGAAGATAC-TGGCTGAATT-AACAGAGATATTA-GCGAAAAAC----TCCAA-T--TATACACTGAAAGTAT-TTTTGA--AATAGTC--GGAT-TAAGCCGC----A-ATCGC-TG-TGACGT-CAC-A-----------CAC---------A--TAAACAGCAA----G---TACA--GA-TCAACAGTTGG-ATGTCGCTTTG-TTTGAATTGTTTGT-TTGTAGTTT-T---AACGTACT---A--T----T--AA----------A-A-TTTAGT---GATCGTTGAA-GTTTT--CAGTCG------TAGAA--------TTGGTGAT-CG-CATTG-TA-AATACGCGTGATATATAT------TAGATTTGAT-------------CGAA--------T---G-TTG-AATG------TAC--TTCT-TTGG---GA-CGCG-TG--G-----------AAAAGATTACAC-CCATA-T--A--CTTAACATTC-CC-AT---AGCTGT-G-ATAGTTTTTCCAGTCTTGTG--AACATAC-A--TACAAGGCAGTGGGCTGAAGCCTG-GT-GATAAT--TTGCTTTA--C--TGCAATATATTTTAAT----CAT-TATGAT-TATT-TC-AT--ATTTA-GTATTTT--T-CT-C-GGACTG-AAACC--ATACTGCC-----TCT--GAGAGATCG-AT----GAA--CAGATGAAAT--TTCTGTT-GTAGAAA---T-ATACTTT-TATTTTA-TT-TA-CT-GTAGGT--AG--------------ACA---TA----ATATTCAGGGT----TGCA-AATAA-CA----------CAT--------CT--------AAT-------GAGT-ATTTTATTTGTGA---GT-G-ACCAA-ATTGTGAAAAT-CTCT-CGCTCACATAT-GGCGAGT------AAACTT-------AC---T------TTTT-AAAAGATC-CGCATGC-GTT--CTTTTGA-CG-CTGC--A-T-A-CGTTTGTTGCCGAG----T---------G-T-------AAT-CATATTTT-TATTTCGA-GAAAT-TTT--------AATGTGAA---GT-------G------GTGC-GTATCAACAT-------TGTATGT--ACAGAAT--TTTG-AA-T--TTTTCTC-GA--GTGAAGCTC
gi|4 : taGGGT----TGCA-AATAACCA----------C-T--------CG--------C-----C------TAATTT-ATTTTTT-----C----CCAA-ATT-TGAAAATCCTCT-AGTCCAC--ATTGGCGAGTTGCCTAAAACTT---------------------TT-CAAA-ATC-GGG-T-C-G-T--GGTTTCA-CGGCTGCCAATT-AACGTTT-T-----------TTTGCCGAATG-T-------AATACACATTTC-C--CCCCAAGAAAT-TTC--------A-----CAT--GT-------GAAAAATGTGCCGTATTATCATT-----GT--ATGT--GCAGAAT--TTTT-AA-CTGTTTTTCC-TCAAGTGGAa
gi|4 : cACGTGC-GAA-ATATACCGAAGT-CGGGTTAGAAAATTCT-------ACCCCC-C--AAAAA--------------T--CA-GTTTTAGTGAAAG-GTTTATGAAataatcagagacgtacataatattatagtacacacataattatacatgtatagcgaaagtcgatctcttagaaaattactgcaggaacgtaaaattgttgcaaatgtgtacttaaagatagatctataaatcaaaacttattttgtaatagtaaattaaattaatcagattgaatctttatattgtatgcatatgccgtttaattgtcttgcgccacgtgcgaaatataccgaagtcgggttagaaaattctaccccccaaaaatcagttttagtgaaaggtttatgaattatgattaatgaaattttggaattaatctttcttttgccaaagaaataatttatttaattgttgcgatatactagtatacgagaaggtggccgatcacatgcgcatctgtactagctcatgatctttccagctgattccatatcggaggtagaggaaaacttttctgcctgctgcacgattttcacgggtctcagcatatgcggggttacttttaacctttgttgcagtaagtgtaccgtnnnnnnnnnnnnnnnnnnnnnnnnnatcaaaatgt
gi|4 : cgggttgcaaataaccactcgcctaatttattttttcccaaatttgaaaatcctctagtccacattggcgagttgcctaaaacttttcaaaatcgggtcgtggtttcacggctgccaattaacgtttttttgccgaatgtaatacacatttccccccaagaaatttcacatgtgaaaaatgtgccgtattatcattgtatgtgcagaatttttaactgtttttcctcaagtggaataatcagagacgtacataatattatagtacacacataattatacatgtatagcgaaagtcgatctcttagaaaattactgcaggaacgtaaaattgttgcaaatgtgtacttaaagatagatctataaatcaaaacttattttgtaatagtaaattaaattaatcagattgaatctttatattgtatgcatatgccgtttaattgtcttgcgccG-GGTTA-GAAAAT--TCTAC---CCCCCAAAAATCAGTTTTAGTGAAAGGTTTATGAATT-A-TGA------TTAATGAA-ATTTTGGAATTA-AT-C-TTTCTTTTGCCAAAG-AAATAATTTATTTAATTGTTGCGATAttatgattaatgaaattttggaattaatctttcttttgccaaagaaataatttatttaattgttgcgatatactagtatacgagaaggtggccgatcacatgcgcatctgtactagctcatgatctttccagctgattccatatcggaggtagaggaaaacttttctgcctgctgcacgattttcacgggtctcagcatatgcggggttacttttaacctttgttgcagtaagtgtaccgtnnnnnnnnnnnnnnnnnnnnnnnnnatcaaaatgt
gi|5 : cgggttgcaaataaccactcgcctaatttattttttcccaaatttgaaaatcctctagtccacattggcgagttgcctaaaacttttcaaaatcgggtcgtggtttcacggctgccaattaacgtttttttgccgaatgtaatacacatttccccccaagaaatttcacatgtgaaaaatgtgccgtattatcattgtatgtgcagaatttttaactgtttttcctcaagtggaataatcagagacgtacataatattatagtacacacataattatacatgtatagcgaaagtcgatctcttagaaaattactgcaggaacgtaaaattgttgcaaatgtgtacttaaagatagatctataaatcaaaacttattttgtaatagtaaattaaattaatcagattgaatctttatattgtatgcatatgccgtttaattgtcttgcgccacgtgcgaaatataccgaagtcC-ATGTATTGTCACATTTTATT-CTTN-NNNNNN-NNNNN--NNNNNNNN-----NNN--NNGA----A-TT----GAA--CGGATGAAAT--TTCTG--------AC---T-AT-CTTTATATTTTA-TT-TATCT-GTAGGTA-AG--------------AC----TG----A-ATT-AGGGT----TGCACAATAAC-A----------C-T--------CGG-------CAAATG----GAGTAATTTATTTTGTGGG-GGC-G-GACAATAATGTGAAAATCCTCTTCGCC-AC--AT-GG-GAAT-----AAA-TTT-------AC---C------TTTT-AAAA-ATC-CGC---C-G-T--CGTTTGA--G--TCC--ATT-A-AA--------------------------G-T-------CA-ATACATGTT-TATTT-CA-GAATT-TTTTATGCGA-A-----AA---GT-------G------GTGC-GTATTTAC-TT-----G-GCATGT--ACAAGAT--TTTGAAA-TCGTTTTCTC-TC--GTAAAGCTCGTGTTAAGAATTTAG-TTACGTGT-GAATATTTAACG-AGT-CGGGTAAG-AATTG-T-------ACCAATGCAAAAAAAAAAAAAAAAAAAAAT--CAGGTTT-AGTGACAGAATTTATGAAAATTGGCCAC---C-----AAAATC-GTTTTA-TGAGAGTTTTATGAGTTAA-TGATTAGG-CCTATGAAGATTTT-GAAT-ATATAA-TTTCTTTTGCAAAACAAAATAA-ATATATAATTGTCGCGATAGCTACC-GAAtactagtatacgagaaggtggccgatcacatgcgcatctgtactagctcatgatctttccagctgattccatatcggaggtagaggaaaacttttctgcctgctgcacgattttcacgggtctcagcatatgcggggttacttttaacctttgttgcagtaagtgtaccgtnnnnnnnnnnnnnnnnnnnnnnnnnatcaaaatgt
gi|6 : gacaattcgctgcaataataaaAAAGGTCT-GTGCAATGCAA-TGCTA-TTTTTT----GATAGAATAAA-CAATCATAACTCAAAGTAATT-GAT--G-T-C-TGAAAATTT-GA---CGAA-ATACTAGGCTGAATTTAACAGAGATATTA-GC-AAAATC----TCCAAAT--CACAC-CTGAAACGTTATTTTGACTAATAGTCCTGGTTC--AGTTGCCA--ATATCGC-TG-TGACGTTCACCGTC-ATGTTTGAGGCCATTATC-GA--AAGAGAAAAAACAAGCGACGTAATGAGTCAGTTGA----ATTTTGCGAC----TAGATAGTT-GT-TTGTTGTTT-TTTCAACGTATTTATAGATGTT-T--AAGAT--A-CTAA-AATTTAGT---GATCGTAGACAGTTTTTTCAGTCG------TAGTACATGTATTTTGGTGAT-CGCAATTG-TA-AAT---------------------TA----T-AC-------------CG----------T---G-T---A---------TATTGTTCTATTCG---GA-CGTGATG-AA-----------AAAAG--TGCACATTATA-T--C--CATAACATTT-CACACTGAGGCCATTG-GAATTTTTTCCAGCATTGTGA-AACATAA-AATTATAAGG-AATGG-CTGAACACTGTGT-TATTAC--TTGATTTAACT--TAC----TATGTTGATAACACATATATAAT-TATT-TCTCTGTATTTACGTATTTT--TCCT-C-CGACTGTAAGCC--ATACTGCC-----TCT--GAGA----G-AT----GAACGCGAATGAAAT--TTCT-------G-AC---T-ATATTTT-TATTTTATTT-TA-CT-GTAGgaaaggttgcagtacctatttttacccggatttcaaccgtgccttgtcatttgtaggcctgaggttttcgaccacggtctacatag
gi|7 : TTAAA--GGCC-TCTAAGATTAA-TTAA-AATTTAGT---GATCGTTGAAAGTTTT--CAGTCG------TAGTA--------TTTGTGATCCGGCATTGCTA-AA-AT------------T------TA----T-AC-------------CG----------T---GAT---ATTG------TAT--TGAT-TT-----GATCGTGCTG-AG-----------AAAAG-TTGCACATTATA-TTCC--CATAACATTCACCCAG---AGCCATGATAGAATTTTTCCA-CCATGTGAAAACATACAAA-TATAGGGCAGTGG-CT-AACCCTG-TTATATACTCCTTGATTCA--CCATACA---TATTTTAAA----CAT-TATAATCTATTCTC-ATGTATTTACGTATTTT--T-CTACGCGACTG-AAACC--ATACTGCCACAAATCT--GAGA----GAAT----GAA--CGAATGAAATTGTTCT--T----G-AC---TAATACTTT-TATTTTA-TTCTA-CTAGTAGGTACAGCCTCCGGAGTAGGTACAGACTGA---A-ATTCAGGGT----TGCA-AATAACCA----------CTT--------CG--------CATATGC---GAGTAATTTTATTT-TGGGCCGC-GAACCAA-ATTGTGAAAATCCTCT-CGCCCAC--AT-GGCGAAT-----AAAACTT-------ACCCTC------TTTTAAAAA-ATC-CGC-C-CGG-TTGGGTTTGATCG-CTGC--ATTCA-CA--------------------------GCT-------AATACACATTTTCTATTTCCA-GAAATCTTT--------A-----AATCTGCAAAACAAG-----TGTGC-GTATTTACA-------ATGTATGCTAACAGAAT--Tt
gi|8 : ATTGTTTGT-TTGT-ATTTCT---AACATATTTAAA--TGTT-TT-AAGAT--A-TTAA-AATTTAGT---GATCGTTGAAAGTTTT--CAGTTG------TAGTA--------TTCGTGAT-CGGCATTG-TA-AAT--------------T------TA----T-AT-------------CG----------T---GAT---ATTGGTTTGATAT--TTCT-TTCG---GA-CGTG-TG-AG-----------AAAAG-TTACACATTATAAT--ATCCATAACATTC----------ACCATGG-AGAATGTTTCCAGCATTGTG--AACATAC-AA--ATAAGGCAGTGG-CTGAAGCCTG-GT-TATAAT--TTGCTTTA--C--TACA---TATTTTAAA----CAT-TATAAT-TATT-TC-ATGTATTTACGTATTTT--T-CT-C-CGACTG-AAACCATATACTGCC-----TCTGCGAGATC--G-AT----GAA--GGGATGGAAT--TTCTGAT-GTAG-ACTATT-ATACTTT-TATTTTA-TA-TT-CT-GTAGGTACAG--------------AC----TT----A-ATTCAGGGT----TGCA-AATAACCA----------C-TCGGCCACACG--------CATATGC---GAATAATTTTATTTTTGG---GC-G-ACCAA-ATTGTGAAAATCCTCT-CATCCAC--AT-GGCGTGT-----AAAACTT-------AC---C------TTTT--AAA-ACC-CGC-T-C-G-T--GGTTTGA-CG-CTGC--ATT-A-CGCTTGT-----------T---------G-CCAAATGAAATACACAATTT-TATTTCCA-GAAAT-TTTTAATGTGAA-----AA---GT-------G------GTGC-GTATTTACAT-------TGTATGT--ACAGTAT--TTTG-AA-CCGTTg
gi|9 : AAAAAAGAAAT--CT-GTTT-AGTGAAAG-GTT-AT--AAAT--GCCAC---C----AATAATC-GATTTACTGAAAATTTCATGAATT-A-TTAAT-GA-TTAATGAA---TTTGGAATAA-AT-A-TTTC-TTTGCTAAAC-AGAT-A-TTTTATAATTGTCGCGATAGATA-C-GAA
blockSeqs : C A T TTTT A AT A TTA TAA CGATC G TTG GT TAG A T C GCGA G TT A A CT CT TA C TT T T T T C T AG AG ACAA A AT G TAAT GA G C T C AG C TTCAAC C GA TCTAAGATTAATTAAAA CGT A TT TAGCTA CATGTATT C C C T TACGCGTGATATATATTAGATTTGATCGAATGTTG A GTTTGA TG A TGATC TC A AATGTACTTCTTT A A A TCC T A C CTGA T T AA A AT G A T AT CC ACT AATA TAACA A C C T G AT C T GC T AT ACAAA GC GATC A . CG TG GTTGTA A TAT A A T C T A C CCTCCGGAGTAGGTACAGACTGAA ATGT C GTTGCCCACTCTTG A A G GGCC GG T T A AT T TGCCTA TATCGTAACT AA G G ATG G T TGG T G CA AA TTTTTTTGCCGAATGT C A A CTTTAAATCTGCAAAACAAGT C TGTACAGTG TA AA A G T AA A A T GC . TT A T . GCAAA A . G T A TG CCCCCA A T C A T TTAGGC A GA AAT AT A A T C C .
blockSeqs : . . . A . . T TAA CT ATAT T . GT AA A . . . G . . . . . AA T . . . . . . . G . . . T . TAAT GA . C T . TG . CAAC C . TTAAGATATTAAAA CGT A . . . C . . . TACCGTAATATATATTGATTTGATCGATGTTG A . A . GG T C GAA . A . ATC T . C T G . A . A . C . G . CCA A T . . . . G . . A G . . . . TC . . . . GATGTA . . . . . . . . C ACATAAT . . CTCGTCCACTTG A C G TGT GA . . C . . A ACCGTAACT A . . C . . C . G . CA TTTGTTGCCGAGTGT . A . TTTTAATGCGAAAAAGT . TGT . . . . . . G A T AG . AT A . . GC A . . . . . CA . T G . . TTAGG A A TA AA C . . C C .
blockSeqs : . . . . . . A TTT CT ACTT . . CA AA A . . . G . . . . . AA . . . . . . . . A . . . . . TAAT GA . C T . G . GGT A . ATAGGTATTTTTA CGT A . . . C . . . ATTTATACCGTGAT A . . . GG T . AG . A . A A . T T T . . . A . G . T . C A T . . . . G . . . C . . . . . . . . . G . . . . . . . . C ACTGA . . CTCGGCCACACG T C G GGC A . . C . . A ACCCTC C . . T . . A . . . A CTTGTTGCCAAATGA . A . TTTTAATGTGAAAAGTG . TGT . . . . . . G . . G . TT . . . CA . . . . . . CA . T C . . ATGA T A AT C A . . A . .
blockSeqs : . . . . . . C TTA TG GTC . . CG AA T . . . G . . . . . A . . . . . . . . G . . . . . TATA GA . T T . G . GGT T . ATAGGTATTTTTA GT A . . . G . . . TTTATATCGTGAT T . . . CG C . AA . . . A T . C G G . . . A . C . G . C A A . . . . G . . . G . . . . . . . . . T . . . . . . . . . ACTGA . . CATCT T C G GGG G . . C . . A ACCGT T . . T . . A . . . A GCT . A . TTCACATGTGAAAAAT . TGG . . . . . . A G . A . . . . . . C . A . . . . A . AA A T . .
blockSeqs : . . . . . . T AGT TA GTC . . GA TG T . . . A . . . . . A . . . . . . . . G . . . . . TGGA TT . T T . A . AAC A . TAAGATACTAAAA . A . . . G . . . AAACCGTACGGT A . . . CG C . AG . . . C A . C T G . . . . . C . T . C . A . . . . G . . . N . . . . . . . . . . . . . . . . . . . ACTTA . . CTCGG T C T G G . . C . . A ACC A . . C . . C . . . A TT . A . TTTTATGCGAAAAGTG . ATG . . . . . . . . . . . .
blockSeqs : . . . . . . A A TG GTC . . GA TG T . . . C . . . . . A . . . . . . . . A . . . . . A GA . A . . A . AAC A . TAAGATATTAAA . A . . . T . . . TTTATACCGTGT T . . . C C . AG . . . A A . . G . . . . . . G . T . C . . . . . . . . . . C . . . . . . . . . . . . . . . . . . . . CTTCG A C G A G . . C . . A ACT A . . T . . C . . . A GT . . . TTTAATGTGAAGTG . TG . . . .
blockSeqs : . . . . . . C G C A . . G A T . . . C . . . . . A . . . . . . . . G . . . . . A T . T . . . . . . . TTTGT . A . . . C . . . TATCATACGGT T . . . . C . G . . . C A . . . . . . . . . . . . C . . . . . . . . CTCG T C T G G . . C . . A ACC C . . C . . G . . . A GT . . . AAGTGT . TG . . . .
blockSeqs : . . . . . . A T A A . . A . . . . . . . . . . . G . . . . . . . . . . . . . . . TAAAA . . . . . . . . . TTATACCGTGT . . . . . CTCG T . . . . . . . . . . ACC A . . T . . C . . . . . TG . .
blockSeqs : . . . . . . A . . . . . . . . . . CTCG . . . . . . . . . . . G .
blockSeqCons : CG* G* GA GGC*** GT* C* AG************ A* **** GTGTA** ACTGA*********************** CTCGG************************** C*** GG** G** TGCGT******************************* TTTTAATGCGAAAAGTG********************** ** G** ** CA******* TGG*** AA* A**
originalCons : NAAGGGTCT-ATGCAATGCAA-TTCGA-TTTTCC----GGCAGAGTAAA-CA--CCTANTCCAATTAAAAT-NAT--A-T-CCTGAAAATTT-GA---CGAAGNTAC-AGGCNGAATC-AACGGAGATATTA-GCGAAAAAC----TCGAAAC--CACAC-CTGAACGGAT-TTTTGA--AAAAGTC--GGTTCTAAGC-GCCA--A-ATCGC-TG-TGACGT-CAC-GTC-GTGTATATCGCCATCTTG-GA--TAGAGAGAAA----GCG-TGTA--GA-TCAGCTGATAATATTTCGCGATA-TTTATATCGTTTGT-TTGT-GTTT-T---GACGTATTTANA--TGCT-T--AAGGT--A-TTNN-A-TTTAGTCGTGATCGTTGAAAGTTTT--CAGTCG------TAGTA--------TTCGTGAT-CGGCATTG-TA-AATAC------------T------TA----T-AC-------------CG----------T---G-T---AATG------TAT--TTCT-TTCG---GA-CGTG-TG-AG-----------AAAAG-TTACACACCATA-T--A--CNTAACATTC-CCCAT---AGCCATNG-AGAATTTTTCCAGCCTTGTG--AACATAC-AA-TACAAGGCAGTGG-CTGAANCCTG-GT-TATAAT--TTGCTTTA--C--TACA---TATTTTAAT----CAT-TATAAT-TATT-TC-ATGTATTTACGTATTTT--T-CT-C-CGACTG-AAACC--ATACTGCC-----TCT--GAGA----G-AT----GAA--CGGATGAAAT--TTCTG-T-GTAG-AC---T-ATACTTT-TATTTTA-TT-TA-CT-GTAGGTACAG--------------ACA---TG----A-ATTCAGGGT----TGCA-AATAACCA----------C-T--------CG--------CATATGC---GAGTAATTTTATTTGTGGG-CGC-G-ACCAA-ATTGTGAAAATCCTCT-CGCCCAC--AT-GGCGAGT-----AAAACTT-------AC---C------TTTT-AAAA-ATC-CGC-T-C-G-T--NGTTTGA-CG-CTGC--ATT-A-CGTTT-T-----------T---------G-T-------AATACACATTTT-TATTTCCA-GAAAT-TTT--------A-----AA---GT-------G-----TGTGC-GTATTTACATT-----GTGTATGT--ACAGAAT--TTTG-AA-TCGTTTTCTC-TC--GTGAAGCTCGTGTTAAGAATTT-G-TTACGTGT-GAATATNTAACGAAGT-CGGGTTAGAAATTGCT-------ACCAATGC--AAAAAAAAAAAAAAAAAAAT--CA-GTTT-AGTGAAAG-GTTTATGAAAAT--GCCAC---C----AAAAATC-GTTTTACTGAAAGTTTTATGAATT-A-TGATTAGG-TTAATGAA-ATTTTGGAATAATAT-A-TTTCTTTTGCNAAAC-AAATAA-TTATATAATTGTCGCGATAGNTACC-GAACG
finalCons : NAAGGGTCT-ATGCAATGCAA-TTCGA-TTTTCC----GGCAGAGTAAA-CA--CCTANTCCAATTAAAACG-AT--A-T-CCTGAAAATTT-GA---CGAAGNTAC-AGGCNGAATC-AACGGAGATATTA-GCGAAAAAC----TCGAAAC--CACAC-CTGAACGGAT-TTTTGA--AAAAGTC--GGTTCTAAGC-GCCA--A-ATCGC-TG-TGACGT-CAC-GTC-GTGTATATCGCCATCTTGG-A--TAGAGAGAAA----GCG-TGTA--GA-TCAGCTGATAATATTTCGCGATA-TTTATATCGTTTGT-TTGT-GTTT-TGGC---GTATTTANA--TGCT-T--AAGGT--A-TTNN-A-TTTAGTGT-GATCGTTGAAAGTTTT--CAGTCG------TAGTA--------TTCGTGAT-CGGCATTG-TA-AATAC------------T------TA----T-AC-------------CG----------T---G-T---AATG------TAT--TTCT-TTCG---GAC-GTG-TGAG------------AAAAG-TTACACACCATA-T--A--CNTAACATTC-CCCAT---AGCCATNG-AGAATTTTTCCAGCCTTGTG--AACATAC-AA-TACAAGGCAGTGG-CTGAANCCTG-GT-TATAAT--TTGCTTTA--C--TACA---TATTTTAAT----CAT-TATAAT-TATT-TC-ATGTATTTACGTATTTT--T-CT-C-CGACTG-AAACC--ATACTGCC-----TCT--GAGA----G-AT----GAA--CGGATGAAAT--TTCTGTGTA--G-AC---T-ATACTTT-TATTTTA-TT-TA-CT-GTAGGTACAGACTGA-----------------------ATTCAGGGT----TGCA-AATAACCACTCGG--------------------------CATATGC---GAGTAATTTTATTTGTGGG--GCG--ACCAA-ATTGTGAAAATCCTCT-CGCCCAC--AT-GGCGAGT-----AAAACTT-------AC---C------TTTT-AAAA-ATC-CGC-T-C-G-T--NGTTTGA-CG-CTGC--ATT-A-CGTGCGT-------------------------------AATACACATTTT-TATTTCCA-GAAATTTTTAATGCGAAAAGTG----------------------GTGC-GTATTTACATT-----GTGTATGT--ACAGAAT--TTTG-AA-TCGTTTTCTC-TC--GTGAAGCTCGTGTTAAGAATTTG--TTACGTGT-GAATATNTAACGAAGT-CGGGTTAGAAATTGCT-------ACCAATGC--AAAAAAAAAAAAAAAAAAAT--CA-GTTT-AGTGAAAG-GTTTATGAAAAT--GCCACCA-------AAAATC-GTTTTACTGAAAGTTTTATGAATT-A-TGATGG---TTAATGAA-ATTTTGGAATAA-ATA--TTTCTTTTGCNAAAC-AAATAA-TTATATAATTGTCGCGATAGNTACC-GAACG
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|19 ): TAGCCGAACGAACAGGATGTCATGGCCGAGTACCTATTTAAACCCGTAGATAAAAACCGTGGGTTGCACTTGTCATTGTAGGCCGAGGTTTTCGACCCGACGGTCTAACCTCAGGTGA
Unaligned ( gi|20 ): ATAGAAGTGTATTCTCAGATTCATTTGAACTCATGAATTTGAAGTGATCATCAGAACAATTTTGATTAGTTTATTTATAA
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 1111 11111 11 111111 11 1111 11 22222 11 11111 22222222222222222222 2222 111111 11111111 0000000000000000000000000000000000000000000000000000000000000000000 111111 11 11111 1 22222222222222 2 11111 1111 1 11 1111 1111 11111 1 11111 1111 1111 5555555 111 5555555555555555555 22222 1 44444444444 1111 2222 111111 2222222222222222222 99999999999999999999999 2222222222 1111111111111 33333333 1 11 1 111 3333333 11111 11 222222222 11 111 3333333333 111 111 1
lowQualScore : 4 4 0 4 3333 4 66 1 44444 55 444444 8 777 66 999 2 4 4 9999 2 66 4 4 55 55 77 8 55 4 4 4 4 4 0 4 66 66 0000 5 11 5 55555 22 5 0 3 7 8 00 5 66666 0 4 66 11111111111111111111 1111 1 66 222222 66666666 2 4 4 4 0000000000000000000000000000000000000000000000000000000000000000000 5 222222 00 5 55555 55 0 88888888888888 5 1 5 33333 1 5 1 0000 0 5 11 3333 5 1 5 77 77 0 88888 5555 44444 5 5 5 5 5 66 5 0 55 5 66 22222 66 7777 5 2222 77 77 0000000 5 000 5 5 5 5 5 5 1111111111111111111 33333 6 1 8888 4 77777777777 1 4 0000 4 2 22 1111 666 4 4 1 66 4 000000 0 5555555555555555555 77 4 4 888 4 4 666 4 8 66 4 5 22222222222222222222222 0 111 5 5 5 1111111111 7777777777777 4 55 4 33333333 66 66 0 0 6 88 3 5 3 666 6 0 11 3 8 0 2222222 99999 3 99 6 6 6 11 666666666 8 1 5 11 8 222 2222222222 88 0 000 111 0 8 8 0 8 1 2 0
lowQualScore : . . . . .... . .. . ..... .. ...... . ... .. ... . . . .... . .. . . .. .. .. . .. . . . . . . . .. .. .... . .. . ..... .. . . . . . .. . ..... . . .. .................... .... . .. ...... ........ . . . . ................................................................... . ...... .. . ..... .. . .............. . . . ..... . . . .... . . .. .... . . . .. .. . ..... .... ..... . . . . . .. . . .. . .. ..... .. .... . .... .. .. ....... . ... . . . . . . ................... ..... . . .... . ........... . . .... . . .. .... ... . . . .. . ...... . ................... .. . . ... . . ... . . .. . . ....................... . ... . . . .......... ............. . .. . ........ .. .. . . . .. . . . ... . . .. . . . ....... ..... . .. . . . .. ......... . . . .. . ... .......... .. . ... ... . . . . . . . .
lowQualScore : 4 0 6 0 9999 4 11 0 00000 77 000000 9 888 44 333 6 4 4 4444 9 11 4 0 55 55 99 0 55 0 0 0 0 0 9 0 33 11 6666 0 99 0 88888 99 0 5 7 2 9 22 0 00000 1 1 11 66666666666666666666 7777 9 11 888888 11111111 9 4 4 4 8888888888888888888888888888888888888888888888888888888888888888888 1 888888 66 0 88888 22 0 00000000000000 0 6 0 88888 0 0 4 6666 8 0 99 7777 7 0 7 00 99 7 00000 0000 00000 7 7 7 0 6 99 0 0 88 0 99 55555 99 5555 0 1111 99 99 7777777 7 000 7 7 7 7 7 7 7777777777777777777 33333 7 4 5555 0 77777777777 2 0 2222 0 5 22 7777 222 4 4 1 11 4 888888 8 2222222222222222222 33 0 0 444 0 0 555 0 9 11 4 0 11111111111111111111111 4 666 0 1 0 9999999999 1111111111111 4 66 4 11111111 11 11 0 2 7 33 7 5 2 000 7 8 88 2 0 8 5555555 88888 2 22 7 7 7 00 888888888 0 4 0 00 0 000 0000000000 88 8 222 888 8 8 0 8 0 0 5 0
consensus : NAAGGGTCT-ATGCAATGCAA-TTCGA-TTTTCC----GGCAGAGTAAA-CA--CCTANTCCAATTA--AAACGAT--AT-CCTGAAAATTT-GA---CGAAGNTAC-AGGCNGAATC-AACGGAGATATTA-GCGAAAAAC----TCGAAAC--CACAC-CTGAACGGAT-TTTTGA--AAAAGTC--GGTTCTAAGC-GCCA--A-ATCGC-TG-TGACGT-CAC-GTC-GTGTATATCGCCATCTTG-GA--TAGAGAGAAA----GCG-TGTA--GA-TCAGCTGATAATATTTCGCGATA-TTTATATCGTTTGT-TTGT-GTTT-T---GGCGTATTTANA--TGCT-T--AAGGT--A-TTNN-A-TTTAGTCGTGATCGTTGAAAGTTTT--CAGTCG------TAGTA--------TTCGTGAT-CGGCATTG-TA-AATAC------------T------TA----T-AC-------------CG----------T---G-T---AATG------TAT--TTCT-TTCG---GA-CGTG-TG-AG-----------AAAAG-TTACACACCATA-T--A--CNTAACATTC-CCCAT---AGCCATNG-AGAATTTTTCCAGCCTTGTG--AACATAC-AA-TACAAGGCAGTGG-CTGAANCCTG-GT-TATAAT--TTGCTTTA--C--TACA---TATTTTAAT----CAT-TATAAT-TATT-TC-ATGTATTTACGTATTTT--T-CT-C-CGACTG-AAACC--ATACTGCC-----TCT--GAGA----G-AT----GAA--CGGATGAAAT--TTCTG-T-GTAG-AC---T-ATACTTT-TATTTTA-TT-TA-CT-GTAGGTA------------------CAGAC-----TG-A-ATTCAGGGT----TGCA-AATAACCACTCG---------GCATAT-GC---GAGTA-ATTTTATTTGTGGG--G-C-G-ACCAA-ATTGTGAAAATCCTCT-CGCCCAC--AT-GGCGAGT-----AAAACTT-------AC---C------TTTT-AAAA-ATC-CGC-T-C-G-T--NGTTTGA-CG-CTGC--ATT-A-CG-----T----------GC-----GTAATACACATTTT-TATTTCCA-GAA----------ATTTTTAA---TGCG-AA--AA-GTG-GTGC-GTATTTACATT-----GTGTATGT--ACAGAAT--TTTGAA-TCGTTTTCTC-TC--GTGAAGCTCGTGTTAAGAATTT-G-TTACGTGT-GAATATNTAACGAAGT-CGGGTTAGAAATTGCT-------ACCAATGC--AAAAAAAAAAAAAAAAAAAT--CA-GTTT-AGTGAAAG-GTTTATGAAAAT--GCCAC---C----AAAAATC-GTTTTACTGAAAGTTTTATGA--ATT-A-TGATGNTTA-----ATGAA-ATTTTGGAATAA-AT-A-TTTCTTTTGCNAAAC-AAATAA-TTATATAATTGTCGCGATAGNTACC-GAACG
Reference ( family-926 ) : NAAGGGTCT-ATGCAATGCAA-TTCGA-TTTTCC----GGCAGAGTAAA-CA--CCTANTCCAATTA--AAACGAT--AT-CCTGAAAATTT-GA---CGAAGNTAC-AGGCNGAATC-AACGGAGATATTA-GCGAAAAAC----TCGAAAC--CACAC-CTGAACGGAT-TTTTGA--AAAAGTC--GGTTCTAAGC-GCCA--A-ATCGC-TG-TGACGT-CAC-GTC-GTGTATATCGCCATCTTG-GA--TAGAGAGAAA----GCG-TGTA--GA-TCAGCTGATAATATTTCGCGATA-TTTATATCGTTTGT-TTGT-GTTT-T---GGCGTATTTANA--TGCT-T--AAGGT--A-TTNN-A-TTTAGT-GTGATCGTTGAAAGTTTT--CAGTCG------TAGTA--------TTCGTGAT-CGGCATTG-TA-AATAC------------T------TA----T-AC-------------CG----------T---G-T---AATG------TAT--TTCT-TTCG---GA-CGTG-TG-AG-----------AAAAG-TTACACACCATA-T--A--CNTAACATTC-CCCAT---AGCCATNG-AGAATTTTTCCAGCCTTGTG--AACATAC-AA-TACAAGGCAGTGG-CTGAANCCTG-GT-TATAAT--TTGCTTTA--C--TACA---TATTTTAAT----CAT-TATAAT-TATT-TC-ATGTATTTACGTATTTT--T-CT-C-CGACTG-AAACC--ATACTGCC-----TCT--GAGA----G-AT----GAA--CGGATGAAAT--TTCTG-T-GTAG-AC---T-ATACTTT-TATTTTA-TT-TA-CT-GTAGGTA------------------CAGAC-----TG-A-ATTCAGGGT----TGCA-AATAACCACTCG---------GCATAT-GC---GAGTA-ATTTTATTTGTGGG--G-C-G-ACCAA-ATTGTGAAAATCCTCT-CGCCCAC--AT-GGCGAGT-----AAAACTT-------AC---C------TTTT-AAAA-ATC-CGC-T-C-G-T--NGTTTGA-CG-CTGC--ATT-A-CG-----T----------GC-----GTAATACACATTTT-TATTTCCA-GAA----------ATTTTTAA---TGCG-AA--AA-GTG-GTGC-GTATTTACATT-----GTGTATGT--ACAGAAT--TTTGAA-TCGTTTTCTC-TC--GTGAAGCTCGTGTTAAGAATTT-G-TTACGTGT-GAATATNTAACGAAGT-CGGGTTAGAAATTGCT-------ACCAATGC--AAAAAAAAAAAAAAAAAAAT--CA-GTTT-AGTGAAAG-GTTTATGAAAAT--GCCAC---C----AAAAATC-GTTTTACTGAAAGTTTTATGA--ATT-A-TGATGGTTA-----ATGAA-ATTTTGGAATAA-AT-A-TTTCTTTTGCNAAAC-AAATAA-TTATATAATTGTCGCGATAGNTACC-GAACG
gi|1 : GAAAATTT-GA---CGAAGTTAT-AAGCAGAATC-AAAGGAGATATTA-GCGAAAAAC----TCGGAAC--CACAC-CTGAACGGAT-TTTTGA--AAAAGTC--GGTTCTA-GC-GCCA--A-ATCGC-TG-TGACGT-CAC-GTC-GT-TATATCGCCATCTTG--A--T-GAGAGAAA----GCG-TGTA--GA-TCAGCTGATAAT--TTCGC-ATA-TTTATATCATT-GTCTTTT-GTTT-T---GGTGT--CTACA--TGCTAT--ATGGT--A-TTTT-A-TTTAGTCGTGATCGTTGAA-GTTTT--CAGTCG------TAGTA--------TTCGTGAT-CGGCATTG-TA-AATACG-----------TAA----TA----T-ACTTTTGATTTGATTCGA---------T---G-TTGAAATG------TAC--TTCT-TTGG---GA--------------------------G-TTACAC-CCAAA-T--A--CTTAACATTC-CTCAT---AGCCATTG-AGAATTTTTCCAGCCTTGTG--AACATAC-A--TACAAGACAGTGA-CCGAAGCCTG-GT-GATAAT--TTGCTTCA--C--TACA---TATTTTAAT----CAT-TAAAAT-TATT-TC-AT--ATTTACGTATTTT--T-CT-C-GGAGTG-AAACC--ATACTGCC-----TCT--GAGA----G-ATCGATGAA--CAGATGAAAT--TTCTG-TTGTAG-AT---T-ATATTTT-TATTTCA-TT-TC-AT-GTAAGTA------------------CAGACATGTATA-ATATTCAGAGT----TGCA-AATTACCACTCA----------CATAT-ATAATGAGTA-ATTTTATTTGTGGG----C-G-ACCAA-ATTGTGAAAATCTTCT-CGCCAAC--AT-GGCGAGT-----AAAACTT-------AG---T------TTTT-AAAA-ATC-CGC-T-C-G-T--TTTTTGA-CG-CTGC--ATA-A-CG-----T----------TT-----G-----------TT-TGTTGCC--GAATGTAATTCACATTTTTA-----------------TG-GTGC-GTA-TTA-ATT-----A-GTAT--------AAT--TTTGAA-ATGTTTTCTC-TCGAGTGAAGCTCAACTT-AGTATTT---TAACATGTAGCATACGTA
gi|1 : TT-GCTTACGTGT-GACTATA-AACGAAGT-CGGGTTAGAAATTGCtagacctatagggaatgtcaatctccaggaaaattactgcaggaatgtaaaattgttgaaaatgtgatacataaaaatgtatatatataaccttttcatgtaacagccaattaaaattaatcagatcgaatatttatattgtataccatgaaagtgtcttgcttacgtgtgactataaacgaagtcgggttagaaattgcagtttagtgaaaggtttatgaaaatgccataaaaaaaaatcaatatactgaaagttttatgaattatgatttttgaaattctggaataatatttcttttgcaaacaaataattatataattgtcacgatagatactagaatgttgcaagtatatgcgcatgtattttaaccgtacacttgtcacttagtgttttgcaatatacaatttaaaaatttccatgcagggaggtagaggaacactttctgcctgctgcacgatttccataggtctcagcatatgtggttacttttaacttttgttttgcagtaagcataacgtgtattttatagtaccatctaaatagagcgaaatttcgcaatttttgggatctgttttggaagtcatatgcacacattgaaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnctttctgggcggggttttaagttgatttatacaggtttagaaagttcaaacacat
gi|1 : gaaaatttgacgaagttataagcagaatcaaaggagatattagcgaaaaactcggaaccacacctgaacggatttttgaaaaagtcggttctagcgccaaatcgctgtgacgtcacgtcgttatatcgccatcttgatgagagaaagcgtgtagatcagctgataatttcgcatatttatatcattgtcttttgttttggtgtctacatgctatatggtattttatttagtcgtgatcgttgaagttttcagtcgtagtattcgtgatcggcattgtaaatacgtaatatacttttgatttgattcgatgttgaaatgtacttctttgggagttacacccaaatacttaacattcctcatagccattgagaatttttccagccttgtgaacatacatacaagacagtgaccgaagcctggtgataatttgcttcactacatattttaatcattaaaattatttcatatttacgtatttttctcggagtgaaaccatactgcctctgagagatcgatgaacagatgaaatttctgttgtagattatatttttatttcatttcatgtaagtacagacatgtataatattcagagttgcaaattaccactcacatatataatgagtaattttatttgtgggcgaccaaattgtgaaaatcttctcgccaacatggcgagtaaaacttagtttttaaaaatccgctcgttttttgacgctgcataacgtttgtttgttgccgaatgtaattcacatttttatggtgcgtattaattagtataattttgaaatgttttctctcgagtgaagctcaacttagtattttaacatgtagcatacgtatagacctatagggaatgtcaatctccaggaaaattactgcaggaatgtaaaattgttgaaaatgtgatacataaaaatgtatatatataaccttttcatgtaacagccaattaaaattaatcagatcgaatatttatattgtataccatgaaagtgtcAGAAATTGCA-GTTT-AGTGAAAG-GTTTATGAAAAT--GCCATAAAA----AAAAATC-AATATACTGAAAGTTTTATGA--ATT-A-TGAT-TTT-------TGAA-ATTCTGGAAT-A-AT-A-TTTCTTTTGC-AAAC-AAATAA-TTATATAATTGTCACGATAGATACTAGAATGagtttagtgaaaggtttatgaaaatgccataaaaaaaaatcaatatactgaaagttttatgaattatgatttttgaaattctggaataatatttcttttgcaaacaaataattatataattgtcacgatagatactagaatgttgcaagtatatgcgcatgtattttaaccgtacacttgtcacttagtgttttgcaatatacaatttaaaaatttccatgcagggaggtagaggaacactttctgcctgctgcacgatttccataggtctcagcatatgtggttacttttaacttttgttttgcagtaagcataacgtgtattttatagtaccatctaaatagagcgaaatttcgcaatttttgggatctgttttggaagtcatatgcacacattgaaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnctttctgggcggggttttaagttgatttatacaggtttagaaagttcaaacacat
gi|10 : gaaaatttgacgaagttataagcagaatcaaaggagatattagcgaaaaactcggaaccacacctgaacggatttttgaaaaagtcggttctagcgccaaatcgctgtgacgtcacgtcgttatatcgccatcttgatgagagaaagcgtgtagatcagctgataatttcgcatatttatatcattgtcttttgttttggtgtctacatgctatatggtattttatttagtcgtgatcgttgaagttttcagtcgtagtattcgtgatcggcattgtaaatacgtaatatacttttgatttgattcgatgttgaaatgtacttctttgggagttacacccaaatacttaacattcctcatagccattgagaatttttccagccttgtgaacatacatacaagacagtgaccgaagcctggtgataatttgcttcactacatattttaatcattaaaattatttcatatttacgtatttttctcggagtgaaaccatactgcctctgagagatcgatgaacagatgaaatttctgttgtagattatatttttatttcatttcatgtaagtacagacatgtataatattcagagttgcaaattaccactcacatatataatgagtaattttatttgtgggcgaccaaattgtgaaaatcttctcgccaacatggcgagtaaaacttagtttttaaaaatccgctcgttttttgacgctgcataacgtttgtttgttgccgaatgtaattcacatttttatggtgcgtattaattagtataattttgaaatgttttctctcgagtgaagctcaacttagtattttaacatgtagcatacgtatagacctatagggaatgtcaatctccaggaaaattactgcaggaatgtaaaattgttgaaaatgtgatacataaaaatgtatatatataaccttttcatgtaacagccaattaaaattaatcagatcgaatatttatattgtataccatgaaagtgtcttgcttacgtgtgactataaacgaagtcgggttAAGGGTCT-ATGCAATGCAA-TTCGA-TTTTCC----AGCAGAGTAAA-CA--CCTAATCCAATTA--AAA--AT--AT-ACTGAAAATTT-GA---CGAAGTTAT-AAGCAGAATC-AACGGAGATATTA-GCGAAAAAC----TCGAAAC--CACAC-CTGAACGGAT-TTTTGA--AAAAGTC--GGTTCT-AGC-GCCA--A-ATCGC-TG-TGACGT-CAC-GTC-GTGTATATCGCCATCTTG-GA--TAGAGAGAAA----GCG-TGTA--GA-TCAGCTGATAAT-TTTCGCGATA-TTTATATCATTTGTCTTTT-GATT-T---GGTGCATTTACA--TGCT-A--TAGGT--ATTTTT-A-TTTAGTCGTGATCGTTGAAAGTTTT--CAGTCGTAGCTATAGTA--------TTCGTGAT-CGGCATTG-TA-AATA-------------T------CA----T-A--------------CG--------------G-T---AATA------TATA-TTGG-TTTGATCGA-TGT--TG-AATGTACTTCTTTGGGAG-TTACAC-CCATA-T--A--CTTAACATTC-CCCAT---AACCAT-G-AGAATTTTCCCAGCCTTGTG--AACATAC-ttgcaagtatatgcgcatgtattttaaccgtacacttgtcacttagtgttttgcaatatacaatttaaaaatttccatgcagggaggtagaggaacactttctgcctgctgcacgatttccataggtctcagcatatgtggttacttttaacttttgttttgcagtaagcataacgtgtattttatagtaccatctaaatagagcgaaatttcgcaatttttgggatctgttttggaagtcatatgcacacattgaaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnctttctgggcggggttttaagttgatttatacaggtttagaaagttcaaacacat
gi|11 : TGAACGGAT-TTTTGA--AAAAGTC--GGTTCTA-GT-GCCA--A-ATCGC-TG-TGACGT-CAC-GTT-GTGTATATCGCCATCTTG-AA--TAGAGAGAAA----GCG-TGTA--AA-TCAGCTGATAAT-TTTCGCGATA-TTTATAT--------TTAT-GTTT-T---GGTGCATTTACA--TGCT-A--TAGGT--A-TTTTTA-TTTAGTCGTGATCGTTGAAAGTTTT--CAGTCG------TAGTA--------TTCGTGAT-CGGCATTT-TA-AATAC------------CGTAATATA----T-AT-------------TGATTTGATCGAT---G-TTG-AATG------TAC--TTCT-TTGG---GA-TGCG-TGGAA-----------AAAAG-TTACAC-CCATA-T--A--CTTAACATTC-CCCAT---AGCCATTG-AGAATTTTTCCAGCCTTGTG--AACATAC--A-TACATGGCAGTGG-CTGAAACCTG-GT-GATAAT--GTGCTTTA--C--TACA---TATTTTAAT----CAT-TATAAT-TATT-TC-A--TATTTACGTATTTT--T-CT-C-GGACTG-AAACC--ATACTGCA-----TCT--GAGA----G-A
gi|12 : AAGGGTCT-ATGCAATGCAA-TTCGA-TTTTCC----AGCAGAGTAAA-CA--CCTAATCCAATTA--AAACTAT--A---CTGAAAATTT-GA---CGAAGTTAT-AAGCAGAATC-AACGGAGATATTA-GCGAAAAAC----TCGAAAC--CACAC-CTGAACGGAT-TTTTGA--AAAAGTC--GGTTCTA-GC-GCCA--A-ATCGC-TG-TGACGT-CAC-GTC-GTGTATATTGCCATCTTG-GA--TAGAAAGAAA----GCG-TGTA--GA-TCAGCTGATAAT-TTTCGCGATA-TTTATATCAT-----TTGT--------------------------CT-T-----------TTGT---TTTGGTCGTGATCGTTGAAATTTTC--CAGTCG------TAGTA--------TTCGTGAT-CTGCATTG-TATAA-----------------------A----A-AC-------------CG----------TACGG-T---AATA------TAT--
gi|13 : aGCGAAT-----AAA-CTT-------AC---CGT----TTTT-AAAA-ATCGCGC-C-C-G-T--CTGTTGA-CGGCTCC--ATT-A-CG-----T------------------TAATA-ACATTCT-T-TTTCCA-GAA----------ATTTTTAA---TGCGAAA--AA-GT--GTGC-GTATTTACAT-------TGTATGT--ACAGAAGAATTTGAAGTCGTTTCTTCTTC--GTAAAGCTCGTGTT-AGAA-TT-G-TTACGTGG-GAAattgatttgat
gi|13 : AGTTCGGGTTAGAAATTGCTTAGCCATGCCAATAA--AAAAAAAAAAAAAAAAAATC--CA-TGTT-AGTGGAAattagtcagtaacttcgagaaagtttggtgtgtgtatggagcagttcgggttagaaattgcttagccatgccaataaaaaaaaaaaaaaaaaaaatccatgttagtggaatccttgaatccacgttagagtggtttttaatggtatttttct
gi|14 : gcgaataaacttaccgtttttaaaaatcgcgcccgtctgttgacggctccattacgttaataacattctttttccagaaatttttaatgcgaaaaagtgtgcgtatttacattgtatgtacagaagaatttgaagtcgtttcttcttcgtaaagctcgtgttagaattgttacgtgggaaattagtcagtaacttcgagaaagtttggtgtgtgtatggagcAAGGGTCT-ATGCA-TGCAA-TTCGA-TTTTTA----AGCATAGTAAA-CA--CCTATTCCAATAA--AAACTAT--A---CTGAAAATTT-GA---CGAAG------------ATC-AACGGAGATATTA-GCGAAAAAC----TCGAAAC--TACAC-CTGAACAGAT-ATTTGA--AAAAGTC--GGTTCTA-GC-GCCA--A-ATCGC-TG-TGACGT-CAC-GTC-GTGTATATCGCCATCTTG-GA--TAGAGAGAAA----GCG-TGTA--GA-TCAGTTGAT-ATATTTTGCGATA-TTTATATCATTTGT-tccttgaatccacgttagagtggtttttaatggtatttttct
gi|15 : aTCT-ATGCAATGCAAATTCGA-TTTTCCA---GGCAGAGTAAA-CA--CCTAATCCAATTT--AAAC-AT--ATATCTGAAAATTTGGA---CG-ACATAT-AAGCAGAATC-AATGGAGATATTA-GCGAAAAACGCGACCGAAAC--CACAT-CTGAACGGA--TTTTGA--AAAAGTC--GGTTTCTAGC-GCCA--A-ATCGCTTGTTGACGT-CAC-GTCTGTGTATATCGCCATCTTGAGA--TAGAGAattttg
gi|16 : TTA--AAA-AATCGAT-CCTGAAAATTT-TATTGCGATCGTAC-A---TGTACT-ATTGGAGATATTT-GGGGTAA------TCACAATTTCACAC-CTGAACG-AC-TTTTAA--ACCGGGC--TGTTTTG-GT-GCGATTA-AT-GT-CG-TGACGT-CAC-GAG-GTCAACATCGCC
gi|17 : taaaagatatctgcaaccccggtcatttgttttaaatttggagggttacagt-ATGCAGGGTATGTTGCA-AATAACCAGTTGCCCACTCTTGCAAAT-GA---GAATATATTTTGT--GTG------C-A-ACCAA-AATATGAAAATCCTAT-TGCCAAC--AT-GGTGTGT-----AAAATTT-------AC---CGTAACTTTTC-CAAA-ATC-CAC-T-T-G-C--AGTTTAA-CA-TTAC--ATT-
gi|18 : AGGGT----TGCA-AATAACCACTCG----------CAAAT-GC---GAGTA-ATTTTATTTGTGGG----C-G-ACCAG-TTTATGAAAGTTCTCT-CGCCCAC--AA-GGCGAGT-----AAAAATTTATCGTAAC---T------TTTC-TGGA-ATT-CGT-T-C-A-C--AGTTTGA-tgtttagaaggtttcaacttctga
gi|2 : AAAGGTCT-GTGCAATGCAA-TGCTA-TTTTTT----GATAAAATAAAATA--TCTACTCAAA--A--AAATGAT--GT-CCTGAAAATTT-GA---CGAAGATAC-TGACTGAATT-AACAGAGATATTACGCGAAAAAC----TC-CAAT--CACAC-CTGAACGTAT-TTTTGA--AAAAGCC--GGGTTTAAGC-GCCA--A-ATCGC-TG-TGACGT-CAC-CGC-ATGTTTTGAGCCATATCG-AAAGTAGAAAAACA----GTA-CGAAT-GA-GCAGTTGA----ATTTCGCT-TAGTTTGAATTGTTTGT-TTGT-ATTT-TC--AACGTATTTAAA--TGTT-T--AAGAT--A-TTAA-A-TT---T-GTGATCGTTGAAAGTTTT--CAGTCG------TAGTA--------TT-GTGAT-CGGCACTG-TA-AAT--------------T------TA----T-AC-------------CG----------T---G-T---ATTG------TAT--TTCT-TTC----GA-CGTG-TG-AG-----------AAAAG-TTGCAC-TTATA-T--C--CATAACATTC-ACTAG---AGCCATGG-AGAA-TTTTCCAGCATTGTG--AACATAC-AA-TATAAGGCAGTGA-CTGAACCCTG-GT-TATAAT--TTGATTTA--C--TAC----------------------ATAAT-TATT-TC-ATGCATTTACGTATTTT--T-CT-C-CGACTG-AAA-C--ATATTGCC-----TCT--GAGA----G-AT----GAA--CGGATGAAAT--TTCT-------G-AC---T-ATACTTT-TATTTTA-TT-TA-CT-GTAGGTA------------------CAGAC-----TG-A-ATTCAGGGT----TGCA-AATAACCACTC----------GCATAT-GC---GAGTA-A-TTTATTTGTGGGC-G-CGG-ACCAA-ATTGTGAAAATCCTCT-CCGCCAC--AT-GGCGAAT------AAACTT-------AC---C------TTTT-AAAA-ATC-CGC-C-C-G-T--CGTTTGA-CG-CTGC--ATC-A-CA-----------------------GTAATACACATTTT-TATTTCCA-GAA----------AT------------------AA-GTGTGTGC-GTATTTACATTGTACAGTGTATGT--AC-GAAT--TTTGAA-TCGTTTTCTC-TC--GT-AAGCTCGTGTTAAGAATTT-G-TTACGTGT-GAATATTTAACGAAGT-CGGGTTAGAAATTGCT-------ACCAATGC-------AAAAAAAAAAAAAAT--CA-GTTT-AGTGAAAG-ATTTATGAAAAT--GCCAC---C----AAAAATC-GTTTTACTGAGAGTTTTATGACTATTGA-TTAGGCCTA-----ATGAA-ATTTTGG-ATAATAT-ATTTTCTTTTGCAAAAC-AAATAA-CTATATAATTGTCGCGATAGCTACC-GAACGatcaacttttacttgcactttcg
gi|21 : tAGGATATCATGCAATGAAA-TGCGATTTTTTT----GGTAGAATAAA-CA--TCTAT--CAAGAAATAAACACT---T-CCGAAAAATTa
gi|22 : TTCAGGGT----TGCA-AATAACCACTCGTCCACTT--GCATAT-GC---GAGTA-ATTTTATTTGTg
gi|23 : ctGCG-AA--AAAGTG-GTGC-GTATTTACAT-------TGTATGT--ACAGAAT--TTTGAA-TCG
gi|24 : TGCAA-TTCGA-TTTTCC----AGCAGAGTAAA-CA--CCTAATCCAAT
gi|25 : AAGGGTCT-ATGCAATGCAA-TTCGA-TT
gi|3 : taAAGGGTCT-ATGCAATGAAA-TGCGA-TTTTTTTTTTGGTAGAATAAA-CA--TCTACTCAAAT----AAATAAT--GT-CCTGAAAATTTTGA---CGAAGATAC-TGGCTGAATT-AACAGAGATATTA-GCGAAAAAC----TCCAA-T--TATACACTGAAAGTAT-TTTTGA--AATAGTC--GGAT-TAAGCCGC----A-ATCGC-TG-TGACGT-CAC-A-----------CAC---------A--TAAACAGCAA----G---TACA--GA-TCAACAGTTGG-ATGTCGCTTTG-TTTGAATTGTTTGT-TTGTAGTTT-T---AACGTACT---A--T----T--AA----------A-A-TTTAGT-G--ATCGTTGAA-GTTTT--CAGTCG------TAGAA--------TTGGTGAT-CG-CATTG-TA-AATACGCGTGATATATAT------TAGATTTGAT-------------CGAA--------T---G-TTG-AATG------TAC--TTCT-TTGG---GA-CGCG-TG--G-----------AAAAGATTACAC-CCATA-T--A--CTTAACATTC-CC-AT---AGCTGT-G-ATAGTTTTTCCAGTCTTGTG--AACATAC-A--TACAAGGCAGTGGGCTGAAGCCTG-GT-GATAAT--TTGCTTTA--C--TGCAATATATTTTAAT----CAT-TATGAT-TATT-TC-AT--ATTTA-GTATTTT--T-CT-C-GGACTG-AAACC--ATACTGCC-----TCT--GAGAGATCG-AT----GAA--CAGATGAAAT--TTCTGTT-GTAGAAA---T-ATACTTT-TATTTTA-TT-TA-CT-GTAGGT--------------------AGACA----TA-ATATTCAGGGT----TGCA-AATAAC---------------ACATCTAAT---GAGT--ATTTTATTTGT-GA--G-T-G-ACCAA-ATTGTGAAAAT-CTCT-CGCTCACATAT-GGCGAGT------AAACTT-------AC---T------TTTT-AAAAGATC-CGCATGC-GTT--CTTTTGA-CG-CTGC--A-T-A-CG-----TTTGTTGCCGAGT-----GTAAT-CATATTTT-TATTTCGA-GAA----------A-TTTTAA---TGTG-----AA-GTG-GTGC-GTATCAACAT-------TGTATGT--ACAGAAT--TTTGAA-T--TTTTCTC-GA--GTGAAGCTC
gi|4 : taGGGT----TGCA-AATAACCACTCG---------CC-------------TA-ATTT-ATTTTTT------C----CCAA-ATT-TGAAAATCCTCT-AGTCCAC--ATTGGCGAGTTGCCTAAAACTT---------------------TT-CAAA-ATC-GGG-T-C-G-T--GGTTTCA-CGGCTGCCAATT-AACG-----TTTTTTT----GCCGAATGTAATACACATTTC-C--CCCCAAGAA----------ATTTCACA---TGTG-AA--AA-ATG--TGCCGTATTATCATT-----GT--ATGT--GCAGAAT--TTTTAA-CTGTTTTTCC-TCAAGTGGAa
gi|4 : cACGTGC-GAA-ATATACCGAAGT-CGGGTTAGAAAATTCT-------ACCCCC-C--AAAAA--------------T--CA-GTTTTAGTGAAAG-GTTTATGAAataatcagagacgtacataatattatagtacacacataattatacatgtatagcgaaagtcgatctcttagaaaattactgcaggaacgtaaaattgttgcaaatgtgtacttaaagatagatctataaatcaaaacttattttgtaatagtaaattaaattaatcagattgaatctttatattgtatgcatatgccgtttaattgtcttgcgccacgtgcgaaatataccgaagtcgggttagaaaattctaccccccaaaaatcagttttagtgaaaggtttatgaattatgattaatgaaattttggaattaatctttcttttgccaaagaaataatttatttaattgttgcgatatactagtatacgagaaggtggccgatcacatgcgcatctgtactagctcatgatctttccagctgattccatatcggaggtagaggaaaacttttctgcctgctgcacgattttcacgggtctcagcatatgcggggttacttttaacctttgttgcagtaagtgtaccgtnnnnnnnnnnnnnnnnnnnnnnnnnatcaaaatgt
gi|4 : cgggttgcaaataaccactcgcctaatttattttttcccaaatttgaaaatcctctagtccacattggcgagttgcctaaaacttttcaaaatcgggtcgtggtttcacggctgccaattaacgtttttttgccgaatgtaatacacatttccccccaagaaatttcacatgtgaaaaatgtgccgtattatcattgtatgtgcagaatttttaactgtttttcctcaagtggaataatcagagacgtacataatattatagtacacacataattatacatgtatagcgaaagtcgatctcttagaaaattactgcaggaacgtaaaattgttgcaaatgtgtacttaaagatagatctataaatcaaaacttattttgtaatagtaaattaaattaatcagattgaatctttatattgtatgcatatgccgtttaattgtcttgcgccG-GGTTA-GAAAAT--TCTAC---CCCCCAAAAATCAGTTTTAGTGAAAGGTTTATGA--ATT-A-TGAT---TA-----ATGAA-ATTTTGGAATTA-AT-C-TTTCTTTTGCCAAAG-AAATAATTTATTTAATTGTTGCGATAttatgattaatgaaattttggaattaatctttcttttgccaaagaaataatttatttaattgttgcgatatactagtatacgagaaggtggccgatcacatgcgcatctgtactagctcatgatctttccagctgattccatatcggaggtagaggaaaacttttctgcctgctgcacgattttcacgggtctcagcatatgcggggttacttttaacctttgttgcagtaagtgtaccgtnnnnnnnnnnnnnnnnnnnnnnnnnatcaaaatgt
gi|5 : cgggttgcaaataaccactcgcctaatttattttttcccaaatttgaaaatcctctagtccacattggcgagttgcctaaaacttttcaaaatcgggtcgtggtttcacggctgccaattaacgtttttttgccgaatgtaatacacatttccccccaagaaatttcacatgtgaaaaatgtgccgtattatcattgtatgtgcagaatttttaactgtttttcctcaagtggaataatcagagacgtacataatattatagtacacacataattatacatgtatagcgaaagtcgatctcttagaaaattactgcaggaacgtaaaattgttgcaaatgtgtacttaaagatagatctataaatcaaaacttattttgtaatagtaaattaaattaatcagattgaatctttatattgtatgcatatgccgtttaattgtcttgcgccacgtgcgaaatataccgaagtcC-ATGTATTGTCACATTTTATT-CTTN-NNNNNN-NNNNN--NNNNNNNN-----NNN--NNGA----A-TT----GAA--CGGATGAAAT--TTCTG--------AC---T-AT-CTTTATATTTTA-TT-TATCT-GTAGGTA-------------------AGAC-----TG-A-ATT-AGGGT----TGCACAATAAC-ACTCG---------GCAAAT-G----GAGTA-ATTTATTTTGTGGG--GGC-G-GACAATAATGTGAAAATCCTCTTCGCC-AC--AT-GG-GAAT-----AAA-TTT-------AC---C------TTTT-AAAA-ATC-CGC---C-G-T--CGTTTGA--G--TCC--ATT-A-AA-----------------------GTCA-ATACATGTT-TATTTC-A-GAA----------TTTTTTA----TGCG-AA--AA-GTG-GTGC-GTATTTAC-TT-----G-GCATGT--ACAAGAT--TTTGAAATCGTTTTCTC-TC--GTAAAGCTCGTGTTAAGAATTTAG-TTACGTGT-GAATATTTAACG-AGT-CGGGTAAG-AATTG-T-------ACCAATGCAAAAAAAAAAAAAAAAAAAAAT--CAGGTTT-AGTGACAGAATTTATGAAAATTGGCCAC---C-----AAAATC-GTTTTA-TGAGAGTTTTATGA--GTT-A---ATGATTAGGCCTATGAAGATTTT-GAATAT-ATAA-TTTCTTTTGCAAAACAAAATAA-ATATATAATTGTCGCGATAGCTACC-GAAtactagtatacgagaaggtggccgatcacatgcgcatctgtactagctcatgatctttccagctgattccatatcggaggtagaggaaaacttttctgcctgctgcacgattttcacgggtctcagcatatgcggggttacttttaacctttgttgcagtaagtgtaccgtnnnnnnnnnnnnnnnnnnnnnnnnnatcaaaatgt
gi|6 : gacaattcgctgcaataataaaAAAGGTCT-GTGCAATGCAA-TGCTA-TTTTTT----GATAGAATAAA-CAATCATAACTCAAAGT--AATTGAT--GT-C-TGAAAATTT-GA---CGAA-ATACTAGGCTGAATTTAACAGAGATATTA-GC-AAAATC----TCCAAAT--CACAC-CTGAAACGTTATTTTGACTAATAGTCCTGGTTC--AGTTGCCA--ATATCGC-TG-TGACGTTCACCGTC-ATGTTTGAGGCCATTATC-GA--AAGAGAAAAAACAAGCGACGTAATGAGTCAGTTGA----ATTTTGCGAC----TAGATAGTT-GT-TTGTTGTTT-TTTCAACGTATTTATAGATGTT-T--AAGAT--A-CTAA-AATTTAGT-G--ATCGTAGACAGTTTTTTCAGTCG------TAGTACATGTATTTTGGTGAT-CGCAATTG-TA-AAT---------------------TA----T-AC-------------CG----------T---G-T---A---------TATTGTTCTATTCG---GA-CGTGATG-AA-----------AAAAG--TGCACATTATA-T--C--CATAACATTT-CACACTGAGGCCATTG-GAATTTTTTCCAGCATTGTGA-AACATAA-AATTATAAGG-AATGG-CTGAACACTGTGT-TATTAC--TTGATTTAACT--TAC----TATGTTGATAACACATATATAAT-TATT-TCTCTGTATTTACGTATTTT--TCCT-C-CGACTGTAAGCC--ATACTGCC-----TCT--GAGA----G-AT----GAACGCGAATGAAAT--TTCT-------G-AC---T-ATATTTT-TATTTTATTT-TA-CT-GTAGgaaaggttgcagtacctatttttacccggatttcaaccgtgccttgtcatttgtaggcctgaggttttcgaccacggtctacatag
gi|7 : TTAAA--GGCC-TCTAAGATTAA-TTAA-AATTTAGT-G--ATCGTTGAAAGTTTT--CAGTCG------TAGTA--------TTTGTGATCCGGCATTGCTA-AA-AT------------T------TA----T-AC-------------CG----------T---GAT---ATTG------TAT--TGAT-TT-----GATCGTGCTG-AG-----------AAAAG-TTGCACATTATA-TTCC--CATAACATTCACCCAG---AGCCATGATAGAATTTTTCCA-CCATGTGAAAACATACAAA-TATAGGGCAGTGG-CT-AACCCTG-TTATATACTCCTTGATTCA--CCATACA---TATTTTAAA----CAT-TATAATCTATTCTC-ATGTATTTACGTATTTT--T-CTACGCGACTG-AAACC--ATACTGCCACAAATCT--GAGA----GAAT----GAA--CGAATGAAATTGTTCT--T----G-AC---TAATACTTT-TATTTTA-TTCTA-CTAGTAGGTACAGCCTCCGGAGTAGGTACAGAC-----TGAA-ATTCAGGGT----TGCA-AATAACCACTTC---------GCATAT-GC---GAGTA-ATTTTATTT-TGGGCCG-C-GAACCAA-ATTGTGAAAATCCTCT-CGCCCAC--AT-GGCGAAT-----AAAACTT-------ACCCTC------TTTTAAAAA-ATC-CGC-C-CGG-TTGGGTTTGATCG-CTGC--ATTCA-CA----------------GC------TAATACACATTTTCTATTTCCA-GAA----------ATCTTTAAATCTGCA-AAACAA-GT--GTGC-GTATTTACA-------ATGTATGCTAACAGAAT--Tt
gi|8 : ATTGTTTGT-TTGT-ATTTCT---AACATATTTAAA--TGTT-TT-AAGAT--A-TTAA-AATTTAGT-G--ATCGTTGAAAGTTTT--CAGTTG------TAGTA--------TTCGTGAT-CGGCATTG-TA-AAT--------------T------TA----T-AT-------------CG----------T---GAT---ATTGGTTTGATAT--TTCT-TTCG---GA-CGTG-TG-AG-----------AAAAG-TTACACATTATAAT--ATCCATAACATTC----------ACCATGG-AGAATGTTTCCAGCATTGTG--AACATAC-AA--ATAAGGCAGTGG-CTGAAGCCTG-GT-TATAAT--TTGCTTTA--C--TACA---TATTTTAAA----CAT-TATAAT-TATT-TC-ATGTATTTACGTATTTT--T-CT-C-CGACTG-AAACCATATACTGCC-----TCTGCGAGATC--G-AT----GAA--GGGATGGAAT--TTCTGAT-GTAG-ACTATT-ATACTTT-TATTTTA-TA-TT-CT-GTAGGTA------------------CAGAC-----TT-A-ATTCAGGGT----TGCA-AATAACCACTCGGCCACAC--GCATAT-GC---GAATA-ATTTTATTT-TTGG--G-C-G-ACCAA-ATTGTGAAAATCCTCT-CATCCAC--AT-GGCGTGT-----AAAACTT-------AC---C------TTTT--AAA-ACC-CGC-T-C-G-T--GGTTTGA-CG-CTGC--ATT-A-CGCTTGTT----------GCCAAATGAAATACACAATTT-TATTTCCA-GAA----------ATTTTTAA---TGTG-AA--AA-GTG-GTGC-GTATTTACAT-------TGTATGT--ACAGTAT--TTTGAA-CCGTTg
gi|9 : AAAAAAGAAAT--CT-GTTT-AGTGAAAG-GTT-AT--AAAT--GCCAC---C----AATAATC-GATTTACTGAAAATTTCATGA--ATT-ATTAATGATTA-----ATGAA---TTTGGAATAA-AT-A-TTTC-TTTGCTAAAC-AGAT-A-TTTTATAATTGTCGCGATAGATA-C-GAA
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|19 ): TAGCCGAACGAACAGGATGTCATGGCCGAGTACCTATTTAAACCCGTAGATAAAAACCGTGGGTTGCACTTGTCATTGTAGGCCGAGGTTTTCGACCCGACGGTCTAACCTCAGGTGA
Unaligned ( gi|20 ): ATAGAAGTGTATTCTCAGATTCATTTGAACTCATGAATTTGAAGTGATCATCAGAACAATTTTGATTAGTTTATTTATAA