lowQualScore : 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 1 2222222222 1111 666666666666666666666666666666666666666666666666 3333333333333333 1111 333333333333333333 11 555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 222222222222222222222222 1111 1 444 11 222 22222 1 11 1 333333333333 1 11 1 33333333333 1 11 1
lowQualScore : 4 5 4 7 2 4 0 88 888 8 4 2222222222 5555 4 4 44 4 4 8 8 5 5 4 77 5 8888 222222222222222222222222222222222222222222222222 5 6666 5 0 0 1111111111111111 77 7 2222 5 222222222222222222 1 6 22 6 888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 9 1 8 999999999999999999999999 6 44 9999 5 777 11 66 6 11 888 4 22222 0 33 3 3 5 3 444444444444 2 33 0 7 9 00 0 0 3 11 77777777777 0 8 0 8 5 5 1 1 8 666 99 8 5 333 2 2 7 6 5 7
lowQualScore : . . . . . . . .. ... . . .......... .... . . .. . . . . . . . .. . .... ................................................ . .... . . . ................ .. . .... . .................. . . .. . ................................................................................................ . . . ........................ . .. .... . ... .. .. . .. ... . ..... . .. . . . . ............ . .. . . . .. . . . .. ........... . . . . . . . . . ... .. . . ... . . . . . .
lowQualScore : 1 4 4 4 0 2 7 33 444 1 0 6666666666 9999 6 0 55 0 0 0 3 0 0 5 66 7 4444 666666666666666666666666666666666666666666666666 0 9999 0 7 4 0000000000000000 99 6 1111 7 555555555555555555 0 7 88 7 666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 6 4 0 222222222222222222222222 0 00 5555 0 000 66 88 7 00 000 0 00000 0 88 5 2 5 2 000000000000 5 55 0 0 2 00 2 0 5 55 88888888888 0 0 8 0 0 6 8 4 0 888 00 0 6 555 5 5 3 7 3 3
consensus : GTTGTTTTTGA-TNTATGTNAATGACGTNNCTGAAAA--TATGTT-AT--C-N-TT-NTGT--A-GATTATNTGCAGATGAC-AA-TTC-AT-TACA-ATA-TNCA-T-CA--NATAA---TA---TAGC--AAACATT------GAANA---------------CAT-T-TTAAA-TCACGA-TTTA-AGT-ATA---TT--AGATAGA----TGG-T--CATCC--A----A-A-TGGCTAC-TGNAATTTAA-TCC-CNC-TAA-A-C-T-AA---GC-----A----T-ATTTTTT-C-ACA-C-TAAA---NT----CAAATTATGT-----TCTAT-C----GCTT-AATTTCAACAATG-TCCATTA-GAATTCGT-GACAC-N-TCACAAACATTTAGG-A-TTANTTTCT--TTCATGATCTTAGTTGGT-CCG--AATACATNAACA--GA-ACAA-CA--AGNAAGGCTTATCAAAG--ANTAGG----TCTTCTGA-AAAAATTAAAATACATCA-TTNGTAGAAAAA---CT----CTA-TCA-AAAATGTA-TACGACATTTGTAAGACC-ATTGCTT--GAA-TACGCTTCAGTTGTTTGGGATGGGTGTCCAATACAATATATCGT-AATCAACTAA
Reference ( gi|3 ) : GTTATTTTTGA-TCTATGTGAACGACGTAGCTGAAAA--TATGAT-AT--C-A-TT-ATGT--A-GATTGTTTGCAGATGAC-AA-TTC-AT-TACA-ATG-TACA-T-CA--TATAA---TA---TAGC--AAATATT------GAATA---------------CAT-T-TTGAA-TCACGA-TTTA-AGT-ATA---TT--AGACAGA----TGG-T--CATCC--A----A-A-TGGCTAC-TTAAATTTAA-TCC-CTC-TAA-A-C-T-AA---GC-----A----T-ATTTTTT-C-ACA-C-TAAG---GT----CAAATTATGT-----TCTAC-C----ACTTCAATTTCAGCAATG-TCCATTA-GAATTCTT-GACAT-C-TCACAAGCATTTAGG-A-TTAGTTTTTA-GTCATGATCTTAGTTGGT-CTG--AA---ATTAACA--GG-ACAA-CA--AAAAAGGCTTATCAAAG--ATTAGG----TCTTCTGA-AAAAATTAAAATACATCA-TTTGTAGAAATA---CT----CTA-TCA-AAAATGTA-TACGACATTTATAAGACC-ATTGCTT--GAA-TACGCTTCAGTTGTTTGGGATGGGTGTCCAATACAATATATGGTAAATCAACTAA
gi|2 : GTTCTTTTGAA-TCTATGGAAACGACGTAGCTGAAAAATTATGATCAT--C-A-TT-ATGT--A--ATTGTTTGCAGATGACCAA-TTC-AT-TACACATGCTACA-T-CA--TATAA---TA---TAGCC-AAATATT------GAATAACATTAAATCAAAATCAT-T-TTAAAATCACGAATTTA-AGTCATA---TTCAAGACAGA----TGG-T--CATCC--A----A---TG-CTACCTTAAATTTAACTCT-CTC-TAA-AAC-T-AACACGC-----A----TTATTTTTT-C-ACAAC-TAAG---GT----CAAATTAT-T-----TC-AC-CAA--ACTTCAATTTCA-CAATG-TATATTACTAATTCCTAGACATAC-TAACAAACATT--AG-A-TTA-TTTTTACTTCAT-ATC-TAGTT-GT-CTG--AATACATTAACA--GT-ATAA-CA--AAAAAGGCTTATC-AAG--ATTA-T----TCTTC-GACAAAAATT-AAATACATCA-TTGGTAGAAAAA---TTCATCCTATTCACAAAATGTATTACGACA-TTATTAGA-C-ATTGCTT--GAATTACGCTTCAGTTGTT--GGAT-GGTGTCCAATACAATATATTGGAAA--AACTA
gi|1 : GCTATTTTTAA-TATATGTCAATGATATTGCAGAAAA--AATGTT-AT--C-T-TT-CTGC--AAGATTATTTGCAGATGAC-AA-TTC-TT-TACA---G-CACA-C-C---TGTAA---TAATTTA-C--AAGCGCTA-----GAAAA---------------CAA-T-TTAAA-TCATGA-TTTACAAC-A-G---TT--AGA-AAT----TTG-T--C--CCAAA----A-A-TGGTTAC-TGCAATTTAA-TCCACAA-AAA-A-CAA-AA---GCA----A----T-ATCTTTTACAACA-C--AAA---ATAATACAAA-CA-GTCCGAATCTAT-C----------ATTTCAACAAAGTTCCA-TA-GAATTCGT-TACGC-A-TCATAAACACTTAGG-AGTTACTTTCT--CTCAAGATCTAAGTTGGT-CCT--AT---ATATATA--GATACAA-TACTAGCAAAGC-TA--AAAGAAAATGGG----T-TAATGA-AAAAGTTAAAGTTTAAAA-TTAGCCGAAAAT---CG----TTA-TCA-TTAATGTA-TACTACATCTGTTAGACCTATT--TTA-GAA-TATGCATCAG
gi|8 : ggttaaagttaccttgaagacagaacacaaaaagtattatacagagaagctctttcaagcacaaaaccactatttgctggtgtccctcaagggtctgtactaggacctttGTT-TTTTTTC-TATATGTAAATGATGTTTCGGACAA--AATGTT-GT--C----T-ATGTGCA-GGCTTTTTGTGGATGAT-AA-TTCTAT-T-CA-ATA-TTTT-T-CA--AATAA---TA---TTGCTTAGATA--------GAAAA---------------TAT-TGTTAAA-T-ACGATTTTT-TTT-ATT---TT--AGAAAGA----TGG-T--TGCTT--AAAACA-A-TGGCTAC-TTCATTTTAA-CCC-CAG-CAA-T-T-T-AA---GC-----AAAGTT-GCTTTTT-T-A
gi|5 : atgtatctagatgaaggaaaatcacgttgtattttccaaggcctctgtacttgggcctttacGTTGTTTTTGA-TATATGTCAATGTTGTTGCTCATAA--TATGTT-AT--C-T-TT-CTGT--C-GGCTATATGCTGATGAC-AA-CTC-AT-T-CA-ACA-TGC
gi|13 : atactattttaatacttgccggccttctgccaggtccctacagtctaccaacttgattgaaactgatatcaatagccattgataaaatgatgatgaaatgtatgtgttatggttttaatgcgtctgtcaaaggcatttgacaaatcctggaagagtgcgtctttattacaacgtaatggaattggtggaattcttttccaatggtttaaaagctacttgtataatagaacaattaggttatggtatataatttttgcatagtaaacggtttgaaatgaatgctggagtgccacaaggttccgtccttggttcattTTGTTTTTGA-TATACGTTAATGACATACATGAAAA--TATGTT-AT--CTG-TT--TGT--G-AACTATATGCAGATGAT-AA-TAC-ATGTACggataagaatttgaacaacatagaatg
gi|12 : gaaaatcttttagaatggtttaaaagctattcaagtaacagatcacagaaagtaatgtacagcaactaattttcttctataaaacacacttatgcaggtgtaccccaccccaaggctctgtacatggtccaactTTGTTTTTGA-TATACGTTAATGACATACATGAAAA--TTTGTT-AT--CTG-TT-TTGT--G-AACTATATGCAGATGAT-AA-TAC-ATGTACc
gi|9 : gaaaatcttttagaatggtttaaaagctattcaagtaacagatcacagaaagtaatgtacagcaactaatttcttctataaaacacacttatgcaggtgtaccccaccccaaggctctgtacatggtccaactTTATTTAT-A-TTTATG---ATGTTGCAAATGAAA-----TGGT-CA--C-T-TT-TTGC--A-GATTGTATGCAAATGAT-AA-CTC-AT-TACA-ATA-TTCC-T-CT--AATAA---TT---TAAA--AAGCATT------GAA-A---------------CATGT-TTAAA-ctacaacaaagttcaca
gi|4 : tcTATTATTAA-TCTATGTCAATGATGTTGCTGAAAA--TATCAC-GT----A-TTCCTGT--A-GATTATATGCTGGTGAT-AA-CTC-AA-TTCA-ATG-TGCACT-TAGCTAAAACTTTA----AAC--GAA-ATT------GAAT------------------T-T-----A-TCATGA-CCTC-AGC-GTC---CT--AGATGAA----TGG-T--CA--A--A----A-A-TAGTTGT-TAAAGTTTAA-TCC-CTCTTAA-A-C-TAAA---GCTGTAAG----T-AGTTTT-----CA-T-TGAACCTCT----CAAGTTATTT-----T-----------------TTTGAACATTG-TC----G-GAGTATGT-GACAG-T-GCTCAGACACCTAG------AGGCTTT------TG-----AGCTGGTCCCGGCAA---ATAAATA--AA-TTGA-CA--AGTACAGCTTA-CAAAA--AGCAAGAATTTCTTTTTA-AAAA--TCAAAT---TTACTTTAGGGAAAAAAACCT----CTT-TTT-AAAATG--------------TAAGTCC-A--GCTTTAGAA-TATACCTCCGTTGTTTGAGATGGATGTaaaaacactccaaatgctcaattttttacaaaaaataaaaatatagtttatcttaggcttaactttcaacaatgtcaattacaattcgtagatcaacacaaaaatgtaggcattattttcttttccggatctaagctggtcgcattatacaaat
gi|14 : TATTTTTAAATTTATTTAAATGATGTTTCGGACAA--AATGTT-GT--C-A-AT-GTGC--A-GATTTTTAGCAGATGAA-AATTTT-AT-T-CA-ATA-TTTA-T-CA--GATAG---TG---GTGC--TGAAATT------GACCG---------------TAT-T-ATCAA-TCAAGA-TT----GT-CTATTTTT--AGATAGC----TGG-T--CAac
gi|6 : ctgttaatgctggtgcttcccagagttctgtacatgTGAT-ATTGC-AGTT-TTGT--A-GATTATTTTCAGATGAC-CA-TTC-TT-TACA-ACA-CACT-TGCA---ATAA---T----TCAC--AAA-ATCAAGAAAAAATA----------------AT-T-TAGAT-TAATGA-C-----GT-ACA---TC--AGTTAGAAATTTGGTT--CA--C--A----A-ACTGGATAC-TGCAACCTGA-TCC---------A-C---AA-----------------ATTTTTTAC-ACA-CATCAA---TA----CAAA-CACGC-----TGAATGT----ATT---ATTTCAGCAAAG-TTCCCTA-GAA-------ACAC-A-TCGTAAACATaaaca
gi|17 : caaaattacaacgcaagtagaacattctaaaaaacaagtacgttatatgaagattgctctttcaaacattaaaccatatatgctggtgtccgtcttaggccattgttattgtcttaatacgtgtacgatgccagA---------------TAT-T-TTGAT-CCACAA-TTTA-GAT-GTA---TT--AGACAGA----TTG-TCACATTC--A----AGA-TTACTGC-TGGAATACAA-CCT-TCC-TAAGA-C-TAAA---GC-----A----atttctctcaag
gi|9 : TTTTT-T-ACA-A--AAA---AT----AAAAATATAG-----TTTAT-CTTAGGCTTAACTTTCAACAATG-TCAATTA-CAATTCGT--AGAT-CAACACAAAAATGTAGGCA-TTATTTTCTT-TTCCGGATCTAAGCTGGT-C
gi|22 : tcttatttatatttatgatgttgcaaatgaaatggtcactttttgcagattgtatgcaaatgataactcattacaatattcctctaataatttaaaaagcattgaaacatgtttaaaaaaaacactccaaatgctcaaATGATCTTAGTTGGT-CTG--AA---gcattatacaaat
gi|7 : atgtaATCTTAGTTGGT-CTG--AATACATTAACGACGG-ACAAACA--AAAAAGGCTTATCAAAG--ATT-GG----TCTTCTGA-AAAAATTAAAATACATCA-TTTGTAGAAATA---CT----CTA-TCA-AAAATGTA-TACGACATTTATAAGACC-ATTGCTT--GAA-TACGCTTCAGTTGTTTGGGATGGGTGTCCAATACAATATATGGT-AATCAACTAAnnnnnnnnnnnnnnnnnnnnnnnnnat
gi|18 : A-AAAATGTA-TATTACGTTTGTAAGACC-AATTTTA--GAA-TATGCTTC---TG--TGGTATGGGT----AACAAAAT-TTTCGTCAATCAttttcctctgtttcaaagttatatcggagattctgtgtagatttactgtatgactacctcacaccatattatataatcaaattaccatcacatgtgtatttacttcttttttcttctaatgtaactacaaattatcatgtctacttattgtaattagtatatattgacagttgt
8 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|10 ): TTACTCAGATACCTATATCGATTGTCATTTTGTTATGGGGAGATGAACAAACATGACATGTAAATCAACTAATTTTCCTTGTTCAAAAGTATATCAGAGATTCTGGTAGATTTACTGTATGACTACCCTCACATCATATTATATTAATCAAATACCATCACATGTGTATTACTTATTTTCTTTCTAATGTAACTACAAATTATCATGTCTTACTTATTGTAATTAGTATATATTGACAGTTG
Unaligned ( gi|11 ): TTTCAAACATAAGACCTTTCTAAGCTGGTGTCCCTCTATGGTTGGTAATAGGACCATTGTTATTTTGATATATGTCAATAATGTTGCAGGTAAGATGTTATTTTTACATCACACTAAGTCTTACAATAAATTACAACCACAGAGAGCAAATTTCAGTTGGAACATACAATAATGAAATATATGGTCCCAATAATCATCACTGCAATTGAAGCCCCAAAAGGCCGAAAATCCATATTTTT
Unaligned ( gi|15 ): AGGATATCTATTGGAGTGGTTTAAAAGCTATTCAAGTAACAGATCACAGAAAGTAATGTACAGAAACTTATTTTCTTCTATAAAACATACTAATGCAGGCCATGTACTTCGTCCACTTTTATTTTTGAT
Unaligned ( gi|16 ): TTTTTATATATGTCAATGATGTTGCTCATAATACGTTATCTTTTTGTCGGTTATATGTTGATTTCAATTCAATATGCGGATAAGAATTTAAACAACATAGAATGTGTACTTAATCATGATCTTAG
Unaligned ( gi|19 ): TAACAGATCACAAAATGCAATGCACAGAAACTTGGTTTTTTTTTTCTGTAAAGCACAGGCAATGTAAATGTACCCAAAGGTTCT
Unaligned ( gi|20 ): GTATGCCTCAAGGGTCTGTACCAAGACCTTTCTTATTTTTGTTATACACGTACATAAATGATGAT
Unaligned ( gi|21 ): CTGATTTATAAATGATTTTGCAGATGAAATGGTCAGTTTTTGCAGATTGTACGCAGATGATA
Unaligned ( gi|23 ): ATCATTGTAGTAACATTTATTAAGAAATCTTTAC
Alignments
lowQualScore : 11111 1111 1111111 222222222222222222 1111 2222222222222222 222222222222222 444444444444444444444444444444444444444 111 2222222222222222 1 7777777777777777777777777777 1 2222222222222 111 11111 11 1 11 1111111 11 1111 11 2
lowQualScore : 1 55 0 3 1 1 0 22 555 1 44 3 44 1 333 1 1 3 3 3 00000 6 3 0 3 1 0000 333 666666 7777777 4 99 999999999999999999 0000 2 3 2 0000000000000000 66 4 9999 777777777777777 777 0 5 22 5 444444444444444444444444444444444444444 555 4444444444444444 1 5555555555555555555555555555 4 6 999 6 2 3 8888 0000000000000 333 8 33 1 1 1 44444 8 11 1 0 0 0 11 1 9999999 0 88 77 0 1 1 8 7777 8 6 6 2 6 3 2 55 6 3 0 0 3 3 6 0 3
lowQualScore : . .. . . . . . .. ... . .. . .. . ... . . . . . ..... . . . . . .... ... ...... ....... . .. .................. .... . . . ................ .. . .... ............... ... . . .. . ....................................... ... ................ . ............................ . . ... . . . .... ............. ... . .. . . . ..... . .. . . . . .. . ....... . .. .. . . . . .... . . . . . . . .. . . . . . . . . .
lowQualScore : 4 00 4 3 0 0 7 00 888 5 66 1 11 0 222 0 9 1 1 1 88888 2 3 1 3 0 0000 666 666666 2222222 0 55 222222222222222222 1111 6 6 3 9999999999999999 11 3 4444 333333333333333 111 2 0 44 0 000000000000000000000000000000000000000 333 2222222222222222 7 0000000000000000000000000000 2 7 888 7 5 3 8888 8888888888888 555 9 22 7 0 0 44444 0 00 0 8 6 8 00 0 0000000 8 88 00 8 0 4 0 0000 0 7 7 5 7 5 5 88 7 2 8 8 2 2 5 0 2
consensus : GTTGTT--TTTGA-TATATGTCAATGACGTTGC---TGAAAA--TATG-TTATC-TTTNTGT-A-GATTATNTGCAGATGAC-AA-TTC-AT-----TACA-ATA-TNC--A-TCAAATAATATAGC-AAA---C---A-TT--GAANA---------------CAT--T-TTAAA-TCACGA-TTTA-AGT-ATA---TT--AGACAGA----TGGT--CATC-C--A----A-A-TGGCTAC-TGNAATTTAA-TCC-CNC-TAA-A---C-T-AA---G---C-----A----T-ATTTTTT-C-ACA-C-TAAA---NT----CAAATTATGT-----TCTATC----G--CTT-AA-TTTCAACAATG-TCCATTAG-AATTCGT-GACACA-TCACAAACATTTAG-G-A-TTANTTTC-T-TTCATGATCTTAGTTGGTCCGAATACATTAACA--GG-ACAA-CA--AAAAAGGCTTATCAAAG--ATTAGG----TCTTCTGA-AAAAATTAAA-ATACATCATTNGTAGAAAAA-CTC----TAT-CA-AAAATGTAT-ACGACATTTGTAAGACC-ATTGCTT--GAAT-ACGCTTCAGTTGTTTGGGATGGGTGTCCAATACAATATATNGT-AATCAACTAA
Reference ( family-92 ) : GTTGTT--TTTGA-TNTATGTNAATGACGTNNC---TGAAAA--TATG-TTATC-NTTNTGT-A-GATTATNTGCAGATGAC-AA-TTC-AT-----TACA-ATA-TNC--A-TCANATAATATAGC-AAA---C---A-TT--GAANA---------------CAT--T-TTAAA-TCACGA-TTTA-AGT-ATA---TT--AGATAGA----TGGT--CATC-C--A----A-A-TGGCTAC-TGNAATTTAA-TCC-CNC-TAA-A---C-T-AA---G---C-----A----T-ATTTTTT-C-ACA-C-TAAA---NT----CAAATTATGT-----TCTATC----G--CTT-AA-TTTCAACAATG-TCCATTAG-AATTCGT-GACACN-TCACAAACATTTAG-G-A-TTANTTTC-T-TTCATGATCTTAGTTGGTCCGAATACATNAACA--GA-ACAA-CA--AGNAAGGCTTATCAAAG--ANTAGG----TCTTCTGA-AAAAATTAAA-ATACATCATTNGTAGAAAAA-CTC----TAT-CA-AAAATGTAT-ACGACATTTGTAAGACC-ATTGCTT--GAAT-ACGCTTCAGTTGTTTGGGATGGGTGTCCAATACAATATATCGT-AATCAACTAA
gi|1 : GCTATT--TTTAA-TATATGTCAATGATATTGC---AGAAAA--AATG-TTATC-TTTCTGC-AAGATTATTTGCAGATGAC-AA-TTC-TT-----TACA-GCA-CAC--C-TGTAATAATTTA-C-AAG---C---G-CTA-GAAAA---------------CAA--T-TTAAA-TCATGA-TTTACAAC-A-G---TT--AGA-AAT----TTGT--C--C-CAAA----A-A-TGGTTAC-TGCAATTTAA-TCCACAA-AAA-A---CAA-AA---G---CA----A----T-ATCTTTTACAACA-C--AAA---ATAATACAAA-CA-GTCCGAATCTATC------------A-TTTCAACAAAGTTCCA-TAG-AATTCGT-TACGCA-TCATAAACACTTAG-G-AGTTACTTTC-T-CTCAAGATCTAAGTTGGTCC---TATATATATA--GATACAA-TACTAGCAAAGC-TA--AAAGAAAATGGG----T-TAATGA-AAAAGTTAAA-GTTTAAAATTAGCCGAAAAT-CGT----TAT-CA-TTAATGTAT-ACTACATCTGTTAGACCTATT--TTA-GAAT-ATGCATCAG
gi|11 : ggttaaagttaccttgaagacagaacacaaaaagtattatacagagaagctctttcaagcacaaaaccactatttgctggtgtccctcaagggtctgtactaggacctttTTGTTATTTTGA-TATATGTCAATAATGTTGC---AGGTAA--GATG-TTATT-TTTACATCA-CACTAAGT-C---TTAC-AA-TAA-AT-----TACA-A----CC--A--CAG-----AGAGC-AAATTTC---AGTT--GGA-A---------------CAT------------ACAA---TA-------A---TG--AAATATA----TGGT--C--C-C--AAT--A-A-TCATCAC-TGCAATTGAA-GCC-C-C-AAA-AGGCC-G-AA---AATCC-----A----T-ATTTTT
gi|12 : tttcaaacataagacctttctaagctggtgtccctctatggttggtaataggaccaTTGTT--TTTGA-TATACGTTAATGACATACA---TGAAAA--TTTG-TTATCTGTTTTGT-G-AACTATATGCAGATGAT-AA-TAC-ATGTACCTACA-ACA-
gi|13 : gaaaatcttttagaatggtttaaaagctattcaagtaacagatcacagaaagtaatgtacagcaactaatttcttctataaaacacacttatgcaggtgtaccccaccccaaggctctgtacatggtccaactTTGTT--TTTGA-TATACGTTAATGACATACA---TGAAAA--TATG-TTATC-TGTTTGT-G-AACTATATGCAGATGAT-AA-TAC-ATG----TACaagttcaca
gi|14 : gaaaatcttttagaatggtttaaaagctattcaagtaacagatcacagaaagtaatgtacagcaactaattttcttctataaaacacacttatgcaggtgtaccccaccccaaggctctgtacatggtccaactTATT--TTTAAATTTATTTAAATGATGTTTC---GGACAA--AATG-TTGTC-AATGTGC-A-GATTTTTAGCAGATGAA-AATTTT-AT-----T-CA-ATA-TTT--A-TCAGATAGTGGTGC-TGA---A---A-TT--GACCG---------------TAT--T-ATCAA-TCAAGA-TT----GT-CTATTTTT--AGATAGC----TGGT--CAc
gi|16 : ctgttaatgctggtgcttcccagagttctgtacatgT--TTTTA-TATATGTCAATGATGTTGC---TCATAA--TACG-TTATC-TTTTTGT-C-GGTTATATGTTGATTTC-AA-TT-----------CA-ATA-TGCGGA-T--AAGAATTTAAA-CAA---C---A-TA--GAATG---------------TGT--A-CTTAA-TCATGA-TCTT-AGaaaca
gi|17 : A---------------TAT--T-TTGAT-CCACAA-TTTA-GAT-GTA---TT--AGACAGA----TTGTCACATT-C--A----AGA-TTACTGC-TGGAATACAA-CCT-TCC-TAAGA---C-TAAA---G---C-----A----
gi|18 : A-AAAATGTAT-ATTACGTTTGTAAGACC-AATTTTA--GAAT-ATGCTTC---TG--TGGTATGGGT----AACAAAAT-TTTCGTCAATCA
gi|2 : GTTCTT--TTGAA-TCTATGGAAACGACGTAGC---TGAAAAATTATGATCATC-ATTATGT-A--ATTGTTTGCAGATGACCAA-TTC-AT-----TACACATGCTAC--A-TCATATAATATAGCCAAA---T---A-TT--GAATAACATTAAATCAAAATCAT--T-TTAAAATCACGAATTTA-AGTCATA---TTCAAGACAGA----TGGT--CATC-C--A----A---TG-CTACCTTAAATTTAACTCT-CTC-TAA-AA--C-T-AACACG---C-----A----TTATTTTTT-C-ACAAC-TAAG---GT----CAAATTAT-T-----TC-ACC----AAACTTCAA-TTTCA-CAATG-TATATTACTAATTCCTAGACATACTAACAAACATT--A-G-A-TTATTTTTAC-TTCAT-ATCT-AGTTG-TCTGAATACATTAACA--GT-ATAA-CA--AAAAAGGCTTATCAA-G--ATTAT-----TCTTC-GACAAAAATTAAA--TACATCATTGGTAGAAAAA-TTCATCCTATTCACAAAATGTATTACGACATT-ATTAGAC--ATTGCTT--GAATTACGCTTCAGTTGTT--GGATGG-TGTCCAATACAATATATTGG-AA-AAACTAgtcaattta
gi|22 : ATGATCTTAGTTGGTCTGAATACAT
gi|3 : GTTATT--TTTGA-TCTATGTGAACGACGTAGC---TGAAAA--TATG-ATATC-ATTATGT-A-GATTGTTTGCAGATGAC-AA-TTC-AT-----TACA-ATG-TAC--A-TCATATAATATAGC-AAA---T---A-TT--GAATA---------------CAT--T-TTGAA-TCACGA-TTTA-AGT-ATA---TT--AGACAGA----TGGT--CATC-C--A----A-A-TGGCTAC-TTAAATTTAA-TCC-CTC-TAA-A---C-T-AA---G---C-----A----T-ATTTTTT-C-ACA-C-TAAG---GT----CAAATTATGT-----TCTACC----A--CTTCAA-TTTCAGCAATG-TCCATTAG-AATTCTT-GACATC-TCACAAGCATTTAG-G-A-TTAGTTTT-TAGTCATGATCTTAGTTGGTCTGAA---ATTAACA--GG-ACAA-CA--AAAAAGGCTTATCAAAG--ATTAGG----TCTTCTGA-AAAAATTAAA-ATACATCATTTGTAGAAATA-CTC----TAT-CA-AAAATGTAT-ACGACATTTATAAGACC-ATTGCTT--GAAT-ACGCTTCAGTTGTTTGGGATGGGTGTCCAATACAATATATGGTAAATCAACTAAnnnnnnnnnnnnnnnnnnnnnnnnnat
gi|4 : TATT--ATTAA-TCTATGTCAATGATGTTGC---TGAAAA--TATC-ACGTA-TTCCTGT-A-GATTATATGCTGGTGAT-AA-CTC-AA-----TTCA-ATG-TGC--ACTTAGCTAAAACTTT-AAA---CGAAA-TT--GA-------------------AT--T-T---A-TCATGA-CCTC-AGC-GTC---CT--AGATGAA----TGGT--CA---A--A----A-A-TAGTTGT-TAAAGTTTAA-TCC-CTCTTAA-A---C-TAAA---G---CTGTAAG----T-AGTTTT-----CA-T-TGAACCTCT----CAAGTTATTT-----T-------------------TTTGAACATTG-TC----GG-AGTATGT-GACAGT-GCTCAGACACCTAGAG-G--------C-T-TT--TG-----AGCTGGTCCCGGCAAATAAATA--AA-TTGA-CA--AGTACAGCTTA-CAAAA--AGCAAGAATTTCTTTTT--AAAAATCAAATTTACTTTA--GGGAAAAAAACCTC----TTT-TT-AAAA--------------TGTAAGTCC-A--GCTTTAGAAT-ATACCTCCGTTGTTTGAGATGGATGT
gi|5 : GTTGTT--TTTGA-TATATGTCAATGTTGTTGC---TCATAA--TATG-TTATC-TTTCTGT-C-GGCTATATGCTGATGAC-AA-CTC-AT-----T-CA-ACA-TGC--ac
gi|6 : atactattttaatacttgccggccttctgccaggtccctacagtctaccaacttgattgaaactgatatcaatagccattgataaaatgatgatgaaatgtatgtgttatggttttaatgcgtctgtcaaaggcatttgacaaatcctggaagagtgcgtctttattacaacgtaatggaattggtggaattcttttccaatggtttaaaagctacttgtataatagaacaattaggttatggtatataatttttgcatagtaaacggtttgaaatgaatgctggagtgccacaaggttccgtccttggttcattATA-TTGCA-GTTTTGT-A-GATTATTTTCAGATGAC-CA-TTC-TT-----TACA-ACA-CAC--T-TGCAATAAT-TCAC-AAA-------A-TCAAGAAAA---------------AATAAT-TTAGA-TTA--A--TGA-CGT-ACA---TC--AGTTAGAAATTTGGT----TCAC--A----A-ACTGGATAC-TGCAACCTGA-TCC---------A---C---AA--------------------ATTTTTTAC-ACA-CATCAA---TA----CAAA-CACGC-----TGAAT-----G--TAT-TA-TTTCAGCAAAG-TTCCCTAG-AA-------ACACA-TCGTAAACAT------------ATTTC-T-CTCAggataagaatttgaacaacatagaatg
gi|7 : caaaattacaacgcaagtagaacattctaaaaaacaagtacgttatatgaagattgctctttcaaacattaaaccatatatgctggtgtccgtcttaggccattgttattgtcttaatacgtgtacgatgccagtgATCTTAGTTGGTCTGAATACATTAACGACGG-ACAAACA--AAAAAGGCTTATCAAAG--ATT-GG----TCTTCTGA-AAAAATTAAA-ATACATCATTTGTAGAAATA-CTC----TAT-CA-AAAATGTAT-ACGACATTTATAAGACC-ATTGCTT--GAAT-ACGCTTCAGTTGTTTGGGATGGGTGTCCAATACAATATATGGT-AATCAACTAAag
gi|8 : GTTTTT--TTTC--TATATGTAAATGATGTTTC---GGACAA--AATG-TTGTC-TATGTGC-A-GGCTTTTTGTGGATGAT-AA-TTCTAT-----T-CA-ATA-TTT--T-TCAAATAATATTGC-TTA---G---A-TA--GAAAA---------------TAT--TGTTAAA-T-ACGATTTTT-TTT-ATT---TT--AGAAAGA----TGGT--TGCT-T--AAAACA-A-TGGCTAC-TTCATTTTAA-CCC-CAG-CAA-T---T-T-AA---G---C-----AAAGTT-GCTTTTT-T-Attttcctctgtttcaaagttatatcggagattctgtgtagatttactgtatgactacctcacaccatattatataatcaaattaccatcacatgtgtatttacttcttttttcttctaatgtaactacaaattatcatgtctacttattgtaattagtatatattgacagttgt
gi|9 : atgtatctagatgaaggaaaatcacgttgtattttccaaggcctctgtacttgggcctttacA-TTTATATTTATGATGTTGCAAATGAAA---TG-G-TCA-C-TTTTTGC-A-GATTGTATGCAAATGAT-AA-CTC-AT-----TACA-ATA-TTC--C-TCTAATAATTTAAA-AAG---C---A-TT--GAA-A---------------CATG-T-TTAAA-
gi|9 : tcttTTTTT-T-ACA-A--AAA---AT----AAAAATATAG-----TTTATCTTAGG--CTT-AACTTTCAACAATG-TCAATTAC-AATTCGTAGAT-CA-ACACAAAAATGTAG-GCA-TTATTTTCTT-TTCCGGATCTAAGCTGGTCaaaaacactccaaatgctcaattttttacaaaaaataaaaatatagtttatcttaggcttaactttcaacaatgtcaattacaattcgtagatcaacacaaaaatgtaggcattattttcttttccggatctaagctggtcgcattatacaaat
6 sequences could not be aligned to this reference sequence:
Unaligned ( gi|10 ): TTACTCAGATACCTATATCGATTGTCATTTTGTTATGGGGAGATGAACAAACATGACATGTAAATCAACTAATTTTCCTTGTTCAAAAGTATATCAGAGATTCTGGTAGATTTACTGTATGACTACCCTCACATCATATTATATTAATCAAATACCATCACATGTGTATTACTTATTTTCTTTCTAATGTAACTACAAATTATCATGTCTTACTTATTGTAATTAGTATATATTGACAGTTG
Unaligned ( gi|15 ): AGGATATCTATTGGAGTGGTTTAAAAGCTATTCAAGTAACAGATCACAGAAAGTAATGTACAGAAACTTATTTTCTTCTATAAAACATACTAATGCAGGCCATGTACTTCGTCCACTTTTATTTTTGAT
Unaligned ( gi|19 ): TAACAGATCACAAAATGCAATGCACAGAAACTTGGTTTTTTTTTTCTGTAAAGCACAGGCAATGTAAATGTACCCAAAGGTTCT
Unaligned ( gi|20 ): GTATGCCTCAAGGGTCTGTACCAAGACCTTTCTTATTTTTGTTATACACGTACATAAATGATGAT
Unaligned ( gi|21 ): CTGATTTATAAATGATTTTGCAGATGAAATGGTCAGTTTTTGCAGATTGTACGCAGATGATA
Unaligned ( gi|23 ): ATCATTGTAGTAACATTTATTAAGAAATCTTTAC
Alignments
lowQualScore : 1111 11111 1111 1111111 222222222222222222 1111 111111111111111111 22222222222222 444444444444444444444444444444444444444 111 2222222222222222 7777777777777777777777777777 1 2222222222222 111 222222222 11111 1111 11 11 11 1111 11 2
lowQualScore : 1 55 3 0 5 1 2222 444 44 3 2 1 5 1 1 2 3 3 00000 6 3 0 3 1 0000 333 666666 7777777 4 99 999999999999999999 0000 2 3 4 777777777777777777 66 6 9999 77777777777777 777 0 5 22 5 444444444444444444444444444444444444444 555 4444444444444444 77 5555555555555555555555555555 4 6 999 6 2 3 7777 0000000000000 333 8 444444444 1 0 88888 7777 8 11 3 5 5 0 11 88 0 88 0 8 0 1 1 8 7777 8 6 6 2 3 6 3 2 55 6 3 0 0 3 1 0 3
lowQualScore : . .. . . . . .... ... .. . . . . . . . . . ..... . . . . . .... ... ...... ....... . .. .................. .... . . . .................. .. . .... .............. ... . . .. . ....................................... ... ................ .. ............................ . . ... . . . .... ............. ... . ......... . . ..... .... . .. . . . . .. .. . .. . . . . . . .... . . . . . . . . .. . . . . . . . .
lowQualScore : 4 00 1 5 9 1 2222 999 22 1 9 0 7 0 1 9 1 1 88888 2 3 1 3 0 0000 333 666666 2222222 0 55 222222222222222222 1111 6 6 0 000000000000000000 11 4 4444 88888888888888 111 2 0 44 0 000000000000000000000000000000000000000 333 2222222222222222 77 0000000000000000000000000000 2 7 888 7 5 3 2222 8888888888888 555 9 888888888 0 8 44444 0000 0 00 2 6 6 8 00 66 8 88 8 0 8 0 4 0 0000 0 7 7 5 2 7 5 5 88 7 2 8 8 2 0 0 2
consensus : GTTGTT--TTTGA-TATATGTCAATGACGTTGC---TGA--AAA--TATG-TTATCT-TTNTGT-AGATTATNTGCAGATGAC-AA-TTC-AT-----TACA-ATA-TNC--A-TCAAATAATATAGC-AAA---C---A-TT--GAANA---------------CAT--T-TTAAA-TCA-CGA-T--TTA-AGT-ATA---TT--AGACAGA----TGGT--CATCC--A----A-A-TGGCTAC-TGNAATTTAA-TCC-CNC-TAA-A---C-T-AA---G---C-----A----T-ATTTTTT-C-ACA-C-TAAA---NT----CAAATTATGT-----TCTATC----G--CTT-AA-TTTCAACAATG-TCCATTAG-AATTCGT-GACACA-TCACAAACATTTAG-G-A-TTANTTTC-T-TTCATGATCTTAGTTGGTCC--------GAATACATTAACA--GGTACA----A-CA--AAAAAGGCTTATCAAAG--ATTAGGTCTTCTGA-AAAAATTAAA-ATACATCATTNGTAGAAAAA-CT----CTA-TCA-AAAATGTA-TACGACATTTGTAAGACC-ATTGCTT--GAA-TACGCTTCAGTTGTTTGGGATGGGTGTCCAATACAATATATNGT-AATCAACTAA
Reference ( family-92 ) : GTTGTT--TTTGA-TATATGTCAATGACGTTGC---TGA--AAA--TATG-TTATCT-TTNTGT-AGATTATNTGCAGATGAC-AA-TTC-AT-----TACA-ATA-TNC--A-TCAAATAATATAGC-AAA---C---A-TT--GAANA---------------CAT--T-TTAAA-TCA-CGA-T--TTA-AGT-ATA---TT--AGACAGA----TGGT--CATCC--A----A-A-TGGCTAC-TGNAATTTAA-TCC-CNC-TAA-A---C-T-AA---G---C-----A----T-ATTTTTT-C-ACA-C-TAAA---NT----CAAATTATGT-----TCTATC----G--CTT-AA-TTTCAACAATG-TCCATTAG-AATTCGT-GACACA-TCACAAACATTTAG-G-A-TTANTTTC-T-TTCATGATCTTAGTTGGTCC--------GAATACATTAACA--GG-ACA----A-CA--AAAAAGGCTTATCAAAG--ATTAGGTCTTCTGA-AAAAATTAAA-ATACATCATTNGTAGAAAAA-CT----CTA-TCA-AAAATGTA-TACGACATTTGTAAGACC-ATTGCTT--GAA-TACGCTTCAGTTGTTTGGGATGGGTGTCCAATACAATATATNGT-AATCAACTAA
gi|1 : GCTATT--TTTAA-TATATGTCAATGATATTGC---AGA--AAA--AATG-TTATCT-TTCTGCAAGATTATTTGCAGATGAC-AA-TTC-TT-----TACA-GCA-CAC--C-TGTAATAATTTA-C-AAG---C---G-CTA-GAAAA---------------CAA--T-TTAAA-TCA-TGA-T--TTACAAC-A-G---TT--AGA-AAT----TTGT--C--CCAAA----A-A-TGGTTAC-TGCAATTTAA-TCCACAA-AAA-A---CAA-AA---G---CA----A----T-ATCTTTTACAACA-C--AAA---ATAATACAAA-CA-GTCCGAATCTATC------------A-TTTCAACAAAGTTCCA-TAG-AATTCGT-TACGCA-TCATAAACACTTAG-G-AGTTACTTTC-T-CTCAAGATCTAAGTTGGTCC--------T-ATATAT--ATA--GATACA----A-TACTAGCAAAGC-TA--AAAGAAAATGGGT-TAATGA-AAAAGTTAAA-GTTTAAAATTAGCCGAAAAT-CG----TTA-TCA-TTAATGTA-TACTACATCTGTTAGACCTATT--TTA-GAA-TATGCATCAG
gi|11 : ggttaaagttaccttgaagacagaacacaaaaagtattatacagagaagctctttcaagcacaaaaccactatttgctggtgtccctcaagggtctgtactaggacctttTTGTTATTTTGA-TATATGTCAATAATGTTGC---AGG--TAA--GATG-TTATTT-TTACATCACACTAAGT-C---TTAC-AA-TAA-AT-----TACA-A----CC--A--CAG-----AGAGC-AAATTTC---AGTT--GGA-A---------------CAT------------A-CAA-TAATGA-AAT-AT--------------A----TGGT--C--CC--AAT--A-A-TCATCAC-TGCAATTGAA-GCC-C-C-AAA-AGGCC-G-AA---AATCC-----A----T-ATTTTT
gi|12 : tttcaaacataagacctttctaagctggtgtccctctatggttggtaataggaccaTTGTT--TTTGA-TATACGTTAATGACA-TACA--TGA--AAA--TTTG-TTATCTGTTTTGT-GAACTATATGCAGATGAT-AA-TAC-ATGTACCTACA-ACA-
gi|13 : gaaaatcttttagaatggtttaaaagctattcaagtaacagatcacagaaagtaatgtacagcaactaatttcttctataaaacacacttatgcaggtgtaccccaccccaaggctctgtacatggtccaactTTGTT--TTTGA-TATACGTTAATGACA-TACA--TGA--AAA--TATG-TTATCT-GTTTGT-GAACTATATGCAGATGAT-AA-TAC-ATG----TACaagttcaca
gi|14 : gaaaatcttttagaatggtttaaaagctattcaagtaacagatcacagaaagtaatgtacagcaactaattttcttctataaaacacacttatgcaggtgtaccccaccccaaggctctgtacatggtccaactTATT--TTTAAATTTATTTAAATGATGTTTC---GGA--CAA--AATG-TTGTCA-ATGTGC-AGATTTTTAGCAGATGAA-AATTTT-AT-----T-CA-ATA-TTT--A-TCAGATAGTGGTGC-TGA---A---A-TT--GACCG---------------TAT--T-ATCAA-TCA-AGA-T--T----GT-CTATTTTT--AGATAGC----TGGT--CAc
gi|16 : ctgttaatgctggtgcttcccagagttctgtacatgT--TTTTA-TATATGTCAATGATGTTGC---TCA--TAA--TACG-TTATCT-TTTTGT-CGGTTATATGTTGATTTC-AA-TT-----------CA-ATA-TGCGGA-T--AAGAATTTAAA-CAA---C---A-TA--GAATG---------------TGT--A-CTTAA-TCA-TGA-T--CTT-AGaaaca
gi|17 : A---------------TAT--T-TTGAT-CCA-CAA-T--TTA-GAT-GTA---TT--AGACAGA----TTGTCACATTC--A----AGA-TTACTGC-TGGAATACAA-CCT-TCC-TAAGA---C-TAAA---G---C-----A----
gi|18 : A-AAAATGTA-TATTACGTTTGTAAGACC-AATTTTA--GAA-TATGCTTC---TG--TGGTATGGGT----AACAAAAT-TTTCGTCAATCA
gi|2 : GTTCTT--TTGAA-TCTATGGAAACGACGTAGC---TGA--AAAATTATGATCATCA-TTATGT-A-ATTGTTTGCAGATGACCAA-TTC-AT-----TACACATGCTAC--A-TCATATAATATAGCCAAA---T---A-TT--GAATAACATTAAATCAAAATCAT--T-TTAAAATCA-CGAAT--TTA-AGTCATA---TTCAAGACAGA----TGGT--CATCC--A----A---TG-CTACCTTAAATTTAACTCT-CTC-TAA-AA--C-T-AACACG---C-----A----TTATTTTTT-C-ACAAC-TAAG---GT----CAAATTAT-T-----TC-ACC----AAACTTCAA-TTTCA-CAATG-TATATTACTAATTCCTAGACATACTAACAAACATT--A-G-A-TTATTTTTAC-TTCAT-ATCT-AGTTG-TCT--------GAATACATTAACA--GT-ATA----A-CA--AAAAAGGCTTATC-AAG--ATTA-TTCTTC-GACAAAAATT-AA-ATACATCATTGGTAGAAAAA-TTCATCCTATTCACAAAATGTATTACGACA-TTATTAGA-C-ATTGCTT--GAATTACGCTTCAGTTGTT--GGAT-GGTGTCCAATACAATATATTGG-AA-AAACTAgtcaattta
gi|21 : TGA-TTTATA--AATGATTTTGC---AGATGAAA--TG-G-TCAG-T-TTTTGC-AGATTGTACGCAGATGAT-A
gi|22 : cATGATCTTAGTTGGTCT--------GAATACAT
gi|3 : GTTATT--TTTGA-TCTATGTGAACGACGTAGC---TGA--AAA--TATG-ATATCA-TTATGT-AGATTGTTTGCAGATGAC-AA-TTC-AT-----TACA-ATG-TAC--A-TCATATAATATAGC-AAA---T---A-TT--GAATA---------------CAT--T-TTGAA-TCA-CGA-T--TTA-AGT-ATA---TT--AGACAGA----TGGT--CATCC--A----A-A-TGGCTAC-TTAAATTTAA-TCC-CTC-TAA-A---C-T-AA---G---C-----A----T-ATTTTTT-C-ACA-C-TAAG---GT----CAAATTATGT-----TCTACC----A--CTTCAA-TTTCAGCAATG-TCCATTAG-AATTCTT-GACATC-TCACAAGCATTTAG-G-A-TTAGTTTT-TAGTCATGATCTTAGTTGGTCT--------GAA---ATTAACA--GG-ACA----A-CA--AAAAAGGCTTATCAAAG--ATTAGGTCTTCTGA-AAAAATTAAA-ATACATCATTTGTAGAAATA-CT----CTA-TCA-AAAATGTA-TACGACATTTATAAGACC-ATTGCTT--GAA-TACGCTTCAGTTGTTTGGGATGGGTGTCCAATACAATATATGGTAAATCAACTAAnnnnnnnnnnnnnnnnnnnnnnnnnat
gi|4 : TATT--ATTAA-TCTATGTCAATGATGTTGC---TGA--AAA--TATC-ACGTAT-TCCTGT-AGATTATATGCTGGTGAT-AA-CTC-AA-----TTCA-ATG-TGC--ACTTAGCTAAAACTTT-AAA---CGAAA-TT--GA-------------------AT--T-T---A-TCA-TGA-C--CTC-AGC-GTC---CT--AGATGAA----TGGT--CA--A--A----A-A-TAGTTGT-TAAAGTTTAA-TCC-CTCTTAA-A---C-TAAA---G---CTGTAAG----T-AGTTTT-----CA-T-TGAACCTCT----CAAGTTATTT-----T-------------------TTTGAACATTG-TC----GG-AGTATGT-GACAGT-GCTCAGACACCTAGAG-G--------C-T-TT--TG-----AGCTGGTCCCGGCAAATAAATAAATTGACA--AGTACAGCTTA-CA--AAAAG-------CAAGA--ATT---TCTTTTT--AAAAATCAAATTTACTTTA--GGGAAAAAAACCT----CTT-TTT-AAAA--------------TGTAAGTCC-A--GCTTTAGAA-TATACCTCCGTTGTTTGAGATGGATGT
gi|5 : GTTGTT--TTTGA-TATATGTCAATGTTGTTGC---TCA--TAA--TATG-TTATCT-TTCTGT-CGGCTATATGCTGATGAC-AA-CTC-AT-----T-CA-ACA-TGC--ac
gi|6 : atactattttaatacttgccggccttctgccaggtccctacagtctaccaacttgattgaaactgatatcaatagccattgataaaatgatgatgaaatgtatgtgttatggttttaatgcgtctgtcaaaggcatttgacaaatcctggaagagtgcgtctttattacaacgtaatggaattggtggaattcttttccaatggtttaaaagctacttgtataatagaacaattaggttatggtatataatttttgcatagtaaacggtttgaaatgaatgctggagtgccacaaggttccgtccttggttcatt-TTTTGT-AGATTATTTTCAGATGAC-CA-TTC-TT-----TACA-ACA-CAC--T-TGCAATAAT-TCAC-AAA-------A-TCAAGAAAA---------------AATAAT-TTAGA-TTAATGA-C-------GT-ACA---TC--AGTTAGAAATTTGGTT-CA--C--A----A-ACTGGATAC-TGCAACCTGA-TCC---------A---C---AA--------------------ATTTTTTAC-ACA-CATCAA---TA----CAAAC-ACGC-----TGAAT-----G--TAT-TA-TTTCAGCAAAG-TTCCCTAG-AA-------ACACA-TCGTAAACAT------------ATTTC-T-CTCAggataagaatttgaacaacatagaatg
gi|7 : caaaattacaacgcaagtagaacattctaaaaaacaagtacgttatatgaagattgctctttcaaacattaaaccatatatgctggtgtccgtcttaggccattgttattgtcttaatacgtgtacgatgccagtgatattgcagATCTTAGTTGGTCT--------GAATACATTAACGACGG-ACA----AACA--AAAAAGGCTTATCAAAG--ATT-GGTCTTCTGA-AAAAATTAAA-ATACATCATTTGTAGAAATA-CT----CTA-TCA-AAAATGTA-TACGACATTTATAAGACC-ATTGCTT--GAA-TACGCTTCAGTTGTTTGGGATGGGTGTCCAATACAATATATGGT-AATCAACTAAag
gi|8 : GTTTTT--TTTC--TATATGTAAATGATGTTTC---GGA--CAA--AATG-TTGTCT-ATGTGC-AGGCTTTTTGTGGATGAT-AA-TTCTAT-----T-CA-ATA-TTT--T-TCAAATAATATTGC-TTA---G---A-TA--GAAAA---------------TAT--TGTTAAA-T-A-CGATT--TTT-TTT-ATT---TT--AGAAAGA----TGGT--TGCTT--AAAACA-A-TGGCTAC-TTCATTTTAA-CCC-CAG-CAA-T---T-T-AA---G---C-----AAAGTT-GCTTTTT-T-Attttcctctgtttcaaagttatatcggagattctgtgtagatttactgtatgactacctcacaccatattatataatcaaattaccatcacatgtgtatttacttcttttttcttctaatgtaactacaaattatcatgtctacttattgtaattagtatatattgacagttgt
gi|9 : atgtatctagatgaaggaaaatcacgttgtattttccaaggcctctgtacttgggcctttac-TATATTT--ATGATGTTGCAAATGA--AA---TG-G-TCA-CT-TTTTGC-AGATTGTATGCAAATGAT-AA-CTC-AT-----TACA-ATA-TTC--C-TCTAATAATTTAAA-AAG---C---A-TT--GAA-A---------------CATG-T-TTAAA-
gi|9 : tcttattTTTTT-T-ACA-A--AAA---AT----AAAAATATAG-----TTTATCTTAGG--CTT-AACTTTCAACAATG-TCAATTAC-AATTCGTAGAT-CA-ACACAAAAATGTAG-GCA-TTATTTTCTT-TTCCGGATCTAAGCTGGTCaaaaacactccaaatgctcaattttttacaaaaaataaaaatatagtttatcttaggcttaactttcaacaatgtcaattacaattcgtagatcaacacaaaaatgtaggcattattttcttttccggatctaagctggtcgcattatacaaat
5 sequences could not be aligned to this reference sequence:
Unaligned ( gi|10 ): TTACTCAGATACCTATATCGATTGTCATTTTGTTATGGGGAGATGAACAAACATGACATGTAAATCAACTAATTTTCCTTGTTCAAAAGTATATCAGAGATTCTGGTAGATTTACTGTATGACTACCCTCACATCATATTATATTAATCAAATACCATCACATGTGTATTACTTATTTTCTTTCTAATGTAACTACAAATTATCATGTCTTACTTATTGTAATTAGTATATATTGACAGTTG
Unaligned ( gi|15 ): AGGATATCTATTGGAGTGGTTTAAAAGCTATTCAAGTAACAGATCACAGAAAGTAATGTACAGAAACTTATTTTCTTCTATAAAACATACTAATGCAGGCCATGTACTTCGTCCACTTTTATTTTTGAT
Unaligned ( gi|19 ): TAACAGATCACAAAATGCAATGCACAGAAACTTGGTTTTTTTTTTCTGTAAAGCACAGGCAATGTAAATGTACCCAAAGGTTCT
Unaligned ( gi|20 ): GTATGCCTCAAGGGTCTGTACCAAGACCTTTCTTATTTTTGTTATACACGTACATAAATGATGAT
Unaligned ( gi|23 ): ATCATTGTAGTAACATTTATTAAGAAATCTTTAC
Alignments
lowQualScore : 1111 11111 1111 1111111 222222222222222222 1111 111111111111111111 22222222222222 444444444444444444444444444444444444444 111 2222222222222222 7777777777777777777777777777 1 2222222222222 111 222222222 1111 11 11 111 11 1111 11 2
lowQualScore : 1 55 3 0 5 1 2222 444 44 3 2 1 5 1 1 2 3 3 00000 6 3 0 3 1 0000 333 666666 7777777 4 99 999999999999999999 0000 2 3 4 777777777777777777 66 6 9999 77777777777777 777 0 5 22 5 444444444444444444444444444444444444444 555 4444444444444444 77 5555555555555555555555555555 4 6 999 6 2 3 7777 0000000000000 333 8 444444444 1 0 8 88 7777 8 11 3 5 5 3 11 888 0 88 77 0 1 1 8 7777 8 6 6 2 3 6 3 2 55 6 3 0 0 3 1 0 3
lowQualScore : . .. . . . . .... ... .. . . . . . . . . . ..... . . . . . .... ... ...... ....... . .. .................. .... . . . .................. .. . .... .............. ... . . .. . ....................................... ... ................ .. ............................ . . ... . . . .... ............. ... . ......... . . . .. .... . .. . . . . .. ... . .. .. . . . . .... . . . . . . . . .. . . . . . . . .
lowQualScore : 4 00 1 5 9 1 2222 999 22 1 9 0 7 0 1 9 1 1 88888 2 3 1 3 0 0000 333 666666 2222222 0 55 222222222222222222 1111 6 6 0 000000000000000000 11 4 4444 88888888888888 111 2 0 44 0 000000000000000000000000000000000000000 333 2222222222222222 77 0000000000000000000000000000 2 7 888 7 5 3 2222 8888888888888 555 9 888888888 0 8 0 88 0000 0 00 2 6 6 8 00 666 8 88 00 8 0 4 0 0000 0 7 7 5 2 7 5 5 88 7 2 8 8 2 0 0 2
consensus : GTTGTT--TTTGA-TATATGTCAATGACGTTGC---TGA--AAA--TATG-TTATCT-TTNTGT-AGATTATNTGCAGATGAC-AA-TTC-AT-----TACA-ATA-TNC--A-TCAAATAATATAGC-AAA---C---A-TT--GAANA---------------CAT--T-TTAAA-TCA-CGA-T--TTA-AGT-ATA---TT--AGACAGA----TGGT--CATCC--A----A-A-TGGCTAC-TGNAATTTAA-TCC-CNC-TAA-A---C-T-AA---G---C-----A----T-ATTTTTT-C-ACA-C-TAAA---NT----CAAATTATGT-----TCTATC----G--CTT-AA-TTTCAACAATG-TCCATTAG-AATTCGT-GACACA-TCACAAACATTTAG-G-A-TTANTTTC-T-TTCATGATCTTAGTTGGTCC--------GAATACATTAAC-AGGTACA----A-CA--AAAAAGGCTTATCAAAG--ATTAGGTCTTCTGA-AAAAATTAAA-ATACATCATTNGTAGAAAAA-CT----CTA-TCA-AAAATGTA-TACGACATTTGTAAGACC-ATTGCTT--GAA-TACGCTTCAGTTGTTTGGGATGGGTGTCCAATACAATATATNGT-AATCAACTAA
Reference ( family-92 ) : GTTGTT--TTTGA-TATATGTCAATGACGTTGC---TGA--AAA--TATG-TTATCT-TTNTGT-AGATTATNTGCAGATGAC-AA-TTC-AT-----TACA-ATA-TNC--A-TCAAATAATATAGC-AAA---C---A-TT--GAANA---------------CAT--T-TTAAA-TCA-CGA-T--TTA-AGT-ATA---TT--AGACAGA----TGGT--CATCC--A----A-A-TGGCTAC-TGNAATTTAA-TCC-CNC-TAA-A---C-T-AA---G---C-----A----T-ATTTTTT-C-ACA-C-TAAA---NT----CAAATTATGT-----TCTATC----G--CTT-AA-TTTCAACAATG-TCCATTAG-AATTCGT-GACACA-TCACAAACATTTAG-G-A-TTANTTTC-T-TTCATGATCTTAGTTGGTCC--------GAATACATTAAC-AGGTACA----A-CA--AAAAAGGCTTATCAAAG--ATTAGGTCTTCTGA-AAAAATTAAA-ATACATCATTNGTAGAAAAA-CT----CTA-TCA-AAAATGTA-TACGACATTTGTAAGACC-ATTGCTT--GAA-TACGCTTCAGTTGTTTGGGATGGGTGTCCAATACAATATATNGT-AATCAACTAA
gi|1 : GCTATT--TTTAA-TATATGTCAATGATATTGC---AGA--AAA--AATG-TTATCT-TTCTGCAAGATTATTTGCAGATGAC-AA-TTC-TT-----TACA-GCA-CAC--C-TGTAATAATTTA-C-AAG---C---G-CTA-GAAAA---------------CAA--T-TTAAA-TCA-TGA-T--TTACAAC-A-G---TT--AGA-AAT----TTGT--C--CCAAA----A-A-TGGTTAC-TGCAATTTAA-TCCACAA-AAA-A---CAA-AA---G---CA----A----T-ATCTTTTACAACA-C--AAA---ATAATACAAA-CA-GTCCGAATCTATC------------A-TTTCAACAAAGTTCCA-TAG-AATTCGT-TACGCA-TCATAAACACTTAG-G-AGTTACTTTC-T-CTCAAGATCTAAGTTGGTCC--------T-ATATAT--AT-AGATACA----A-TACTAGCAAAGC-TA--AAAGAAAATGGGT-TAATGA-AAAAGTTAAA-GTTTAAAATTAGCCGAAAAT-CG----TTA-TCA-TTAATGTA-TACTACATCTGTTAGACCTATT--TTA-GAA-TATGCATCAG
gi|11 : ggttaaagttaccttgaagacagaacacaaaaagtattatacagagaagctctttcaagcacaaaaccactatttgctggtgtccctcaagggtctgtactaggacctttTTGTTATTTTGA-TATATGTCAATAATGTTGC---AGG--TAA--GATG-TTATTT-TTACATCACACTAAGT-C---TTAC-AA-TAA-AT-----TACA-A----CC--A--CAG-----AGAGC-AAATTTC---AGTT--GGA-A---------------CAT------------A-CAA-TAATGA-AAT-AT--------------A----TGGT--C--CC--AAT--A-A-TCATCAC-TGCAATTGAA-GCC-C-C-AAA-AGGCC-G-AA---AATCC-----A----T-ATTTTT
gi|12 : tttcaaacataagacctttctaagctggtgtccctctatggttggtaataggaccaTTGTT--TTTGA-TATACGTTAATGACA-TACA--TGA--AAA--TTTG-TTATCTGTTTTGT-GAACTATATGCAGATGAT-AA-TAC-ATGTACCTACA-ACA-
gi|13 : gaaaatcttttagaatggtttaaaagctattcaagtaacagatcacagaaagtaatgtacagcaactaatttcttctataaaacacacttatgcaggtgtaccccaccccaaggctctgtacatggtccaactTTGTT--TTTGA-TATACGTTAATGACA-TACA--TGA--AAA--TATG-TTATCT-GTTTGT-GAACTATATGCAGATGAT-AA-TAC-ATG----TACaagttcaca
gi|14 : gaaaatcttttagaatggtttaaaagctattcaagtaacagatcacagaaagtaatgtacagcaactaattttcttctataaaacacacttatgcaggtgtaccccaccccaaggctctgtacatggtccaactTATT--TTTAAATTTATTTAAATGATGTTTC---GGA--CAA--AATG-TTGTCA-ATGTGC-AGATTTTTAGCAGATGAA-AATTTT-AT-----T-CA-ATA-TTT--A-TCAGATAGTGGTGC-TGA---A---A-TT--GACCG---------------TAT--T-ATCAA-TCA-AGA-T--T----GT-CTATTTTT--AGATAGC----TGGT--CAc
gi|16 : ctgttaatgctggtgcttcccagagttctgtacatgT--TTTTA-TATATGTCAATGATGTTGC---TCA--TAA--TACG-TTATCT-TTTTGT-CGGTTATATGTTGATTTC-AA-TT-----------CA-ATA-TGCGGA-T--AAGAATTTAAA-CAA---C---A-TA--GAATG---------------TGT--A-CTTAA-TCA-TGA-T--CTT-AGaaaca
gi|17 : A---------------TAT--T-TTGAT-CCA-CAA-T--TTA-GAT-GTA---TT--AGACAGA----TTGTCACATTC--A----AGA-TTACTGC-TGGAATACAA-CCT-TCC-TAAGA---C-TAAA---G---C-----A----
gi|18 : A-AAAATGTA-TATTACGTTTGTAAGACC-AATTTTA--GAA-TATGCTTC---TG--TGGTATGGGT----AACAAAAT-TTTCGTCAATCA
gi|2 : GTTCTT--TTGAA-TCTATGGAAACGACGTAGC---TGA--AAAATTATGATCATCA-TTATGT-A-ATTGTTTGCAGATGACCAA-TTC-AT-----TACACATGCTAC--A-TCATATAATATAGCCAAA---T---A-TT--GAATAACATTAAATCAAAATCAT--T-TTAAAATCA-CGAAT--TTA-AGTCATA---TTCAAGACAGA----TGGT--CATCC--A----A---TG-CTACCTTAAATTTAACTCT-CTC-TAA-AA--C-T-AACACG---C-----A----TTATTTTTT-C-ACAAC-TAAG---GT----CAAATTAT-T-----TC-ACC----AAACTTCAA-TTTCA-CAATG-TATATTACTAATTCCTAGACATACTAACAAACATT--A-G-A-TTATTTTTAC-TTCAT-ATCT-AGTTG-TCT--------GAATACATTAAC-AG-TATA----A-CA--AAAAAGGCTTATCAA-G--ATTAT-TCTTC-GACAAAAATTAAA--TACATCATTGGTAGAAAAA-TTCATCCTATTCACAAAATGTATTACGACA-TTATTAGA-C-ATTGCTT--GAATTACGCTTCAGTTGTT--GGAT-GGTGTCCAATACAATATATTGG-AA-AAACTAgtcaattta
gi|21 : TGA-TTTATA--AATGATTTTGC---AGATGAAA--TG-G-TCAG-T-TTTTGC-AGATTGTACGCAGATGAT-A
gi|22 : cATGATCTTAGTTGGTCT--------GAATACAT
gi|3 : GTTATT--TTTGA-TCTATGTGAACGACGTAGC---TGA--AAA--TATG-ATATCA-TTATGT-AGATTGTTTGCAGATGAC-AA-TTC-AT-----TACA-ATG-TAC--A-TCATATAATATAGC-AAA---T---A-TT--GAATA---------------CAT--T-TTGAA-TCA-CGA-T--TTA-AGT-ATA---TT--AGACAGA----TGGT--CATCC--A----A-A-TGGCTAC-TTAAATTTAA-TCC-CTC-TAA-A---C-T-AA---G---C-----A----T-ATTTTTT-C-ACA-C-TAAG---GT----CAAATTATGT-----TCTACC----A--CTTCAA-TTTCAGCAATG-TCCATTAG-AATTCTT-GACATC-TCACAAGCATTTAG-G-A-TTAGTTTT-TAGTCATGATCTTAGTTGGTCT--------GAA---ATTAAC-AGG-ACA----A-CA--AAAAAGGCTTATCAAAG--ATTAGGTCTTCTGA-AAAAATTAAA-ATACATCATTTGTAGAAATA-CT----CTA-TCA-AAAATGTA-TACGACATTTATAAGACC-ATTGCTT--GAA-TACGCTTCAGTTGTTTGGGATGGGTGTCCAATACAATATATGGTAAATCAACTAAnnnnnnnnnnnnnnnnnnnnnnnnnat
gi|4 : TATT--ATTAA-TCTATGTCAATGATGTTGC---TGA--AAA--TATC-ACGTAT-TCCTGT-AGATTATATGCTGGTGAT-AA-CTC-AA-----TTCA-ATG-TGC--ACTTAGCTAAAACTTT-AAA---CGAAA-TT--GA-------------------AT--T-T---A-TCA-TGA-C--CTC-AGC-GTC---CT--AGATGAA----TGGT--CA--A--A----A-A-TAGTTGT-TAAAGTTTAA-TCC-CTCTTAA-A---C-TAAA---G---CTGTAAG----T-AGTTTT-----CA-T-TGAACCTCT----CAAGTTATTT-----T-------------------TTTGAACATTG-TC----GG-AGTATGT-GACAGT-GCTCAGACACCTAGAG-G--------C-T-TT--TG-----AGCTGGTCCCGGCAAATAAATAAATTGAC-AAGTACAGCTTA-CA--AAAAG-------CAAGA--ATT---TCTTTTT--AAAAATCAAATTTACTTTA--GGGAAAAAAACCT----CTT-TTT-AAAA--------------TGTAAGTCC-A--GCTTTAGAA-TATACCTCCGTTGTTTGAGATGGATGT
gi|5 : GTTGTT--TTTGA-TATATGTCAATGTTGTTGC---TCA--TAA--TATG-TTATCT-TTCTGT-CGGCTATATGCTGATGAC-AA-CTC-AT-----T-CA-ACA-TGC--ac
gi|6 : atactattttaatacttgccggccttctgccaggtccctacagtctaccaacttgattgaaactgatatcaatagccattgataaaatgatgatgaaatgtatgtgttatggttttaatgcgtctgtcaaaggcatttgacaaatcctggaagagtgcgtctttattacaacgtaatggaattggtggaattcttttccaatggtttaaaagctacttgtataatagaacaattaggttatggtatataatttttgcatagtaaacggtttgaaatgaatgctggagtgccacaaggttccgtccttggttcatt-TTTTGT-AGATTATTTTCAGATGAC-CA-TTC-TT-----TACA-ACA-CAC--T-TGCAATAAT-TCAC-AAA-------A-TCAAGAAAA---------------AATAAT-TTAGA-TTAATGA-C-------GT-ACA---TC--AGTTAGAAATTTGGTT-CA--C--A----A-ACTGGATAC-TGCAACCTGA-TCC---------A---C---AA--------------------ATTTTTTAC-ACA-CATCAA---TA----CAAAC-ACGC-----TGAAT-----G--TAT-TA-TTTCAGCAAAG-TTCCCTAG-AA-------ACACA-TCGTAAACAT------------ATTTC-T-CTCAggataagaatttgaacaacatagaatg
gi|7 : caaaattacaacgcaagtagaacattctaaaaaacaagtacgttatatgaagattgctctttcaaacattaaaccatatatgctggtgtccgtcttaggccattgttattgtcttaatacgtgtacgatgccagtgatattgcagATCTTAGTTGGTCT--------GAATACATTAACGACGGACA----AACA--AAAAAGGCTTATCAAAG--ATT-GGTCTTCTGA-AAAAATTAAA-ATACATCATTTGTAGAAATA-CT----CTA-TCA-AAAATGTA-TACGACATTTATAAGACC-ATTGCTT--GAA-TACGCTTCAGTTGTTTGGGATGGGTGTCCAATACAATATATGGT-AATCAACTAAag
gi|8 : GTTTTT--TTTC--TATATGTAAATGATGTTTC---GGA--CAA--AATG-TTGTCT-ATGTGC-AGGCTTTTTGTGGATGAT-AA-TTCTAT-----T-CA-ATA-TTT--T-TCAAATAATATTGC-TTA---G---A-TA--GAAAA---------------TAT--TGTTAAA-T-A-CGATT--TTT-TTT-ATT---TT--AGAAAGA----TGGT--TGCTT--AAAACA-A-TGGCTAC-TTCATTTTAA-CCC-CAG-CAA-T---T-T-AA---G---C-----AAAGTT-GCTTTTT-T-Attttcctctgtttcaaagttatatcggagattctgtgtagatttactgtatgactacctcacaccatattatataatcaaattaccatcacatgtgtatttacttcttttttcttctaatgtaactacaaattatcatgtctacttattgtaattagtatatattgacagttgt
gi|9 : atgtatctagatgaaggaaaatcacgttgtattttccaaggcctctgtacttgggcctttac-TATATTT--ATGATGTTGCAAATGA--AA---TG-G-TCA-CT-TTTTGC-AGATTGTATGCAAATGAT-AA-CTC-AT-----TACA-ATA-TTC--C-TCTAATAATTTAAA-AAG---C---A-TT--GAA-A---------------CATG-T-TTAAA-
gi|9 : tcttattTTTTT-T-ACA-A--AAA---AT----AAAAATATAG-----TTTATCTTAGG--CTT-AACTTTCAACAATG-TCAATTAC-AATTCGTAGAT-CA-ACACAAAAATGTAG-GCA-TTATTTTCTT-TTCCGGATCTAAGCTGGTCaaaaacactccaaatgctcaattttttacaaaaaataaaaatatagtttatcttaggcttaactttcaacaatgtcaattacaattcgtagatcaacacaaaaatgtaggcattattttcttttccggatctaagctggtcgcattatacaaat
5 sequences could not be aligned to this reference sequence:
Unaligned ( gi|10 ): TTACTCAGATACCTATATCGATTGTCATTTTGTTATGGGGAGATGAACAAACATGACATGTAAATCAACTAATTTTCCTTGTTCAAAAGTATATCAGAGATTCTGGTAGATTTACTGTATGACTACCCTCACATCATATTATATTAATCAAATACCATCACATGTGTATTACTTATTTTCTTTCTAATGTAACTACAAATTATCATGTCTTACTTATTGTAATTAGTATATATTGACAGTTG
Unaligned ( gi|15 ): AGGATATCTATTGGAGTGGTTTAAAAGCTATTCAAGTAACAGATCACAGAAAGTAATGTACAGAAACTTATTTTCTTCTATAAAACATACTAATGCAGGCCATGTACTTCGTCCACTTTTATTTTTGAT
Unaligned ( gi|19 ): TAACAGATCACAAAATGCAATGCACAGAAACTTGGTTTTTTTTTTCTGTAAAGCACAGGCAATGTAAATGTACCCAAAGGTTCT
Unaligned ( gi|20 ): GTATGCCTCAAGGGTCTGTACCAAGACCTTTCTTATTTTTGTTATACACGTACATAAATGATGAT
Unaligned ( gi|23 ): ATCATTGTAGTAACATTTATTAAGAAATCTTTAC
Alignments
lowQualScore : 1111 11111 1111 1111111 222222222222222222 1111 111111111111111111 22222222222222 444444444444444444444444444444444444444 111 2222222222222222 7777777777777777777777777777 1 2222222222222 111 222222222 1111 11 11 111 11 1111 11 2
lowQualScore : 1 55 3 0 5 1 2222 444 44 3 2 1 5 1 1 2 3 3 00000 6 3 0 3 1 0000 333 666666 7777777 4 99 999999999999999999 0000 2 3 4 777777777777777777 66 6 9999 77777777777777 777 0 5 22 5 444444444444444444444444444444444444444 555 4444444444444444 77 5555555555555555555555555555 4 6 999 6 2 3 7777 0000000000000 333 8 444444444 1 0 8 88 7777 8 11 3 5 5 3 11 888 0 88 77 0 1 1 8 7777 8 6 6 2 3 6 3 2 55 6 3 0 0 3 1 0 3
lowQualScore : . .. . . . . .... ... .. . . . . . . . . . ..... . . . . . .... ... ...... ....... . .. .................. .... . . . .................. .. . .... .............. ... . . .. . ....................................... ... ................ .. ............................ . . ... . . . .... ............. ... . ......... . . . .. .... . .. . . . . .. ... . .. .. . . . . .... . . . . . . . . .. . . . . . . . .
lowQualScore : 4 00 1 5 9 1 2222 999 22 1 9 0 7 0 1 9 1 1 88888 2 3 1 3 0 0000 333 666666 2222222 0 55 222222222222222222 1111 6 6 0 000000000000000000 11 4 4444 88888888888888 111 2 0 44 0 000000000000000000000000000000000000000 333 2222222222222222 77 0000000000000000000000000000 2 7 888 7 5 3 2222 8888888888888 555 9 888888888 0 8 0 88 0000 0 00 2 6 6 8 00 666 8 88 00 8 0 4 0 0000 0 7 7 5 2 7 5 5 88 7 2 8 8 2 0 0 2
consensus : GTTGTT--TTTGA-TATATGTCAATGACGTTGC---TGA--AAA--TATG-TTATCT-TTNTGT-AGATTATNTGCAGATGAC-AA-TTC-AT-----TACA-ATA-TNC--A-TCAAATAATATAGC-AAA---C---A-TT--GAANA---------------CAT--T-TTAAA-TCA-CGA-T--TTA-AGT-ATA---TT--AGACAGA----TGGT--CATCC--A----A-A-TGGCTAC-TGNAATTTAA-TCC-CNC-TAA-A---C-T-AA---G---C-----A----T-ATTTTTT-C-ACA-C-TAAA---NT----CAAATTATGT-----TCTATC----G--CTT-AA-TTTCAACAATG-TCCATTAG-AATTCGT-GACACA-TCACAAACATTTAG-G-A-TTANTTTC-T-TTCATGATCTTAGTTGGTCC--------GAATACATTAAC-AGGTACA----A-CA--AAAAAGGCTTATCAAAG--ATTAGGTCTTCTGA-AAAAATTAAA-ATACATCATTNGTAGAAAAA-CT----CTA-TCA-AAAATGTA-TACGACATTTGTAAGACC-ATTGCTT--GAA-TACGCTTCAGTTGTTTGGGATGGGTGTCCAATACAATATATNGT-AATCAACTAA
Reference ( family-92 ) : GTTGTT--TTTGA-TATATGTCAATGACGTTGC---TGA--AAA--TATG-TTATCT-TTNTGT-AGATTATNTGCAGATGAC-AA-TTC-AT-----TACA-ATA-TNC--A-TCAAATAATATAGC-AAA---C---A-TT--GAANA---------------CAT--T-TTAAA-TCA-CGA-T--TTA-AGT-ATA---TT--AGACAGA----TGGT--CATCC--A----A-A-TGGCTAC-TGNAATTTAA-TCC-CNC-TAA-A---C-T-AA---G---C-----A----T-ATTTTTT-C-ACA-C-TAAA---NT----CAAATTATGT-----TCTATC----G--CTT-AA-TTTCAACAATG-TCCATTAG-AATTCGT-GACACA-TCACAAACATTTAG-G-A-TTANTTTC-T-TTCATGATCTTAGTTGGTCC--------GAATACATTAAC-AGGTACA----A-CA--AAAAAGGCTTATCAAAG--ATTAGGTCTTCTGA-AAAAATTAAA-ATACATCATTNGTAGAAAAA-CT----CTA-TCA-AAAATGTA-TACGACATTTGTAAGACC-ATTGCTT--GAA-TACGCTTCAGTTGTTTGGGATGGGTGTCCAATACAATATATNGT-AATCAACTAA
gi|1 : GCTATT--TTTAA-TATATGTCAATGATATTGC---AGA--AAA--AATG-TTATCT-TTCTGCAAGATTATTTGCAGATGAC-AA-TTC-TT-----TACA-GCA-CAC--C-TGTAATAATTTA-C-AAG---C---G-CTA-GAAAA---------------CAA--T-TTAAA-TCA-TGA-T--TTACAAC-A-G---TT--AGA-AAT----TTGT--C--CCAAA----A-A-TGGTTAC-TGCAATTTAA-TCCACAA-AAA-A---CAA-AA---G---CA----A----T-ATCTTTTACAACA-C--AAA---ATAATACAAA-CA-GTCCGAATCTATC------------A-TTTCAACAAAGTTCCA-TAG-AATTCGT-TACGCA-TCATAAACACTTAG-G-AGTTACTTTC-T-CTCAAGATCTAAGTTGGTCC--------T-ATATAT--AT-AGATACA----A-TACTAGCAAAGC-TA--AAAGAAAATGGGT-TAATGA-AAAAGTTAAA-GTTTAAAATTAGCCGAAAAT-CG----TTA-TCA-TTAATGTA-TACTACATCTGTTAGACCTATT--TTA-GAA-TATGCATCAG
gi|11 : ggttaaagttaccttgaagacagaacacaaaaagtattatacagagaagctctttcaagcacaaaaccactatttgctggtgtccctcaagggtctgtactaggacctttTTGTTATTTTGA-TATATGTCAATAATGTTGC---AGG--TAA--GATG-TTATTT-TTACATCACACTAAGT-C---TTAC-AA-TAA-AT-----TACA-A----CC--A--CAG-----AGAGC-AAATTTC---AGTT--GGA-A---------------CAT------------A-CAA-TAATGA-AAT-AT--------------A----TGGT--C--CC--AAT--A-A-TCATCAC-TGCAATTGAA-GCC-C-C-AAA-AGGCC-G-AA---AATCC-----A----T-ATTTTT
gi|12 : tttcaaacataagacctttctaagctggtgtccctctatggttggtaataggaccaTTGTT--TTTGA-TATACGTTAATGACA-TACA--TGA--AAA--TTTG-TTATCTGTTTTGT-GAACTATATGCAGATGAT-AA-TAC-ATGTACCTACA-ACA-
gi|13 : gaaaatcttttagaatggtttaaaagctattcaagtaacagatcacagaaagtaatgtacagcaactaatttcttctataaaacacacttatgcaggtgtaccccaccccaaggctctgtacatggtccaactTTGTT--TTTGA-TATACGTTAATGACA-TACA--TGA--AAA--TATG-TTATCT-GTTTGT-GAACTATATGCAGATGAT-AA-TAC-ATG----TACaagttcaca
gi|14 : gaaaatcttttagaatggtttaaaagctattcaagtaacagatcacagaaagtaatgtacagcaactaattttcttctataaaacacacttatgcaggtgtaccccaccccaaggctctgtacatggtccaactTATT--TTTAAATTTATTTAAATGATGTTTC---GGA--CAA--AATG-TTGTCA-ATGTGC-AGATTTTTAGCAGATGAA-AATTTT-AT-----T-CA-ATA-TTT--A-TCAGATAGTGGTGC-TGA---A---A-TT--GACCG---------------TAT--T-ATCAA-TCA-AGA-T--T----GT-CTATTTTT--AGATAGC----TGGT--CAc
gi|16 : ctgttaatgctggtgcttcccagagttctgtacatgT--TTTTA-TATATGTCAATGATGTTGC---TCA--TAA--TACG-TTATCT-TTTTGT-CGGTTATATGTTGATTTC-AA-TT-----------CA-ATA-TGCGGA-T--AAGAATTTAAA-CAA---C---A-TA--GAATG---------------TGT--A-CTTAA-TCA-TGA-T--CTT-AGaaaca
gi|17 : A---------------TAT--T-TTGAT-CCA-CAA-T--TTA-GAT-GTA---TT--AGACAGA----TTGTCACATTC--A----AGA-TTACTGC-TGGAATACAA-CCT-TCC-TAAGA---C-TAAA---G---C-----A----
gi|18 : A-AAAATGTA-TATTACGTTTGTAAGACC-AATTTTA--GAA-TATGCTTC---TG--TGGTATGGGT----AACAAAAT-TTTCGTCAATCA
gi|2 : GTTCTT--TTGAA-TCTATGGAAACGACGTAGC---TGA--AAAATTATGATCATCA-TTATGT-A-ATTGTTTGCAGATGACCAA-TTC-AT-----TACACATGCTAC--A-TCATATAATATAGCCAAA---T---A-TT--GAATAACATTAAATCAAAATCAT--T-TTAAAATCA-CGAAT--TTA-AGTCATA---TTCAAGACAGA----TGGT--CATCC--A----A---TG-CTACCTTAAATTTAACTCT-CTC-TAA-AA--C-T-AACACG---C-----A----TTATTTTTT-C-ACAAC-TAAG---GT----CAAATTAT-T-----TC-ACC----AAACTTCAA-TTTCA-CAATG-TATATTACTAATTCCTAGACATACTAACAAACATT--A-G-A-TTATTTTTAC-TTCAT-ATCT-AGTTG-TCT--------GAATACATTAAC-AG-TATA----A-CA--AAAAAGGCTTATCAA-G--ATTAT-TCTTC-GACAAAAATTAAA--TACATCATTGGTAGAAAAA-TTCATCCTATTCACAAAATGTATTACGACA-TTATTAGA-C-ATTGCTT--GAATTACGCTTCAGTTGTT--GGAT-GGTGTCCAATACAATATATTGG-AA-AAACTAgtcaattta
gi|21 : TGA-TTTATA--AATGATTTTGC---AGATGAAA--TG-G-TCAG-T-TTTTGC-AGATTGTACGCAGATGAT-A
gi|22 : cATGATCTTAGTTGGTCT--------GAATACAT
gi|3 : GTTATT--TTTGA-TCTATGTGAACGACGTAGC---TGA--AAA--TATG-ATATCA-TTATGT-AGATTGTTTGCAGATGAC-AA-TTC-AT-----TACA-ATG-TAC--A-TCATATAATATAGC-AAA---T---A-TT--GAATA---------------CAT--T-TTGAA-TCA-CGA-T--TTA-AGT-ATA---TT--AGACAGA----TGGT--CATCC--A----A-A-TGGCTAC-TTAAATTTAA-TCC-CTC-TAA-A---C-T-AA---G---C-----A----T-ATTTTTT-C-ACA-C-TAAG---GT----CAAATTATGT-----TCTACC----A--CTTCAA-TTTCAGCAATG-TCCATTAG-AATTCTT-GACATC-TCACAAGCATTTAG-G-A-TTAGTTTT-TAGTCATGATCTTAGTTGGTCT--------GAA---ATTAAC-AGG-ACA----A-CA--AAAAAGGCTTATCAAAG--ATTAGGTCTTCTGA-AAAAATTAAA-ATACATCATTTGTAGAAATA-CT----CTA-TCA-AAAATGTA-TACGACATTTATAAGACC-ATTGCTT--GAA-TACGCTTCAGTTGTTTGGGATGGGTGTCCAATACAATATATGGTAAATCAACTAAnnnnnnnnnnnnnnnnnnnnnnnnnat
gi|4 : TATT--ATTAA-TCTATGTCAATGATGTTGC---TGA--AAA--TATC-ACGTAT-TCCTGT-AGATTATATGCTGGTGAT-AA-CTC-AA-----TTCA-ATG-TGC--ACTTAGCTAAAACTTT-AAA---CGAAA-TT--GA-------------------AT--T-T---A-TCA-TGA-C--CTC-AGC-GTC---CT--AGATGAA----TGGT--CA--A--A----A-A-TAGTTGT-TAAAGTTTAA-TCC-CTCTTAA-A---C-TAAA---G---CTGTAAG----T-AGTTTT-----CA-T-TGAACCTCT----CAAGTTATTT-----T-------------------TTTGAACATTG-TC----GG-AGTATGT-GACAGT-GCTCAGACACCTAGAG-G--------C-T-TT--TG-----AGCTGGTCCCGGCAAATAAATAAATTGAC-AAGTACAGCTTA-CA--AAAAG-------CAAGA--ATT---TCTTTTT--AAAAATCAAATTTACTTTA--GGGAAAAAAACCT----CTT-TTT-AAAA--------------TGTAAGTCC-A--GCTTTAGAA-TATACCTCCGTTGTTTGAGATGGATGT
gi|5 : GTTGTT--TTTGA-TATATGTCAATGTTGTTGC---TCA--TAA--TATG-TTATCT-TTCTGT-CGGCTATATGCTGATGAC-AA-CTC-AT-----T-CA-ACA-TGC--ac
gi|6 : atactattttaatacttgccggccttctgccaggtccctacagtctaccaacttgattgaaactgatatcaatagccattgataaaatgatgatgaaatgtatgtgttatggttttaatgcgtctgtcaaaggcatttgacaaatcctggaagagtgcgtctttattacaacgtaatggaattggtggaattcttttccaatggtttaaaagctacttgtataatagaacaattaggttatggtatataatttttgcatagtaaacggtttgaaatgaatgctggagtgccacaaggttccgtccttggttcatt-TTTTGT-AGATTATTTTCAGATGAC-CA-TTC-TT-----TACA-ACA-CAC--T-TGCAATAAT-TCAC-AAA-------A-TCAAGAAAA---------------AATAAT-TTAGA-TTAATGA-C-------GT-ACA---TC--AGTTAGAAATTTGGTT-CA--C--A----A-ACTGGATAC-TGCAACCTGA-TCC---------A---C---AA--------------------ATTTTTTAC-ACA-CATCAA---TA----CAAAC-ACGC-----TGAAT-----G--TAT-TA-TTTCAGCAAAG-TTCCCTAG-AA-------ACACA-TCGTAAACAT------------ATTTC-T-CTCAggataagaatttgaacaacatagaatg
gi|7 : caaaattacaacgcaagtagaacattctaaaaaacaagtacgttatatgaagattgctctttcaaacattaaaccatatatgctggtgtccgtcttaggccattgttattgtcttaatacgtgtacgatgccagtgatattgcagATCTTAGTTGGTCT--------GAATACATTAACGACGGACA----AACA--AAAAAGGCTTATCAAAG--ATT-GGTCTTCTGA-AAAAATTAAA-ATACATCATTTGTAGAAATA-CT----CTA-TCA-AAAATGTA-TACGACATTTATAAGACC-ATTGCTT--GAA-TACGCTTCAGTTGTTTGGGATGGGTGTCCAATACAATATATGGT-AATCAACTAAag
gi|8 : GTTTTT--TTTC--TATATGTAAATGATGTTTC---GGA--CAA--AATG-TTGTCT-ATGTGC-AGGCTTTTTGTGGATGAT-AA-TTCTAT-----T-CA-ATA-TTT--T-TCAAATAATATTGC-TTA---G---A-TA--GAAAA---------------TAT--TGTTAAA-T-A-CGATT--TTT-TTT-ATT---TT--AGAAAGA----TGGT--TGCTT--AAAACA-A-TGGCTAC-TTCATTTTAA-CCC-CAG-CAA-T---T-T-AA---G---C-----AAAGTT-GCTTTTT-T-Attttcctctgtttcaaagttatatcggagattctgtgtagatttactgtatgactacctcacaccatattatataatcaaattaccatcacatgtgtatttacttcttttttcttctaatgtaactacaaattatcatgtctacttattgtaattagtatatattgacagttgt
gi|9 : atgtatctagatgaaggaaaatcacgttgtattttccaaggcctctgtacttgggcctttac-TATATTT--ATGATGTTGCAAATGA--AA---TG-G-TCA-CT-TTTTGC-AGATTGTATGCAAATGAT-AA-CTC-AT-----TACA-ATA-TTC--C-TCTAATAATTTAAA-AAG---C---A-TT--GAA-A---------------CATG-T-TTAAA-
gi|9 : tcttattTTTTT-T-ACA-A--AAA---AT----AAAAATATAG-----TTTATCTTAGG--CTT-AACTTTCAACAATG-TCAATTAC-AATTCGTAGAT-CA-ACACAAAAATGTAG-GCA-TTATTTTCTT-TTCCGGATCTAAGCTGGTCaaaaacactccaaatgctcaattttttacaaaaaataaaaatatagtttatcttaggcttaactttcaacaatgtcaattacaattcgtagatcaacacaaaaatgtaggcattattttcttttccggatctaagctggtcgcattatacaaat
blockSeqs : G AT A C T AAAT TGA AT A G A C G A C T T GTACC A C C C GGA CAG ATAGCC TTTC G AA TAACATTAAATCAAAATC AAT C A A ATTTAAGTCATA CA T AATT TGCTTAAAAC GA C GC C CTCTTAAACTAAAGCTGTAAGT AC TTGAACCTCT TT TAGTTTATCTTAGGCTTAAC G . TAT T C A ATAC GTAGGCATTAT AC T CCGGCAAAT C G GT GCTT A . G T T A . AGG AC TT G A C CATC T C T T T . A T TA T A A T A T
blockSeqs : G . . T C AT T . . . T . A A . . . G A . . T AC CAG AGAGC CGAA . . CGT TG T . . TAATGAAATAT . C . CACATTCA AC . GG . CCAAAAGGCCGAAAATCCAT C ACTAAGGT TT TTTCACCAAACTTCAA A . CAT . T A ATC TTAGGATTAG TA T T C . GG . . . G T T G . AT A A T T . . . . . G T . T G . . A A G . T
blockSeqs : G . . T C AT A . . . T . A A . . . . A . . G A CAT GGTGC A . . TGT GT G . . TTTTTTTTATT . C . CCCAAT A . TA . CTCTAAAACTAACACGCATT C CATCAATA TT TGTTCTACCACTTCAA G . CCC . G . AGT TAGATTAT TT T T A . T . . . G T T A . GG A A G A . . . . . G T . T G . . C A G . .
blockSeqs : A . . A T A A . . . G . T T . . . . A . . A A CAT TTAAA C . . TAC T A . . TTGTCTATTT . C . CATCCA A . TA . CAGCAATTTAAGCAAAGTT T CTAAGGT AT CGCTGAATGTATTA A . AAT . G . ACA CTAGAGG T A T C . G . . . . . . . . . . . T T . . . . . G . . T G . . A
blockSeqs : C . . C T G C . . . T . A A . . . . A . . A A TAG ATAGC T . . AAA A G . . TTTAGATGTA . T . CATCCA A . AA . CTCTAAACTAAGCAT T AAAAAT C TTTT . . . . . . CA A T . T . . . . . . . G . . .
blockSeqs : A . . A C T T . . . A . T A . . . . T . . G A GCA ACTTT T . . AAT T A . . TTTAAGTATA . T . TCACA A . GC . ACAA . .
blockSeqs : A . . G T T A . . . T . A A . . . . A . . G T CAA ATTGC G . . AC T A . . CCTCAGCGTC . A . CAAA . . TC .
blockSeqs : G . . C C A A . . . A . T T . . . . A . . A T CTA TTAAA C . . AC T A . . CGTACA . . .
blockSeqs : T . . C T T A . . . C . A T . . . . . . . T C A TCAC . . . . T . . .
blockSeqs : . . A T T T . . . C . A A . . . . . . . T . . .
blockSeqs : . . T T C . . . T . T G . . . . . . .
blockSeqs : . . T G A . . . G . T A . . . . .
blockSeqs : . T . A . .
blockSeqCons : ATNGC* ** CTCTAAACTAAGCAT************************ C** CTAAANT********* TT TGTTCGCCGGGCTTAA************ CAT NTAGGATTAN*** TN* ** ** G** **
originalCons : GTTGTT--TTTGA-TATATGTCAATGACGTTGC---TGA--AAA--TATG-TTATCT-TTNTGT-AGATTATNTGCAGATGAC-AA-TTC-AT-----TACA-ATA-TNC--A-TCAAATAATATAGC-AAA---C---A-TT--GAANA---------------CAT--T-TTAAA-TCA-CGA-T--TTA-AGT-ATA---TT--AGACAGA----TGGT--CATCC--A----A-A-TGGCTAC-TGNAATTTAA-TCC-CNC-TAA-A---C-T-AA---G---C-----A----T-ATTTTTT-C-ACA-C-TAAA---NT----CAAATTATGT-----TCTATC----G--CTT-AA-TTTCAACAATG-TCCATTAG-AATTCGT-GACACA-TCACAAACATTTAG-G-A-TTANTTTC-T-TTCATGATCTTAGTTGGTCC--------GAATACATTAAC-AGGTACA----A-CA--AAAAAGGCTTATCAAAG--ATTAGGTCTTCTGA-AAAAATTAAA-ATACATCATTNGTAGAAAAA-CT----CTA-TCA-AAAATGTA-TACGACATTTGTAAGACC-ATTGCTT--GAA-TACGCTTCAGTTGTTTGGGATGGGTGTCCAATACAATATATNGT-AATCAACTAA
finalCons : GTTGTT--TTTGA-TATATGTCAATGACGTTGC---TGA--AAA--TATG-TTATCT-TTNTGT-AGATTATNTGCAGATGAC-AA-TTC-AT-----TACA-ATA-TNC--A-TCAAATAATATNGC-AAA---C---A-TT--GAANA---------------CAT--T-TTAAA-TCA-CGA-T--TTA-AGT-ATA---TT--AGACAGA----TGGT--CATCC--A----A-A-TGGCTAC-TGNAATTTAA-TCCCTCTAAACTAAGCAT------------------------ATTTTTTC--ACACTAAANT---------CAAATTATGTTCGCCGGGCTTAA------------TTTCAACAATG-TCCATTAG-AATTCGT-GACACA-TCACAAACATNTAGGATTAN---TTTCTN-TTCATGATCTTAGTTGGTCC--------GAATACATTAAC-AGGTACA----A-CA--AAAAAGGCTTATCAAAG--ATTG--TCTTCTGA-AAAAATTAAA-ATACATCATTNGTAGAAAAA-CT----CTA-TCA-AAAATGTA-TACGACATTTGTAAGACC-ATTGCTT--GAA-TACGCTTCAGTTGTTTGGGATGGGTGTCCAATACAATATATNGT-AATCAACTAA
5 sequences could not be aligned to this reference sequence:
Unaligned ( gi|10 ): TTACTCAGATACCTATATCGATTGTCATTTTGTTATGGGGAGATGAACAAACATGACATGTAAATCAACTAATTTTCCTTGTTCAAAAGTATATCAGAGATTCTGGTAGATTTACTGTATGACTACCCTCACATCATATTATATTAATCAAATACCATCACATGTGTATTACTTATTTTCTTTCTAATGTAACTACAAATTATCATGTCTTACTTATTGTAATTAGTATATATTGACAGTTG
Unaligned ( gi|15 ): AGGATATCTATTGGAGTGGTTTAAAAGCTATTCAAGTAACAGATCACAGAAAGTAATGTACAGAAACTTATTTTCTTCTATAAAACATACTAATGCAGGCCATGTACTTCGTCCACTTTTATTTTTGAT
Unaligned ( gi|19 ): TAACAGATCACAAAATGCAATGCACAGAAACTTGGTTTTTTTTTTCTGTAAAGCACAGGCAATGTAAATGTACCCAAAGGTTCT
Unaligned ( gi|20 ): GTATGCCTCAAGGGTCTGTACCAAGACCTTTCTTATTTTTGTTATACACGTACATAAATGATGAT
Unaligned ( gi|23 ): ATCATTGTAGTAACATTTATTAAGAAATCTTTAC
Alignments
lowQualScore : 1111 11111 1111111 11111111111111111 222222222222222222 1111 111111111111111111 22222222222222222 44444444444444444444444444444444444444 1 2222222222222222 888888888888888888888888 1 11111 2222 222222222 1111111 222222 11 1111 11 2
lowQualScore : 1 55 3 0 5 1 2222 444 44 3 2 1 2 2 1 1 2 3 3 00000 6 3 0 3 1 6666666 66666666666666666 3 88 999999999999999999 0000 2 3 4 777777777777777777 66 6 9999 55555555555555555 0 5 22 5 44444444444444444444444444444444444444 1 5 4444444444444444 77 333333333333333333333333 4 6 999 6 2 3 7777 7 44444 1 1111 8 444444444 1 0 8 88 4444444 11 1 0 111111 0 88 77 0 1 1 8 7777 8 6 6 2 3 6 3 2 55 6 3 0 0 3 1 0 3
lowQualScore : . .. . . . . .... ... .. . . . . . . . . . . ..... . . . . . ....... ................. . .. .................. .... . . . .................. .. . .... ................. . . .. . ...................................... . . ................ .. ........................ . . ... . . . .... . ..... . .... . ......... . . . .. ....... .. . . ...... . .. .. . . . . .... . . . . . . . . .. . . . . . . . .
lowQualScore : 4 00 1 5 9 1 2222 999 22 1 9 0 9 9 0 1 9 1 1 88888 2 3 1 3 0 5555555 44444444444444444 6 66 222222222222222222 1111 6 6 0 000000000000000000 11 4 4444 99999999999999999 2 0 44 0 99999999999999999999999999999999999999 4 7 2222222222222222 77 222222222222222222222222 2 7 888 7 5 3 2222 5 00000 0 6666 9 888888888 0 8 0 88 2222222 88 0 8 000000 8 88 00 8 0 4 0 0000 0 7 7 5 2 7 5 5 88 7 2 8 8 2 0 0 2
consensus : GTTGTT--TTTGA-TATATGTCAATGACGTTGC---TGA--AAA--TATG-TTATCT-TTNTGT-A-GATTATNTGCAGATGAC-AA-TTC-AT-----TACA-ATA-TNC--A-TCAAATAATATNGC-A-AA---C---A-TT--GAANA---------------CAT--T-TTAAA-TCA-CGA-T--TTA-AGT-ATA---TT--AGACAGA----TGGT--CATCCA----A-A--TGGCTAC-TGNAATTTAA-TCC-CNC-TAA-A---CT-AA---G---C-----A----T-ATTTTTT-CA-CA-C-TAAA---NT----CAAATTAT-GTTC-ACC--GAACTT-A--A-TTTCAACAATG-TCCATTAG-AATTCGT-GACACA-TCACAAACATNTAGG-A-TTACTTTCTCTTCATGATCTTAGTTGGTCC--------GAATACATTAAC-AGGTACAA-C--A--AAAAAGGCTTATCAAAGATT--G-T-CTTCTGA-AAAAATTAAA-ATACATCATTNGTAGAAAAA-CT----CTA-TCA-AAAATGTA-TACGACATTTGTAAGACC-ATTGCTT--GAA-TACGCTTCAGTTGTTTGGGATGGGTGTCCAATACAATATATNGT-AATCAACTAA
Reference ( family-92 ) : GTTGTT--TTTGA-TATATGTCAATGACGTTGC---TGA--AAA--TATG-TTATCT-TTNTGT-A-GATTATNTGCAGATGAC-AA-TTC-AT-----TACA-ATA-TNC--A-TCAAATAATATNGC-A-AA---C---A-TT--GAANA---------------CAT--T-TTAAA-TCA-CGA-T--TTA-AGT-ATA---TT--AGACAGA----TGGT--CATCCA----A-A--TGGCTAC-TGNAATTTAA-TCC-CTC-TAA-A---CT-AA---G---C-----A----T-ATTTTTT-CA-CA-C-TAAA---NT----CAAATTAT-GTTC-GCC--GGGCTT-A--A-TTTCAACAATG-TCCATTAG-AATTCGT-GACACA-TCACAAACATNTAGG-A-TTANTTTCTNTTCATGATCTTAGTTGGTCC--------GAATACATTAAC-AGGTACAA-C--A--AAAAAGGCTTATCAAAGATT--G-T-CTTCTGA-AAAAATTAAA-ATACATCATTNGTAGAAAAA-CT----CTA-TCA-AAAATGTA-TACGACATTTGTAAGACC-ATTGCTT--GAA-TACGCTTCAGTTGTTTGGGATGGGTGTCCAATACAATATATNGT-AATCAACTAA
gi|1 : GCTATT--TTTAA-TATATGTCAATGATATTGC---AGA--AAA--AATG-TTATCT-TTCTGC-AAGATTATTTGCAGATGAC-AA-TTC-TT-----TACA-GCA-CAC--C-TGTAATAAT-TTAC-A-AG---C---G-CTA-GAAAA---------------CAA--T-TTAAA-TCA-TGA-T--TTACAAC-A-G---TT--AGA-AAT----TTGT--C--CCA----A-AAATGGTTAC-TGCAATTTAA-TCCACAA-AAA-A---CA-AAA--G---C-----AA---T-ATCTTTTACAACA-C--AAA---ATAATACAAAC-A--GT----CC--GAATCT-ATCA-TTTCAACAAAGTTCCA-TAG-AATTCGT-TACGCA-TCATAAACACTTAGG-AGTTACTTTCTC-TCAAGATCTAAGTTGGTCC--------T-ATATAT--AT-AGATACAA-T--ACTAGCAAAGCTAAAAGAAAATG--G-G-TTAATGA-AAAAGTTAAA-GTTTAAAATTAGCCGAAAAT-CG----TTA-TCA-TTAATGTA-TACTACATCTGTTAGACCTATT--TTA-GAA-TATGCATCAG
gi|11 : ggttaaagttaccttgaagacagaacacaaaaagtattatacagagaagctctttcaagcacaaaaccactatttgctggtgtccctcaagggtctgtactaggacctttTTGTTATTTTGA-TATATGTCAATAATGTTGC---AGG--TAA--GATG-TTATTT-TTACATCA-CACTAAGT-C---TTAC-AA-TAA-AT-----TACA-A----CC--A--CAGAGA-----GC-A-AATTTC---AGTT--GGA-A---------------CAT------------A-CAA-TAATGA-AAT-AT--------------A----TGGT--C--CCAAT--A-A--TCATCAC-TGCAATTGAA-GCC-C-C-AAA-AGGCCG-AA---AATCC-----A----T-ATTTTT
gi|12 : tttcaaacataagacctttctaagctggtgtccctctatggttggtaataggaccaTTGTT--TTTGA-TATACGTTAATGACA-TACA--TGA--AAA--TTTG-TTATCTGTTTTGT-G-AACTATATGCAGATGAT-AA-TAC-ATGTACCTACA-ACA-
gi|13 : gaaaatcttttagaatggtttaaaagctattcaagtaacagatcacagaaagtaatgtacagcaactaatttcttctataaaacacacttatgcaggtgtaccccaccccaaggctctgtacatggtccaactTTGTT--TTTGA-TATACGTTAATGACA-TACA--TGA--AAA--TATG-TTATCT-GTTTGT-G-AACTATATGCAGATGAT-AA-TAC-ATG----TACaagttcaca
gi|14 : gaaaatcttttagaatggtttaaaagctattcaagtaacagatcacagaaagtaatgtacagcaactaattttcttctataaaacacacttatgcaggtgtaccccaccccaaggctctgtacatggtccaactTATT--TTTAAATTTATTTAAATGATGTTTC---GGA--CAA--AATG-TTGTCA-ATGTGC-A-GATTTTTAGCAGATGAA-AATTTT-AT-----T-CA-ATA-TTT--A-TCAGATAGTGGTGC-T-GA---A---A-TT--GACCG---------------TAT--T-ATCAA-TCA-AGA-T--T----GT-CTATTTTT--AGATAGC----TGGT--CAc
gi|16 : ctgttaatgctggtgcttcccagagttctgtacatgT--TTTTA-TATATGTCAATGATGTTGC---TCA--TAA--TACG-TTATCT-TTTTGT-C-GGTTATATGTTGATTTC-AA-TT-----------CA-ATA-TGCGGA-T--AAGAATTTAAA-C-AA---C---A-TA--GAATG---------------TGT--A-CTTAA-TCA-TGA-T--CTT-AGaaaca
gi|17 : A---------------TAT--T-TTGAT-CCA-CAA-T--TTA-GAT-GTA---TT--AGACAGA----TTGTCACATTCA----AGA--TTACTGC-TGGAATACAA-CCT-TCC-TAAGA---CTAAA---G---C-----A----
gi|18 : A-AAAATGTA-TATTACGTTTGTAAGACC-AATTTTA--GAA-TATGCTTC---TG--TGGTATGGGT----AACAAAAT-TTTCGTCAATCA
gi|2 : GTTCTT--TTGAA-TCTATGGAAACGACGTAGC---TGA--AAAATTATGATCATCA-TTATGT-A--ATTGTTTGCAGATGACCAA-TTC-AT-----TACACATGCTAC--A-TCATATAATATAGCCA-AA---T---A-TT--GAATAACATTAAATCAAAATCAT--T-TTAAAATCA-CGAAT--TTA-AGTCATA---TTCAAGACAGA----TGGT--CATCCA----A----TG-CTACCTTAAATTTAACTCT-CTC-TAA-AA--CT-AACACG---C-----A----TTATTTTTT-CA-CAAC-TAAG---GT----CAAATTAT--TTC-ACC--AAACTTCA--A-TTTCA-CAATG-TATATTACTAATTCCTAGACATACTAACAAACAT-TAG--A-TTATTTTTACTTCAT-ATCT-AGTTG-TCT--------GAATACATTAAC-AG-TATAA-C--A--AAAAAGGCTTATCAA-GATT--A-TTCTTC-GACAAAAATTAAA--TACATCATTGGTAGAAAAA-TTCATCCTATTCACAAAATGTATTACGACA-TTATTAGA-C-ATTGCTT--GAATTACGCTTCAGTTGTT--GGAT-GGTGTCCAATACAATATATTGG-AA-AAACTAgtcaattta
gi|21 : TGA-TTTATA--AATGATTTTGC---AGATGAAA--TG-G-TCAG-T-TTTTGC-A-GATTGTACGCAGATGAT-A
gi|22 : cATGATCTTAGTTGGTCT--------GAATACAT
gi|3 : GTTATT--TTTGA-TCTATGTGAACGACGTAGC---TGA--AAA--TATG-ATATCA-TTATGT-A-GATTGTTTGCAGATGAC-AA-TTC-AT-----TACA-ATG-TAC--A-TCATATAATATAGC-A-AA---T---A-TT--GAATA---------------CAT--T-TTGAA-TCA-CGA-T--TTA-AGT-ATA---TT--AGACAGA----TGGT--CATCCA----A-A--TGGCTAC-TTAAATTTAA-TCC-CTC-TAA-A---CT-AA---G---C-----A----T-ATTTTTT-CA-CA-C-TAAG---GT----CAAATTAT-GTTCTACC----ACTTCA--A-TTTCAGCAATG-TCCATTAG-AATTCTT-GACATC-TCACAAGCATTTAGG-A-TTAGTTTTTAGTCATGATCTTAGTTGGTCT--------GAA---ATTAAC-AGG-ACAA-C--A--AAAAAGGCTTATCAAAGATTAGG-T-CTTCTGA-AAAAATTAAA-ATACATCATTTGTAGAAATA-CT----CTA-TCA-AAAATGTA-TACGACATTTATAAGACC-ATTGCTT--GAA-TACGCTTCAGTTGTTTGGGATGGGTGTCCAATACAATATATGGTAAATCAACTAAnnnnnnnnnnnnnnnnnnnnnnnnnat
gi|4 : TATT--ATTAA-TCTATGTCAATGATGTTGC---TGA--AAA--TATC-ACGTAT-TCCTGT-A-GATTATATGCTGGTGAT-AA-CTC-AA-----TTCA-ATG-TGC--ACTTAGCTAAAACTTT-A-AA---CGAAA-TT--GA-------------------AT--T-T---A-TCA-TGA-C--CTC-AGC-GTC---CT--AGATGAA----TGGT--CA--AA----A-A--TAGTTGT-TAAAGTTTAA-TCC-CTCTTAA-A---CTAAA---G---CTGTAAG----T-AGTTTT-----CA-T-TGAACCTCT----CAAGTTAT-TTT-------------------TTTGAACATTG-TC----GG-AGTATGT-GACAGT-GCTCAGACACCTAGA-G---GCTTT-------TG-----AGCTGGTCCCGGCAAATAAATAAATTGAC-AAGTACAG-CTTA--CAAAAAGC------AAGAAT--T-T-CTTTTT--AAAAATCAAATTTACTTTA--GGGAAAAAAACCT----CTT-TTT-AAAA--------------TGTAAGTCC-A--GCTTTAGAA-TATACCTCCGTTGTTTGAGATGGATGT
gi|5 : GTTGTT--TTTGA-TATATGTCAATGTTGTTGC---TCA--TAA--TATG-TTATCT-TTCTGT-C-GGCTATATGCTGATGAC-AA-CTC-AT-----T-CA-ACA-TGCGGA-T--AAGAAT-TTGA-ACAA---C---A-TA--GAAac
gi|6 : atactattttaatacttgccggccttctgccaggtccctacagtctaccaacttgattgaaactgatatcaatagccattgataaaatgatgatgaaatgtatgtgttatggttttaatgcgtctgtcaaaggcatttgacaaatcctggaagagtgcgtctttattacaacgtaatggaattggtggaattcttttccaatggtttaaaagctacttgtataatagaacaattaggttatggtatataatttttgcatagtaaacggtttgaaatgaatgctggagtgccacaaggttccgtccttggttcatt-TTTTGT-A-GATTATTTTCAGATGAC-CA-TTC-TT-----TACA-ACA-CAC--T-TGCAATAAT-TCAC-A-AA-------A-TCAAGAAAA---------------AATAAT-TTAGA-TTAATGA-C-------GT-ACA---TC--AGTTAGAAATTTGGTT-CA--CA----A-AC-TGGATAC-TGCAACCTGA-TCC---------A---C--AA--------------------ATTTTTTACA-CA-CATCAA---TA----CAAAC-A-----C-GCT--GAATGT-ATTA-TTTCAGCAAAG-TTCCCTAG-AA-------ACACA-TCGTAAACATATtg
gi|7 : caaaattacaacgcaagtagaacattctaaaaaacaagtacgttatatgaagattgctctttcaaacattaaaccatatatgctggtgtccgtcttaggccattgttattgtcttaatacgtgtacgatgccagtgatattgcagATCTTAGTTGGTCT--------GAATACATTAACGACGGACAAAC--A--AAAAAGGCTTATCAAAGATT--GGT-CTTCTGA-AAAAATTAAA-ATACATCATTTGTAGAAATA-CT----CTA-TCA-AAAATGTA-TACGACATTTATAAGACC-ATTGCTT--GAA-TACGCTTCAGTTGTTTGGGATGGGTGTCCAATACAATATATGGT-AATCAACTAAttctctcaag
gi|8 : GTTTTT--TTTC--TATATGTAAATGATGTTTC---GGA--CAA--AATG-TTGTCT-ATGTGC-A-GGCTTTTTGTGGATGAT-AA-TTCTAT-----T-CA-ATA-TTT--T-TCAAATAATATTGC-T-TA---G---A-TA--GAAAA---------------TAT--TGTTAAA-T-A-CGATT--TTT-TTT-ATT---TT--AGAAAGA----TGGT--TGCTTAAAACA-A--TGGCTAC-TTCATTTTAA-CCC-CAG-CAA-T---TT-AA---G---C-----AAAGTT-GCTTTTT-TA-ttttcctctgtttcaaagttatatcggagattctgtgtagatttactgtatgactacctcacaccatattatataatcaaattaccatcacatgtgtatttacttcttttttcttctaatgtaactacaaattatcatgtctacttattgtaattagtatatattgacagttgt
gi|9 : atgtatctagatgaaggaaaatcacgttgtattttccaaggcctctgtacttgggcctttac-TATATTT--ATGATGTTGCAAATGA--AA---TG-G-TCA-CT-TTTTGC-A-GATTGTATGCAAATGAT-AA-CTC-AT-----TACA-ATA-TTC--C-TCTAATAATTTAAA-A-AG---C---A-TT--GAA-A---------------CATG-T-TTAAA-
gi|9 : tcttattTTTTT-TA-CA-A--AAA---AT----AAAAATATAGTTT-ATCTTAGGCTT-A--ACTTTCAACAATG-TCAATTAC-AATTCGTAGAT-CA-ACACAAAAATGTAGGCA-TTATTTTCTTTTCCGGATCTAAGCTGGTCaaaaacactccaaatgctcaattttttacaaaaaataaaaatatagtttatcttaggcttaactttcaacaatgtcaattacaattcgtagatcaacacaaaaatgtaggcattattttcttttccggatctaagctggtcgcattatacaaat
5 sequences could not be aligned to this reference sequence:
Unaligned ( gi|10 ): TTACTCAGATACCTATATCGATTGTCATTTTGTTATGGGGAGATGAACAAACATGACATGTAAATCAACTAATTTTCCTTGTTCAAAAGTATATCAGAGATTCTGGTAGATTTACTGTATGACTACCCTCACATCATATTATATTAATCAAATACCATCACATGTGTATTACTTATTTTCTTTCTAATGTAACTACAAATTATCATGTCTTACTTATTGTAATTAGTATATATTGACAGTTG
Unaligned ( gi|15 ): AGGATATCTATTGGAGTGGTTTAAAAGCTATTCAAGTAACAGATCACAGAAAGTAATGTACAGAAACTTATTTTCTTCTATAAAACATACTAATGCAGGCCATGTACTTCGTCCACTTTTATTTTTGAT
Unaligned ( gi|19 ): TAACAGATCACAAAATGCAATGCACAGAAACTTGGTTTTTTTTTTCTGTAAAGCACAGGCAATGTAAATGTACCCAAAGGTTCT
Unaligned ( gi|20 ): GTATGCCTCAAGGGTCTGTACCAAGACCTTTCTTATTTTTGTTATACACGTACATAAATGATGAT
Unaligned ( gi|23 ): ATCATTGTAGTAACATTTATTAAGAAATCTTTAC