lowQualScore : 3 111111111111 1111111 222222
lowQualScore : 555 33 33 555 6666 3 333 8888888 5 0 1 66666 2 5 2 2 2 5555 2 3 444444444444 3333333 888 33 2 9999999 3 111111 4 9 4
lowQualScore : ... .. .. ... .... . ... ....... . . . ..... . . . . . .... . . ............ ....... ... .. . ....... . ...... . . .
lowQualScore : 000 99 99 444 5555 8 111 1111111 0 5 3 77777 7 3 5 5 5 3333 5 8 000000000000 0000000 999 99 9 3333333 6 555555 0 0 4
consensus : ACAGTGCTCCAAGT---TGCGA--GT--AAAACG---GTCG----CATATGCGACTAGAAAATT-G-ATTT-------TG-CGACTAGAGATTAAAA-----TCAA-GTCGC-ATTTT-CG-CG-AG----TGGAG-AAAATCCG-GGC-C-TCG--G--ACTCCATTAAAA---T---ATAA---TCGGGATCGAAAG--T-T-------TGAATAA-ATATTT------T-AATCAAA-GATGGCGGA
Reference ( gi|4 ) : ACAGTGCTCCAAGT---TGCGA--GT--AAAACG---GTCG----CATATGCGACTAGAAAATT-G-ATTT-------TG-CGACTAGAGATTAAAA-----TCAA-GTCGC-ATTTT-CG-CG-AG----TGGAG-AAAATTCGCGGC-C-CCG--G--ACTCCATTAAAA---T---ATAA---TCGGGATCGAAAG--T-T-------TGAATAA-ATATTT------T-AATCAAA-GATGGCGGACC
gi|7 : ACAGCGTTCCAAGT---TGCGACTAT--AAATTG---GTCA----CCTTTGCGACTAGAAAATC-A-ATTT-------TG-CAAC------------------CAA-TTCGCTATTTT--G-TG-AG----TGGAG-AAAATTTG-GGCGC-CTG--G---------TAAAATTTT---ATAA---TTGAGATCGAATG--T-T-------TA---AA-ACATTT------A-AA
gi|15 : ACAGCACTGCAAGT---TGCAA--GT--AAAATG---GTCG----CAT----------------------T-------TG-CGATTAGAAATTATAA-----TCAA-TTCACAATTTT-TG-TA-AA----TGGAG-AAAATTTGGGTC-T-CCG--G---------TAAAA---T---TTTACTGTCAGGATTGACAG--T-T-------TGggcaatcatgatccaacaaattagtg
gi|2 : CAGTGCTCCAAGT---TGCGA--GT--AAAACG---GTCG----CATATGCGACTAGACAATT-G-ATTT-------TA-CGACTAGAGATTAAAA-----TCAA-GTTGC-GTTTT-CG-TG-AG----TGGAG-AAAATCCG-GAC-C-TCG--G--ACTCCATTAAAA---T---ATAA---TCGGGATCGAAAG--T-T-------TGAATAA-ATATTT------T-AATCAAA-GATGACGGAcctccaaaaacaaactttaat
gi|13 : agCAGTGCTCCAAGT---TGCGA--GT--AAAACG---GTCG----CATATGCGACTAGAAAATT-G-ATTT-------TG-CGACTAGAGATTAAAA-----TCAA-GTCGC-ATTTT-CG-CG-AG----TGGGG-AAAATTCG-GGC-C-CCG--G--ACTCCATCAAAA---T---ATAA---TCGGGATCGAAAG--T-T-------TGAAacaa
gi|1 : CAGTGCTCCCAGT---TGCGA--GTTAAAAACACGCGTCG----CATATGCGACCTGAAAATT-G-ATTT-------TGCCGA-TATAGATTAAAA-----TCAACGTCGC-ATTTT-CGCCG-AG----TGGAG-AAAATC--CGGC-C-TTG--G--ACTCCATTAAAA---T---ATAA---TC-GAATCGAAAGGTT-T-------TGAATAACATATTT------T-AATCAAAGGATGGCGG
gi|20 : CAGTGCTCCAAGTAGTTGCGA--CT--AAAACG---GTCG----CATATGCGACTAGAAAATT-gaacaacaa
gi|22 : CAGTGCTCCAAGT---TGCGA--GT--AAAAC
gi|8 : atgtttgctatgAGTGCTCCAAGT---TGCGA--GT--AAAACG---GTCG----CATATGCGACTAGAAAATT-G-ATTT-------TG-CGACTAGAGATTAAAA-----TCAA-GTCGC-ATTAT-CG-CG-AG----TGGAG-AAAATCCG-GGC-C-TTG--G--ACTCCATCAAAA---T---ATAA---TCGGAATCGAAAG--N-C-------T
gi|6 : AGTGCTCCAAGT---TGTGA--AT--AAAATG---GTCG----CATTTGAGACCAGAAAATT-T-ATTT-------TG-CAACTGAAGATTATAA-----TCAA-GCTGC-ATTTT-TG-GA-AT----TGGGGCAAAATTCG-GAC------------CTCCATTAAAATTTT---ATAT---TTGGGATCGAAAG--A-T-------TGAATAA-ATATTT------T-AATC-AA-GATGGCAGcataatctaaaatgtcccaac
gi|12 : AGCGCTCCCAGT---TTCGA--CT--AAATTG---GTTG----CATTTGGGACTAGAAAATC-A-ATTT-------TG-CAAACAGAAATTGTAACCAGGCCAA-GTCGC-ATTTT-TG-TG-AGTGCATGGGG-AAAATCCG---------G--G--ACTCTAGTATAA---T---ggaaacg
gi|19 : AGTGCTCCAAGC---TGGGA--GT--AAAACG---GTCG----CATTTGTGACCAGAAAATT-G-ATTT-------TA-CAACttccgtaaattatgcaatctaa
gi|3 : GTGCTC-AAGT---TGCGA--GT--AAAACG---GTCGATCGCATATGCGACTAGAAAATTGG-ATTT-------TGTCAACAAGAGAATTAAA-----TCAA-GTCGC-ATTTC-GG-CGAAG----TGGCG-AAAATCCG-GGC-A-TTA--G--ACTC--TTA----------ATAA---TCAGAATCAAAGG--T-T-------TGAAT-A-ATATTTTACTCGT-AATCAAG-GATGGCGGA
gi|5 : TGCTCCAAGT---TGTGA--GT--AA--CG---GTCG----CATATGCGACTAGAAAATT-TTATTT-------TG-CGACTAAAGATTAAAA-----TCAA-GTCGC-ATTTT-TG-CG-AG----TGAAG-AAAATT-GGGGC-C-TTG--G--ACTCCATTAAAA---T---AAAATT-TTGGAATTGAAAG--T-T-------TGAATAC-ATATTT------TAAATCAAA-GATGGCGGAaaa
gi|14 : CTCCAAGT---TGCGA--GT--AAAACA---ATCA----CATTTGCAACCAGAAAATT-C-ATTT-------TG-TAACTAGAGATTATAA-----TCTA-GTTGC-ATTTT-T--CA-AG----TGAAG-AAAATTCG-AGC------------CTTCAGTAAAA---TTTAGTAA---TCGAGATCAAAAG--T-T-------TGAATGA-ATacaa
gi|16 : gcaATAAGCAACCAAAAAAGT-G-ATTT-------TG-TGATAAGGGATTAAAA-----TCAA-GTCAC-ATTTT-CA-C--AG----TAGAG-AAAA-TCA-GGC-C-TCGATG--ACTCCATT---A---T---ATAT---TTTATATTACAAG--T-T-------TGAATAA-ATGTTT------T-AATC-AA-GATGGC
gi|9 : GCGACTAGAAAATT-G-ATTT-------TG-CGACAAGAGATTAAAA-----TCAA-GTCGC-ATTTTTCG-CG-AG----TGGAG-AAAATCCG-GGC-CTTTG--G--ACTCCATTAGAA---T---ATAA---TCAGAATCAAAAG--T-T-------TGAATAT-ATATTTTACTG-T-AATCAAA-GATGGCGGAacggta
gi|11 : GACTAGAAAATT-G-ATTTATCATTTTG-TGAATAGAGATTTTTA-----TGAA-GTTGC-ATTTT-CA-CA-AG----TTGAG-AAAATTCA-GGC-T-TCT--A--AC--CATCTAAA---TTTTATGA---GCGGGATCGAAAG--TGTGTCACAGTGAATAA-ATATTT------T-AAT-GAA-GATGGCGGacaacaata
gi|21 : ACTAGAAAATT-G-ATTT-------TG-CGACTAGAGATTGAAA-----TCAA-GTCGC-ATTTgga
gi|10 : TTT-CG-CG-AG----TGGAG-AAAATCCG-GGC-C-TTG--GTTAATCCATTAAAA---T---ATA
gi|17 : tcTTT-CG-CG-AG----TGGAG-AAAATCCG-GGC-C-TTG--GTTAATCCATTAAAA---T---tattcgtgtaaaacagaaaatacttatcatatcgagcacaaaaaaattggaatataaactaagttttaagaaacagatggcgtgaaaaacaacaaatatttttaat
gi|18 : tagaaatattttaatttatatgacgacatacgaagagatgattaaaaaaacaaaggatcttcatggtcCCATTAAAA---TTCTATGA---TCGGGATCGAAAG--T-T-------TGAATAA-ATATTT------T-AATC-AT-CATGGCGG
Alignments
lowQualScore : 1111111 111111
lowQualScore : 444 33 33 555 6666 2 2 2 7777777 4 0 66666 2 5 2 2 2 5555 2 0 2 333 22 33 777 3333333 888 33 2 8888888 3 999999 3 7 4
lowQualScore : ... .. .. ... .... . . . ....... . . ..... . . . . . .... . . . ... .. .. ... ....... ... .. . ....... . ...... . . .
lowQualScore : 777 77 77 000 1111 9 2 4 6666666 7 6 22222 5 0 5 4 4 0000 4 5 4 000 88 44 000 0000000 333 77 7 7777777 3 555555 6 2 0
consensus : ACAGTGCTCCAAGT---TGCGA--GT--AAAACG---GTCG----CATATGCGACTAGAAAATT-G-ATTT-------TG-CGACTAGAGATTAAAA-----TCAA-GTCGC-A-TTTTCG-CG-AG----TGGAG-AAAATCCG-GGC-C-T-CG--G--ACTCCATTAAAA---T---ATAA---TCGGGATCGAAAG--T-T-------TGAATAA-ATATTT------T-AATCAAA-GATGGCGGA
Reference ( family-923 ) : ACAGTGCTCCAAGT---TGCGA--GT--AAAACG---GTCG----CATATGCGACTAGAAAATT-G-ATTT-------TG-CGACTAGAGATTAAAA-----TCAA-GTCGC-A-TTTTCG-CG-AG----TGGAG-AAAATCCG-GGC-C-T-CG--G--ACTCCATTAAAA---T---ATAA---TCGGGATCGAAAG--T-T-------TGAATAA-ATATTT------T-AATCAAA-GATGGCGGA
gi|1 : CAGTGCTCCCAGT---TGCGA--GTTAAAAACACGCGTCG----CATATGCGACCTGAAAATT-G-ATTT-------TGCCGA-TATAGATTAAAA-----TCAACGTCGC-A-TTTTCGCCG-AG----TGGAG-AAAATCC--GGC-C-T-TG--G--ACTCCATTAAAA---T---ATAA---TC-GAATCGAAAGGTT-T-------TGAATAACATATTT------T-AATCAAAGGATGGCGG
gi|10 : TTTCG-CG-AG----TGGAG-AAAATCCG-GGC-C-T-TG--GTTAATCCATTAAAA---T---ATAgaacaacaa
gi|11 : tcGACTAGAAAATT-G-ATTTATCATTTTG-TGAATAGAGATTTTTA-----TGAA-GTTGC-A-TTTTCA-CA-AG----TTGAG-AAAATTCA-GGC-T-T-CT--A--A--CCATCTAAATTTT---ATGA---GCGGGATCGAAAG--TGTGTCACAGTGAATAA-ATATTT------T-AAT-GAA-GATGGCGGtattcgtgtaaaacagaaaatacttatcatatcgagcacaaaaaaattggaatataaactaagttttaagaaacagatggcgtgaaaaacaacaaatatttttaat
gi|12 : AGCGCTCCCAGT---TTCGA--CT--AAATTG---GTTG----CATTTGGGACTAGAAAATC-A-ATTT-------TG-CAAACAGAAATTGTAACCAGGCCAA-GTCGC-A-TTTTTG-TG-AGTGCATGGGG-AAAATCCG-GGA-C-T-Cgga
gi|13 : CAGTGCTCCAAGT---TGCGA--GT--AAAACG---GTCG----CATATGCGACTAGAAAATT-G-ATTT-------TG-CGACTAGAGATTAAAA-----TCAA-GTCGC-A-TTTTCG-CG-AG----TGGGG-AAAATTCG-GGC-C-C-CG--G--ACTCCATCAAAA---T---ATAA---TCGGGATCGAAAG--T-T-------TGAAtagtataatttccgtaaattatgcaatctaa
gi|14 : CTCCAAGT---TGCGA--GT--AAAACA---ATCA----CATTTGCAACCAGAAAATT-C-ATTT-------TG-TAACTAGAGATTATAA-----TCTA-GTTGC-A-TTTTT--CA-AG----TGAAG-AAAATTCG-AGC-------------CTTCAGTAAAA---TTTAGTAA---TCGAGATCAAAAG--T-T-------TGAATGA-AT
gi|15 : gcaACAGCACTGCAAGT---TGCAA--GT--AAAATG---GTCG----CAT----------------------T-------TG-CGATTAGAAATTATAA-----TCAA-TTCACAA-TTTTTG-TA-AA----TGGAG-AAAATTTG-GGT-C-TCCG--G---------TAAAA---T---TTTACTGTCAGGATTGACAG--T-T-------TG
gi|16 : ATAAGCAACCAAAAAAGT-G-ATTT-------TG-TGATAAGGGATTAAAA-----TCAA-GTCAC-A-TTTTCA-C--AG----TAGAG-AAAAT-CA-GGC-C-T-CGATG--ACTCCATT---A---T---ATAT---TTTATATTACAAG--T-T-------TGAATAA-ATGTTT------T-AATC-AA-GATGGCcctccaaaaacaaactttaat
gi|17 : TTTCG-CG-AG----TGGAG-AAAATCCG-GGC-C-T-TG--GTTAATCCATTAAAA---T---acggta
gi|18 : tagaaatattttaatttatatgacgacatacgaagagatgattaaaaaaacaaaggatcttcatggtcCCATTAAAA---TTCTATGA---TCGGGATCGAAAG--T-T-------TGAATAA-ATATTT------T-AATC-AT-CATGGCGG
gi|19 : cAGTGCTCCAAGC---TGGGA--GT--AAAACG---GTCG----CATTTGTGACCAGAAAATT-G-ATTT-------TA-CAACggcaa
gi|2 : CAGTGCTCCAAGT---TGCGA--GT--AAAACG---GTCG----CATATGCGACTAGACAATT-G-ATTT-------TA-CGACTAGAGATTAAAA-----TCAA-GTTGC-G-TTTTCG-TG-AG----TGGAG-AAAATCCG-GAC-C-T-CG--G--ACTCCATTAAAA---T---ATAA---TCGGGATCGAAAG--T-T-------TGAATAA-ATATTT------T-AATCAAA-GATGACGGA
gi|20 : agCAGTGCTCCAAGTAGTTGCGA--CT--AAAACG---GTCG----CATATGCGACTAGAAAATT-acaa
gi|21 : ACTAGAAAATT-G-ATTT-------TG-CGACTAGAGATTGAAA-----TCAA-GTCGC-A-TTT
gi|22 : CAGTGCTCCAAGT---TGCGA--GT--AAAAC
gi|3 : atgtttgctatgGTGCTC-AAGT---TGCGA--GT--AAAACG---GTCGATCGCATATGCGACTAGAAAATTGG-ATTT-------TGTCAACAAGAGAATTAAA-----TCAA-GTCGC-A-TTTCGG-CGAAG----TGGCG-AAAATCCG-GGC-A-T-TA--G--ACTC--TTA----------ATAA---TCAGAATCAAAGG--T-T-------TGAAT-A-ATATTTTACTCGT-AATCAAG-GATGGCGGA
gi|4 : ACAGTGCTCCAAGT---TGCGA--GT--AAAACG---GTCG----CATATGCGACTAGAAAATT-G-ATTT-------TG-CGACTAGAGATTAAAA-----TCAA-GTCGC-A-TTTTCG-CG-AG----TGGAG-AAAATTCGCGGC-C-C-CG--G--ACTCCATTAAAA---T---ATAA---TCGGGATCGAAAG--T-T-------TGAATAA-ATATTT------T-AATCAAA-GATGGCGGAaaa
gi|5 : TGCTCCAAGT---TGTGA--GT--AA--CG---GTCG----CATATGCGACTAGAAAATT-TTATTT-------TG-CGACTAAAGATTAAAA-----TCAA-GTCGC-A-TTTTTG-CG-AG----TGAAG-AAAATTGG-GGC-C-T-TG--G--ACTCCATTAAAA---T---AAAATT-TTGGAATTGAAAG--T-T-------TGAATAC-ATATTT------TAAATCAAA-GATGGCGGAcc
gi|6 : AGTGCTCCAAGT---TGTGA--AT--AAAATG---GTCG----CATTTGAGACCAGAAAATT-T-ATTT-------TG-CAACTGAAGATTATAA-----TCAA-GCTGC-A-TTTTTG-GA-AT----TGGGGCAAAATTCG-GAC-------------CTCCATTAAAATTTT---ATAT---TTGGGATCGAAAG--A-T-------TGAATAA-ATATTT------T-AATC-AA-GATGGCAGacaa
gi|7 : ACAGCGTTCCAAGT---TGCGACTAT--AAATTG---GTCA----CCTTTGCGACTAGAAAATC-A-ATTT-------TG-CAAC------------------CAA-TTCGCTA-TTTT-G-TG-AG----TGGAG-AAAATTTG-GGCGC-C-TG--G---------TAAAATTTT---ATAA---TTGAGATCGAATG--T-T-------TA---AA-ACATTT------A-AAggaaacg
gi|8 : AGTGCTCCAAGT---TGCGA--GT--AAAACG---GTCG----CATATGCGACTAGAAAATT-G-ATTT-------TG-CGACTAGAGATTAAAA-----TCAA-GTCGC-A-TTATCG-CG-AG----TGGAG-AAAATCCG-GGC-C-T-TG--G--ACTCCATCAAAA---T---ATAA---TCGGAATCGAAAG--N-C-------Tggcaatcatgatccaacaaattagtg
gi|9 : GCGACTAGAAAATT-G-ATTT-------TG-CGACAAGAGATTAAAA-----TCAA-GTCGC-ATTTTTCG-CG-AG----TGGAG-AAAATCCG-GGC-CTT-TG--G--ACTCCATTAGAA---T---ATAA---TCAGAATCAAAAG--T-T-------TGAATAT-ATATTTTACTG-T-AATCAAA-GATGGCGGAcataatctaaaatgtcccaac
Alignments
lowQualScore : 1111111 111111
lowQualScore : 444 33 33 555 6666 2 2 2 7777777 4 0 66666 2 5 2 2 2 5555 2 0 2 333 22 33 777 3333333 888 33 2 8888888 3 999999 3 7 4
lowQualScore : ... .. .. ... .... . . . ....... . . ..... . . . . . .... . . . ... .. .. ... ....... ... .. . ....... . ...... . . .
lowQualScore : 777 77 77 000 1111 9 2 4 6666666 7 6 22222 5 0 5 4 4 0000 4 5 4 000 88 44 000 0000000 333 77 7 7777777 3 555555 6 2 0
consensus : ACAGTGCTCCAAGT---TGCGA--GT--AAAACG---GTCG----CATATGCGACTAGAAAATT-G-ATTT-------TG-CGACTAGAGATTAAAA-----TCAA-GTCGC-A-TTTTCG-CG-AG----TGGAG-AAAATCCG-GGC-C-T-CG--G--ACTCCATTAAAA---T---ATAA---TCGGGATCGAAAG--T-T-------TGAATAA-ATATTT------T-AATCAAA-GATGGCGGA
Reference ( family-923 ) : ACAGTGCTCCAAGT---TGCGA--GT--AAAACG---GTCG----CATATGCGACTAGAAAATT-G-ATTT-------TG-CGACTAGAGATTAAAA-----TCAA-GTCGC-A-TTTTCG-CG-AG----TGGAG-AAAATCCG-GGC-C-T-CG--G--ACTCCATTAAAA---T---ATAA---TCGGGATCGAAAG--T-T-------TGAATAA-ATATTT------T-AATCAAA-GATGGCGGA
gi|1 : CAGTGCTCCCAGT---TGCGA--GTTAAAAACACGCGTCG----CATATGCGACCTGAAAATT-G-ATTT-------TGCCGA-TATAGATTAAAA-----TCAACGTCGC-A-TTTTCGCCG-AG----TGGAG-AAAATCC--GGC-C-T-TG--G--ACTCCATTAAAA---T---ATAA---TC-GAATCGAAAGGTT-T-------TGAATAACATATTT------T-AATCAAAGGATGGCGG
gi|10 : TTTCG-CG-AG----TGGAG-AAAATCCG-GGC-C-T-TG--GTTAATCCATTAAAA---T---ATAgaacaacaa
gi|11 : tcGACTAGAAAATT-G-ATTTATCATTTTG-TGAATAGAGATTTTTA-----TGAA-GTTGC-A-TTTTCA-CA-AG----TTGAG-AAAATTCA-GGC-T-T-CT--A--A--CCATCTAAATTTT---ATGA---GCGGGATCGAAAG--TGTGTCACAGTGAATAA-ATATTT------T-AAT-GAA-GATGGCGGtattcgtgtaaaacagaaaatacttatcatatcgagcacaaaaaaattggaatataaactaagttttaagaaacagatggcgtgaaaaacaacaaatatttttaat
gi|12 : AGCGCTCCCAGT---TTCGA--CT--AAATTG---GTTG----CATTTGGGACTAGAAAATC-A-ATTT-------TG-CAAACAGAAATTGTAACCAGGCCAA-GTCGC-A-TTTTTG-TG-AGTGCATGGGG-AAAATCCG-GGA-C-T-Cgga
gi|13 : CAGTGCTCCAAGT---TGCGA--GT--AAAACG---GTCG----CATATGCGACTAGAAAATT-G-ATTT-------TG-CGACTAGAGATTAAAA-----TCAA-GTCGC-A-TTTTCG-CG-AG----TGGGG-AAAATTCG-GGC-C-C-CG--G--ACTCCATCAAAA---T---ATAA---TCGGGATCGAAAG--T-T-------TGAAtagtataatttccgtaaattatgcaatctaa
gi|14 : CTCCAAGT---TGCGA--GT--AAAACA---ATCA----CATTTGCAACCAGAAAATT-C-ATTT-------TG-TAACTAGAGATTATAA-----TCTA-GTTGC-A-TTTTT--CA-AG----TGAAG-AAAATTCG-AGC-------------CTTCAGTAAAA---TTTAGTAA---TCGAGATCAAAAG--T-T-------TGAATGA-AT
gi|15 : gcaACAGCACTGCAAGT---TGCAA--GT--AAAATG---GTCG----CAT----------------------T-------TG-CGATTAGAAATTATAA-----TCAA-TTCACAA-TTTTTG-TA-AA----TGGAG-AAAATTTG-GGT-C-TCCG--G---------TAAAA---T---TTTACTGTCAGGATTGACAG--T-T-------TG
gi|16 : ATAAGCAACCAAAAAAGT-G-ATTT-------TG-TGATAAGGGATTAAAA-----TCAA-GTCAC-A-TTTTCA-C--AG----TAGAG-AAAAT-CA-GGC-C-T-CGATG--ACTCCATT---A---T---ATAT---TTTATATTACAAG--T-T-------TGAATAA-ATGTTT------T-AATC-AA-GATGGCcctccaaaaacaaactttaat
gi|17 : TTTCG-CG-AG----TGGAG-AAAATCCG-GGC-C-T-TG--GTTAATCCATTAAAA---T---acggta
gi|18 : tagaaatattttaatttatatgacgacatacgaagagatgattaaaaaaacaaaggatcttcatggtcCCATTAAAA---TTCTATGA---TCGGGATCGAAAG--T-T-------TGAATAA-ATATTT------T-AATC-AT-CATGGCGG
gi|19 : cAGTGCTCCAAGC---TGGGA--GT--AAAACG---GTCG----CATTTGTGACCAGAAAATT-G-ATTT-------TA-CAACggcaa
gi|2 : CAGTGCTCCAAGT---TGCGA--GT--AAAACG---GTCG----CATATGCGACTAGACAATT-G-ATTT-------TA-CGACTAGAGATTAAAA-----TCAA-GTTGC-G-TTTTCG-TG-AG----TGGAG-AAAATCCG-GAC-C-T-CG--G--ACTCCATTAAAA---T---ATAA---TCGGGATCGAAAG--T-T-------TGAATAA-ATATTT------T-AATCAAA-GATGACGGA
gi|20 : agCAGTGCTCCAAGTAGTTGCGA--CT--AAAACG---GTCG----CATATGCGACTAGAAAATT-acaa
gi|21 : ACTAGAAAATT-G-ATTT-------TG-CGACTAGAGATTGAAA-----TCAA-GTCGC-A-TTT
gi|22 : CAGTGCTCCAAGT---TGCGA--GT--AAAAC
gi|3 : atgtttgctatgGTGCTC-AAGT---TGCGA--GT--AAAACG---GTCGATCGCATATGCGACTAGAAAATTGG-ATTT-------TGTCAACAAGAGAATTAAA-----TCAA-GTCGC-A-TTTCGG-CGAAG----TGGCG-AAAATCCG-GGC-A-T-TA--G--ACTC--TTA----------ATAA---TCAGAATCAAAGG--T-T-------TGAAT-A-ATATTTTACTCGT-AATCAAG-GATGGCGGA
gi|4 : ACAGTGCTCCAAGT---TGCGA--GT--AAAACG---GTCG----CATATGCGACTAGAAAATT-G-ATTT-------TG-CGACTAGAGATTAAAA-----TCAA-GTCGC-A-TTTTCG-CG-AG----TGGAG-AAAATTCGCGGC-C-C-CG--G--ACTCCATTAAAA---T---ATAA---TCGGGATCGAAAG--T-T-------TGAATAA-ATATTT------T-AATCAAA-GATGGCGGAaaa
gi|5 : TGCTCCAAGT---TGTGA--GT--AA--CG---GTCG----CATATGCGACTAGAAAATT-TTATTT-------TG-CGACTAAAGATTAAAA-----TCAA-GTCGC-A-TTTTTG-CG-AG----TGAAG-AAAATTGG-GGC-C-T-TG--G--ACTCCATTAAAA---T---AAAATT-TTGGAATTGAAAG--T-T-------TGAATAC-ATATTT------TAAATCAAA-GATGGCGGAcc
gi|6 : AGTGCTCCAAGT---TGTGA--AT--AAAATG---GTCG----CATTTGAGACCAGAAAATT-T-ATTT-------TG-CAACTGAAGATTATAA-----TCAA-GCTGC-A-TTTTTG-GA-AT----TGGGGCAAAATTCG-GAC-------------CTCCATTAAAATTTT---ATAT---TTGGGATCGAAAG--A-T-------TGAATAA-ATATTT------T-AATC-AA-GATGGCAGacaa
gi|7 : ACAGCGTTCCAAGT---TGCGACTAT--AAATTG---GTCA----CCTTTGCGACTAGAAAATC-A-ATTT-------TG-CAAC------------------CAA-TTCGCTA-TTTT-G-TG-AG----TGGAG-AAAATTTG-GGCGC-C-TG--G---------TAAAATTTT---ATAA---TTGAGATCGAATG--T-T-------TA---AA-ACATTT------A-AAggaaacg
gi|8 : AGTGCTCCAAGT---TGCGA--GT--AAAACG---GTCG----CATATGCGACTAGAAAATT-G-ATTT-------TG-CGACTAGAGATTAAAA-----TCAA-GTCGC-A-TTATCG-CG-AG----TGGAG-AAAATCCG-GGC-C-T-TG--G--ACTCCATCAAAA---T---ATAA---TCGGAATCGAAAG--N-C-------Tggcaatcatgatccaacaaattagtg
gi|9 : GCGACTAGAAAATT-G-ATTT-------TG-CGACAAGAGATTAAAA-----TCAA-GTCGC-ATTTTTCG-CG-AG----TGGAG-AAAATCCG-GGC-CTT-TG--G--ACTCCATTAGAA---T---ATAA---TCAGAATCAAAAG--T-T-------TGAATAT-ATATTTTACTG-T-AATCAAA-GATGGCGGAcataatctaaaatgtcccaac
blockSeqs : AGT CT . . ATCG T G T ATCATTT T CCAGG . A T . A TGCA C C GC CC AT TTA TTTT CTG . G GTCACAG . TACTCG A G .
blockSeqs : . . . . . A . . . . . . T . . . . . . CT T . TTA TTTA TT . . . . TACTG . A .
blockSeqs : . . . . . T . . . . . . . . . . . . . C C . A TTCT . . . . . . . A .
blockSeqs : . . . . . A . . . . . . . . . . . . . T C . A TTTT . . . . . . . A .
blockSeqs : . . . . . T . . . . . . . . . . . . . C C . A TTTT . . . . . . . A .
blockSeqs : . . . . . A . . . . . . . . . . . . . C C . A T . . . . . . . A .
blockSeqs : . . . . . A . . . . . . . . . . . . . C T . A T . . . . . . . . .
blockSeqs : . . . . . A . . . . . . . . . . . . . C C . A T . . . . . . . . .
blockSeqs : . . . . . A . . . . . . . . . . . . . C T . A T . . . . . . . . .
blockSeqs : . . . . . A . . . . . . . . . . . . . C C . A T . . . . . . .
blockSeqs : . . . . . T . . . . . . . . . . . . . A T . A T . . . . .
blockSeqs : . . . . . T . . . . . . . . . . . . . C T . . T . . . .
blockSeqs : . . . . . A . . . . . . . . . . . . . C T . . T . . . .
blockSeqs : . . . . . . . . . . . . . . . . . C T . . T . . . .
blockSeqs : . . . . . . . . . . . . . . . . . T
blockSeqs : . . . . . . . . . . . .
blockSeqs : .
blockSeqCons : ** *** **
originalCons : ACAGTGCTCCAAGT---TGCGA--GT--AAAACG---GTCG----CATATGCGACTAGAAAATT-G-ATTT-------TG-CGACTAGAGATTAAAA-----TCAA-GTCGC-A-TTTTCG-CG-AG----TGGAG-AAAATCCG-GGC-C-T-CG--G--ACTCCATTAAAA---T---ATAA---TCGGGATCGAAAG--T-T-------TGAATAA-ATATTT------T-AATCAAA-GATGGCGGA
finalCons : ACAGTGCTCCAAGT---TGCGA--GT--AAAACG---GTCG----CATATGCGACTAGAAAATT-G-ATTT-------TG-CGACTAGAGATTAAAA-----TCAA-GTCGC-A-TTTTCG-CG-AG----TGGAG-AAAATCCG-GGC-C-T-CG--G--ACTCCATTAAAA---T---ATAA---TCGGGATCGAAAG--T-T-------TGAATAA-ATATTT------T-AATCAAA-GATGGCGGA
Alignments
lowQualScore : 1111111 111111
lowQualScore : 444 33 33 555 6666 2 2 2 7777777 4 0 66666 2 5 2 2 2 5555 2 0 2 333 22 33 777 3333333 888 33 2 8888888 3 999999 3 7 4
lowQualScore : ... .. .. ... .... . . . ....... . . ..... . . . . . .... . . . ... .. .. ... ....... ... .. . ....... . ...... . . .
lowQualScore : 777 77 77 000 1111 9 2 4 6666666 7 6 22222 5 0 5 4 4 0000 4 5 4 000 88 44 000 0000000 333 77 7 7777777 3 555555 6 2 0
consensus : ACAGTGCTCCAAGT---TGCGA--GT--AAAACG---GTCG----CATATGCGACTAGAAAATT-G-ATTT-------TG-CGACTAGAGATTAAAA-----TCAA-GTCGC-A-TTTTCG-CG-AG----TGGAG-AAAATCCG-GGC-C-T-CG--G--ACTCCATTAAAA---T---ATAA---TCGGGATCGAAAG--T-T-------TGAATAA-ATATTT------T-AATCAAA-GATGGCGGA
Reference ( family-923 ) : ACAGTGCTCCAAGT---TGCGA--GT--AAAACG---GTCG----CATATGCGACTAGAAAATT-G-ATTT-------TG-CGACTAGAGATTAAAA-----TCAA-GTCGC-A-TTTTCG-CG-AG----TGGAG-AAAATCCG-GGC-C-T-CG--G--ACTCCATTAAAA---T---ATAA---TCGGGATCGAAAG--T-T-------TGAATAA-ATATTT------T-AATCAAA-GATGGCGGA
gi|1 : CAGTGCTCCCAGT---TGCGA--GTTAAAAACACGCGTCG----CATATGCGACCTGAAAATT-G-ATTT-------TGCCGA-TATAGATTAAAA-----TCAACGTCGC-A-TTTTCGCCG-AG----TGGAG-AAAATCC--GGC-C-T-TG--G--ACTCCATTAAAA---T---ATAA---TC-GAATCGAAAGGTT-T-------TGAATAACATATTT------T-AATCAAAGGATGGCGG
gi|10 : TTTCG-CG-AG----TGGAG-AAAATCCG-GGC-C-T-TG--GTTAATCCATTAAAA---T---ATAgaacaacaa
gi|11 : tcGACTAGAAAATT-G-ATTTATCATTTTG-TGAATAGAGATTTTTA-----TGAA-GTTGC-A-TTTTCA-CA-AG----TTGAG-AAAATTCA-GGC-T-T-CT--A--A--CCATCTAAATTTT---ATGA---GCGGGATCGAAAG--TGTGTCACAGTGAATAA-ATATTT------T-AAT-GAA-GATGGCGGtattcgtgtaaaacagaaaatacttatcatatcgagcacaaaaaaattggaatataaactaagttttaagaaacagatggcgtgaaaaacaacaaatatttttaat
gi|12 : AGCGCTCCCAGT---TTCGA--CT--AAATTG---GTTG----CATTTGGGACTAGAAAATC-A-ATTT-------TG-CAAACAGAAATTGTAACCAGGCCAA-GTCGC-A-TTTTTG-TG-AGTGCATGGGG-AAAATCCG-GGA-C-T-Cgga
gi|13 : CAGTGCTCCAAGT---TGCGA--GT--AAAACG---GTCG----CATATGCGACTAGAAAATT-G-ATTT-------TG-CGACTAGAGATTAAAA-----TCAA-GTCGC-A-TTTTCG-CG-AG----TGGGG-AAAATTCG-GGC-C-C-CG--G--ACTCCATCAAAA---T---ATAA---TCGGGATCGAAAG--T-T-------TGAAtagtataatttccgtaaattatgcaatctaa
gi|14 : CTCCAAGT---TGCGA--GT--AAAACA---ATCA----CATTTGCAACCAGAAAATT-C-ATTT-------TG-TAACTAGAGATTATAA-----TCTA-GTTGC-A-TTTTT--CA-AG----TGAAG-AAAATTCG-AGC-------------CTTCAGTAAAA---TTTAGTAA---TCGAGATCAAAAG--T-T-------TGAATGA-AT
gi|15 : gcaACAGCACTGCAAGT---TGCAA--GT--AAAATG---GTCG----CAT----------------------T-------TG-CGATTAGAAATTATAA-----TCAA-TTCACAA-TTTTTG-TA-AA----TGGAG-AAAATTTG-GGT-C-TCCG--G---------TAAAA---T---TTTACTGTCAGGATTGACAG--T-T-------TG
gi|16 : ATAAGCAACCAAAAAAGT-G-ATTT-------TG-TGATAAGGGATTAAAA-----TCAA-GTCAC-A-TTTTCA-C--AG----TAGAG-AAAAT-CA-GGC-C-T-CGATG--ACTCCATT---A---T---ATAT---TTTATATTACAAG--T-T-------TGAATAA-ATGTTT------T-AATC-AA-GATGGCcctccaaaaacaaactttaat
gi|17 : TTTCG-CG-AG----TGGAG-AAAATCCG-GGC-C-T-TG--GTTAATCCATTAAAA---T---acggta
gi|18 : tagaaatattttaatttatatgacgacatacgaagagatgattaaaaaaacaaaggatcttcatggtcCCATTAAAA---TTCTATGA---TCGGGATCGAAAG--T-T-------TGAATAA-ATATTT------T-AATC-AT-CATGGCGG
gi|19 : cAGTGCTCCAAGC---TGGGA--GT--AAAACG---GTCG----CATTTGTGACCAGAAAATT-G-ATTT-------TA-CAACggcaa
gi|2 : CAGTGCTCCAAGT---TGCGA--GT--AAAACG---GTCG----CATATGCGACTAGACAATT-G-ATTT-------TA-CGACTAGAGATTAAAA-----TCAA-GTTGC-G-TTTTCG-TG-AG----TGGAG-AAAATCCG-GAC-C-T-CG--G--ACTCCATTAAAA---T---ATAA---TCGGGATCGAAAG--T-T-------TGAATAA-ATATTT------T-AATCAAA-GATGACGGA
gi|20 : agCAGTGCTCCAAGTAGTTGCGA--CT--AAAACG---GTCG----CATATGCGACTAGAAAATT-acaa
gi|21 : ACTAGAAAATT-G-ATTT-------TG-CGACTAGAGATTGAAA-----TCAA-GTCGC-A-TTT
gi|22 : CAGTGCTCCAAGT---TGCGA--GT--AAAAC
gi|3 : atgtttgctatgGTGCTC-AAGT---TGCGA--GT--AAAACG---GTCGATCGCATATGCGACTAGAAAATTGG-ATTT-------TGTCAACAAGAGAATTAAA-----TCAA-GTCGC-A-TTTCGG-CGAAG----TGGCG-AAAATCCG-GGC-A-T-TA--G--ACTC--TTA----------ATAA---TCAGAATCAAAGG--T-T-------TGAAT-A-ATATTTTACTCGT-AATCAAG-GATGGCGGA
gi|4 : ACAGTGCTCCAAGT---TGCGA--GT--AAAACG---GTCG----CATATGCGACTAGAAAATT-G-ATTT-------TG-CGACTAGAGATTAAAA-----TCAA-GTCGC-A-TTTTCG-CG-AG----TGGAG-AAAATTCGCGGC-C-C-CG--G--ACTCCATTAAAA---T---ATAA---TCGGGATCGAAAG--T-T-------TGAATAA-ATATTT------T-AATCAAA-GATGGCGGAaaa
gi|5 : TGCTCCAAGT---TGTGA--GT--AA--CG---GTCG----CATATGCGACTAGAAAATT-TTATTT-------TG-CGACTAAAGATTAAAA-----TCAA-GTCGC-A-TTTTTG-CG-AG----TGAAG-AAAATTGG-GGC-C-T-TG--G--ACTCCATTAAAA---T---AAAATT-TTGGAATTGAAAG--T-T-------TGAATAC-ATATTT------TAAATCAAA-GATGGCGGAcc
gi|6 : AGTGCTCCAAGT---TGTGA--AT--AAAATG---GTCG----CATTTGAGACCAGAAAATT-T-ATTT-------TG-CAACTGAAGATTATAA-----TCAA-GCTGC-A-TTTTTG-GA-AT----TGGGGCAAAATTCG-GAC-------------CTCCATTAAAATTTT---ATAT---TTGGGATCGAAAG--A-T-------TGAATAA-ATATTT------T-AATC-AA-GATGGCAGacaa
gi|7 : ACAGCGTTCCAAGT---TGCGACTAT--AAATTG---GTCA----CCTTTGCGACTAGAAAATC-A-ATTT-------TG-CAAC------------------CAA-TTCGCTA-TTTT-G-TG-AG----TGGAG-AAAATTTG-GGCGC-C-TG--G---------TAAAATTTT---ATAA---TTGAGATCGAATG--T-T-------TA---AA-ACATTT------A-AAggaaacg
gi|8 : AGTGCTCCAAGT---TGCGA--GT--AAAACG---GTCG----CATATGCGACTAGAAAATT-G-ATTT-------TG-CGACTAGAGATTAAAA-----TCAA-GTCGC-A-TTATCG-CG-AG----TGGAG-AAAATCCG-GGC-C-T-TG--G--ACTCCATCAAAA---T---ATAA---TCGGAATCGAAAG--N-C-------Tggcaatcatgatccaacaaattagtg
gi|9 : GCGACTAGAAAATT-G-ATTT-------TG-CGACAAGAGATTAAAA-----TCAA-GTCGC-ATTTTTCG-CG-AG----TGGAG-AAAATCCG-GGC-CTT-TG--G--ACTCCATTAGAA---T---ATAA---TCAGAATCAAAAG--T-T-------TGAATAT-ATATTTTACTG-T-AATCAAA-GATGGCGGAcataatctaaaatgtcccaac