lowQualScore : 1111111111 222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 11111111111 222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
lowQualScore : 333 999999 22222 1 222 11 1 2 1 1 1 1 1 8888888888888 1 33 1 1 1 111111 777 666666666 55555555 1 33333 1 1 33 1 11 11 11 2222222222222222 11 1 3333 22 22 1 444444 22222 111 1 1 1 22 1 22 222222 2222222222 111 111111 1 2 111111 22 444 11 11 1 1 11111 11111 111 1 1 22 1 1 1 333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 1 11 99999999999999 11 111 555555555555555 11 1 11 2222222 11 11 222 22 333333 222 33 777777777 44444444 2222 111 11111111111 1 1 3333 333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 33333333333333 11 1111111111 2222222222222222 111111111 66666666666666666
lowQualScore : 555 999999 6 33333 3 6 333 7 77 3 6 3 4 0 9 0 6 3 5 0 3 55 2 2 0 8 6666666666666 0 11 2 0 6 0 777777 000 2 3 6 111111111 6 44444444 3 0 66666 5 0 4 22 0 33 4 33 22 9999999999999999 11 8 44 0 6 4444 8 11 11 5 3 333333 4 55555 5 888 1 999 0 0 6 6 6 11 0 6 22 5 333333 0 1 2222222222 55 000 1 999999 3 3 7 666666 77 6 6 000 88 6 7 6 88 5 6 6 7 3 8 44444 33333 555 1 3 6 6 6 0 3 6 6 2 22 6 3 55 3 3 8 2 4 5 0 0 666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 0 22 00000000000000 6 88 1 666 0 888 3 2 111111111111111 33 0 66 6 33 7777777 33 22 333 00 7 1 444444 4 6 111 11 55 000000000 3 22222222 4444 999 7 0 55555555555 7 7 6 1 77 5 3 2222 5 000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 44 2 5 66666666666666 2 2 777 9999 99 666 3 5555555555 44 2222222222222222 55 55 777777777 5 55555555555555555 6
lowQualScore : ... ...... . ..... . . ... . .. . . . . . . . . . . . . .. . . . . ............. . .. . . . . ...... ... . . . ......... . ........ . . ..... . . . .. . .. . .. .. ................ .. . .. . . .... . .. .. . . ...... . ..... . ... . ... . . . . . .. . . .. . ...... . . .......... .. ... . ...... . . . ...... .. . . ... .. . . . .. . . . . . . ..... ..... ... . . . . . . . . . . .. . . .. . . . . . . . . ...................................................................................................... . .. .............. . .. . ... . ... . . ............... .. . .. . .. ....... .. .. ... .. . . ...... . . ... .. .. ......... . ........ .... ... . . ........... . . . . .. . . .... . ..................................................................................................................... .. . . .............. . . ... .... .. ... . .......... .. ................ .. .. ......... . ................. .
lowQualScore : 000 000000 0 77777 3 0 333 3 33 3 0 3 0 0 2 0 0 0 0 0 2 55 5 0 0 8 5555555555555 0 33 0 0 0 0 000000 000 5 2 0 000000000 0 55555555 2 0 00000 0 0 0 00 0 88 0 88 55 8888888888888888 22 0 00 8 0 0000 0 66 11 0 2 555555 2 33333 8 222 4 666 6 8 2 0 0 00 8 0 00 0 000000 7 5 0000000000 88 000 0 222222 3 3 3 000000 55 7 0 555 33 7 3 7 33 5 7 0 3 3 3 33333 33333 888 5 3 0 7 7 8 5 7 7 5 55 0 3 88 2 5 2 5 0 5 2 0 555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 0 22 88888888888888 0 22 2 888 2 222 0 5 000000000000000 88 0 55 0 88 0000000 88 00 333 00 3 0 000000 7 7 333 77 55 000000000 0 77777777 7777 333 3 7 00000000000 3 3 8 4 99 7 8 0000 7 888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 66 3 7 44444444444444 9 5 888 9999 55 444 1 5555555555 22 2222222222222222 55 55 444444444 2 00000000000000000 0
consensus : NNNNACATGTACGCGTAGCATTATCA------TATCAGAACAAA--TTTCAGTG-AATGACTGCAAATTGT---CAAGTGTCAGA-ATGGAAAGAA-TAGAAAATTGGATGACTTTTCGAAGTACTCGTAAATTAGTATTGTTTCANATTC-ATTCCATTA-TTTATNAAAGATGGGG-ATTATCTTATCCTTATGGAATATTTT-TACAATGTGGAAGAATGAAAATATTTC----AT----ATAATAT-ATCAA-TAAGAT-AAATTA-CAAAA-T-G-AGGCAGACTGTGTAAAGACATTTTTT----AGT-GTGGTGATGGTTG-GTG-GTTGTAGC-TGTAAGTTA-CATGTCTCCA-TATCTNTTT--AATTTTGTTTT-CCATACA--GACGNTTATAA--AATGC-NATGATGGGGTG-GGGAGGGA-GGTGGGGGTAACATGTC-TTCTTAACTTTNATATTTAATTTTGTTTT-CCATCCAGACAGACGTCTA-TCATATGCCATGTTGGTGAAAATGAAGTNTTTTTAGGGAAANAACAGGGAAAAGCGGCTAAAGGTAAACANATTATATACACTGTAATAAAATAATNAAAGAATAGAATATAAACATTTTAATTTAAAAAATGAAATTGCTAATGATATA------TTATGAAAAATATCCAGA--------AATATTAGAATCATGATCTACA------AT-AAATTCTCAAATTAAACTTAA--TTTT-AATT-GCGATTATGATTTTTT--ATTGA-TTTTAGAATGTGT-ACTTCCTAGCAG--TCCTATGGCAACTGAAAGCAGCAT-AGATTTAATTCAGCATTGTG---A-AATA--CCTGAAATATATCCCTG-AAAGAACTGGAGGAGGAGGTGGCTGAAGGCTTTGTGTTT-G-AAAAAAAAATATGTTGT-A-ACCGTTGANAATCCTTGGA-AAAAA-TATTCTAATATACTAGTAATCAATCTTGACNGGAGAAAATTATCTGTTAGGG-TAAATGAATGTCGTGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTCAAACTGACANNNAATCTTTAA-----ATTGACATTA-ATT-----GAACCCATGAG-AAAAAGCTAATGAACTAATTTTACCTT-CATGTACATTTTTAAATGCACTGAACTACGTATCACTNTTGTTATATTTTG-CTATGCAAAA--TTAT-ACAGTTTCATCATTCAT--TTTATTGTCA-AT---TA--TTTAATCTTTTTTAT---GAAATAG-ACTAATTATTGTTAAGGGG--T-AGAGANATTCAAA-ACATTTG-GAATGAAGGAANNTAGGAAGGGAAATTAGCAGNTGT------A-TTTA--A-GTTCAAT-TAATATACTCAATACCCTGGTACCTTTTTTTCAATCTTATTTCAGAGTG-ACGT--CG-AANCAACGTCA-G-ATT-TCGACGT----ACGGC-GTCGATT-A-CAAAATA--C--GA-----ACGA-AT-CTNT--T---T--------CGACGTT----------CGAA-----------ATCCGACG-T---------TGTTTCAACGTCGGATTTCGACGTC-G-TTCAATTAACN--AAATCAAATATCT---TTCGA-CG-CATT---TCGACGTC-GAAATGCG-------ACGT--TG-------------T--TT--CA--ACGTTGAA--TCAACG-TGATGTGCCTGCTGGGTTAGTGTTCGTTCTCGTTAAGTCC
Reference ( gi|1 ) : TACAACATGTAC---TAGCATTATTACATGTATATCAGGACAAA--TTGCAGTG-AATAACTGCAAATTGT---CAAGTGTCAGA-ATGGAAAGAA-TAGAGAAGTGGATGACTTTTCGAAGTACTCATAAATTAGTATTGTTTTAAATTT-ATTCCATTA-TTCATTAAAGATTGGG-ATTATTTTATCCTTATGAAATACTTT-TATAATGTGGAAGAATGAAAATATTTC----ATTTTAATAATAT-ATCAAATAAGAT-AAATCA-CAAAA-T-G-GGAC---CTGTGTAAAGACATTTCT-----A---GTGGTGATAGTTACATG-GATGTAAC-TGTAA---A-CATGTCTGCA-TATTTTTTTA-AATTTTGTTTT-CCATACA--GACGTTTATAA--AATGC-CATGATGGGGTG-GGGAGGGA-GGTGGGGGTAACATGTC-TTCTTAACTTTCATATTTAATTTTGTTTT-CCATC----CAGACGTCTA-TCAAATGCCAAGTTCGTGAAAATGAAGTG---TTGGGGAAATA--AGGGAAAAGCTGCTAAAGGTAAACATATTATATACACTGTAATAAAATAATAAAAGG-TAG-ATATC-ACATTTT-ATTT--AAAATGAAATTGCTAATGAGATA------TTATGGAAAATATCCAGATTTGCAGAAATATTAGAATCATGATCTACA------AT-AACTTCTCAAATTAAACCTCA--TTTT--ATT-GTGGTTATGGCATTTT--ATTGA-TTTTAGAATGTGT-ACTTCCTAGCAG--TCCTATGGTAACTGAAAGCAGCAT-AGATTTATTTCAACATTGTG---A-AATA--CCTGAAATATATCCCTG-AAAGAACTGGAGGAGGAGGTGGCTGAAGGTTTTGTGTTT-G-AAAAAAAAATCTGTTGT-A-ACCGTTGACAATCCTTGG--AAAGA-TATTTCAATATACTAGCAATCAATCTTGACAGGAGAAAATTATATGTTAGGG-TAAATGAATGTTGTGGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTATCTTTAAATTGACA--------TTAA-----AT-----------T-----GAACCCATGAG-AAAAAGCTAATAAAC------CATCTC-CATGTACATTTTTAAATGAATTGAACTATGTATCACTTTTGTTATATTTTG-CTTTGCAAAA--TTAT-ACAGTTTCATCATTCGT--TTTATTGTC--AT---TA--TTTAATCTTTTTTAT---GAAATAG-ACTAATTATTATTAAGGGG--T-AAAGAAATTCAAA-ACATTT--GAATGAAGGAAGTTAGG-------ATTAGCAATTGT------A-TTTA--ATGTTCAAT-TCATATACTCAGTAC-----------TTTTTCAATCTTATTTTAGAATG-ACGT--TG-AATCAACGTCAAG-ATT-TCGACGT----ATGGCTGTCAATT-A-CAAAATA--C--GA-----ACAACAT-CTCT--T---T--------CAACGTT---------TCGAA-----------ATTCGACGCT---------TGTTTCAACGTCAGATTTCGACGTC-G-TTCAATTAACA--AAATCAAACATCT---TTCAA-CG-CATT---TCAACGTC-GAAATGCG-------ACGT--TG-------------T--TT--CA--ACGTTGAA--TCAATG-TGATGTGCCTGCTGGGTTAGTAGGCGTTC-AGATAAATCCATTTGCCT
gi|14 : ACATGTACGCGTAGCATTATCA------TATCAGAACAAA--TTTCAGTC-AATGACTGAAAATTGT---CAAGTGTCAGA-
gi|2 : cctTAC---TAGCATTATTA------TATCAGAACAAA--TTTCAGTG-AATGACTGCAAATTGT---CAAGTGTCAGA--TGGAAAGAA-TAGAAAATTGGATGACTTTTCGAAGTACTCATAAATAAGTATTGTTTTAAATTT-ATTCCATTA-TTTAATAAAGATGGGGGATTATCTTATCCTTATGAAATATTTT-TACAATGTGGAAGAATGAAAATATTTC----AT-------ATAT-ATCAA-TAAGATCAAATTA-CAAAA-TTG-AGGCAGACTGTGTAAAGACATTTTTT----A---GTGGTGGTGATGGTGTGTGTTGTAAC-TGTAA---AACATGTCTCCAATATTTTTTAA-AATTTTGTTTT-CCATACA--GACGTTTATAA--AATGC-CATGATGGGG-----GAGGGG-GA---GGGTAACATGTC-TTCTTAACTTTCATATTTAATTTTGTTTT-CCATC----CAGACGTCTAATCATATGCCATGTTGGTGAAAATGAAGTT---TTGGTGAAACA--AGGGAATAGCTGCTAAAGGTAAACAGATTATATACACTGTAATAAAATAATAAAAGA-TAG-ATATA-ACATTTT-ATTT--AAAATGAAATTGCTAATGATATA------TTATGAAAAATATCCAGA--------AATATTAGAATCATGATCTACA------AT-AAATTCTCAAATGAAACTTAA--TTTT--ATT-GTGATAATGATTTTTC--ATTGA-TTTTAGAATGTGT-ACTTCCTAGCAG--TCCTATGGCAACTGAAAGCAGCAT-AAATTTAATTCAACACTGTG---A-AATA--CCTGACATATATCCCTG-AAAGAACTGGAGGAGGAGGTGGCTGAAGGCTTTGTGTTT-GAAAAAAAAAATCTGTTGT-A-ACCTTTGACAATCCTTGG--AAAAA-TATTCTAACATACTAGTAATCAATCTTGACAGGAGAAAATTATCTCTTAGGG-TAAATGAATGTTGTGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATCTTTAA-----ATTGACATTAAATT-----GAACCCATGAG-AAAAAGCTAATGAACTAATTTTACCTT-CATGTACATTTTTAAAAG-------------ATCACTTTTGTTCCAGTTTG-CTATGCAAAA--TTAT-ACAGTTTCATC-TTCAT--TTTATTGTC--AT---TA--TTTAATCTTTTT
gi|5 : ataatacTATATAAGAACAAAAATT-CAGTGCAATGACTGCAAATTGTGGTCAAG-GTCAAAGATGGAAAGAAATAGAAAA-TGGATGACTTTTCGACGTACTCGTAAATTAGTATTGTTTCATATTCAATTCC-TTATTTTATGAAAGATGGAG-A-TA-TCTAT-CTTATGGAATATTTT-TACAATGTGGAAGAATGAAAATATTTC----------ATAATATCATTA---AAAAT-AAATTA-CAAAA-T-GAAGACAGACT-TGTAAAGACATTTTT-----AGT-GTGGTGATGGTT--GTG-GTTG-AGCTTGTAAGTTA-TATGTCTCCA-TATCTATTT--AATTTTGTTTT-CCATACAAGGACGATTATAAACAATGCAAATGATGGGTTGAGGGAG----GGTGGGGGT---ATGTC-TTCTTAACTTTAATATTTAATTTTGCTTT-CCATCCAGACAGACGTCTA-TC--ATTCC-TGTTGGTGAAAATGAA-TGTTTTTAGGGAAAAAACAGGGAAAAGCGGCTAAAGGTAAACATCATAAAT---CTGTAA-AAAATAATTAAAGGATAGAATGTCAACATTTTAATTTAAAAAATGAAATTGCTAATGATATA------TTAATGAAAATAGCCA----TG-------------ATC------TACA------ATGAA--TCTC-AATTAAACTTAA--TTTTAAATT-GCGAGTATGAT-TTTT--ATTGA-TTTTAGAA-ATAC-ACATCCTAGCAGGATCC-AT-GCAACTGAAAGC-GCATAAGATTTTTTCCAGCA-TGTG---A-AATA---TTGCAATATATCACTGAAAAGAACTGGAGTAGGTGGTGGCTGAAGGCTTTGTGTTTGG-AAAAAAAAATATG-TGTAA-ACCATTGAACATCCTTTG--AAAAACTATTCC
gi|13 : t-ATGGAAAGAA-TAGAAAATTGGATGACTTCTCTAAGTAATCATAAATTAGTATTGTCTTAAATTT-ATTCCATTA-TTTATTAAAGAT
gi|6 : gggtgagGTACTCGTAAATTAGTATTGTTTCATATTC-ATTCCCTTA-TTTATGAAAGATGGAG-ATTATCTTATCTTTATGGAATATTTT-TACAATGTGGAAGAATGAAAATATTTC----AT-------ATAT-ATCAATTAA-AT-AAATTA-CAAAATT-G-AGACAGACTGTGTAAAGACATTTTT-----AGTGGTGGTGATGGTT--GTG-GTTGTAGC-TGTAAGTTA-TATGTCTCCA-TATCTATTT--AATTTTGTTTT-CCATACA--GACGATTATAA--AATGC-AATGATGGGGT---TGAGGGAGGGTGGGGGT---ATGTC-TTCTTAACTTTAATATTTAATTTTGCTTT-CCATCCAGACAGACGTCTA-TC--ATTCC-TGTTGGTGAAAATGAA-TGTTTTTAGGGAAAAAACAGGGAAAAGCGGCTAAAGGTAAACATCATAAAT---CTGTAA-AAAATAATTAAAGGATAGAATGTCAACATTTTAATTTAAAAAATGAAATTGCTAATGATATA------TTAATGAAAATAGCCA----TG-------------ATC------TACA------ATGAA--TCTC-AATTAAACTTAA--TTTTAAATT-GCGAGTATGAT-TTTT--ATTGA-TTTTAGAA-ATAC-ACATCCTAGCAGGATCC-AT-GCAACTGAAAGC-GCATAAGATTTTTTCCAGCA-TGTG---A-AATA---TTGCAATATATCACTGAAAAGAACTGGAGTAGGTGGTGGCTGAAGGCTTTGTGTTT-G-GAAAAAAAATATGTTGT-A-ACCATTGAACATCCTTGG--AAAAACTATTg
gi|11 : cGGG-ATTATCTTGTCCTTATGAAATACTTTAAAAAATGTGAAAGAATGAAAATATTTCATATATCTTGATAGTCC-ATCctagt
gi|10 : gAT-AAATTAACAAAC-T-G-AGGCAGACTGTGTA--GACATTTTTTAGGTG---GTGGTGATGGTTGAA---GTTGTAAC-TGTAA---A-CATGTCTCCA-TATTTTTTTTTAATTTTGTTTTTCCATACA--GACGTTTATAA--AATGC-CATGATGGGGTG-GGGGAGGA-----GGGGCAACATGTCTTTCTTAACTTTCATA-TTAATTTTGTTTTCCCATC----CAGACgggaaccgatgatgactttgtctatggactcagcgatgatgatgaatgtggct
gi|10 : AACATGTC-TCCATATTTTTT---TTTAATTTTGTTTTTCCATA----CAGACGTTTA-TAAAATGCCA
gi|3 : ataaattaacaaactgaggcagactgtgtagacattttttaggtggtggtgatggttgaagttgtaactgtaGACGTCTA-TCATATGACAACTTGGTGAAT-TGAAGTT---TTCGGGAAACA---GGGAAGAGCTGCTAAAGGTAAACAAATTATATACACTGTAATAAAATAATAAAAGA-TAG-ATATA-ATATTTT-ATTT--AAAATGAAATTGCTAAT-AGATA------TTATGAAAAATAC---------CAGAAATATTAGAATCATGATCTACA------AT-AAATTCCGAAATTAAACTTAATTTTTT--ATT-GTGATTATGAT-TTTT--ATTGATTTTTAGAATGTGTAACTTCCTAGCAG--TTC-ATGGCAACTGAAAGCAGCAT-AGATTTAATTC--------------------CCTGAAATATATCCCAG-AAAGAACTGGAGGAGGAGATGGCTGAAGGCTTTGTG-TT-G-AAAAAAAAATCTGTTGT-AGGCCGTTGACAATCCTTGGA-AAAAA-TATTCTAATATACTTGTAATCAATCTTGACTGGAGAAAATTATCTGTTAGGG-TAAATGAATGTCGTGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATCT-TTAATTGACAT-----------TAAATTGAACCCATAAGAAAAAAGCTATGAAACTAATT-TACCTA-CATGTACATTTTAAAATGAATTGAACTACGTATCACTTTTGTTATATTTTG-CTATGCAAAA--TTATAACAGTTTCAATATTCAT--TTTATTGTC--GT---TA--TTTAATC-TTTTTAT---GAAATA--ACCAATTATTGTTAAGGGG--TGAGAGATATTCAAA-A-ACTT--AAATGAAGGAAGTTA-G-------ATTAGCAGTTGT------ATTTTA--ATGTTCAAT-TGATATACTCAATACT----------TTTTTCAACCTTA-TTCAGAGTGCACGT--TGAAATCAACGCC-AG-ATT-TCGACGT-----CGGT--TCAGTTAA-CAAAAT---C--AA-----ACA------TCT--T---T--------CAACGTCATTTCAACGTCGAAATACAACGTTGATTCAACGTTGAAATCCGACGTTTCAACGTCAGATTTCGACGTCGG-TTCAATTAACA--AAATCAAACATCT---TTCGA-CGTCATT---TCAACGTC-GAAATGCG-------ACGT--TG-------------T--TT--CA--ACGT-------------TGATGTGCCTGCTGGG-TAGTtgatggggtgggggaggaggggcaacatgtctttcttaactttcatattaattttgttttcccatccagac
gi|7 : --AGGGAAAAGCAATTTTATGTAAGCAAATTATATATTCTGTAATAAAA--------GA-TAC-ACATA-AC-TTTT-ATTT--AGAATAAAATCGCTAATGAGATACATGAATTATGAAACGTATCCAGA--------AATATTTCAATCATAATTTACA------AT-AAATTCTCAAGTTA-----CA--TTTTTAATTTGTGATTATGATTTTTTTTATTGA-TTTTAGAATGTGT-ACTTCCTAGTAG--TCTTATGGCAACTGAGAGCAGTAT-AGGTTTAATT----ATTGCGTCTACAATACCCCTGGAATATGTCCCTC-AAAGAGCT---GGAGGAGGTGGCCGAAGGCGTTGTGTTT-A-AAAACAAAATATGTTGT-A-ACCGTTGAAAATCCTTTGAAAAAAA-TGTTTTAATAT------AAT--ATCTTGACTAGAGAAAATTATTTATTAGAGTTAAATGAATATcaattgaaaataaacttgccacgaactctgaccatctaagtatattt
gi|4 : TATGAAAAATATCCAGA--------AATATTAGAATCATAATCTACATGTACAAT-AAATTCTCAAATTAAACTCAA--TTTT--ATT-GTGATTATGATTTTTTTTATTGA-TTATAGAATGTAT-ACTTCCTAGCAG--TCCTATGGCAGCTGAAAGCAGCAT-AGATTTAATTCAACATTGTG---A-AATA--CCTGAAATATATCCCTG-AAAGAACTGGAGGAGGAGGTGGCTGAAGGCTTTGTGTTT-G-AAAAAAATAT-TGATGT-A-ACCGTTGACAATCCTTGGA-AAAAA-TAGTCTAATATACTAGTAATCAATCTTGACAGGAGAAAATCATCTGTTAGGG-TAAATGAATGTTGTGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATCTTTAA-----ATTGACATTATATT-----GAACCCATGAG-AAAA--TT------T------TACCTT-CATGTACATTTTCAAATGCACTGAACTACATATCACTGTT-TTA-GTCATGACT-----AAATTTTAT-ACAGTTTCATCA-TCATTATTTATTGTCA-AT---TAAGTTTAAT-TTTTGTATTGAGAAATAGCACTAATTATTGTTAAGGGGCTT-AAAGAGATTCAAAGACATTTGAGAATGAAGGAATGTAGGAAGGGAAATTAGCAAGTGTGAATCCA-TTTA--A-----AAA-TAAT-TACTCAG
gi|8 : TTCAAACTGACA--------ATAA-----AT-----------T-----AAATCCATGAG-AAAATTCTAATGAACAAGTTTTACCTTGCATGTACATTTATAAATGCACTAAACTATGAATCACTGTTGTTAT---------------AA--TTAT-AAAGTTTCGTTATTCAT--TTTGTTATCAGATGAGTA--TTTAATATTTTTTAT---AAGATAG-ACTAATTA-TAGTAAAGGT--T---AGCAATT-ATT-GTATTTA-GAATCGAGGAaatgacctagagaaccaagaaacggagtatacgtaataacgactcctattcagagtggacgtaaggaggcaacgtcatgattcgatgtcggttcaattaacaaaatcaaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncgattcaacgttgaattccgacgttgtttcgacgtcatcgacctcggttcaattaactaaatcaaacatctttcaacgtcatttcatcgtcgaaatacaacgatatacgttggttcaaagttgaaatccaatgttgtg
gi|8 : tGT------A-TCTATAAGGTTCAATGTAACATATTTAATACCCTGGTACCTTTTTTTCAATCTTATTTCAGA------GT--CG-CATCAACATCATG-TTTATTGACGT----tttcaacattatgttgaccatttttcagcatctactattaactttgcagtatctataaggttcaatgtaacatatttaataccctggtacctttttttcaatcttatttcagagtcgcatcaacatcatgtttattgacgttgaatcaacgtcatatttcaa
gi|4 : tttcaaactgacaataaattaaatccatgagaaaattctaatgaacaagttttaccttgcatgtacatttataaatgcactaaactatgaatcactgttgttataattataaagtttcgttattcattttgttatcagatgagtatttaatattttttataagatagactaattatagtaaaggttagcaattattgtatttagaatcgaggatttcaacattatgttgaccatttttcagcatctactattaactttgcaTCCTATTC-AGAGTGGACGTAAGG-AGGCAACGTCATG-ATT--CGATGT-----CGGTT--CAATT-AACAAAAT---C--AA-----ANNNNNN-NNNN--N---N--------NNNNNNN---------NNNNN-----------NNNNNNNNNN---------NNNNNNNNNNNNNNNNNNNNNNNNN-N-NNNNNNNNNNN--NNNNNNNNNNNNN---NNNNN-CG--ATT----CAACGTT-GAATTCCG-------ACGT--TG-------------T--TT--CG--ACGTtgaatcaacgtcatatttcaa
gi|4 : tatgaaaaatatccagaaatattagaatcataatctacatgtacaataaattctcaaattaaactcaattttattgtgattatgattttttttattgattatagaatgtatacttcctagcagtcctatggcagctgaaagcagcatagatttaattcaacattgtgaaatacctgaaatatatccctgaaagaactggaggaggaggtggctgaaggctttgtgtttgaaaaaaatattgatgtaaccgttgacaatccttggaaaaaatagtctaatatactagtaatcaatcttgacaggagaaaatcatctgttagggtaaatgaatgttgtggnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatctttaaattgacattatattgaacccatgagaaaattttaccttcatgtacattttcaaatgcactgaactacatatcactgttttagtcatgactaaattttatacagtttcatcatcattatttattgtcaattaagtttaatttttgtattgagaaatagcactaattattgttaaggggcttaaagagattcaaagacatttgagaatgaaggaatgtaggaagggaaattagcaagtgtgaatccatttaaaaataattactcagaatgacctagagaaccaagaaacggagtatacgtaataacgacATG-ACGT--CG-AAACAACGTC-GG-AAT-TCAACGT----catcgacctcggttcaattaactaaatcaaacatctttcaacgtcatttcatcgtcgaaatacaacgatatacgttggttcaaagttgaaatccaatgttgtg
gi|8 : tatgaaaaatatccagaaatattagaatcataatctacatgtacaataaattctcaaattaaactcaattttattgtgattatgattttttttattgattatagaatgtatacttcctagcagtcctatggcagctgaaagcagcatagatttaattcaacattgtgaaatacctgaaatatatccctgaaagaactggaggaggaggtggctgaaggctttgtgtttgaaaaaaatattgatgtaaccgttgacaatccttggaaaaaatagtctaatatactagtaatcaatcttgacaggagaaaatcatctgttagggtaaatgaatgttgtggnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatctttaaattgacattatattgaacccatgagaaaattttaccttcatgtacattttcaaatgcactgaactacatatcactgttttagtcatgactaaattttatacagtttcatcatcattatttattgtcaattaagtttaatttttgtattgagaaatagcactaattattgttaaggggcttaaagagattcaaagacatttgagaatgaaggaatgtaggaagggaaattagcaagtgtgaatccatttaaaaataattactcagaatgacctagagaaccaagaaacggagtatacgtaataacgactcctattcagagtggacgtaaggaggcaacgtcatgattcgatgtcggttcaattaacaaaatcaaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncgattcaATG-ACGT--TG-ATTCAACGTCAAcgacctcggttcaattaactaaatcaaacatctttcaacgtcatttcatcgtcgaaatacaacgatatacgttggttcaaagttgaaatccaatgttgtg
gi|3 : tttcaaactgacaataaattaaatccatgagaaaattctaatgaacaagttttaccttgcatgtacatttataaatgcactaaactatgaatcactgttgttataattataaagtttcgttattcattttgttatcagatgagtatttaatattttttataagatagactaattatagtaaaggttagcaattattgtatttagaatcgaggatttcaacattatgttgaccatttttcagcatctactattaactttgcagtatctataaggttcaatgtaacatatttaataccctggtacctttttttcaatcttatttcagagtcgcatcaacatcatgttta-ACGT--TG-AAACAACGTC--GCATT-TCGACGTTGAAATGAC-GTCGA------AAGATGTTT--G-----------AT-TTTG--T---TAATTGAACCGACG-----------TCGAA-----------ATCTGACG-T---------TG---AAACGTCGGATTTCAACGTT-G---------------AATCAA----CG---TT-----G-TATT---TCGACGTT-GAAAT--G-------ACGT--TG-------------atttcaa
gi|9 : gacgtctatcatatgacaacttggtgaattgaagttttcgggaaacagggaagagctgctaaaggtaaacaaattatatacactgtaataaaataataaaagatagatataatattttatttaaaatgaaattgctaatagatattatgaaaaataccagaaatattagaatcatgatctacaataaattccgaaattaaacttaattttttattgtgattatgatttttattgatttttagaatgtgtaacttcctagcagttcatggcaactgaaagcagcatagatttaattccctgaaatatatcccagaaagaactggaggaggagatggctgaaggctttgtgttgaaaaaaaaatctgttgtaggccgttgacaatccttggaaaaaatattctaatatacttgtaatcaatcttgactggagaaaattatctgttagggtaaatgaatgtcgtggnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatctttaattgacattaaattgaacccataagaaaaaagctatgaaactaatttacctacatgtacattttaaaatgaattgaactacgtatcacttttgttatattttgctatgcaaaattataacagtttcaatattcattttattgtcgttatttaatctttttatgaaataaccaattattgttaaggggtgagagatattcaaaaacttaaatgaaggaagttagattagcagttgtattttaatgttcaattgatatactcaatacttttttcaaccttattcagagtgcacgttgaaatcaacgccagatttcgacgtcggttcagttaacaaaatcaaacatcttt-ACGT--TA-AAACAACGTC--GCATT-TCGACGTTGAAATGAC-GTTGA------AAGATA--TTTGATTTTGATAA-------T--TGAAC--------CGACGT-----------CGAA-----------ATCTGACG-T---------TGACACAACATTGGATTTCAACTTT-G--------AACC--AA--CGTATATCG---TT-----G-TATT---TCGACGAT-GAAAT--G-------ACGT--TG-------------tgatgtgcctgctgggtagtcaattgaaaataaacttgccacgaactctgaccatctaagtatattt
gi|9 : acgttgaattccgacgttgtttcgacgtcatcgacctcggttcaattaactaaatcaaacatctttTCAACGTCA----TT-TCATCGT--------------------CGAAATA--C---A-----ACGATATACGTTGGT---T--------CAAAGTT-----------GAA-----------ATCCAATG-T---------TGTGTCAACGTCAGATTTCGACGTC-GGTTCAATTATCA--AAATCAAATATCT---TTCAA-CGTCATT---TCAACGTC-GAAATGCG-------ACGT--TG-------------T--TT--TA--ACGTTGTA--TCAACGTTGATGTGCCTtgtatcaacgttgatgtgcct
gi|17 : acgttgaattccgacgttgtttcgacgtcatcgacctcggttcaattaactaaatcaaacatcttAACGT-C-AT--T---T--------CAACGT-----------CGAA-----------ATGCGAC-CT---------TGTTTCAACGT
gi|4 : --T---T--------CAACGTT-----------GAA-----------TTCCGACG-T---------TGTTTCGACGTCA----TCGACCTC-GGTTCAATTAACT--AAATCAAACATCT---TTCAA-CGTCATT---TCATCGTC-GAAATACAACGATATACGT--TG-------------G--TT--CA--AAGTTGAAATCCAATG-T--TGTG
gi|9 : tatgaaaaatatccagaaatattagaatcataatctacatgtacaataaattctcaaattaaactcaattttattgtgattatgattttttttattgattatagaatgtatacttcctagcagtcctatggcagctgaaagcagcatagatttaattcaacattgtgaaatacctgaaatatatccctgaaagaactggaggaggaggtggctgaaggctttgtgtttgaaaaaaatattgatgtaaccgttgacaatccttggaaaaaatagtctaatatactagtaatcaatcttgacaggagaaaatcatctgttagggtaaatgaatgttgtggnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatctttaaattgacattatattgaacccatgagaaaattttaccttcatgtacattttcaaatgcactgaactacatatcactgttttagtcatgactaaattttatacagtttcatcatcattatttattgtcaattaagtttaatttttgtattgagaaatagcactaattattgttaaggggcttaaagagattcaaagacatttgagaatgaaggaatgtaggaagggaaattagcaagtgtgaatccatttaaaaataattactcagaatgacctagagaaccaagaaacggagtatacgtaataacgactcctattcagagtggacgtaaggaggcaacgtcatgattcgatgtcggttcaattaacaaaatcaaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncgaCAACGTCGCATTTCGACGTT-G----AAATGACGTTGAA--AGATATTTGATTTTGA-TA--ATTGAACCGACGTC-GAAATCTG-------ACGT--TGACACAACATTGGAT--TT--CA--ACTTTGAA--CCAACG-T
gi|12 : acgttgaattccgacgttgtttcgacgtcatcgacctcggttcaattaactaaatcaaacatctttcaacgtcatttcatcgtcgaaatacaacgatatAATATAT---TT-AA-CG-TCTT---TTCACGTCCGAAATGCG-------A-AT--TG-------------T--TT--TATAACGATGGA----------AATGTGCCTGCTGGGT--GTGTTCGTTCTCGTTAAGTCCttttaacgttgtatcaacgttgatgtgcct
gi|8 : TTT---TTCAATCT-TATT---TCAGAGTC-GCA-T-CA-------ACATCATG-------------T--TTATTG--ACGTTGAA--TCAACG-TCATATtgtatt
gi|17 : tttcaaactgacaataaattaaatccatgagaaaattctaatgaacaagttttaccttgcatgtacatttataaatgcactaaactatgaatcactgttgttataattataaagtttcgttattcattttgttatcagatgagtatttaatattttttataagatagactaattatagtaaaggttagcaattattgtatttagaatcgaggatttcaacattatgttgaccatttttcagcatctactattaactttgcagtatctataaggttcaatgtaacatatttaataccctggtaccttAA-CGTCATT---TCAACGTC-GAAATGCG-------ACCT--TG-------------T--TT--CA--ACGTttcaa
gi|17 : -CG-CATT---TCGACGTT-GAAAT--G-------ACGT--T
gi|4 : ACGTC-GAAA--CA-------ACGT--CG-------------GAATT--CA--ACGTTGAA--TCaccttgtttcaacgt
gi|8 : tatgaaaaatatccagaaatattagaatcataatctacatgtacaataaattctcaaattaaactcaattttattgtgattatgattttttttattgattatagaatgtatacttcctagcagtcctatggcagctgaaagcagcatagatttaattcaacattgtgaaatacctgaaatatatccctgaaagaactggaggaggaggtggctgaaggctttgtgtttgaaaaaaatattgatgtaaccgttgacaatccttggaaaaaatagtctaatatactagtaatcaatcttgacaggagaaaatcatctgttagggtaaatgaatgttgtggnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatctttaaattgacattatattgaacccatgagaaaattttaccttcatgtacattttcaaatgcactgaactacatatcactgttttagtcatgactaaattttatacagtttcatcatcattatttattgtcaattaagtttaatttttgtattgagaaatagcactaattattgttaaggggcttaaagagattcaaagacatttgagaatgaaggaatgtaggaagggaaattagcaagtgtgaatccatttaaaaataattactcagaatgacctagagaaccaagaaacggagtatacgtaataacgactcctattcagagtggacgtaaggaggcaacgtcatgattcgatgtcggttcaattaacaaaatcaaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncTT-GAAATATG-------ACGT--TG-------------A--TT--CA--ACGTC-AA--TAAACA-TGATGTcatcgacctcggttcaattaactaaatcaaacatctttcaacgtcatttcatcgtcgaaatacaacgatatacgttggttcaaagttgaaatccaatgttgtg
3 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|15 ): GGAATTCTTTTAGAGAGAGTAACTATCTTCAACTCAACATACATGTATATATTTAATT
Unaligned ( gi|16 ): CTGGGAAATAAGCTTACGATCGACTCGAGCTGTCATGGGTATGTATAT
Unaligned ( gi|18 ): GAGAAAAAGTTAATGAACTAATTTTACCTTC
Alignments
lowQualScore : 222 222222 1 1 111 11 1 333333333 1 1 11 2222222 222 11 11 11 11 111 1111 11 111 1111 111111 1111 11 1 11 2 2 2 33 111111 1 22222222 111111 2222 11 11 1 1 1 11111 111 1 7777777777777777777777777777777777777777777777777777777777777777777777 1 1 111111 11 11 22 111 11 111 11 1111 11 111 22 55555555 1 33333333 333 1 8888888888 99999999999999999999999 111 111 2222 77777777777777777777777777777777777777777777777777777777777777777777777777777 333333333333 4444444444444444 22222 33333333333333333 11111 2222222 222222222222222 11 11
lowQualScore : 000 2 888888 0 0 777 3 11 0 3 1 8 5 8 1 8 0 0 3 8 666666666 0 8 8 8 8 8 8 0 0 0 0 8 8 66 5555555 0 8 999 8 6 1 11 99 8 11 1 11 99 333 1111 11 8 1 0 8 666 8 2222 22 0 999999 1 0000 5 33 1 7 3 66 3 3 3 3 00 3 999999 1 7777 00000000 5 666666 5 5 1 3333 5 1 7 55 0 5 5 5 55 2 4 5 1 2 55 0 00000 222 1 5 5 8 1 5 5 1 5 5 0 1 1 8 2 7777777777777777777777777777777777777777777777777777777777777777777777 11 1 6 8 8 6 3 6 7 3 6 0 1 1 1 1 666666 1 8 1 11 8 11 11 88 444 11 55 777 22 3 4444 11 2 111 99 22 55555555 0 55555555 222 0 0 3 4444444444 3 3 11111111111111111111111 888 6 000 6 1111 00000000000000000000000000000000000000000000000000000000000000000000000000000 1 5 2 0 888888888888 2222222222222222 3 5 3 33333 5 4 11111111111111111 11111 8888888 66 888888888888888 44 66 88 4
lowQualScore : ... . ...... . . ... . .. . . . . . . . . . . . . ......... . . . . . . . . . . . . . .. ....... . . ... . . . .. .. . .. . .. .. ... .... .. . . . . ... . .... .. . ...... . .... . .. . . . .. . . . . .. . ...... . .... ........ . ...... . . . .... . . . .. . . . . .. . . . . . .. . ..... ... . . . . . . . . . . . . . . . ...................................................................... .. . . . . . . . . . . . . . . . ...... . . . .. . .. .. .. ... .. .. ... .. . .... .. . ... .. .. ........ . ........ ... . . . .......... . . ....................... ... . ... . .... ............................................................................. . . . . ............ ................ . . . ..... . . ................. ..... ....... .. ............... .. .. .. .
lowQualScore : 000 0 888888 0 0 555 2 22 0 2 0 0 6 0 0 0 8 8 2 0 222222222 0 0 0 0 0 0 0 8 8 8 6 0 0 88 4444444 8 0 000 0 4 0 00 00 0 00 0 00 00 888 8888 22 0 0 8 0 111 0 6666 00 8 666666 8 4444 2 00 7 3 3 55 7 0 7 7 77 0 222222 4 7777 77777777 0 444444 0 0 4 9999 7 4 1 77 1 7 0 7 77 0 3 0 4 1 44 6 11111 111 4 7 7 3 7 7 7 0 7 0 8 0 0 0 0 0000000000000000000000000000000000000000000000000000000000000000000000 66 0 0 0 0 7 2 7 5 2 7 0 4 4 0 0 666666 0 0 0 00 0 66 00 44 000 00 88 555 55 2 8888 00 5 222 00 00 00000000 8 88888888 555 0 8 2 7777777777 2 2 00000000000000000000000 888 7 222 7 7777 77777777777777777777777777777777777777777777777777777777777777777777777777777 0 7 9 1 666666666666 3333333333333333 0 0 4 66666 2 4 11111111111111111 11111 9999999 11 666666666666666 77 00 00 0
consensus : NNNNACATGTACGCGTAGCATTATTA------TATCAGAACAAAT-TTCAGTG-AATGACTGCAAATTGT---CAAGTGTCAGA-ATGGAAAGAA-TAGAAAATTGGATGACTTTTCGAAGTACTCGTAAATTAGTATTGTTTTAAATTTA-TTCCATTATTT-ATTAAAGATGGGG-ATTATCTTATCCTTATGAAATATTTTTACAA-TGTGGAAGAATGAAAATATTTCAT----ATAATATATCAA-TAAGA-T-AAATTA-CAAAA-T-GAGG-CAGACTGTGTAAAGACATTTTTTAG-T-GGTGGTGATGGTTG-GTG-GTTGTAACT-GTAAGTTACATGTCTCCA-TATCTTTTT--AAA-TTTTGTTTT-CCATACA--GACGTTTATAA--AATGC-CATGATGGGGTG-GGGAGGGA-GGTGGGGGTAACATGTC-TTCTTAACTTTCATATTTAATTTTGTTTT-CCATCCAGACAGACGTCTA-TCATATGCCATGTTGGTGAAAATGAAGTGTTTTTGGGGAAANAACAGGGAAAAGCNGCTAAAGGTAAACA-ATTATATACACTGTAATAAAATAATAAAAGGATAGA-TATNA-CATTTTA-TTTAAAA--TGAAATTGCTAATGANATA------TT-ATGAAAAATATCCAGA--------AATATTAGAATCATGATCTACA------ATAAATTCTCAAATTAAACTTAATTTT-A-ATT-GCGATTATGATTTT--TTATTGATTTT-AGAATGTGTA-CTTCCTAGCAG--TCCTATGGCAACTGAAAGCAGCAT-AGATTTANTTCAACATTGTG---A-AATA--CCTGAAATATATCCCTG-AAAGAACTGGAGGAGGAGGTGGCTGAAGGCTTTGTGTTT-G-AAAAAAAAATNTGTTGT-A-ACCGTTGACAATCC-TTGGAAAAAATATTCTAATATACTAGTAATCAATCTTGACAGGAGAAAATTATCTGTTAGGG-TAAATGAATGTTGTGGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTATCTTTAAATTGACANNNNATCTTTAAATTGACATTAA-A-TTGAACCCATGAG-AAAAAGCTAATG-AACTAATTTTACCTT-CATGTACATTTTTAAATGNACTGAACTACGTATCACTTTTGTTATATTTTGCTATG-CAAAA--TTAT-ACAGTTTCATCATTCAT--TTTATTGTCA-AT---TA--TTTAATCTTTTTTAT---GAAATAG-ACTAATTATTGTTAAGGGG--T-AGAGA-NATTCAAA-ACATTTG-GAATGAAGGAAGTTAGG-----AAATTAGCAGTTGT------A-TTTAATG-TTCAAT-TAATATACTCAATAC----------TTTTTTCAATCTTATTTCAGAGT---------------------G-ACGTT--G-AAT--CAA-CGTC-A-GATTTCGACGTCA-CGGC--TCGGTT------A-CAAAATACAAACGA-ATCT---------NTT---TCAACG-T----------TCGAAATCCGACG-TTGTTTCGACGTCGGA--------TTTCGACGTC--------------GGTTCAATTAACAAAATCAAACATCTT-TCAACGTC---ATTTCAACGTC-G-----------------AAATG-----CG-------ACGTTGTTTCA--ACGTCGAA--TCAACG-TGATGTGCCTGCTGGGTTAGTGNNCGTTCTNGNTAAGTCC
Reference ( family-895 ) : NNNNACATGTACGCGTAGCATTATCA------TATCAGAACAAAT-TTCAGTG-AATGACTGCAAATTGT---CAAGTGTCAGA-ATGGAAAGAA-TAGAAAATTGGATGACTTTTCGAAGTACTCGTAAATTAGTATTGTTTCANATTCA-TTCCATTATTT-ATNAAAGATGGGG-ATTATCTTATCCTTATGGAATATTTTTACAA-TGTGGAAGAATGAAAATATTTCAT----ATAATATATCAA-TAAGA-T-AAATTA-CAAAA-T-GAGG-CAGACTGTGTAAAGACATTTTTTAG-T-G-TGGTGATGGTTG-GTG-GTTGTAGCT-GTAAGTTACATGTCTCCA-TATCTNTTT--AA--TTTTGTTTT-CCATACA--GACGNTTATAA--AATGC-NATGATGGGGTG-GGGAGGGA-GGTGGGGGTAACATGTC-TTCTTAACTTTNATATTTAATTTTGTTTT-CCATCCAGACAGACGTCTA-TCATATGCCATGTTGGTGAAAATGAAGTNTTTTTAGGGAAANAACAGGGAAAAGCGGCTAAAGGTAAACANATTATATACACTGTAATAAAATAATNAAAGAATAGAATATAAACATTTTAATTTAAAAAATGAAATTGCTAATGATATA------TT-ATGAAAAATATCCAGA--------AATATTAGAATCATGATCTACA------ATAAATTCTCAAATTAAACTTAATTTT-A-ATT-GCGATTATGATTTT--TTATTGATTTT-AGAATGTGTA-CTTCCTAGCAG--TCCTATGGCAACTGAAAGCAGCAT-AGATTTAATTCAGCATTGTG---A-AATA--CCTGAAATATATCCCTG-AAAGAACTGGAGGAGGAGGTGGCTGAAGGCTTTGTGTTT-G-AAAAAAAAATATGTTGT-A-ACCGTTGANAATCC-TTGGAAAAAATATTCTAATATACTAGTAATCAATCTTGACNGGAGAAAATTATCTGTTAGGG-TAAATGAATGTCGTGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTCAAACTGACANNNAATCTTTAAATTGACATT-A-A-TTGAACCCATGAG-AAAAAGCTAATG-AACTAATTTTACCTT-CATGTACATTTTTAAATGCACTGAACTACGTATCACTNTTGTTATATTTTGCTATG-CAAAA--TTAT-ACAGTTTCATCATTCAT--TTTATTGTCA-AT---TA--TTTAATCTTTTTTAT---GAAATAG-ACTAATTATTGTTAAGGGG--T-AGAGA-NATTCAAA-ACATTTG-GAATGAAGGAANNTAGGAAGGGAAATTAGCAGNTGT------A-TTTAA-G-TTCAAT-TAATATACTCAATACCCTGGTACCTTTTTTTCAATCTTATTTCAGAGT---------------------G-ACGTC--G-AAN--CAA-CGTC-A-GATTTCGACGT-A-CGGC-GTCGATT------A-CAAAATACGAACGA-ATCT---------NTT---TCGACG-T----------TCGAAATCCGACG-TTGTTTCAACGTCGGA--------TTTCGACGTC--------------G-TTCAATTAACNAAATCAAATATCTT-TCGACG-C---ATTTCGACGTC-G-----------------AAATG-----CG-------ACGTTGTTTCA--ACGTTGAA--TCAACG-TGATGTGCCTGCTGGGTTAGTGTTCGTTCTCGTTAAGTCC
gi|1 : ACATGTAC---TAGCATTATTACATGTATATCAGGACAAAT-TGCAGTG-AATAACTGCAAATTGT---CAAGTGTCAGA-ATGGAAAGAA-TAGAGAAGTGGATGACTTTTCGAAGTACTCATAAATTAGTATTGTTTTAAATTTA-TTCCATTATTC-ATTAAAGATTGGG-ATTATTTTATCCTTATGAAATACTTTTATAA-TGTGGAAGAATGAAAATATTTCATTTTAATAATATATCAAATAAGA-T-AAATCA-CAAAA-T-GGGA-C---CTGTGTAAAGACATTTCT-AG-T-G---GTGATAGTTACATG-GATGTAACT-GTAA---ACATGTCTGCA-TATTTTTTT--AAA-TTTTGTTTT-CCATACA--GACGTTTATAA--AATGC-CATGATGGGGTG-GGGAGGGA-GGTGGGGGTAACATGTC-TTCTTAACTTTCATATTTAATTTTGTTTT-CCATCCAGAC----GTCTA-TCAAATGCCAAGTTCGTGAAAATGAAGTGTT---GGGGAAATAA--GGGAAAAGCTGCTAAAGGTAAACATATTATATACACTGTAATAAAATAATAAAAGG-TAGA-TATCA-CATTTTA-TTTAAAA--TGAAATTGCTAATGAGATA------TT-ATGGAAAATATCCAGATTTGCAGAAATATTAGAATCATGATCTACA------ATAACTTCTCAAATTAAACCTCATTTT-A--TT-GTGGTTATGGCATT--TTATTGATTTT-AGAATGTGTA-CTTCCTAGCAG--TCCTATGGTAACTGAAAGCAGCAT-AGATTTATTTCAACATTGTG---A-AATA--CCTGAAATATATCCCTG-AAAGAACTGGAGGAGGAGGTGGCTGAAGGTTTTGTGTTT-G-AAAAAAAAATCTGTTGT-A-ACCGTTGACAATCC-TTGG-AAAGATATTTCAATATACTAGCAATCAATCTTGACAGGAGAAAATTATATGTTAGGG-TAAATGAATGTTGTGGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTATCTTTAAATTGACA--------TTA-----------A-A-TTGAACCCATGAG-AAAAAGCTAATA-AAC------CATCTC-CATGTACATTTTTAAATGAATTGAACTATGTATCACTTTTGTTATATTTTGCTTTG-CAAAA--TTAT-ACAGTTTCATCATTCGT--TTTATTGTC--AT---TA--TTTAATCTTTTTTAT---GAAATAG-ACTAATTATTATTAAGGGG--T-AAAGA-AATTCAAA-ACATTT--GAATGAAGGAAGTTAGG-------ATTAGCAATTGT------A-TTTAATG-TTCAAT-TCATATACTCAGTAC-----------TTTTTCAATCTTATTTTAGAAT---------------------G-ACGTT--G-AAT--CAA-CGTCAA-GATTTCGACGT-A-TGGCTGTCAATT------A-CAAAATACGAACAACATCT---------CTT---TCAACGTT----------TCGAAATTCGACGCTTGTTTCAACGTCAGA--------TTTCGACGTC--------------G-TTCAATTAACAAAATCAAACATCTT-TCAACG-C---ATTTCAACGTC-G-----------------AAATG-----CG-------ACGTTGTTTCA--ACGTTGAA--TCAATG-TGATGTGCCTGCTGGGTTAGTAGGCGTTC-AGATAAATCC
gi|10 : tacaA-T-AAATTAACAAAC-T-GAGG-CAGACTGTGTA--GACATTTTTTAGGT-GGTGGTGATGGTTG-A-A-GTTGTAACT-GTAA---ACATGTCTCCA-TATTTTTTTTTAA--TTTTGTTTTTCCATACA--GACGTTTATAA--AATGC-CATGATGGGGTG-GGGGAGGA-----GGGGCAACATGTCTTTCTTAACTTTCATA-TTAATTTTGTTTTCCCATCCAGACatttgcct
gi|11 : GGGG-ATTATCTTGTCCTTATGAAATACTTTAAAAAATGTGAAAGAATGAAAATATTTCAT----ATA
gi|12 : AATATATT-T-AACG-T---CTTTTCACGTCCG-----------------AAATG-----CG-------A-ATTGTTTTATAACGATGGA----------AATGTGCCTGCTGGGT--GTGTTCGTTCTCGTTAAGTCCtcttgatagtccatcgggaaccgatgatgactttgtctatggactcagcgatgatgatgaatgtggct
gi|13 : -ATGGAAAGAA-TAGAAAATTGGATGACTTCTCTAAGTAATCATAAATTAGTATTGTCTTAAATTTA-TTCCATTATTT-ATTAAAGATGtgtatt
gi|14 : gggtgagACATGTACGCGTAGCATTATCA------TATCAGAACAAAT-TTCAGTC-AATGACTGAAAATTGT---CAAGTGTCAGA-
gi|17 : cctACGTC---ATTTCAACGTC-G-----------------AAATG-----CG-------ACCTTGTTTCA--ACGT
gi|18 : aGAG-AAAAAGTTAATG-AACTAATTTTACCTT-C
gi|2 : TAGCATTATTA------TATCAGAACAAAT-TTCAGTG-AATGACTGCAAATTGT---CAAGTGTCAGA--TGGAAAGAA-TAGAAAATTGGATGACTTTTCGAAGTACTCATAAATAAGTATTGTTTTAAATTTA-TTCCATTATTT-AATAAAGATGGGGGATTATCTTATCCTTATGAAATATTTTTACAA-TGTGGAAGAATGAAAATATTTCAT----ATA---TATCAA-TAAGA-TCAAATTA-CAAAA-TTGAGG-CAGACTGTGTAAAGACATTTTTTAG-T-GGTGGTGATGGT---GTGTGTTGTAACT-GTAAA--ACATGTCTCCAATAT-TTTTT--AAAATTTTGTTTT-CCATACA--GACGTTTATAA--AATGC-CATGATGGGG-----GAGGGG-GA---GGGTAACATGTC-TTCTTAACTTTCATATTTAATTTTGTTTT-CCATCCAGAC----GTCTAATCATATGCCATGTTGGTGAAAATGAAGT---TTTGGTGAAACAA--GGGAATAGCTGCTAAAGGTAAACAGATTATATACACTGTAATAAAATAATAAAAGA-TAGA-TATAA-CATTTTA-TTTAAAA--TGAAATTGCTAATGATATA------TT-ATGAAAAATATCCAGA--------AATATTAGAATCATGATCTACA------ATAAATTCTCAAATGAAACTTAATTTT-A--TT-GTGATAATGATTTT--TCATTGATTTT-AGAATGTGTA-CTTCCTAGCAG--TCCTATGGCAACTGAAAGCAGCAT-AAATTTAATTCAACACTGTG---A-AATA--CCTGACATATATCCCTG-AAAGAACTGGAGGAGGAGGTGGCTGAAGGCTTTGTGTTT-GAAAAAAAAAATCTGTTGT-A-ACCTTTGACAATCC-TTGG-AAAAATATTCTAACATACTAGTAATCAATCTTGACAGGAGAAAATTATCTCTTAGGG-TAAATGAATGTTGTGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATCTTTAAATTGACATTAA-A-TTGAACCCATGAG-AAAAAGCTAATG-AACTAATTTTACCTT-CATGTACATTTTTAAAAG-------------ATCACTTTTGTTCCAGTTTGCTATG-CAAAA--TTAT-ACAGTTTCATC-TTCAT--TTTATTGTC--AT---TA--TTTAATCTTTTT
gi|3 : ataatactacGACGTCTA-TCATATGACAACTTGGTGAAT-TGAAGT---TTTCGGGAAA---CAGGGAAGAGCTGCTAAAGGTAAACAAATTATATACACTGTAATAAAATAATAAAAGA-TAGA-TATAA-TATTTTA-TTTAAAA--TGAAATTGCTAAT-AGATA------TT-ATGAAAAATA-CCAGA--------AATATTAGAATCATGATCTACA------ATAAATTCCGAAATTAAACTTAATTTT-TTATT-GTGATTATGATTTT--T-ATTGATTTTTAGAATGTGTAACTTCCTAGCAG--TTC-ATGGCAACTGAAAGCAGCAT-AGATTTAATTC--------------------CCTGAAATATATCCCAG-AAAGAACTGGAGGAGGAGATGGCTGAAGGCTTTGTG-TT-G-AAAAAAAAATCTGTTGT-AGGCCGTTGACAATCC-TTGGAAAAAATATTCTAATATACTTGTAATCAATCTTGACTGGAGAAAATTATCTGTTAGGG-TAAATGAATGTCGTGG-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATCTTT-AATTGACATTAA-A-TTGAACCCATAAGAAAAAAGCT-ATGAAACTAA-TTTACCTA-CATGTACATTTTAAAATGAATTGAACTACGTATCACTTTTGTTATATTTTGCTATG-CAAAA--TTATAACAGTTTCAATATTCAT--TTTATTGTC--GT---TA--TTTAATC-TTTTTAT---GAAATA--ACCAATTATTGTTAAGGGG--TGAGAGA-TATTCAAA-A-ACTT--AAATGAAGGAAGTTAG--------ATTAGCAGTTGT------ATTTTAATG-TTCAAT-TGATATACTCAATAC----------TTTTTTCAACCTTA-TTCAGAGT---------------------GCACGTT--GAAAT--CAA-CGCC-A-GATTTCGACGT---CGGT--TCAGTTA-----A-CAAAAT-CAAAC---ATCTTTCAACGTCATT---TCAACG------------TCGAAATACAACG-TTGATTCAACGTTGAAATCCGACGTTTCAACGTCAGATTTCGACGTCGG-TTCAATTAACAAAATCAAACATCTT-TCGACGTC---ATTTCAACGTC-G-----------------AAATG-----CG-------ACGTTGTTTCA--ACGT-------------TGATGTGCCTGCTGGG-TAGT
gi|4 : T-ATGAAAAATATCCAGA--------AATATTAGAATCATAATCTACATGTACAATAAATTCTCAAATTAAACTCAATTTT-A--TT-GTGATTATGATTTTTTTTATTGATTAT-AGAATGTATA-CTTCCTAGCAG--TCCTATGGCAGCTGAAAGCAGCAT-AGATTTAATTCAACATTGTG---A-AATA--CCTGAAATATATCCCTG-AAAGAACTGGAGGAGGAGGTGGCTGAAGGCTTTGTGTTT-G-AAAAAAATAT-TGATGT-A-ACCGTTGACAATCC-TTGGAAAAAATAGTCTAATATACTAGTAATCAATCTTGACAGGAGAAAATCATCTGTTAGGG-TAAATGAATGTTGTGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATCTTTAAATTGACATT-ATA-TTGAACCCATGAG-AA---------------AATTTTACCTT-CATGTACATTTTCAAATGCACTGAACTACATATCACTGTT-TTA------GTCATGACTAAATTTTAT-ACAGTTTCATCA-TCATTATTTATTGTCA-AT---TAAGTTTAAT-TTTTGTATTGAGAAATAGCACTAATTATTGTTAAGGGGCTT-AAAGA-GATTCAAAGACATTTGAGAATGAAGGAATGTAGGAAGGGAAATTAGCAAGTGTGAATCCA-TTTAA------AAA-TAAT-TACTCAcaattgaaaataaacttgccacgaactctgaccatctaagtatattt
gi|4 : TCCTATT-CAGAGT---------------------GGACGTAAGG-AGG--CAA-CGTC-ATGATT-CGATGT---CGGT--TCAATT------AACAAAATCAAANNNN-NNNN---------NNN---NNNNNN-N----------NNNNNNNNNNNNN-NNNNNNNNNNNNNNNN--------NNNNNNNNNN--------------N-NNNNNNNNNNNNNNNNNNNNNNNNN-NNNNNN-C---GATTCAACGTT-G-----------------AATTC-----CG-------ACGTTGTTTCG--ACGTC--A--TCGACgaatgacctagagaaccaagaaacggagtatacgtaataacgactcctattcagagtggacgtaaggaggcaacgtcatgattcgatgtcggttcaattaacaaaatcaaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncgattcaacgttgaattccgacgttgtttcgacgtcatcgacctcggttcaattaactaaatcaaacatctttcaacgtcatttcatcgtcgaaatacaacgatatacgttggttcaaagttgaaatccaatgttgtg
gi|4 : tatgaaaaatatccagaaatattagaatcataatctacatgtacaataaattctcaaattaaactcaattttattgtgattatgattttttttattgattatagaatgtatacttcctagcagtcctatggcagctgaaagcagcatagatttaattcaacattgtgaaatacctgaaatatatccctgaaagaactggaggaggaggtggctgaaggctttgtgtttgaaaaaaatattgatgtaaccgttgacaatccttggaaaaaatagtctaatatactagtaatcaatcttgacaggagaaaatcatctgttagggtaaatgaatgttgtggnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatctttaaattgacattatattgaacccatgagaaaattttaccttcatgtacattttcaaatgcactgaactacatatcactgttttagtcatgactaaattttatacagtttcatcatcattatttattgtcaattaagtttaatttttgtattgagaaatagcactaattattgttaaggggcttaaagagattcaaagacatttgagaatgaaggaatgtaggaagggaaattagcaagtgtgaatccatttaaaaataattactcagaatgacctagagaaccaagaaacggagtatacgtaataacgacT---TCAACG-T----------T-GAATTCCGACG-TTGTTTCGACGTCA------------TCGACCTC--------------GGTTCAATTAACTAAATCAAACATCTT-TCAACGTC---ATTTCATCGTC-G-----------------AAATA-----CAACGATATACGTTGGTTCA--AAGTTGAAATCCAATG-T--TGTGctcggttcaattaactaaatcaaacatctttcaacgtcatttcatcgtcgaaatacaacgatatacgttggttcaaagttgaaatccaatgttgtg
gi|5 : tatgaaaaatatccagaaatattagaatcataatctacatgtacaataaattctcaaattaaactcaattttattgtgattatgattttttttattgattatagaatgtatacttcctagcagtcctatggcagctgaaagcagcatagatttaattcaacattgtgaaatacctgaaatatatccctgaaagaactggaggaggaggtggctgaaggctttgtgtttgaaaaaaatattgatgtaaccgttgacaatccttggaaaaaatagtctaatatactagtaatcaatcttgacaggagaaaatcatctgttagggtaaatgaatgttgtggnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatctttaaattgacattatattgaacccatgagaaaattttaccttcatgtacattttcaaatgcactgaactacatatcactgttttagtcatgactaaattttatacagtttcatcatcattatttattgtcaattaagtttaatttttgtattgagaaatagcactaattattgttaaggggcttaaagagattcaaagacatttgagaatgaaggaatgtaggaagggaaattagcaagtgtgaatccatttaaaaataattactcagaatgacctagagaaccaagaaacggagtatacgtaataacgactcctattcagagtggacgtaaggaggcaacgtcatgattcgatgtcggttcaattaacaaaatcaaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncgaTTA------TATAAGAACAAAAATTCAGTGCAATGACTGCAAATTGTGGTCAAG-GTCAAAGATGGAAAGAAATAGAAAAT-GGATGACTTTTCGACGTACTCGTAAATTAGTATTGTTTCATATTCAATTCC-TTATTTTATGAAAGATGGAG-AT-ATCT-ATC-TTATGGAATATTTTTACAA-TGTGGAAGAATGAAAATATTTCAT----A----ATATCAT-TAAAAAT-AAATTA-CAAAA-T-GAAGACAGACT-TGTAAAGACATTTTT-AG-T-G-TGGTGATGGTTG--TG-GTTG-AGCTTGTAAGTTATATGTCTCCA-TATCTATTT--AA--TTTTGTTTT-CCATACAAGGACGATTATAAACAATGCAAATGATGGGTTGAGGGAG----GGTGGGGGT---ATGTC-TTCTTAACTTTAATATTTAATTTTGCTTT-CCATCCAGACAGACGTCTA-TCAT---TCCTGTTGGTGAAAATGAA-TGTTTTTAGGGAAAAAACAGGGAAAAGCGGCTAAAGGTAAAC--ATCATAAAT-CTGTAA-AAAATAATTAAAGGATAGAATGTCAACATTTTAATTTAAAAAATGAAATTGCTAATGATATA------TTAATGAAAA----------------------TAG--CCATGATCTACA------ATGAA-TCTC-AATTAAACTTAATTTTAA-ATT-GCGAGTATGA-TTT--TTATTGATTTT-AGAA-ATACA-CATCCTAGCAGGATCC-AT-GCAACTGAAAGC-GCATAAGATTTTTTCCAGCA-TGTG---A-AATA---TTGCAATATATCACTGAAAAGAACTGGAGTAGGTGGTGGCTGAAGGCTTTGTGTTTGG-AAAAAAAAATATG-TGTAA-ACCATTGAACATCC-TTTGAAAAACTATTC
gi|6 : GTACTCGTAAATTAGTATTGTTTCATATTCA-TTCCCTTATTT-ATGAAAGATGGAG-ATTATCTTATCTTTATGGAATATTTTTACAA-TGTGGAAGAATGAAAATATTTCAT-------ATATATCAA-TTAAA-T-AAATTA-CAAAATT-GAGA-CAGACTGTGTAAAGACA-TTTTTAG-TGG-TGGTGATGGTT--GTG-GTTGTAGCT-GTAAGTTATATGTCTCCA-TATCTATTT--AA--TTTTGTTTT-CCATACA--GACGATTATAA--AATGC-AATGATGGGGT---TGAGGGAGGGTGGGGGT---ATGTC-TTCTTAACTTTAATATTTAATTTTGCTTT-CCATCCAGACAGACGTCTA-TCAT---TCCTGTTGGTGAAAATGAA-TGTTTTTAGGGAAAAAACAGGGAAAAGCGGCTAAAGGTAAAC--ATCATAAAT-CTGTAA-AAAATAATTAAAGGATAGAATGTCAACATTTTAATTTAAAAAATGAAATTGCTAATGATATA------TTAATGAAAA----------------------TAG--CCATGATCTACA------ATGAA-TCTC-AATTAAACTTAATTTTAA-ATT-GCGAGTATGA-TTT--TTATTGATTTT-AGAA-ATACA-CATCCTAGCAGGATCC-AT-GCAACTGAAAGC-GCATAAGATTTTTTCCAGCA-TGTG---A-AATA---TTGCAATATATCACTGAAAAGAACTGGAGTAGGTGGTGGCTGAAGGCTTTGTGTTT-G-GAAAAAAAATATGTTGT-A-ACCATTGAACATCC-TTGGAAAAACTATTCTAGTc
gi|7 : cAGGGAAAAGCAATTTTATGTAAGCAAATTATATATTCTGTAATAAAA---------GATACA-CATAA-C-TTTTA-TTTAGAA--TAAAATCGCTAATGAGATACATGAATT-ATGAAACGTATCCAGA--------AATATTTCAATCATAATTTACA------ATAAATTCTCAAGTTACATTT----TT-A-ATTTGTGATTATGATTTTTTTTATTGATTTT-AGAATGTGTA-CTTCCTAGTAG--TCTTATGGCAACTGAGAGCAGTAT-AGGTTTAATT----ATTGCGTCTACAATACCCCTGGAATATGTCCCTC-AAAGAGCT---GGAGGAGGTGGCCGAAGGCGTTGTGTTT-A-AAAACAAAATATGTTGT-A-ACCGTTGAAAATCCTTTGAAAAAAATGTTTTAATA------TAAT--ATCTTGACTAGAGAAAATTATTTATTAGAGTTAAATGAATAT
gi|8 : TTCAAACTGACAAT-A-AATTAAATCCATGAG-AAAATTCTAATG-AACAAGTTTTACCTTGCATGTACATTTATAAATGCACTAAACTATGAATCACTGTTGTTAT---------------AA--TTAT-AAAGTTTCGTTATTCAT--TTTGTTATCAGATGAGTA--TTTAATATTTTTTAT---AAGATAG-ACTAATTATAG-TAAAGGT--T-AGCAATTATT-----GTATTTA-GAATCGAGGA
gi|8 : tAACTTTGCAG-TAT------C-TATAA-GGTTCAATGTAACATATTTAATACCCTGGTACCTTTTTTTCAATCTTATTTCAGAGTCGCATCAACATCATGTTTATTG-ACGTT--G-AAT--CAA-CGTC-A-TATTTCAAtttcaacattatgttgaccatttttcagcatctactattaactttgcagtatctataaggttcaatgtaacatatttaataccctggtacctttttttcaatcttatttcagagtcgcatcaacatcatgtttattgacgttgaatcaacgtcatatttcaa
gi|9 : tttcaaactgacaataaattaaatccatgagaaaattctaatgaacaagttttaccttgcatgtacatttataaatgcactaaactatgaatcactgttgttataattataaagtttcgttattcattttgttatcagatgagtatttaatattttttataagatagactaattatagtaaaggttagcaattattgtatttagaatcgaggatttcaacattatgttgaccatttttcagcatctactattACG-T----------T-GAATTCCGACG-TTGTTTCGACGTCA------------TCGACCTC--------------GGTTCAATTAACTAAATCAAACATCTT-TCAACGTC---ATTTCATCGTC-G-----------------AAATA-----CAACGATATACGTTGGTTCA--AAGTTGAAATCCAATG-T--TGTGTC
gi|9 : -ACGTT--G-AATTCCGA-CGTT-G---TTTCGACGTCATCGAC-CTCGGTTCAATTAA-CTAAAT-CAAAC---ATCT-----------T---TCAACG-TCATTTCATCGTCGAAATACAACG-ATAT----ACGTTGG----------TTCAAAGTT--------------G------------AAATCCAATGTTGTGTCAACG-TCAGATTTCGACGTC-GGTTCAATTATCAAAATCAAATATCTTTCA-------ACGTCATTTCA--ACGTCGA-----AATG-CGACGTaacgtcagatttcgacgtcggttcaattatcaaaatcaaatatctttcaacgtcatttcaacgtcgaaatgcgacgttgttttaacgttgtatcaacgttgatgtgcct
gi|9 : -AAT--CAAACATC-----TTTCAACGTCA-TTTC-ATCG--T--------CGAAATAC-AACGATATAC---------GTTGGTTCAAAG-T----------T-GAAATCCAATG-TTGTGTCAACGTCAGA--------TTTCGACGTC--------------GGTTCAATTATCAAAATCAAATATCTT-TCAACGTC---ATTTCAACGTC-G-----------------AAATG-----CG-------ACGTTGTTTTA--ACGTTGTA--TCAACGTTGATGTGCCTtgttttaacgttgtatcaacgttgatgtgcct
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|15 ): GGAATTCTTTTAGAGAGAGTAACTATCTTCAACTCAACATACATGTATATATTTAATT
Unaligned ( gi|16 ): CTGGGAAATAAGCTTACGATCGACTCGAGCTGTCATGGGTATGTATAT
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 222 222222 1 1 111 11 1 333333333 111 1 222 222 22 11 11 111 1111 11 111 1111 111111 1111 2222 1 1 11 1 11 111111 1 22222222 111111 111 1 11 11 1 1 1 11111 111 1 4444444444444444444444444444444444444444444444444444444444444444444444 111111 11 11 22 111 11 111 11 1111 11 111 22 444444444 1 22222222 1 66666666666 77777777777777777777777 11 111 44444444444444444 1 5555555555555555555555 1111 44444444444444444444444444444444 3333333 333333333333333 11 11
lowQualScore : 000 888888 0 0 777 3 11 0 3 1 8 5 8 0 8 0 0 8 666666666 111 8 8 8 8 8 0 0 0 0 8 3 777 0 8 0 8 999 8 1 33 8 11 1 11 8 333 1111 11 8 0 8 666 8 2222 22 0 333333 1 0000 1 5555 1 7 3 6 3 44 3 88 1 999999 1 7777 00000000 5 666666 5 5 1 5 888 5 1 4 55 5 5 5 55 2 4 5 1 1 33 0 00000 222 1 5 5 6 1 5 5 0 5 5 0 1 1 8 0000000000000000000000000000000000000000000000000000000000000000000000 0 6 3 6 7 3 6 8 1 1 1 0 666666 1 8 1 11 8 11 11 88 444 11 55 777 22 3 4444 11 2 111 99 222222222 0 99999999 3 9 0 0 3 55555555555 5 0 77777777777777777777777 11 8 8 666 0 77777777777777777 5 3 3333333333333333333333 7777 1 6 00000000000000000000000000000000 0 1 3 5 2222222 66 5 777777777777777 44 22 66 1
lowQualScore : ... ...... . . ... . .. . . . . . . . . . . . ......... ... . . . . . . . . . . . ... . . . . ... . . .. . .. . .. . ... .... .. . . . ... . .... .. . ...... . .... . .... . . . . . .. . .. . ...... . .... ........ . ...... . . . . ... . . . .. . . . .. . . . . . .. . ..... ... . . . . . . . . . . . . . . ...................................................................... . . . . . . . . . . . . ...... . . . .. . .. .. .. ... .. .. ... .. . .... .. . ... .. ......... . ........ . . . . . ........... . . ....................... .. . . ... . ................. . . ...................... .... . . ................................ . . . . ....... .. . ............... .. .. .. .
lowQualScore : 000 888888 0 0 555 2 22 0 2 4 0 6 0 6 0 8 8 0 222222222 000 0 0 0 0 0 8 8 6 8 0 2 000 8 0 8 0 000 0 4 88 0 00 4 00 0 888 8888 22 0 8 0 111 0 6666 00 8 000000 4 4444 0 0000 7 3 7 7 3 33 3 33 0 222222 4 7777 77777777 0 444444 0 0 4 7 111 7 4 1 77 7 0 7 77 0 3 0 4 0 66 6 11111 111 4 7 7 6 7 7 7 7 7 0 8 0 4 0 0000000000000000000000000000000000000000000000000000000000000000000000 8 7 2 7 5 2 7 8 4 4 0 6 666666 0 0 0 00 0 66 00 44 000 00 88 555 55 2 8888 00 5 222 00 222222222 0 88888888 2 2 0 8 2 77777777777 6 8 22222222222222222222222 00 0 0 888 8 55555555555555555 5 2 5555555555555555555555 0000 3 7 22222222222222222222222222222222 2 3 6 0 5555555 99 0 888888888888888 77 00 55 0
consensus : NNNNACATGTACGCGTAGCATTATTA------TATCAGAACAAAT-TTCAGTG-AATGACTGCAAATTGT---CAAGTGTCAGA-ATGGAAAGAA-TAGAAAATTGGATGACTTTTCGAAGTACTCGTAAATTAGTATTGTTTTAAATTT-ATTCCATTA-TTTATTAAAGATGGGG-ATTATCTTATCCTTATGAAATATTTTTACAA-TGTGGAAGAATGAAAATATTTCAT----ATAATATATCAA-T-AAGAT-AAATTA-CAAAA-T-G-AGACAGACTGTGTAAAGACATTTTTTAG-TGGTGGTGATGGTT--GTG-GTTGTAAC-TGTAAGTTACATGTCTCCA-TATTTTTTTA-AATTTTGTTTT-CCATACA--GACGTTTATAA--AATGC-CATGATGGGGTG-GGGAGGGA-GGTGGGGGTAACATGTC-TTCTTAACTTTCATATTTAATTTTGTTTT-CCATCCAGACAGACGTCTA-TCATATGCCATGTTGGTGAAAATGAAGTGTTTTTGGGGAAANAACAGGGAAAAGCNGCTAAAGGTAAACA-A-TTATATACACTGTAATAAAATAATAAAAGGATAG-ATAT-AACATTTT-ATTT--AAAATGAAATTGCTAATGANATA------TT-ATGAAAAATATCCAGA--------AATATTAGAATCATGATCTACA------ATAAATTCTCAAATTAAACTTAA-TTTT-AATT-GCGATTATGATTTT--TTATTGA-TTTTAGAATGTGT-ACTTCCTAGCAG--TCCTATGGCAACTGAAAGCAGCAT-AGATTTANTTCAACATTGTG---A-AATA--CCTGAAATATATCCCTG-AAAGAACTGGAGGAGGAGGTGGCTGAAGGCTTTGTGTTT-G-AAAAAAAAATNTGTTGT-A-ACCGTTGACAATCC-TTGGAAAAAATATTCTAATATACTAGTAATCAATCTTGACAGGAGAAAATTATCTGTTAGGG-TAAATGAATGTTGTGGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTNNNNNNNNNNNNNNNNNNNATCTTTAAATTGACATTAAATTGAACCCATGAG-AAAAAGCTAATG-AACTAATTTTACCTT-CATGTACATTTTTAAATGNACTGAACTACGTATCACTTTTGTTATATTTTGCTATG-CAAAA--TTAT-ACAGTTTCATCATTCAT--TTTATTGTCA-AT---TA--TTTAATCTTTTTTAT---GAAATAG-ACTAATTATTGTTAAGGGG--T-AGAGA-NATTCAAA-ACATTTG-GAATGAAGGAAGTTA-----GGAAATTAGCAGT-TGT------A-TTTAATGTTCAAT-TAATATACTCAATAC----------TTTTTTCAATCTTATTTCAGAGT---------------------G-ACGT--TG-AATCAA-CGTC-A-GATTTCGACGTCACGGC--TCAATT-A-CAAAATACAAACGACATCT---------NTT---TCAACG-TTCGAAATCCGACG-TTGTTTCGACGTCAGA--------TTTCGAC-------------GTCGGTTCAATTAACAAAATCAAACATCTTTCAACGTCATTTCAACGTC-GAAATGCG-------ACGTTGTTTCA--ACG-TTGAA--TCAACG-TGATGTGCCTGCTGGGTTAGTGNNCGTTCTNGNTAAGTCC
Reference ( family-895 ) : NNNNACATGTACGCGTAGCATTATTA------TATCAGAACAAAT-TTCAGTG-AATGACTGCAAATTGT---CAAGTGTCAGA-ATGGAAAGAA-TAGAAAATTGGATGACTTTTCGAAGTACTCGTAAATTAGTATTGTTTTAAATTT-ATTCCATTA-TTTATTAAAGATGGGG-ATTATCTTATCCTTATGAAATATTTTTACAA-TGTGGAAGAATGAAAATATTTCAT----ATAATATATCAA-T-AAGAT-AAATTA-CAAAA-T-G-AGGCAGACTGTGTAAAGACATTTTTTAG-TGGTGGTGATGGTTG-GTG-GTTGTAAC-TGTAAGTTACATGTCTCCA-TATCTTTTTA-AATTTTGTTTT-CCATACA--GACGTTTATAA--AATGC-CATGATGGGGTG-GGGAGGGA-GGTGGGGGTAACATGTC-TTCTTAACTTTCATATTTAATTTTGTTTT-CCATCCAGACAGACGTCTA-TCATATGCCATGTTGGTGAAAATGAAGTGTTTTTGGGGAAANAACAGGGAAAAGCNGCTAAAGGTAAACA-A-TTATATACACTGTAATAAAATAATAAAAGGATAG-ATAT-NACATTTT-ATTT--AAAATGAAATTGCTAATGANATA------TT-ATGAAAAATATCCAGA--------AATATTAGAATCATGATCTACA------ATAAATTCTCAAATTAAACTTAA-TTTT-AATT-GCGATTATGATTTT--TTATTGA-TTTTAGAATGTGT-ACTTCCTAGCAG--TCCTATGGCAACTGAAAGCAGCAT-AGATTTANTTCAACATTGTG---A-AATA--CCTGAAATATATCCCTG-AAAGAACTGGAGGAGGAGGTGGCTGAAGGCTTTGTGTTT-G-AAAAAAAAATNTGTTGT-A-ACCGTTGACAATCC-TTGGAAAAAATATTCTAATATACTAGTAATCAATCTTGACAGGAGAAAATTATCTGTTAGGG-TAAATGAATGTTGTGGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTATCTTTAAATTGACANNNNATCTTTAAATTGACATTAAATTGAACCCATGAG-AAAAAGCTAATG-AACTAATTTTACCTT-CATGTACATTTTTAAATGNACTGAACTACGTATCACTTTTGTTATATTTTGCTATG-CAAAA--TTAT-ACAGTTTCATCATTCAT--TTTATTGTCA-AT---TA--TTTAATCTTTTTTAT---GAAATAG-ACTAATTATTGTTAAGGGG--T-AGAGA-NATTCAAA-ACATTTG-GAATGAAGGAAGTTA-----GGAAATTAGCAGT-TGT------A-TTTAATGTTCAAT-TAATATACTCAATAC----------TTTTTTCAATCTTATTTCAGAGT---------------------G-ACGT--TG-AATCAA-CGTC-A-GATTTCGACGTCACGGC--TCGGTT-A-CAAAATACAAACGA-ATCT---------NTT---TCAACG-TTCGAAATCCGACG-TTGTTTCGACGTCGGA--------TTTCGAC-------------GTCGGTTCAATTAACAAAATCAAACATCTTTCAACGTCATTTCAACGTC-GAAATGCG-------ACGTTGTTTCA--ACG-TCGAA--TCAACG-TGATGTGCCTGCTGGGTTAGTGNNCGTTCTNGNTAAGTCC
gi|1 : ACATGTAC---TAGCATTATTACATGTATATCAGGACAAAT-TGCAGTG-AATAACTGCAAATTGT---CAAGTGTCAGA-ATGGAAAGAA-TAGAGAAGTGGATGACTTTTCGAAGTACTCATAAATTAGTATTGTTTTAAATTT-ATTCCATTA-TTCATTAAAGATTGGG-ATTATTTTATCCTTATGAAATACTTTTATAA-TGTGGAAGAATGAAAATATTTCATTTTAATAATATATCAAAT-AAGAT-AAATCA-CAAAA-T-G-GGAC---CTGTGTAAAGACATTTCT-----AGTGGTGATAGTTACATG-GATGTAAC-TGTAA---ACATGTCTGCA-TATTTTTTTA-AATTTTGTTTT-CCATACA--GACGTTTATAA--AATGC-CATGATGGGGTG-GGGAGGGA-GGTGGGGGTAACATGTC-TTCTTAACTTTCATATTTAATTTTGTTTT-CCATCCAGAC----GTCTA-TCAAATGCCAAGTTCGTGAAAATGAAGTGTT---GGGGAAATAA--GGGAAAAGCTGCTAAAGGTAAACATA-TTATATACACTGTAATAAAATAATAAAAGG-TAG-ATAT-CACATTTT-ATTT--AAAATGAAATTGCTAATGAGATA------TT-ATGGAAAATATCCAGATTTGCAGAAATATTAGAATCATGATCTACA------ATAACTTCTCAAATTAAACCTCA-TTTT-A-TT-GTGGTTATGGCATT--TTATTGA-TTTTAGAATGTGT-ACTTCCTAGCAG--TCCTATGGTAACTGAAAGCAGCAT-AGATTTATTTCAACATTGTG---A-AATA--CCTGAAATATATCCCTG-AAAGAACTGGAGGAGGAGGTGGCTGAAGGTTTTGTGTTT-G-AAAAAAAAATCTGTTGT-A-ACCGTTGACAATCC-TTGG-AAAGATATTTCAATATACTAGCAATCAATCTTGACAGGAGAAAATTATATGTTAGGG-TAAATGAATGTTGTGGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTT-------------------ATCTTTAAATTGACATTAAATTGAACCCATGAG-AAAAAGCTAATA-AAC------CATCTC-CATGTACATTTTTAAATGAATTGAACTATGTATCACTTTTGTTATATTTTGCTTTG-CAAAA--TTAT-ACAGTTTCATCATTCGT--TTTATTGTC--AT---TA--TTTAATCTTTTTTAT---GAAATAG-ACTAATTATTATTAAGGGG--T-AAAGA-AATTCAAA-ACATTT--GAATGAAGGAAGTTA-----GG--ATTAGCAAT-TGT------A-TTTAATGTTCAAT-TCATATACTCAGTAC-----------TTTTTCAATCTTATTTTAGAAT---------------------G-ACGT--TG-AATCAA-CGTCAA-GATTTCGACGT-ATGGCTGTCAATT-A-CAAAATACGAACAACATCT---------CTT---TCAACGTTTCGAAATTCGACGCTTGTTTCAACGTCAGA--------TTTCGAC-------------GTC-GTTCAATTAACAAAATCAAACATCTTTCAACG-CATTTCAACGTC-GAAATGCG-------ACGTTGTTTCA--ACG-TTGAA--TCAATG-TGATGTGCCTGCTGGGTTAGTAGGCGTTC-AGATAAATCC
gi|10 : tacaAT-AAATTAACAAAC-T-G-AGGCAGACTGTGTA--GACATTTTTTAGGTGGTGGTGATGGTTG-A-A-GTTGTAAC-TGTAA---ACATGTCTCCA-TATTTTTTTTTAATTTTGTTTTTCCATACA--GACGTTTATAA--AATGC-CATGATGGGGTG-GGGGAGGA-----GGGGCAACATGTCTTTCTTAACTTTCATA-TTAATTTTGTTTTCCCATCCAGACatttgcct
gi|11 : GGGG-ATTATCTTGTCCTTATGAAATACTTTAAAAAATGTGAAAGAATGAAAATATTTCAT----ATA
gi|12 : AATATATTT-AACGTCTTTTCA-CGTCCGAAATGCG-------A-ATTGTTTTATAACGATGGAA-----------ATGTGCCTGCTGGGT--GTGTTCGTTCTCGTTAAGTCCtcttgatagtccatcgggaaccgatgatgactttgtctatggactcagcgatgatgatgaatgtggct
gi|13 : -ATGGAAAGAA-TAGAAAATTGGATGACTTCTCTAAGTAATCATAAATTAGTATTGTCTTAAATTT-ATTCCATTA-TTTATTAAAGATGtgtatt
gi|14 : gggtgagACATGTACGCGTAGCATTATCA------TATCAGAACAAAT-TTCAGTC-AATGACTGAAAATTGT---CAAGTGTCAGA-
gi|17 : cctAACGTCATTTCAACGTC-GAAATGCG-------ACCTTGTTTCA--ACG-T
gi|18 : GAG-AAAAAGTTAATG-AACTAATTTTACCTT-C
gi|2 : TAGCATTATTA------TATCAGAACAAAT-TTCAGTG-AATGACTGCAAATTGT---CAAGTGTCAGA--TGGAAAGAA-TAGAAAATTGGATGACTTTTCGAAGTACTCATAAATAAGTATTGTTTTAAATTT-ATTCCATTA-TTTAATAAAGATGGGGGATTATCTTATCCTTATGAAATATTTTTACAA-TGTGGAAGAATGAAAATATTTCAT----ATA---TATCAA-T-AAGATCAAATTA-CAAAA-TTG-AGGCAGACTGTGTAAAGACATTTTTTAG-TGGTGGTGATGGT---GTGTGTTGTAAC-TGTAAA--ACATGTCTCCAATATTTTTTAA-AATTTTGTTTT-CCATACA--GACGTTTATAA--AATGC-CATGATGGGG-----GAGGGG-GA---GGGTAACATGTC-TTCTTAACTTTCATATTTAATTTTGTTTT-CCATCCAGAC----GTCTAATCATATGCCATGTTGGTGAAAATGAAGT---TTTGGTGAAACAA--GGGAATAGCTGCTAAAGGTAAACAGA-TTATATACACTGTAATAAAATAATAAAAG-ATAG-ATAT-AACATTTT-ATTT--AAAATGAAATTGCTAATGATATA------TT-ATGAAAAATATCCAGA--------AATATTAGAATCATGATCTACA------ATAAATTCTCAAATGAAACTTAA-TTTT-A-TT-GTGATAATGATTTT--TCATTGA-TTTTAGAATGTGT-ACTTCCTAGCAG--TCCTATGGCAACTGAAAGCAGCAT-AAATTTAATTCAACACTGTG---A-AATA--CCTGACATATATCCCTG-AAAGAACTGGAGGAGGAGGTGGCTGAAGGCTTTGTGTTT-GAAAAAAAAAATCTGTTGT-A-ACCTTTGACAATCC-TTGG-AAAAATATTCTAACATACTAGTAATCAATCTTGACAGGAGAAAATTATCTCTTAGGG-TAAATGAATGTTGTGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATCTTTAAATTGACATTAAATTGAACCCATGAG-AAAAAGCTAATG-AACTAATTTTACCTT-CATGTACATTTTTAAAAG-------------ATCACTTTTGTTCCAGTTTGCTATG-CAAAA--TTAT-ACAGTTTCATC-TTCAT--TTTATTGTC--AT---TA--TTTAATCTTTTT
gi|3 : ataatactacGACGTCTA-TCATATGACAACTTGGTGAAT-TGAAGT---TTTCGGGAAA---CAGGGAAGAGCTGCTAAAGGTAAACA-AATTATATACACTGTAATAAAATAATAAAAG-ATAG-ATAT-AATATTTT-ATTT--AAAATGAAATTGCTAAT-AGATA------TT-ATGAAAAATA-CCAGA--------AATATTAGAATCATGATCTACA------ATAAATTCCGAAATTAAACTTAATTTTT-TATT-GTGATTATGA-TTT--TTATTGATTTTTAGAATGTGTAACTTCCTAGCAG--TTC-ATGGCAACTGAAAGCAGCAT-AGATTTAATTC--------------------CCTGAAATATATCCCAG-AAAGAACTGGAGGAGGAGATGGCTGAAGGCTTTGTG-TT-G-AAAAAAAAATCTGTTGT-AGGCCGTTGACAATCC-TTGGAAAAAATATTCTAATATACTTGTAATCAATCTTGACTGGAGAAAATTATCTGTTAGGG-TAAATGAATGTCGTGG-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATCTTT-AATTGACATTAAATTGAACCCATAAGAAAAAAGCT-ATGAAACTAA-TTTACCTA-CATGTACATTTTAAAATGAATTGAACTACGTATCACTTTTGTTATATTTTGCTATG-CAAAA--TTATAACAGTTTCAATATTCAT--TTTATTGTC--GT---TA--TTTAATC-TTTTTAT---GAAATA--ACCAATTATTGTTAAGGGG--TGAGAGA-TATTCAAA-A-ACTT--AAATGAAGGAAGTTA-----G---ATTAGCAGT-TGT------ATTTTAATGTTCAAT-TGATATACTCAATAC----------TTTTTTCAACCTTA-TTCAGAGT---------------------GCACGT--TGAAATCAA-CGCC-A-GATTTCGACGT--CGGT--TCAGTTAA-CAAAAT-CAAAC---ATCTTTCAACGTCATT---TCAACG--TCGAAATACAACG-TTGATTCAACGTTGAAATCCGACGTTTCAACGTCAGATTTCGACGTCGGTTCAATTAACAAAATCAAACATCTTTCGACGTCATTTCAACGTC-GAAATGCG-------ACGTTGTTTCA--ACG-T-------------TGATGTGCCTGCTGGG-TAGT
gi|4 : T-ATGAAAAATATCCAGA--------AATATTAGAATCATAATCTACATGTACAATAAATTCTCAAATTAAACTCAA-TTTT-A-TT-GTGATTATGATTTTTTTTATTGA-TTATAGAATGTAT-ACTTCCTAGCAG--TCCTATGGCAGCTGAAAGCAGCAT-AGATTTAATTCAACATTGTG---A-AATA--CCTGAAATATATCCCTG-AAAGAACTGGAGGAGGAGGTGGCTGAAGGCTTTGTGTTT-G-AAAAAAATAT-TGATGT-A-ACCGTTGACAATCC-TTGGAAAAAATAGTCTAATATACTAGTAATCAATCTTGACAGGAGAAAATCATCTGTTAGGG-TAAATGAATGTTGTGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATCTTTAAATTGACATTATATTGAACCCATGAG-AA---------------AATTTTACCTT-CATGTACATTTTCAAATGCACTGAACTACATATCACTGTT-TTA------GTCATGACTAAATTTTAT-ACAGTTTCATCA-TCATTATTTATTGTCA-AT---TAAGTTTAAT-TTTTGTATTGAGAAATAGCACTAATTATTGTTAAGGGGCTT-AAAGA-GATTCAAAGACATTTGAGAATGAAGGAATGTAGGAAGGGAAATTAGCAAG-TGTGAATCCA-TTTAA-----AAA-TAAT-TACTCAcaattgaaaataaacttgccacgaactctgaccatctaagtatattt
gi|4 : TCCTATT-CAGAGT---------------------GGACGTAAGG-AGGCAA-CGTC-ATGATT-CGATGTC--GGT--TCAATT-AACAAAAT-CAAANNN-NNNN---------NNN---NNNNNN-NNNNNNNNNNNNNN-NNNNNNNNNNNNNNNN--------NNNNNNN-------------NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGATT-CAACGTT-GAATTCCG-------ACGTTGTTTCG--ACG-TC--A--TCGACgaatgacctagagaaccaagaaacggagtatacgtaataacgactcctattcagagtggacgtaaggaggcaacgtcatgattcgatgtcggttcaattaacaaaatcaaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncgattcaacgttgaattccgacgttgtttcgacgtcatcgacctcggttcaattaactaaatcaaacatctttcaacgtcatttcatcgtcgaaatacaacgatatacgttggttcaaagttgaaatccaatgttgtg
gi|4 : tatgaaaaatatccagaaatattagaatcataatctacatgtacaataaattctcaaattaaactcaattttattgtgattatgattttttttattgattatagaatgtatacttcctagcagtcctatggcagctgaaagcagcatagatttaattcaacattgtgaaatacctgaaatatatccctgaaagaactggaggaggaggtggctgaaggctttgtgtttgaaaaaaatattgatgtaaccgttgacaatccttggaaaaaatagtctaatatactagtaatcaatcttgacaggagaaaatcatctgttagggtaaatgaatgttgtggnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatctttaaattgacattatattgaacccatgagaaaattttaccttcatgtacattttcaaatgcactgaactacatatcactgttttagtcatgactaaattttatacagtttcatcatcattatttattgtcaattaagtttaatttttgtattgagaaatagcactaattattgttaaggggcttaaagagattcaaagacatttgagaatgaaggaatgtaggaagggaaattagcaagtgtgaatccatttaaaaataattactcagaatgacctagagaaccaagaaacggagtatacgtaataacgacT---TCAACG-TT-GAATTCCGACG-TTGTTTCGACGTCA------------TCGAC-------------CTCGGTTCAATTAACTAAATCAAACATCTTTCAACGTCATTTCATCGTC-GAAATACAACGATATACGTTGGTTCA--AAG-TTGAAATCCAATG-T--TGTGctcggttcaattaactaaatcaaacatctttcaacgtcatttcatcgtcgaaatacaacgatatacgttggttcaaagttgaaatccaatgttgtg
gi|5 : tatgaaaaatatccagaaatattagaatcataatctacatgtacaataaattctcaaattaaactcaattttattgtgattatgattttttttattgattatagaatgtatacttcctagcagtcctatggcagctgaaagcagcatagatttaattcaacattgtgaaatacctgaaatatatccctgaaagaactggaggaggaggtggctgaaggctttgtgtttgaaaaaaatattgatgtaaccgttgacaatccttggaaaaaatagtctaatatactagtaatcaatcttgacaggagaaaatcatctgttagggtaaatgaatgttgtggnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatctttaaattgacattatattgaacccatgagaaaattttaccttcatgtacattttcaaatgcactgaactacatatcactgttttagtcatgactaaattttatacagtttcatcatcattatttattgtcaattaagtttaatttttgtattgagaaatagcactaattattgttaaggggcttaaagagattcaaagacatttgagaatgaaggaatgtaggaagggaaattagcaagtgtgaatccatttaaaaataattactcagaatgacctagagaaccaagaaacggagtatacgtaataacgactcctattcagagtggacgtaaggaggcaacgtcatgattcgatgtcggttcaattaacaaaatcaaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncgaTTA------TATAAGAACAAAAATTCAGTGCAATGACTGCAAATTGTGGTCAAG-GTCAAAGATGGAAAGAAATAGAAAAT-GGATGACTTTTCGACGTACTCGTAAATTAGTATTGTTTCATATTCAATTCC-TTATTTTATGAAAGATGGAG-A-TATC-TAT-CTTATGGAATATTTTTACAA-TGTGGAAGAATGAAAATATTTCAT----A----ATATCAT-TAAAAAT-AAATTA-CAAAA-T-GAAGACAGACT-TGTAAAGACA-TTTTTAG-T-GTGGTGATGGTT--GTG-GTTG-AGCTTGTAAGTTATATGTCTCCA-TATCTATTT--AATTTTGTTTT-CCATACAAGGACGATTATAAACAATGCAAATGATGGGTTGAGGGAG----GGTGGGGGT---ATGTC-TTCTTAACTTTAATATTTAATTTTGCTTT-CCATCCAGACAGACGTCTA-TCAT---TCCTGTTGGTGAAAATGAA-TGTTTTTAGGGAAAAAACAGGGAAAAGCGGCTAAAGGTAAAC--A-TCATAAAT-CTGTAA-AAAATAATTAAAGGATAGAATGTCAACATTTTAATTTAAAAAATGAAATTGCTAATGATATA------TTAATGAAAA----------------------TAG--CCATGATCTACA------ATGAA-TCTC-AATTAAACTTAA-TTTTAAATT-GCGAGTATGA-TTT--TTATTGA-TTTTAGAA-ATAC-ACATCCTAGCAGGATCC-AT-GCAACTGAAAGC-GCATAAGATTTTTTCCAGCA-TGTG---A-AATA---TTGCAATATATCACTGAAAAGAACTGGAGTAGGTGGTGGCTGAAGGCTTTGTGTTTGG-AAAAAAAAATATG-TGTAA-ACCATTGAACATCC-TTTGAAAAACTATTC
gi|6 : GTACTCGTAAATTAGTATTGTTTCATATTC-ATTCCCTTA-TTTATGAAAGATGGAG-ATTATCTTATCTTTATGGAATATTTTTACAA-TGTGGAAGAATGAAAATATTTCAT-------ATATATCAA-T-TAAAT-AAATTA-CAAAATT-G-AGACAGACTGTGTAAAGACA-TTTTTAG-TGGTGGTGATGGTT--GTG-GTTGTAGC-TGTAAGTTATATGTCTCCA-TATCTATTT--AATTTTGTTTT-CCATACA--GACGATTATAA--AATGC-AATGATGGGGT---TGAGGGAGGGTGGGGGT---ATGTC-TTCTTAACTTTAATATTTAATTTTGCTTT-CCATCCAGACAGACGTCTA-TCAT---TCCTGTTGGTGAAAATGAA-TGTTTTTAGGGAAAAAACAGGGAAAAGCGGCTAAAGGTAAAC--A-TCATAAAT-CTGTAA-AAAATAATTAAAGGATAGAATGTCAACATTTTAATTTAAAAAATGAAATTGCTAATGATATA------TTAATGAAAA----------------------TAG--CCATGATCTACA------ATGAA-TCTC-AATTAAACTTAA-TTTTAAATT-GCGAGTATGA-TTT--TTATTGA-TTTTAGAA-ATAC-ACATCCTAGCAGGATCC-AT-GCAACTGAAAGC-GCATAAGATTTTTTCCAGCA-TGTG---A-AATA---TTGCAATATATCACTGAAAAGAACTGGAGTAGGTGGTGGCTGAAGGCTTTGTGTTT-G-GAAAAAAAATATGTTGT-A-ACCATTGAACATCC-TTGGAAAAACTATTCTAGTc
gi|7 : cAGGGAAAAGCAATTTTATGTAAGCA-AATTATATATTCTGTAATAAAA---------GATAC-ACAT-AAC-TTTT-ATTT--AGAATAAAATCGCTAATGAGATACATGAATT-ATGAAACGTATCCAGA--------AATATTTCAATCATAATTTACA------ATAAATTCTCAAGTTACATTT-----TT-AATTTGTGATTATGATTTTTTTTATTGA-TTTTAGAATGTGT-ACTTCCTAGTAG--TCTTATGGCAACTGAGAGCAGTAT-AGGTTTAATT----ATTGCGTCTACAATACCCCTGGAATATGTCCCTC-AAAGAGCT---GGAGGAGGTGGCCGAAGGCGTTGTGTTT-A-AAAACAAAATATGTTGT-A-ACCGTTGAAAATCCTTTGAAAAAAATGTTTTAATA------TAAT--ATCTTGACTAGAGAAAATTATTTATTAGAGTTAAATGAATAT
gi|8 : TTCAAACTGACAATAAATTAAATCCATGAG-AAAATTCTAATG-AACAAGTTTTACCTTGCATGTACATTTATAAATGCACTAAACTATGAATCACTGTTGTTAT---------------AA--TTAT-AAAGTTTCGTTATTCAT--TTTGTTATCAGATGAGTA--TTTAATATTTTTTAT---AAGATAG-ACTAATTATAG-TAAAGGT--T-AGCAATTATT-----GTATTTA-GAATCGAGGA
gi|8 : tAACTTTGCAGTATCT------A-T--AAGGTTCAATGTAACATATTTAATACCCTGGTACCTTTTTTTCAATCTTATTTCAGAGTCGCATCAACATCATGTTTATTG-ACGT--TG-AATCAA-CGTC-A-TATTTCAAtttcaacattatgttgaccatttttcagcatctactattaactttgcagtatctataaggttcaatgtaacatatttaataccctggtacctttttttcaatcttatttcagagtcgcatcaacatcatgtttattgacgttgaatcaacgtcatatttcaa
gi|9 : tttcaaactgacaataaattaaatccatgagaaaattctaatgaacaagttttaccttgcatgtacatttataaatgcactaaactatgaatcactgttgttataattataaagtttcgttattcattttgttatcagatgagtatttaatattttttataagatagactaattatagtaaaggttagcaattattgtatttagaatcgaggatttcaacattatgttgaccatttttcagcatctactattACG-TT-GAATTCCGACG-TTGTTTCGACGTCA------------TCGAC-------------CTCGGTTCAATTAACTAAATCAAACATCTTTCAACGTCATTTCATCGTC-GAAATACAACGATATACGTTGGTTCA--AAG-TTGAAATCCAATG-T--TGTGTC
gi|9 : TCGACCTCGGTTCA-ATT---------------------A-AC----TA-AATCAAACATC-----TTTCAACGTCATTTCA-TCG--T---CGAAATACAA-CGATATAC---------GTTGGTTCAAAG-TT-GAAATCCAATG-TTGTGTCAACGTCAGA--------TTTCGAC-------------GTCGGTTCAATTATCAAAATCAAATATCTTTCAACGTCATTTCAACGTC-GAAATGCG-------ACGTTGTTTTA--ACG-TTGTA--TCAACGTTGATGTGCCTaacgtcagatttcgacgtcggttcaattatcaaaatcaaatatctttcaacgtcatttcaacgtcgaaatgcgacgttgttttaacgttgtatcaacgttgatgtgcct
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|15 ): GGAATTCTTTTAGAGAGAGTAACTATCTTCAACTCAACATACATGTATATATTTAATT
Unaligned ( gi|16 ): CTGGGAAATAAGCTTACGATCGACTCGAGCTGTCATGGGTATGTATAT
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 222 222222 1 1 111 11 1 333333333 111 1 11 222 1 11 11 111 1111 11 111 1111 111111 1111 2222 1 1 1 1 11 111111 1 22222222 111111 111 1 11 11 1 1 1 11111 111 1 4444444444444444444444444444444444444444444444444444444444444444444444 111111 11 11 22 111 11 111 11 1111 11 111 22 444444444 1 22222222 1 66666666666 77777777777777777777777 11 111 44444444 222 1 4444444444 11 111 1111 222222222222222 33333333333333 3333333 22222222222 11 11
lowQualScore : 000 888888 0 0 777 3 11 0 3 1 8 5 8 0 8 0 0 8 666666666 111 8 8 8 8 8 0 0 0 0 8 3 0 11 8 0 8 999 8 8 1 5 8 11 1 11 8 333 1111 11 8 0 8 666 8 2222 22 0 333333 1 0000 1 5555 1 7 3 6 3 3 3 88 1 999999 1 7777 00000000 5 666666 5 5 1 5 888 5 1 4 55 5 5 5 55 2 4 5 1 1 33 0 00000 222 1 5 5 6 1 5 5 0 5 5 0 1 1 8 0000000000000000000000000000000000000000000000000000000000000000000000 0 6 3 6 7 3 6 8 1 1 1 0 666666 1 8 1 11 8 11 11 88 444 11 55 777 22 3 4444 11 2 111 99 222222222 0 99999999 3 9 0 0 3 55555555555 5 0 77777777777777777777777 11 8 8 666 0 33333333 7 444 5 2222222222 00 444 7777 1 6 000000000000000 66666666666666 0 1 3 5 2222222 66 444 99999999999 44 22 66 1
lowQualScore : ... ...... . . ... . .. . . . . . . . . . . . ......... ... . . . . . . . . . . . . .. . . . ... . . . . . .. . .. . ... .... .. . . . ... . .... .. . ...... . .... . .... . . . . . . . .. . ...... . .... ........ . ...... . . . . ... . . . .. . . . .. . . . . . .. . ..... ... . . . . . . . . . . . . . . ...................................................................... . . . . . . . . . . . . ...... . . . .. . .. .. .. ... .. .. ... .. . .... .. . ... .. ......... . ........ . . . . . ........... . . ....................... .. . . ... . ........ . ... . .......... .. ... .... . . ............... .............. . . . . ....... .. ... ........... .. .. .. .
lowQualScore : 000 888888 0 0 555 2 22 0 2 4 0 6 0 6 0 8 8 0 222222222 000 0 0 0 0 0 8 8 6 8 0 2 8 00 0 8 0 000 0 0 4 8 0 00 4 00 0 888 8888 22 0 8 0 111 0 6666 00 8 000000 4 4444 0 0000 7 3 7 7 3 3 3 33 0 222222 4 7777 77777777 0 444444 0 0 4 7 111 7 4 1 77 7 0 7 77 0 3 0 4 0 66 6 11111 111 4 7 7 6 7 7 7 7 7 0 8 0 4 0 0000000000000000000000000000000000000000000000000000000000000000000000 8 7 2 7 5 2 7 8 4 4 0 6 666666 0 0 0 00 0 66 00 44 000 00 88 555 55 2 8888 00 5 222 00 222222222 0 88888888 2 2 0 8 2 77777777777 6 8 22222222222222222222222 00 0 0 888 8 00000000 0 888 5 5555555555 55 000 0000 3 7 000000000000000 88888888888888 2 3 6 0 5555555 99 666 88888888888 77 00 55 0
consensus : NNNNACATGTACGCGTAGCATTATTA------TATCAGAACAAAT-TTCAGTG-AATGACTGCAAATTGT---CAAGTGTCAGA-ATGGAAAGAA-TAGAAAATTGGATGACTTTTCGAAGTACTCGTAAATTAGTATTGTTTTAAATTT-ATTCCATTA-TTTATTAAAGATGGGG-ATTATCTTATCCTTATGAAATATTTTTACAA-TGTGGAAGAATGAAAATATTTCAT----ATAATATATCAA-T-AAGAT-AAATTA-CAAAA-T-G-AGACAGACTGTGTAAAGACATTTTTTA-GTGGTGGTGATGGTTG--TG-GTTGTAAC-TGTAAGTTACATGTCTCCA-TA-TTTTTTTAAATTTTG-TTTTCCATACA--GACGTTTATAA--AATGC-CATGATGGGGTG-GGGAGGGA-GGTGGGGGTAACATGTC-TTCTTAACTTTCATATTTAATTTTGTTTT-CCATCCAGACAGACGTCTA-TCATATGCCATGTTGGTGAAAATGAAGTGTTTTTGGGGAAANAACAGGGAAAAGCNGCTAAAGGTAAACA-A-TTATATACACTGTAATAAAATAATAAAAGGATAG-ATAT-AACATTTT-ATTT--AAAATGAAATTGCTAATGANATA------TT-ATGAAAAATATCCAGA--------AATATTAGAATCATGATCTACA------ATAAATTCTCAAATTAAACTTAA-TTTT-AATT-GCGATTATGATTTT--TTATTGA-TTTTAGAATGTGT-ACTTCCTAGCAG--TCCTATGGCAACTGAAAGCAGCAT-AGATTTANTTCAACATTGTG---A-AATA--CCTGAAATATATCCCTG-AAAGAACTGGAGGAGGAGGTGGCTGAAGGCTTTGTGTTT-G-AAAAAAAAATNTGTTGT-A-ACCGTTGACAATCC-TTGGAAAAAATATTCTAATATACTAGTAATCAATCTTGACAGGAGAAAATTATCTGTTAGGG-TAAATGAATGTTGTGGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTNNNNNNNNNNNNNNNNNNNATCTTTAAATTGACATTAAATTGAACCCATGAG-AAAAAGCTAATG-AACTAATTTTACCTT-CATGTACATTTTTAAATGNACTGAACTACGTATCACTTTTGTTATATTTTGCTATG-CAAAA--TTAT-ACAGTTTCATCATTCAT--TTTATTGTCA-AT---TA--TTTAATCTTTTTTAT---GAAATAG-ACTAATTATTGTTAAGGGG--T-AGAGA-NATTCAAA-ACATTTG-GAATGAAGGAAGTTA-----GGAAATTAGCAGT-TGT------A-TTTAATGTTCAAT-TAATATACTCAATAC----------TTTTTTCAATCTTATTTCAGAGT---------------------G-ACGT--TG-AATCAA-CGTC-A-GATTTCGACGT-ACGGT--TCAATTAA-CAAAATACAAA-------CGACGTCCGTT---TCAACG-TTCGAAATCCGACG-TTGTTTCGACG------TCAGA--TTTCGAC-------------GTCGGTTCAATTAACAAAATCAAACATCTTTCAACGTCATTTCAACGTC-GAAATGCG-------ACGTTGTTTCA--ACGTTGAA--TCAACG-TGATGTGCCTGCTGGGTTAGTGNNCGTTCTNGNTAAGTCC
Reference ( family-895 ) : NNNNACATGTACGCGTAGCATTATTA------TATCAGAACAAAT-TTCAGTG-AATGACTGCAAATTGT---CAAGTGTCAGA-ATGGAAAGAA-TAGAAAATTGGATGACTTTTCGAAGTACTCGTAAATTAGTATTGTTTTAAATTT-ATTCCATTA-TTTATTAAAGATGGGG-ATTATCTTATCCTTATGAAATATTTTTACAA-TGTGGAAGAATGAAAATATTTCAT----ATAATATATCAA-T-AAGAT-AAATTA-CAAAA-T-G-AGACAGACTGTGTAAAGACATTTTTTA-GTGGTGGTGATGGTTG--TG-GTTGTAAC-TGTAAGTTACATGTCTCCA-TA-TTTTTTTAAATTTTG-TTTTCCATACA--GACGTTTATAA--AATGC-CATGATGGGGTG-GGGAGGGA-GGTGGGGGTAACATGTC-TTCTTAACTTTCATATTTAATTTTGTTTT-CCATCCAGACAGACGTCTA-TCATATGCCATGTTGGTGAAAATGAAGTGTTTTTGGGGAAANAACAGGGAAAAGCNGCTAAAGGTAAACA-A-TTATATACACTGTAATAAAATAATAAAAGGATAG-ATAT-AACATTTT-ATTT--AAAATGAAATTGCTAATGANATA------TT-ATGAAAAATATCCAGA--------AATATTAGAATCATGATCTACA------ATAAATTCTCAAATTAAACTTAA-TTTT-AATT-GCGATTATGATTTT--TTATTGA-TTTTAGAATGTGT-ACTTCCTAGCAG--TCCTATGGCAACTGAAAGCAGCAT-AGATTTANTTCAACATTGTG---A-AATA--CCTGAAATATATCCCTG-AAAGAACTGGAGGAGGAGGTGGCTGAAGGCTTTGTGTTT-G-AAAAAAAAATNTGTTGT-A-ACCGTTGACAATCC-TTGGAAAAAATATTCTAATATACTAGTAATCAATCTTGACAGGAGAAAATTATCTGTTAGGG-TAAATGAATGTTGTGGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTNNNNNNNNNNNNNNNNNNNATCTTTAAATTGACATTAAATTGAACCCATGAG-AAAAAGCTAATG-AACTAATTTTACCTT-CATGTACATTTTTAAATGNACTGAACTACGTATCACTTTTGTTATATTTTGCTATG-CAAAA--TTAT-ACAGTTTCATCATTCAT--TTTATTGTCA-AT---TA--TTTAATCTTTTTTAT---GAAATAG-ACTAATTATTGTTAAGGGG--T-AGAGA-NATTCAAA-ACATTTG-GAATGAAGGAAGTTA-----GGAAATTAGCAGT-TGT------A-TTTAATGTTCAAT-TAATATACTCAATAC----------TTTTTTCAATCTTATTTCAGAGT---------------------G-ACGT--TG-AATCAA-CGTC-A-GATTTCGACGTCACGGC--TCAATT-A-CAAAATACAAA-------CGACATCTNTT---TCAACG-TTCGAAATCCGACG-TTGTTTCGACG------TCAGA--TTTCGAC-------------GTCGGTTCAATTAACAAAATCAAACATCTTTCAACGTCATTTCAACGTC-GAAATGCG-------ACGTTGTTTCA--ACGTTGAA--TCAACG-TGATGTGCCTGCTGGGTTAGTGNNCGTTCTNGNTAAGTCC
gi|1 : ACATGTAC---TAGCATTATTACATGTATATCAGGACAAAT-TGCAGTG-AATAACTGCAAATTGT---CAAGTGTCAGA-ATGGAAAGAA-TAGAGAAGTGGATGACTTTTCGAAGTACTCATAAATTAGTATTGTTTTAAATTT-ATTCCATTA-TTCATTAAAGATTGGG-ATTATTTTATCCTTATGAAATACTTTTATAA-TGTGGAAGAATGAAAATATTTCATTTTAATAATATATCAAAT-AAGAT-AAATCA-CAAAA-T-G-GGAC---CTGTGTAAAGACATTTCT-----AGTGGTGATAGTTACATG-GATGTAAC-TGTAA---ACATGTCTGCA-TA-TTTTTTTAAATTTTG-TTTTCCATACA--GACGTTTATAA--AATGC-CATGATGGGGTG-GGGAGGGA-GGTGGGGGTAACATGTC-TTCTTAACTTTCATATTTAATTTTGTTTT-CCATCCAGAC----GTCTA-TCAAATGCCAAGTTCGTGAAAATGAAGTGTT---GGGGAAATAA--GGGAAAAGCTGCTAAAGGTAAACATA-TTATATACACTGTAATAAAATAATAAAAGG-TAG-ATAT-CACATTTT-ATTT--AAAATGAAATTGCTAATGAGATA------TT-ATGGAAAATATCCAGATTTGCAGAAATATTAGAATCATGATCTACA------ATAACTTCTCAAATTAAACCTCA-TTTT-A-TT-GTGGTTATGGCATT--TTATTGA-TTTTAGAATGTGT-ACTTCCTAGCAG--TCCTATGGTAACTGAAAGCAGCAT-AGATTTATTTCAACATTGTG---A-AATA--CCTGAAATATATCCCTG-AAAGAACTGGAGGAGGAGGTGGCTGAAGGTTTTGTGTTT-G-AAAAAAAAATCTGTTGT-A-ACCGTTGACAATCC-TTGG-AAAGATATTTCAATATACTAGCAATCAATCTTGACAGGAGAAAATTATATGTTAGGG-TAAATGAATGTTGTGGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTT-------------------ATCTTTAAATTGACATTAAATTGAACCCATGAG-AAAAAGCTAATA-AAC------CATCTC-CATGTACATTTTTAAATGAATTGAACTATGTATCACTTTTGTTATATTTTGCTTTG-CAAAA--TTAT-ACAGTTTCATCATTCGT--TTTATTGTC--AT---TA--TTTAATCTTTTTTAT---GAAATAG-ACTAATTATTATTAAGGGG--T-AAAGA-AATTCAAA-ACATTT--GAATGAAGGAAGTTA-----GG--ATTAGCAAT-TGT------A-TTTAATGTTCAAT-TCATATACTCAGTAC-----------TTTTTCAATCTTATTTTAGAAT---------------------G-ACGT--TG-AATCAA-CGTCAA-GATTTCGACGT-ATGGCTGTCAATT-A-CAAAATACGAA-------CAACATCTCTT---TCAACGTTTCGAAATTCGACGCTTGTTTCAACG------TCAGA--TTTCGAC-------------GTC-GTTCAATTAACAAAATCAAACATCTTTCAACG-CATTTCAACGTC-GAAATGCG-------ACGTTGTTTCA--ACGTTGAA--TCAATG-TGATGTGCCTGCTGGGTTAGTAGGCGTTC-AGATAAATCC
gi|10 : tacaAT-AAATTAACAAAC-T-G-AGGCAGACTGTGTA--GACATTTTTTAGGTGGTGGTGATGGTTG--AA-GTTGTAAC-TGTAA---ACATGTCTCCA-TATTTTTTTTTAATTTTGTTTTTCCATACA--GACGTTTATAA--AATGC-CATGATGGGGTG-GGGGAGGA-----GGGGCAACATGTCTTTCTTAACTTTCATA-TTAATTTTGTTTTCCCATCCAGACatttgcct
gi|11 : GGGG-ATTATCTTGTCCTTATGAAATACTTTAAAAAATGTGAAAGAATGAAAATATTTCAT----ATA
gi|12 : AATATATTT-AACGTCTTTTCA-CGTCCGAAATGCG-------A-ATTGTTTTATAACGATGGA----------AATGTGCCTGCTGGGT--GTGTTCGTTCTCGTTAAGTCCtcttgatagtccatcgggaaccgatgatgactttgtctatggactcagcgatgatgatgaatgtggct
gi|13 : -ATGGAAAGAA-TAGAAAATTGGATGACTTCTCTAAGTAATCATAAATTAGTATTGTCTTAAATTT-ATTCCATTA-TTTATTAAAGATGtgtatt
gi|14 : gggtgagACATGTACGCGTAGCATTATCA------TATCAGAACAAAT-TTCAGTC-AATGACTGAAAATTGT---CAAGTGTCAGA-
gi|17 : cctAACGTCATTTCAACGTC-GAAATGCG-------ACCTTGTTTCA--ACGT
gi|18 : GAG-AAAAAGTTAATG-AACTAATTTTACCTT-C
gi|2 : TAGCATTATTA------TATCAGAACAAAT-TTCAGTG-AATGACTGCAAATTGT---CAAGTGTCAGA--TGGAAAGAA-TAGAAAATTGGATGACTTTTCGAAGTACTCATAAATAAGTATTGTTTTAAATTT-ATTCCATTA-TTTAATAAAGATGGGGGATTATCTTATCCTTATGAAATATTTTTACAA-TGTGGAAGAATGAAAATATTTCAT----ATA---TATCAA-T-AAGATCAAATTA-CAAAA-TTG-AGGCAGACTGTGTAAAGACATTTTTTA-GTGGTGGTGATGGT-G--TGTGTTGTAAC-TGTAAA--ACATGTCTCCAATA-TTTTTTAAAATTTTG-TTTTCCATACA--GACGTTTATAA--AATGC-CATGATGGGG-----GAGGGG-GA---GGGTAACATGTC-TTCTTAACTTTCATATTTAATTTTGTTTT-CCATCCAGAC----GTCTAATCATATGCCATGTTGGTGAAAATGAAGT---TTTGGTGAAACAA--GGGAATAGCTGCTAAAGGTAAACAGA-TTATATACACTGTAATAAAATAATAAAAG-ATAG-ATAT-AACATTTT-ATTT--AAAATGAAATTGCTAATGATATA------TT-ATGAAAAATATCCAGA--------AATATTAGAATCATGATCTACA------ATAAATTCTCAAATGAAACTTAA-TTTT-A-TT-GTGATAATGATTTT--TCATTGA-TTTTAGAATGTGT-ACTTCCTAGCAG--TCCTATGGCAACTGAAAGCAGCAT-AAATTTAATTCAACACTGTG---A-AATA--CCTGACATATATCCCTG-AAAGAACTGGAGGAGGAGGTGGCTGAAGGCTTTGTGTTT-GAAAAAAAAAATCTGTTGT-A-ACCTTTGACAATCC-TTGG-AAAAATATTCTAACATACTAGTAATCAATCTTGACAGGAGAAAATTATCTCTTAGGG-TAAATGAATGTTGTGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATCTTTAAATTGACATTAAATTGAACCCATGAG-AAAAAGCTAATG-AACTAATTTTACCTT-CATGTACATTTTTAAAAG-------------ATCACTTTTGTTCCAGTTTGCTATG-CAAAA--TTAT-ACAGTTTCATC-TTCAT--TTTATTGTC--AT---TA--TTTAATCTTTTT
gi|3 : ataatactacGACGTCTA-TCATATGACAACTTGGTGAAT-TGAAGT---TTTCGGGAAA---CAGGGAAGAGCTGCTAAAGGTAAACA-AATTATATACACTGTAATAAAATAATAAAAG-ATAG-ATAT-AATATTTT-ATTT--AAAATGAAATTGCTAAT-AGATA------TT-ATGAAAAATA-CCAGA--------AATATTAGAATCATGATCTACA------ATAAATTCCGAAATTAAACTTAATTTTT-TATT-GTGATTATGA-TTT--TTATTGATTTTTAGAATGTGTAACTTCCTAGCAG--TTC-ATGGCAACTGAAAGCAGCAT-AGATTTAATTC--------------------CCTGAAATATATCCCAG-AAAGAACTGGAGGAGGAGATGGCTGAAGGCTTTGTG-TT-G-AAAAAAAAATCTGTTGT-AGGCCGTTGACAATCC-TTGGAAAAAATATTCTAATATACTTGTAATCAATCTTGACTGGAGAAAATTATCTGTTAGGG-TAAATGAATGTCGTGG-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATCTTT-AATTGACATTAAATTGAACCCATAAGAAAAAAGCT-ATGAAACTAA-TTTACCTA-CATGTACATTTTAAAATGAATTGAACTACGTATCACTTTTGTTATATTTTGCTATG-CAAAA--TTATAACAGTTTCAATATTCAT--TTTATTGTC--GT---TA--TTTAATC-TTTTTAT---GAAATA--ACCAATTATTGTTAAGGGG--TGAGAGA-TATTCAAA-A-ACTT--AAATGAAGGAAGTTA-----G---ATTAGCAGT-TGT------ATTTTAATGTTCAAT-TGATATACTCAATAC----------TTTTTTCAACCTTA-TTCAGAGT---------------------GCACGT--TGAAATCAA-CGCC-A-GATTTCGACGT--CGGT--TCAGTTAA-CAAAAT-CAAACATCTTTCAACGTC-ATT---TCAACG--TCGAAATACAACG-TTGATTCAACGTTGAAATCCGACGTTTCAACGTCAGATTTCGACGTCGGTTCAATTAACAAAATCAAACATCTTTCGACGTCATTTCAACGTC-GAAATGCG-------ACGTTGTTTCA--ACGT-------------TGATGTGCCTGCTGGG-TAGT
gi|4 : T-ATGAAAAATATCCAGA--------AATATTAGAATCATAATCTACATGTACAATAAATTCTCAAATTAAACTCAA-TTTT-A-TT-GTGATTATGATTTTTTTTATTGA-TTATAGAATGTAT-ACTTCCTAGCAG--TCCTATGGCAGCTGAAAGCAGCAT-AGATTTAATTCAACATTGTG---A-AATA--CCTGAAATATATCCCTG-AAAGAACTGGAGGAGGAGGTGGCTGAAGGCTTTGTGTTT-G-AAAAAAATAT-TGATGT-A-ACCGTTGACAATCC-TTGGAAAAAATAGTCTAATATACTAGTAATCAATCTTGACAGGAGAAAATCATCTGTTAGGG-TAAATGAATGTTGTGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATCTTTAAATTGACATTATATTGAACCCATGAG-AA---------------AATTTTACCTT-CATGTACATTTTCAAATGCACTGAACTACATATCACTGTT-TTA------GTCATGACTAAATTTTAT-ACAGTTTCATCA-TCATTATTTATTGTCA-AT---TAAGTTTAAT-TTTTGTATTGAGAAATAGCACTAATTATTGTTAAGGGGCTT-AAAGA-GATTCAAAGACATTTGAGAATGAAGGAATGTAGGAAGGGAAATTAGCAAG-TGTGAATCCA-TTTAA-----AAA-TAAT-TACTCAcaattgaaaataaacttgccacgaactctgaccatctaagtatattt
gi|4 : TCCTATT-CAGAGT---------------------GGACGTAAGG-AGGCAA-CGTC-ATGA-TTCGATGT--CGGT--TCAATTAA-CAAAAT-CAAA---------NNNNNNNNN---NNNNNN-NNNNNNNNNNNNNN-NNNNNNNNNNN------NNNNN--NNNNNNN-------------NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGATTCAACGTT-GAATTCCG-------ACGTTGTTTCG--ACGTC--A--TCGACgaatgacctagagaaccaagaaacggagtatacgtaataacgactcctattcagagtggacgtaaggaggcaacgtcatgattcgatgtcggttcaattaacaaaatcaaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncgattcaacgttgaattccgacgttgtttcgacgtcatcgacctcggttcaattaactaaatcaaacatctttcaacgtcatttcatcgtcgaaatacaacgatatacgttggttcaaagttgaaatccaatgttgtg
gi|4 : tatgaaaaatatccagaaatattagaatcataatctacatgtacaataaattctcaaattaaactcaattttattgtgattatgattttttttattgattatagaatgtatacttcctagcagtcctatggcagctgaaagcagcatagatttaattcaacattgtgaaatacctgaaatatatccctgaaagaactggaggaggaggtggctgaaggctttgtgtttgaaaaaaatattgatgtaaccgttgacaatccttggaaaaaatagtctaatatactagtaatcaatcttgacaggagaaaatcatctgttagggtaaatgaatgttgtggnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatctttaaattgacattatattgaacccatgagaaaattttaccttcatgtacattttcaaatgcactgaactacatatcactgttttagtcatgactaaattttatacagtttcatcatcattatttattgtcaattaagtttaatttttgtattgagaaatagcactaattattgttaaggggcttaaagagattcaaagacatttgagaatgaaggaatgtaggaagggaaattagcaagtgtgaatccatttaaaaataattactcagaatgacctagagaaccaagaaacggagtatacgtaataacgacT---TCAACG-TT-GAATTCCGACG-TTGTTTCGACG------TCA------TCGAC-------------CTCGGTTCAATTAACTAAATCAAACATCTTTCAACGTCATTTCATCGTC-GAAATACAACGATATACGTTGGTTCA--AAGTTGAAATCCAATG-T--TGTGctcggttcaattaactaaatcaaacatctttcaacgtcatttcatcgtcgaaatacaacgatatacgttggttcaaagttgaaatccaatgttgtg
gi|5 : tatgaaaaatatccagaaatattagaatcataatctacatgtacaataaattctcaaattaaactcaattttattgtgattatgattttttttattgattatagaatgtatacttcctagcagtcctatggcagctgaaagcagcatagatttaattcaacattgtgaaatacctgaaatatatccctgaaagaactggaggaggaggtggctgaaggctttgtgtttgaaaaaaatattgatgtaaccgttgacaatccttggaaaaaatagtctaatatactagtaatcaatcttgacaggagaaaatcatctgttagggtaaatgaatgttgtggnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatctttaaattgacattatattgaacccatgagaaaattttaccttcatgtacattttcaaatgcactgaactacatatcactgttttagtcatgactaaattttatacagtttcatcatcattatttattgtcaattaagtttaatttttgtattgagaaatagcactaattattgttaaggggcttaaagagattcaaagacatttgagaatgaaggaatgtaggaagggaaattagcaagtgtgaatccatttaaaaataattactcagaatgacctagagaaccaagaaacggagtatacgtaataacgactcctattcagagtggacgtaaggaggcaacgtcatgattcgatgtcggttcaattaacaaaatcaaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncgaTTA------TATAAGAACAAAAATTCAGTGCAATGACTGCAAATTGTGGTCAAG-GTCAAAGATGGAAAGAAATAGAAAAT-GGATGACTTTTCGACGTACTCGTAAATTAGTATTGTTTCATATTCAATTCC-TTATTTTATGAAAGATGGAG-A-TATC-TAT-CTTATGGAATATTTTTACAA-TGTGGAAGAATGAAAATATTTCAT----A----ATATCAT-TAAAAAT-AAATTA-CAAAA-T-GAAGACAGACT-TGTAAAGACA-TTTTTA-GT-GTGGTGATGGTTG--TG-GTTG-AGCTTGTAAGTTATATGTCTCCA-TA-TCTATTT-AATTTTG-TTTTCCATACAAGGACGATTATAAACAATGCAAATGATGGGTTGAGGGAG----GGTGGGGGT---ATGTC-TTCTTAACTTTAATATTTAATTTTGCTTT-CCATCCAGACAGACGTCTA-TCAT---TCCTGTTGGTGAAAATGAA-TGTTTTTAGGGAAAAAACAGGGAAAAGCGGCTAAAGGTAAAC--A-TCATAAAT-CTGTAA-AAAATAATTAAAGGATAGAATGTCAACATTTTAATTTAAAAAATGAAATTGCTAATGATATA------TTAATGAAAA----------------------TAG--CCATGATCTACA------ATGAA-TCTC-AATTAAACTTAA-TTTTAAATT-GCGAGTATGA-TTT--TTATTGA-TTTTAGAA-ATAC-ACATCCTAGCAGGATCC-AT-GCAACTGAAAGC-GCATAAGATTTTTTCCAGCA-TGTG---A-AATA---TTGCAATATATCACTGAAAAGAACTGGAGTAGGTGGTGGCTGAAGGCTTTGTGTTTGG-AAAAAAAAATATG-TGTAA-ACCATTGAACATCC-TTTGAAAAACTATTC
gi|6 : GTACTCGTAAATTAGTATTGTTTCATATTC-ATTCCCTTA-TTTATGAAAGATGGAG-ATTATCTTATCTTTATGGAATATTTTTACAA-TGTGGAAGAATGAAAATATTTCAT-------ATATATCAA-T-TAAAT-AAATTA-CAAAATT-G-AGACAGACTGTGTAAAGACA-TTTTTA-GTGGTGGTGATGGTTG--TG-GTTGTAGC-TGTAAGTTATATGTCTCCA-TA-TCTATTT-AATTTTG-TTTTCCATACA--GACGATTATAA--AATGC-AATGATGGGGT---TGAGGGAGGGTGGGGGT---ATGTC-TTCTTAACTTTAATATTTAATTTTGCTTT-CCATCCAGACAGACGTCTA-TCAT---TCCTGTTGGTGAAAATGAA-TGTTTTTAGGGAAAAAACAGGGAAAAGCGGCTAAAGGTAAAC--A-TCATAAAT-CTGTAA-AAAATAATTAAAGGATAGAATGTCAACATTTTAATTTAAAAAATGAAATTGCTAATGATATA------TTAATGAAAA----------------------TAG--CCATGATCTACA------ATGAA-TCTC-AATTAAACTTAA-TTTTAAATT-GCGAGTATGA-TTT--TTATTGA-TTTTAGAA-ATAC-ACATCCTAGCAGGATCC-AT-GCAACTGAAAGC-GCATAAGATTTTTTCCAGCA-TGTG---A-AATA---TTGCAATATATCACTGAAAAGAACTGGAGTAGGTGGTGGCTGAAGGCTTTGTGTTT-G-GAAAAAAAATATGTTGT-A-ACCATTGAACATCC-TTGGAAAAACTATTCTAGTc
gi|7 : cAGGGAAAAGCAATTTTATGTAAGCA-AATTATATATTCTGTAATAAAA---------GATAC-ACAT-AAC-TTTT-ATTT--AGAATAAAATCGCTAATGAGATACATGAATT-ATGAAACGTATCCAGA--------AATATTTCAATCATAATTTACA------ATAAATTCTCAAGTTACATTT-----TT-AATTTGTGATTATGATTTTTTTTATTGA-TTTTAGAATGTGT-ACTTCCTAGTAG--TCTTATGGCAACTGAGAGCAGTAT-AGGTTTAATT----ATTGCGTCTACAATACCCCTGGAATATGTCCCTC-AAAGAGCT---GGAGGAGGTGGCCGAAGGCGTTGTGTTT-A-AAAACAAAATATGTTGT-A-ACCGTTGAAAATCCTTTGAAAAAAATGTTTTAATA------TAAT--ATCTTGACTAGAGAAAATTATTTATTAGAGTTAAATGAATAT
gi|8 : TTCAAACTGACAATAAATTAAATCCATGAG-AAAATTCTAATG-AACAAGTTTTACCTTGCATGTACATTTATAAATGCACTAAACTATGAATCACTGTTGTTAT---------------AA--TTAT-AAAGTTTCGTTATTCAT--TTTGTTATCAGATGAGTA--TTTAATATTTTTTAT---AAGATAG-ACTAATTATAG-TAAAGGT--T-AGCAATTATT-----GTATTTA-GAATCGAGGA
gi|8 : tAACTTTGCAGTATCT------A-T--AAGGTTCAATGTAACATATTTAATACCCTGGTACCTTTTTTTCAATCTTATTTCAGAGTCGCATCAACATCATGTTTATTG-ACGT--TG-AATCAA-CGTC-A-TATTTCAAtttcaacattatgttgaccatttttcagcatctactattaactttgcagtatctataaggttcaatgtaacatatttaataccctggtacctttttttcaatcttatttcagagtcgcatcaacatcatgtttattgacgttgaatcaacgtcatatttcaa
gi|9 : tttcaaactgacaataaattaaatccatgagaaaattctaatgaacaagttttaccttgcatgtacatttataaatgcactaaactatgaatcactgttgttataattataaagtttcgttattcattttgttatcagatgagtatttaatattttttataagatagactaattatagtaaaggttagcaattattgtatttagaatcgaggatttcaacattatgttgaccatttttcagcatctactattACG-TT-GAATTCCGACG-TTGTTTCGACG------TCA------TCGAC-------------CTCGGTTCAATTAACTAAATCAAACATCTTTCAACGTCATTTCATCGTC-GAAATACAACGATATACGTTGGTTCA--AAGTTGAAATCCAATG-T--TGTGTC
gi|9 : TCGACCTCGGTTCA-ATT---------------------A-AC----TA-AATCAAACATC-----TTTCAACGTCAT--T--TCA-TC-GTCGAAATACAA--------CGATATACGTTGGTTCAAAG-TT-GAAATCCAATG-TTGTGTCAACG------TCAGA--TTTCGAC-------------GTCGGTTCAATTATCAAAATCAAATATCTTTCAACGTCATTTCAACGTC-GAAATGCG-------ACGTTGTTTTA--ACGTTGTA--TCAACGTTGATGTGCCTaacgtcagatttcgacgtcggttcaattatcaaaatcaaatatctttcaacgtcatttcaacgtcgaaatgcgacgttgttttaacgttgtatcaacgttgatgtgcct
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|15 ): GGAATTCTTTTAGAGAGAGTAACTATCTTCAACTCAACATACATGTATATATTTAATT
Unaligned ( gi|16 ): CTGGGAAATAAGCTTACGATCGACTCGAGCTGTCATGGGTATGTATAT
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 222 222222 1 1 111 11 1 333333333 111 1 11 222 1 11 11 111 1111 11 111 1111 111111 1111 2222 1 1 1 1 11 111111 1 22222222 111111 111 1 11 11 1 1 1 11111 111 1 4444444444444444444444444444444444444444444444444444444444444444444444 111111 11 11 22 111 11 111 11 1111 11 111 22 444444444 1 22222222 1 66666666666 77777777777777777777777 11 111 2 11 1 4444444444 1 111 1111 222222222222222 33333333333333 3333333 22222222222 11 11
lowQualScore : 000 888888 0 0 777 3 11 0 3 1 8 5 8 0 8 0 0 8 666666666 111 8 8 8 8 8 0 0 0 0 8 3 0 11 8 0 8 999 8 8 1 5 8 11 1 11 8 333 1111 11 8 0 8 666 8 2222 22 0 333333 1 0000 1 5555 1 7 3 6 3 3 3 88 1 999999 1 7777 00000000 5 666666 5 5 1 5 888 5 1 4 55 5 5 5 55 2 4 5 1 1 33 0 00000 222 1 5 5 6 1 5 5 0 5 5 0 1 1 8 0000000000000000000000000000000000000000000000000000000000000000000000 0 6 3 6 7 3 6 8 1 1 1 0 666666 1 8 1 11 8 11 11 88 444 11 55 777 22 3 4444 11 2 111 99 222222222 0 99999999 3 9 0 0 3 55555555555 5 0 77777777777777777777777 11 8 8 666 0 7 33 7 7 5 2222222222 0 1 0 444 7777 1 6 000000000000000 66666666666666 0 1 3 5 2222222 66 444 99999999999 44 22 66 1
lowQualScore : ... ...... . . ... . .. . . . . . . . . . . . ......... ... . . . . . . . . . . . . .. . . . ... . . . . . .. . .. . ... .... .. . . . ... . .... .. . ...... . .... . .... . . . . . . . .. . ...... . .... ........ . ...... . . . . ... . . . .. . . . .. . . . . . .. . ..... ... . . . . . . . . . . . . . . ...................................................................... . . . . . . . . . . . . ...... . . . .. . .. .. .. ... .. .. ... .. . .... .. . ... .. ......... . ........ . . . . . ........... . . ....................... .. . . ... . . .. . . . .......... . . . ... .... . . ............... .............. . . . . ....... .. ... ........... .. .. .. .
lowQualScore : 000 888888 0 0 555 2 22 0 2 4 0 6 0 6 0 8 8 0 222222222 000 0 0 0 0 0 8 8 6 8 0 2 8 00 0 8 0 000 0 0 4 8 0 00 4 00 0 888 8888 22 0 8 0 111 0 6666 00 8 000000 4 4444 0 0000 7 3 7 7 3 3 3 33 0 222222 4 7777 77777777 0 444444 0 0 4 7 111 7 4 1 77 7 0 7 77 0 3 0 4 0 66 6 11111 111 4 7 7 6 7 7 7 7 7 0 8 0 4 0 0000000000000000000000000000000000000000000000000000000000000000000000 8 7 2 7 5 2 7 8 4 4 0 6 666666 0 0 0 00 0 66 00 44 000 00 88 555 55 2 8888 00 5 222 00 222222222 0 88888888 2 2 0 8 2 77777777777 6 8 22222222222222222222222 00 0 0 888 8 8 88 0 0 5 5555555555 8 5 4 000 0000 3 7 000000000000000 88888888888888 2 3 6 0 5555555 99 666 88888888888 77 00 55 0
consensus : NNNNACATGTACGCGTAGCATTATTA------TATCAGAACAAAT-TTCAGTG-AATGACTGCAAATTGT---CAAGTGTCAGA-ATGGAAAGAA-TAGAAAATTGGATGACTTTTCGAAGTACTCGTAAATTAGTATTGTTTTAAATTT-ATTCCATTA-TTTATTAAAGATGGGG-ATTATCTTATCCTTATGAAATATTTTTACAA-TGTGGAAGAATGAAAATATTTCAT----ATAATATATCAA-T-AAGAT-AAATTA-CAAAA-T-G-AGACAGACTGTGTAAAGACATTTTTTA-GTGGTGGTGATGGTTG--TG-GTTGTAAC-TGTAAGTTACATGTCTCCA-TA-TTTTTTTAAATTTTG-TTTTCCATACA--GACGTTTATAA--AATGC-CATGATGGGGTG-GGGAGGGA-GGTGGGGGTAACATGTC-TTCTTAACTTTCATATTTAATTTTGTTTT-CCATCCAGACAGACGTCTA-TCATATGCCATGTTGGTGAAAATGAAGTGTTTTTGGGGAAANAACAGGGAAAAGCNGCTAAAGGTAAACA-A-TTATATACACTGTAATAAAATAATAAAAGGATAG-ATAT-AACATTTT-ATTT--AAAATGAAATTGCTAATGANATA------TT-ATGAAAAATATCCAGA--------AATATTAGAATCATGATCTACA------ATAAATTCTCAAATTAAACTTAA-TTTT-AATT-GCGATTATGATTTT--TTATTGA-TTTTAGAATGTGT-ACTTCCTAGCAG--TCCTATGGCAACTGAAAGCAGCAT-AGATTTANTTCAACATTGTG---A-AATA--CCTGAAATATATCCCTG-AAAGAACTGGAGGAGGAGGTGGCTGAAGGCTTTGTGTTT-G-AAAAAAAAATNTGTTGT-A-ACCGTTGACAATCC-TTGGAAAAAATATTCTAATATACTAGTAATCAATCTTGACAGGAGAAAATTATCTGTTAGGG-TAAATGAATGTTGTGGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTNNNNNNNNNNNNNNNNNNNATCTTTAAATTGACATTAAATTGAACCCATGAG-AAAAAGCTAATG-AACTAATTTTACCTT-CATGTACATTTTTAAATGNACTGAACTACGTATCACTTTTGTTATATTTTGCTATG-CAAAA--TTAT-ACAGTTTCATCATTCAT--TTTATTGTCA-AT---TA--TTTAATCTTTTTTAT---GAAATAG-ACTAATTATTGTTAAGGGG--T-AGAGA-NATTCAAA-ACATTTG-GAATGAAGGAAGTTA-----GGAAATTAGCAGT-TGT------A-TTTAATGTTCAAT-TAATATACTCAATAC----------TTTTTTCAATCTTATTTCAGAGT---------------------G-ACGT--TG-AATCAA-CGTC-A-GATTTCGACGT-CGGT--TCAATTAACAAAATACAAA-------CGACGTNCGTT---TCAACG-TTCGAAATCCGACG-TTGTTTCGACG------TCAGA--TTTCGAC-------------GTCGGTTCAATTAACAAAATCAAACATCTTTCAACGTCATTTCAACGTC-GAAATGCG-------ACGTTGTTTCA--ACGTTGAA--TCAACG-TGATGTGCCTGCTGGGTTAGTGNNCGTTCTNGNTAAGTCC
Reference ( family-895 ) : NNNNACATGTACGCGTAGCATTATTA------TATCAGAACAAAT-TTCAGTG-AATGACTGCAAATTGT---CAAGTGTCAGA-ATGGAAAGAA-TAGAAAATTGGATGACTTTTCGAAGTACTCGTAAATTAGTATTGTTTTAAATTT-ATTCCATTA-TTTATTAAAGATGGGG-ATTATCTTATCCTTATGAAATATTTTTACAA-TGTGGAAGAATGAAAATATTTCAT----ATAATATATCAA-T-AAGAT-AAATTA-CAAAA-T-G-AGACAGACTGTGTAAAGACATTTTTTA-GTGGTGGTGATGGTTG--TG-GTTGTAAC-TGTAAGTTACATGTCTCCA-TA-TTTTTTTAAATTTTG-TTTTCCATACA--GACGTTTATAA--AATGC-CATGATGGGGTG-GGGAGGGA-GGTGGGGGTAACATGTC-TTCTTAACTTTCATATTTAATTTTGTTTT-CCATCCAGACAGACGTCTA-TCATATGCCATGTTGGTGAAAATGAAGTGTTTTTGGGGAAANAACAGGGAAAAGCNGCTAAAGGTAAACA-A-TTATATACACTGTAATAAAATAATAAAAGGATAG-ATAT-AACATTTT-ATTT--AAAATGAAATTGCTAATGANATA------TT-ATGAAAAATATCCAGA--------AATATTAGAATCATGATCTACA------ATAAATTCTCAAATTAAACTTAA-TTTT-AATT-GCGATTATGATTTT--TTATTGA-TTTTAGAATGTGT-ACTTCCTAGCAG--TCCTATGGCAACTGAAAGCAGCAT-AGATTTANTTCAACATTGTG---A-AATA--CCTGAAATATATCCCTG-AAAGAACTGGAGGAGGAGGTGGCTGAAGGCTTTGTGTTT-G-AAAAAAAAATNTGTTGT-A-ACCGTTGACAATCC-TTGGAAAAAATATTCTAATATACTAGTAATCAATCTTGACAGGAGAAAATTATCTGTTAGGG-TAAATGAATGTTGTGGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTNNNNNNNNNNNNNNNNNNNATCTTTAAATTGACATTAAATTGAACCCATGAG-AAAAAGCTAATG-AACTAATTTTACCTT-CATGTACATTTTTAAATGNACTGAACTACGTATCACTTTTGTTATATTTTGCTATG-CAAAA--TTAT-ACAGTTTCATCATTCAT--TTTATTGTCA-AT---TA--TTTAATCTTTTTTAT---GAAATAG-ACTAATTATTGTTAAGGGG--T-AGAGA-NATTCAAA-ACATTTG-GAATGAAGGAAGTTA-----GGAAATTAGCAGT-TGT------A-TTTAATGTTCAAT-TAATATACTCAATAC----------TTTTTTCAATCTTATTTCAGAGT---------------------G-ACGT--TG-AATCAA-CGTC-A-GATTTCGACGTACGGT--TCAATTAACAAAATACAAA-------CGACGTCCGTT---TCAACG-TTCGAAATCCGACG-TTGTTTCGACG------TCAGA--TTTCGAC-------------GTCGGTTCAATTAACAAAATCAAACATCTTTCAACGTCATTTCAACGTC-GAAATGCG-------ACGTTGTTTCA--ACGTTGAA--TCAACG-TGATGTGCCTGCTGGGTTAGTGNNCGTTCTNGNTAAGTCC
gi|1 : ACATGTAC---TAGCATTATTACATGTATATCAGGACAAAT-TGCAGTG-AATAACTGCAAATTGT---CAAGTGTCAGA-ATGGAAAGAA-TAGAGAAGTGGATGACTTTTCGAAGTACTCATAAATTAGTATTGTTTTAAATTT-ATTCCATTA-TTCATTAAAGATTGGG-ATTATTTTATCCTTATGAAATACTTTTATAA-TGTGGAAGAATGAAAATATTTCATTTTAATAATATATCAAAT-AAGAT-AAATCA-CAAAA-T-G-GGAC---CTGTGTAAAGACATTTCT-----AGTGGTGATAGTTACATG-GATGTAAC-TGTAA---ACATGTCTGCA-TA-TTTTTTTAAATTTTG-TTTTCCATACA--GACGTTTATAA--AATGC-CATGATGGGGTG-GGGAGGGA-GGTGGGGGTAACATGTC-TTCTTAACTTTCATATTTAATTTTGTTTT-CCATCCAGAC----GTCTA-TCAAATGCCAAGTTCGTGAAAATGAAGTGTT---GGGGAAATAA--GGGAAAAGCTGCTAAAGGTAAACATA-TTATATACACTGTAATAAAATAATAAAAGG-TAG-ATAT-CACATTTT-ATTT--AAAATGAAATTGCTAATGAGATA------TT-ATGGAAAATATCCAGATTTGCAGAAATATTAGAATCATGATCTACA------ATAACTTCTCAAATTAAACCTCA-TTTT-A-TT-GTGGTTATGGCATT--TTATTGA-TTTTAGAATGTGT-ACTTCCTAGCAG--TCCTATGGTAACTGAAAGCAGCAT-AGATTTATTTCAACATTGTG---A-AATA--CCTGAAATATATCCCTG-AAAGAACTGGAGGAGGAGGTGGCTGAAGGTTTTGTGTTT-G-AAAAAAAAATCTGTTGT-A-ACCGTTGACAATCC-TTGG-AAAGATATTTCAATATACTAGCAATCAATCTTGACAGGAGAAAATTATATGTTAGGG-TAAATGAATGTTGTGGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTT-------------------ATCTTTAAATTGACATTAAATTGAACCCATGAG-AAAAAGCTAATA-AAC------CATCTC-CATGTACATTTTTAAATGAATTGAACTATGTATCACTTTTGTTATATTTTGCTTTG-CAAAA--TTAT-ACAGTTTCATCATTCGT--TTTATTGTC--AT---TA--TTTAATCTTTTTTAT---GAAATAG-ACTAATTATTATTAAGGGG--T-AAAGA-AATTCAAA-ACATTT--GAATGAAGGAAGTTA-----GG--ATTAGCAAT-TGT------A-TTTAATGTTCAAT-TCATATACTCAGTAC-----------TTTTTCAATCTTATTTTAGAAT---------------------G-ACGT--TG-AATCAA-CGTCAA-GATTTCGACGTATGGCTGTCAATT-ACAAAATACGAA-------CAACATCTCTT---TCAACGTTTCGAAATTCGACGCTTGTTTCAACG------TCAGA--TTTCGAC-------------GTC-GTTCAATTAACAAAATCAAACATCTTTCAACG-CATTTCAACGTC-GAAATGCG-------ACGTTGTTTCA--ACGTTGAA--TCAATG-TGATGTGCCTGCTGGGTTAGTAGGCGTTC-AGATAAATCC
gi|10 : tacaAT-AAATTAACAAAC-T-G-AGGCAGACTGTGTA--GACATTTTTTAGGTGGTGGTGATGGTTG--AA-GTTGTAAC-TGTAA---ACATGTCTCCA-TATTTTTTTTTAATTTTGTTTTTCCATACA--GACGTTTATAA--AATGC-CATGATGGGGTG-GGGGAGGA-----GGGGCAACATGTCTTTCTTAACTTTCATA-TTAATTTTGTTTTCCCATCCAGACatttgcct
gi|11 : GGGG-ATTATCTTGTCCTTATGAAATACTTTAAAAAATGTGAAAGAATGAAAATATTTCAT----ATA
gi|12 : AATATATTT-AACGTCTTTTCA-CGTCCGAAATGCG-------A-ATTGTTTTATAACGATGGA----------AATGTGCCTGCTGGGT--GTGTTCGTTCTCGTTAAGTCCtcttgatagtccatcgggaaccgatgatgactttgtctatggactcagcgatgatgatgaatgtggct
gi|13 : -ATGGAAAGAA-TAGAAAATTGGATGACTTCTCTAAGTAATCATAAATTAGTATTGTCTTAAATTT-ATTCCATTA-TTTATTAAAGATGtgtatt
gi|14 : gggtgagACATGTACGCGTAGCATTATCA------TATCAGAACAAAT-TTCAGTC-AATGACTGAAAATTGT---CAAGTGTCAGA-
gi|17 : cctAACGTCATTTCAACGTC-GAAATGCG-------ACCTTGTTTCA--ACGT
gi|18 : GAG-AAAAAGTTAATG-AACTAATTTTACCTT-C
gi|2 : TAGCATTATTA------TATCAGAACAAAT-TTCAGTG-AATGACTGCAAATTGT---CAAGTGTCAGA--TGGAAAGAA-TAGAAAATTGGATGACTTTTCGAAGTACTCATAAATAAGTATTGTTTTAAATTT-ATTCCATTA-TTTAATAAAGATGGGGGATTATCTTATCCTTATGAAATATTTTTACAA-TGTGGAAGAATGAAAATATTTCAT----ATA---TATCAA-T-AAGATCAAATTA-CAAAA-TTG-AGGCAGACTGTGTAAAGACATTTTTTA-GTGGTGGTGATGGT-G--TGTGTTGTAAC-TGTAAA--ACATGTCTCCAATA-TTTTTTAAAATTTTG-TTTTCCATACA--GACGTTTATAA--AATGC-CATGATGGGG-----GAGGGG-GA---GGGTAACATGTC-TTCTTAACTTTCATATTTAATTTTGTTTT-CCATCCAGAC----GTCTAATCATATGCCATGTTGGTGAAAATGAAGT---TTTGGTGAAACAA--GGGAATAGCTGCTAAAGGTAAACAGA-TTATATACACTGTAATAAAATAATAAAAG-ATAG-ATAT-AACATTTT-ATTT--AAAATGAAATTGCTAATGATATA------TT-ATGAAAAATATCCAGA--------AATATTAGAATCATGATCTACA------ATAAATTCTCAAATGAAACTTAA-TTTT-A-TT-GTGATAATGATTTT--TCATTGA-TTTTAGAATGTGT-ACTTCCTAGCAG--TCCTATGGCAACTGAAAGCAGCAT-AAATTTAATTCAACACTGTG---A-AATA--CCTGACATATATCCCTG-AAAGAACTGGAGGAGGAGGTGGCTGAAGGCTTTGTGTTT-GAAAAAAAAAATCTGTTGT-A-ACCTTTGACAATCC-TTGG-AAAAATATTCTAACATACTAGTAATCAATCTTGACAGGAGAAAATTATCTCTTAGGG-TAAATGAATGTTGTGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATCTTTAAATTGACATTAAATTGAACCCATGAG-AAAAAGCTAATG-AACTAATTTTACCTT-CATGTACATTTTTAAAAG-------------ATCACTTTTGTTCCAGTTTGCTATG-CAAAA--TTAT-ACAGTTTCATC-TTCAT--TTTATTGTC--AT---TA--TTTAATCTTTTT
gi|3 : ataatactacGACGTCTA-TCATATGACAACTTGGTGAAT-TGAAGT---TTTCGGGAAA---CAGGGAAGAGCTGCTAAAGGTAAACA-AATTATATACACTGTAATAAAATAATAAAAG-ATAG-ATAT-AATATTTT-ATTT--AAAATGAAATTGCTAAT-AGATA------TT-ATGAAAAATA-CCAGA--------AATATTAGAATCATGATCTACA------ATAAATTCCGAAATTAAACTTAATTTTT-TATT-GTGATTATGA-TTT--TTATTGATTTTTAGAATGTGTAACTTCCTAGCAG--TTC-ATGGCAACTGAAAGCAGCAT-AGATTTAATTC--------------------CCTGAAATATATCCCAG-AAAGAACTGGAGGAGGAGATGGCTGAAGGCTTTGTG-TT-G-AAAAAAAAATCTGTTGT-AGGCCGTTGACAATCC-TTGGAAAAAATATTCTAATATACTTGTAATCAATCTTGACTGGAGAAAATTATCTGTTAGGG-TAAATGAATGTCGTGG-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATCTTT-AATTGACATTAAATTGAACCCATAAGAAAAAAGCT-ATGAAACTAA-TTTACCTA-CATGTACATTTTAAAATGAATTGAACTACGTATCACTTTTGTTATATTTTGCTATG-CAAAA--TTATAACAGTTTCAATATTCAT--TTTATTGTC--GT---TA--TTTAATC-TTTTTAT---GAAATA--ACCAATTATTGTTAAGGGG--TGAGAGA-TATTCAAA-A-ACTT--AAATGAAGGAAGTTA-----G---ATTAGCAGT-TGT------ATTTTAATGTTCAAT-TGATATACTCAATAC----------TTTTTTCAACCTTA-TTCAGAGT---------------------GCACGT--TGAAATCAA-CGCC-A-GATTTCGACGT-CGGT--TCAGTTAACAAAAT-CAAACATCTTTCAACGT-CATT---TCAACG--TCGAAATACAACG-TTGATTCAACGTTGAAATCCGACGTTTCAACGTCAGATTTCGACGTCGGTTCAATTAACAAAATCAAACATCTTTCGACGTCATTTCAACGTC-GAAATGCG-------ACGTTGTTTCA--ACGT-------------TGATGTGCCTGCTGGG-TAGT
gi|4 : T-ATGAAAAATATCCAGA--------AATATTAGAATCATAATCTACATGTACAATAAATTCTCAAATTAAACTCAA-TTTT-A-TT-GTGATTATGATTTTTTTTATTGA-TTATAGAATGTAT-ACTTCCTAGCAG--TCCTATGGCAGCTGAAAGCAGCAT-AGATTTAATTCAACATTGTG---A-AATA--CCTGAAATATATCCCTG-AAAGAACTGGAGGAGGAGGTGGCTGAAGGCTTTGTGTTT-G-AAAAAAATAT-TGATGT-A-ACCGTTGACAATCC-TTGGAAAAAATAGTCTAATATACTAGTAATCAATCTTGACAGGAGAAAATCATCTGTTAGGG-TAAATGAATGTTGTGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATCTTTAAATTGACATTATATTGAACCCATGAG-AA---------------AATTTTACCTT-CATGTACATTTTCAAATGCACTGAACTACATATCACTGTT-TTA------GTCATGACTAAATTTTAT-ACAGTTTCATCA-TCATTATTTATTGTCA-AT---TAAGTTTAAT-TTTTGTATTGAGAAATAGCACTAATTATTGTTAAGGGGCTT-AAAGA-GATTCAAAGACATTTGAGAATGAAGGAATGTAGGAAGGGAAATTAGCAAG-TGTGAATCCA-TTTAA-----AAA-TAAT-TACTCAcaattgaaaataaacttgccacgaactctgaccatctaagtatattt
gi|4 : TCCTATT-CAGAGT---------------------GGACGTAAGG-AGGCAA-CGTC-ATGATT-CGATGT-CGGT--TCAATTAACAAAAT-CAAA---------NNNNNNNNN---NNNNNN-NNNNNNNNNNNNNN-NNNNNNNNNNN------NNNNN--NNNNNNN-------------NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGATTCAACGTT-GAATTCCG-------ACGTTGTTTCG--ACGTC--A--TCGACgaatgacctagagaaccaagaaacggagtatacgtaataacgactcctattcagagtggacgtaaggaggcaacgtcatgattcgatgtcggttcaattaacaaaatcaaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncgattcaacgttgaattccgacgttgtttcgacgtcatcgacctcggttcaattaactaaatcaaacatctttcaacgtcatttcatcgtcgaaatacaacgatatacgttggttcaaagttgaaatccaatgttgtg
gi|4 : tatgaaaaatatccagaaatattagaatcataatctacatgtacaataaattctcaaattaaactcaattttattgtgattatgattttttttattgattatagaatgtatacttcctagcagtcctatggcagctgaaagcagcatagatttaattcaacattgtgaaatacctgaaatatatccctgaaagaactggaggaggaggtggctgaaggctttgtgtttgaaaaaaatattgatgtaaccgttgacaatccttggaaaaaatagtctaatatactagtaatcaatcttgacaggagaaaatcatctgttagggtaaatgaatgttgtggnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatctttaaattgacattatattgaacccatgagaaaattttaccttcatgtacattttcaaatgcactgaactacatatcactgttttagtcatgactaaattttatacagtttcatcatcattatttattgtcaattaagtttaatttttgtattgagaaatagcactaattattgttaaggggcttaaagagattcaaagacatttgagaatgaaggaatgtaggaagggaaattagcaagtgtgaatccatttaaaaataattactcagaatgacctagagaaccaagaaacggagtatacgtaataacgacCGAT---TCAACG-TT-GAATTCCGACG-TTGTTTCGACG------TCA------TCGAC-------------CTCGGTTCAATTAACTAAATCAAACATCTTTCAACGTCATTTCATCGTC-GAAATACAACGATATACGTTGGTTCA--AAGTTGAAATCCAATG-T--TGTGctcggttcaattaactaaatcaaacatctttcaacgtcatttcatcgtcgaaatacaacgatatacgttggttcaaagttgaaatccaatgttgtg
gi|5 : tatgaaaaatatccagaaatattagaatcataatctacatgtacaataaattctcaaattaaactcaattttattgtgattatgattttttttattgattatagaatgtatacttcctagcagtcctatggcagctgaaagcagcatagatttaattcaacattgtgaaatacctgaaatatatccctgaaagaactggaggaggaggtggctgaaggctttgtgtttgaaaaaaatattgatgtaaccgttgacaatccttggaaaaaatagtctaatatactagtaatcaatcttgacaggagaaaatcatctgttagggtaaatgaatgttgtggnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatctttaaattgacattatattgaacccatgagaaaattttaccttcatgtacattttcaaatgcactgaactacatatcactgttttagtcatgactaaattttatacagtttcatcatcattatttattgtcaattaagtttaatttttgtattgagaaatagcactaattattgttaaggggcttaaagagattcaaagacatttgagaatgaaggaatgtaggaagggaaattagcaagtgtgaatccatttaaaaataattactcagaatgacctagagaaccaagaaacggagtatacgtaataacgactcctattcagagtggacgtaaggaggcaacgtcatgattcgatgtcggttcaattaacaaaatcaaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTTA------TATAAGAACAAAAATTCAGTGCAATGACTGCAAATTGTGGTCAAG-GTCAAAGATGGAAAGAAATAGAAAAT-GGATGACTTTTCGACGTACTCGTAAATTAGTATTGTTTCATATTCAATTCC-TTATTTTATGAAAGATGGAG-A-TATC-TAT-CTTATGGAATATTTTTACAA-TGTGGAAGAATGAAAATATTTCAT----A----ATATCAT-TAAAAAT-AAATTA-CAAAA-T-GAAGACAGACT-TGTAAAGACA-TTTTTA-GT-GTGGTGATGGTTG--TG-GTTG-AGCTTGTAAGTTATATGTCTCCA-TA-TCTATTT-AATTTTG-TTTTCCATACAAGGACGATTATAAACAATGCAAATGATGGGTTGAGGGAG----GGTGGGGGT---ATGTC-TTCTTAACTTTAATATTTAATTTTGCTTT-CCATCCAGACAGACGTCTA-TCAT---TCCTGTTGGTGAAAATGAA-TGTTTTTAGGGAAAAAACAGGGAAAAGCGGCTAAAGGTAAAC--A-TCATAAAT-CTGTAA-AAAATAATTAAAGGATAGAATGTCAACATTTTAATTTAAAAAATGAAATTGCTAATGATATA------TTAATGAAAA----------------------TAG--CCATGATCTACA------ATGAA-TCTC-AATTAAACTTAA-TTTTAAATT-GCGAGTATGA-TTT--TTATTGA-TTTTAGAA-ATAC-ACATCCTAGCAGGATCC-AT-GCAACTGAAAGC-GCATAAGATTTTTTCCAGCA-TGTG---A-AATA---TTGCAATATATCACTGAAAAGAACTGGAGTAGGTGGTGGCTGAAGGCTTTGTGTTTGG-AAAAAAAAATATG-TGTAA-ACCATTGAACATCC-TTTGAAAAACTATTC
gi|6 : GTACTCGTAAATTAGTATTGTTTCATATTC-ATTCCCTTA-TTTATGAAAGATGGAG-ATTATCTTATCTTTATGGAATATTTTTACAA-TGTGGAAGAATGAAAATATTTCAT-------ATATATCAA-T-TAAAT-AAATTA-CAAAATT-G-AGACAGACTGTGTAAAGACA-TTTTTA-GTGGTGGTGATGGTTG--TG-GTTGTAGC-TGTAAGTTATATGTCTCCA-TA-TCTATTT-AATTTTG-TTTTCCATACA--GACGATTATAA--AATGC-AATGATGGGGT---TGAGGGAGGGTGGGGGT---ATGTC-TTCTTAACTTTAATATTTAATTTTGCTTT-CCATCCAGACAGACGTCTA-TCAT---TCCTGTTGGTGAAAATGAA-TGTTTTTAGGGAAAAAACAGGGAAAAGCGGCTAAAGGTAAAC--A-TCATAAAT-CTGTAA-AAAATAATTAAAGGATAGAATGTCAACATTTTAATTTAAAAAATGAAATTGCTAATGATATA------TTAATGAAAA----------------------TAG--CCATGATCTACA------ATGAA-TCTC-AATTAAACTTAA-TTTTAAATT-GCGAGTATGA-TTT--TTATTGA-TTTTAGAA-ATAC-ACATCCTAGCAGGATCC-AT-GCAACTGAAAGC-GCATAAGATTTTTTCCAGCA-TGTG---A-AATA---TTGCAATATATCACTGAAAAGAACTGGAGTAGGTGGTGGCTGAAGGCTTTGTGTTT-G-GAAAAAAAATATGTTGT-A-ACCATTGAACATCC-TTGGAAAAACTATTCTAGTc
gi|7 : cAGGGAAAAGCAATTTTATGTAAGCA-AATTATATATTCTGTAATAAAA---------GATAC-ACAT-AAC-TTTT-ATTT--AGAATAAAATCGCTAATGAGATACATGAATT-ATGAAACGTATCCAGA--------AATATTTCAATCATAATTTACA------ATAAATTCTCAAGTTACATTT-----TT-AATTTGTGATTATGATTTTTTTTATTGA-TTTTAGAATGTGT-ACTTCCTAGTAG--TCTTATGGCAACTGAGAGCAGTAT-AGGTTTAATT----ATTGCGTCTACAATACCCCTGGAATATGTCCCTC-AAAGAGCT---GGAGGAGGTGGCCGAAGGCGTTGTGTTT-A-AAAACAAAATATGTTGT-A-ACCGTTGAAAATCCTTTGAAAAAAATGTTTTAATA------TAAT--ATCTTGACTAGAGAAAATTATTTATTAGAGTTAAATGAATAT
gi|8 : TTCAAACTGACAATAAATTAAATCCATGAG-AAAATTCTAATG-AACAAGTTTTACCTTGCATGTACATTTATAAATGCACTAAACTATGAATCACTGTTGTTAT---------------AA--TTAT-AAAGTTTCGTTATTCAT--TTTGTTATCAGATGAGTA--TTTAATATTTTTTAT---AAGATAG-ACTAATTATAG-TAAAGGT--T-AGCAATTATT-----GTATTTA-GAATCGAGGA
gi|8 : tAACTTTGCAGTATCT------A-T--AAGGTTCAATGTAACATATTTAATACCCTGGTACCTTTTTTTCAATCTTATTTCAGAGTCGCATCAACATCATGTTTATTG-ACGT--TG-AATCAA-CGTC-A-TATTTCAAtttcaacattatgttgaccatttttcagcatctactattaactttgcagtatctataaggttcaatgtaacatatttaataccctggtacctttttttcaatcttatttcagagtcgcatcaacatcatgtttattgacgttgaatcaacgtcatatttcaa
gi|9 : tttcaaactgacaataaattaaatccatgagaaaattctaatgaacaagttttaccttgcatgtacatttataaatgcactaaactatgaatcactgttgttataattataaagtttcgttattcattttgttatcagatgagtatttaatattttttataagatagactaattatagtaaaggttagcaattattgtatttagaatcgaggatttcaacattatgttgaccatttttcagcatctactattACG-TT-GAATTCCGACG-TTGTTTCGACG------TCA------TCGAC-------------CTCGGTTCAATTAACTAAATCAAACATCTTTCAACGTCATTTCATCGTC-GAAATACAACGATATACGTTGGTTCA--AAGTTGAAATCCAATG-T--TGTGTC
gi|9 : TCGACCTCGGTTCA-ATT---------------------A-AC----TA-AATCAAACATC-----TTTCAACGT-CATT--TCA-TCGTCGAAATACAA--------CGATATACGTTGGTTCAAAG-TT-GAAATCCAATG-TTGTGTCAACG------TCAGA--TTTCGAC-------------GTCGGTTCAATTATCAAAATCAAATATCTTTCAACGTCATTTCAACGTC-GAAATGCG-------ACGTTGTTTTA--ACGTTGTA--TCAACGTTGATGTGCCTaacgtcagatttcgacgtcggttcaattatcaaaatcaaatatctttcaacgtcatttcaacgtcgaaatgcgacgttgttttaacgttgtatcaacgttgatgtgcct
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|15 ): GGAATTCTTTTAGAGAGAGTAACTATCTTCAACTCAACATACATGTATATATTTAATT
Unaligned ( gi|16 ): CTGGGAAATAAGCTTACGATCGACTCGAGCTGTCATGGGTATGTATAT
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 222 222222 1 1 111 11 1 333333333 111 1 11 222 1 11 11 111 1111 11 111 1111 111111 1111 2222 1 1 1 1 11 111111 1 22222222 111111 111 1 11 11 1 1 1 11111 111 1 4444444444444444444444444444444444444444444444444444444444444444444444 111111 11 11 22 111 11 111 11 1111 11 111 22 444444444 1 22222222 1 66666666666 77777777777777777777777 11 111 1 11 1 4444444444 1 111 1111 222222222222222 33333333333333 3333333 22222222222 11 11
lowQualScore : 000 888888 0 0 777 3 11 0 3 1 8 5 8 0 8 0 0 8 666666666 111 8 8 8 8 8 0 0 0 0 8 3 0 11 8 0 8 999 8 8 1 5 8 11 1 11 8 333 1111 11 8 0 8 666 8 2222 22 0 333333 1 0000 1 5555 1 7 3 6 3 3 3 88 1 999999 1 7777 00000000 5 666666 5 5 1 5 888 5 1 4 55 5 5 5 55 2 4 5 1 1 33 0 00000 222 1 5 5 6 1 5 5 0 5 5 0 1 1 8 0000000000000000000000000000000000000000000000000000000000000000000000 0 6 3 6 7 3 6 8 1 1 1 0 666666 1 8 1 11 8 11 11 88 444 11 55 777 22 3 4444 11 2 111 99 222222222 0 99999999 3 9 0 0 3 55555555555 5 0 77777777777777777777777 11 8 8 666 0 0 33 7 7 5 2222222222 0 0 0 444 7777 1 6 000000000000000 66666666666666 0 1 3 5 2222222 66 444 99999999999 44 22 66 1
lowQualScore : ... ...... . . ... . .. . . . . . . . . . . . ......... ... . . . . . . . . . . . . .. . . . ... . . . . . .. . .. . ... .... .. . . . ... . .... .. . ...... . .... . .... . . . . . . . .. . ...... . .... ........ . ...... . . . . ... . . . .. . . . .. . . . . . .. . ..... ... . . . . . . . . . . . . . . ...................................................................... . . . . . . . . . . . . ...... . . . .. . .. .. .. ... .. .. ... .. . .... .. . ... .. ......... . ........ . . . . . ........... . . ....................... .. . . ... . . .. . . . .......... . . . ... .... . . ............... .............. . . . . ....... .. ... ........... .. .. .. .
lowQualScore : 000 888888 0 0 555 2 22 0 2 4 0 6 0 6 0 8 8 0 222222222 000 0 0 0 0 0 8 8 6 8 0 2 8 00 0 8 0 000 0 0 4 8 0 00 4 00 0 888 8888 22 0 8 0 111 0 6666 00 8 000000 4 4444 0 0000 7 3 7 7 3 3 3 33 0 222222 4 7777 77777777 0 444444 0 0 4 7 111 7 4 1 77 7 0 7 77 0 3 0 4 0 66 6 11111 111 4 7 7 6 7 7 7 7 7 0 8 0 4 0 0000000000000000000000000000000000000000000000000000000000000000000000 8 7 2 7 5 2 7 8 4 4 0 6 666666 0 0 0 00 0 66 00 44 000 00 88 555 55 2 8888 00 5 222 00 222222222 0 88888888 2 2 0 8 2 77777777777 6 8 22222222222222222222222 00 0 0 888 8 0 88 0 0 5 5555555555 8 8 4 000 0000 3 7 000000000000000 88888888888888 2 3 6 0 5555555 99 666 88888888888 77 00 55 0
consensus : NNNNACATGTACGCGTAGCATTATTA------TATCAGAACAAAT-TTCAGTG-AATGACTGCAAATTGT---CAAGTGTCAGA-ATGGAAAGAA-TAGAAAATTGGATGACTTTTCGAAGTACTCGTAAATTAGTATTGTTTTAAATTT-ATTCCATTA-TTTATTAAAGATGGGG-ATTATCTTATCCTTATGAAATATTTTTACAA-TGTGGAAGAATGAAAATATTTCAT----ATAATATATCAA-T-AAGAT-AAATTA-CAAAA-T-G-AGACAGACTGTGTAAAGACATTTTTTA-GTGGTGGTGATGGTTG--TG-GTTGTAAC-TGTAAGTTACATGTCTCCA-TA-TTTTTTTAAATTTTG-TTTTCCATACA--GACGTTTATAA--AATGC-CATGATGGGGTG-GGGAGGGA-GGTGGGGGTAACATGTC-TTCTTAACTTTCATATTTAATTTTGTTTT-CCATCCAGACAGACGTCTA-TCATATGCCATGTTGGTGAAAATGAAGTGTTTTTGGGGAAANAACAGGGAAAAGCNGCTAAAGGTAAACA-A-TTATATACACTGTAATAAAATAATAAAAGGATAG-ATAT-AACATTTT-ATTT--AAAATGAAATTGCTAATGANATA------TT-ATGAAAAATATCCAGA--------AATATTAGAATCATGATCTACA------ATAAATTCTCAAATTAAACTTAA-TTTT-AATT-GCGATTATGATTTT--TTATTGA-TTTTAGAATGTGT-ACTTCCTAGCAG--TCCTATGGCAACTGAAAGCAGCAT-AGATTTANTTCAACATTGTG---A-AATA--CCTGAAATATATCCCTG-AAAGAACTGGAGGAGGAGGTGGCTGAAGGCTTTGTGTTT-G-AAAAAAAAATNTGTTGT-A-ACCGTTGACAATCC-TTGGAAAAAATATTCTAATATACTAGTAATCAATCTTGACAGGAGAAAATTATCTGTTAGGG-TAAATGAATGTTGTGGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTNNNNNNNNNNNNNNNNNNNATCTTTAAATTGACATTAAATTGAACCCATGAG-AAAAAGCTAATG-AACTAATTTTACCTT-CATGTACATTTTTAAATGNACTGAACTACGTATCACTTTTGTTATATTTTGCTATG-CAAAA--TTAT-ACAGTTTCATCATTCAT--TTTATTGTCA-AT---TA--TTTAATCTTTTTTAT---GAAATAG-ACTAATTATTGTTAAGGGG--T-AGAGA-NATTCAAA-ACATTTG-GAATGAAGGAAGTTA-----GGAAATTAGCAGT-TGT------A-TTTAATGTTCAAT-TAATATACTCAATAC----------TTTTTTCAATCTTATTTCAGAGT---------------------G-ACGT--TG-AATCAA-CGTC-A-GATTTCGACGT-CGGT--TCAATTAACAAAATACAAA-------CGACGTNCGTT---TCAACG-TTCGAAATCCGACG-TTGTTTCGACG------TCAGA--TTTCGAC-------------GTCGGTTCAATTAACAAAATCAAACATCTTTCAACGTCATTTCAACGTC-GAAATGCG-------ACGTTGTTTCA--ACGTTGAA--TCAACG-TGATGTGCCTGCTGGGTTAGTGNNCGTTCTNGNTAAGTCC
Reference ( family-895 ) : NNNNACATGTACGCGTAGCATTATTA------TATCAGAACAAAT-TTCAGTG-AATGACTGCAAATTGT---CAAGTGTCAGA-ATGGAAAGAA-TAGAAAATTGGATGACTTTTCGAAGTACTCGTAAATTAGTATTGTTTTAAATTT-ATTCCATTA-TTTATTAAAGATGGGG-ATTATCTTATCCTTATGAAATATTTTTACAA-TGTGGAAGAATGAAAATATTTCAT----ATAATATATCAA-T-AAGAT-AAATTA-CAAAA-T-G-AGACAGACTGTGTAAAGACATTTTTTA-GTGGTGGTGATGGTTG--TG-GTTGTAAC-TGTAAGTTACATGTCTCCA-TA-TTTTTTTAAATTTTG-TTTTCCATACA--GACGTTTATAA--AATGC-CATGATGGGGTG-GGGAGGGA-GGTGGGGGTAACATGTC-TTCTTAACTTTCATATTTAATTTTGTTTT-CCATCCAGACAGACGTCTA-TCATATGCCATGTTGGTGAAAATGAAGTGTTTTTGGGGAAANAACAGGGAAAAGCNGCTAAAGGTAAACA-A-TTATATACACTGTAATAAAATAATAAAAGGATAG-ATAT-AACATTTT-ATTT--AAAATGAAATTGCTAATGANATA------TT-ATGAAAAATATCCAGA--------AATATTAGAATCATGATCTACA------ATAAATTCTCAAATTAAACTTAA-TTTT-AATT-GCGATTATGATTTT--TTATTGA-TTTTAGAATGTGT-ACTTCCTAGCAG--TCCTATGGCAACTGAAAGCAGCAT-AGATTTANTTCAACATTGTG---A-AATA--CCTGAAATATATCCCTG-AAAGAACTGGAGGAGGAGGTGGCTGAAGGCTTTGTGTTT-G-AAAAAAAAATNTGTTGT-A-ACCGTTGACAATCC-TTGGAAAAAATATTCTAATATACTAGTAATCAATCTTGACAGGAGAAAATTATCTGTTAGGG-TAAATGAATGTTGTGGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTNNNNNNNNNNNNNNNNNNNATCTTTAAATTGACATTAAATTGAACCCATGAG-AAAAAGCTAATG-AACTAATTTTACCTT-CATGTACATTTTTAAATGNACTGAACTACGTATCACTTTTGTTATATTTTGCTATG-CAAAA--TTAT-ACAGTTTCATCATTCAT--TTTATTGTCA-AT---TA--TTTAATCTTTTTTAT---GAAATAG-ACTAATTATTGTTAAGGGG--T-AGAGA-NATTCAAA-ACATTTG-GAATGAAGGAAGTTA-----GGAAATTAGCAGT-TGT------A-TTTAATGTTCAAT-TAATATACTCAATAC----------TTTTTTCAATCTTATTTCAGAGT---------------------G-ACGT--TG-AATCAA-CGTC-A-GATTTCGACGT-CGGT--TCAATTAACAAAATACAAA-------CGACGTNCGTT---TCAACG-TTCGAAATCCGACG-TTGTTTCGACG------TCAGA--TTTCGAC-------------GTCGGTTCAATTAACAAAATCAAACATCTTTCAACGTCATTTCAACGTC-GAAATGCG-------ACGTTGTTTCA--ACGTTGAA--TCAACG-TGATGTGCCTGCTGGGTTAGTGNNCGTTCTNGNTAAGTCC
gi|1 : ACATGTAC---TAGCATTATTACATGTATATCAGGACAAAT-TGCAGTG-AATAACTGCAAATTGT---CAAGTGTCAGA-ATGGAAAGAA-TAGAGAAGTGGATGACTTTTCGAAGTACTCATAAATTAGTATTGTTTTAAATTT-ATTCCATTA-TTCATTAAAGATTGGG-ATTATTTTATCCTTATGAAATACTTTTATAA-TGTGGAAGAATGAAAATATTTCATTTTAATAATATATCAAAT-AAGAT-AAATCA-CAAAA-T-G-GGAC---CTGTGTAAAGACATTTCT-----AGTGGTGATAGTTACATG-GATGTAAC-TGTAA---ACATGTCTGCA-TA-TTTTTTTAAATTTTG-TTTTCCATACA--GACGTTTATAA--AATGC-CATGATGGGGTG-GGGAGGGA-GGTGGGGGTAACATGTC-TTCTTAACTTTCATATTTAATTTTGTTTT-CCATCCAGAC----GTCTA-TCAAATGCCAAGTTCGTGAAAATGAAGTGTT---GGGGAAATAA--GGGAAAAGCTGCTAAAGGTAAACATA-TTATATACACTGTAATAAAATAATAAAAGG-TAG-ATAT-CACATTTT-ATTT--AAAATGAAATTGCTAATGAGATA------TT-ATGGAAAATATCCAGATTTGCAGAAATATTAGAATCATGATCTACA------ATAACTTCTCAAATTAAACCTCA-TTTT-A-TT-GTGGTTATGGCATT--TTATTGA-TTTTAGAATGTGT-ACTTCCTAGCAG--TCCTATGGTAACTGAAAGCAGCAT-AGATTTATTTCAACATTGTG---A-AATA--CCTGAAATATATCCCTG-AAAGAACTGGAGGAGGAGGTGGCTGAAGGTTTTGTGTTT-G-AAAAAAAAATCTGTTGT-A-ACCGTTGACAATCC-TTGG-AAAGATATTTCAATATACTAGCAATCAATCTTGACAGGAGAAAATTATATGTTAGGG-TAAATGAATGTTGTGGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTT-------------------ATCTTTAAATTGACATTAAATTGAACCCATGAG-AAAAAGCTAATA-AAC------CATCTC-CATGTACATTTTTAAATGAATTGAACTATGTATCACTTTTGTTATATTTTGCTTTG-CAAAA--TTAT-ACAGTTTCATCATTCGT--TTTATTGTC--AT---TA--TTTAATCTTTTTTAT---GAAATAG-ACTAATTATTATTAAGGGG--T-AAAGA-AATTCAAA-ACATTT--GAATGAAGGAAGTTA-----GG--ATTAGCAAT-TGT------A-TTTAATGTTCAAT-TCATATACTCAGTAC-----------TTTTTCAATCTTATTTTAGAAT---------------------G-ACGT--TG-AATCAA-CGTCAA-GATTTCGACGTATGGCTGTCAATT-ACAAAATACGAA-------CAACATCTCTT---TCAACGTTTCGAAATTCGACGCTTGTTTCAACG------TCAGA--TTTCGAC-------------GTC-GTTCAATTAACAAAATCAAACATCTTTCAACG-CATTTCAACGTC-GAAATGCG-------ACGTTGTTTCA--ACGTTGAA--TCAATG-TGATGTGCCTGCTGGGTTAGTAGGCGTTC-AGATAAATCC
gi|10 : tacaAT-AAATTAACAAAC-T-G-AGGCAGACTGTGTA--GACATTTTTTAGGTGGTGGTGATGGTTG--AA-GTTGTAAC-TGTAA---ACATGTCTCCA-TATTTTTTTTTAATTTTGTTTTTCCATACA--GACGTTTATAA--AATGC-CATGATGGGGTG-GGGGAGGA-----GGGGCAACATGTCTTTCTTAACTTTCATA-TTAATTTTGTTTTCCCATCCAGACatttgcct
gi|11 : GGGG-ATTATCTTGTCCTTATGAAATACTTTAAAAAATGTGAAAGAATGAAAATATTTCAT----ATA
gi|12 : AATATATTT-AACGTCTTTTCA-CGTCCGAAATGCG-------A-ATTGTTTTATAACGATGGA----------AATGTGCCTGCTGGGT--GTGTTCGTTCTCGTTAAGTCCtcttgatagtccatcgggaaccgatgatgactttgtctatggactcagcgatgatgatgaatgtggct
gi|13 : -ATGGAAAGAA-TAGAAAATTGGATGACTTCTCTAAGTAATCATAAATTAGTATTGTCTTAAATTT-ATTCCATTA-TTTATTAAAGATGtgtatt
gi|14 : gggtgagACATGTACGCGTAGCATTATCA------TATCAGAACAAAT-TTCAGTC-AATGACTGAAAATTGT---CAAGTGTCAGA-
gi|17 : cctAACGTCATTTCAACGTC-GAAATGCG-------ACCTTGTTTCA--ACGT
gi|18 : GAG-AAAAAGTTAATG-AACTAATTTTACCTT-C
gi|2 : TAGCATTATTA------TATCAGAACAAAT-TTCAGTG-AATGACTGCAAATTGT---CAAGTGTCAGA--TGGAAAGAA-TAGAAAATTGGATGACTTTTCGAAGTACTCATAAATAAGTATTGTTTTAAATTT-ATTCCATTA-TTTAATAAAGATGGGGGATTATCTTATCCTTATGAAATATTTTTACAA-TGTGGAAGAATGAAAATATTTCAT----ATA---TATCAA-T-AAGATCAAATTA-CAAAA-TTG-AGGCAGACTGTGTAAAGACATTTTTTA-GTGGTGGTGATGGT-G--TGTGTTGTAAC-TGTAAA--ACATGTCTCCAATA-TTTTTTAAAATTTTG-TTTTCCATACA--GACGTTTATAA--AATGC-CATGATGGGG-----GAGGGG-GA---GGGTAACATGTC-TTCTTAACTTTCATATTTAATTTTGTTTT-CCATCCAGAC----GTCTAATCATATGCCATGTTGGTGAAAATGAAGT---TTTGGTGAAACAA--GGGAATAGCTGCTAAAGGTAAACAGA-TTATATACACTGTAATAAAATAATAAAAG-ATAG-ATAT-AACATTTT-ATTT--AAAATGAAATTGCTAATGATATA------TT-ATGAAAAATATCCAGA--------AATATTAGAATCATGATCTACA------ATAAATTCTCAAATGAAACTTAA-TTTT-A-TT-GTGATAATGATTTT--TCATTGA-TTTTAGAATGTGT-ACTTCCTAGCAG--TCCTATGGCAACTGAAAGCAGCAT-AAATTTAATTCAACACTGTG---A-AATA--CCTGACATATATCCCTG-AAAGAACTGGAGGAGGAGGTGGCTGAAGGCTTTGTGTTT-GAAAAAAAAAATCTGTTGT-A-ACCTTTGACAATCC-TTGG-AAAAATATTCTAACATACTAGTAATCAATCTTGACAGGAGAAAATTATCTCTTAGGG-TAAATGAATGTTGTGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATCTTTAAATTGACATTAAATTGAACCCATGAG-AAAAAGCTAATG-AACTAATTTTACCTT-CATGTACATTTTTAAAAG-------------ATCACTTTTGTTCCAGTTTGCTATG-CAAAA--TTAT-ACAGTTTCATC-TTCAT--TTTATTGTC--AT---TA--TTTAATCTTTTT
gi|3 : ataatactacGACGTCTA-TCATATGACAACTTGGTGAAT-TGAAGT---TTTCGGGAAA---CAGGGAAGAGCTGCTAAAGGTAAACA-AATTATATACACTGTAATAAAATAATAAAAG-ATAG-ATAT-AATATTTT-ATTT--AAAATGAAATTGCTAAT-AGATA------TT-ATGAAAAATA-CCAGA--------AATATTAGAATCATGATCTACA------ATAAATTCCGAAATTAAACTTAATTTTT-TATT-GTGATTATGA-TTT--TTATTGATTTTTAGAATGTGTAACTTCCTAGCAG--TTC-ATGGCAACTGAAAGCAGCAT-AGATTTAATTC--------------------CCTGAAATATATCCCAG-AAAGAACTGGAGGAGGAGATGGCTGAAGGCTTTGTG-TT-G-AAAAAAAAATCTGTTGT-AGGCCGTTGACAATCC-TTGGAAAAAATATTCTAATATACTTGTAATCAATCTTGACTGGAGAAAATTATCTGTTAGGG-TAAATGAATGTCGTGG-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATCTTT-AATTGACATTAAATTGAACCCATAAGAAAAAAGCT-ATGAAACTAA-TTTACCTA-CATGTACATTTTAAAATGAATTGAACTACGTATCACTTTTGTTATATTTTGCTATG-CAAAA--TTATAACAGTTTCAATATTCAT--TTTATTGTC--GT---TA--TTTAATC-TTTTTAT---GAAATA--ACCAATTATTGTTAAGGGG--TGAGAGA-TATTCAAA-A-ACTT--AAATGAAGGAAGTTA-----G---ATTAGCAGT-TGT------ATTTTAATGTTCAAT-TGATATACTCAATAC----------TTTTTTCAACCTTA-TTCAGAGT---------------------GCACGT--TGAAATCAA-CGCC-A-GATTTCGACGT-CGGT--TCAGTTAACAAAAT-CAAACATCTTTCAACGT-CATT---TCAACG--TCGAAATACAACG-TTGATTCAACGTTGAAATCCGACGTTTCAACGTCAGATTTCGACGTCGGTTCAATTAACAAAATCAAACATCTTTCGACGTCATTTCAACGTC-GAAATGCG-------ACGTTGTTTCA--ACGT-------------TGATGTGCCTGCTGGG-TAGT
gi|4 : T-ATGAAAAATATCCAGA--------AATATTAGAATCATAATCTACATGTACAATAAATTCTCAAATTAAACTCAA-TTTT-A-TT-GTGATTATGATTTTTTTTATTGA-TTATAGAATGTAT-ACTTCCTAGCAG--TCCTATGGCAGCTGAAAGCAGCAT-AGATTTAATTCAACATTGTG---A-AATA--CCTGAAATATATCCCTG-AAAGAACTGGAGGAGGAGGTGGCTGAAGGCTTTGTGTTT-G-AAAAAAATAT-TGATGT-A-ACCGTTGACAATCC-TTGGAAAAAATAGTCTAATATACTAGTAATCAATCTTGACAGGAGAAAATCATCTGTTAGGG-TAAATGAATGTTGTGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATCTTTAAATTGACATTATATTGAACCCATGAG-AA---------------AATTTTACCTT-CATGTACATTTTCAAATGCACTGAACTACATATCACTGTT-TTA------GTCATGACTAAATTTTAT-ACAGTTTCATCA-TCATTATTTATTGTCA-AT---TAAGTTTAAT-TTTTGTATTGAGAAATAGCACTAATTATTGTTAAGGGGCTT-AAAGA-GATTCAAAGACATTTGAGAATGAAGGAATGTAGGAAGGGAAATTAGCAAG-TGTGAATCCA-TTTAA-----AAA-TAAT-TACTCAcaattgaaaataaacttgccacgaactctgaccatctaagtatattt
gi|4 : TCCTATT-CAGAGT---------------------GGACGTAAGG-AGGCAA-CGTC-ATGATT-CGATGT-CGGT--TCAATTAACAAAAT-CAAA---------NNNNNNNNN---NNNNNN-NNNNNNNNNNNNNN-NNNNNNNNNNN------NNNNN--NNNNNNN-------------NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGATTCAACGTT-GAATTCCG-------ACGTTGTTTCG--ACGTC--A--TCGACgaatgacctagagaaccaagaaacggagtatacgtaataacgactcctattcagagtggacgtaaggaggcaacgtcatgattcgatgtcggttcaattaacaaaatcaaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncgattcaacgttgaattccgacgttgtttcgacgtcatcgacctcggttcaattaactaaatcaaacatctttcaacgtcatttcatcgtcgaaatacaacgatatacgttggttcaaagttgaaatccaatgttgtg
gi|4 : tatgaaaaatatccagaaatattagaatcataatctacatgtacaataaattctcaaattaaactcaattttattgtgattatgattttttttattgattatagaatgtatacttcctagcagtcctatggcagctgaaagcagcatagatttaattcaacattgtgaaatacctgaaatatatccctgaaagaactggaggaggaggtggctgaaggctttgtgtttgaaaaaaatattgatgtaaccgttgacaatccttggaaaaaatagtctaatatactagtaatcaatcttgacaggagaaaatcatctgttagggtaaatgaatgttgtggnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatctttaaattgacattatattgaacccatgagaaaattttaccttcatgtacattttcaaatgcactgaactacatatcactgttttagtcatgactaaattttatacagtttcatcatcattatttattgtcaattaagtttaatttttgtattgagaaatagcactaattattgttaaggggcttaaagagattcaaagacatttgagaatgaaggaatgtaggaagggaaattagcaagtgtgaatccatttaaaaataattactcagaatgacctagagaaccaagaaacggagtatacgtaataacgacCGAT---TCAACG-TT-GAATTCCGACG-TTGTTTCGACG------TCA------TCGAC-------------CTCGGTTCAATTAACTAAATCAAACATCTTTCAACGTCATTTCATCGTC-GAAATACAACGATATACGTTGGTTCA--AAGTTGAAATCCAATG-T--TGTGctcggttcaattaactaaatcaaacatctttcaacgtcatttcatcgtcgaaatacaacgatatacgttggttcaaagttgaaatccaatgttgtg
gi|5 : tatgaaaaatatccagaaatattagaatcataatctacatgtacaataaattctcaaattaaactcaattttattgtgattatgattttttttattgattatagaatgtatacttcctagcagtcctatggcagctgaaagcagcatagatttaattcaacattgtgaaatacctgaaatatatccctgaaagaactggaggaggaggtggctgaaggctttgtgtttgaaaaaaatattgatgtaaccgttgacaatccttggaaaaaatagtctaatatactagtaatcaatcttgacaggagaaaatcatctgttagggtaaatgaatgttgtggnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatctttaaattgacattatattgaacccatgagaaaattttaccttcatgtacattttcaaatgcactgaactacatatcactgttttagtcatgactaaattttatacagtttcatcatcattatttattgtcaattaagtttaatttttgtattgagaaatagcactaattattgttaaggggcttaaagagattcaaagacatttgagaatgaaggaatgtaggaagggaaattagcaagtgtgaatccatttaaaaataattactcagaatgacctagagaaccaagaaacggagtatacgtaataacgactcctattcagagtggacgtaaggaggcaacgtcatgattcgatgtcggttcaattaacaaaatcaaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTTA------TATAAGAACAAAAATTCAGTGCAATGACTGCAAATTGTGGTCAAG-GTCAAAGATGGAAAGAAATAGAAAAT-GGATGACTTTTCGACGTACTCGTAAATTAGTATTGTTTCATATTCAATTCC-TTATTTTATGAAAGATGGAG-A-TATC-TAT-CTTATGGAATATTTTTACAA-TGTGGAAGAATGAAAATATTTCAT----A----ATATCAT-TAAAAAT-AAATTA-CAAAA-T-GAAGACAGACT-TGTAAAGACA-TTTTTA-GT-GTGGTGATGGTTG--TG-GTTG-AGCTTGTAAGTTATATGTCTCCA-TA-TCTATTT-AATTTTG-TTTTCCATACAAGGACGATTATAAACAATGCAAATGATGGGTTGAGGGAG----GGTGGGGGT---ATGTC-TTCTTAACTTTAATATTTAATTTTGCTTT-CCATCCAGACAGACGTCTA-TCAT---TCCTGTTGGTGAAAATGAA-TGTTTTTAGGGAAAAAACAGGGAAAAGCGGCTAAAGGTAAAC--A-TCATAAAT-CTGTAA-AAAATAATTAAAGGATAGAATGTCAACATTTTAATTTAAAAAATGAAATTGCTAATGATATA------TTAATGAAAA----------------------TAG--CCATGATCTACA------ATGAA-TCTC-AATTAAACTTAA-TTTTAAATT-GCGAGTATGA-TTT--TTATTGA-TTTTAGAA-ATAC-ACATCCTAGCAGGATCC-AT-GCAACTGAAAGC-GCATAAGATTTTTTCCAGCA-TGTG---A-AATA---TTGCAATATATCACTGAAAAGAACTGGAGTAGGTGGTGGCTGAAGGCTTTGTGTTTGG-AAAAAAAAATATG-TGTAA-ACCATTGAACATCC-TTTGAAAAACTATTC
gi|6 : GTACTCGTAAATTAGTATTGTTTCATATTC-ATTCCCTTA-TTTATGAAAGATGGAG-ATTATCTTATCTTTATGGAATATTTTTACAA-TGTGGAAGAATGAAAATATTTCAT-------ATATATCAA-T-TAAAT-AAATTA-CAAAATT-G-AGACAGACTGTGTAAAGACA-TTTTTA-GTGGTGGTGATGGTTG--TG-GTTGTAGC-TGTAAGTTATATGTCTCCA-TA-TCTATTT-AATTTTG-TTTTCCATACA--GACGATTATAA--AATGC-AATGATGGGGT---TGAGGGAGGGTGGGGGT---ATGTC-TTCTTAACTTTAATATTTAATTTTGCTTT-CCATCCAGACAGACGTCTA-TCAT---TCCTGTTGGTGAAAATGAA-TGTTTTTAGGGAAAAAACAGGGAAAAGCGGCTAAAGGTAAAC--A-TCATAAAT-CTGTAA-AAAATAATTAAAGGATAGAATGTCAACATTTTAATTTAAAAAATGAAATTGCTAATGATATA------TTAATGAAAA----------------------TAG--CCATGATCTACA------ATGAA-TCTC-AATTAAACTTAA-TTTTAAATT-GCGAGTATGA-TTT--TTATTGA-TTTTAGAA-ATAC-ACATCCTAGCAGGATCC-AT-GCAACTGAAAGC-GCATAAGATTTTTTCCAGCA-TGTG---A-AATA---TTGCAATATATCACTGAAAAGAACTGGAGTAGGTGGTGGCTGAAGGCTTTGTGTTT-G-GAAAAAAAATATGTTGT-A-ACCATTGAACATCC-TTGGAAAAACTATTCTAGTc
gi|7 : cAGGGAAAAGCAATTTTATGTAAGCA-AATTATATATTCTGTAATAAAA---------GATAC-ACAT-AAC-TTTT-ATTT--AGAATAAAATCGCTAATGAGATACATGAATT-ATGAAACGTATCCAGA--------AATATTTCAATCATAATTTACA------ATAAATTCTCAAGTTACATTT-----TT-AATTTGTGATTATGATTTTTTTTATTGA-TTTTAGAATGTGT-ACTTCCTAGTAG--TCTTATGGCAACTGAGAGCAGTAT-AGGTTTAATT----ATTGCGTCTACAATACCCCTGGAATATGTCCCTC-AAAGAGCT---GGAGGAGGTGGCCGAAGGCGTTGTGTTT-A-AAAACAAAATATGTTGT-A-ACCGTTGAAAATCCTTTGAAAAAAATGTTTTAATA------TAAT--ATCTTGACTAGAGAAAATTATTTATTAGAGTTAAATGAATAT
gi|8 : TTCAAACTGACAATAAATTAAATCCATGAG-AAAATTCTAATG-AACAAGTTTTACCTTGCATGTACATTTATAAATGCACTAAACTATGAATCACTGTTGTTAT---------------AA--TTAT-AAAGTTTCGTTATTCAT--TTTGTTATCAGATGAGTA--TTTAATATTTTTTAT---AAGATAG-ACTAATTATAG-TAAAGGT--T-AGCAATTATT-----GTATTTA-GAATCGAGGA
gi|8 : tAACTTTGCAGTATCT------A-T--AAGGTTCAATGTAACATATTTAATACCCTGGTACCTTTTTTTCAATCTTATTTCAGAGTCGCATCAACATCATGTTTATTG-ACGT--TG-AATCAA-CGTC-A-TATTTCAAtttcaacattatgttgaccatttttcagcatctactattaactttgcagtatctataaggttcaatgtaacatatttaataccctggtacctttttttcaatcttatttcagagtcgcatcaacatcatgtttattgacgttgaatcaacgtcatatttcaa
gi|9 : tttcaaactgacaataaattaaatccatgagaaaattctaatgaacaagttttaccttgcatgtacatttataaatgcactaaactatgaatcactgttgttataattataaagtttcgttattcattttgttatcagatgagtatttaatattttttataagatagactaattatagtaaaggttagcaattattgtatttagaatcgaggatttcaacattatgttgaccatttttcagcatctactattACG-TT-GAATTCCGACG-TTGTTTCGACG------TCA------TCGAC-------------CTCGGTTCAATTAACTAAATCAAACATCTTTCAACGTCATTTCATCGTC-GAAATACAACGATATACGTTGGTTCA--AAGTTGAAATCCAATG-T--TGTGTC
gi|9 : TCGACCTCGGTTCA-ATT---------------------A-AC----TA-AATCAAACATC-----TTTCAACGT-CATT--TCA-TCGTCGAAATACAA--------CGATATACGTTGGTTCAAAG-TT-GAAATCCAATG-TTGTGTCAACG------TCAGA--TTTCGAC-------------GTCGGTTCAATTATCAAAATCAAATATCTTTCAACGTCATTTCAACGTC-GAAATGCG-------ACGTTGTTTTA--ACGTTGTA--TCAACGTTGATGTGCCTaacgtcagatttcgacgtcggttcaattatcaaaatcaaatatctttcaacgtcatttcaacgtcgaaatgcgacgttgttttaacgttgtatcaacgttgatgtgcct
blockSeqs : GCG . A C GGT T GA A T A A A T G A ATA TA C A T T A T G G . T T GTT A T T T T AG T AC A TGA GGGT AA T C AGA A ATGC AT TGTTT G AAAC T AGA A T A G A C A AA T CATGAA A ATAT . A TGTACA T A A T AAA T T T TT T T A GA T G A A A AA C TCTAC CCC A G A C T A G T A A A T NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN A A A T T G A T C T CAGTTT A A A TT A AT TA AG GAG AG CT TGA GC T CTT TT C GAC GA GGAAGGGAA A GAATCCA T T G A CCTGGTACCTT T CGCATCAACATCATGTTTATTG AA A A AT . . G A A ACATCTTTCA N GGT NNN A . TTGAAATCCGACGTT GTCAGATTTCGACG A A C ACGATAT TA TGG ATCCAATGT T TT TC T
blockSeqs : . . . . T A . T A . A . . . AT T . . . . . T . G . . . GTT . . T A . . T . . TG GGT AA . . AGA . ATGA AA TGTTT C AAAC T AAA A T A G A C A AA G . A ATAT . A . T A A . AAA . T T TT . T . GA T G A A A AA T A C A . . C T . . . A T T . NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN . A . T T . C C C T TATTTT A . A . . AT . A . . AT . G T TG T C GT A G . AT T G . A T T GC . . . A . . A A . CG A . TC N . NNNNNNN N N A . ACGATAT . TGA ATCCAATGT T
blockSeqs : . . . . . . . . T . C . . . A T . . . . . . . G . . . A . . A . . . A . . T GA . . . . . T CT GTT A CAA G AAA T T T G . . . . T . . GTAT . A . T A A . TA . T T . . T . . T G A . A AG T A C . . . A A . . . A A A . NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN . A . T T . C C T A T A . T . . T . . . . C . . . T G . A . . A . . . . G GG . . . A . . . G . A . . TT T . TCAGATT C T A . . . TGA TCAACGTTG
blockSeqs : T . . . . . . . . . . . . . . . . . . . A . . . A . . . . . . . . T CT GTT A C G A . . T . . . . . T . . ATA . A . T A A . AA . C . . . T . . . G A . T AG . A C . . . A T . . . A . T . . . . A T . . . . . . . . . . . A . . . . T . A . . . . . TT T . TCA C T T . . . TGT TG
blockSeqs : A A . . . . . . . . G . . . . . . . . A . A . C . . . . . . . . . . T . . A . . . . A T . . . A . . . . . . TT A . TCA G A T . . . C A
blockSeqs : . . . . . . . . . A . T . . . . . . . . . . A . . . . . . . . . . . . . A . . . .
blockSeqs : . . . .
blockSeqCons : ** G** GG** ** T*** AAC* ******** G********************** A** TT** ATCCAATGT**
originalCons : NNNNACATGTACGCGTAGCATTATTA------TATCAGAACAAAT-TTCAGTG-AATGACTGCAAATTGT---CAAGTGTCAGA-ATGGAAAGAA-TAGAAAATTGGATGACTTTTCGAAGTACTCGTAAATTAGTATTGTTTTAAATTT-ATTCCATTA-TTTATTAAAGATGGGG-ATTATCTTATCCTTATGAAATATTTTTACAA-TGTGGAAGAATGAAAATATTTCAT----ATAATATATCAA-T-AAGAT-AAATTA-CAAAA-T-G-AGACAGACTGTGTAAAGACATTTTTTA-GTGGTGGTGATGGTTG--TG-GTTGTAAC-TGTAAGTTACATGTCTCCA-TA-TTTTTTTAAATTTTG-TTTTCCATACA--GACGTTTATAA--AATGC-CATGATGGGGTG-GGGAGGGA-GGTGGGGGTAACATGTC-TTCTTAACTTTCATATTTAATTTTGTTTT-CCATCCAGACAGACGTCTA-TCATATGCCATGTTGGTGAAAATGAAGTGTTTTTGGGGAAANAACAGGGAAAAGCNGCTAAAGGTAAACA-A-TTATATACACTGTAATAAAATAATAAAAGGATAG-ATAT-AACATTTT-ATTT--AAAATGAAATTGCTAATGANATA------TT-ATGAAAAATATCCAGA--------AATATTAGAATCATGATCTACA------ATAAATTCTCAAATTAAACTTAA-TTTT-AATT-GCGATTATGATTTT--TTATTGA-TTTTAGAATGTGT-ACTTCCTAGCAG--TCCTATGGCAACTGAAAGCAGCAT-AGATTTANTTCAACATTGTG---A-AATA--CCTGAAATATATCCCTG-AAAGAACTGGAGGAGGAGGTGGCTGAAGGCTTTGTGTTT-G-AAAAAAAAATNTGTTGT-A-ACCGTTGACAATCC-TTGGAAAAAATATTCTAATATACTAGTAATCAATCTTGACAGGAGAAAATTATCTGTTAGGG-TAAATGAATGTTGTGGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTNNNNNNNNNNNNNNNNNNNATCTTTAAATTGACATTAAATTGAACCCATGAG-AAAAAGCTAATG-AACTAATTTTACCTT-CATGTACATTTTTAAATGNACTGAACTACGTATCACTTTTGTTATATTTTGCTATG-CAAAA--TTAT-ACAGTTTCATCATTCAT--TTTATTGTCA-AT---TA--TTTAATCTTTTTTAT---GAAATAG-ACTAATTATTGTTAAGGGG--T-AGAGA-NATTCAAA-ACATTTG-GAATGAAGGAAGTTA-----GGAAATTAGCAGT-TGT------A-TTTAATGTTCAAT-TAATATACTCAATAC----------TTTTTTCAATCTTATTTCAGAGT---------------------G-ACGT--TG-AATCAA-CGTC-A-GATTTCGACGT-CGGT--TCAATTAACAAAATACAAA-------CGACGTNCGTT---TCAACG-TTCGAAATCCGACG-TTGTTTCGACG------TCAGA--TTTCGAC-------------GTCGGTTCAATTAACAAAATCAAACATCTTTCAACGTCATTTCAACGTC-GAAATGCG-------ACGTTGTTTCA--ACGTTGAA--TCAACG-TGATGTGCCTGCTGGGTTAGTGNNCGTTCTNGNTAAGTCC
finalCons : NNNNACATGTACGCGTAGCATTATTA------TATCAGAACAAAT-TTCAGTG-AATGACTGCAAATTGT---CAAGTGTCAGA-ATGGAAAGAA-TAGAAAATTGGATGACTTTTCGAAGTACTCGTAAATTAGTATTGTTTTAAATTT-ATTCCATTA-TTTATTAAAGATGGGG-ATTATCTTATCCTTATGAAATATTTTTACAA-TGTGGAAGAATGAAAATATTTCAT----ATAATATATCAA-T-AAGAT-AAATTA-CAAAA-T-G-AGACAGACTGTGTAAAGACATTTTTTA-GTGGTGGTGATGGTTG--TG-GTTGTAAC-TGTAAG--ACATGTCTCCA-TA-TTTTTTTAAATTTTG-TTTTCCATACA--GACGTTTATAA--AATGC-CATGATGGGGTG-GGGAGGGAGG--GGGGGT--CATGTC-TTCTTAACTTTCATATTTAATTTTGTTTT-CCATCCAGACAGACGTCTA-TCATT---CATGTTGGTGAAAATGAAGTGTTTTTGGGGAAAAAC-AGGGAAAAGCNGCTAAAGGTAAACA-A-TTATATACACTGTAATAAAATAATAAAAGGATAG-ATAT-AACATTTT-ATTT--AAAATGAAATTGCTAATGANATA------TT-ATGAAAAATATCCAGA--------AATATTAGAATCATGATCTACA------ATAAATTCTCAAATTAAACTTAA-TTTT-AATT-GCGATTATGATTTT--TTATTGA-TTTTAGAATGTGT-ACTTCCTAGCAG--TCCTATGGCAACTGAAAGCAGCAT-AGATTTANTTCAACATTGTG---A-AATA--CCTGAAATATATCCCTG-AAAGAACTGGAGGAGGAGGTGGCTGAAGGCTTTGTGTTT-G-AAAAAAAAATNTGTTGT-A-ACCGTTGACAATCC-TTGGAAAAAATATTCTAATATACTAGTAATCAATCTTGACAGGAGAAAATTATCTGTTAGGG-TAAATGAATGTTGTGGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTNNNNNNNNNNNNNNNNNNNATCTTTAAATTGACATTAAATTGAACCCATGAG-AAAAAGCTAATG-AACTAATTTTACCTT-CATGTACATTTTTAAATGNACTGAACTACGTATCACTTTTGTTATATTTTGCTATG-CAAAA--TTAT-ACAGTTTCATCATTCAT--TTTATTGTCA-AT---TA--TTTAATCTTTTTTAT---GAAATAG-ACTAATTATTGTTAAGGGG--T-AGAGA-NATTCAAA-ACATTTG-GAATGAAGGAAGTTA-----GGAAATTAGCAGT-TGT------A-TTTAATGTTCAAT-TAATATACTCAATAC----------TTTTTTCAATCTTATTTCAGAGTG----------------------ACGT--TG-AATCAA-CGTCA--GATTTCGACGT-CGGT--TCAATTAACAAAATACAAA-------CGACGTNCGTT---TCAACGTT--GAAATCCGACG-TTGTTTCGACG------TCAGA--TTTCGAC-------------GTCGGTTCAATTAACAAAATCAAACATCTTTCAACGTCATTTCAACGTC-GAAATGCG-------ACGTTGTTTCA--ACGTTGAAATCCAATGT--ATGTGCCTGCTGGGTTAGTGNNCGTTCTNGNTAAGTCC
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|15 ): GGAATTCTTTTAGAGAGAGTAACTATCTTCAACTCAACATACATGTATATATTTAATT
Unaligned ( gi|16 ): CTGGGAAATAAGCTTACGATCGACTCGAGCTGTCATGGGTATGTATAT
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 222 222222 1 1 111 11 1 3333333333 1 1 222 11 333 1 11 11 1111 22 3333 111 3333333333333333 111111111 1 2222 1 1 1 1 11 111111 1 22222222 111111 111 1 11 11 1 1 1 11111 111 1 4444444444444444444444444444444444444444444444444444444444444444444444 111111 11 11 22 111 11 111 11 1111 11 111 22 444444444 1 22222222 1 66666666666 77777777777777777777777 11 111 1 11 1 33333333 1 111 222222222222222 33333333333333 3333333 44444444444444 11 11
lowQualScore : 000 888888 0 0 777 3 11 0 3 1 8 5 8 0 8 0 0 3 8 8888888888 0 8 8 8 6 8 0 0 444 0 11 8 0 8 555 8 8 1 0 8 11 1 11 8 5555 0 8 22 2222 8 0 8 666 8 2222222222222222 0 888888888 6 1 0 1 5555 1 7 3 6 3 3 3 88 1 999999 1 7777 00000000 5 666666 5 5 1 5 888 5 1 4 55 5 5 5 55 2 4 5 1 1 33 0 00000 222 1 5 5 6 1 5 5 0 5 5 0 1 1 8 0000000000000000000000000000000000000000000000000000000000000000000000 0 6 3 6 7 3 6 8 1 1 1 0 666666 1 8 1 11 8 11 11 88 444 11 55 777 22 3 4444 11 2 111 99 222222222 0 99999999 3 9 0 0 3 55555555555 5 0 77777777777777777777777 11 8 8 666 0 0 33 7 7 5 55555555 0 0 0 0 444 99 1 6 000000000000000 66666666666666 0 1 3 5 2222222 66 55555555555555 44 22 66 1
lowQualScore : ... ...... . . ... . .. . . . . . . . . . . . . .......... . . . . . . . . ... . .. . . . ... . . . . . .. . .. . .... . . .. .... . . . ... . ................ . ......... . . . . .... . . . . . . . .. . ...... . .... ........ . ...... . . . . ... . . . .. . . . .. . . . . . .. . ..... ... . . . . . . . . . . . . . . ...................................................................... . . . . . . . . . . . . ...... . . . .. . .. .. .. ... .. .. ... .. . .... .. . ... .. ......... . ........ . . . . . ........... . . ....................... .. . . ... . . .. . . . ........ . . . . ... .. . . ............... .............. . . . . ....... .. .............. .. .. .. .
lowQualScore : 000 888888 0 0 555 2 22 0 2 4 0 6 0 6 0 8 8 2 0 1111111111 0 0 0 0 0 0 8 8 222 8 00 0 8 0 222 0 0 4 6 0 00 4 00 0 8888 8 0 00 8888 0 8 0 111 0 6666666666666666 8 888888888 4 0 0 0 0000 7 3 7 7 3 3 3 33 0 222222 4 7777 77777777 0 444444 0 0 4 7 111 7 4 1 77 7 0 7 77 0 3 0 4 0 66 6 11111 111 4 7 7 6 7 7 7 7 7 0 8 0 4 0 0000000000000000000000000000000000000000000000000000000000000000000000 8 7 2 7 5 2 7 8 4 4 0 6 666666 0 0 0 00 0 66 00 44 000 00 88 555 55 2 8888 00 5 222 00 222222222 0 88888888 2 2 0 8 2 77777777777 6 8 22222222222222222222222 00 0 0 888 8 0 88 0 0 5 88888888 8 8 8 4 000 22 3 7 000000000000000 88888888888888 2 3 6 0 5555555 99 55555555555555 77 00 55 0
consensus : NNNNACATGTACGCGTAGCATTATTA------TATCAGAACAAAT-TTCAGTG-AATGACTGCAAATTGT---CAAGTGTCAGA-ATGGAAAGAA-TAGAAAATTGGATGACTTTTCGAAGTACTCGTAAATTAGTATTGTTTTAAATTTA-TTCCATTATTT-ATTAAAGATGGGG-ATTATCTTATCCTTATGAAATATTTTTACAA-TGTGGAAGAATGAAAATATTTCAT----ATA--ATATCAA-TAAGA-T-AAATTA-CAAAATTGA-GACAGACTGTGTAAAGACATTTTTTA-GTGGTGGTGATGGTTG--TG-GTTGTAACT-GTAAGTTACATGTCTCCA-TA-TTTTTTTAAATTTTG-TTTTCCATACA--GACGTTTATAAA--ATGCCA-TGATGGGGTGGGGAGGGAGG-GTGGGGGTAACATGTC-TTCTTAACTTTCATATTTAATTTTGTTTT-CCATCCAGACAGACGTCTA-TCA--T---CCATG-----TTGGTGAAAATGAAGTGTTTTTAGGGGAAAAACAGGGAAAAGCNGCTAAAGGTAAACA-A-TTATATACACTGTAATAAAATAATAAAAGGATAG-ATAT-AACATTTT-ATTT--AAAATGAAATTGCTAATGANATA------TT-ATGAAAAATATCCAGA--------AATATTAGAATCATGATCTACA------ATAAATTCTCAAATTAAACTTAA-TTTT-AATT-GCGATTATGATTTT--TTATTGA-TTTTAGAATGTGT-ACTTCCTAGCAG--TCCTATGGCAACTGAAAGCAGCAT-AGATTTANTTCAACATTGTG---A-AATA--CCTGAAATATATCCCTG-AAAGAACTGGAGGAGGAGGTGGCTGAAGGCTTTGTGTTT-G-AAAAAAAAATNTGTTGT-A-ACCGTTGACAATCC-TTGGAAAAAATATTCTAATATACTAGTAATCAATCTTGACAGGAGAAAATTATCTGTTAGGG-TAAATGAATGTTGTGGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTNNNNNNNNNNNNNNNNNNNATCTTTAAATTGACATTAAATTGAACCCATGAG-AAAAAGCTAATG-AACTAATTTTACCTT-CATGTACATTTTTAAATGNACTGAACTACGTATCACTTTTGTTATATTTTGCTATG-CAAAA--TTAT-ACAGTTTCATCATTCAT--TTTATTGTCA-AT---TA--TTTAATCTTTTTTAT---GAAATAG-ACTAATTATTGTTAAGGGG--T-AGAGA-NATTCAAA-ACATTTG-GAATGAAGGAAGTTA-----GGAAATTAGCAGT-TGT------A-TTTAATGTTCAAT-TAATATACTCAATAC----------TTTTTTCAATCTTATTTCAGAGT---------------------G-ACGT--TG-AATCAA-CGTC-A-GATTTCGACGT-CGGT--TCAATTAACAAAATACAAA-------CGACGTNCGTT---TCAACGTT--GAAATCCGACG-TTGTTTCGACG------TCAGA--TTTCGAC-------------GTCGGTTCAATTAACAAAATCAAACATCTTTCAACGTCATTTCAACGTC-GAAATGCG-------ACGTTGTTTCA--ACGTTGAAA-CCAATGT--ATGTGCCTGCTGGGTTAGTGNNCGTTCTNGNTAAGTCC
Reference ( family-895 ) : NNNNACATGTACGCGTAGCATTATTA------TATCAGAACAAAT-TTCAGTG-AATGACTGCAAATTGT---CAAGTGTCAGA-ATGGAAAGAA-TAGAAAATTGGATGACTTTTCGAAGTACTCGTAAATTAGTATTGTTTTAAATTTA-TTCCATTATTT-ATTAAAGATGGGG-ATTATCTTATCCTTATGAAATATTTTTACAA-TGTGGAAGAATGAAAATATTTCAT----ATAATATATCAA-TAAGA-T-AAATTA-CAAAAT-GA-GACAGACTGTGTAAAGACATTTTTTA-GTGGTGGTGATGGTTG--TG-GTTGTAACT-GTAAG--ACATGTCTCCA-TA-TTTTTTTAAATTTTG-TTTTCCATACA--GACGTTTATAAA--ATGCCA-TGATGGGGTGGGGAGGGAGG-G--GGGGT--CATGTC-TTCTTAACTTTCATATTTAATTTTGTTTT-CCATCCAGACAGACGTCTA-TCA--T---TCATG-----TTGGTGAAAATGAAGTGTTTTT-GGGGAAAAACAGGGAAAAGCNGCTAAAGGTAAACA-A-TTATATACACTGTAATAAAATAATAAAAGGATAG-ATAT-AACATTTT-ATTT--AAAATGAAATTGCTAATGANATA------TT-ATGAAAAATATCCAGA--------AATATTAGAATCATGATCTACA------ATAAATTCTCAAATTAAACTTAA-TTTT-AATT-GCGATTATGATTTT--TTATTGA-TTTTAGAATGTGT-ACTTCCTAGCAG--TCCTATGGCAACTGAAAGCAGCAT-AGATTTANTTCAACATTGTG---A-AATA--CCTGAAATATATCCCTG-AAAGAACTGGAGGAGGAGGTGGCTGAAGGCTTTGTGTTT-G-AAAAAAAAATNTGTTGT-A-ACCGTTGACAATCC-TTGGAAAAAATATTCTAATATACTAGTAATCAATCTTGACAGGAGAAAATTATCTGTTAGGG-TAAATGAATGTTGTGGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTNNNNNNNNNNNNNNNNNNNATCTTTAAATTGACATTAAATTGAACCCATGAG-AAAAAGCTAATG-AACTAATTTTACCTT-CATGTACATTTTTAAATGNACTGAACTACGTATCACTTTTGTTATATTTTGCTATG-CAAAA--TTAT-ACAGTTTCATCATTCAT--TTTATTGTCA-AT---TA--TTTAATCTTTTTTAT---GAAATAG-ACTAATTATTGTTAAGGGG--T-AGAGA-NATTCAAA-ACATTTG-GAATGAAGGAAGTTA-----GGAAATTAGCAGT-TGT------A-TTTAATGTTCAAT-TAATATACTCAATAC----------TTTTTTCAATCTTATTTCAGAGT---------------------G-ACGT--TG-AATCAA-CGTC-A-GATTTCGACGT-CGGT--TCAATTAACAAAATACAAA-------CGACGTNCGTT---TCAACGTT--GAAATCCGACG-TTGTTTCGACG------TCAGA--TTTCGAC-------------GTCGGTTCAATTAACAAAATCAAACATCTTTCAACGTCATTTCAACGTC-GAAATGCG-------ACGTTGTTTCA--ACGTTGAAATCCAATGT--ATGTGCCTGCTGGGTTAGTGNNCGTTCTNGNTAAGTCC
gi|1 : ACATGTAC---TAGCATTATTACATGTATATCAGGACAAAT-TGCAGTG-AATAACTGCAAATTGT---CAAGTGTCAGA-ATGGAAAGAA-TAGAGAAGTGGATGACTTTTCGAAGTACTCATAAATTAGTATTGTTTTAAATTTA-TTCCATTATTC-ATTAAAGATTGGG-ATTATTTTATCCTTATGAAATACTTTTATAA-TGTGGAAGAATGAAAATATTTCATTTTAATAATATATCAAATAAGA-T-AAATCA-CAAAAT-GG-GAC---CTGTGTAAAGACATTTCT-----AGTGGTGATAGTTACATG-GATGTAACT-GTAA---ACATGTCTGCA-TA-TTTTTTTAAATTTTG-TTTTCCATACA--GACGTTTATAAA--ATGCCA-TGATGGGGTGGGGAGGGAGGTG--GGGGTAACATGTC-TTCTTAACTTTCATATTTAATTTTGTTTT-CCATCCAGAC----GTCTA-TCAAATG--CCAAG-----TTCGTGAAAATGAAGTGTT----GGGGAAATA-AGGGAAAAGCTGCTAAAGGTAAACATA-TTATATACACTGTAATAAAATAATAAAAGG-TAG-ATAT-CACATTTT-ATTT--AAAATGAAATTGCTAATGAGATA------TT-ATGGAAAATATCCAGATTTGCAGAAATATTAGAATCATGATCTACA------ATAACTTCTCAAATTAAACCTCA-TTTT-A-TT-GTGGTTATGGCATT--TTATTGA-TTTTAGAATGTGT-ACTTCCTAGCAG--TCCTATGGTAACTGAAAGCAGCAT-AGATTTATTTCAACATTGTG---A-AATA--CCTGAAATATATCCCTG-AAAGAACTGGAGGAGGAGGTGGCTGAAGGTTTTGTGTTT-G-AAAAAAAAATCTGTTGT-A-ACCGTTGACAATCC-TTGG-AAAGATATTTCAATATACTAGCAATCAATCTTGACAGGAGAAAATTATATGTTAGGG-TAAATGAATGTTGTGGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTT-------------------ATCTTTAAATTGACATTAAATTGAACCCATGAG-AAAAAGCTAATA-AAC------CATCTC-CATGTACATTTTTAAATGAATTGAACTATGTATCACTTTTGTTATATTTTGCTTTG-CAAAA--TTAT-ACAGTTTCATCATTCGT--TTTATTGTC--AT---TA--TTTAATCTTTTTTAT---GAAATAG-ACTAATTATTATTAAGGGG--T-AAAGA-AATTCAAA-ACATTT--GAATGAAGGAAGTTA-----GG--ATTAGCAAT-TGT------A-TTTAATGTTCAAT-TCATATACTCAGTAC-----------TTTTTCAATCTTATTTTAGAAT---------------------G-ACGT--TG-AATCAA-CGTCAA-GATTTCGACGTATGGCTGTCAATT-ACAAAATACGAA-------CAACATCTCTT---TCAACGTTTCGAAATTCGACGCTTGTTTCAACG------TCAGA--TTTCGAC-------------GTC-GTTCAATTAACAAAATCAAACATCTTTCAACG-CATTTCAACGTC-GAAATGCG-------ACGTTGTTTCA--ACGTTGAA--TCAATGTG-ATGTGCCTGCTGGGTTAGTAGGCGTTC-AGATAAATCC
gi|10 : tacaA-T-AAATTAACAAACT-GA-GGCAGACTGTGT--AGACATTTTTTAGGTGGTGGTGATGGTTG--AA-GTTGTAACT-GTAA---ACATGTCTCCA-TATTTTTTTTTAATTTTGTTTTTCCATACA--GACGTTTATAAA--ATGCCA-TGATGGGGTGGGGGAGGAGG-G--GCAA---CATGTCTTTCTTAACTTTCATA-TTAATTTTGTTTTCCCATCCAGACatttgcct
gi|11 : GGGG-ATTATCTTGTCCTTATGAAATACTTTAAAAAATGTGAAAGAATGAAAATATTTCAT----ATA
gi|12 : AATATATTT-AACGTCTTTTCA-CGTCCGAAATGCG-------A-ATTGTTTTATAACGATGGAA----------ATGTGCCTGCTGGGT--GTGTTCGTTCTCGTTAAGTCCtcttgatagtccatcgggaaccgatgatgactttgtctatggactcagcgatgatgatgaatgtggct
gi|13 : -ATGGAAAGAA-TAGAAAATTGGATGACTTCTCTAAGTAATCATAAATTAGTATTGTCTTAAATTTA-TTCCATTATTT-ATTAAAGATGtgtatt
gi|14 : gggtgagACATGTACGCGTAGCATTATCA------TATCAGAACAAAT-TTCAGTC-AATGACTGAAAATTGT---CAAGTGTCAGA-
gi|17 : cctAACGTCATTTCAACGTC-GAAATGCG-------ACCTTGTTTCA--ACGT
gi|18 : GAG-AAAAAGTTAATG-AACTAATTTTACCTT-C
gi|2 : TAGCATTATTA------TATCAGAACAAAT-TTCAGTG-AATGACTGCAAATTGT---CAAGTGTCAGA--TGGAAAGAA-TAGAAAATTGGATGACTTTTCGAAGTACTCATAAATAAGTATTGTTTTAAATTTA-TTCCATTATTT-AATAAAGATGGGGGATTATCTTATCCTTATGAAATATTTTTACAA-TGTGGAAGAATGAAAATATTTCAT----ATA---TATCAA-TAAGA-TCAAATTA-CAAAATTGA-GGCAGACTGTGTAAAGACATTTTTTA-GTGGTGGTGATGGT-G--TGTGTTGTAACT-GTAAA--ACATGTCTCCAATA-TTTTTTAAAATTTTG-TTTTCCATACA--GACGTTTATAAA--ATGCCA-TGATGGGG----GAGGG--G-G--AGGGTAACATGTC-TTCTTAACTTTCATATTTAATTTTGTTTT-CCATCCAGAC----GTCTAATCA--TATGCCATG-----TTGGTGAAAATGAAGT---TTT-GGTGAAACA-AGGGAATAGCTGCTAAAGGTAAACAGA-TTATATACACTGTAATAAAATAATAAAAG-ATAG-ATAT-AACATTTT-ATTT--AAAATGAAATTGCTAATGATATA------TT-ATGAAAAATATCCAGA--------AATATTAGAATCATGATCTACA------ATAAATTCTCAAATGAAACTTAA-TTTT-A-TT-GTGATAATGATTTT--TCATTGA-TTTTAGAATGTGT-ACTTCCTAGCAG--TCCTATGGCAACTGAAAGCAGCAT-AAATTTAATTCAACACTGTG---A-AATA--CCTGACATATATCCCTG-AAAGAACTGGAGGAGGAGGTGGCTGAAGGCTTTGTGTTT-GAAAAAAAAAATCTGTTGT-A-ACCTTTGACAATCC-TTGG-AAAAATATTCTAACATACTAGTAATCAATCTTGACAGGAGAAAATTATCTCTTAGGG-TAAATGAATGTTGTGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATCTTTAAATTGACATTAAATTGAACCCATGAG-AAAAAGCTAATG-AACTAATTTTACCTT-CATGTACATTTTTAAAAG-------------ATCACTTTTGTTCCAGTTTGCTATG-CAAAA--TTAT-ACAGTTTCATC-TTCAT--TTTATTGTC--AT---TA--TTTAATCTTTTT
gi|3 : ataatactacGACGTCTA-TCA--T-----ATGACAACTTGGTGAAT-TGAAGT--TTTC-GGG---AAACAGGGAAGAGCTGCTAAAGGTAAACA-AATTATATACACTGTAATAAAATAATAAAAG-ATAG-ATAT-AATATTTT-ATTT--AAAATGAAATTGCTAAT-AGATA------TT-ATGAAAAATA-CCAGA--------AATATTAGAATCATGATCTACA------ATAAATTCCGAAATTAAACTTAATTTTT-TATT-GTGATTATGA-TTT--TTATTGATTTTTAGAATGTGTAACTTCCTAGCAG--TTC-ATGGCAACTGAAAGCAGCAT-AGATTTAATTC--------------------CCTGAAATATATCCCAG-AAAGAACTGGAGGAGGAGATGGCTGAAGGCTTTGTG-TT-G-AAAAAAAAATCTGTTGT-AGGCCGTTGACAATCC-TTGGAAAAAATATTCTAATATACTTGTAATCAATCTTGACTGGAGAAAATTATCTGTTAGGG-TAAATGAATGTCGTGG-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATCTTT-AATTGACATTAAATTGAACCCATAAGAAAAAAGCT-ATGAAACTAA-TTTACCTA-CATGTACATTTTAAAATGAATTGAACTACGTATCACTTTTGTTATATTTTGCTATG-CAAAA--TTATAACAGTTTCAATATTCAT--TTTATTGTC--GT---TA--TTTAATC-TTTTTAT---GAAATA--ACCAATTATTGTTAAGGGG--TGAGAGA-TATTCAAA-A-ACTT--AAATGAAGGAAGTTA-----G---ATTAGCAGT-TGT------ATTTTAATGTTCAAT-TGATATACTCAATAC----------TTTTTTCAACCTTA-TTCAGAGT---------------------GCACGT--TGAAATCAA-CGCC-A-GATTTCGACGT-CGGT--TCAGTTAACAAAAT-CAAACATCTTTCAACGT-CATT---TCAACGTC--GAAATACAACG-TTGATTCAACGTTGAAATCCGACGTTTCAACGTCAGATTTCGACGTCGGTTCAATTAACAAAATCAAACATCTTTCGACGTCATTTCAACGTC-GAAATGCG-------ACGTTGTTTCA--ACGTTG-------------ATGTGCCTGCTGGG-TAGT
gi|4 : T-ATGAAAAATATCCAGA--------AATATTAGAATCATAATCTACATGTACAATAAATTCTCAAATTAAACTCAA-TTTT-A-TT-GTGATTATGATTTTTTTTATTGA-TTATAGAATGTAT-ACTTCCTAGCAG--TCCTATGGCAGCTGAAAGCAGCAT-AGATTTAATTCAACATTGTG---A-AATA--CCTGAAATATATCCCTG-AAAGAACTGGAGGAGGAGGTGGCTGAAGGCTTTGTGTTT-G-AAAAAAATAT-TGATGT-A-ACCGTTGACAATCC-TTGGAAAAAATAGTCTAATATACTAGTAATCAATCTTGACAGGAGAAAATCATCTGTTAGGG-TAAATGAATGTTGTGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATCTTTAAATTGACATTATATTGAACCCATGAG-AA---------------AATTTTACCTT-CATGTACATTTTCAAATGCACTGAACTACATATCACTGTT-TTA------GTCATGACTAAATTTTAT-ACAGTTTCATCA-TCATTATTTATTGTCA-AT---TAAGTTTAAT-TTTTGTATTGAGAAATAGCACTAATTATTGTTAAGGGGCTT-AAAGA-GATTCAAAGACATTTGAGAATGAAGGAATGTAGGAAGGGAAATTAGCAAG-TGTGAATCCA-TTTAA-----AAA-TAAT-TACTCAcaattgaaaataaacttgccacgaactctgaccatctaagtatattt
gi|4 : TCCTATT-CAGAGT---------------------GGACGTAAGG-AGGCAA-CGTC-ATGATT-CGATGT-CGGT--TCAATTAACAAAAT-CAAA-------NNNNNNNNNNN---NNNNNNNN--NNNNNNNNNNN-NNNNNNNNNNN------NNNNN--NNNNNNN-------------NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGA-TTCAACGTT-GAATTCCG-------ACGTTGTTTCG--ACGTgaatgacctagagaaccaagaaacggagtatacgtaataacgactcctattcagagtggacgtaaggaggcaacgtcatgattcgatgtcggttcaattaacaaaatcaaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncgattcaacgttgaattccgacgttgtttcgacgtcatcgacctcggttcaattaactaaatcaaacatctttcaacgtcatttcatcgtcgaaatacaacgatatacgttggttcaaagttgaaatccaatgttgtg
gi|4 : tatgaaaaatatccagaaatattagaatcataatctacatgtacaataaattctcaaattaaactcaattttattgtgattatgattttttttattgattatagaatgtatacttcctagcagtcctatggcagctgaaagcagcatagatttaattcaacattgtgaaatacctgaaatatatccctgaaagaactggaggaggaggtggctgaaggctttgtgtttgaaaaaaatattgatgtaaccgttgacaatccttggaaaaaatagtctaatatactagtaatcaatcttgacaggagaaaatcatctgttagggtaaatgaatgttgtggnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatctttaaattgacattatattgaacccatgagaaaattttaccttcatgtacattttcaaatgcactgaactacatatcactgttttagtcatgactaaattttatacagtttcatcatcattatttattgtcaattaagtttaatttttgtattgagaaatagcactaattattgttaaggggcttaaagagattcaaagacatttgagaatgaaggaatgtaggaagggaaattagcaagtgtgaatccatttaaaaataattactcagaatgacctagagaaccaagaaacggagtatacgtaataacgacCGAT---TCAACGTT--GAATTCCGACG-TTGTTTCGACG------TCA------TCGAC-------------CTCGGTTCAATTAACTAAATCAAACATCTTTCAACGTCATTTCATCGTC-GAAATACAACGATATACGTTGGTTCA--AAGTTGAAATCCAATGT---TGTGcatcgacctcggttcaattaactaaatcaaacatctttcaacgtcatttcatcgtcgaaatacaacgatatacgttggttcaaagttgaaatccaatgttgtg
gi|5 : tatgaaaaatatccagaaatattagaatcataatctacatgtacaataaattctcaaattaaactcaattttattgtgattatgattttttttattgattatagaatgtatacttcctagcagtcctatggcagctgaaagcagcatagatttaattcaacattgtgaaatacctgaaatatatccctgaaagaactggaggaggaggtggctgaaggctttgtgtttgaaaaaaatattgatgtaaccgttgacaatccttggaaaaaatagtctaatatactagtaatcaatcttgacaggagaaaatcatctgttagggtaaatgaatgttgtggnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatctttaaattgacattatattgaacccatgagaaaattttaccttcatgtacattttcaaatgcactgaactacatatcactgttttagtcatgactaaattttatacagtttcatcatcattatttattgtcaattaagtttaatttttgtattgagaaatagcactaattattgttaaggggcttaaagagattcaaagacatttgagaatgaaggaatgtaggaagggaaattagcaagtgtgaatccatttaaaaataattactcagaatgacctagagaaccaagaaacggagtatacgtaataacgactcctattcagagtggacgtaaggaggcaacgtcatgattcgatgtcggttcaattaacaaaatcaaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTTA------TATAAGAACAAAAATTCAGTGCAATGACTGCAAATTGTGGTCAAG-GTCAAAGATGGAAAGAAATAGAAAAT-GGATGACTTTTCGACGTACTCGTAAATTAGTATTGTTTCATATTCAATTCC-TTATTTTATGAAAGATGGAG-AT-ATCT-ATC-TTATGGAATATTTTTACAA-TGTGGAAGAATGAAAATATTTCAT----A----ATATCAT-TAAAAAT-AAATTA-CAAAAT-GAAGACAGACT-TGTAAAGACATTTTT-A-GTG-TGGTGATGGTTG--TG-GTTG-AGCTTGTAAGTTATATGTCTCCA-TA-TCTATTTAA-TTTTG-TTTTCCATACAAGGACGATTATAAACAATGCAAATGATGGGTTG---AGGGAGG-GTGGGGGT---ATGTC-TTCTTAACTTTAATATTTAATTTTGCTTT-CCATCCAGACAGACGTCTA-TCA--T---TCCTG-----TTGGTGAAAATGAA-TGTTTTTAGGGAAAAAACAGGGAAAAGCGGCTAAAGGTAAAC--A-TCATAAAT-CTGTAA-AAAATAATTAAAGGATAGAATGTCAACATTTTAATTTAAAAAATGAAATTGCTAATGATATA------TTAATGAAAA----------------------TAG--CCATGATCTACA------ATGAA-TCTC-AATTAAACTTAA-TTTTAAATT-GCGAGTATGA-TTT--TTATTGA-TTTTAGAA-ATAC-ACATCCTAGCAGGATCC-AT-GCAACTGAAAGC-GCATAAGATTTTTTCCAGCA-TGTG---A-AATA---TTGCAATATATCACTGAAAAGAACTGGAGTAGGTGGTGGCTGAAGGCTTTGTGTTTGG-AAAAAAAAATATG-TGTAA-ACCATTGAACATCC-TTTGAAAAACTATTC
gi|6 : GTACTCGTAAATTAGTATTGTTTCATATTCA-TTCCCTTATTT-ATGAAAGATGGAG-ATTATCTTATCTTTATGGAATATTTTTACAA-TGTGGAAGAATGAAAATATTTCAT----ATA---TATCAA-TTAAA-T-AAATTA-CAAAATTGA-GACAGACTGTGTAAAGACATTTTT-A-GTGGTGGTGATGGTTG--TG-GTTGTAGCT-GTAAGTTATATGTCTCCA-TA-TCTATTTAA-TTTTG-TTTTCCATACA--GACGATTATAAA--ATGCAA-TGATGGGGTTG--AGGGAGG-GTGGGGGT---ATGTC-TTCTTAACTTTAATATTTAATTTTGCTTT-CCATCCAGACAGACGTCTA-TCA--T---TCCTG-----TTGGTGAAAATGAA-TGTTTTTAGGGAAAAAACAGGGAAAAGCGGCTAAAGGTAAAC--A-TCATAAAT-CTGTAA-AAAATAATTAAAGGATAGAATGTCAACATTTTAATTTAAAAAATGAAATTGCTAATGATATA------TTAATGAAAA----------------------TAG--CCATGATCTACA------ATGAA-TCTC-AATTAAACTTAA-TTTTAAATT-GCGAGTATGA-TTT--TTATTGA-TTTTAGAA-ATAC-ACATCCTAGCAGGATCC-AT-GCAACTGAAAGC-GCATAAGATTTTTTCCAGCA-TGTG---A-AATA---TTGCAATATATCACTGAAAAGAACTGGAGTAGGTGGTGGCTGAAGGCTTTGTGTTT-G-GAAAAAAAATATGTTGT-A-ACCATTGAACATCC-TTGGAAAAACTATTCTAGTc
gi|7 : cAGGGAAAAGCAATTTTATGTAAGCA-AATTATATATTCTGTAATAAAA---------GATAC-ACAT-AAC-TTTT-ATTT--AGAATAAAATCGCTAATGAGATACATGAATT-ATGAAACGTATCCAGA--------AATATTTCAATCATAATTTACA------ATAAATTCTCAAGTTACATTT-----TT-AATTTGTGATTATGATTTTTTTTATTGA-TTTTAGAATGTGT-ACTTCCTAGTAG--TCTTATGGCAACTGAGAGCAGTAT-AGGTTTAATT----ATTGCGTCTACAATACCCCTGGAATATGTCCCTC-AAAGAGCT---GGAGGAGGTGGCCGAAGGCGTTGTGTTT-A-AAAACAAAATATGTTGT-A-ACCGTTGAAAATCCTTTGAAAAAAATGTTTTAATA------TAAT--ATCTTGACTAGAGAAAATTATTTATTAGAGTTAAATGAATAT
gi|8 : TTCAAACTGACAATAAATTAAATCCATGAG-AAAATTCTAATG-AACAAGTTTTACCTTGCATGTACATTTATAAATGCACTAAACTATGAATCACTGTTGTTAT---------------AA--TTAT-AAAGTTTCGTTATTCAT--TTTGTTATCAGATGAGTA--TTTAATATTTTTTAT---AAGATAG-ACTAATTATAG-TAAAGGT--T-AGCAATTATT-----GTATTTA-GAATCGAGGA
gi|8 : tAACTTTGCAGTATCT------A-T--AAGGTTCAATGTAACATATTTAATACCCTGGTACCTTTTTTTCAATCTTATTTCAGAGTCGCATCAACATCATGTTTATTG-ACGT--TG-AATCAA-CGTC-A-TATTTCAAtttcaacattatgttgaccatttttcagcatctactattaactttgcagtatctataaggttcaatgtaacatatttaataccctggtacctttttttcaatcttatttcagagtcgcatcaacatcatgtttattgacgttgaatcaacgtcatatttcaa
gi|9 : tttcaaactgacaataaattaaatccatgagaaaattctaatgaacaagttttaccttgcatgtacatttataaatgcactaaactatgaatcactgttgttataattataaagtttcgttattcattttgttatcagatgagtatttaatattttttataagatagactaattatagtaaaggttagcaattattgtatttagaatcgaggatttcaacattatgttgaccatttttcagcatctactattACGTT--GAATTCCGACG-TTGTTTCGACG------TCA------TCGAC-------------CTCGGTTCAATTAACTAAATCAAACATCTTTCAACGTCATTTCATCGTC-GAAATACAACGATATACGTTGGTTCA--AAGTTGAAATCCAATGT---TGTGTC
gi|9 : TCGACCTCGGTTCA-ATT---------------------A-AC----TA-AATCAAACATC-----TTTCAACGT-CATT--TCA-TCGTCGAAATACAA--------CGATATACGTTGGTTCAAAGTT--GAAATCCAATG-TTGTGTCAACG------TCAGA--TTTCGAC-------------GTCGGTTCAATTATCAAAATCAAATATCTTTCAACGTCATTTCAACGTC-GAAATGCG-------ACGTTGTTTTA--ACGTTGTA--TCAACGTTGATGTGCCTaacgtcagatttcgacgtcggttcaattatcaaaatcaaatatctttcaacgtcatttcaacgtcgaaatgcgacgttgttttaacgttgtatcaacgttgatgtgcct
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|15 ): GGAATTCTTTTAGAGAGAGTAACTATCTTCAACTCAACATACATGTATATATTTAATT
Unaligned ( gi|16 ): CTGGGAAATAAGCTTACGATCGACTCGAGCTGTCATGGGTATGTATAT