lowQualScore : 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 1111111 11 111 777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 111 111 2222222 1111111 1111111 11111111111 111111
lowQualScore : 4 1 1 9999 4444444 4 4 4 4 00 55 8 55 0 444 4 000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 111 3 444 1111111 55 7 7777 3 55 99999 44 6 3 3 4 3 44 44 6 444 44 2 444 7 2 2222222 1111111 44444444 1 33 1 2 66666666666 33333 1 1 1 444444 222 1 66 44 1 3 666 55 3 3 1 4 4 4
lowQualScore : . . . .... ....... . . . . .. .. . .. . ... . ................................................................................................................................................................................................... ... . ... ....... .. . .... . .. ..... .. . . . . . .. .. . ... .. . ... . . ....... ....... ........ . .. . . ........... ..... . . . ...... ... . .. .. . . ... .. . . . . . .
lowQualScore : 4 9 9 4444 8888888 4 4 4 0 44 55 0 55 6 777 0 666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 000 6 999 8888888 00 3 7777 6 00 00000 66 7 3 3 9 1 22 22 2 555 22 4 111 6 4 1111111 6666666 77777777 4 33 4 8 11111111111 66666 4 4 4 333333 555 4 88 66 8 3 444 00 6 6 4 0 0 0
consensus : NGATAT-TAAAAATGAGGTCTG----CATT--T--C-G-GA-TT-TATTAGT-C-GGG--G-AA--AGCTTATTTAA-TA-GC-------C---------CCAGA-CTAG--A-----AC-------------T-------AG-------T--------------G--C-GG---G----G----------------CC-TA-ATCCAGCGGG--TTTTA---CA--G-CA--------CATTTCTTTCCAATT-AAT-------AAT----------AT---AA-ACATAAT--ACAGATACTG-------ATG--TTGCTTTTTT-ACT----GAAAA-TTTTGT--AAGTCGT--AG-TTATC--T-AC-AAAAT-CTTNTACTTTGG-C--GAG--TAGAA-AT--TTT--GT-A---AATGGCGA-C-T-AG--AA-A--T--TT----TA--AAA-TGG--C-GA-CC--A----G---AAATAT-----T-T-C-TA-----GGTCGCCAT---T-TAGC-G--ACCTG-A---CA--G-C-AGATG-C-GA-CTTGGAG
Reference ( gi|8 ) : TGATAT-TAAAAATGAGGTCTG----CATT--T--C-G-GA-TT-TATTAGT-C-AGG--G-AA--AGCTTATTTAA-TA-GC-------C---------CCACC-CTAA--A-----AC-------------T-------AG-------T--------------G--------------G----------------CC-TA-ATCCAGCAGG--TTTTA---CA--G-CA--------CA---CTTT---------T-------AAT----------AT---AA-ACATAAA--ACAGATACTG-------ATG--TTGCTTTTTT-ACT----GAAAA-TTTTGT--AAGTCGT--AG-TTATC--T-AC-AAAAT-CTTATACTTTGG-C--GAG--TAGAA-AT--TTT--GT-A---AATGGTGA-C-T-AG--AA-A--T--TT----TA--AAA-TGG--C-GA-CC--A----G---AAATAT-----T-T-C-TA-----GGTCGCCAT---T-TAGT-G--ACCTG-A---CA--G-C-AGATG-T-GA-CTTGGAG
gi|5 : GATAT-TAAAA-TGAGGTCTG----CATT--T----G-GA-AT-TATTAAT-C--GG--G-AA--AGCTTATTTA--TA-GC-------C---------C-AGA-CTAAG-A-----AC-------------T-------AG-------T--------------GCACTGGGAGGATG-G----------------CC-TA-ATCCAGCGGG--ATTTA---CA--G-CA--------TTT--CTTTCCAATTGA-T-------AAT----------GT---AA-ACATAAT--ACAGATACTG-------ATG--TTGCTTTTTT-ACT----GAAAA-TTTTGT--AAGTCGT--AG-TTATC--T-AC-AGAAT-ATTATAC-TTGG-C--GAG--T--AA-AT--GTT--GT-A---AATGGCGA-C-T-AA--AA-A--T--TT----TT--AAA-TGG--CGGA-CC--A----GA--AAATAT-----T-T-C-TA-----GGTCGCCAT---T-TAGC-G--A-CTG-A----A--G-C-AAATG-T-GA-CTTGGAG
gi|3 : cGATATGTGAGAATGAGGT-TG----CATT--TTTC-G-GA-TT-TTCTAGT-C-GGG--GCAA--AGCTGATT-AA--A-GCT------C---------CCAGCATTAG--A-----AC-------------T-------AA-------T--------------G--------------GTAATGGAAATGGATGGCC-TA-ATGCAGC-GG--TTTTATCCCA--G--A--------CA---TTTT---------C-------AATTAATTGGGATAT---AA-ACATGAATAATTGATACTGG------ATG--TTGCTTTTTT-ACT----GAA----TTTGT--AAGT-GT--AGGTTATC--T-AC-AA--T-CTTTTACTTTGG-----AG--TAGAA-AT--TTTTTGT-A---AATGG-GA-C-T-AGGAAA-A--T--TT----GA--AAA-TGG--C-GA-CC--A----T---GATTATAAGTCT-T-T-TA-----GGTTGCCAT---T-TAGC-G--AGCTG-A---CA--GAC-AGCTG-C-GATCTTGGAGcac
gi|1 : GATAT--AAAAATGAGGTCTG----CATT--T--CTG-GAGTT-TATTAAT-C-GGG--GGAA--AGCTTATTTGAGTATGCATATTCAC---------CCAGA-CTAG--A-----ACATAAGATGCAACAT-------GGGAGGGGAT--------------G--------------G----------------CCCTATATCCCGCGGA--ATTTA---CAATG-AATTATT---CA---TTTTCATCG----T-------AATCAAACC----GT---AAGACATATA---CAGATACTGGCA----ATGATTTGCTTTTTT-ACT----GAAA--TTTTGT--AAGTCGT--GGGTTATCGAT-AC-AAAAT-CTTATACTTTGGGC--GA---TAAAC-ATAGGTT--GT-A---AATG-CGA-C-T-AA--AA-AATC--TT----TAGGAAACTGG--C-GA-CC--A----G---AAATAT-----T-T-C-TA-----AGTCGCCAT---TGTAGTCG--ACCTG-ATTCTAACG-C-AAATGTT-GA-CTTGc
gi|4 : gactcgtatagggagggacgggggagggggggatgcagggggggggggttaattctcgaagtaaccaaccaggcatttattagttcgcacctggtacgaacaagcaaatgtactgtaagattaaatatctaactccgttaatactttcATAT-TAAAAATGAGGTCTG----CATT--T--C-GCGA-AT-TATTAAT-C-GGG--G-AA--AAGCTATTTAAATA-GC-------C---------CCAGA-CTAAGGA-----AC-------------T-------AG-------T--------------GTACTGGATGGATG-G----------------CC-TA-ATCCAGCGGG--ATTTA---CA--G-CA--------TT---TCTT---------TCCAATTAAAT----------ATTGTAA-ACATAAT--ACAGATACTG-------ATG--T-GCTTTTTT-ACA----GAAAAATTTTGTTTAAATCGTGTAT-TTATC--T-T---AAAT-CTTATACTTTGG-C--GAG--TAGAA-AT--GTT--GT-A---A--GGCAA-C-TAAA--AA-A--T--TT----TA--AAA-AGGC-C-GA-CC--A----G---AAATAT-----T-T-C-TA-----GTTCGCCAC---T-TAGC-G--ACCTGAA---CA--G-C-AGATG-T-GA-CTTGGAGagcaat
gi|2 : acaATAT-TAAAAATA--GTCTG----CATGG-C--C-G-GA-AT-TATTAATAC-GGG--G-AA--AGCTTATTTG--TA-GTAT-----C---------CCAGA-CTAACTAGTTGTAC-------------T-------GGA------T--------------G--------------GATG-------------CC-TA-ATCCAGCCGGAATTTAA---CA--GACATTCTTC--CA---ATTT---------T-------AAG----------ATG--AA-ACATAAT--ACAGATACTGCCCACAGATG--TTGCTTTTTTTACTTTGCAGAAA-TTTTGT--AAGTCGT--AG-TTATC--G-AC-AAAAT-CTTATACTTTGG-C--GAGTTTAGAA-AT--GTG--CTAA---AATGGCGACC-T-AA--AA-A-----TT----TA--AAA-TGG--C-GA-CC--A----G---AAATAT-----T-T-CTTA-----GG-CGCCATCCAT-TAGC-GACACCTG-A---CA--G-CAAAATG-TGGA-CATGGAGcac
gi|6 : TAT-TAAAAATGAGGTCTG----CATT--T--C-G-GA-TT-TAATAGT-C-GGG--G-AA--AGCTGATTTAA-AA-GC-------C---------CCAGC-ATAG--A-----AC-------------T-------AG-------T--------------GTACTGGATGGATG-G----------------CC-TA-ATCCA-CGGG--TTTTA---CA--G-CA--------CATTTCTTTCCAATTAAAT-------GAT----------AT---AA-ACATAAT--ACATAAACTG-------ATG--TTGCTTTTTT-ACT----GAAAA-TCTTGT--AAGTCAT--AA-TTATC--T-AC-AAAAT-CTTTTACTTTGG-C--GAG--TAG---AT--TTT--GT-A---AATGGCGA-C-TAAA--AA-A--T--TT----TA--AAA-TGG--C-GA-CC--A----G---AAATAT-----T-T---TA-----GGTCGCCAT---T-TAGC-G--A-----------------AGATG-C-GA-CTTGGAGc
gi|7 : TAT-TAAAAATGAGGTCTG----CATT--T--C-G-GA-TT-TAATAGT-C-GGG--G-AA--AGCTGATTTAA-AA-GC-------C---------CCAGC-ATAG--A-----AC-------------T-------AG-------T--------------GTACTGGGATGGATGG----------------CC-TA-ATCCAGCGGG--TTTTA---CA--G-CA--------CATTTCTTTCCAATTAAAT-------GAT----------AT---AA-ACATAAT--ACAGATACTG-------ATG--TTGCTTTTTT-ACT----GAAAA-TCTTGT--AAGTCAT--AG-TTATC--T-AC-AAAAT-CTTTTACTTTGG-C--GAG--TAGAA-AT--TTT--GT-A---AATGGCGA-C-C-A------------------TA------------------------------AATAT-----T-T-T-TA-----GGTCGCCAT---T-TAGC-G--ACCTG-A---CA--G-C-A-ATG-C-GA-CTcac
gi|9 : TAT-TAAAA-TA--GTCTGTGAACATTACT--C-G--A-TTATATCAAT-CGAGGCGG-AAGAAGCTT--TTAA-TA-GC-------CAACAGTAATCTGTA-CTGG--A-----A--------------T-------GG-------T--------------G--------------G----------------C--TA-ATCC--CTGG--ATTTA---C---G-CATTTCTTGCCA---CTTAA--------T-------AAT----------GT---AA-TCATAAT--ACAGATACT--------AT---TTGCTTTTTTCACT----GAAAA-TTT-GT--A-GTCGT--AG-TTATC--TGAC-AAAATTCATATATTT--G-C--GAG--TA-AA-AT--GTT--GT-A---AATGGCGA-C-T--G--AA-A--T--TT----CA--AAA-TGG--C-GA-CC--A----G---AAATAT-----TCT-C---------GTCGCCAT---T-TAGC-G--ACAT--A---CA--G-C-gtgagca
gi|10 : -TAAAAATAAGGTCTG------------------A-TT-TATTAGC-C-ATG--G-AA--AGCTGA-------A-GC-------C---------CCAGC-CTAG--A-----AC-------------TTCCCATAAG-------TATACTGGGGTGGATG--------------G----------------CC-TA-ATCCAGCGGG--TTTTA---CT--G-CG--------CATTTCTTTCCTATTTAAT-------AAT----------AT---AA-ACATAAT--ACAGATACTG-------ATG--ATGAGTTTTT-ACT----AGAAA-TTTTGT--AAGTCGT--A---TGTG--T-ACAAAAAT-CTTTTACTGTGG-C--AAG--TAGAA-AT--TTT--GT-A---AATGGCGA-C-C-AG--AA----------------------------------------------ATAT-----T-T-C-TA-----GGTCGCCAT---T-TAGC-G--ACCTG-A---CA--G-C-AGAT--T-GA-CTTGGGG
gi|17 : -C-GGG--G-AA--AGCTTATTTAA-TA-AC-------C---------CCGTA-CTAA--A-----AC-------------T-------AG-------T--------------G--------------ca
gi|11 : -------T--------------G--------------G----------------TT-TA-ATCCAGTGGG--TTTTA---CA--G-CA--------CATTTCTTTCCAATTAAAT-------AAA----------AT---AA-ACATAAT--ACAGATACTG-------ACG--TTGCTTTTTT-ACT----GAAAA-TTTTGT--AAGTCTT--AG-TTATC--T-AC-CAAAT-CTTGTACTTTGG-C--GAG--TAGAA-AT--TTT--GT-A---AATGGCGA-C-T-AA--AA-A--T--TT----TA--AAA-TGG--C-GA-CC--A----G---AAATAT-----T-T-C-TA-----GGTCGTCAT---T-TAGC-G--ACCTG-A---CA--G-C-AGATG-T-GA-CTTGGAGtaccag
gi|6 : tgga-ACCTAAA--ATATTT-CTG---------G--TCGCCATTTT-A--------AAA-TTTTTT--A-GTCGC------CATT--T-AC-AAAAT-C---TACTC--G-CCAAAG--TAAAAGAT--TTT--GT-AGATAATTATGA-CTT-AC--AAGA--T--TTTCAGTA--AAA-AAG--C-AA-Cca
gi|15 : tattaaaaatgaggtctgcatttcggatttaatagtcggggaaagctgatttaaaagccccagcatagaactagtgtactggatggatggcctaatccacgggttttacagcacatttctttccaattaaatgatataaacataatacataaactgat-TTATC--TTAC-AAAAT-CTTCTACCATGG-G--GAG--TAGAACAT--T----GT-A---G-------------------------------TA--AAG-T----C-GA-CC--A----G---AAATAT-----T-T-C-TA-----GTTTGCCAT---T-TAGC-A--ACCTG-cgccatttagcgaagatgcgacttggagcac
gi|12 : TGG-C--AAC--TAGAA-AT--TTT--GT-A---AATGGCGA-C-G-AG--AA-A--T--TT----TA--AAA-TGA--T-AA-CC--A----G---AAATAT-----T-T-T-GA-----GGTTGCCAT---T-TAGT-G--ATCTG-A---TA--G-C-AAATG-T-GA-CTAGGAGg
gi|6 : ctttaattcttttaaaT-A---AATGGCGA-CCT-AA--AATA--T--TT----C-------TGG--T-CG-CC--ATTTTA---AAAT-T-----T-T-T-TA-----G-TCGCCAT---T-TAta
gi|5 : tattaaaaatgaggtctgcatttcggatttaatagtcggggaaagctgatttaaaagccccagcatagaactagtgtactggatggatggcctaatccacgggttttacagcacatttctttccaattaaatgatataaacataatacataaactgatgttgcttttttactgaaaatcttgtaagtcataattatctacaaaatcttttactttggcgagtagattttgT-A---AATGGCGA-CCT-AG--AA-A--TATTT----TC------TGGTCC-G--CC--A----TTT-AAAAAT-----T-T-T-TA-----G-TCGCCAT---T-TAgcgaagatgcgacttggagcac
gi|11 : cgatattaaaatgaggtctgcatttggaattattaatcgggaaagcttatttatagcccagactaagaactagtgcactgggaggatggcctaatccagcgggatttacagcatttctttccaattgataatgtaaacataatacagatactgatgttgcttttttactgaaaattttgtaagtcgtagttatctacagaatattatacttggcgagtaaatgttgT-A---AATGACGA-CCT-AG--AA-A--TA-TT----TC------TGG--T-CG-CC--A----TTTTAAA-AT-----T-T-T-TA-----G-TCGCCAT---T-TAgcgactgaagcaaatgtgacttggagcac
gi|9 : tggatggtttaatccagtgggttttacagcacatttctttccaattaaataaaataaacataatacagatactgacgttgcttttttactgaaaattttgtaagtcttagttatctaccaaatcttgtactttggcgagtagaaattttgT-A---AATGGCGA-C-G-AG--AATA--T--TT----C-------TGG--T-CG-CC--ATTTTG---AA--AT-----T-T-C--------AGTCGCCAT---T-TAgcgacctgacagcagatgtgacttggagca
gi|1 : tattaaaatagtctgtgaacattactcgattatatcaatcgaggcggaagaagcttttaatagccaacagtaatctgtactggaatggtggctaatccctggatttacgcatttcttgccacttaataatgtaatcataatacagatactatttgcttttttcactgaaaatttgtagtcgtagttatctgacaaaattcatatatttgcgagtaaaatgttg----TA--CAA-TGG--C-GA-CTT-A----G---AAATAT-----T-T-C-T------GGTCGCCAG---T-Tgcgacatacagc
gi|6 : gactcgtatagggagggacgggggagggggggatgcagggggggggggttaattctcgaagtaaccaaccaggcatttattagttcgcacctggtacgaacaagcaaatgtactgtaagattaaatatctaactccgttaatactttcgatataaaaatgaggtctgcatttctggagtttattaatcgggggaaagcttatttgagtatgcatattcacccagactagaacataagatgcaacatgggaggggatggccctatatcccgcggaatttacaatgaattattcattttcatcgtaatcaaaccgtaagacatatacagatactggcaatgatttgcttttttactgaaattttgtaagtcgtgggttatcgatacaaaatcttatactttgggcgataaacataggttgtaaatgcgactaaaaaatctttagga--AAA-TGG--C-GA-CC--T----A---AAATAT-----T-T-C-T------GGTCGCCAT---T-Tgtcgacctgattctaacgcaaatgttgacttgagcaat
gi|5 : tattaaaaatgaggtctgcatttcggatttaatagtcggggaaagctgatttaaaagccccagcatagaactagtgtactggatggatggcctaatccacgggttttacagcacatttctttccaattaaatgatataaacataatacataaactgatgttgcttttttactgaaaatcttgtaagtcataattatctacaaaatcttttactttggcgagtagattttgtaaatggcgactaaaaaatttta--AAA-TGG--C-GA-CCT-A----G---AAATAT-----T-TTC-TG-----GTCCGCCAT---T-TAagcgaagatgcgacttggagcac
gi|7 : cgatattaaaatgaggtctgcatttggaattattaatcgggaaagcttatttatagcccagactaagaactagtgcactgggaggatggcctaatccagcgggatttacagcatttctttccaattgataatgtaaacataatacagatactgatgttgcttttttactgaaaattttgtaagtcgtagttatctacagaatattatacttggcgagtaaatgttgtaaatggcgactaaaaatttt--AAA-TGG--C-GA-CCT-A----A---AAATAT-----T-T-A-T------GGTCGCCAT---T-TAagcgactgaagcaaatgtgacttggagcac
gi|11 : tattaaaaatgaggtctgcatttcggatttaatagtcggggaaagctgatttaaaagccccagcatagaactagtgtactgggatggatggcctaatccagcgggttttacagcacatttctttccaattaaatgatataaacataatacagatactgatgttgcttttttactgaaaatcttgtaagtcatagttatctacaaaatcttttactttggcgagtagaaattttg--AAA-TGA--C-GA-CCT-A----G---AAATAT-----T-T-C-T------GGTCGCCAT---T-Tagcgacctgacagcaatgcgactgtgagca
gi|4 : tggatggtttaatccagtgggttttacagcacatttctttccaattaaataaaataaacataatacagatactgacgttgcttttttactgaaaattttgtaagtcttagttatctaccaaatcttgtactttggcgagtagaaattttgtaaatggcgactaaaaatttta--AAG-TGG--C-GAACT--A----G---AAATAT-----T-T-C-T------GGTCGGCCT---T-Tagcgacctgacagcagatgtgacttggagca
gi|10 : acaatattaaaaatgaggtctgcatttcgcgaattattaatcggggaaaagctatttaaatagccccagactaaggaactagtgtactggatggatggcctaatccagcgggatttacagcatttctttccaattaaatattgtaaacataatacagatactgatgtgcttttttacagaaaaattttgtttaaatcgtgtatttatcttaaatcttatactttggcgagtagaaatgttgtaaggcaactaaaaaattttaa--AAA-TGG--C-GA-CCT-A----G---AAATAT-----T-T-C-T------GGTCGCCAT---T-TAagcgacctgaacagcagatgtgacttggagcac
gi|3 : taaaaataaggtctgatttattagccatggaaagctgaagccccagcctagaacttcccataagtatactggggtggatggcctaatccagcgggttttactgcgcatttctttcctatttaataatataaacataatacagatactgatgatgagtttttactagaaattttgtaagtcgtatgtgtacaaaaatcttttactgtggcaagtagaaattttg--AAA-TGG--C-AA-CC--T----A---AAAGAC-----T-T-A-TAATCATGGTCGCCAT---T-Tagcgacctgacagcagattgacttggggca
gi|9 : gatatgtgagaatgaggttgcatttttcggattttctagtcggggcaaagctgattaaagctcccagcattagaactaatggtaatggaaatggatggcctaatgcagcggttttatcccagacattttcaattaattgggatataaacatgaataattgatactggatgttgcttttttactgaatttgtaagtgtaggttatctacaatcttttactttggagtagaaattttttgtaaatgggactaggaaaatttga--AAA-TGG--C-GA-CG--A----G----AATAT-----T-T-C-T------GGTCGCCAT---T-Tagcgagctgacagacagctgcgatcttggagc
gi|12 : tattaaaatagtctgtgaacattactcgattatatcaatcgaggcggaagaagcttttaatagccaacagtaatctgtactggaatggtggctaatccctggatttacgcatttcttgccacttaataatgtaatcataatacagatactatttgcttttttcactgaaaatttgtagtcgtagttatctgacaaaattcatatatttgcgagtaaaatgttgtaaatggcgactgaaatttca--AAA-TGG--C-AA-CCTCA--------AAATAT-----T-T-C-T------GGTTATCAT---T-Tagcgacatacagc
gi|15 : ctttaattcttttaaatggcaactagaaattttgtaaatggcgacgagaaatttta--AAA-TGG--C-AAACT--A----G---AAATAT-----T-T-C-T------GGTCGAC-T---T-TAagtgatctgatagcaaatgtgactaggagta
gi|2 : ttatcttacaaaatcttctaccatggggagtagaacattgtagA-TGG--C-G--CCTAA----G---AAATAT-----T-T-C-T------GGTCGCCAT---T-Tagcaacctgg
4 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|13 ): CGCTGGGGGGGGGGGGGGGGGGGGGGGGGGGGAGGGGTGTTAAAATTCGAAGTAACTACCCATGTCGCGCCTGCGCACAAACAAATCGTACTGAAATTAATTCTAATCTAACTCTC
Unaligned ( gi|14 ): CGGAGGGGGGTTAATTCGACAGACCACCCATTCTAGCGCCCCTTACGACAAGCCAATGTACTGAAGATTTTTCCTAACTCGTATACTTT
Unaligned ( gi|16 ): AAAGTACGCACAACCATTTAGTCATACCTGTACGACAAGCAGTGTCTGAAGATTTAAATTACTTGTATACTTA
Unaligned ( gi|18 ): GACAGGCAAGTGTACTGAAGATGAATTCTAACTTGTATACTTA
Alignments
lowQualScore : 1111111111111111111111111111111111111111
lowQualScore : 1111111 11111 111 2222222 1111111 2222222222222222222222222222222222222222 11111111 2222222 11111
lowQualScore : 4 0 0 8888 1111111 4 4 4 3 66666 111 3 0000000 3 88 88 3 1111111 55 5555555555555555555555555555555555555555 99999 3 555 666 2 1 55 55 7777 44444444 3 3 3 55 1111111 55 7 7777 3 55 55 6 44 6 3 3 1 3 44 3 444 44 3 2 0 3 33333 555 44 3 3 3 3 77777 3 3 555 3 3 44 0 3 555 44 3 3 0 888 3
lowQualScore : . . . .... ....... . . . . ..... ... . ....... . .. .. . ....... .. ........................................ ..... . ... ... . . .. .. .... ........ . . . .. ....... .. . .... . .. .. . .. . . . . . .. . ... .. . . . . ..... ... .. . . . . ..... . . ... . . .. . . ... .. . . . ... .
lowQualScore : 0 8 8 5555 4444444 0 0 0 6 44444 777 6 5555555 6 66 66 6 8888888 00 0000000000000000000000000000000000000000 11111 6 555 444 8 4 00 00 7777 55555555 6 6 6 00 8888888 00 3 7777 6 00 00 7 66 7 3 3 0 1 22 1 555 22 1 2 8 1 88888 777 22 1 1 1 1 77777 1 1 444 1 1 22 8 1 888 66 3 3 4 999 6
consensus : NGATAT-TAAAAATGAGGTCTG----CATT--T--C-G-GA-TT-TATTAGT-CGGGG-----AAAGCTTATTTAA-TA-GC-------CC-CAG--ACTA--GAAC-T-------AG--T--------G----------TACTGGG---GGATG------G-----CCTA-ATCCAGCGGG--TTTTA---CAGCACATT--TC--TTTC----CAATT-AA-T---AATAT-AA-ACAT-AATACA--GATACTG-------ATG--TTGCTTTTTT-ACT----GAAAA-TTTTGT--AAGTCGT--AG-TTATC--T-AC-AAAA-TCTTNTACTTTGG-CGAG--TAGAA-AT--TTT--GT-AAATGGCGA-CT-AA--AAA--TTTTA--AAA-TGG-C-GACCAG-AAATAT-----T-TC-TAGGTCGCCAT---T-TAG-CG--ACCTG-A---CA--G-C-AGATG-T-GA-CTTGGAG
Reference ( family-924 ) : NGATAT-TAAAAATGAGGTCTG----CATT--T--C-G-GA-TT-TATTAGT-CGGGG-----AAAGCTTATTTAA-TA-GC-------CC-CAG--ACTA--GAAC-T-------AG--T--------G----------C---------GG--G------G-----CCTA-ATCCAGCGGG--TTTTA---CAGCACATT--TC--TTTC----CAATT-AA-T---AATAT-AA-ACAT-AATACA--GATACTG-------ATG--TTGCTTTTTT-ACT----GAAAA-TTTTGT--AAGTCGT--AG-TTATC--T-AC-AAAA-TCTTNTACTTTGG-CGAG--TAGAA-AT--TTT--GT-AAATGGCGA-CT-AG--AAA--TTTTA--AAA-TGG-C-GACCAG-AAATAT-----T-TC-TAGGTCGCCAT---T-TAG-CG--ACCTG-A---CA--G-C-AGATG-C-GA-CTTGGAG
gi|1 : GATAT--AAAAATGAGGTCTG----CATT--T--CTG-GAGTT-TATTAAT-CGGGGG----AAAGCTTATTTGAGTATGCATATTCACC-CAG--ACTA--GAACAT-------AAGAT--------G----------CAACATGGGAGG--G------GATGGCCCTATATCCCGCGGA--ATTTA---CAATGAATTATTCATTTTCATCGTAATC-AA-----ACCGT-AAGACAT-A-TACA--GATACTGGCA----ATGATTTGCTTTTTT-ACT----GAAA--TTTTGT--AAGTCGT--GGGTTATCGAT-AC-AAAA-TCTTATACTTTGGGCGA---TAAAC-ATAGGTT--GT-AAATG-CGA-CT-AA--AAAATCTTTAGGAAACTGG-C-GACCAG-AAATAT-----T-TC-TAAGTCGCCAT---TGTAGTCG--ACCTG-ATTCTAACG-C-AAATGTT-GA-CTTG
gi|10 : gactcgtatagggagggacgggggagggggggatgcagggggggggggttaattctcgaagtaaccaaccaggcatttattagttcgcacctggtacgaacaagcaaatgtactgtaagattaaatatctaactccgttaatactttc-TAAAAATAAGGTCTG------------------A-TT-TATTAGC-CATGG-----AAAGCTGA-------A-GC-------CC-CAG--CCTA--GAAC-TTCCCATAAG--TATACTGGGG----------T---------GGATG------G-----CCTA-ATCCAGCGGG--TTTTA---CTGCGCATT--TC--TTTC----CTATTTAA-T---AATAT-AA-ACAT-AATACA--GATACTG-------ATG--ATGAGTTTTT-ACT----AGAAA-TTTTGT--AAGTCGT--A---TGTG--T-ACAAAAA-TCTTTTACTGTGG-CAAG--TAGAA-AT--TTT--GT------------------------------AAA-TGG-C-GACCAG-AAATAT-----T-TC-TAGGTCGCCAT---T-TAG-CG--ACCTG-A---CA--G-C-AGAT--T-GA-CTTGGGGagcaat
gi|11 : --G------G-----TTTA-ATCCAGTGGG--TTTTA---CAGCACATT--TC--TTTC----CAATT-AAAT---AAAAT-AA-ACAT-AATACA--GATACTG-------ACG--TTGCTTTTTT-ACT----GAAAA-TTTTGT--AAGTCTT--AG-TTATC--T-AC-CAAA-TCTTGTACTTTGG-CGAG--TAGAA-AT--TTT--GT-AAATGGCGA-CT-AA--AAA--TTTTA--AAA-TGG-C-GACCAG-AAATAT-----T-TC-TAGGTCGTCAT---T-TAG-CG--ACCTG-A---CA--G-C-AGATG-T-GA-CTTGGAGca
gi|12 : tggatTGG-CAAC--TAGAA-AT--TTT--GT-AAATGGCGA-CG-AG--AAA--TTTTA--AAA-TGA-T-AACCAG-AAATAT-----T-TT-GAGGTTGCCAT---T-TAG-TG--ATCTG-A---TA--G-C-AAATG-T-GA-CTAGGAGca
gi|15 : ctttaattcttttaaa-TTATC--TTAC-AAAA-TCTTCTACCATGG-GGAG--TAGAACAT--T----GT-AG-----------------------TA--AAG-T---C-GACCAG-AAATAT-----T-TC-TAGTTTGCCAT---T-TAG-CA--ACCTG-ta
gi|17 : -CGGGG-----AAAGCTTATTTAA-TA-AC-------CC-CGT--ACTA--AAAC-T-------AG--T--------G----------g
gi|2 : ATAT-TAAAAATA--GTCTG----CATGG-C--C-G-GA-AT-TATTAATACGGGG-----AAAGCTTATTTG--TA-GTAT-----CC-CAG--ACTA----AC-T-------AG--TTGT-----A----------C---------TG--GATGGATG-----CCTA-ATCCAGCCGGAATTTAA---CAG-ACATT--C----TTC----CAATT-T--T---AAGATGAA-ACAT-AATACA--GATACTGCCCACAGATG--TTGCTTTTTTTACTTTGCAGAAA-TTTTGT--AAGTCGT--AG-TTATC--G-AC-AAAA-TCTTATACTTTGG-CGAGTTTAGAA-AT--GTG--CTAAAATGGCGACCT-AA--AAA---TTTA--AAA-TGG-C-GACCAG-AAATAT-----T-TCTTAGG-CGCCATCCAT-TAG-CGACACCTG-A---CA--G-CAAAATG-TGGA-CATGGAGtaccag
gi|3 : GATATGTGAGAATGAGGT-TG----CATT--TTTC-G-GA-TT-TTCTAGT-CGGGGC----AAAGCTGATT-AA--A-GCT------CC-CAGC-ATTA--GAAC-T-------AA--T--------GGTAATGGAAAT---------GGATG------G-----CCTA-ATGCAGCGG---TTTTATCCCAG-ACATT--TT----------CAATT-AA-TTGGGATAT-AA-ACATGAATA-ATTGATACTGG------ATG--TTGCTTTTTT-ACT----GAA----TTTGT--AAGT-GT--AGGTTATC--T-AC-AA---TCTTTTACTTTGG---AG--TAGAA-AT--TTTTTGT-AAATGG-GA-CT-AGGAAAA--TTTGA--AAA-TGG-C-GACCAT-GATTATAAGTCT-TT-TAGGTTGCCAT---T-TAG-CG--AGCTG-A---CA--GAC-AGCTG-C-GATCTTGGAGc
gi|4 : ATAT-TAAAAATGAGGTCTG----CATT--T--C-GCGA-AT-TATTAAT-CGGGG-----AAAAGCTATTTAAATA-GC-------CC-CAG--ACTAAGGAAC-T-------AG--T--------G----------TACTGGAT--GGATG------G-----CCTA-ATCCAGCGGG--ATTTA---CAGCA--TT--TC--TTTC----CAATT-AAAT---ATTGT-AA-ACAT-AATACA--GATACTG-------ATG--T-GCTTTTTT-ACA----GAAAAATTTTGTTTAAATCGTGTAT-TTATC--T-T---AAA-TCTTATACTTTGG-CGAG--TAGAA-AT--GTT--GT-AA--GGCAA-CTAAA--AAA--TTTTA--AAA-AGGCC-GACCAG-AAATAT-----T-TC-TAGTTCGCCAC---T-TAG-CG--ACCTGAA---CA--G-C-AGATG-T-GA-CTTGGAGc
gi|5 : acaGATAT-TAAAA-TGAGGTCTG----CATT--T----G-GA-AT-TATTAAT-CGGG------AAAGCTTATTTA--TA-GC-------CC--AG--ACTAA-GAAC-T-------AG--T--------G----------CACTGGGA--GGATG------G-----CCTA-ATCCAGCGGG--ATTTA---CAGCA--TT--TC--TTTC----CAATT-GA-T---AATGT-AA-ACAT-AATACA--GATACTG-------ATG--TTGCTTTTTT-ACT----GAAAA-TTTTGT--AAGTCGT--AG-TTATC--T-AC-AGAA-TATTATAC-TTGG-CGAG--T--AA-AT--GTT--GT-AAATGGCGA-CT-AA--AAA--TTTTT--AAA-TGG-CGGACCAGAAAATAT-----T-TC-TAGGTCGCCAT---T-TAG-CG--A-CTG-A----A--G-C-AAATG-T-GA-CTTGGAGcac
gi|6 : cTAT-TAAAAATGAGGTCTG----CATT--T--C-G-GA-TT-TAATAGT-CGGGG-----AAAGCTGATTTAA-AA-GC-------CC-CAG--CATA--GAAC-T-------AG--T--------G----------TACTGGAT--GGATG------G-----CCTA-ATCCA-CGGG--TTTTA---CAGCACATT--TC--TTTC----CAATTAAA-T---GATAT-AA-ACAT-AATACA--TAAACTG-------ATG--TTGCTTTTTT-ACT----GAAAA-TCTTGT--AAGTCAT--AA-TTATC--T-AC-AAAA-TCTTTTACTTTGG-CGAG--TAG---AT--TTT--GT-AAATGGCGA-CTAAA--AAA--TTTTA--AAA-TGG-C-GACCAG-AAATAT-----T-T--TAGGTCGCCAT---T-TAG-CG--A-----------------AGATG-C-GA-CTTGGAGcac
gi|7 : TAT-TAAAAATGAGGTCTG----CATT--T--C-G-GA-TT-TAATAGT-CGGGG-----AAAGCTGATTTAA-AA-GC-------CC-CAG--CATA--GAAC-T-------AG--T--------G----------TACTGGGAT-GGATG------G-----CCTA-ATCCAGCGGG--TTTTA---CAGCACATT--TC--TTTC----CAATT-AAAT---GATAT-AA-ACAT-AATACA--GATACTG-------ATG--TTGCTTTTTT-ACT----GAAAA-TCTTGT--AAGTCAT--AG-TTATC--T-AC-AAAA-TCTTTTACTTTGG-CGAG--TAGAA-AT--TTT--GT------------------------------AAA-TGG-C-GACCAT-AAATAT-----T-TT-TAGGTCGCCAT---T-TAG-CG--ACCTG-A---CA--G-C-A-ATG-C-GA-CTcac
gi|8 : GATAT-TAAAAATGAGGTCTG----CATT--T--C-G-GA-TT-TATTAGT-CAGGG-----AAAGCTTATTTAA-TA-GC-------CC-CAC--CCTA--AAAC-T-------AG--T--------G-------------------------------G-----CCTA-ATCCAGCAGG--TTTTA---CAGCACA-----C--TTT--------------T---AATAT-AA-ACAT-AAAACA--GATACTG-------ATG--TTGCTTTTTT-ACT----GAAAA-TTTTGT--AAGTCGT--AG-TTATC--T-AC-AAAA-TCTTATACTTTGG-CGAG--TAGAA-AT--TTT--GT-AAATGGTGA-CT-AG--AAA--TTTTA--AAA-TGG-C-GACCAG-AAATAT-----T-TC-TAGGTCGCCAT---T-TAG-TG--ACCTG-A---CA--G-C-AGATG-T-GA-CTTGGAGgtgagca
gi|9 : tTAT-TAAAA-TA--GTCTGTGAACATTACT--C-G--A-TTATATCAAT-CGAGGCGGAAGAAGCTT--TTAA-TA-GC-------CAACAGTAATCT--GTAC-T-------GG--A--------A----------T---------GG--T------G-----GCTA-ATCC--CTGG--ATTTA---CG---CATT--TC--TTGC----CACTT-AA-T---AATGT-AA-TCAT-AATACA--GATACT--------AT---TTGCTTTTTTCACT----GAAAA--TTTGT---AGTCGT--AG-TTATC--TGAC-AAAATTCATATATTT--G-CGAG--TA-AA-AT--GTT--GT-AAATGGCGA-CT--G--AAA--TTTCA--AAA-TGG-C-GACCAG-AAATAT-----TCTC----GTCGCCAT---T-TAG-CG--ACAT--A---CA--G-C-
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|13 ): CGCTGGGGGGGGGGGGGGGGGGGGGGGGGGGGAGGGGTGTTAAAATTCGAAGTAACTACCCATGTCGCGCCTGCGCACAAACAAATCGTACTGAAATTAATTCTAATCTAACTCTC
Unaligned ( gi|14 ): CGGAGGGGGGTTAATTCGACAGACCACCCATTCTAGCGCCCCTTACGACAAGCCAATGTACTGAAGATTTTTCCTAACTCGTATACTTT
Unaligned ( gi|16 ): AAAGTACGCACAACCATTTAGTCATACCTGTACGACAAGCAGTGTCTGAAGATTTAAATTACTTGTATACTTA
Unaligned ( gi|18 ): GACAGGCAAGTGTACTGAAGATGAATTCTAACTTGTATACTTA
Alignments
lowQualScore : 1111111 11111 2222222 1111111 2222222 11111111 2222222 1111
lowQualScore : 4 0 0 8888 1111111 4 4 4 3 3 22222 3 999 3 0000000 3 9999 3 1111111 3 3 7777 777 8888888 3 3 555 666 2 1 55 55 7777 44444444 3 3 3 55 1111111 55 7 7777 3 55 88 3 44 6 3 3 1 3 44 3 444 44 3 2 0 3 0000 555 44 3 3 3 3 77777 3 3 555 3 3 44 0 3 555 44 3 3 0 3 3 3
lowQualScore : . . . .... ....... . . . . . ..... . ... . ....... . .... . ....... . . .... ... ....... . . ... ... . . .. .. .... ........ . . . .. ....... .. . .... . .. .. . .. . . . . . .. . ... .. . . . . .... ... .. . . . . ..... . . ... . . .. . . ... .. . . . . . .
lowQualScore : 0 8 8 5555 4444444 0 0 0 6 6 77777 6 555 6 5555555 6 7777 6 8888888 6 6 7777 000 8888888 6 6 555 444 8 4 00 00 7777 55555555 6 6 6 00 8888888 00 3 7777 6 00 66 3 66 7 3 3 0 1 22 1 555 22 1 2 8 1 7777 777 22 1 1 1 1 77777 1 1 444 1 1 22 8 1 888 66 3 3 4 6 6 6
consensus : NGATAT-TAAAAATGAGGTCTG----CATT--T--C-G-GA-TT-TATTAGT-C-GGGG-----AAAGCTTATTT-AA-TA-GC-------CCCAG-ACTA--G-AAC-T-------AGT-G-TAC----TG---GG---G--GATGG-CCTA-ATCCAGCGGG--TTTTA---CAGCACAT--TTC--TTTC----CAATT-AA-T---AATAT-AA-ACAT-AATACA--GATACTG-------ATG--TTGCTTTTTT-ACT----GAAAA-TTTTGT--AAGTCGT--AG-TTATC--T-AC-AAAA-TCTTNTACTTT-GGCGAG--TAGAA-AT--TTT--GT-AAATGGCGA-CT-A--AAAA--TTTTA--AAA-TGG-C-GACCAG-AAATAT-----T-TC-TAGGTCGCCAT---T-TAG-CG--ACCTG-A---CA--G-C-AGATG-T-GA-CTTGGAG
Reference ( family-924 ) : NGATAT-TAAAAATGAGGTCTG----CATT--T--C-G-GA-TT-TATTAGT-C-GGGG-----AAAGCTTATTT-AA-TA-GC-------CCCAG-ACTA--G-AAC-T-------AGT-G-TAC----TG---GG---G--GATGG-CCTA-ATCCAGCGGG--TTTTA---CAGCACAT--TTC--TTTC----CAATT-AA-T---AATAT-AA-ACAT-AATACA--GATACTG-------ATG--TTGCTTTTTT-ACT----GAAAA-TTTTGT--AAGTCGT--AG-TTATC--T-AC-AAAA-TCTTNTACTTT-GGCGAG--TAGAA-AT--TTT--GT-AAATGGCGA-CT-A--AAAA--TTTTA--AAA-TGG-C-GACCAG-AAATAT-----T-TC-TAGGTCGCCAT---T-TAG-CG--ACCTG-A---CA--G-C-AGATG-T-GA-CTTGGAG
gi|1 : GATAT--AAAAATGAGGTCTG----CATT--T--CTG-GAGTT-TATTAAT-CGGGGG-----AAAGCTTATTTGAG-TATGCATATTCACCCAG-ACTA--G-AACAT-------AAG-A-TGCAACATGGGAGG---G--GATGGCCCTATATCCCGCGGA--ATTTA---CAATGAATTATTCATTTTCATCGTAATC-AA-----ACCGT-AAGACAT--ATACA--GATACTGGCA----ATGATTTGCTTTTTT-ACT----G-AAA-TTTTGT--AAGTCGTG-GG-TTATCGAT-AC-AAAA-TCTTATACTTTGGGCGA---TAAAC-ATAGGTT--GT-AAAT-GCGA-CT-A--AAAAATCTTTAGGAAACTGG-C-GACCAG-AAATAT-----T-TC-TAAGTCGCCAT---TGTAGTCG--ACCTG-ATTCTAACG-C-AAATGTT-GA-CTTG
gi|10 : gactcgtatagggagggacgggggagggggggatgcagggggggggggttaattctcgaagtaaccaaccaggcatttattagttcgcacctggtacgaacaagcaaatgtactgtaagattaaatatctaactccgttaatactttc-TAAAAATAAGGTCTG------------------A-TT-TATTAGC-C-ATGG-----AAAGCTGA--------A-GC-------CCCAG-CCTA--G-AAC-TTCCCATAAGT-A-TAC----TG---GG---GTGGATGG-CCTA-ATCCAGCGGG--TTTTA---CTGCGCAT--TTC--TTTC----CTATTTAA-T---AATAT-AA-ACAT-AATACA--GATACTG-------ATG--ATGAGTTTTT-ACT----AGAAA-TTTTGT--AAGTCGT--A---TGTG--T-ACAAAAA-TCTTTTACTGT-GGCAAG--TAGAA-AT--TTT--GT------------------------------AAA-TGG-C-GACCAG-AAATAT-----T-TC-TAGGTCGCCAT---T-TAG-CG--ACCTG-A---CA--G-C-AGAT--T-GA-CTTGGGGagcaat
gi|11 : ---G--GATGG-TTTA-ATCCAGTGGG--TTTTA---CAGCACAT--TTC--TTTC----CAATT-AAAT---AAAAT-AA-ACAT-AATACA--GATACTG-------ACG--TTGCTTTTTT-ACT----GAAAA-TTTTGT--AAGTCTT--AG-TTATC--T-AC-CAAA-TCTTGTACTTT-GGCGAG--TAGAA-AT--TTT--GT-AAATGGCGA-CT-A--AAAA--TTTTA--AAA-TGG-C-GACCAG-AAATAT-----T-TC-TAGGTCGTCAT---T-TAG-CG--ACCTG-A---CA--G-C-AGATG-T-GA-CTTGGAGca
gi|12 : tT-GGCAAC--TAGAA-AT--TTT--GT-AAATGGCGA-CG-A--GAAA--TTTTA--AAA-TGA-T-AACCAG-AAATAT-----T-TT-GAGGTTGCCAT---T-TAG-TG--ATCTG-A---TA--G-C-AAATG-T-GA-CTAGGAGca
gi|15 : ctttaattcttttaaa-TTATC--TTAC-AAAA-TCTTCTACCAT-GGGGAG--TAGAACAT--T----GT-AG-----------------------TA--AAG-T---C-GACCAG-AAATAT-----T-TC-TAGTTTGCCAT---T-TAG-CA--ACCTG-ta
gi|17 : -C-GGGG-----AAAGCTTATTT-AA-TA-AC-------CCCGT-ACTA--A-AAC-T-------AGT-G-TAC----g
gi|2 : ATAT-TAAAAATA--GTCTG----CATGG-C--C-G-GA-AT-TATTAATAC-GGGG-----AAAGCTTATTT-G--TA-GTAT-----CCCAG-ACTA-----AC-T-------AGTTG-TAC----TG---GAT--G--GATG--CCTA-ATCCAGCCGGAATTTAA---CAG-ACAT--TC----TTC----CAATT-T--T---AAGATGAA-ACAT-AATACA--GATACTGCCCACAGATG--TTGCTTTTTTTACTTTGCAGAAA-TTTTGT--AAGTCGT--AG-TTATC--G-AC-AAAA-TCTTATACTTT-GGCGAGTTTAGAA-AT--GTG--CTAAAATGGCGACCT-A--AAAA---TTTA--AAA-TGG-C-GACCAG-AAATAT-----T-TCTTAGG-CGCCATCCAT-TAG-CGACACCTG-A---CA--G-CAAAATG-TGGA-CATGGAGcag
gi|3 : GATATGTGAGAATGAGGT-TG----CATT--TTTC-G-GA-TT-TTCTAGT-C-GGGGC----AAAGCTGATT--AA--A-GCT------CCCAGCATTA--G-AAC-T-------AAT-GGTAA----TG---GAAATG--GATGG-CCTA-ATGCAGCGG---TTTTATCCCAG-ACAT--TTT----------CAATT-AA-TTGGGATAT-AA-ACATGAATA-ATTGATACTGG------ATG--TTGCTTTTTT-ACT----GAA----TTTGT--AAGT-GT--AGGTTATC--T-AC-AA---TCTTTTACTTT-GG--AG--TAGAA-AT--TTTTTGT-AAATGG-GA-CT-AGGAAAA--TTTGA--AAA-TGG-C-GACCAT-GATTATAAGTCT-TT-TAGGTTGCCAT---T-TAG-CG--AGCTG-A---CA--GAC-AGCTG-C-GATCTTGGAGc
gi|4 : ATAT-TAAAAATGAGGTCTG----CATT--T--C-GCGA-AT-TATTAAT-C-GGGG-----AAAAGCTATTT-AAATA-GC-------CCCAG-ACTAAGG-AAC-T-------AGT-G-TAC----TG---GAT--G--GATGG-CCTA-ATCCAGCGGG--ATTTA---CAGCA--T--TTC--TTTC----CAATT-AAAT---ATTGT-AA-ACAT-AATACA--GATACTG-------ATG--T-GCTTTTTT-ACA----GAAAAATTTTGTTTAAATCGTGTAT-TTATC--T-T---AAA-TCTTATACTTT-GGCGAG--TAGAA-AT--GTT--GT-AA--GGCAA-CTAA--AAAA--TTTTA--AAA-AGGCC-GACCAG-AAATAT-----T-TC-TAGTTCGCCAC---T-TAG-CG--ACCTGAA---CA--G-C-AGATG-T-GA-CTTGGAGc
gi|5 : acaGATAT-TAAAA-TGAGGTCTG----CATT--T----G-GA-AT-TATTAAT-C-GGG------AAAGCTTATTT-A--TA-GC-------CC-AG-ACTAA-G-AAC-T-------AGT-G-CAC----TG---GGA--G--GATGG-CCTA-ATCCAGCGGG--ATTTA---CAGCA--T--TTC--TTTC----CAATT-GA-T---AATGT-AA-ACAT-AATACA--GATACTG-------ATG--TTGCTTTTTT-ACT----GAAAA-TTTTGT--AAGTCGT--AG-TTATC--T-AC-AGAA-TATTATAC-TT-GGCGAG--T--AA-AT--GTT--GT-AAATGGCGA-CT-A--AAAA--TTTTT--AAA-TGG-CGGACCAGAAAATAT-----T-TC-TAGGTCGCCAT---T-TAG-CG--A-CTG-A----A--G-C-AAATG-T-GA-CTTGGAGcac
gi|6 : cTAT-TAAAAATGAGGTCTG----CATT--T--C-G-GA-TT-TAATAGT-C-GGGG-----AAAGCTGATTT-AA-AA-GC-------CCCAG-CATA--G-AAC-T-------AGT-G-TAC----TG---GAT--G--GATGG-CCTA-ATCCA-CGGG--TTTTA---CAGCACAT--TTC--TTTC----CAATTAAA-T---GATAT-AA-ACAT-AATACA--TAAACTG-------ATG--TTGCTTTTTT-ACT----GAAAA-TCTTGT--AAGTCAT--AA-TTATC--T-AC-AAAA-TCTTTTACTTT-GGCGAG--TAG---AT--TTT--GT-AAATGGCGA-CTAA--AAAA--TTTTA--AAA-TGG-C-GACCAG-AAATAT-----T-T--TAGGTCGCCAT---T-TAG-CG--A-----------------AGATG-C-GA-CTTGGAGcac
gi|7 : TAT-TAAAAATGAGGTCTG----CATT--T--C-G-GA-TT-TAATAGT-C-GGGG-----AAAGCTGATTT-AA-AA-GC-------CCCAG-CATA--G-AAC-T-------AGT-G-TAC----TG---GGAT-G--GATGG-CCTA-ATCCAGCGGG--TTTTA---CAGCACAT--TTC--TTTC----CAATT-AAAT---GATAT-AA-ACAT-AATACA--GATACTG-------ATG--TTGCTTTTTT-ACT----GAAAA-TCTTGT--AAGTCAT--AG-TTATC--T-AC-AAAA-TCTTTTACTTT-GGCGAG--TAGAA-AT--TTT--GT------------------------------AAA-TGG-C-GACCAT-AAATAT-----T-TT-TAGGTCGCCAT---T-TAG-CG--ACCTG-A---CA--G-C-A-ATG-C-GA-CTcac
gi|8 : GATAT-TAAAAATGAGGTCTG----CATT--T--C-G-GA-TT-TATTAGT-C-AGGG-----AAAGCTTATTT-AA-TA-GC-------CCCAC-CCTA--A-AAC-T-------AGT-G-------------------------G-CCTA-ATCCAGCAGG--TTTTA---CAGCACA-----C--TTT--------------T---AATAT-AA-ACAT-AAAACA--GATACTG-------ATG--TTGCTTTTTT-ACT----GAAAA-TTTTGT--AAGTCGT--AG-TTATC--T-AC-AAAA-TCTTATACTTT-GGCGAG--TAGAA-AT--TTT--GT-AAATGGTGA-CT-A--GAAA--TTTTA--AAA-TGG-C-GACCAG-AAATAT-----T-TC-TAGGTCGCCAT---T-TAG-TG--ACCTG-A---CA--G-C-AGATG-T-GA-CTTGGAGgtgagca
gi|9 : tTAT-TAAAA-TA--GTCTGTGAACATTACT--C-G--A-TTATATCAAT-C-GAGGCGGAAGAAGCTT--TT-AA-TA-GC-------C---A-AC-A--GTAAT-C---------T-G-TAC----TG---GA---AT-GGTGG-C-TA-ATCC--CTGG--ATTTA---CG---CAT--TTC--TTGC----CACTT-AA-T---AATGT-AA-TCAT-AATACA--GATACT--------AT---TTGCTTTTTTCACT----GAAAA--TTTGT---AGTCGT--AG-TTATC--TGAC-AAAATTCATATATTT---GCGAG--TA-AA-AT--GTT--GT-AAATGGCGA-CT----GAAA--TTTCA--AAA-TGG-C-GACCAG-AAATAT-----TCTC----GTCGCCAT---T-TAG-CG--ACAT--A---CA--G-C-
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|13 ): CGCTGGGGGGGGGGGGGGGGGGGGGGGGGGGGAGGGGTGTTAAAATTCGAAGTAACTACCCATGTCGCGCCTGCGCACAAACAAATCGTACTGAAATTAATTCTAATCTAACTCTC
Unaligned ( gi|14 ): CGGAGGGGGGTTAATTCGACAGACCACCCATTCTAGCGCCCCTTACGACAAGCCAATGTACTGAAGATTTTTCCTAACTCGTATACTTT
Unaligned ( gi|16 ): AAAGTACGCACAACCATTTAGTCATACCTGTACGACAAGCAGTGTCTGAAGATTTAAATTACTTGTATACTTA
Unaligned ( gi|18 ): GACAGGCAAGTGTACTGAAGATGAATTCTAACTTGTATACTTA
Alignments
lowQualScore : 1111111 11111 2222222 1111111 2222222 11111111 2222222 1111
lowQualScore : 4 0 0 8888 1111111 4 4 4 3 3 22222 3 999 3 0000000 3 9999 3 1111111 3 3 7777 777 8888888 3 3 555 666 2 1 55 55 7777 44444444 3 3 3 55 1111111 55 7 7777 3 55 88 3 44 6 3 3 1 3 44 3 444 44 3 2 0 3 0000 555 44 3 3 3 3 77777 3 3 555 3 3 44 0 3 555 44 3 3 0 3 3 3
lowQualScore : . . . .... ....... . . . . . ..... . ... . ....... . .... . ....... . . .... ... ....... . . ... ... . . .. .. .... ........ . . . .. ....... .. . .... . .. .. . .. . . . . . .. . ... .. . . . . .... ... .. . . . . ..... . . ... . . .. . . ... .. . . . . . .
lowQualScore : 0 8 8 5555 4444444 0 0 0 6 6 77777 6 555 6 5555555 6 7777 6 8888888 6 6 7777 000 8888888 6 6 555 444 8 4 00 00 7777 55555555 6 6 6 00 8888888 00 3 7777 6 00 66 3 66 7 3 3 0 1 22 1 555 22 1 2 8 1 7777 777 22 1 1 1 1 77777 1 1 444 1 1 22 8 1 888 66 3 3 4 6 6 6
consensus : NGATAT-TAAAAATGAGGTCTG----CATT--T--C-G-GA-TT-TATTAGT-C-GGGG-----AAAGCTTATTT-AA-TA-GC-------CCCAG-ACTA--G-AAC-T-------AGT-G-TAC----TG---GG---G--GATGG-CCTA-ATCCAGCGGG--TTTTA---CAGCACAT--TTC--TTTC----CAATT-AA-T---AATAT-AA-ACAT-AATACA--GATACTG-------ATG--TTGCTTTTTT-ACT----GAAAA-TTTTGT--AAGTCGT--AG-TTATC--T-AC-AAAA-TCTTNTACTTT-GGCGAG--TAGAA-AT--TTT--GT-AAATGGCGA-CT-A--AAAA--TTTTA--AAA-TGG-C-GACCAG-AAATAT-----T-TC-TAGGTCGCCAT---T-TAG-CG--ACCTG-A---CA--G-C-AGATG-T-GA-CTTGGAG
Reference ( family-924 ) : NGATAT-TAAAAATGAGGTCTG----CATT--T--C-G-GA-TT-TATTAGT-C-GGGG-----AAAGCTTATTT-AA-TA-GC-------CCCAG-ACTA--G-AAC-T-------AGT-G-TAC----TG---GG---G--GATGG-CCTA-ATCCAGCGGG--TTTTA---CAGCACAT--TTC--TTTC----CAATT-AA-T---AATAT-AA-ACAT-AATACA--GATACTG-------ATG--TTGCTTTTTT-ACT----GAAAA-TTTTGT--AAGTCGT--AG-TTATC--T-AC-AAAA-TCTTNTACTTT-GGCGAG--TAGAA-AT--TTT--GT-AAATGGCGA-CT-A--AAAA--TTTTA--AAA-TGG-C-GACCAG-AAATAT-----T-TC-TAGGTCGCCAT---T-TAG-CG--ACCTG-A---CA--G-C-AGATG-T-GA-CTTGGAG
gi|1 : GATAT--AAAAATGAGGTCTG----CATT--T--CTG-GAGTT-TATTAAT-CGGGGG-----AAAGCTTATTTGAG-TATGCATATTCACCCAG-ACTA--G-AACAT-------AAG-A-TGCAACATGGGAGG---G--GATGGCCCTATATCCCGCGGA--ATTTA---CAATGAATTATTCATTTTCATCGTAATC-AA-----ACCGT-AAGACAT--ATACA--GATACTGGCA----ATGATTTGCTTTTTT-ACT----G-AAA-TTTTGT--AAGTCGTG-GG-TTATCGAT-AC-AAAA-TCTTATACTTTGGGCGA---TAAAC-ATAGGTT--GT-AAAT-GCGA-CT-A--AAAAATCTTTAGGAAACTGG-C-GACCAG-AAATAT-----T-TC-TAAGTCGCCAT---TGTAGTCG--ACCTG-ATTCTAACG-C-AAATGTT-GA-CTTG
gi|10 : gactcgtatagggagggacgggggagggggggatgcagggggggggggttaattctcgaagtaaccaaccaggcatttattagttcgcacctggtacgaacaagcaaatgtactgtaagattaaatatctaactccgttaatactttc-TAAAAATAAGGTCTG------------------A-TT-TATTAGC-C-ATGG-----AAAGCTGA--------A-GC-------CCCAG-CCTA--G-AAC-TTCCCATAAGT-A-TAC----TG---GG---GTGGATGG-CCTA-ATCCAGCGGG--TTTTA---CTGCGCAT--TTC--TTTC----CTATTTAA-T---AATAT-AA-ACAT-AATACA--GATACTG-------ATG--ATGAGTTTTT-ACT----AGAAA-TTTTGT--AAGTCGT--A---TGTG--T-ACAAAAA-TCTTTTACTGT-GGCAAG--TAGAA-AT--TTT--GT------------------------------AAA-TGG-C-GACCAG-AAATAT-----T-TC-TAGGTCGCCAT---T-TAG-CG--ACCTG-A---CA--G-C-AGAT--T-GA-CTTGGGGagcaat
gi|11 : ---G--GATGG-TTTA-ATCCAGTGGG--TTTTA---CAGCACAT--TTC--TTTC----CAATT-AAAT---AAAAT-AA-ACAT-AATACA--GATACTG-------ACG--TTGCTTTTTT-ACT----GAAAA-TTTTGT--AAGTCTT--AG-TTATC--T-AC-CAAA-TCTTGTACTTT-GGCGAG--TAGAA-AT--TTT--GT-AAATGGCGA-CT-A--AAAA--TTTTA--AAA-TGG-C-GACCAG-AAATAT-----T-TC-TAGGTCGTCAT---T-TAG-CG--ACCTG-A---CA--G-C-AGATG-T-GA-CTTGGAGca
gi|12 : tT-GGCAAC--TAGAA-AT--TTT--GT-AAATGGCGA-CG-A--GAAA--TTTTA--AAA-TGA-T-AACCAG-AAATAT-----T-TT-GAGGTTGCCAT---T-TAG-TG--ATCTG-A---TA--G-C-AAATG-T-GA-CTAGGAGca
gi|15 : ctttaattcttttaaa-TTATC--TTAC-AAAA-TCTTCTACCAT-GGGGAG--TAGAACAT--T----GT-AG-----------------------TA--AAG-T---C-GACCAG-AAATAT-----T-TC-TAGTTTGCCAT---T-TAG-CA--ACCTG-ta
gi|17 : -C-GGGG-----AAAGCTTATTT-AA-TA-AC-------CCCGT-ACTA--A-AAC-T-------AGT-G-TAC----g
gi|2 : ATAT-TAAAAATA--GTCTG----CATGG-C--C-G-GA-AT-TATTAATAC-GGGG-----AAAGCTTATTT-G--TA-GTAT-----CCCAG-ACTA-----AC-T-------AGTTG-TAC----TG---GAT--G--GATG--CCTA-ATCCAGCCGGAATTTAA---CAG-ACAT--TC----TTC----CAATT-T--T---AAGATGAA-ACAT-AATACA--GATACTGCCCACAGATG--TTGCTTTTTTTACTTTGCAGAAA-TTTTGT--AAGTCGT--AG-TTATC--G-AC-AAAA-TCTTATACTTT-GGCGAGTTTAGAA-AT--GTG--CTAAAATGGCGACCT-A--AAAA---TTTA--AAA-TGG-C-GACCAG-AAATAT-----T-TCTTAGG-CGCCATCCAT-TAG-CGACACCTG-A---CA--G-CAAAATG-TGGA-CATGGAGcag
gi|3 : GATATGTGAGAATGAGGT-TG----CATT--TTTC-G-GA-TT-TTCTAGT-C-GGGGC----AAAGCTGATT--AA--A-GCT------CCCAGCATTA--G-AAC-T-------AAT-GGTAA----TG---GAAATG--GATGG-CCTA-ATGCAGCGG---TTTTATCCCAG-ACAT--TTT----------CAATT-AA-TTGGGATAT-AA-ACATGAATA-ATTGATACTGG------ATG--TTGCTTTTTT-ACT----GAA----TTTGT--AAGT-GT--AGGTTATC--T-AC-AA---TCTTTTACTTT-GG--AG--TAGAA-AT--TTTTTGT-AAATGG-GA-CT-AGGAAAA--TTTGA--AAA-TGG-C-GACCAT-GATTATAAGTCT-TT-TAGGTTGCCAT---T-TAG-CG--AGCTG-A---CA--GAC-AGCTG-C-GATCTTGGAGc
gi|4 : ATAT-TAAAAATGAGGTCTG----CATT--T--C-GCGA-AT-TATTAAT-C-GGGG-----AAAAGCTATTT-AAATA-GC-------CCCAG-ACTAAGG-AAC-T-------AGT-G-TAC----TG---GAT--G--GATGG-CCTA-ATCCAGCGGG--ATTTA---CAGCA--T--TTC--TTTC----CAATT-AAAT---ATTGT-AA-ACAT-AATACA--GATACTG-------ATG--T-GCTTTTTT-ACA----GAAAAATTTTGTTTAAATCGTGTAT-TTATC--T-T---AAA-TCTTATACTTT-GGCGAG--TAGAA-AT--GTT--GT-AA--GGCAA-CTAA--AAAA--TTTTA--AAA-AGGCC-GACCAG-AAATAT-----T-TC-TAGTTCGCCAC---T-TAG-CG--ACCTGAA---CA--G-C-AGATG-T-GA-CTTGGAGc
gi|5 : acaGATAT-TAAAA-TGAGGTCTG----CATT--T----G-GA-AT-TATTAAT-C-GGG------AAAGCTTATTT-A--TA-GC-------CC-AG-ACTAA-G-AAC-T-------AGT-G-CAC----TG---GGA--G--GATGG-CCTA-ATCCAGCGGG--ATTTA---CAGCA--T--TTC--TTTC----CAATT-GA-T---AATGT-AA-ACAT-AATACA--GATACTG-------ATG--TTGCTTTTTT-ACT----GAAAA-TTTTGT--AAGTCGT--AG-TTATC--T-AC-AGAA-TATTATAC-TT-GGCGAG--T--AA-AT--GTT--GT-AAATGGCGA-CT-A--AAAA--TTTTT--AAA-TGG-CGGACCAGAAAATAT-----T-TC-TAGGTCGCCAT---T-TAG-CG--A-CTG-A----A--G-C-AAATG-T-GA-CTTGGAGcac
gi|6 : cTAT-TAAAAATGAGGTCTG----CATT--T--C-G-GA-TT-TAATAGT-C-GGGG-----AAAGCTGATTT-AA-AA-GC-------CCCAG-CATA--G-AAC-T-------AGT-G-TAC----TG---GAT--G--GATGG-CCTA-ATCCA-CGGG--TTTTA---CAGCACAT--TTC--TTTC----CAATTAAA-T---GATAT-AA-ACAT-AATACA--TAAACTG-------ATG--TTGCTTTTTT-ACT----GAAAA-TCTTGT--AAGTCAT--AA-TTATC--T-AC-AAAA-TCTTTTACTTT-GGCGAG--TAG---AT--TTT--GT-AAATGGCGA-CTAA--AAAA--TTTTA--AAA-TGG-C-GACCAG-AAATAT-----T-T--TAGGTCGCCAT---T-TAG-CG--A-----------------AGATG-C-GA-CTTGGAGcac
gi|7 : TAT-TAAAAATGAGGTCTG----CATT--T--C-G-GA-TT-TAATAGT-C-GGGG-----AAAGCTGATTT-AA-AA-GC-------CCCAG-CATA--G-AAC-T-------AGT-G-TAC----TG---GGAT-G--GATGG-CCTA-ATCCAGCGGG--TTTTA---CAGCACAT--TTC--TTTC----CAATT-AAAT---GATAT-AA-ACAT-AATACA--GATACTG-------ATG--TTGCTTTTTT-ACT----GAAAA-TCTTGT--AAGTCAT--AG-TTATC--T-AC-AAAA-TCTTTTACTTT-GGCGAG--TAGAA-AT--TTT--GT------------------------------AAA-TGG-C-GACCAT-AAATAT-----T-TT-TAGGTCGCCAT---T-TAG-CG--ACCTG-A---CA--G-C-A-ATG-C-GA-CTcac
gi|8 : GATAT-TAAAAATGAGGTCTG----CATT--T--C-G-GA-TT-TATTAGT-C-AGGG-----AAAGCTTATTT-AA-TA-GC-------CCCAC-CCTA--A-AAC-T-------AGT-G-------------------------G-CCTA-ATCCAGCAGG--TTTTA---CAGCACA-----C--TTT--------------T---AATAT-AA-ACAT-AAAACA--GATACTG-------ATG--TTGCTTTTTT-ACT----GAAAA-TTTTGT--AAGTCGT--AG-TTATC--T-AC-AAAA-TCTTATACTTT-GGCGAG--TAGAA-AT--TTT--GT-AAATGGTGA-CT-A--GAAA--TTTTA--AAA-TGG-C-GACCAG-AAATAT-----T-TC-TAGGTCGCCAT---T-TAG-TG--ACCTG-A---CA--G-C-AGATG-T-GA-CTTGGAGgtgagca
gi|9 : tTAT-TAAAA-TA--GTCTGTGAACATTACT--C-G--A-TTATATCAAT-C-GAGGCGGAAGAAGCTT--TT-AA-TA-GC-------C---A-AC-A--GTAAT-C---------T-G-TAC----TG---GA---AT-GGTGG-C-TA-ATCC--CTGG--ATTTA---CG---CAT--TTC--TTGC----CACTT-AA-T---AATGT-AA-TCAT-AATACA--GATACT--------AT---TTGCTTTTTTCACT----GAAAA--TTTGT---AGTCGT--AG-TTATC--TGAC-AAAATTCATATATTT---GCGAG--TA-AA-AT--GTT--GT-AAATGGCGA-CT----GAAA--TTTCA--AAA-TGG-C-GACCAG-AAATAT-----TCTC----GTCGCCAT---T-TAG-CG--ACAT--A---CA--G-C-
blockSeqs : G TGAA TTTC C . A A . CGGAA . AAT . AT C AGG . TCCCATA T G . . AAATG . . AAT TCC C C . . . AATTGG G . G TT CCCACAG . T TTGC A TT GT G . T A T T . TT C T TT A A C AGG T . . C G A AAGTC C T CCA . . AC A . . A A . G T
blockSeqs : . . ACTC . . . . . C . AT . T . AG . . . . . . GGTG . . T . C C . . . TAAT . . . . G . C . . . . . . G . . G . . . T . . A . AA T . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . GCC . . . . . . . AA . . . GT . . . . . . GATG . . T . C C . . . AAAT . . . . . . . . . . . . . . . . C . . . T . . A . AA T . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . TC . . . . . . . AA . . . G . . . . . . ATG . . T . C C . . . AAAT . . . . . . . . . . . . . . . . A . . . T . . A . A T . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . TC . . . . . . . AT . . . A . . . . . . ATG . . A . C C . . . AAAT . . . . . . . . . . . . . . . . T . . . G . . A . A T . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . TC . . . . . . . AT . . . G . . . . . . GAG . . A . C C . . . AAAT . . . . . . . . . . . . . . . . A . . . T . . A . A T . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . TC . . . . . . . T . . . G . . . . . . ATG . . T . C C . . . GAT . . . . . . . . . . . . . . . . A . . . G . . A . A T . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . T . . . . . . . A . . . G . . . . . . AAT . . T . . C . . . AAT . . . . . . . . . . . . . . . . T . . . G . . A . A T . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . T . . . A . . . . . . . . . T . . . . . . TT . . . . . . . . . . . . . . . . T . . . T . . . . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . A . . . . . . T . . . . . . . . . . . . . . . . A . . . T . . . . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . A . . . T . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . G . . . . . . . . . . . . . . . . . . .
blockSeqCons : TC***** ******* **** *** ATG**** ** ** **** AAAT**** ******* ** ** ** T** T** ** *** **
originalCons : NGATAT-TAAAAATGAGGTCTG----CATT--T--C-G-GA-TT-TATTAGT-C-GGGG-----AAAGCTTATTT-AA-TA-GC-------CCCAG-ACTA--G-AAC-T-------AGT-G-TAC----TG---GG---G--GATGG-CCTA-ATCCAGCGGG--TTTTA---CAGCACAT--TTC--TTTC----CAATT-AA-T---AATAT-AA-ACAT-AATACA--GATACTG-------ATG--TTGCTTTTTT-ACT----GAAAA-TTTTGT--AAGTCGT--AG-TTATC--T-AC-AAAA-TCTTNTACTTT-GGCGAG--TAGAA-AT--TTT--GT-AAATGGCGA-CT-A--AAAA--TTTTA--AAA-TGG-C-GACCAG-AAATAT-----T-TC-TAGGTCGCCAT---T-TAG-CG--ACCTG-A---CA--G-C-AGATG-T-GA-CTTGGAG
finalCons : NGATAT-TAAAAATGAGGTCTG----CATTTC-----G-GA-TT-TATTAGT-C-GGGG-----AAAGCTTATTT-AA-TA-GC-------CCCAG-ACTA--G-AAC-T-------AGT-G-TAC----TG---GATG----GATGG-CCTA-ATCCAGCGGG--TTTTA---CAGCACAT--TTC--TTTC----CAATTAAAT----AATAT-AA-ACAT-AATACA--GATACTG-------ATG--TTGCTTTTTT-ACT----GAAAA-TTTTGT--AAGTCGT--AG-TTATC--T-AC-AAAA-TCTTNTACTTT-GGCGAG--TAGAA-ATT--TT--GT-AAATGGCGA-CT-A--AAAAT--TTTA--AAA-TGG-C-GACCAG-AAATAT-----T-TC-TAGGTCGCCAT---T-TAG-CG--ACCTG-A---CA--G-C-AGATG-T-GA-CTTGGAG
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|13 ): CGCTGGGGGGGGGGGGGGGGGGGGGGGGGGGGAGGGGTGTTAAAATTCGAAGTAACTACCCATGTCGCGCCTGCGCACAAACAAATCGTACTGAAATTAATTCTAATCTAACTCTC
Unaligned ( gi|14 ): CGGAGGGGGGTTAATTCGACAGACCACCCATTCTAGCGCCCCTTACGACAAGCCAATGTACTGAAGATTTTTCCTAACTCGTATACTTT
Unaligned ( gi|16 ): AAAGTACGCACAACCATTTAGTCATACCTGTACGACAAGCAGTGTCTGAAGATTTAAATTACTTGTATACTTA
Unaligned ( gi|18 ): GACAGGCAAGTGTACTGAAGATGAATTCTAACTTGTATACTTA
Alignments
lowQualScore : 1111111 11111 2222222 1111111 11111 2222222
lowQualScore : 4 0 0 8888 1111111 4 4 4 3 3 22222 3 999 3 0000000 3 9999 3 1111111 3 3 7777 99999 3 3 555 666 7 55 55 7777 6 55 3 3 55 1111111 55 7 7777 3 55 55 3 3 44 6 3 3 1 3 44 3 444 44 3 2 0 3 8888 6666 44 3 3 3 3 77777 3 3 555 3 3 44 0 3 555 44 3 3 0 3 3 3
lowQualScore : . . . .... ....... . . . . . ..... . ... . ....... . .... . ....... . . .... ..... . . ... ... . .. .. .... . .. . . .. ....... .. . .... . .. .. . . .. . . . . . .. . ... .. . . . . .... .... .. . . . . ..... . . ... . . .. . . ... .. . . . . . .
lowQualScore : 0 8 8 5555 4444444 0 0 0 6 6 77777 6 555 6 5555555 6 7777 6 8888888 6 6 7777 77777 6 6 555 444 4 00 00 7777 6 00 6 6 00 8888888 00 3 7777 6 00 00 6 3 66 7 3 3 0 1 22 1 555 22 1 2 8 1 1111 0000 22 1 1 1 1 77777 1 1 444 1 1 22 8 1 888 66 3 3 4 6 6 6
consensus : NGATAT-TAAAAATGAGGTCTG----CATT--T--C-G-GA-TT-TATTAGT-C-GGGG-----AAAGCTTATTT-AA-TA-GC-------CCCAG-ACTA--G-AAC-T-------AGT-G-TAC----TGG--A--TGGATGG-CCTA-ATCCAGCGGG--TTTTA---CAGCACAT--TTC--TTTC----CAATTAAATA--ATAT-AAACAT-AATACA--GATACTG-------ATG--TTGCTTTTTT-ACT----G-AAAATTTTG--TAAGTC--GT-AG-TTATC--T-AC-AAAAT-CTTNTACTTT-GGCGAG--TAGAA-AT--TTT--GT-AAATGGCGA-CT-A--AAAA--TTTTA--AAA-TGG-C-GACCAG-AAATAT-----T-TC-TAGGTCGCCAT---T-TAG-CG--ACCTG-A---CA--G-C-AGATG-T-GA-CTTGGAG
Reference ( family-924 ) : NGATAT-TAAAAATGAGGTCTG----CATT--T--C-G-GA-TT-TATTAGT-C-GGGG-----AAAGCTTATTT-AA-TA-GC-------CCCAG-ACTA--G-AAC-T-------AGT-G-TAC----TGG--A--TGGATGG-CCTA-ATCCAGCGGG--TTTTA---CAGCACAT--TTC--TTTC----CAATTAAATA--ATAT-AAACAT-AATACA--GATACTG-------ATG--TTGCTTTTTT-ACT----G-AAAATTTTG--TAAGTC--GT-AG-TTATC--T-AC-AAAAT-CTTNTACTTT-GGCGAG--TAGAA-AT--TTT--GT-AAATGGCGA-CT-A--AAAA--TTTTA--AAA-TGG-C-GACCAG-AAATAT-----T-TC-TAGGTCGCCAT---T-TAG-CG--ACCTG-A---CA--G-C-AGATG-T-GA-CTTGGAG
gi|1 : GATAT--AAAAATGAGGTCTG----CATT--T--CTG-GAGTT-TATTAAT-CGGGGG-----AAAGCTTATTTGAG-TATGCATATTCACCCAG-ACTA--G-AACAT-------AAG-A-TGCAACATGGGAG--GGGATGGCCCTATATCCCGCGGA--ATTTA---CAATGAATTATTCATTTTCATCGTAATCAAACC--GTA--AGACAT--ATACA--GATACTGGCA----ATGATTTGCTTTTTT-ACT----G--AAATTTTG--TAAGTC--GTGGG-TTATCGAT-AC-AAAAT-CTTATACTTTGGGCGA---TAAAC-ATAGGTT--GT-AAAT-GCGA-CT-A--AAAAATCTTTAGGAAACTGG-C-GACCAG-AAATAT-----T-TC-TAAGTCGCCAT---TGTAGTCG--ACCTG-ATTCTAACG-C-AAATGTT-GA-CTTG
gi|10 : gactcgtatagggagggacgggggagggggggatgcagggggggggggttaattctcgaagtaaccaaccaggcatttattagttcgcacctggtacgaacaagcaaatgtactgtaagattaaatatctaactccgttaatactttc-TAAAAATAAGGTCTG------------------A-TT-TATTAGC-C-ATGG-----AAAGCTGA--------A-GC-------CCCAG-CCTA--G-AAC-TTCCCATAAGT-A-TAC----TGG--GG-TGGATGG-CCTA-ATCCAGCGGG--TTTTA---CTGCGCAT--TTC--TTTC----CTATTTAATA--ATAT-AAACAT-AATACA--GATACTG-------ATG--ATGAGTTTTT-ACT----A-GAAATTTTG--TAAGTC--GT-A---TGTG--T-ACAAAAAT-CTTTTACTGT-GGCAAG--TAGAA-AT--TTT--GT------------------------------AAA-TGG-C-GACCAG-AAATAT-----T-TC-TAGGTCGCCAT---T-TAG-CG--ACCTG-A---CA--G-C-AGAT--T-GA-CTTGGGGagcaat
gi|11 : --TGGATGG-TTTA-ATCCAGTGGG--TTTTA---CAGCACAT--TTC--TTTC----CAATTAAATA--AAAT-AAACAT-AATACA--GATACTG-------ACG--TTGCTTTTTT-ACT----G-AAAATTTTG--TAAGTC--TT-AG-TTATC--T-AC-CAAAT-CTTGTACTTT-GGCGAG--TAGAA-AT--TTT--GT-AAATGGCGA-CT-A--AAAA--TTTTA--AAA-TGG-C-GACCAG-AAATAT-----T-TC-TAGGTCGTCAT---T-TAG-CG--ACCTG-A---CA--G-C-AGATG-T-GA-CTTGGAGca
gi|12 : T-GGCAAC--TAGAA-AT--TTT--GT-AAATGGCGA-CG-A--GAAA--TTTTA--AAA-TGA-T-AACCAG-AAATAT-----T-TT-GAGGTTGCCAT---T-TAG-TG--ATCTG-A---TA--G-C-AAATG-T-GA-CTAGGAGca
gi|15 : ctttaattcttttaaa-TTATC--TTAC-AAAAT-CTTCTACCAT-GGGGAG--TAGAACAT--T----GT-AG-----------------------TA--AAG-T---C-GACCAG-AAATAT-----T-TC-TAGTTTGCCAT---T-TAG-CA--ACCTG-ta
gi|17 : -C-GGGG-----AAAGCTTATTT-AA-TA-AC-------CCCGT-ACTA--A-AAC-T-------AGT-G-TAC----g
gi|2 : ATAT-TAAAAATA--GTCTG----CATGG-C--C-G-GA-AT-TATTAATAC-GGGG-----AAAGCTTATTT-G--TA-GTAT-----CCCAG-ACTA-----AC-T-------AGTTG-TAC----TGG--A--TGGATG--CCTA-ATCCAGCCGGAATTTAA---CAG-ACAT--TC----TTC----CAATTT--TA--AGATGAAACAT-AATACA--GATACTGCCCACAGATG--TTGCTTTTTTTACTTTGCA-GAAATTTTG--TAAGTC--GT-AG-TTATC--G-AC-AAAAT-CTTATACTTT-GGCGAGTTTAGAA-AT--GTG--CTAAAATGGCGACCT-A--AAAA---TTTA--AAA-TGG-C-GACCAG-AAATAT-----T-TCTTAGG-CGCCATCCAT-TAG-CGACACCTG-A---CA--G-CAAAATG-TGGA-CATGGAGcag
gi|3 : GATATGTGAGAATGAGGT-TG----CATT--TTTC-G-GA-TT-TTCTAGT-C-GGGGC----AAAGCTGATT--AA--A-GCT------CCCAGCATTA--G-AAC-T-------AAT-GGTAA----TGG--AAATGGATGG-CCTA-ATGCAGCGG---TTTTATCCCAG-ACAT--TTT----------CAATTAATTGGGATAT-AAACATGAATA-ATTGATACTGG------ATG--TTGCTTTTTT-ACT----G-AA---TTTG--TAAGT---GT-AGGTTATC--T-AC-AA--T-CTTTTACTTT-GG--AG--TAGAA-AT--TTTTTGT-AAATGG-GA-CT-AGGAAAA--TTTGA--AAA-TGG-C-GACCAT-GATTATAAGTCT-TT-TAGGTTGCCAT---T-TAG-CG--AGCTG-A---CA--GAC-AGCTG-C-GATCTTGGAGc
gi|4 : ATAT-TAAAAATGAGGTCTG----CATT--T--C-GCGA-AT-TATTAAT-C-GGGG-----AAAAGCTATTT-AAATA-GC-------CCCAG-ACTAAGG-AAC-T-------AGT-G-TAC----TGG--A--TGGATGG-CCTA-ATCCAGCGGG--ATTTA---CAG--CAT--TTC--TTTC----CAATTAAATA--TTGT-AAACAT-AATACA--GATACTG-------ATG---TGCTTTTTT-ACA----GAAAAATTTTGTTTAAATCGTGT-AT-TTATC--T----TAAAT-CTTATACTTT-GGCGAG--TAGAA-AT--GTT--GT-AA--GGCAA-CTAA--AAAA--TTTTA--AAA-AGGCC-GACCAG-AAATAT-----T-TC-TAGTTCGCCAC---T-TAG-CG--ACCTGAA---CA--G-C-AGATG-T-GA-CTTGGAGc
gi|5 : acaGATAT-TAAAA-TGAGGTCTG----CATT--T----G-GA-AT-TATTAAT-C-GGG------AAAGCTTATTT-A--TA-GC-------CC-AG-ACTAA-G-AAC-T-------AGT-G-CAC----TGG--G--AGGATGG-CCTA-ATCCAGCGGG--ATTTA---CAGCA--T--TTC--TTTC----CAATTGA-TA--ATGT-AAACAT-AATACA--GATACTG-------ATG--TTGCTTTTTT-ACT----G-AAAATTTTG--TAAGTC--GT-AG-TTATC--T-AC-AGAAT-ATTATAC-TT-GGCGAG--T--AA-AT--GTT--GT-AAATGGCGA-CT-A--AAAA--TTTTT--AAA-TGG-CGGACCAGAAAATAT-----T-TC-TAGGTCGCCAT---T-TAG-CG--A-CTG-A----A--G-C-AAATG-T-GA-CTTGGAGcac
gi|6 : cTAT-TAAAAATGAGGTCTG----CATT--T--C-G-GA-TT-TAATAGT-C-GGGG-----AAAGCTGATTT-AA-AA-GC-------CCCAG-CATA--G-AAC-T-------AGT-G-TAC----TGG--A--TGGATGG-CCTA-ATCCA-CGGG--TTTTA---CAGCACAT--TTC--TTTC----CAATTAAATG--ATAT-AAACAT-AATACA--TAAACTG-------ATG--TTGCTTTTTT-ACT----G-AAAATCTTG--TAAGTC--AT-AA-TTATC--T-AC-AAAAT-CTTTTACTTT-GGCGAG--TAG---AT--TTT--GT-AAATGGCGA-CTAA--AAAA--TTTTA--AAA-TGG-C-GACCAG-AAATAT-----T-T--TAGGTCGCCAT---T-TAG-CG--A-----------------AGATG-C-GA-CTTGGAGcac
gi|7 : TAT-TAAAAATGAGGTCTG----CATT--T--C-G-GA-TT-TAATAGT-C-GGGG-----AAAGCTGATTT-AA-AA-GC-------CCCAG-CATA--G-AAC-T-------AGT-G-TAC----TGGG-A--TGGATGG-CCTA-ATCCAGCGGG--TTTTA---CAGCACAT--TTC--TTTC----CAATTAAATG--ATAT-AAACAT-AATACA--GATACTG-------ATG--TTGCTTTTTT-ACT----G-AAAATCTTG--TAAGTC--AT-AG-TTATC--T-AC-AAAAT-CTTTTACTTT-GGCGAG--TAGAA-AT--TTT--GT------------------------------AAA-TGG-C-GACCAT-AAATAT-----T-TT-TAGGTCGCCAT---T-TAG-CG--ACCTG-A---CA--G-C-A-ATG-C-GA-CTcac
gi|8 : GATAT-TAAAAATGAGGTCTG----CATT--T--C-G-GA-TT-TATTAGT-C-AGGG-----AAAGCTTATTT-AA-TA-GC-------CCCAC-CCTA--A-AAC-T-------AGT-G----------------------G-CCTA-ATCCAGCAGG--TTTTA---CAGCACA-----C--TTT-------------TA--ATAT-AAACAT-AAAACA--GATACTG-------ATG--TTGCTTTTTT-ACT----G-AAAATTTTG--TAAGTC--GT-AG-TTATC--T-AC-AAAAT-CTTATACTTT-GGCGAG--TAGAA-AT--TTT--GT-AAATGGTGA-CT-A--GAAA--TTTTA--AAA-TGG-C-GACCAG-AAATAT-----T-TC-TAGGTCGCCAT---T-TAG-TG--ACCTG-A---CA--G-C-AGATG-T-GA-CTTGGAGgtgagca
gi|9 : tTAT-TAAAA-TA--GTCTGTGAACATTACT--C-G--A-TTATATCAAT-C-GAGGCGGAAGAAGCTT--TT-AA-TA-GC-------C---A-AC-A--GTAAT-C---------T-G-TAC----TGG--AA-TGG-TGG-C-TA-ATCC--CTGG--ATTTA---CG---CAT--TTC--TTGC----CACTTAA-TA--ATGT-AATCAT-AATACA--GATACT--------AT---TTGCTTTTTTCACT----G-AAAATTT-G--TA-GTC--GT-AG-TTATC--TGAC-AAAATTCATATATTT---GCGAG--TA-AA-AT--GTT--GT-AAATGGCGA-CT-G--AAA---TTTCA--AAA-TGG-C-GACCAG-AAATAT-----TCTC----GTCGCCAT---T-TAG-CG--ACAT--A---CA--G-C-
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|13 ): CGCTGGGGGGGGGGGGGGGGGGGGGGGGGGGGAGGGGTGTTAAAATTCGAAGTAACTACCCATGTCGCGCCTGCGCACAAACAAATCGTACTGAAATTAATTCTAATCTAACTCTC
Unaligned ( gi|14 ): CGGAGGGGGGTTAATTCGACAGACCACCCATTCTAGCGCCCCTTACGACAAGCCAATGTACTGAAGATTTTTCCTAACTCGTATACTTT
Unaligned ( gi|16 ): AAAGTACGCACAACCATTTAGTCATACCTGTACGACAAGCAGTGTCTGAAGATTTAAATTACTTGTATACTTA
Unaligned ( gi|18 ): GACAGGCAAGTGTACTGAAGATGAATTCTAACTTGTATACTTA