lowQualScore : 1 1 11111 2 1111 1 1111 22222222222222222 111111 8888888888888888888888888888888888888888888 1111 222222 11 111111 5555555555555555555 1111 1111 33333333333333 11 1
lowQualScore : 2 2 2 2 0 4 777 4 77777 3 444 3 1 44 3 3 0 44 3 2 7 5 0 0 1111 2 2 66 2 8888 2 4 3333 33333333333333333 8888 55 5 444444 2222222222222222222222222222222222222222222 5 9999 4 4 5 5 888 66 5 888888 77 5 6 11 6 999 8 555555 2222222222222222222 3333 888 8 3333 00000000000000 8 8 11 0 9 5
lowQualScore : . . . . . . ... . ..... . ... . . .. . . . .. . . . . . . .... . . .. . .... . . .... ................. .... .. . ...... ........................................... . .... . . . . ... .. . ...... .. . . .. . ... . ...... ................... .... ... . .... .............. . . .. . . .
lowQualScore : 2 2 4 2 3 4 000 0 00000 6 111 6 0 22 3 1 9 66 0 3 5 8 2 8 6666 7 7 33 7 3333 7 4 0000 22222222222222222 9999 11 7 777777 7777777777777777777777777777777777777777777 7 6666 0 0 0 0 888 99 1 888888 99 7 7 00 4 888 0 000000 8888888888888888888 2222 888 0 0000 00000000000000 0 0 00 2 8 5
consensus : CCGAATGGCTACTCGCCT-AAA---A-CA---N-C-AATCAA-T-T-AACTTG-GG-TGTGAAAG--GGGCTCTCAAGAGGGAACGCAGGTAGA---NTT-ACCTG-T--G-T----TTA-CCTG----TAGT-NTG-CA----------TA---TTAT-TA-TGG-----AG-------------AA-----------GA-----------A---TCTTC-AC---ATTTTATTCAGNA-TAC-GCAACT---T--GTATTTATTT--TCATAT--A-TT-TTA--CACGTAACT-ATATA-AC-T-A--ATT--------CAA--------AAA-GN-AAA-CNTTGTT-AA--A-ATA--A--TA----T-A-AAA-ATT--AGTTTGACTATATATAATGA
Reference ( gi|8 ) : CTGAATGCCCACTCCCTT-AAA---A-TA---T-C-AATCAA-T-T-AACTTG-GG-TGCGATAG--GGGTTCCCAAGAGAGAACGCAGGTAGA---CTT-ACCTG-T--G-T----TTA-CGTG----TAGT-TTG-CA----------TA---TTAT-TA-TGG-----AG-------------AA-----------GA-----------A---TCTTC-AC---TTTTTATTCGGAA-TAC-GCAACT---T--GTGTTTA--T--TCATAT--A-TT-TTA--CACGTAACT-ATATA-AC-T-A--ATT--------CAA--------AAA-GT-AAA-CATTGTT-AA--A-ATA--A--TA----T-A-AAA-ATT--AGTTTGACTATATATAATAA
gi|3 : CCGAATGGTTACTCGCCT-AAA---A-CAACAG-C-AGTCAT-T-T-AATTTG-GG-TGTGA--G--CCCCTCTCAAGAGGGAACGCAGGTAGA---CAT-ACCTG-T--G-T----TTA-CCTG----CAGT-ATG-CA----------TACTATTAT-TA-TGA-----AGGTACCGTGCAGAAAA-----------CA-----------A---GCTTC-AC---ATTTTATTCAGAA-TAC-ACAACT---T--GTATTTA--T--TCTCATTCA-TT-TTA--CATGTAACT-TCATA-AC-T-A--ATTTATACCATCAATGATAATGAAATGA-AAA-CATTGTC-AA--A-ATT--A--TA----T-A-AAA-ATT--GGTTTGACTATATA
gi|13 : gtatgcCCGAATGGCTACTGACCT-AAA---A-CA---A-C-ATTCGG-T-T-AACTTA-GT-AGTAAAAA--GGGCTCTTAAGAGGGGACTCAGGTAGA---GAT-ACCTG-TACG-TGTAATTA-CCTG----TAGT-GTA-CA----------TA---atgagaagtagtgcttt
gi|2 : tgtttcCTGAACGGCTACTTACCT-ACA---C-CA---A-C-ATTTAA-T-T-AACTAA-GG-TGCGAACG--AACGTCTAAAGAGGGAACGCAG--AG-----TT-ACCTG-T--G-A----TTA-CCTG----TAG---TG-CA----------TA---TTGT-acagtgcagtat
gi|6 : tccCCGAACGGCTACTTACCT-AAACCAA-CA---T-CTAATCAA-C---AA---------GTGAAAG--GGGCTCTCAAG-GAG----------------TT-ATCTG-T--G-T----TTT-CCTG----TAGT-GTA-CG----------TA---GTAT-attttaaaaggtactttctgtttgcctacagtgtaaatgaagcagaaagatcttcacagtttattcagtatatgcagttgtatctgctttcataaatcattacaataacataactgatttacaccacgaacttcattcaaaatgtcagataaagcgttcaaattctactaaataaataacatagaactatattaataa
gi|4 : caaggtagtatgtttcgtaggtcgtggcagctgtattcGAATGGCCATCCAATT-AAA---A-TA---TAC-AATCAA-T-T-CCGTTGAGG-TGTGA-AA--GGGCTCTCAAGAGGGAAAGCAGGT--A---CTT-CCCTA-T--G-T----TTA-CCTGT---TAGTAATA-CA----------GA---TTA--TA-TGG-----AG-------------AAAGTGCAAGAACAA-----------A---TCTTC-ACTATTTTTTATTCAGAATTAT-G-AAC----T--G-GTTTAT-T--TCATAT--A--T-TTA--CATGTGACT-ATATA-ACTT-A--ATT--------CAA--------AAA-GTAAAA-CATTGTT-AA--AGATA--AATTAAAATT-AGAAA-ATT--AGTTTAACTA-ATATAATGActagtattatagagtacatgtgttacttttagtaaaaaaaggagggaattctgcatatcttattcagtacacggcatgattatgaatacaagttgcgtatactgaataaaatcagatatacctattggtgg
gi|15 : gttcccaGAATGGCTATTCGCTTGAAA---A-TA---A-C-AATCAA-T-T-AACTTG-GG-TGTGAATG--GGGCT-CCAAGAGGGAGCACAGGTAGA---TAT-ACCT--T--G-C----ATA-CCTG----TAtaagtagtgatttt
gi|18 : cGAATGGCTACTTGCTT-AAA---A-TA---A-C--ATCAA---T-AACTTG-GG-ttcactt
gi|9 : gtgccaATGCCCACTCGCTG-AAA---AATA---T-C-AA-CAA-T-TTAACTTG-GG-TGTGATAA--GGGTTCCCAAGAGGGAACGC-GGTAGA---CTT-ACCTGCT--G-T----TTA-CGTG----TAGT-TTGCCA----------TA---TTGT-TA-TGG-----AG-------------AA-----------G------------A---TCTTCAAC---TTTTTATTCGGAA-TACGGCAACT---T--GTTTTTT--T--TCATAT--ATTT-TTA--CACGTAACT-ATATA-AC-TAA--ATT--------C-A--------AAA-GT-AAACCCCTGTT-AA--A-ATA--A--TA----TAA-AAA-ATT--AATccgtga
gi|17 : ccccgacATGGCTACTCC--T-AAA---A-TA---A-C-AATCAA-TCT-AATT---GG-TGTGAAAG--GGGCTCTCTAGAGGGAACCCA-GTGGA---CTT-A-CTG-T--G-T----TTA-CCTG----T
gi|7 : A---A-CA---T-C-AA---A-T-T-A--TTA-AGCTGTGAAAG--GGGCTCTCAAGGGGAAAC------AG-----TT-ACCTG-C--G-C----TTA-CCAG----TAGT-GTT-CA----------TA---TTA
gi|12 : ggctgttttccctcacggctactggcctaaacc-C-AATCAAAT-T-AACATA-AG-TGTGA-AGACGGACTACTTGGAG-GAACATAGGTAGA---GTTAATATG-T--GTT----TTACCAAG----TAGTGTCA-CA----------TA---cctagaactatagaggtatctgtgtgttacttgtagtgtaaataaagcagaaaaatctctacattttattcagtatatgcagcttgtatttattttcataaatcactatatttataccaccatcaatgcacacaataaaggaaa
gi|1 : tgatacgtctactggcaaagaaccagCTTA-GG-TGCGAAAG--GGGT-CTCAAGGGGGAGCACAGGTAGAGTATTT-ATCTG-TA-G-T----GTA---TA----TAGTATTA-TAGAGGTACCTGTG---CTATCTA-TAGTGTAAAG-------------AA-----------GACAGACAAAAAAA---TCTTC-AC---ATTTTATTCAGAA-TAC-AAAACTACATAAATATTTATTT--TCATAT--A-TT-TGAAGAACATAACTGATTTATAC-C-ATTACT--------GAA--------AAA-GG-AAA-GCTTGTC-AATTG-AT---A--TA----A-A-AAA-ATT--AGTTTGACTATaatgtgatagaggtactgcgttttacctaagttgtaaaataagcagaaaatct
gi|11 : caacatagcacaagcttcgcatgttgggatggctgtatccagataggtttaccagcctaaacG--GGGTTCTCAAGGGGGAACACAGAT-GA---GTT-ACCTG-T--G-T----TTA-C-TGAAC-TAGT-CTG--A----------TA---Tgatgactagtgcatttttcccctaatata
gi|5 : CTCAAGGGGGAACACAGATAGA---GTT-ACCTG-T--G-T----TTA-CCTGAACATAGT-ATG--A----------TA---GTAacctagtattagattacggtacctatgttcagtgaataaagcagaaaaatcttcgcatttattgatgtatacgaactttgtatttttatattttcataaatcattagatttataccattac
gi|7 : ctgttccctcgaacgtctgctggcctaaaccaacgtctaactaaTAGA---GGT-ATCTG-T--G-TG---TTA-CTTG----TAGT-GTA-AA----------TA---------A-AGC-----AG-------------AA-----------AA-----------A---TCTCT-AC---ATTTTATTCAGTA-TAT-GCAGCT---T--GTATTTATTT--TCATAA--A-Tcctagtattagatactggtacctatgttcagngtacctagtattagatactggtacctatgtttacctgtacataatgtaaataaagcagaaaaaatcttcgcattttattgagtatacgcaacttgtattttatattttcataaatcattagatttataccatc
gi|5 : ggctgttttccctcacggctactggcctaaaccaacatcaaattattaagctgtgaaaggggctctcaaggggaaacagttacctgcgcttaccagtagtgttcatattacctagaactaT-ACCTA-T--G-T----TTA-CCTG----TA-------CA----------TA---ATGT-AAATAA-----AGCAGA---------AA-----------AA-----------A---TCTTC-GC---ATTTTATTGAGTA-TAC-GCAACT---T--GTATTT---------TAT--A-TT-TTcactatatttataccaccatcaatgcacacaataaaggaaa
gi|2 : ctgttccctcgaacgtctgctggcctaaaccaacgtctaactaactcaagggggaacacagatagagttacctgtgtttacctgaacatagtatgatagtacctagtattagatactggtacctatgttcagngtacctagtattagatactggA-TGA-----AG-------------CA-----------GA-----------AAGATCTTC-AC---AGTTTATTCAGTA-TAT-GCAG-T---T--GTATCTGCTT--TCATAA--A-TCATTA--CA-ATAAC----ATA-AC-T-G--ATT--------TAC--------ACC-AC-GAA-CTTCATTCAA--A-ATGTCA--GA----T-A-AAGCGTTCAAATTCTACTAAATA-AATAAcataaatcattagatttataccatc
gi|6 : tccctgaacggctacttacctacaccaacatttaattaactaaggtgcgaacgaacgtctaaagagggaacgcagagttacctgtgattacctgtagtgcatattgtattttaaaaggtactttctgtttgcctacagtgtaaTTTTATTCAGTA-TAC-GCAACT---T--GTATTCA--TAATCATcatagaactatattaataa
3 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|10 ): ATAGAGTTTATTTGTATTTTATATAGTGTTAAGAGGTACCGTGTGTTTATCTGTGTGTAGAAGGAAACAGAGACATCTTCAACAATGGATTTAGAGTGCATAACGTCTTGCAATTTTTTGTATATTTTAAGTACATAAAGTGTTACACAATCATCAATAAGAAAAGGAAAGACACAATGATGTAAAAATTAGTTGACCATATAATGGTGGACTT
Unaligned ( gi|14 ): AGGTACCCGTGTCTACCTATAATGTAAAGAAAGCAGAAAAAATCTTCATTTTATTCAGTATTATTTCCATAAATCAATATAAGTGTACACATATCTGATTTATACCATG
Unaligned ( gi|16 ): TATAGAGGTACCTGTGTTATCTGTAGTGTAGAGGAAACAGAGAAATCTTCAAAATGTATTTAGAGTGCACAACGTGTTGCAATATTTA
Alignments
lowQualScore : 1111 111111111111 555555555555555555555555555555555555555555555555555555555 1111 11 1111 4444444444444444444 111 111111
lowQualScore : 3 22 3 333 44 1111 6 3 3 555 5 3 00 2 4 1 0 44444 2 2 000000000000 2 22 2 6666 6666666 2 9999 44 888 666666666666666666666666666666666666666666666666666666666 3 3 3 3 3 44 3 1 3 3 1 555 555 77 4444 44 2 4 5 55 1 2222 5 5 666 77 4444444444444444444 5 66 999 5 77 5 333 77 222222 5 5 77 7 3
lowQualScore : . .. . ... .. .... . . . ... . . .. . . . . ..... . . ............ . .. . .... ....... . .... .. ... ......................................................... . . . . . .. . . . . . ... ... .. .... .. . . . .. . .... . . ... .. ................... . .. ... . .. . ... .. ...... . . .. . .
lowQualScore : 3 11 1 555 11 1111 2 1 1 555 7 1 66 9 6 4 5 55555 1 1 888888888888 0 88 0 2222 5555555 0 8888 88 333 333333333333333333333333333333333333333333333333333333333 3 3 3 3 1 22 1 0 1 3 8 888 888 99 1111 77 9 0 7 77 7 1111 7 7 777 99 0000000000000000000 7 77 444 7 99 7 999 99 666666 7 7 99 5 2
consensus : CCGA-ACGGCTACTCGCCT-AAAA-C-AA-CAA---TCAA-T-T-AACTTG-GG-TGTGAA-AGGGGCT-CTCAAGAGGGAACGCAGGTAGAGT---T-ACC-T------------G-T--G-T----T-------TACC-TG----TAGT-GTGC-ATA---T---TGT--ATGGA----G-------------A--------A-----------AA-A-TCTTC-A-C-A--TTTTATTCA-GNA-TAC-GCAAC---T---T--GTATT----TATTTTCATANA-TT-TTA--CACGTAA----CT-ATATA-AC-T-A--ATT--------CAA--------AAA-G-NAAA-CNTTGTC-AA--A-ATA--A--TA----T-A-AAA-ATT--AGTTTGACTATATATAATGA
Reference ( family-912 ) : CCGA-ATGGCTACTCGCCT-AAAA-C-AN-CAA---TCAA-T-T-AACTTG-GG-TGTGAA-AGGGGCT-CTCAAGAGGGAACGCAGGTAGANT---T-ACC-T------------G-T--G-T----T-------TACC-TG----TAGT-NTGC-ATA---T---TAT-TATGGA----G-------------A--------A-----------GA-A-TCTTC-A-C-A--TTTTATTCA-GNA-TAC-GCAAC---T---T--GTATT----TATTTTCATATA-TT-TTA--CACGTAA----CT-ATATA-AC-T-A--ATT--------CAA--------AAA-G-NAAA-CNTTGTT-AA--A-ATA--A--TA----T-A-AAA-ATT--AGTTTGACTATATATAATGA
gi|1 : CTTA-GG-TGCGAA-AGGGG-T-CTCAAGGGGGAGCACAGGTAGAGTATTT-ATC-TGTAGTGTATATAG-T--A-T----TATAGAGGTACC-TG----TGCT-ATCT-ATA---G---TGT-AAAGAA----G-------------ACAGACAAAA-----------AA-A-TCTTC-A-C-A--TTTTATTCA-GAA-TAC-AAAAC---TACATAAATATT----TATTTTCATATA-TT-TGAAGAACATAA----CTGATTTATAC-C-ATTACT--------GAA--------AAA-G-GAAA-GCTTGTC-AATTG-AT---A--TA----A-A-AAA-ATT--AGTTTGACTAT
gi|10 : caacatagcacaagcttcgcatgttgggatggctgtatccagataggtttaccagcctaaacAGAGG---T-ACCGT------------G-T--G-T----T-------TATC-TG----T----GTGT-AGA------------A-GGA----A-------------ACAG-----A-----------GACA-TCTTC-AAC-A--ATGGATTTA-GAG-TGC-ATAACGTCT---T--GCAAT----T--TTTTGTATA-TT-TTAAGTACATAAAGTGTT-ACACA-AT-C-A----T--------CAATAAGA---AAA-G-GAAA-----GAC-AC--A-ATG--A--TG----T-A-AAA-ATT--AG-TTGACCATATAgatgactagtgcatttttcccctaatata
gi|11 : atagagtttatttgtattttatatagtgttaGGGGTT-CTCAAGGGGGAACACAGAT-GAGT---T-ACC-T------------G-T--G-T----T-------TA-C-TGAAC-TAGT-CTG--ATA---T---atggtggactt
gi|11 : A----G-------------A--------A-----------AA-A-TCTTC-G-C-A--TTT-ATTGATGTA-TAC-G-AAC---T---TT-GTATTTTTATATTTTCATAAA-Tacctagtattagattacggtacctatgttcagtgaataaagcagaaaaatcttcgcatttattgatgtatacgaactttgtatttttatattttcataaatcattagatttataccattac
gi|12 : ggggttctcaagggggaacacagatgagttacctgtgtttactgaactagtctgatatacctagtattagattacggtacctatgttcagtgaataaagcCTACTGGCAA-AGAA-CCAG-CAA---TCAAAT-T-AACATA-AG-TGTGAAGACGGACTACTT--GGAGGAACATAGGTAGAGT---TAATA-T------------G-T--GTT----T-------TACCAAG----TAGT-GT-C-ACA---TAAATGT-GATAGA----G-------------cattagatttataccattac
gi|13 : tgatacgtCCGA-ATGGCTACTGACCT-AAAA-C-AA-CAT---TCGG-T-T-AACTTA-GT-AGTAAA-AAGGGCT-CTTAAGAGGGGACTCAGGTAGAGA---T-ACC-T------------G-TACG-TGTAAT-------TACC-TG----TAGT-GTAC-ATA---gtactgcgttttacctaagttgtaaaataagcagaaaatct
gi|14 : tgtttc---T-ACC-C------------G-T--G-T----C-------TACC-TA----TAAT-GTAA-AGA------------AAGCA----G-------------A--------A-----------AA-AATCTTC-A------TTTTATTCA-GTA-Tacagtgcagtat
gi|15 : aggCGA-ATGGCTATTCGCTTGAAAA-T-AA-CAA---TCAA-T-T-AACTTG-GG-TGTGAA-TGGGGCT-C-CAAGAGGGAGCACAGGTAGATA---T-ACC-T--------------T--G-C----A-------TACC-TG----TAtatttccataaatcaatataagtgtacacatatctgatttataccatg
gi|16 : TAGAGG---T-ACC-T------------G-T--G-T----T--------ATC-TG----TAGT-GTAG-A----------------GGAAACAG-------------A--------G-----------AA-A-TCTTC-A-A-A--ATGTATTTA-GAG-TGC-ACAAC---G---T--GTttcactt
gi|17 : ta-ATGGCTACTC--CT-AAAA-T-AA-CAA---TCAA-TCT-AATT---GG-TGTGAA-AGGGGCT-CTCTAGAGGGAACCCA-GTGGACT---T-A-C-T------------G-T--G-T----T-------TACC-TG----Ttgcaatattta
gi|18 : GA-ATGGCTACTTGCTT-AAAA-T-AA-C-A---TCAA---T-AACTTG-GGCCGTGA
gi|2 : gtgccaCTGA-ACGGCTACTTACCT-ACAC-C-AA-CAT---TTAA-T-T-AACTAA-GG-TGCGAA-CGAACGT-CTAAAGAGGGAACGC----AGAGT---T-ACC-T------------G-T--G-A----T-------TACC-TG----TAG---TGC-ATA---T---TGT-
gi|2 : tcc-T--G-T----T-------TGCC-TA----CAGT-GTAA-ATG------------AAGCA----G-------------A--------A-----------AG-A-TCTTC-A-C-A--GTTTATTCA-GTA-TAT-GCAG----T---T--GTATC----TGCTTTCATAAA-TCATTA--CA-ATAA----C----ATA-AC-T-G--ATT--------TAC--------ACC-A-CGAA-CTTCATTCAA--A-ATGTCA--GA----T-A-AAGCGTTCAAATTCTACTAAATA-AATAAattttaaaaggtactttctgtttgcctacagtgtaaatgaagcagaaagatcttcacagtttattcagtatatgcagttgtatctgctttcataaatcattacaataacataactgatttacaccacgaacttcattcaaaatgtcagataaagcgttcaaattctactaaataaataacatagaactatattaataa
gi|3 : tccctgaacggctacttacctacaccaacatttaattaactaaggtgcgaacgaacgtctaaagagggaacgcagagttacctgtgattacctgtagtgcatattgtattttaaaaggtactttcCCGA-ATGGTTACTCGCCT-AAAA-C-AA-CAGCAGTCAT-T-T-AATTTG-GG-TGTGA---GCCCCT-CTCAAGAGGGAACGCAGGTAGACA---T-ACC-T------------G-T--G-T----T-------TACC-TG----CAGT-ATGC-ATACTAT---TAT-TATGAA----GGTACCGTGCAGAAA--------A-----------CA-A-GCTTC-A-C-A--TTTTATTCA-GAA-TAC-ACAAC---T---T--GTATT----TATTCTCATTCA-TT-TTA--CATGTAA----CT-TCATA-AC-T-A--ATTTATACCATCAATGATAATGAAATG-AAAA-CATTGTC-AA--A-ATT--A--TA----T-A-AAA-ATT--GGTTTGACT--ATATAATGAcatagaactatattaataa
gi|4 : gtatgcGA-ATGGCCATCCAATT-AAAA-T-ATACAA---TCAA-T-T-CCGTTGAGG-TGTGAA-AGGG-CT-CTCAAGAGGGAAAGCAGGT--ACT---T-CCC-T------------A-T--G-T----T-------TACC-TGT---TAGTAATAC-AGA---T---TA--TATGGA----G-------------A--------AAGTGCAAGAACAA-A-TCTTC-A-CTATTTTTTATTCA-GAATTAT-G-AAC---T---G--G--TT----TA-TTTCATATA--T-TTA--CATGTGA----CT-ATATA-ACTT-A--ATT--------CAA--------AAA-GTAAAA-CATTGTT-AA--AGATA--AATTAAAATT-AGAAA-ATT--AGTTTAACTA-ATATAATGAgaagtagtgcttt
gi|5 : gttcccaCGA-ACGTCTGCTGGCCT-AAAC-C-AA-CG----TC-----T-AACT-----------A-A-------CTCAAGGGGGAACACAGATAGAGT---T-ACC-T------------G-T--G-T----T-------TACC-TGAACATAGT-ATG--ATA---G---TAtaagtagtgatttt
gi|5 : ctgttccct---T-ACC-T------------A-T--G-T----T-------TACC-TG----TA------C-ATA---A---TGTAAATAAA----GCAGA---------A--------A-----------AA-A-TCTTC-G-C-A--TTTTATTGA-GTA-TAC-GCAAC---T---T--GTATTTTA-TATTTTCATAAA-Tcctagtattagatactggtacctatgttcagngtacctagtattagatactggtacctatgtttacctgtacataatgtaaataaagcagaaaaaatcttcgcattttattgagtatacgcaacttgtattttatattttcataaatcattagatttataccatc
gi|6 : ctgttccctcgaacgtctgctggcctaaaccaacgtctaactaactcaagggggaacacagatagagttacctgtgtttacctgaacatagtatgatagtacctagtattagatactggtacctatgttcagngtacctagtattagatactggCCGA-ACGGCTACTTACCT-AAAC-C-AA-CAT---CTAA-T-C-AAC-----A-AGTGAA-AGGGGCT-CTCAAG--------------GAGT---T-ATC-T------------G-T--G-T----T-------TTCC-TG----TAGT-GTAC-GTA---G---TAT-cattagatttataccatc
gi|6 : caaggtagtatgtttcgtaggtcgtggcagctgtattc-A--TTTTATTCA-GTA-TAC-GCAAC---T---T--GTATT----CATAATCATctagtattatagagtacatgtgttacttttagtaaaaaaaggagggaattctgcatatcttattcagtacacggcatgattatgaatacaagttgcgtatactgaataaaatcagatatacctattggtgg
gi|7 : caaggtagtatgtttcgtaggtcgtggcagctgtattcccgaacggctacttacctaaaccaacatctaatcaacaagtgaaaggggctctcaaggagttatctgtgttttcctgtagtgtacgtagtatctagtattatagagtacatgtgttacttttagtaaaaaaaggagggaattctgcatatcttattcagtacacggc-ACGGCTACTGGCCT-AAAC-C-AA-CA----TCAAAT-T-A--TTA-AGCTGTGAA-AGGGGCT-CTCAAGGGGAAAC--------AGT---T-ACC-T------------G-C--G-C----T-------TACC-AG----TAGT-GTTC-ATA---T---TAcagatatacctattggtgg
gi|7 : ggctgttttccctcTAGAGG---T-ATC-T------------G-T--G-TG---T-------TACT-TG----TAGT-GTAA-ATA------------AAGCA----G-------------A--------A-----------AA-A-TCTCT-A-C-A--TTTTATTCA-GTA-TAT-GCAGC---T---T--GTATT----TATTTTCATAAA-Tcctagaactatagaggtatctgtgtgttacttgtagtgtaaataaagcagaaaaatctctacattttattcagtatatgcagcttgtatttattttcataaatcactatatttataccaccatcaatgcacacaataaaggaaa
gi|8 : ggctgttttccctcacggctactggcctaaaccaacatcaaattattaagctgtgaaaggggctctcaaggggaaacagttacctgcgcttaccagtagtgttcatattacctagaactaCTGA-ATGCCCACTCCCTT-AAAA-T-AT-CAA---TCAA-T-T-AACTTG-GG-TGCGAT-AGGGGTT-CCCAAGAGAGAACGCAGGTAGACT---T-ACC-T------------G-T--G-T----T-------TACG-TG----TAGT-TTGC-ATA---T---TAT-TATGGA----G-------------A--------A-----------GA-A-TCTTC-A-C-T--TTTTATTCG-GAA-TAC-GCAAC---T---T--GTGTT----TA--TTCATATA-TT-TTA--CACGTAA----CT-ATATA-AC-T-A--ATT--------CAA--------AAA-G-TAAA-CATTGTT-AA--A-ATA--A--TA----T-A-AAA-ATT--AGTTTGACTATATATAATAAcactatatttataccaccatcaatgcacacaataaaggaaa
gi|9 : CCGACATGCCCACTCGCTG-AAAAAT-AT-CAA----CAA-T-TTAACTTG-GG-TGTGAT-AAGGGTT-CCCAAGAGGGAACGC-GGTAGACT---T-ACC-T------------GCT--G-T----T-------TACG-TG----TAGT-TTGCCATA---T---TGT-TATGGA----G-------------A--------A-----------G--A-TCTTCAA-C-T--TTTTATTCG-GAA-TACGGCAAC---T---T--GT-TT----T-TTTTCATATATTT-TTA--CACGTAA----CT-ATATA-AC-TAA--ATT--------C-A--------AAA-G-TAAACCCCTGTT-AA--A-ATA--A--TA----TAA-AAA-ATT--AAT
Alignments
lowQualScore : 1111 111 4444444444444444444444444444 11111111111 1111 11 1111 4444444444444444444 111 111111
lowQualScore : 3 22 3 6666 3 3 1111 6 3 555 5 3 00 2 4 1 0 1 1 1 22 1 5555 1 8888 1 000 1 7777777777777777777777777777 5555 44444444444 44 3 3 2 33 2 1 2 2 2 8888888 44 0 2222 0 1 3 5 55 1 2222 5 5 666 77 4444444444444444444 5 66 999 5 77 5 333 77 222222 5 5 77 7 3
lowQualScore : . .. . .... . . .... . . ... . . .. . . . . . . . .. . .... . .... . ... . ............................ .... ........... .. . . . .. . . . . . ....... .. . .... . . . . .. . .... . . ... .. ................... . .. ... . .. . ... .. ...... . . .. . .
lowQualScore : 1 11 1 5555 1 1 1111 2 1 555 7 1 66 9 6 4 9 8 8 7 44 7 4444 7 5555 9 111 0 3333333333333333333333333333 7777 66666666666 22 1 1 9 99 9 0 9 9 8 5555555 22 3 9999 4 0 6 7 77 7 1111 7 7 777 99 0000000000000000000 7 77 444 7 99 7 999 99 666666 7 7 99 5 2
consensus : CCGA-ACGGCTACTCGCCT-AAAA----C-A-ACAA---TCAA-T-TAACTTG-GG-TGTGAA-AGGGGCT-CTCAAGAGGGAACGCAGGTAGAGTT-ACC-TG-T--G-T----TTACC-TG----TAGT-GTA-CATA----T------------G-T-A---TGNAG----AA-----------AA--ATCTTC-A-C-A--TTTTATTCA-GNA-TAC-GCAAC---T---T--GTATT----TATTTTCATANA-TT-TTA--CACGTAA----CT-ATATA-AC-T-A--ATT--------CAA--------AAA-G-NAAA-CNTTG-TCAA--A-ATA--A--TA----T-A-AAA-ATT--AGTTTGACTATATATAATGA
Reference ( family-912 ) : CCGA-ACGGCTACTCGCCT-AAAA----C-A-ACAA---TCAA-T-TAACTTG-GG-TGTGAA-AGGGGCT-CTCAAGAGGGAACGCAGGTAGAGTT-ACC-TG-T--G-T----TTACC-TG----TAGT-GTG-CATAT---T------------G-T-A---TGGAG----AA-----------AA--ATCTTC-A-C-A--TTTTATTCA-GNA-TAC-GCAAC---T---T--GTATT----TATTTTCATANA-TT-TTA--CACGTAA----CT-ATATA-AC-T-A--ATT--------CAA--------AAA-G-NAAA-CNTTG-TCAA--A-ATA--A--TA----T-A-AAA-ATT--AGTTTGACTATATATAATGA
gi|1 : CTTA-GG-TGCGAA-AGGGG-T-CTCAAGGGGGAGCACAGGTAGAGT------------A-T----TTATC-TG----TAGT-GTA-TATAG---T------------ATT-A---TAGAG----
gi|1 : caacatagcacaagcttcgcatgttgggatggctgtatccagataggtttaccagcctaaacTAGAGGT-ACC-TG-T--G------CTATC-TA----TAGT-GTA-AAGAA---G------------A-C-A---GACAA----AA-----------AA--ATCTTC-A-C-A--TTTTATTCA-GAA-TAC-AAAAC---TACATAAATATT----TATTTTCATATA-TT-TGAAGAACATAA----CTGATTTATAC-C-ATTACT--------GAA--------AAA-G-GAAA-GCTTG-TCAATTG-AT---A--TA----A-A-AAA-ATT--AGTTTGACTATgtacctgtgctatctatagtgtaaagaagacagacaaaaaaatcttcacattttattcagaatacaaaactacataaatatttattttcatatatttgaagaacataactgatttataccattactgaaaaaggaaagcttgtcaattgatataaaaaaattagtttgactatgatgactagtgcatttttcccctaatata
gi|10 : caacatagcacaagcttcgcatgttgggatggctgtatccagataggtttaccagcctaaaccttaggtgcgaaaggggtctcaagggggagcacaggtagagtatttatctgtagtgtatatagtattaAGAGGT-ACCGTG-T--G-T----TTATC-TG----T-GT-GTA-GA-A-----------------G-G-A---AACAG----AG-----------AC--ATCTTC-AAC-A--ATGGATTTA-GAG-TGC-ATAACGTCT---T--GCAAT----T--TTTTGTATA-TT-TTAAGTACATAAAGTGTT-ACACA-AT-C-A----T--------CAATAAGA---AAA-G-GAAA-----G-ACAC--A-ATG--A--TG----T-A-AAA-ATT--AG-TTGACCATATAgatgactagtgcatttttcccctaatata
gi|11 : atagagtttatttgtattttatatagtgttaGGGGTT-CTCAAGGGGGAACACAGAT-GAGTT-ACC-TG-T--G-T----TTA-C-TGAAC-TAGT-CTG--ATAT---atggtggactt
gi|11 : T-ACC-TA-T--G-T----TCA--------------GTG-AATA---------------------A---AGCAG----AA-----------AA--ATCTTC-G-C-A---TTTATTGATGTA-TAC-G-AACT--T---T--GTATTTTTATATTTTCATAAA-Tacctagtattagattacggtacctatgttcagtgaataaagcagaaaaatcttcgcatttattgatgtatacgaactttgtatttttatattttcataaatcattagatttataccattac
gi|12 : ggggttctcaagggggaacacagatgagttacctgtgtttactgaactagtctgatatacctagtattagattacgg-ACGTCTACTGGCAA-AGAA----CCA-GCAA---TCAAAT-TAACATA-AG-TGTGAAGACGGACTACTT--GGAGGAACATAGGTAGAGTTAATA-TG-T--GTT----TTACCAAG----TAGT-GT--CACATAAAT------------G-TGA---TAGAG----cattagatttataccattac
gi|13 : tgatCCGA-ATGGCTACTGACCT-AAAA----C-A-ACAT---TCGG-T-TAACTTA-GT-AGTAAA-AAGGGCT-CTTAAGAGGGGACTCAGGTAGAGAT-ACC-TG-TACG-TGTAATTACC-TG----TAGT-GTA-CATAgtactgcgttttacctaagttgtaaaataagcagaaaatct
gi|14 : tgtttcAGGT-ACC-CG-T--G-T----CTACC-TA----TAAT-GTA-AAGAA---A------------G-C-A-----GA-----AA-----------AA--ATCTTC-A------TTTTATTCA-GTA------------------------T----TATTTCCATAAA-Tacagtgcagtat
gi|15 : CGA-ATGGCTATTCGCTTGAAAA----T-A-ACAA---TCAA-T-TAACTTG-GG-TGTGAA-TGGGGCT-C-CAAGAGGGAGCACAGGTAGATAT-ACC-T--T--G-C----ATACC-TG----TAcaatataagtgtacacatatctgatttataccatg
gi|16 : TAGAGGT-ACC-TG-T--G-T----T-ATC-TG----TAGT-GTA-GA-------------------G-G-A---AACAG----AG-----------AA--ATCTTC-A-A-A--ATGTATTTA-GAG-TGC-ACAAC---G---T--GTttcactt
gi|17 : ta-ATGGCTACTC--CT-AAAA----T-A-ACAA---TCAA-TCTAATT---GG-TGTGAA-AGGGGCT-CTCTAGAGGGAACCCA-GTGGACTT-A-C-TG-T--G-T----TTACC-TG----Ttgcaatattta
gi|18 : GA-ATGGCTACTTGCTT-AAAA----T-A-AC-A---TCAA---TAACTTG-GGCCGTGA
gi|2 : gtgccaCTGA-ACGGCTACTTACCT-ACAC----C-A-ACAT---TTAA-T-TAACTAA-GG-TGCGAA-CGAACGT-CTAAAGAGGGAACGC----AGAGTT-ACC-TG-T--G-A----TTACC-TG----TA---GTG-CATAT---T------------G-T-A---T
gi|2 : tcc-T--G-T----TTGCC-TA----CAGT-GTA-AATG---------------------A---AGCAG----AA-----------AG--ATCTTC-A-C-A--GTTTATTCA-GTA-TAT-GCAG----T---T--GTATC----TGCTTTCATAAA-TCATTA--CA-ATAA----C----ATA-AC-T-G--ATT--------TAC--------ACC-A-CGAA-CTTCATTCAA--A-ATGTCA--GA----T-A-AAGCGTTCAAATTCTACTAAATA-AATAAtttaaaaggtactttctgtttgcctacagtgtaaatgaagcagaaagatcttcacagtttattcagtatatgcagttgtatctgctttcataaatcattacaataacataactgatttacaccacgaacttcattcaaaatgtcagataaagcgttcaaattctactaaataaataacatagaactatattaataa
gi|3 : tccctgaacggctacttacctacaccaacatttaattaactaaggtgcgaacgaacgtctaaagagggaacgcagagttacctgtgattacctgtagtgcatattgtattttaaaaggtactttcCCGA-ATGGTTACTCGCCT-AAAA----C-A-ACAGCAGTCAT-T-TAATTTG-GG-TGTGA---GCCCCT-CTCAAGAGGGAACGCAGGTAGACAT-ACC-TG-T--G-T----TTACC-TG----CAGT-ATG-CATAC---TATTATTATGAAGG-T-ACCGTGCAG----AA-----------AACAAGCTTC-A-C-A--TTTTATTCA-GAA-TAC-ACAAC---T---T--GTATT----TATTCTCATTCA-TT-TTA--CATGTAA----CT-TCATA-AC-T-A--ATTTATACCATCAATGATAATGAAATG-AAAA-CATTG-TCAA--A-ATT--A--TA----T-A-AAA-ATT--GGTTTGACT--ATATAATGAcatagaactatattaataa
gi|4 : gtatgcGA-ATGGCCATCCAATT-AAAA----T-ATACAA---TCAA-T-TCCGTTGAGG-TGTGAA-AGGG-CT-CTCAAGAGGGAAAGCAGGT--ACTT-CCC-TA-T--G-T----TTACC-TGT---TAGTAATA-CAGAT---T------------A-T-A---TGGAG----AAAGTGCAAGAACAA--ATCTTC-A-CTATTTTTTATTCA-GAATTAT-G-AAC---T---G--G--TT----TA-TTTCATATA--T-TTA--CATGTGA----CT-ATATA-ACTT-A--ATT--------CAA--------AAA-GTAAAA-CATTG-TTAA--AGATA--AATTAAAATT-AGAAA-ATT--AGTTTAACTA-ATATAATGAgaagtagtgcttt
gi|5 : gttcccaCGA-ACGTCTGCTGGCCT-AAAC----C-A-ACG----TC-----TAACT-----------A-A-------CTCAAGGGGGAACACAGATAGAGTT-ACC-TG-T--G-T----TTACC-TGAACATAGT-ATG--ATAtaagtagtgatttt
gi|5 : ctgttccctT-ACC-TA-T--G-T----TTACC-TG----TA-------CATAA---T------------G-T-AAA-TAAAGCAGAAA-----------AA--ATCTTC-G-C-A--TTTTATTGA-GTA-TAC-GCAAC---T---T--GTATTTTA-TATTTTCATAAA-Tgtacctagtattagatactggtacctatgttcagngtacctagtattagatactggtacctatgtttacctgtacataatgtaaataaagcagaaaaaatcttcgcattttattgagtatacgcaacttgtattttatattttcataaatcattagatttataccatc
gi|6 : ctgttccctcgaacgtctgctggcctaaaccaacgtctaactaactcaagggggaacacagatagagttacctgtgtttacctgaacatagtatgatagtacctagtattagatactggtacctatgttcagngtacctagtattagatactggCCGA-ACGGCTACTTACCT-AAAC----C-A-ACAT---CTAA-T-CAAC-----A-AGTGAA-AGGGGCT-CTCAAG--------------GAGTT-ATC-TG-T--G-T----TTTCC-TG----TAGT-GTA-CGTA-----------------G-T-A---Tcattagatttataccatc
gi|6 : caaggtagtatgtttcgtaggtcgtggcagctgtattcTAGAGT--ACA-TG-T--G-T----T-ACT-TT----TAGT-AAA-AAAA--------------------------GGAG----GG-----------AA--TTCTGC-A-T-A--TCTTATTCA-GTA-CAC-Gctagtattatagagtacatgtgttacttttagtaaaaaaaggagggaattctgcatatcttattcagtacacggcatgattatgaatacaagttgcgtatactgaataaaatcagatatacctattggtgg
gi|6 : caaggtagtatgtttcgtaggtcgtggcagctgtattcccgaacggctacttacctaaaccaacatctaatcaacaagtgaaaggggctctcaaggagttatctgtgttttcctgtagtgtacgtagtatctagtatta-A--TTTTATTCA-GTA-TAC-GCAAC---T---T--GTATT----CATAATCATgcatgattatgaatacaagttgcgtatactgaataaaatcagatatacctattggtgg
gi|7 : caaggtagtatgtttcgtaggtcgtggcagctgtattcccgaacggctacttacctaaaccaacatctaatcaacaagtgaaaggggctctcaaggagttatctgtgttttcctgtagtgtacgtagtatctagtattatagagtacatgtgttacttttagtaaaaaaaggagggaattctgcatatcttattcagtacacggc-ACGGCTACTGGCCT-AAAC----C-A-ACA----TCAAAT-TA--TTA-AGCTGTGAA-AGGGGCT-CTCAAGGGGAAAC--------AGTT-ACC-TG-C--G-C----TTACC-AG----TAGT-GTT-CATAT---T------------cagatatacctattggtgg
gi|7 : ggctgttttccctcTAGAGGT-ATC-TG-T--G-TG---TTACT-TG----TAGT-GTA-AATA---------------------A---AGCAG----AA-----------AA--ATCTCT-A-C-A--TTTTATTCA-GTA-TAT-GCAGC---T---T--GTATT----TATTTTCATAAA-Tacctagaactatagaggtatctgtgtgttacttgtagtgtaaataaagcagaaaaatctctacattttattcagtatatgcagcttgtatttattttcataaatcactatatttataccaccatcaatgcacacaataaaggaaa
gi|8 : ggctgttttccctcacggctactggcctaaaccaacatcaaattattaagctgtgaaaggggctctcaaggggaaacagttacctgcgcttaccagtagtgttcatattacctagaactaCTGA-ATGCCCACTCCCTT-AAAA----T-A-TCAA---TCAA-T-TAACTTG-GG-TGCGAT-AGGGGTT-CCCAAGAGAGAACGCAGGTAGACTT-ACC-TG-T--G-T----TTACG-TG----TAGT-TTG-CATAT---T------------A-TTA---TGGAG----AA-----------GA--ATCTTC-A-C-T--TTTTATTCG-GAA-TAC-GCAAC---T---T--GTGTT----TATT--CATATA-TT-TTA--CACGTAA----CT-ATATA-AC-T-A--ATT--------CAA--------AAA-G-TAAA-CATTG-TTAA--A-ATA--A--TA----T-A-AAA-ATT--AGTTTGACTATATATAATAAcactatatttataccaccatcaatgcacacaataaaggaaa
gi|9 : CCGACATGCCCACTCGCTG-AAAAATATC-A-ACAA---T----T-TAACTTG-GG-TGTGAT-AAGGGTT-CCCAAGAGGGAACGC-GGTAGACTT-ACC-TGCT--G-T----TTACG-TG----TAGT-TTGCCATAT---T------------GTT-A---TGGAG-----A-----------AG--ATCTTCAA-C-T--TTTTATTCG-GAA-TACGGCAAC---T---T--GT-TT----T-TTTTCATATATTT-TTA--CACGTAA----CT-ATATA-AC-TAA--ATT--------C-A--------AAA-G-TAAACCCCTG-TTAA--A-ATA--A--TA----TAA-AAA-ATT--AAT
Alignments
lowQualScore : 1111 11111111111 555555555555555555555555555555555 11111111111 1111 11111 1111 4444444444444444444 1111 11
lowQualScore : 3 22 3 6666 3 3 1111 6 3 555 5 3 00 2 4 1 2 1 1 1 22 1 5555 777777777 1 7777777 4444 11111111111 2 33 333 333333333333333333333333333333333 1 33333333333 44 6 3 3 2 33 2 1 2 2 2 8888888 44 0 2222 22 1 3 5 11111 1 2222 5 5 666 77 4444444444444444444 5 66 999 5 5 999 77 2222 5 5 33 77 7 3
lowQualScore : . .. . .... . . .... . . ... . . .. . . . . . . . .. . .... ......... . ....... .... ........... . .. ... ................................. . ........... .. . . . . .. . . . . . ....... .. . .... .. . . . ..... . .... . . ... .. ................... . .. ... . . ... .. .... . . .. .. . .
lowQualScore : 1 11 1 5555 1 1 1111 2 1 555 7 1 66 9 6 4 1 9 9 8 55 8 7777 333333333 8 7777777 0000 55555555555 0 66 666 444444444444444444444444444444444 0 66666666666 22 2 1 1 9 99 9 0 9 9 8 5555555 22 3 9999 88 0 6 7 66666 7 1111 7 7 777 99 0000000000000000000 7 77 444 7 7 000 99 1111 7 7 66 99 5 2
consensus : CCGA-ACGGCTACTCGCCT-AAAA----C-A-ACAA---TCAA-T-TAACTTG-GG-TGTGAA-AGGGGCT-CTCAAGAGGGAACGCAGGTAGAGTT-ACC-TG-T--G-T----TTAC---------C-TG-------TA----GT-----------GT-A-CAT--A-T-------------G-T-------A---T---GCAGAA-----------AA--A-TCTTC-A-C-A--TTTTATTCA-GNA-TAC-GCAAC---T---TG--TATT----TATTTTCATANA-TT-TTA--C--ACGTAA----CT-ATATA-AC-T-A--ATT--------CAA--------AAA-G-NAAA-CNTTG-TCAAA-ATG--A--TA----T-A-AAA--ATT--AGTTTGACTATATATAATGA
Reference ( family-912 ) : CCGA-ACGGCTACTCGCCT-AAAA----C-A-ACAA---TCAA-T-TAACTTG-GG-TGTGAA-AGGGGCT-CTCAAGAGGGAACGCAGGTAGAGTT-ACC-TG-T--G-T----TTAC---------C-TG-------TA----GT-----------GT-A-CAT--A-T-------------G-T-------A---T---GNAGAA-----------AA--A-TCTTC-A-C-A--TTTTATTCA-GNA-TAC-GCAAC---T---TG--TATT----TATTTTCATANA-TT-TTA--C--ACGTAA----CT-ATATA-AC-T-A--ATT--------CAA--------AAA-G-NAAA-CNTTG-TCAAA-ATA--A--TA----T-A-AAA--ATT--AGTTTGACTATATATAATGA
gi|1 : CTTA-GG-TGCGAA-AGGGG-T-CTCAAGGGGGAGCACAGGTAGA---------G-T--A-T----TTAT---------C-TG-------TA----GT-----------GT-A-TAT--A---------------G-T-------A---T---
gi|1 : caacatagcacaagcttcgcatgttgggatggctgtatccagataggtttaccagcctaaacTAGAGGT-ACC-TG-T--G-C----T-AT---------C-TA-------TA----GT-----------GT-A-AAG--A-A-------------GAC-------A---G---ACAAAA-----------AA--A-TCTTC-A-C-A--TTTTATTCA-GAA-TAC-AAAAC---TACATAAATATT----TATTTTCATATA-TT-TGA--AGAACATAA----CTGATTTATAC-C-ATTACT--------GAA--------AAA-G-GAAA-GCTTG-TCAAT--TG--A--TA----T-A-AAAAAATT--AGTTTGACTATtatagaggtacctgtgctatctatagtgtaaagaagacagacaaaaaaatcttcacattttattcagaatacaaaactacataaatatttattttcatatatttgaagaacataactgatttataccattactgaaaaaggaaagcttgtcaattgatataaaaaaattagtttgactatgatgactagtgcatttttcccctaatata
gi|10 : caacatagcacaagcttcgcatgttgggatggctgtatccagataggtttaccagcctaaaccttaggtgcgaaaggggtctcaagggggagcacaggtagagtatttatctgtagtgtatatagtattaAGAGGT-ACCGTG-T--G-T----TTAT---------C-TG-------T-----GT-----------GT-A-GA---A-G-------------G-A-------A-------ACAGAG-----------AC--A-TCTTC-AAC-A--ATGGATTTA-GAG-TGC-ATAACGTCT---TG--CAAT----T--TTTTGTATA-TT-TTAAGT--ACATAAAGTGTT-ACACA-AT-C-A----T--------CAATAAGA---AAA-G-GAAA-----G-ACACA-ATG--A--TG----T-A-AAA--ATT--AG-TTGACCATATAgatgactagtgcatttttcccctaatata
gi|11 : atagagtttatttgtattttatatagtgttaGGGGTT-CTCAAGGGGGAACACAGAT-GAGTT-ACC-TG-T--G-T----TTACTGAACTAGTC-TGATATACCTA----GTATTAGATTACGGT-A-CCT--A-T-------------G-TTCAGTGAA---TAAAGCAGAA-----------AA--A-TCTTC-G-C-A---TTTATTGATGTA-TAC-G-AACT--T---TG--TATTTTTATATTTTCATAAA-Tatggtggactt
gi|12 : -ACGTCTACTGGCAA-AGAA----CCA-GCAA---TCAAAT-TAACATA-AG-TGTGAAGACGGACTACTT--GGAGGAACATAGGTAGAGTTAATA-TG-T--GTT----TTAC---------CAAG-------TA----GT-----------GTCA-CATAAA-T-------------G-TG------A---T---AGAGcattagatttataccattac
gi|13 : tgatCCGA-ATGGCTACTGACCT-AAAA----C-A-ACAT---TCGG-T-TAACTTA-GT-AGTAAA-AAGGGCT-CTTAAGAGGGGACTCAGGTAGAGAT-ACC-TG-TACG-TGTAATTAC---------C-TG-------TA----GT-----------GT-A-CAT--A-gtactgcgttttacctaagttgtaaaataagcagaaaatct
gi|14 : tgtttcAGGT-ACC-CG-T--G-T----CTAC---------C-TA-------TA----AT-----------GT-A-AAG--A-------------------------A---A---GCAGAA-----------AA--AATCTTC-A------TTTTATTCA-GTA------------------------T----TATTTCCATAAA-Tacagtgcagtat
gi|15 : CGA-ATGGCTATTCGCTTGAAAA----T-A-ACAA---TCAA-T-TAACTTG-GG-TGTGAA-TGGGGCT-C-CAAGAGGGAGCACAGGTAGATAT-ACC-T--T--G-C----ATAC---------C-TG-------TA----caatataagtgtacacatatctgatttataccatg
gi|16 : TAGAGGT-ACC-TG-T--G-T----T-AT---------C-TG-------TA----GT-----------GT-A-GA-------------------G-G-------A---A---ACAGAG-----------AA--A-TCTTC-A-A-A--ATGTATTTA-GAG-TGC-ACAAC---G---TG--Tttcactt
gi|17 : ta-ATGGCTACTC--CT-AAAA----T-A-ACAA---TCAA-TCTAATT---GG-TGTGAA-AGGGGCT-CTCTAGAGGGAACCCA-GTGGACTT-A-C-TG-T--G-T----TTAC---------C-TG-------Ttgcaatattta
gi|18 : GA-ATGGCTACTTGCTT-AAAA----T-A-AC-A---TCAA---TAACTTG-GGCCGTGA
gi|2 : gtgccaCTGA-ACGGCTACTTACCT-ACAC----C-A-ACAT---TTAA-T-TAACTAA-GG-TGCGAA-CGAACGT-CTAAAGAGGGAACGC----AGAGTT-ACC-TG-T--G-A----TTAC---------C-TG-------TA----GT-----------GC-A-TAT----T-------------G-T-------A---T---
gi|2 : tcc-T--G-T----TTGC---------C-TA-------CA----GT-----------GT-A-AAT--G-------------------------A---A---GCAGAA-----------AG--A-TCTTC-A-C-A--GTTTATTCA-GTA-TAT-GCAG----T---TG--TATC----TGCTTTCATAAA-TCATTA--C--A-ATAA----C----ATA-AC-T-G--ATT--------TAC--------ACC-A-CGAA-CTTCATTCAAA-ATGTCA--GA----T-A-AAGC-GTTCAAATTCTACTAAATA-AATAAtttaaaaggtactttctgtttgcctacagtgtaaatgaagcagaaagatcttcacagtttattcagtatatgcagttgtatctgctttcataaatcattacaataacataactgatttacaccacgaacttcattcaaaatgtcagataaagcgttcaaattctactaaataaataacatagaactatattaataa
gi|3 : tccctgaacggctacttacctacaccaacatttaattaactaaggtgcgaacgaacgtctaaagagggaacgcagagttacctgtgattacctgtagtgcatattgtattttaaaaggtactttcCCGA-ATGGTTACTCGCCT-AAAA----C-A-ACAGCAGTCAT-T-TAATTTG-GG-TGTGA---GCCCCT-CTCAAGAGGGAACGCAGGTAGACAT-ACC-TG-T--G-T----TTAC---------C-TG-------CA----GT-----------AT-G-CAT--A-CTATTATTATGAAGG-T-------ACCGT---GCAGAA-----------AACAA-GCTTC-A-C-A--TTTTATTCA-GAA-TAC-ACAAC---T---TG--TATT----TATTCTCATTCA-TT-TTA--C--ATGTAA----CT-TCATA-AC-T-A--ATTTATACCATCAATGATAATGAAATG-AAAA-CATTG-TCAAA-ATT--A--TA----T-A-AAA--ATT--GGTTTGACT--ATATAATGAcatagaactatattaataa
gi|4 : gtatgcGA-ATGGCCATCCAATT-AAAA----T-ATACAA---TCAA-T-TCCGTTGAGG-TGTGAA-AGGG-CT-CTCAAGAGGGAAAGCAGGT--ACTT-CCC-TA-T--G-T----TTAC---------C-TGT------TA----GTA----------AT-A-CAG--ATT-------------A-T-------A---T---GGAGAAAGTGCAAGAACAA--A-TCTTC-A-CTATTTTTTATTCA-GAATTAT-G-AAC---T---GG----TT----TA-TTTCATATA--T-TTA--C--ATGTGA----CT-ATATA-ACTT-A--ATT--------CAA--------AAA-GTAAAA-CATTG-TTAAAGATA--AATTAAAATT-AGAAA--ATT--AGTTTAACTA-ATATAATGAgaagtagtgcttt
gi|5 : gttcccaCGA-ACGTCTGCTGGCCT-AAAC----C-A-ACG----TC-----TAACT-----------A-A-------CTCAAGGGGGAACACAGATAGAGTT-ACC-TG-T--G-T----TTAC---------C-TG--------A--------------------A-CAT--A---------------G-T-------A---T---Gtaagtagtgatttt
gi|5 : ctgttccctT-ACC-TA-T--G-T----TTAC---------C-TG-------TACATAAT-----------GT-A-AAT--A-------------------------A---A---GCAGAA-----------AA--AATCTTC-G-C-A--TTTTATTGA-GTA-TAC-GCAAC---T---TG--TATTTTA-TATTTTCATAAA-Tatagtacctagtattagatactggtacctatgttcagngtacctagtattagatactggtacctatgtttacctgtacataatgtaaataaagcagaaaaaatcttcgcattttattgagtatacgcaacttgtattttatattttcataaatcattagatttataccatc
gi|6 : ctgttccctcgaacgtctgctggcctaaaccaacgtctaactaactcaagggggaacacagatagagttacctgtgtttacctgaacatagtatgatagtacctagtattagatactggtacctatgttcagngtacctagtattagatactggCCGA-ACGGCTACTTACCT-AAAC----C-A-ACAT---CTAA-T-CAAC-----A-AGTGAA-AGGGGCT-CTCAAG--------------GAGTT-ATC-TG-T--G-T----TTTC---------C-TG-------TA----GT-----------GT-A-CGT--A---------------G-T-------A---T---CTAGcattagatttataccatc
gi|6 : caaggtagtatgtttcgtaggtcgtggcagctgtattcTAGAGT--ACA-TG-T--G-T----T-AC---------T-TT-------TA----GT-----------AA-A-AAA--A---------------------------------GGAGGG-----------AA--T-TCTGC-A-T-A--TCTTATTCA-GTA-CAC-Gtattatagagtacatgtgttacttttagtaaaaaaaggagggaattctgcatatcttattcagtacacggcatgattatgaatacaagttgcgtatactgaataaaatcagatatacctattggtgg
gi|6 : caaggtagtatgtttcgtaggtcgtggcagctgtattcccgaacggctacttacctaaaccaacatctaatcaacaagtgaaaggggctctcaaggagttatctgtgttttcctgtagtgtacgtagtatctagtatta-A--TTTTATTCA-GTA-TAC-GCAAC---T---TG--TATT----CATAATCATgcatgattatgaatacaagttgcgtatactgaataaaatcagatatacctattggtgg
gi|7 : caaggtagtatgtttcgtaggtcgtggcagctgtattcccgaacggctacttacctaaaccaacatctaatcaacaagtgaaaggggctctcaaggagttatctgtgttttcctgtagtgtacgtagtatctagtattatagagtacatgtgttacttttagtaaaaaaaggagggaattctgcatatcttattcagtacacggc-ACGGCTACTGGCCT-AAAC----C-A-ACA----TCAAAT-TA--TTA-AGCTGTGAA-AGGGGCT-CTCAAGGGGAAAC--------AGTT-ACC-TG-C--G-C----TTAC---------C-AG-------TA----GT-----------GT-T-CAT--A-T---------------T-------A---C---CTAGAA-----------cagatatacctattggtgg
gi|7 : ggctgttttccctcTAGAGGT-ATC-TG-T--G-TG---TTAC---------T-TG-------TA----GT-----------GT-A-AAT--A-------------------------A---A---GCAGAA-----------AA--A-TCTCT-A-C-A--TTTTATTCA-GTA-TAT-GCAGC---T---TG--TATT----TATTTTCATAAA-Tctatagaggtatctgtgtgttacttgtagtgtaaataaagcagaaaaatctctacattttattcagtatatgcagcttgtatttattttcataaatcactatatttataccaccatcaatgcacacaataaaggaaa
gi|8 : ggctgttttccctcacggctactggcctaaaccaacatcaaattattaagctgtgaaaggggctctcaaggggaaacagttacctgcgcttaccagtagtgttcatattacctagaactaCTGA-ATGCCCACTCCCTT-AAAA----T-A-TCAA---TCAA-T-TAACTTG-GG-TGCGAT-AGGGGTT-CCCAAGAGAGAACGCAGGTAGACTT-ACC-TG-T--G-T----TTAC---------G-TG-------TA----GT-----------TT-G-CAT--A-TTA-----------T-T-------A---T---GGAGAA-----------GA--A-TCTTC-A-C-T--TTTTATTCG-GAA-TAC-GCAAC---T---TG--TGTT----TA--TTCATATA-TT-TTA--C--ACGTAA----CT-ATATA-AC-T-A--ATT--------CAA--------AAA-G-TAAA-CATTG-TTAAA-ATA--A--TA----T-A-AAA--ATT--AGTTTGACTATATATAATAAcactatatttataccaccatcaatgcacacaataaaggaaa
gi|9 : CCGACATGCCCACTCGCTG-AAAAATATC-A-ACAA---T----T-TAACTTG-GG-TGTGAT-AAGGGTT-CCCAAGAGGGAACGC-GGTAGACTT-ACC-TGCT--G-T----TTAC---------G-TG-------TA----GT-----------TT-GCCAT--ATT-------------GTT-------A---T---GGAG-A-----------AG--A-TCTTCAA-C-T--TTTTATTCG-GAA-TACGGCAAC---T---TG--T-TT----T-TTTTCATATATTT-TTA--C--ACGTAA----CT-ATATA-AC-TAA--ATT--------C-A--------AAA-G-TAAACCCCTG-TTAAA-ATA--A--TA----TAA-AAA--ATT--AAT
Alignments
lowQualScore : 1111 11111111111 55555555555555555555555555555555555 1111 11111 1111 4444444444444444444 1111 11
lowQualScore : 3 22 3 6666 3 3 1111 6 3 555 5 3 00 2 4 1 33 2 2 1 22 1 6666 777777777 1 8888888 4444 22222222222 2 8888888 88888888888888888888888888888888888 3 3 44 6 3 3 3 444 3 1 3 3 2 8888888 44 0 2222 22 1 3 5 11111 1 2222 5 5 666 77 4444444444444444444 5 66 999 5 5 888 77 2222 5 5 33 77 7 3
lowQualScore : . .. . .... . . .... . . ... . . .. . . . .. . . . .. . .... ......... . ....... .... ........... . ....... ................................... . . .. . . . . ... . . . . . ....... .. . .... .. . . . ..... . .... . . ... .. ................... . .. ... . . ... .. .... . . .. .. . .
lowQualScore : 1 11 1 5555 1 1 1111 2 1 555 7 1 66 9 6 4 22 0 0 9 66 9 0000 666666666 9 1111111 2222 11111111111 1 3333333 22222222222222222222222222222222222 1 1 66 7 3 3 1 888 1 0 1 1 8 5555555 22 3 9999 88 0 6 7 66666 7 1111 7 7 777 99 0000000000000000000 7 77 444 7 7 333 99 1111 7 7 66 99 5 2
consensus : CCGA-ACGGCTACTCGCCT-AAAA----C-A-ACAA---TCAA-T-TAACTTG-GG-TGTGAA-AGGGGCT-CTCAAGAGGGAACGCAGGTAGAGNT-ACC-TG-T--G-T----TTAC---------C-TG-------TA----GT-----------GT-A-C-----ATA---------------G-T-------A-----T---GC-AGAA-AA--A-TCTTC-A-C-A--TTTTATTCA-GNA-TAC-GCAAC---T---TG--TATT----TATTTTCATANA-TT-TTA--C--ACGTAA----CT-ATATA-AC-T-A--ATT--------CAA--------AAA-G-NAAA-CNTTG-TCAAA-ATG--A--TA----T-A-AAA--ATT--AGTTTGACTATATATAATGA
Reference ( family-912 ) : CCGA-ACGGCTACTCGCCT-AAAA----C-A-ACAA---TCAA-T-TAACTTG-GG-TGTGAA-AGGGGCT-CTCAAGAGGGAACGCAGGTAGAGTT-ACC-TG-T--G-T----TTAC---------C-TG-------TA----GT-----------GT-A-C-----ATA-T-------------G-T-------A-----T---GC-AGAA-AA--A-TCTTC-A-C-A--TTTTATTCA-GNA-TAC-GCAAC---T---TG--TATT----TATTTTCATANA-TT-TTA--C--ACGTAA----CT-ATATA-AC-T-A--ATT--------CAA--------AAA-G-NAAA-CNTTG-TCAAA-ATG--A--TA----T-A-AAA--ATT--AGTTTGACTATATATAATGA
gi|1 : CTTA-GG-TGCGAA-AGGGG-T-CTCAAGGGGGAGCACAGGTAGA---------G-T--A-T----TTAT---------C-TG-------TA----GT-----------GT-A-T-----ATA---------------G-T-------A-----T---
gi|1 : caacatagcacaagcttcgcatgttgggatggctgtatccagataggtttaccagcctaaacTAGAGGT-ACC-TG-T--G-C----T-AT---------C-TA-------TA----GT-----------GT-A-A-----AGA-A-------------GAC-------A-----G---AC-AAAA-AA--A-TCTTC-A-C-A--TTTTATTCA-GAA-TAC-AAAAC---TACATAAATATT----TATTTTCATATA-TT-TGA--AGAACATAA----CTGATTTATAC-C-ATTACT--------GAA--------AAA-G-GAAA-GCTTG-TCAAT--TG--A--TA----T-A-AAAAAATT--AGTTTGACTATtatagaggtacctgtgctatctatagtgtaaagaagacagacaaaaaaatcttcacattttattcagaatacaaaactacataaatatttattttcatatatttgaagaacataactgatttataccattactgaaaaaggaaagcttgtcaattgatataaaaaaattagtttgactatgatgactagtgcatttttcccctaatata
gi|10 : caacatagcacaagcttcgcatgttgggatggctgtatccagataggtttaccagcctaaaccttaggtgcgaaaggggtctcaagggggagcacaggtagagtatttatctgtagtgtatatagtattaAGAGGT-ACCGTG-T--G-T----TTAT---------C-TG-------T-----GT-----------GT-A-G-----A-A-G-------------G-A-------A---------AC-AGAG-AC--A-TCTTC-AAC-A--ATGGATTTA-GAG-TGC-ATAACGTCT---TG--CAAT----T--TTTTGTATA-TT-TTAAGT--ACATAAAGTGTT-ACACA-AT-C-A----T--------CAATAAGA---AAA-G-GAAA-----G-ACACA-ATG--A--TG----T-A-AAA--ATT--AG-TTGACCATATAgatgactagtgcatttttcccctaatata
gi|11 : atagagtttatttgtattttatatagtgttaGGGGTT-CTCAAGGGGGAACACAGAT-GAGTT-ACC-TG-T--G-T----TTACTGAACTAGTC-TGATATACCTA----GTATTAGATTACGGT-A-C-----CTA-T-------------G-TTCAGTGAA-----TAAAGC-AGAA-AA--A-TCTTC-G-C-A---TTTATTGATGTA-TAC-G-AACT--T---TG--TATTTTTATATTTTCATAAA-Tatggtggactt
gi|12 : -ACGTCTACTGGCAA-AGAA----CCA-GCAA---TCAAAT-TAACATA-AG-TGTGAAGACGGACTACTT--GGAGGAACATAGGTAGAGTTAATA-TG-T--GTT----TTAC---------CAAG-------TA----GT-----------GTCA-C-----ATA-cattagatttataccattac
gi|13 : tgatCCGA-ATGGCTACTGACCT-AAAA----C-A-ACAT---TCGG-T-TAACTTA-GT-AGTAAA-AAGGGCT-CTTAAGAGGGGACTCAGGTAGAGAT-ACC-TG-TACG-TGTAATTAC---------C-TG-------TA----GT-----------GT-A-C-----ATA-aatgtgatagaggtactgcgttttacctaagttgtaaaataagcagaaaatct
gi|14 : tgtttcAGGT-ACC-CG-T--G-T----CTAC---------C-TA-------TA----AT-----------GT-A-A-----AGA-------------------------A-----A---GC-AGAA-AA--AATCTTC-A------TTTTATTCA-GTA------------------------T----TATTTCCATAAA-Tacagtgcagtat
gi|15 : CGA-ATGGCTATTCGCTTGAAAA----T-A-ACAA---TCAA-T-TAACTTG-GG-TGTGAA-TGGGGCT-C-CAAGAGGGAGCACAGGTAGATAT-ACC-T--T--G-C----ATAC---------C-TG-------TA----caatataagtgtacacatatctgatttataccatg
gi|16 : TAGAGGT-ACC-TG-T--G-T----T-AT---------C-TG-------TA----GT-----------GT-A-G-----A-----------------G-G-------A-----A---AC-AGAG-AA--A-TCTTC-A-A-A--ATGTATTTA-GAG-TGC-ACAAC---G---TG--Tttcactt
gi|17 : ta-ATGGCTACTC--CT-AAAA----T-A-ACAA---TCAA-TCTAATT---GG-TGTGAA-AGGGGCT-CTCTAGAGGGAACCCA-GTGGACTT-A-C-TG-T--G-T----TTAC---------C-TG-------Ttgcaatattta
gi|18 : GA-ATGGCTACTTGCTT-AAAA----T-A-AC-A---TCAA---TAACTTG-GGCCGTGA
gi|2 : gtgccaCTGA-ACGGCTACTTACCT-ACAC----C-A-ACAT---TTAA-T-TAACTAA-GG-TGCGAA-CGAACGT-CTAAAGAGGGAACGC----AGAGTT-ACC-TG-T--G-A----TTAC---------C-TG-------TA----GT-----------GC-A-T-----AT--T-------------G-T-------A-----T---
gi|2 : tcc-T--G-T----TTGC---------C-TA-------CA----GT-----------GT-A-A-----ATG-------------------------A-----A---GC-AGAA-AG--A-TCTTC-A-C-A--GTTTATTCA-GTA-TAT-GCAG----T---TG--TATC----TGCTTTCATAAA-TCATTA--C--A-ATAA----C----ATA-AC-T-G--ATT--------TAC--------ACC-A-CGAA-CTTCATTCAAA-ATGTCA--GA----T-A-AAGC-GTTCAAATTCTACTAAATA-AATAAtttaaaaggtactttctgtttgcctacagtgtaaatgaagcagaaagatcttcacagtttattcagtatatgcagttgtatctgctttcataaatcattacaataacataactgatttacaccacgaacttcattcaaaatgtcagataaagcgttcaaattctactaaataaataacatagaactatattaataa
gi|3 : tccctgaacggctacttacctacaccaacatttaattaactaaggtgcgaacgaacgtctaaagagggaacgcagagttacctgtgattacctgtagtgcatattgtattttaaaaggtactttcCCGA-ATGGTTACTCGCCT-AAAA----C-A-ACAGCAGTCAT-T-TAATTTG-GG-TGTGA---GCCCCT-CTCAAGAGGGAACGCAGGTAGACAT-ACC-TG-T--G-T----TTAC---------C-TG-------CA----GT-----------AT-G-C-----ATA-CTATTATTATGAAGG-T-------ACCG--T---GC-AGAA-AACAA-GCTTC-A-C-A--TTTTATTCA-GAA-TAC-ACAAC---T---TG--TATT----TATTCTCATTCA-TT-TTA--C--ATGTAA----CT-TCATA-AC-T-A--ATTTATACCATCAATGATAATGAAATG-AAAA-CATTG-TCAAA-ATT--A--TA----T-A-AAA--ATT--GGTTTGACT--ATATAATGAcatagaactatattaataa
gi|4 : gtatgcGA-ATGGCCATCCAATT-AAAA----T-ATACAA---TCAA-T-TCCGTTGAGG-TGTGAA-AGGG-CT-CTCAAGAGGGAAAGCAGGT--ACTT-CCC-TA-T--G-T----TTAC---------C-TGT------TA----GTA----------AT-A-CAGATTATA-T-------------G-G-------AGAAAGT---GCAAGAACAA--A-TCTTC-A-CTATTTTTTATTCA-GAATTAT-G-AAC---T---GG----TT----TA-TTTCATATA--T-TTA--C--ATGTGA----CT-ATATA-ACTT-A--ATT--------CAA--------AAA-GTAAAA-CATTG-TTAAAGATA--AATTAAAATT-AGAAA--ATT--AGTTTAACTA-ATATAATGAgaagtagtgcttt
gi|5 : gttcccaCGA-ACGTCTGCTGGCCT-AAAC----C-A-ACG----TC-----TAACT-----------A-A-------CTCAAGGGGGAACACAGATAGAGTT-ACC-TG-T--G-T----TTAC---------C-TG--------A--------------------A-C-----ATA---------------G-T-------A-----T---Gtaagtagtgatttt
gi|5 : ctgttccctT-ACC-TA-T--G-T----TTAC---------C-TG-------TACATAAT-----------GT-A-A-----ATA-------------------------A-----A---GC-AGAA-AA--AATCTTC-G-C-A--TTTTATTGA-GTA-TAC-GCAAC---T---TG--TATTTTA-TATTTTCATAAA-Tatagtacctagtattagatactggtacctatgttcagngtacctagtattagatactggtacctatgtttacctgtacataatgtaaataaagcagaaaaaatcttcgcattttattgagtatacgcaacttgtattttatattttcataaatcattagatttataccatc
gi|6 : ctgttccctcgaacgtctgctggcctaaaccaacgtctaactaactcaagggggaacacagatagagttacctgtgtttacctgaacatagtatgatagtacctagtattagatactggtacctatgttcagngtacctagtattagatactggCCGA-ACGGCTACTTACCT-AAAC----C-A-ACAT---CTAA-T-CAAC-----A-AGTGAA-AGGGGCT-CTCAAG--------------GAGTT-ATC-TG-T--G-T----TTTC---------C-TG-------TA----GT-----------GT-A-C-----GTA---------------G-T-------A-----T---cattagatttataccatc
gi|6 : caaggtagtatgtttcgtaggtcgtggcagctgtattc-A--TTTTATTCA-GTA-TAC-GCAAC---T---TG--TATT----CATAATCATctagtattatagagtacatgtgttacttttagtaaaaaaaggagggaattctgcatatcttattcagtacacggcatgattatgaatacaagttgcgtatactgaataaaatcagatatacctattggtgg
gi|7 : caaggtagtatgtttcgtaggtcgtggcagctgtattcccgaacggctacttacctaaaccaacatctaatcaacaagtgaaaggggctctcaaggagttatctgtgttttcctgtagtgtacgtagtatctagtattatagagtacatgtgttacttttagtaaaaaaaggagggaattctgcatatcttattcagtacacggc-ACGGCTACTGGCCT-AAAC----C-A-ACA----TCAAAT-TA--TTA-AGCTGTGAA-AGGGGCT-CTCAAGGGGAAAC--------AGTT-ACC-TG-C--G-C----TTAC---------C-AG-------TA----GT-----------GT-T-C-----ATA-T---------------T-------A-----C---CT-AGAA-cagatatacctattggtgg
gi|7 : ggctgttttccctcTAGAGGT-ATC-TG-T--G-TG---TTAC---------T-TG-------TA----GT-----------GT-A-A-----ATA-------------------------A-----A---GC-AGAA-AA--A-TCTCT-A-C-A--TTTTATTCA-GTA-TAT-GCAGC---T---TG--TATT----TATTTTCATAAA-Tctatagaggtatctgtgtgttacttgtagtgtaaataaagcagaaaaatctctacattttattcagtatatgcagcttgtatttattttcataaatcactatatttataccaccatcaatgcacacaataaaggaaa
gi|8 : ggctgttttccctcacggctactggcctaaaccaacatcaaattattaagctgtgaaaggggctctcaaggggaaacagttacctgcgcttaccagtagtgttcatattacctagaactaCTGA-ATGCCCACTCCCTT-AAAA----T-A-TCAA---TCAA-T-TAACTTG-GG-TGCGAT-AGGGGTT-CCCAAGAGAGAACGCAGGTAGACTT-ACC-TG-T--G-T----TTAC---------G-TG-------TA----GT-----------TT-G-C-----ATA-TTA-----------T-T-------A-----T---GG-AGAA-GA--A-TCTTC-A-C-T--TTTTATTCG-GAA-TAC-GCAAC---T---TG--TGTT----TA--TTCATATA-TT-TTA--C--ACGTAA----CT-ATATA-AC-T-A--ATT--------CAA--------AAA-G-TAAA-CATTG-TTAAA-ATA--A--TA----T-A-AAA--ATT--AGTTTGACTATATATAATAAcactatatttataccaccatcaatgcacacaataaaggaaa
gi|9 : CCGACATGCCCACTCGCTG-AAAAATATC-A-ACAA---T----T-TAACTTG-GG-TGTGAT-AAGGGTT-CCCAAGAGGGAACGC-GGTAGACTT-ACC-TGCT--G-T----TTAC---------G-TG-------TA----GT-----------TT-GCC-----ATATT-------------GTT-------A-----T---GG-AG-A-AG--A-TCTTCAA-C-T--TTTTATTCG-GAA-TACGGCAAC---T---TG--T-TT----T-TTTTCATATATTT-TTA--C--ACGTAA----CT-ATATA-AC-TAA--ATT--------C-A--------AAA-G-TAAACCCCTG-TTAAA-ATA--A--TA----TAA-AAA--ATT--AAT
Alignments
lowQualScore : 1111 3333333333333333333333333 11111111111 1111 11 1111 4444444444444444444 1111111
lowQualScore : 3 22 3 6666 3 3 1111 6 3 555 5 3 00 2 4 1 3 1 1 3 22 1 5555 1 444 3333 44444 1 1 55 1 1111111111111111111111111 33 33333333333 44 6 3 3 2 33 2 1 2 2 2 8888888 44 0 2222 0 1 3 5 55 1 2222 5 5 666 77 4444444444444444444 5 66 999 5 5 888 77 6666666 5 5 77 7 3
lowQualScore : . .. . .... . . .... . . ... . . .. . . . . . . . .. . .... . ... .... ..... . . .. . ......................... .. ........... .. . . . . .. . . . . . ....... .. . .... . . . . .. . .... . . ... .. ................... . .. ... . . ... .. ....... . . .. . .
lowQualScore : 1 11 1 5555 1 1 1111 2 1 555 7 1 66 9 6 4 3 7 7 5 44 7 4444 7 888 9999 88888 9 9 33 5 2222222222222222222222222 44 66666666666 22 2 1 1 9 99 9 0 9 9 8 5555555 22 3 9999 4 0 6 7 77 7 1111 7 7 777 99 0000000000000000000 7 77 444 7 7 333 99 7777777 7 7 99 5 2
consensus : CCGA-ACGGCTACTCGCCT-AAAA----C-A-ACAA---TCAA-T-TAACTTG-GG-TGTGAA-AGGGGCT-CTCAAGAGGGAACGCAGGTAGAGNT-ACC-TG-T--G-T----TTACC-TG---TA----G-----T-GT-A-CATA--------------G-TA---N---G--CAGAA-----------AA--A-TCTTC-A-C-A--TTTTATTCA-GNA-TAC-GCAAC---T---T--GTATT----TATTTTCATANA-TT-TTA--CACGTAA----CT-ATATA-AC-T-A--ATT--------CAA--------AAA-G-NAAA-CNTTG-TCAAA-ATG--A--TA----T--A-AAA-ATT--AGTTTGACTATATATAATGA
Reference ( family-912 ) : CCGA-ACGGCTACTCGCCT-AAAA----C-A-ACAA---TCAA-T-TAACTTG-GG-TGTGAA-AGGGGCT-CTCAAGAGGGAACGCAGGTAGAGNT-ACC-TG-T--G-T----TTACC-TG---TA----G-----T-GT-A-CATA--------------G-TA---T---G--CAGAA-----------AA--A-TCTTC-A-C-A--TTTTATTCA-GNA-TAC-GCAAC---T---T--GTATT----TATTTTCATANA-TT-TTA--CACGTAA----CT-ATATA-AC-T-A--ATT--------CAA--------AAA-G-NAAA-CNTTG-TCAAA-ATG--A--TA----T--A-AAA-ATT--AGTTTGACTATATATAATGA
gi|1 : CTTA-GG-TGCGAA-AGGGG-T-CTCAAGGGGGAGCACAGGTAGA---------G-T--A-T----TTATC-TG---TA----G-----T-GT-A-TATA--------------G-TA---T---
gi|1 : caacatagcacaagcttcgcatgttgggatggctgtatccagataggtttaccagcctaaacTAGAGGT-ACC-TG-T--G-C----T-ATC-TA---TA----G-----T-GT-A-AAGA--------------A-GA---C---AGACAAAA-----------AA--A-TCTTC-A-C-A--TTTTATTCA-GAA-TAC-AAAAC---TACATAAATATT----TATTTTCATATA-TT-TGAAGAACATAA----CTGATTTATAC-C-ATTACT--------GAA--------AAA-G-GAAA-GCTTG-TC-AA-TTG--A--TA----TAAA-AAA-ATT--AGTTTGACTATtatagaggtacctgtgctatctatagtgtaaagaagacagacaaaaaaatcttcacattttattcagaatacaaaactacataaatatttattttcatatatttgaagaacataactgatttataccattactgaaaaaggaaagcttgtcaattgatataaaaaaattagtttgactatgatgactagtgcatttttcccctaatata
gi|10 : caacatagcacaagcttcgcatgttgggatggctgtatccagataggtttaccagcctaaaccttaggtgcgaaaggggtctcaagggggagcacaggtagagtatttatctgtagtgtatatagtattaAGAGGT-ACCGTG-T--G-T----TTATC-TG---T-----G-----T-GT-A-GA-A--------------G-GA---A---A--CAGAG-----------AC--A-TCTTC-AAC-A--ATGGATTTA-GAG-TGC-ATAACGTCT---T--GCAAT----T--TTTTGTATA-TT-TTAAGTACATAAAGTGTT-ACACA-AT-C-A----T--------CAATAAGA---AAA-G-GAAA-----G-ACACA-ATG--A--TG----T--A-AAA-ATT--AG-TTGACCATATAgatgactagtgcatttttcccctaatata
gi|11 : atagagtttatttgtattttatatagtgttaGGGGTT-CTCAAGGGGGAACACAGAT-GAGTT-ACC-TG-T--G-T----TTA-C-TGAACTA----GTCTGAT-AT-A-CCTA--------------G-TA---T---atggtggactt
gi|11 : GGT-ACC-TA-T--G-T----TCA----------------------GT-G-AATA-----------------A---A---G--CAGAA-----------AA--A-TCTTC-G-C-A---TTTATTGATGTA-TAC-G-AACT--T---T--GTATTTTTATATTTTCATAAA-Ttagattacggtacctatgttcagtgaataaagcagaaaaatcttcgcatttattgatgtatacgaactttgtatttttatattttcataaatcattagatttataccattac
gi|12 : ggggttctcaagggggaacacagatgagttacctgtgtttactgaactagtctgatatacctagtattagattac-ACGTCTACTGGCAA-AGAA----CCA-GCAA---TCAAAT-TAACATA-AG-TGTGAAGACGGACTACTT--GGAGGAACATAGGTAGAGTTAATA-TG-T--GTT----TTACCAAG---TA----G-----T-GTCA-CATA--------------cattagatttataccattac
gi|13 : tgatCCGA-ATGGCTACTGACCT-AAAA----C-A-ACAT---TCGG-T-TAACTTA-GT-AGTAAA-AAGGGCT-CTTAAGAGGGGACTCAGGTAGAGAT-ACC-TG-TACG-TGTAATTACC-TG---TA----G-----T-GT-A-CATA--------------A-CAG--T---G--CAGaatgtgatagaggtactgcgttttacctaagttgtaaaataagcagaaaatct
gi|14 : tgtttcAGGT-ACC-CG-T--G-T----CTACC-TA---TA----A-----T-GT-A--A-A--------------G-AA---A---G--CAGAA-----------AA--AATCTTC-A------TTTTATTCA-GTA------------------------T----TATTTCCATAAA-Ttat
gi|15 : CGA-ATGGCTATTCGCTTGAAAA----T-A-ACAA---TCAA-T-TAACTTG-GG-TGTGAA-TGGGGCT-C-CAAGAGGGAGCACAGGTAGATAT-ACC-T--T--G-C----ATACC-TG---TA----caatataagtgtacacatatctgatttataccatg
gi|16 : TAGAGGT-ACC-TG-T--G-T----T-ATC-TG---TA----G-----T-GT-A-GA----------------G-GA---A---A--CAGAG-----------AA--A-TCTTC-A-A-A--ATGTATTTA-GAG-TGC-ACAAC---G---T--GTttcactt
gi|17 : ta-ATGGCTACTC--CT-AAAA----T-A-ACAA---TCAA-TCTAATT---GG-TGTGAA-AGGGGCT-CTCTAGAGGGAACCCA-GTGGACTT-A-C-TG-T--G-T----TTACC-TG---Ttgcaatattta
gi|18 : GA-ATGGCTACTTGCTT-AAAA----T-A-AC-A---TCAA---TAACTTG-GGCCGTGA
gi|2 : gtgccaCTGA-ACGGCTACTTACCT-ACAC----C-A-ACAT---TTAA-T-TAACTAA-GG-TGCGAA-CGAACGT-CTAAAGAGGGAACGC----AGAGTT-ACC-TG-T--G-A----TTACC-TG---TA----G-----T-GC-A-TATT--------------G-TA---T---
gi|2 : tccAAAGGT-ACT-TTCT--G-T----TTGCC-TA---CA----G-----T-GT-A-AATG-----------------A---A---G--CAGAA-----------AG--A-TCTTC-A-C-A--GTTTATTCA-GTA-TAT-GCAG----T---T--GTATC----TGCTTTCATAAA-TCATTA--CA-ATAA----C----ATA-AC-T-G--ATT--------TAC--------ACC-A-CGAA-CTTCATTCAAA-ATGTCA--GA----T--A-AAGCGTTCAAATTCTACTAAATA-AATAAtttaaaaggtactttctgtttgcctacagtgtaaatgaagcagaaagatcttcacagtttattcagtatatgcagttgtatctgctttcataaatcattacaataacataactgatttacaccacgaacttcattcaaaatgtcagataaagcgttcaaattctactaaataaataacatagaactatattaataa
gi|3 : tccctgaacggctacttacctacaccaacatttaattaactaaggtgcgaacgaacgtctaaagagggaacgcagagttacctgtgattacctgtagtgcatattgtattttaCCGA-ATGGTTACTCGCCT-AAAA----C-A-ACAGCAGTCAT-T-TAATTTG-GG-TGTGA---GCCCCT-CTCAAGAGGGAACGCAGGTAGACAT-ACC-TG-T--G-T----TTACC-TG---CA----G-----T-AT-G-CATACTATTATTATGAAGG-TACCGT---G--CAGAA-----------AACAA-GCTTC-A-C-A--TTTTATTCA-GAA-TAC-ACAAC---T---T--GTATT----TATTCTCATTCA-TT-TTA--CATGTAA----CT-TCATA-AC-T-A--ATTTATACCATCAATGATAATGAAATG-AAAA-CATTG-TCAAA-ATT--A--TA----T--A-AAA-ATT--GGTTTGACT--ATATAATGAcatagaactatattaataa
gi|4 : gtatgcGA-ATGGCCATCCAATT-AAAA----T-ATACAA---TCAA-T-TCCGTTGAGG-TGTGAA-AGGG-CT-CTCAAGAGGGAAAGCAGGT--ACTT-CCC-TA-T--G-T----TTACC-TGT--TA----G-----TAAT-A-CAGATT------------A-TA---T---G--GAGAAAGTGCAAGAACAA--A-TCTTC-A-CTATTTTTTATTCA-GAATTAT-G-AAC---T---G--G--TT----TA-TTTCATATA--T-TTA--CATGTGA----CT-ATATA-ACTT-A--ATT--------CAA--------AAA-GTAAAA-CATTG-TTAAAGATA--AATTAAAATT--AGAAA-ATT--AGTTTAACTA-ATATAATGAgaagtagtgcttt
gi|5 : gttcccaCGA-ACGTCTGCTGGCCT-AAAC----C-A-ACG----TC-----TAACT-----------A-A-------CTCAAGGGGGAACACAGATAGAGTT-ACC-TG-T--G-T----TTACC-TG----A---------------A-CATA--------------G-TA---T---G--taagtagtgatttt
gi|5 : ctgttccctGGT-ACC-TA-T--G-T----TTACC-TG---TACATAA-----T-GT-A-AATA-----------------A---A---G--CAGAA-----------AA--AATCTTC-G-C-A--TTTTATTGA-GTA-TAC-GCAAC---T---T--GTATTTTA-TATTTTCATAAA-Tatagtacctagtattagatactggtacctatgttcagngtacctagtattagatactggtacctatgtttacctgtacataatgtaaataaagcagaaaaaatcttcgcattttattgagtatacgcaacttgtattttatattttcataaatcattagatttataccatc
gi|6 : ctgttccctcgaacgtctgctggcctaaaccaacgtctaactaactcaagggggaacacagatagagttacctgtgtttacctgaacatagtatgatagtacctagtattagatactggtacctatgttcagngtacctagtattagatactCCGA-ACGGCTACTTACCT-AAAC----C-A-ACAT---CTAA-T-CAAC-----A-AGTGAA-AGGGGCT-CTCAAG--------------GAGTT-ATC-TG-T--G-T----TTTCC-TG---TA----G-----T-GT-A-CGTA--------------G-TA---T---cattagatttataccatc
gi|6 : caaggtagtatgtttcgtaggtcgtggcagctgtattcTAGAG-T-ACA-TG-T--G-T----T-ACT-TT---TA----G-----T-AA-A-AAAA--------------G----------G---AGGG-----------AA--T-TCTGC-A-T-A--TCTTATTCA-GTA-CAC-Gctagtattatagagtacatgtgttacttttagtaaaaaaaggagggaattctgcatatcttattcagtacacggcatgattatgaatacaagttgcgtatactgaataaaatcagatatacctattggtgg
gi|6 : caaggtagtatgtttcgtaggtcgtggcagctgtattcccgaacggctacttacctaaaccaacatctaatcaacaagtgaaaggggctctcaaggagttatctgtgttttcctgtagtgtacgtagtatctagtatta-A--TTTTATTCA-GTA-TAC-GCAAC---T---T--GTATT----CATAATCATgcatgattatgaatacaagttgcgtatactgaataaaatcagatatacctattggtgg
gi|7 : caaggtagtatgtttcgtaggtcgtggcagctgtattcccgaacggctacttacctaaaccaacatctaatcaacaagtgaaaggggctctcaaggagttatctgtgttttcctgtagtgtacgtagtatctagtattatagagtacatgtgttacttttagtaaaaaaaggagggaattctgcatatcttattcagtacacggc-ACGGCTACTGGCCT-AAAC----C-A-ACA----TCAAAT-TA--TTA-AGCTGTGAA-AGGGGCT-CTCAAGGGGAAAC--------AGTT-ACC-TG-C--G-C----TTACC-AG---TA----G-----T-GT-T-CATA--------------T-TA---C---C--TAGAA-----------cagatatacctattggtgg
gi|7 : ggctgttttccctcTAGAGGT-ATC-TG-T--G-TG---TTACT-TG---TA----G-----T-GT-A-AATA-----------------A---A---G--CAGAA-----------AA--A-TCTCT-A-C-A--TTTTATTCA-GTA-TAT-GCAGC---T---T--GTATT----TATTTTCATAAA-Tctatagaggtatctgtgtgttacttgtagtgtaaataaagcagaaaaatctctacattttattcagtatatgcagcttgtatttattttcataaatcactatatttataccaccatcaatgcacacaataaaggaaa
gi|8 : ggctgttttccctcacggctactggcctaaaccaacatcaaattattaagctgtgaaaggggctctcaaggggaaacagttacctgcgcttaccagtagtgttcatattacctagaactaCTGA-ATGCCCACTCCCTT-AAAA----T-A-TCAA---TCAA-T-TAACTTG-GG-TGCGAT-AGGGGTT-CCCAAGAGAGAACGCAGGTAGACTT-ACC-TG-T--G-T----TTACG-TG---TA----G-----T-TT-G-CATA--------------T-TA---TTATG--GAGAA-----------GA--A-TCTTC-A-C-T--TTTTATTCG-GAA-TAC-GCAAC---T---T--GTGTT----TATT--CATATA-TT-TTA--CACGTAA----CT-ATATA-AC-T-A--ATT--------CAA--------AAA-G-TAAA-CATTG-TTAAA-ATA--A--TA----T--A-AAA-ATT--AGTTTGACTATATATAATAAcactatatttataccaccatcaatgcacacaataaaggaaa
gi|9 : CCGACATGCCCACTCGCTG-AAAAATATC-A-ACAA---T----T-TAACTTG-GG-TGTGAT-AAGGGTT-CCCAAGAGGGAACGC-GGTAGACTT-ACC-TGCT--G-T----TTACG-TG---TA----G-----T-TT-GCCATATT------------GTTA---T---G--GAG-A-----------AG--A-TCTTCAA-C-T--TTTTATTCG-GAA-TACGGCAAC---T---T--GT-TT----T-TTTTCATATATTT-TTA--CACGTAA----CT-ATATA-AC-TAA--ATT--------C-A--------AAA-G-TAAACCCCTG-TTAAA-ATA--A--TA----TA-A-AAA-ATT--AAT
Alignments
lowQualScore : 1111 333333333333333333333333 11111111111 1111 11 1111 3333333333333333333 1111 1111111
lowQualScore : 3 22 3 6666 3 3 1111 6 3 555 5 3 00 2 4 1 3 1 1 3 22 1 5555 1 1 8888 3333 44444 1 1 77 3 000000000000000000000000 55555555555 33 5 2 333 444 2 2 1 2 555 777 555555 7777 1 3 3 5 33 2 5 0000 55 5 5 5 66 6666666666666666666 1111 999 5 5 888 77 6666666 5 5 77 7 3
lowQualScore : . .. . .... . . .... . . ... . . .. . . . . . . . .. . .... . . .... .... ..... . . .. . ........................ ........... .. . . ... ... . . . . ... ... ...... .... . . . . .. . . .... .. . . . .. ................... .... ... . . ... .. ....... . . .. . .
lowQualScore : 1 11 1 5555 1 1 1111 2 1 555 7 1 66 9 6 4 2 7 7 3 33 7 2222 7 7 1111 7777 55555 8 8 66 3 222222222222222222222222 33333333333 77 3 9 222 000 7 7 0 7 666 999 222222 3333 0 3 3 0 88 2 0 6666 44 0 0 0 99 9999999999999999999 0000 111 7 7 333 99 7777777 7 7 99 5 2
consensus : CCGA-ACGGCTACTCGCCT-AAAA----C-A-ACAA---TCAA-T-TAACTTG-GG-TGTGAA-AGGGGCT-CTCAAGAGGGAACGCAGGTAGAGNT-ACC-TG-T--G-T----TT-ACC-TG----TA----G-----T-GT-A-NATA--------------G--TA-N---GCAGAA-----------AA--A-TCTTC-A-C-A--TTT-TATTCA-GNA-TAC-GCAAC---T---T--GTATT----TATTTTCATANA-T-T-TTA--CACGTA-A----CT-ATATA-AC-T-A--ATT--------CAA--------AAA-G-NAAA-CNTTG-TCAAA-ATG--A--TA----T--A-AAA-ATT--AGTTTGACTATATATAATGA
Reference ( family-912 ) : CCGA-ACGGCTACTCGCCT-AAAA----C-A-ACAA---TCAA-T-TAACTTG-GG-TGTGAA-AGGGGCT-CTCAAGAGGGAACGCAGGTAGAGNT-ACC-TG-T--G-T----TT-ACC-TG----TA----G-----T-GT-A-CATA--------------G--TA-N---GCAGAA-----------AA--A-TCTTC-A-C-A--TTT-TATTCA-GNA-TAC-GCAAC---T---T--GTATT----TATTTTCATANA-T-T-TTA--CACGTA-A----CT-ATATA-AC-T-A--ATT--------CAA--------AAA-G-NAAA-CNTTG-TCAAA-ATG--A--TA----T--A-AAA-ATT--AGTTTGACTATATATAATGA
gi|1 : CTTA-GG-TGCGAA-AGGGG-T-CTCAAGGGGGAGCACAGGTAGA---------G-T--A-T----TT-ATC-TG----TA----G-----T-GT-A-TATA--------------G--TA-
gi|1 : caacatagcacaagcttcgcatgttgggatggctgtatccagataggtttaccagcctaaacTAGAGGT-ACC-TG-T--G-C----T--ATC-TA----TA----G-----T-GT-A-AAGA--------------AGACA-G---ACAAAA-----------AA--A-TCTTC-A-C-A--TTT-TATTCA-GAA-TAC-AAAAC---TACATAAATATT----TATTTTCATATA-T-T-TGAAGAACATA-A----CTGATTTATAC-C-ATTACT--------GAA--------AAA-G-GAAA-GCTTG-TC-AA-TTG--A--TA----TAAA-AAA-ATT--AGTTTGACTATttatagaggtacctgtgctatctatagtgtaaagaagacagacaaaaaaatcttcacattttattcagaatacaaaactacataaatatttattttcatatatttgaagaacataactgatttataccattactgaaaaaggaaagcttgtcaattgatataaaaaaattagtttgactatgatgactagtgcatttttcccctaatata
gi|10 : caacatagcacaagcttcgcatgttgggatggctgtatccagataggtttaccagcctaaaccttaggtgcgaaaggggtctcaagggggagcacaggtagagtatttatctgtagtgtatatagtattaAGAGGT-ACCGTG-T--G-T----TT-ATC-TG----T-----G-----T-GT-A-GA-A--------------G--GA-A---ACAGAG-----------AC--A-TCTTC-AAC-A--ATG-GATTTA-GAG-TGC-ATAACGTCT---T--GCAAT----T--TTTTGTATA-T-T-TTAAGTACATA-AAGTGTT-ACACA-AT-C-A----T--------CAATAAGA---AAA-G-GAAA-----G-ACACA-ATG--A--TG----T--A-AAA-ATT--AG-TTGACCATATAgatgactagtgcatttttcccctaatata
gi|11 : atagagtttatttgtattttatatagtgttaGGGGTT-CTCAAGGGGGAACACAGAT-GAGTT-ACC-TG-T--G-T----TT-A-C-TGAAC-TA----GTCTGAT-AT-A-CCTA--------------G--TA-atggtggactt
gi|11 : GGT-ACC-TA-T--G-T----TC-A-----------------------GT-G-AATA------------------A-A---GCAGAA-----------AA--A-TCTTC-G-C-A---TT-TATTGATGTA-TAC-G-AACT--T---T--GTATTTTTATATTTTCATAAA-T-ttagattacggtacctatgttcagtgaataaagcagaaaaatcttcgcatttattgatgtatacgaactttgtatttttatattttcataaatcattagatttataccattac
gi|12 : ggggttctcaagggggaacacagatgagttacctgtgtttactgaactagtctgatatacctagtattagattac-ACGTCTACTGGCAA-AGAA----CCA-GCAA---TCAAAT-TAACATA-AG-TGTGAAGACGGACTACTT--GGAGGAACATAGGTAGAGTTAATA-TG-T--GTT----TT-ACCAAG----TA----G-----T-GTCA-CATA--------------cattagatttataccattac
gi|12 : tgatGATAGAGGT-AC--TG-C--G-T----TTTACC-TA-----A----G-----T--T-G-TAAA--------------A--TA-A---GCAGA------------AA--A-TCTaatgtgatagaggtactgcgttttacctaagttgtaaaataagcagaaaatct
gi|13 : tgatacgtctactggcaaagaaccagcaatcaaattaacataagtgtgaagacggactacttggaggaacataggtagagttaatatgtgttttaccaagtagtgtcacataaatgtCCGA-ATGGCTACTGACCT-AAAA----C-A-ACAT---TCGG-T-TAACTTA-GT-AGTAAA-AAGGGCT-CTTAAGAGGGGACTCAGGTAGAGAT-ACC-TG-TACG-TGTAATT-ACC-TG----TA----G-----T-GT-A-CATA--------------A--CAGT---GCAG
gi|14 : tgtttcAGGT-ACC-CG-T--G-T----CT-ACC-TA----TA----A-----T-GT-A--A-A--------------G--AA-A---GCAGAA-----------AA--AATCTTC-A------TTT-TATTCA-GTA------------------------T----TATTTCCATAAA-T-tat
gi|15 : CGA-ATGGCTATTCGCTTGAAAA----T-A-ACAA---TCAA-T-TAACTTG-GG-TGTGAA-TGGGGCT-C-CAAGAGGGAGCACAGGTAGATAT-ACC-T--T--G-C----AT-ACC-TG----TA----caatataagtgtacacatatctgatttataccatg
gi|16 : TAGAGGT-ACC-TG-T--G-T----T--ATC-TG----TA----G-----T-GT-A-GA----------------G--GA-A---ACAGAG-----------AA--A-TCTTC-A-A-A--ATG-TATTTA-GAG-TGC-ACAAC---G---T--GTttcactt
gi|17 : ta-ATGGCTACTC--CT-AAAA----T-A-ACAA---TCAA-TCTAATT---GG-TGTGAA-AGGGGCT-CTCTAGAGGGAACCCA-GTGGACTT-A-C-TG-T--G-T----TT-ACC-TG----Ttgcaatattta
gi|18 : GA-ATGGCTACTTGCTT-AAAA----T-A-AC-A---TCAA---TAACTTG-GGCCGTGA
gi|2 : gtgccaCTGA-ACGGCTACTTACCT-ACAC----C-A-ACAT---TTAA-T-TAACTAA-GG-TGCGAA-CGAACGT-CTAAAGAGGGAACGC----AGAGTT-ACC-TG-T--G-A----TT-ACC-TG----TA----G-----T-GC-A-TATT--------------G--TA-
gi|2 : tccAAAGGT-ACT-TTCT--G-T----TT-GCC-TA----CA----G-----T-GT-A-AATG------------------A-A---GCAGAA-----------AG--A-TCTTC-A-C-A--GTT-TATTCA-GTA-TAT-GCAG----T---T--GTATC----TGCTTTCATAAA-T-CATTA--CA-ATA-A----C----ATA-AC-T-G--ATT--------TAC--------ACC-A-CGAA-CTTCATTCAAA-ATGTCA--GA----T--A-AAGCGTTCAAATTCTACTAAATA-AATAAttttaaaaggtactttctgtttgcctacagtgtaaatgaagcagaaagatcttcacagtttattcagtatatgcagttgtatctgctttcataaatcattacaataacataactgatttacaccacgaacttcattcaaaatgtcagataaagcgttcaaattctactaaataaataacatagaactatattaataa
gi|3 : tccctgaacggctacttacctacaccaacatttaattaactaaggtgcgaacgaacgtctaaagagggaacgcagagttacctgtgattacctgtagtgcatattgtattttaCCGA-ATGGTTACTCGCCT-AAAA----C-A-ACAGCAGTCAT-T-TAATTTG-GG-TGTGA---GCCCCT-CTCAAGAGGGAACGCAGGTAGACAT-ACC-TG-T--G-T----TT-ACC-TG----CA----G-----T-AT-G-CATACTATTATTATGAAGG--TA-CCGTGCAGAA-----------AACAA-GCTTC-A-C-A--TTT-TATTCA-GAA-TAC-ACAAC---T---T--GTATT----TATTCTCATTCA-T-T-TTA--CATGTA-A----CT-TCATA-AC-T-A--ATTTATACCATCAATGATAATGAAATG-AAAA-CATTG-TCAAA-ATT--A--TA----T--A-AAA-ATT--GGTTTGACT--ATATAATGAcatagaactatattaataa
gi|4 : gtatgcGA-ATGGCCATCCAATT-AAAA----T-ATACAA---TCAA-T-TCCGTTGAGG-TGTGAA-AGGG-CT-CTCAAGAGGGAAAGCAGGT--ACTT-CCC-TA-T--G-T----TT-ACC-TGT---TA----G-----TAAT-A-CAGATT------------A--TA-T---GGAGAAAGTGCAAGAACAA--A-TCTTC-A-CTATTTTT-TATTCA-GAATTAT-G-AAC---T---G--G--TT----TA-TTTCATATA---T-TTA--CATGTG-A----CT-ATATA-ACTT-A--ATT--------CAA--------AAA-GTAAAA-CATTG-TTAAAGATA--AATTAAAATT--AGAAA-ATT--AGTTTAACTA-ATATAATGAgaagtagtgcttt
gi|5 : gttcccaCGA-ACGTCTGCTGGCCT-AAAC----C-A-ACG----TC-----TAACT-----------A-A-------CTCAAGGGGGAACACAGATAGAGTT-ACC-TG-T--G-T----TT-ACC-TGAACATA----G-----T-AT-G--ATA--------------G--TA-C---CTAGTATT---------AG--A-TACTG-G-T-A--CCTATGTTCA-GNG-TAC-----C---T---A--GTATTAGA-TACTGGTACCTA-TGT-TTA--CCTGTACA----TA-ATGTA-AA-T-A--AAG--------CAG--------AAA----AAA-TCTTtaagtagtgatttt
gi|5 : ctgttccctGGT-ACC-TA-T--G-T----TT-ACC-TG----TACATAA-----T-GT-A-AATA------------------A-A---GCAGAA-----------AA--AATCTTC-G-C-A--TTT-TATTGA-GTA-TAC-GCAAC---T---T--GTATTTTA-TATTTTCATAAA-T-cgcattttattgagtatacgcaacttgtattttatattttcataaatcattagatttataccatc
gi|6 : ctgttccctcgaacgtctgctggcctaaaccaacgtctaactaactcaagggggaacacagatagagttacctgtgtttacctgaacatagtatgatagtacctagtattagatactggtacctatgttcagngtacctagtattagatactCCGA-ACGGCTACTTACCT-AAAC----C-A-ACAT---CTAA-T-CAAC-----A-AGTGAA-AGGGGCT-CTCAAG--------------GAGTT-ATC-TG-T--G-T----TT-TCC-TG----TA----G-----T-GT-A-CGTA--------------G--TA-cattagatttataccatc
gi|6 : caaggtagtatgtttcgtaggtcgtggcagctgtattcTAGAG-T-ACA-TG-T--G-T----T--ACT-TT----TA----G-----T-AA-A-AA--------------------A-A---GGAGGG-----------AA--T-TCTGC-A-T-A--TCT-TATTCA-GTA-CAC-Gtctagtattatagagtacatgtgttacttttagtaaaaaaaggagggaattctgcatatcttattcagtacacggcatgattatgaatacaagttgcgtatactgaataaaatcagatatacctattggtgg
gi|6 : caaggtagtatgtttcgtaggtcgtggcagctgtattcccgaacggctacttacctaaaccaacatctaatcaacaagtgaaaggggctctcaaggagttatctgtgttttcctgtagtgtacgtagtatctagtatta-A--TTT-TATTCA-GTA-TAC-GCAAC---T---T--GTATT----CATAATCATgcatgattatgaatacaagttgcgtatactgaataaaatcagatatacctattggtgg
gi|7 : caaggtagtatgtttcgtaggtcgtggcagctgtattcccgaacggctacttacctaaaccaacatctaatcaacaagtgaaaggggctctcaaggagttatctgtgttttcctgtagtgtacgtagtatctagtattatagagtacatgtgttacttttagtaaaaaaaggagggaattctgcatatcttattcagtacacggc-ACGGCTACTGGCCT-AAAC----C-A-ACA----TCAAAT-TA--TTA-AGCTGTGAA-AGGGGCT-CTCAAGGGGAAAC--------AGTT-ACC-TG-C--G-C----TT-ACC-AG----TA----G-----T-GT-T-CATA--------------T--TA-C---CTAGAA-----------cagatatacctattggtgg
gi|7 : ggctgttttccctcTAGAGGT-ATC-TG-T--G-TG---TT-ACT-TG----TA----G-----T-GT-A-AATA------------------A-A---GCAGAA-----------AA--A-TCTCT-A-C-A--TTT-TATTCA-GTA-TAT-GCAGC---T---T--GTATT----TATTTTCATAAA-T-ctatagaggtatctgtgtgttacttgtagtgtaaataaagcagaaaaatctctacattttattcagtatatgcagcttgtatttattttcataaatcactatatttataccaccatcaatgcacacaataaaggaaa
gi|8 : ggctgttttccctcacggctactggcctaaaccaacatcaaattattaagctgtgaaaggggctctcaaggggaaacagttacctgcgcttaccagtagtgttcatattacctagaactaCTGA-ATGCCCACTCCCTT-AAAA----T-A-TCAA---TCAA-T-TAACTTG-GG-TGCGAT-AGGGGTT-CCCAAGAGAGAACGCAGGTAGACTT-ACC-TG-T--G-T----TT-ACG-TG----TA----G-----T-TT-G-CATA--------------T--TA-TTATGGAGAA-----------GA--A-TCTTC-A-C-T--TTT-TATTCG-GAA-TAC-GCAAC---T---T--GTGTT----TATT--CATATA-T-T-TTA--CACGTA-A----CT-ATATA-AC-T-A--ATT--------CAA--------AAA-G-TAAA-CATTG-TTAAA-ATA--A--TA----T--A-AAA-ATT--AGTTTGACTATATATAATAAcactatatttataccaccatcaatgcacacaataaaggaaa
gi|9 : CCGACATGCCCACTCGCTG-AAAAATATC-A-ACAA---T----T-TAACTTG-GG-TGTGAT-AAGGGTT-CCCAAGAGGGAACGC-GGTAGACTT-ACC-TGCT--G-T----TT-ACG-TG----TA----G-----T-TT-GCCATATT------------GT-TA-T---GGAG-A-----------AG--A-TCTTCAA-C-T--TTT-TATTCG-GAA-TACGGCAAC---T---T--GT-TT----T-TTTTCATATATT-T-TTA--CACGTA-A----CT-ATATA-AC-TAA--ATT--------C-A--------AAA-G-TAAACCCCTG-TTAAA-ATA--A--TA----TA-A-AAA-ATT--AAT
Alignments
lowQualScore : 1111 333333333333333333333 11111111111 1111 11 1111 3333333333333333333 1111 1111111
lowQualScore : 3 22 3 6666 3 3 1111 6 3 555 5 3 00 2 4 1 3 1 1 3 22 1 5555 1 1 3333 3333 3333 44 555 1 000000000000000000000 77777 33 22222222222 33 5 2 333 0 2 33 2 1 2 555 777 555555 1 7777 1 3 3 5 0 33 2 5 0000 55 5 5 5 66 6666666666666666666 1111 999 5 5 888 77 6666666 5 5 77 7 3
lowQualScore : . .. . .... . . .... . . ... . . .. . . . . . . . .. . .... . . .... .... .... .. ... . ..................... ..... .. ........... .. . . ... . . .. . . . ... ... ...... . .... . . . . . .. . . .... .. . . . .. ................... .... ... . . ... .. ....... . . .. . .
lowQualScore : 1 11 1 5555 1 1 1111 2 1 555 7 1 66 9 6 4 2 7 7 3 33 7 2222 7 7 7777 7777 9999 55 222 0 999999999999999999999 11111 44 77777777777 77 3 9 222 3 7 77 7 0 7 666 999 222222 5 3333 0 3 3 0 1 88 2 0 6666 44 0 0 0 99 9999999999999999999 0000 111 7 7 333 99 7777777 7 7 99 5 2
consensus : CCGA-ACGGCTACTCGCCT-AAAA----C-A-ACAA---TCAA-T-TAACTTG-GG-TGTGAA-AGGGGCT-CTCAAGAGGGAACGCAGGTAGAGNT-ACC-TG-T--G-T----TT-ACC-TG----T----A----GT--GT---ANAT-A--------------G--TA-N---GCAGAA--A-----------A--A-TCTTC-A-C-ATTT-T--ATTCA-GNAT-AC-GCAAC---T---T--GTATT----TATTTTCATANA-T-T-TTA--CACGTA-A----CT-ATATA-AC-T-A--ATT--------CAA--------AAA-G-NAAA-CNTTG-TCAAA-ATG--A--TA----T--A-AAA-ATT--AGTTTGACTATATATAATGA
Reference ( family-912 ) : CCGA-ACGGCTACTCGCCT-AAAA----C-A-ACAA---TCAA-T-TAACTTG-GG-TGTGAA-AGGGGCT-CTCAAGAGGGAACGCAGGTAGAGNT-ACC-TG-T--G-T----TT-ACC-TG----T----A----GT--GT---ANAT-A--------------G--TA-N---GCAGAA--A-----------A--A-TCTTC-A-C-ATTT-T--ATTCA-GNAT-AC-GCAAC---T---T--GTATT----TATTTTCATANA-T-T-TTA--CACGTA-A----CT-ATATA-AC-T-A--ATT--------CAA--------AAA-G-NAAA-CNTTG-TCAAA-ATG--A--TA----T--A-AAA-ATT--AGTTTGACTATATATAATGA
gi|1 : CTTA-GG-TGCGAA-AGGGG-T-CTCAAGGGGGAGCACAGGTAGA---------G-T--A-T----TT-ATC-TG----T----A----GT--GT---ATAT-A--------------G--TA-
gi|1 : caacatagcacaagcttcgcatgttgggatggctgtatccagataggtttaccagcctaaacTAGAGGT-ACC-TG-T--G-C----T--ATC-TA----T----A----GT--GT---AAAG-A--------------AGACA-G---ACAAAA--A-----------A--A-TCTTC-A-C-ATTT-T--ATTCA-GAAT-AC-AAAAC---TACATAAATATT----TATTTTCATATA-T-T-TGAAGAACATA-A----CTGATTTATAC-C-ATTACT--------GAA--------AAA-G-GAAA-GCTTG-TC-AA-TTG--A--TA----TAAA-AAA-ATT--AGTTTGACTATttatagaggtacctgtgctatctatagtgtaaagaagacagacaaaaaaatcttcacattttattcagaatacaaaactacataaatatttattttcatatatttgaagaacataactgatttataccattactgaaaaaggaaagcttgtcaattgatataaaaaaattagtttgactatgatgactagtgcatttttcccctaatata
gi|10 : caacatagcacaagcttcgcatgttgggatggctgtatccagataggtttaccagcctaaaccttaggtgcgaaaggggtctcaagggggagcacaggtagagtatttatctgtagtgtatatagtattaAGAGGT-ACCGTG-T--G-T----TT-ATC-TG----T---------GT--GT---AGA--A--------------G--GA-A---ACAGAG--A-----------C--A-TCTTC-AAC-AATG-G--ATTTA-GAGT-GC-ATAACGTCT---T--GCAAT----T--TTTTGTATA-T-T-TTAAGTACATA-AAGTGTT-ACACA-AT-C-A----T--------CAATAAGA---AAA-G-GAAA-----G-ACACA-ATG--A--TG----T--A-AAA-ATT--AG-TTGACCATATAgatgactagtgcatttttcccctaatata
gi|11 : atagagtttatttgtattttatatagtgttaGGGGTT-CTCAAGGGGGAACACAGAT-GAGTT-ACC-TG-T--G-T----TT-ACatggtggactt
gi|11 : GGT-ACC-TA-T--G-T----TC-A-----------------------GT---GAAT-A------------------A-A---GCAGAA--A-----------A--A-TCTTC-G-C-A-TT-T--ATTGATGTAT-AC-G-AACT--T---T--GTATTTTTATATTTTCATAAA-T-tgaactagtctgatatacctagtattagattacggtacctatgttcagtgaataaagcagaaaaatcttcgcatttattgatgtatacgaactttgtatttttatattttcataaatcattagatttataccattac
gi|12 : ggggttctcaagggggaacacagatgagttacctgtgtttactgaactagtctgatatacctagtattagattac-ACGTCTACTGGCAA-AGAA----CCA-GCAA---TCAAAT-TAACATA-AG-TGTGAAGACGGACTACTT--GGAGGAACATAGGTAGAGTTAATA-TG-T--GTT----TT-ACCAAG----T----A----GT--GTC--ACAT-A--------------cattagatttataccattac
gi|12 : tgatGATAGAGGT-AC--TG-C--G-T----TTTACC-TA---------A----GTT-GT---AAA-----------------A--TA-A---GCAGA---A-----------A--A-TCTaatgtgatagaggtactgcgttttacctaagttgtaaaataagcagaaaatct
gi|13 : tgatacgtctactggcaaagaaccagcaatcaaattaacataagtgtgaagacggactacttggaggaacataggtagagttaatatgtgttttaccaagtagtgtcacataaatgtCCGA-ATGGCTACTGACCT-AAAA----C-A-ACAT---TCGG-T-TAACTTA-GT-AGTAAA-AAGGGCT-CTTAAGAGGGGACTCAGGTAGAGAT-ACC-TG-TACG-TGTAATT-ACC-TG----T----A----GT--GT---ACAT-A--------------A--CAGT---GCAG
gi|14 : tgtttcAGGT-ACC-CG-T--G-T----CT-ACC-TA----T----A----AT--GT---AAAG-A------------------A-A---GCAGAA--A-----------A--AATCTTC-A----TTT-T--ATTCA-GTA------------------------T----TATTTCCATAAA-T-tat
gi|15 : CGA-ATGGCTATTCGCTTGAAAA----T-A-ACAA---TCAA-T-TAACTTG-GG-TGTGAA-TGGGGCT-C-CAAGAGGGAGCACAGGTAGATAT-ACC-T--T--G-C----AT-ACC-TG----T----A----caatataagtgtacacatatctgatttataccatg
gi|16 : TAGAGGT-ACC-TG-T--G-T----T--ATC-TG----T----A----GT--GT---AGA-----------------G--GA-A---ACAGAG--A-----------A--A-TCTTC-A-A-AATG-T--ATTTA-GAGT-GC-ACAAC---G---T--GTttcactt
gi|17 : ta-ATGGCTACTC--CT-AAAA----T-A-ACAA---TCAA-TCTAATT---GG-TGTGAA-AGGGGCT-CTCTAGAGGGAACCCA-GTGGACTT-A-C-TG-T--G-T----TT-ACC-TG----T----tgcaatattta
gi|18 : GA-ATGGCTACTTGCTT-AAAA----T-A-AC-A---TCAA---TAACTTG-GGCCGTGA
gi|2 : gtgccaCTGA-ACGGCTACTTACCT-ACAC----C-A-ACAT---TTAA-T-TAACTAA-GG-TGCGAA-CGAACGT-CTAAAGAGGGAACGC----AGAGTT-ACC-TG-T--G-A----TT-ACC-TG----T----A----GT--GC---ATAT-T--------------G--TA-
gi|2 : tccAAAGGT-ACT-TTCT--G-T----TT-GCC-TA----C----A----GT--GT---AAAT-G------------------A-A---GCAGAA--A-----------G--A-TCTTC-A-C-AGTT-T--ATTCA-GTAT-AT-GCAG----T---T--GTATC----TGCTTTCATAAA-T-CATTA--CA-ATA-A----C----ATA-AC-T-G--ATT--------TAC--------ACC-A-CGAA-CTTCATTCAAA-ATGTCA--GA----T--A-AAGCGTTCAAATTCTACTAAATA-AATAAttttaaaaggtactttctgtttgcctacagtgtaaatgaagcagaaagatcttcacagtttattcagtatatgcagttgtatctgctttcataaatcattacaataacataactgatttacaccacgaacttcattcaaaatgtcagataaagcgttcaaattctactaaataaataacatagaactatattaataa
gi|3 : tccctgaacggctacttacctacaccaacatttaattaactaaggtgcgaacgaacgtctaaagagggaacgcagagttacctgtgattacctgtagtgcatattgtattttaCCGA-ATGGTTACTCGCCT-AAAA----C-A-ACAGCAGTCAT-T-TAATTTG-GG-TGTGA---GCCCCT-CTCAAGAGGGAACGCAGGTAGACAT-ACC-TG-T--G-T----TT-ACC-TG----C----A----GT--AT---GCAT-ACTATTATTATGAAGG--TA-CCGTGCAGAA--A-----------ACAA-GCTTC-A-C-ATTT-T--ATTCA-GAAT-AC-ACAAC---T---T--GTATT----TATTCTCATTCA-T-T-TTA--CATGTA-A----CT-TCATA-AC-T-A--ATTTATACCATCAATGATAATGAAATG-AAAA-CATTG-TCAAA-ATT--A--TA----T--A-AAA-ATT--GGTTTGACT--ATATAATGAcatagaactatattaataa
gi|4 : gtatgcGA-ATGGCCATCCAATT-AAAA----T-ATACAA---TCAA-T-TCCGTTGAGG-TGTGAA-AGGG-CT-CTCAAGAGGGAAAGCAGGTAC--TT-CCC-TA-T--G-T----TT-ACC-TG----TTAGTA----AT--AC---AGAT-T--------------A--TA-T---GGAGAA--AGTGCAAGAACAA--A-TCTTC-A-CTATTT-TTTATTCA-GAATTAT-G-AAC---T---G--GT--T----TATTT-CATATA-T-T-T-A--CATGTG-A----CT-ATATA-ACTT-A--ATT--------CAA--------AAA-GTAAAA-CATTG-TTAAAGATA--AATTAAAATT--AGAAA-ATT--AGTTTAACTA-ATATAATGAgaagtagtgcttt
gi|5 : gttcccaCGA-ACGTCTGCTGGCCT-AAAC----C-A-ACG----TC-----TAACT-----------A-A-------CTCAAGGGGGAACACAGATAGAGTT-ACC-TG-T--G-T----TT-ACC-TGAACAT----A----GT--AT----GAT-A--------------G--TA-C---CTAGTATTA-----------G--A-TACTG-G-T-ACCTAT--GTTCA-GNGT-AC-----C---T---A--GTATTAGA-TACTGGTACCTA-TGT-TTA--CCTGTACA----TA-ATGTA-AA-T-A--AAG--------CAG--------AAA----AAA-TCTTtaagtagtgatttt
gi|5 : ctgttccctGGT-ACC-TA-T--G-T----TT-ACC-TG----T----ACATAAT--GT---AAAT-A------------------A-A---GCAGAA--A-----------A--AATCTTC-G-C-ATTT-T--ATTGA-GTAT-AC-GCAAC---T---T--GTATTTTA-TATTTTCATAAA-T-cgcattttattgagtatacgcaacttgtattttatattttcataaatcattagatttataccatc
gi|6 : ctgttccctcgaacgtctgctggcctaaaccaacgtctaactaactcaagggggaacacagatagagttacctgtgtttacctgaacatagtatgatagtacctagtattagatactggtacctatgttcagngtacctagtattagatactCCGA-ACGGCTACTTACCT-AAAC----C-A-ACAT---CTAA-T-CAAC-----A-AGTGAA-AGGGGCT-CTCAAG--------------GAGTT-ATC-TG-T--G-T----TT-TCC-TG----T----A----GT--GT---ACGT-A--------------G--TA-cattagatttataccatc
gi|6 : caaggtagtatgtttcgtaggtcgtggcagctgtattcTAGAG-T-ACA-TG-T--G-T----T--ACT-TT----T----A----GT--AA---AAA---------------------A-A---GGAGGG--A-----------A--T-TCTGC-A-T-ATCT-T--ATTCA-GTAC-AC-Gtctagtattatagagtacatgtgttacttttagtaaaaaaaggagggaattctgcatatcttattcagtacacggcatgattatgaatacaagttgcgtatactgaataaaatcagatatacctattggtgg
gi|6 : caaggtagtatgtttcgtaggtcgtggcagctgtattcccgaacggctacttacctaaaccaacatctaatcaacaagtgaaaggggctctcaaggagttatctgtgttttcctgtagtgtacgtagtatctagtatta-ATTT-T--ATTCA-GTAT-AC-GCAAC---T---T--GTATT----CATAATCATgcatgattatgaatacaagttgcgtatactgaataaaatcagatatacctattggtgg
gi|7 : caaggtagtatgtttcgtaggtcgtggcagctgtattcccgaacggctacttacctaaaccaacatctaatcaacaagtgaaaggggctctcaaggagttatctgtgttttcctgtagtgtacgtagtatctagtattatagagtacatgtgttacttttagtaaaaaaaggagggaattctgcatatcttattcagtacacggc-ACGGCTACTGGCCT-AAAC----C-A-ACA----TCAAAT-TA--TTA-AGCTGTGAA-AGGGGCT-CTCAAGGGGAAAC--------AGTT-ACC-TG-C--G-C----TT-ACC-AG----T----A----GT--GT---TCAT-A--------------T--TA-C---CTAGAA--cagatatacctattggtgg
gi|7 : ggctgttttccctcTAGAGGT-ATC-TG-T--G-TG---TT-ACT-TG----T----A----GT--GT---AAAT-A------------------A-A---GCAGAA--A-----------A--A-TCTCT-A-C-ATTT-T--ATTCA-GTAT-AT-GCAGC---T---T--GTATT----TATTTTCATAAA-T-ctatagaggtatctgtgtgttacttgtagtgtaaataaagcagaaaaatctctacattttattcagtatatgcagcttgtatttattttcataaatcactatatttataccaccatcaatgcacacaataaaggaaa
gi|8 : ggctgttttccctcacggctactggcctaaaccaacatcaaattattaagctgtgaaaggggctctcaaggggaaacagttacctgcgcttaccagtagtgttcatattacctagaactaCTGA-ATGCCCACTCCCTT-AAAA----T-A-TCAA---TCAA-T-TAACTTG-GG-TGCGAT-AGGGGTT-CCCAAGAGAGAACGCAGGTAGACTT-ACC-TG-T--G-T----TT-ACG-TG----T----A----GTTTGC---ATATTA--------------T--TA-T---GGAGAA--G-----------A--A-TCTTC-A-C-TTTT-T--ATTCG-GAAT-AC-GCAAC---T---T--GTGTT----TATT--CATATA-T-T-TTA--CACGTA-A----CT-ATATA-AC-T-A--ATT--------CAA--------AAA-G-TAAA-CATTG-TTAAA-ATA--A--TA----T--A-AAA-ATT--AGTTTGACTATATATAATAAcactatatttataccaccatcaatgcacacaataaaggaaa
gi|9 : CCGACATGCCCACTCGCTG-AAAAATATC-A-ACAA---T----T-TAACTTG-GG-TGTGAT-AAGGGTT-CCCAAGAGGGAACGC-GGTAGACTT-ACC-TGCT--G-T----TT-ACG-TG----T----A----GT--TTGCCATAT-T--------------GT-TA-T---GGAG-A--A-----------G--A-TCTTCAA-C-TTTT-T--ATTCG-GAAT-ACGGCAAC---T---T--GT-TT----T-TTTTCATATATT-T-TTA--CACGTA-A----CT-ATATA-AC-TAA--ATT--------C-A--------AAA-G-TAAACCCCTG-TTAAA-ATA--A--TA----TA-A-AAA-ATT--AAT
Alignments
lowQualScore : 1111 333333333333333333333 11111111111 1111 11 1111 3333333333333333333 1111 1111111
lowQualScore : 3 22 3 6666 3 3 1111 6 3 555 5 3 00 2 4 1 3 1 1 3 22 1 5555 1 1 3333 3333 3333 44 555 1 000000000000000000000 77777 33 22222222222 33 5 2 333 0 2 33 2 1 2 555 777 555555 1 7777 1 3 3 5 0 33 2 5 0000 55 5 5 5 66 6666666666666666666 1111 999 5 5 888 77 6666666 5 5 77 7 3
lowQualScore : . .. . .... . . .... . . ... . . .. . . . . . . . .. . .... . . .... .... .... .. ... . ..................... ..... .. ........... .. . . ... . . .. . . . ... ... ...... . .... . . . . . .. . . .... .. . . . .. ................... .... ... . . ... .. ....... . . .. . .
lowQualScore : 1 11 1 5555 1 1 1111 2 1 555 7 1 66 9 6 4 2 7 7 3 33 7 2222 7 7 7777 7777 9999 55 222 0 999999999999999999999 11111 44 77777777777 77 3 9 222 3 7 77 7 0 7 666 999 222222 5 3333 0 3 3 0 1 88 2 0 6666 44 0 0 0 99 9999999999999999999 0000 111 7 7 333 99 7777777 7 7 99 5 2
consensus : CCGA-ACGGCTACTCGCCT-AAAA----C-A-ACAA---TCAA-T-TAACTTG-GG-TGTGAA-AGGGGCT-CTCAAGAGGGAACGCAGGTAGAGNT-ACC-TG-T--G-T----TT-ACC-TG----T----A----GT--GT---ANAT-A--------------G--TA-N---GCAGAA--A-----------A--A-TCTTC-A-C-ATTT-T--ATTCA-GNAT-AC-GCAAC---T---T--GTATT----TATTTTCATANA-T-T-TTA--CACGTA-A----CT-ATATA-AC-T-A--ATT--------CAA--------AAA-G-NAAA-CNTTG-TCAAA-ATG--A--TA----T--A-AAA-ATT--AGTTTGACTATATATAATGA
Reference ( family-912 ) : CCGA-ACGGCTACTCGCCT-AAAA----C-A-ACAA---TCAA-T-TAACTTG-GG-TGTGAA-AGGGGCT-CTCAAGAGGGAACGCAGGTAGAGNT-ACC-TG-T--G-T----TT-ACC-TG----T----A----GT--GT---ANAT-A--------------G--TA-N---GCAGAA--A-----------A--A-TCTTC-A-C-ATTT-T--ATTCA-GNAT-AC-GCAAC---T---T--GTATT----TATTTTCATANA-T-T-TTA--CACGTA-A----CT-ATATA-AC-T-A--ATT--------CAA--------AAA-G-NAAA-CNTTG-TCAAA-ATG--A--TA----T--A-AAA-ATT--AGTTTGACTATATATAATGA
gi|1 : CTTA-GG-TGCGAA-AGGGG-T-CTCAAGGGGGAGCACAGGTAGA---------G-T--A-T----TT-ATC-TG----T----A----GT--GT---ATAT-A--------------G--TA-
gi|1 : caacatagcacaagcttcgcatgttgggatggctgtatccagataggtttaccagcctaaacTAGAGGT-ACC-TG-T--G-C----T--ATC-TA----T----A----GT--GT---AAAG-A--------------AGACA-G---ACAAAA--A-----------A--A-TCTTC-A-C-ATTT-T--ATTCA-GAAT-AC-AAAAC---TACATAAATATT----TATTTTCATATA-T-T-TGAAGAACATA-A----CTGATTTATAC-C-ATTACT--------GAA--------AAA-G-GAAA-GCTTG-TC-AA-TTG--A--TA----TAAA-AAA-ATT--AGTTTGACTATttatagaggtacctgtgctatctatagtgtaaagaagacagacaaaaaaatcttcacattttattcagaatacaaaactacataaatatttattttcatatatttgaagaacataactgatttataccattactgaaaaaggaaagcttgtcaattgatataaaaaaattagtttgactatgatgactagtgcatttttcccctaatata
gi|10 : caacatagcacaagcttcgcatgttgggatggctgtatccagataggtttaccagcctaaaccttaggtgcgaaaggggtctcaagggggagcacaggtagagtatttatctgtagtgtatatagtattaAGAGGT-ACCGTG-T--G-T----TT-ATC-TG----T---------GT--GT---AGA--A--------------G--GA-A---ACAGAG--A-----------C--A-TCTTC-AAC-AATG-G--ATTTA-GAGT-GC-ATAACGTCT---T--GCAAT----T--TTTTGTATA-T-T-TTAAGTACATA-AAGTGTT-ACACA-AT-C-A----T--------CAATAAGA---AAA-G-GAAA-----G-ACACA-ATG--A--TG----T--A-AAA-ATT--AG-TTGACCATATAgatgactagtgcatttttcccctaatata
gi|11 : atagagtttatttgtattttatatagtgttaGGGGTT-CTCAAGGGGGAACACAGAT-GAGTT-ACC-TG-T--G-T----TT-ACatggtggactt
gi|11 : GGT-ACC-TA-T--G-T----TC-A-----------------------GT---GAAT-A------------------A-A---GCAGAA--A-----------A--A-TCTTC-G-C-A-TT-T--ATTGATGTAT-AC-G-AACT--T---T--GTATTTTTATATTTTCATAAA-T-tgaactagtctgatatacctagtattagattacggtacctatgttcagtgaataaagcagaaaaatcttcgcatttattgatgtatacgaactttgtatttttatattttcataaatcattagatttataccattac
gi|12 : ggggttctcaagggggaacacagatgagttacctgtgtttactgaactagtctgatatacctagtattagattac-ACGTCTACTGGCAA-AGAA----CCA-GCAA---TCAAAT-TAACATA-AG-TGTGAAGACGGACTACTT--GGAGGAACATAGGTAGAGTTAATA-TG-T--GTT----TT-ACCAAG----T----A----GT--GTC--ACAT-A--------------cattagatttataccattac
gi|12 : tgatGATAGAGGT-AC--TG-C--G-T----TTTACC-TA---------A----GTT-GT---AAA-----------------A--TA-A---GCAGA---A-----------A--A-TCTaatgtgatagaggtactgcgttttacctaagttgtaaaataagcagaaaatct
gi|13 : tgatacgtctactggcaaagaaccagcaatcaaattaacataagtgtgaagacggactacttggaggaacataggtagagttaatatgtgttttaccaagtagtgtcacataaatgtCCGA-ATGGCTACTGACCT-AAAA----C-A-ACAT---TCGG-T-TAACTTA-GT-AGTAAA-AAGGGCT-CTTAAGAGGGGACTCAGGTAGAGAT-ACC-TG-TACG-TGTAATT-ACC-TG----T----A----GT--GT---ACAT-A--------------A--CAGT---GCAG
gi|14 : tgtttcAGGT-ACC-CG-T--G-T----CT-ACC-TA----T----A----AT--GT---AAAG-A------------------A-A---GCAGAA--A-----------A--AATCTTC-A----TTT-T--ATTCA-GTA------------------------T----TATTTCCATAAA-T-tat
gi|15 : CGA-ATGGCTATTCGCTTGAAAA----T-A-ACAA---TCAA-T-TAACTTG-GG-TGTGAA-TGGGGCT-C-CAAGAGGGAGCACAGGTAGATAT-ACC-T--T--G-C----AT-ACC-TG----T----A----caatataagtgtacacatatctgatttataccatg
gi|16 : TAGAGGT-ACC-TG-T--G-T----T--ATC-TG----T----A----GT--GT---AGA-----------------G--GA-A---ACAGAG--A-----------A--A-TCTTC-A-A-AATG-T--ATTTA-GAGT-GC-ACAAC---G---T--GTttcactt
gi|17 : ta-ATGGCTACTC--CT-AAAA----T-A-ACAA---TCAA-TCTAATT---GG-TGTGAA-AGGGGCT-CTCTAGAGGGAACCCA-GTGGACTT-A-C-TG-T--G-T----TT-ACC-TG----T----tgcaatattta
gi|18 : GA-ATGGCTACTTGCTT-AAAA----T-A-AC-A---TCAA---TAACTTG-GGCCGTGA
gi|2 : gtgccaCTGA-ACGGCTACTTACCT-ACAC----C-A-ACAT---TTAA-T-TAACTAA-GG-TGCGAA-CGAACGT-CTAAAGAGGGAACGC----AGAGTT-ACC-TG-T--G-A----TT-ACC-TG----T----A----GT--GC---ATAT-T--------------G--TA-
gi|2 : tccAAAGGT-ACT-TTCT--G-T----TT-GCC-TA----C----A----GT--GT---AAAT-G------------------A-A---GCAGAA--A-----------G--A-TCTTC-A-C-AGTT-T--ATTCA-GTAT-AT-GCAG----T---T--GTATC----TGCTTTCATAAA-T-CATTA--CA-ATA-A----C----ATA-AC-T-G--ATT--------TAC--------ACC-A-CGAA-CTTCATTCAAA-ATGTCA--GA----T--A-AAGCGTTCAAATTCTACTAAATA-AATAAttttaaaaggtactttctgtttgcctacagtgtaaatgaagcagaaagatcttcacagtttattcagtatatgcagttgtatctgctttcataaatcattacaataacataactgatttacaccacgaacttcattcaaaatgtcagataaagcgttcaaattctactaaataaataacatagaactatattaataa
gi|3 : tccctgaacggctacttacctacaccaacatttaattaactaaggtgcgaacgaacgtctaaagagggaacgcagagttacctgtgattacctgtagtgcatattgtattttaCCGA-ATGGTTACTCGCCT-AAAA----C-A-ACAGCAGTCAT-T-TAATTTG-GG-TGTGA---GCCCCT-CTCAAGAGGGAACGCAGGTAGACAT-ACC-TG-T--G-T----TT-ACC-TG----C----A----GT--AT---GCAT-ACTATTATTATGAAGG--TA-CCGTGCAGAA--A-----------ACAA-GCTTC-A-C-ATTT-T--ATTCA-GAAT-AC-ACAAC---T---T--GTATT----TATTCTCATTCA-T-T-TTA--CATGTA-A----CT-TCATA-AC-T-A--ATTTATACCATCAATGATAATGAAATG-AAAA-CATTG-TCAAA-ATT--A--TA----T--A-AAA-ATT--GGTTTGACT--ATATAATGAcatagaactatattaataa
gi|4 : gtatgcGA-ATGGCCATCCAATT-AAAA----T-ATACAA---TCAA-T-TCCGTTGAGG-TGTGAA-AGGG-CT-CTCAAGAGGGAAAGCAGGTAC--TT-CCC-TA-T--G-T----TT-ACC-TG----TTAGTA----AT--AC---AGAT-T--------------A--TA-T---GGAGAA--AGTGCAAGAACAA--A-TCTTC-A-CTATTT-TTTATTCA-GAATTAT-G-AAC---T---G--GT--T----TATTT-CATATA-T-T-T-A--CATGTG-A----CT-ATATA-ACTT-A--ATT--------CAA--------AAA-GTAAAA-CATTG-TTAAAGATA--AATTAAAATT--AGAAA-ATT--AGTTTAACTA-ATATAATGAgaagtagtgcttt
gi|5 : gttcccaCGA-ACGTCTGCTGGCCT-AAAC----C-A-ACG----TC-----TAACT-----------A-A-------CTCAAGGGGGAACACAGATAGAGTT-ACC-TG-T--G-T----TT-ACC-TGAACAT----A----GT--AT----GAT-A--------------G--TA-C---CTAGTATTA-----------G--A-TACTG-G-T-ACCTAT--GTTCA-GNGT-AC-----C---T---A--GTATTAGA-TACTGGTACCTA-TGT-TTA--CCTGTACA----TA-ATGTA-AA-T-A--AAG--------CAG--------AAA----AAA-TCTTtaagtagtgatttt
gi|5 : ctgttccctGGT-ACC-TA-T--G-T----TT-ACC-TG----T----ACATAAT--GT---AAAT-A------------------A-A---GCAGAA--A-----------A--AATCTTC-G-C-ATTT-T--ATTGA-GTAT-AC-GCAAC---T---T--GTATTTTA-TATTTTCATAAA-T-cgcattttattgagtatacgcaacttgtattttatattttcataaatcattagatttataccatc
gi|6 : ctgttccctcgaacgtctgctggcctaaaccaacgtctaactaactcaagggggaacacagatagagttacctgtgtttacctgaacatagtatgatagtacctagtattagatactggtacctatgttcagngtacctagtattagatactCCGA-ACGGCTACTTACCT-AAAC----C-A-ACAT---CTAA-T-CAAC-----A-AGTGAA-AGGGGCT-CTCAAG--------------GAGTT-ATC-TG-T--G-T----TT-TCC-TG----T----A----GT--GT---ACGT-A--------------G--TA-cattagatttataccatc
gi|6 : caaggtagtatgtttcgtaggtcgtggcagctgtattcTAGAG-T-ACA-TG-T--G-T----T--ACT-TT----T----A----GT--AA---AAA---------------------A-A---GGAGGG--A-----------A--T-TCTGC-A-T-ATCT-T--ATTCA-GTAC-AC-Gtctagtattatagagtacatgtgttacttttagtaaaaaaaggagggaattctgcatatcttattcagtacacggcatgattatgaatacaagttgcgtatactgaataaaatcagatatacctattggtgg
gi|6 : caaggtagtatgtttcgtaggtcgtggcagctgtattcccgaacggctacttacctaaaccaacatctaatcaacaagtgaaaggggctctcaaggagttatctgtgttttcctgtagtgtacgtagtatctagtatta-ATTT-T--ATTCA-GTAT-AC-GCAAC---T---T--GTATT----CATAATCATgcatgattatgaatacaagttgcgtatactgaataaaatcagatatacctattggtgg
gi|7 : caaggtagtatgtttcgtaggtcgtggcagctgtattcccgaacggctacttacctaaaccaacatctaatcaacaagtgaaaggggctctcaaggagttatctgtgttttcctgtagtgtacgtagtatctagtattatagagtacatgtgttacttttagtaaaaaaaggagggaattctgcatatcttattcagtacacggc-ACGGCTACTGGCCT-AAAC----C-A-ACA----TCAAAT-TA--TTA-AGCTGTGAA-AGGGGCT-CTCAAGGGGAAAC--------AGTT-ACC-TG-C--G-C----TT-ACC-AG----T----A----GT--GT---TCAT-A--------------T--TA-C---CTAGAA--cagatatacctattggtgg
gi|7 : ggctgttttccctcTAGAGGT-ATC-TG-T--G-TG---TT-ACT-TG----T----A----GT--GT---AAAT-A------------------A-A---GCAGAA--A-----------A--A-TCTCT-A-C-ATTT-T--ATTCA-GTAT-AT-GCAGC---T---T--GTATT----TATTTTCATAAA-T-ctatagaggtatctgtgtgttacttgtagtgtaaataaagcagaaaaatctctacattttattcagtatatgcagcttgtatttattttcataaatcactatatttataccaccatcaatgcacacaataaaggaaa
gi|8 : ggctgttttccctcacggctactggcctaaaccaacatcaaattattaagctgtgaaaggggctctcaaggggaaacagttacctgcgcttaccagtagtgttcatattacctagaactaCTGA-ATGCCCACTCCCTT-AAAA----T-A-TCAA---TCAA-T-TAACTTG-GG-TGCGAT-AGGGGTT-CCCAAGAGAGAACGCAGGTAGACTT-ACC-TG-T--G-T----TT-ACG-TG----T----A----GTTTGC---ATATTA--------------T--TA-T---GGAGAA--G-----------A--A-TCTTC-A-C-TTTT-T--ATTCG-GAAT-AC-GCAAC---T---T--GTGTT----TATT--CATATA-T-T-TTA--CACGTA-A----CT-ATATA-AC-T-A--ATT--------CAA--------AAA-G-TAAA-CATTG-TTAAA-ATA--A--TA----T--A-AAA-ATT--AGTTTGACTATATATAATAAcactatatttataccaccatcaatgcacacaataaaggaaa
gi|9 : CCGACATGCCCACTCGCTG-AAAAATATC-A-ACAA---T----T-TAACTTG-GG-TGTGAT-AAGGGTT-CCCAAGAGGGAACGC-GGTAGACTT-ACC-TGCT--G-T----TT-ACG-TG----T----A----GT--TTGCCATAT-T--------------GT-TA-T---GGAG-A--A-----------G--A-TCTTCAA-C-TTTT-T--ATTCG-GAAT-ACGGCAAC---T---T--GT-TT----T-TTTTCATATATT-T-TTA--CACGTA-A----CT-ATATA-AC-TAA--ATT--------C-A--------AAA-G-TAAACCCCTG-TTAAA-ATA--A--TA----TA-A-AAA-ATT--AAT
blockSeqs : C GA G ATAT . T GCAG A C TGA C G A A A G A G C AC T GTAA T A AACA TAGT CATA TT GCC A TACTATTATTATGAAGGT CCGT TT GTGCAAGAACA CA A A AC A TT T A T GGC GTC T A TTTA T T G A AG C C AGTG T . T A . TATACCATCAATGATAATG TGA CCC T G GTC AT AAATT G C CA T T
blockSeqs : . CG . . . . T . . TA C . . A A G . . C . . G . . . . . T C G GAAGAC GT . . . A . CT . . . T . AT T T A AGA A . . . . T . . T . . . . CAATAAGA GTA CT . . G . TA . . . A T
blockSeqs : . TG . . . . A . . TA . . . T A T . . . . . . . . . . . . . A TTATT A . . . . . C . . . T . AC . T A TTA A . . . . T . . T . . . . TAC GG CA . . T . T . . . T T
blockSeqs : . TA . . . . A . . TG . . . A A G . . . . . . . . . . . . . C TTGTT A . . . . . A . . . A . GC . T A . A . . . . T . . A . . . . CAA AC CA . . A . T . . . .
blockSeqs : . CG . . . . A . . TG . . . C A T . . . . . . . . . . . . . A TAAC A . . . . . C . . . T . AC . T A . C . . . . C . . T . . . . CAG GT TC . . A . T . . . .
blockSeqs : . CA . . . . T . . AA . . . G A G . . . . . . . . . . . . . C TTGT A . . . . . C . . . A . GC . G A . T . . . . C . . T . . . . CAA GT CA . . A . T . . .
blockSeqs : . GG . . . . A . . TG . . . G A A . . . . . . . . . . . . . A TTAT A . . . . . T . . . A . GC . A A . T . . . . . . . . . . . . CA . .
blockSeqs : . TA . . . . T . . TA . . . G A G . . . . . . . . . . . . . G TAGT A . . . . . C . . . N . GC . T A . A . .
blockSeqs : . GG . . . . A . . TG . . . A A A . . . . . . . . . . . . . T TAGT T . . . . . T . . . T . GC . T G . A . .
blockSeqs : . CC . . . . A . . TG . . . G . G . . . . . . . . . . . . . A TATT C . . . . . C . . . T . G . T . . T . .
blockSeqs : . CG . . . . . . . . . . . G . T . . . . . . . . . . . . . C AGG A . . . . . C . . . T . G . T . . T . .
blockSeqs : . C . . . . . . . . . . . . . T . . . . . . . . . . . . . G TA A . . . . . C . . . T . . . T . .
blockSeqs : . . . . . G . . . . . . . . . . . . . G AT C . . . . . . . . . A . . . .
blockSeqs : A . . . . . . . . . . . . . A GA A . . . . . . . A .
blockSeqs : T . . . . . . . . . . . . . C GG T .
blockSeqs : T . . . . . . . . . . . . . A TG T
blockSeqs : G . . . . . . . . . . . . . C TA
blockSeqs : T . . . . . . . . . . . . . A TA
blockSeqs : T . . . . . . . . . . . . . T .
blockSeqs : G . . . . . . . . . . . . . T
blockSeqs : T . . . . . . . . . . .
blockSeqs : T . . . . . . . . . .
blockSeqs : . . . . . . . .
blockSeqCons : TAGT***************** T***** ** T* ** T******
originalCons : CCGA-ACGGCTACTCGCCT-AAAA----C-A-ACAA---TCAA-T-TAACTTG-GG-TGTGAA-AGGGGCT-CTCAAGAGGGAACGCAGGTAGAGNT-ACC-TG-T--G-T----TT-ACC-TG----T----A----GT--GT---ANAT-A--------------G--TA-N---GCAGAA--A-----------A--A-TCTTC-A-C-ATTT-T--ATTCA-GNAT-AC-GCAAC---T---T--GTATT----TATTTTCATANA-T-T-TTA--CACGTA-A----CT-ATATA-AC-T-A--ATT--------CAA--------AAA-G-NAAA-CNTTG-TCAAA-ATG--A--TA----T--A-AAA-ATT--AGTTTGACTATATATAATGA
finalCons : CCGA-ACGGCTACTCGCCT-AAAA----C-A-ACAA---TCAA-T-TAACTTG-GG-TGTGAA-AGGGGCT-CTCAAGAGGGAACGCAGGTAGAGNT-ACC-TG-T--G-T----TT-ACC-TG----T----A----GT--GT---ANATAGT-----------------A-N---GCAGAA--A-----------A--A-TCTTC-A-C-ATTT-T--ATTCA-GNAT-AC-GCAAC---TT-----GTATT----TATTTTCATANA-T-T-TTA--CACGTA-A----CT-ATATA-AC-T-A--ATT--------CAA--------AAA-G-NAAA-CNTTG-TCAAA-ATG--A--TAT------A-AAA-ATT--AGTTTGACTATATATAATGA
Alignments
lowQualScore : 1111 333333333333333333333 11111111111 1111 11 1111 3333333333333333333 1111 1111111
lowQualScore : 3 22 3 6666 3 3 1111 6 3 555 5 3 00 2 4 1 3 1 1 3 22 1 5555 1 1 3333 3333 3333 44 555 1 000000000000000000000 77777 33 22222222222 33 5 2 333 0 2 33 2 1 2 555 777 555555 1 7777 1 3 3 5 0 33 2 5 0000 55 5 5 5 66 6666666666666666666 1111 999 5 5 888 77 6666666 5 5 77 7 3
lowQualScore : . .. . .... . . .... . . ... . . .. . . . . . . . .. . .... . . .... .... .... .. ... . ..................... ..... .. ........... .. . . ... . . .. . . . ... ... ...... . .... . . . . . .. . . .... .. . . . .. ................... .... ... . . ... .. ....... . . .. . .
lowQualScore : 1 11 1 5555 1 1 1111 2 1 555 7 1 66 9 6 4 2 7 7 3 33 7 2222 7 7 7777 7777 9999 55 222 0 999999999999999999999 11111 44 77777777777 77 3 9 222 3 7 77 7 0 7 666 999 222222 5 3333 0 3 3 0 1 88 2 0 6666 44 0 0 0 99 9999999999999999999 0000 111 7 7 333 99 7777777 7 7 99 5 2
consensus : CCGA-ACGGCTACTCGCCT-AAAA----C-A-ACAA---TCAA-T-TAACTTG-GG-TGTGAA-AGGGGCT-CTCAAGAGGGAACGCAGGTAGAGNT-ACC-TG-T--G-T----TT-ACC-TG----T----A----GT--GT---ANAT-A--------------G--TA-N---GCAGAA--A-----------A--A-TCTTC-A-C-ATTT-T--ATTCA-GNAT-AC-GCAAC---T---T--GTATT----TATTTTCATANA-T-T-TTA--CACGTA-A----CT-ATATA-AC-T-A--ATT--------CAA--------AAA-G-NAAA-CNTTG-TCAAA-ATG--A--TA----T--A-AAA-ATT--AGTTTGACTATATATAATGA
Reference ( family-912 ) : CCGA-ACGGCTACTCGCCT-AAAA----C-A-ACAA---TCAA-T-TAACTTG-GG-TGTGAA-AGGGGCT-CTCAAGAGGGAACGCAGGTAGAGNT-ACC-TG-T--G-T----TT-ACC-TG----T----A----GT--GT---ANAT-A--------------G--TA-N---GCAGAA--A-----------A--A-TCTTC-A-C-ATTT-T--ATTCA-GNAT-AC-GCAAC---T---T--GTATT----TATTTTCATANA-T-T-TTA--CACGTA-A----CT-ATATA-AC-T-A--ATT--------CAA--------AAA-G-NAAA-CNTTG-TCAAA-ATG--A--TA----T--A-AAA-ATT--AGTTTGACTATATATAATGA
gi|1 : CTTA-GG-TGCGAA-AGGGG-T-CTCAAGGGGGAGCACAGGTAGA---------G-T--A-T----TT-ATC-TG----T----A----GT--GT---ATAT-A--------------G--TA-
gi|1 : caacatagcacaagcttcgcatgttgggatggctgtatccagataggtttaccagcctaaacTAGAGGT-ACC-TG-T--G-C----T--ATC-TA----T----A----GT--GT---AAAG-A--------------AGACA-G---ACAAAA--A-----------A--A-TCTTC-A-C-ATTT-T--ATTCA-GAAT-AC-AAAAC---TACATAAATATT----TATTTTCATATA-T-T-TGAAGAACATA-A----CTGATTTATAC-C-ATTACT--------GAA--------AAA-G-GAAA-GCTTG-TC-AA-TTG--A--TA----TAAA-AAA-ATT--AGTTTGACTATttatagaggtacctgtgctatctatagtgtaaagaagacagacaaaaaaatcttcacattttattcagaatacaaaactacataaatatttattttcatatatttgaagaacataactgatttataccattactgaaaaaggaaagcttgtcaattgatataaaaaaattagtttgactatgatgactagtgcatttttcccctaatata
gi|10 : caacatagcacaagcttcgcatgttgggatggctgtatccagataggtttaccagcctaaaccttaggtgcgaaaggggtctcaagggggagcacaggtagagtatttatctgtagtgtatatagtattaAGAGGT-ACCGTG-T--G-T----TT-ATC-TG----T---------GT--GT---AGA--A--------------G--GA-A---ACAGAG--A-----------C--A-TCTTC-AAC-AATG-G--ATTTA-GAGT-GC-ATAACGTCT---T--GCAAT----T--TTTTGTATA-T-T-TTAAGTACATA-AAGTGTT-ACACA-AT-C-A----T--------CAATAAGA---AAA-G-GAAA-----G-ACACA-ATG--A--TG----T--A-AAA-ATT--AG-TTGACCATATAgatgactagtgcatttttcccctaatata
gi|11 : atagagtttatttgtattttatatagtgttaGGGGTT-CTCAAGGGGGAACACAGAT-GAGTT-ACC-TG-T--G-T----TT-ACatggtggactt
gi|11 : GGT-ACC-TA-T--G-T----TC-A-----------------------GT---GAAT-A------------------A-A---GCAGAA--A-----------A--A-TCTTC-G-C-A-TT-T--ATTGATGTAT-AC-G-AACT--T---T--GTATTTTTATATTTTCATAAA-T-tgaactagtctgatatacctagtattagattacggtacctatgttcagtgaataaagcagaaaaatcttcgcatttattgatgtatacgaactttgtatttttatattttcataaatcattagatttataccattac
gi|12 : ggggttctcaagggggaacacagatgagttacctgtgtttactgaactagtctgatatacctagtattagattac-ACGTCTACTGGCAA-AGAA----CCA-GCAA---TCAAAT-TAACATA-AG-TGTGAAGACGGACTACTT--GGAGGAACATAGGTAGAGTTAATA-TG-T--GTT----TT-ACCAAG----T----A----GT--GTC--ACAT-A--------------cattagatttataccattac
gi|12 : tgatGATAGAGGT-AC--TG-C--G-T----TTTACC-TA---------A----GTT-GT---AAA-----------------A--TA-A---GCAGA---A-----------A--A-TCTaatgtgatagaggtactgcgttttacctaagttgtaaaataagcagaaaatct
gi|13 : tgatacgtctactggcaaagaaccagcaatcaaattaacataagtgtgaagacggactacttggaggaacataggtagagttaatatgtgttttaccaagtagtgtcacataaatgtCCGA-ATGGCTACTGACCT-AAAA----C-A-ACAT---TCGG-T-TAACTTA-GT-AGTAAA-AAGGGCT-CTTAAGAGGGGACTCAGGTAGAGAT-ACC-TG-TACG-TGTAATT-ACC-TG----T----A----GT--GT---ACAT-A--------------A--CAGT---GCAG
gi|14 : tgtttcAGGT-ACC-CG-T--G-T----CT-ACC-TA----T----A----AT--GT---AAAG-A------------------A-A---GCAGAA--A-----------A--AATCTTC-A----TTT-T--ATTCA-GTA------------------------T----TATTTCCATAAA-T-tat
gi|15 : CGA-ATGGCTATTCGCTTGAAAA----T-A-ACAA---TCAA-T-TAACTTG-GG-TGTGAA-TGGGGCT-C-CAAGAGGGAGCACAGGTAGATAT-ACC-T--T--G-C----AT-ACC-TG----T----A----caatataagtgtacacatatctgatttataccatg
gi|16 : TAGAGGT-ACC-TG-T--G-T----T--ATC-TG----T----A----GT--GT---AGA-----------------G--GA-A---ACAGAG--A-----------A--A-TCTTC-A-A-AATG-T--ATTTA-GAGT-GC-ACAAC---G---T--GTttcactt
gi|17 : ta-ATGGCTACTC--CT-AAAA----T-A-ACAA---TCAA-TCTAATT---GG-TGTGAA-AGGGGCT-CTCTAGAGGGAACCCA-GTGGACTT-A-C-TG-T--G-T----TT-ACC-TG----T----tgcaatattta
gi|18 : GA-ATGGCTACTTGCTT-AAAA----T-A-AC-A---TCAA---TAACTTG-GGCCGTGA
gi|2 : gtgccaCTGA-ACGGCTACTTACCT-ACAC----C-A-ACAT---TTAA-T-TAACTAA-GG-TGCGAA-CGAACGT-CTAAAGAGGGAACGC----AGAGTT-ACC-TG-T--G-A----TT-ACC-TG----T----A----GT--GC---ATAT-T--------------G--TA-
gi|2 : tccAAAGGT-ACT-TTCT--G-T----TT-GCC-TA----C----A----GT--GT---AAAT-G------------------A-A---GCAGAA--A-----------G--A-TCTTC-A-C-AGTT-T--ATTCA-GTAT-AT-GCAG----T---T--GTATC----TGCTTTCATAAA-T-CATTA--CA-ATA-A----C----ATA-AC-T-G--ATT--------TAC--------ACC-A-CGAA-CTTCATTCAAA-ATGTCA--GA----T--A-AAGCGTTCAAATTCTACTAAATA-AATAAttttaaaaggtactttctgtttgcctacagtgtaaatgaagcagaaagatcttcacagtttattcagtatatgcagttgtatctgctttcataaatcattacaataacataactgatttacaccacgaacttcattcaaaatgtcagataaagcgttcaaattctactaaataaataacatagaactatattaataa
gi|3 : tccctgaacggctacttacctacaccaacatttaattaactaaggtgcgaacgaacgtctaaagagggaacgcagagttacctgtgattacctgtagtgcatattgtattttaCCGA-ATGGTTACTCGCCT-AAAA----C-A-ACAGCAGTCAT-T-TAATTTG-GG-TGTGA---GCCCCT-CTCAAGAGGGAACGCAGGTAGACAT-ACC-TG-T--G-T----TT-ACC-TG----C----A----GT--AT---GCAT-ACTATTATTATGAAGG--TA-CCGTGCAGAA--A-----------ACAA-GCTTC-A-C-ATTT-T--ATTCA-GAAT-AC-ACAAC---T---T--GTATT----TATTCTCATTCA-T-T-TTA--CATGTA-A----CT-TCATA-AC-T-A--ATTTATACCATCAATGATAATGAAATG-AAAA-CATTG-TCAAA-ATT--A--TA----T--A-AAA-ATT--GGTTTGACT--ATATAATGAcatagaactatattaataa
gi|4 : gtatgcGA-ATGGCCATCCAATT-AAAA----T-ATACAA---TCAA-T-TCCGTTGAGG-TGTGAA-AGGG-CT-CTCAAGAGGGAAAGCAGGTAC--TT-CCC-TA-T--G-T----TT-ACC-TG----TTAGTA----AT--AC---AGAT-T--------------A--TA-T---GGAGAA--AGTGCAAGAACAA--A-TCTTC-A-CTATTT-TTTATTCA-GAATTAT-G-AAC---T---G--GT--T----TATTT-CATATA-T-T-T-A--CATGTG-A----CT-ATATA-ACTT-A--ATT--------CAA--------AAA-GTAAAA-CATTG-TTAAAGATA--AATTAAAATT--AGAAA-ATT--AGTTTAACTA-ATATAATGAgaagtagtgcttt
gi|5 : gttcccaCGA-ACGTCTGCTGGCCT-AAAC----C-A-ACG----TC-----TAACT-----------A-A-------CTCAAGGGGGAACACAGATAGAGTT-ACC-TG-T--G-T----TT-ACC-TGAACAT----A----GT--AT----GAT-A--------------G--TA-C---CTAGTATTA-----------G--A-TACTG-G-T-ACCTAT--GTTCA-GNGT-AC-----C---T---A--GTATTAGA-TACTGGTACCTA-TGT-TTA--CCTGTACA----TA-ATGTA-AA-T-A--AAG--------CAG--------AAA----AAA-TCTTtaagtagtgatttt
gi|5 : ctgttccctGGT-ACC-TA-T--G-T----TT-ACC-TG----T----ACATAAT--GT---AAAT-A------------------A-A---GCAGAA--A-----------A--AATCTTC-G-C-ATTT-T--ATTGA-GTAT-AC-GCAAC---T---T--GTATTTTA-TATTTTCATAAA-T-cgcattttattgagtatacgcaacttgtattttatattttcataaatcattagatttataccatc
gi|6 : ctgttccctcgaacgtctgctggcctaaaccaacgtctaactaactcaagggggaacacagatagagttacctgtgtttacctgaacatagtatgatagtacctagtattagatactggtacctatgttcagngtacctagtattagatactCCGA-ACGGCTACTTACCT-AAAC----C-A-ACAT---CTAA-T-CAAC-----A-AGTGAA-AGGGGCT-CTCAAG--------------GAGTT-ATC-TG-T--G-T----TT-TCC-TG----T----A----GT--GT---ACGT-A--------------G--TA-cattagatttataccatc
gi|6 : caaggtagtatgtttcgtaggtcgtggcagctgtattcTAGAG-T-ACA-TG-T--G-T----T--ACT-TT----T----A----GT--AA---AAA---------------------A-A---GGAGGG--A-----------A--T-TCTGC-A-T-ATCT-T--ATTCA-GTAC-AC-Gtctagtattatagagtacatgtgttacttttagtaaaaaaaggagggaattctgcatatcttattcagtacacggcatgattatgaatacaagttgcgtatactgaataaaatcagatatacctattggtgg
gi|6 : caaggtagtatgtttcgtaggtcgtggcagctgtattcccgaacggctacttacctaaaccaacatctaatcaacaagtgaaaggggctctcaaggagttatctgtgttttcctgtagtgtacgtagtatctagtatta-ATTT-T--ATTCA-GTAT-AC-GCAAC---T---T--GTATT----CATAATCATgcatgattatgaatacaagttgcgtatactgaataaaatcagatatacctattggtgg
gi|7 : caaggtagtatgtttcgtaggtcgtggcagctgtattcccgaacggctacttacctaaaccaacatctaatcaacaagtgaaaggggctctcaaggagttatctgtgttttcctgtagtgtacgtagtatctagtattatagagtacatgtgttacttttagtaaaaaaaggagggaattctgcatatcttattcagtacacggc-ACGGCTACTGGCCT-AAAC----C-A-ACA----TCAAAT-TA--TTA-AGCTGTGAA-AGGGGCT-CTCAAGGGGAAAC--------AGTT-ACC-TG-C--G-C----TT-ACC-AG----T----A----GT--GT---TCAT-A--------------T--TA-C---CTAGAA--cagatatacctattggtgg
gi|7 : ggctgttttccctcTAGAGGT-ATC-TG-T--G-TG---TT-ACT-TG----T----A----GT--GT---AAAT-A------------------A-A---GCAGAA--A-----------A--A-TCTCT-A-C-ATTT-T--ATTCA-GTAT-AT-GCAGC---T---T--GTATT----TATTTTCATAAA-T-ctatagaggtatctgtgtgttacttgtagtgtaaataaagcagaaaaatctctacattttattcagtatatgcagcttgtatttattttcataaatcactatatttataccaccatcaatgcacacaataaaggaaa
gi|8 : ggctgttttccctcacggctactggcctaaaccaacatcaaattattaagctgtgaaaggggctctcaaggggaaacagttacctgcgcttaccagtagtgttcatattacctagaactaCTGA-ATGCCCACTCCCTT-AAAA----T-A-TCAA---TCAA-T-TAACTTG-GG-TGCGAT-AGGGGTT-CCCAAGAGAGAACGCAGGTAGACTT-ACC-TG-T--G-T----TT-ACG-TG----T----A----GTTTGC---ATATTA--------------T--TA-T---GGAGAA--G-----------A--A-TCTTC-A-C-TTTT-T--ATTCG-GAAT-AC-GCAAC---T---T--GTGTT----TATT--CATATA-T-T-TTA--CACGTA-A----CT-ATATA-AC-T-A--ATT--------CAA--------AAA-G-TAAA-CATTG-TTAAA-ATA--A--TA----T--A-AAA-ATT--AGTTTGACTATATATAATAAcactatatttataccaccatcaatgcacacaataaaggaaa
gi|9 : CCGACATGCCCACTCGCTG-AAAAATATC-A-ACAA---T----T-TAACTTG-GG-TGTGAT-AAGGGTT-CCCAAGAGGGAACGC-GGTAGACTT-ACC-TGCT--G-T----TT-ACG-TG----T----A----GT--TTGCCATAT-T--------------GT-TA-T---GGAG-A--A-----------G--A-TCTTCAA-C-TTTT-T--ATTCG-GAAT-ACGGCAAC---T---T--GT-TT----T-TTTTCATATATT-T-TTA--CACGTA-A----CT-ATATA-AC-TAA--ATT--------C-A--------AAA-G-TAAACCCCTG-TTAAA-ATA--A--TA----TA-A-AAA-ATT--AAT