lowQualScore : 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 1111111111111111111111111111111111
lowQualScore : 22 1 1 111 111 111111111111 1 444444444444444444444444 111111111111 3333333333333333333333333333333333333333 1 1111 111 222 2222222 1111 1 11 4444444444444 22222222222 11 1111111111 2222222 333333333333333 333333333333333333333 666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 11111 1111 111 1111 444444444 7777777777777777777777777777777777777 2222222 1 1111111111111111111111111111111111 222222
lowQualScore : 666 77 4 5 3 5 666 44 222 111111111111 33 2 5 2 7 000000000000000000000000 4444 444444444444 33 6 88 7777 9999999999999999999999999999999999999999 0 5555 5 0000 3 000 2 99 111 7777777 0 7777 3 88 8 0 8888888888888 3 8 55555555555 4 33 4 4 3333333333 5 1 3 888888 0000000 55 3 22 0 6 1 3 3 7777 4 4 2 4 4 4 2 4 7 5 555555555555555 222222222222222222222 2 3 777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 6 99999 4 6 55 4444 0 888 4444 4 111111111 2 7777777777777777777777777777777777777 7777777 3 1111111111111111111111111111111111 2 555555
lowQualScore : ... .. . . . . ... .. ... ............ .. . . . . ........................ .... ............ .. . .. .... ........................................ . .... . .... . ... . .. ... ....... . .... . .. . . ............. . . ........... . .. . . .......... . . . ...... ....... .. . .. . . . . . .... . . . . . . . . . . ............... ..................... . . ...................................................................................................................................................... . ..... . . .. .... . ... .... . ......... . ..................................... ....... . .................................. . ......
lowQualScore : 555 55 0 0 2 0 555 22 777 333333333333 77 5 1 5 1 222222222222222222222222 8888 666666666666 99 2 99 1111 1111111111111111111111111111111111111111 0 4444 0 6666 9 222 8 44 666 0000000 8 0000 6 00 0 8 2222222222222 5 2 55555555555 4 22 0 4 8888888888 5 2 6 222222 5555555 00 3 77 4 7 8 3 3 1111 0 5 2 4 4 4 0 4 2 0 666666666666666 666666666666666666666 5 2 444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 7 22222 8 0 22 2222 7 222 2222 0 333333333 5 2222222222222222222222222222222222222 0000000 3 0000000000000000000000000000000000 5 777777
consensus : NTGCANCNCAAGTTAANTTATGTCTCCCCTCTTCCA---GG--GG-AAGACAT--TG-------TTT--T-TGTACT-TTCTGTC--------CGTC----C-G--TC-T--G-TCTGTC------------ACAA--AATCT-TGT-GAACG----CTTCTCCT--T-TATG----CGGCTT--ATC-GGAT-AGA-C-T-GAAACTTT-GTACA-ATG-CTT----CATTGCC-ATTTGTAGAA-GTG--CATATTGTCGGGACAGGAGG----ATCCAATTA-TT-TTCCTTAAAG--TNANGGTGGATCTAAGAGGGGTGGGG--GG-TGT-AAA-ATAGCTT-GTG-AACA----C---TTCTCCT-ATA--T---GA------CTTA--TCGG-ATAGACTTGAAACTTT-GTACA-AT-GCTT----CATTG-CCATTTGTAG-ATGT-GCA-CATTG-TCAGGA-CAGGGG----GATCCAA----TTATTTT--CCTTAAG-TT----ATGGTGGATCTAAGAGG--------GTGTAGAA-----NA-GCT---AAAAACCTT-TGGAACACTT-T-CTATN-TGGCTTATCGAATAGACTTGAAAC-T-TT-GTA-CAATG-------------C----TT-----------G----CA------------G-ATGTG-CAT-ATTGTCAGGACAGGAGGATCCAA----TTATTTT-CC----TNAAAGTTATAGANGATCTAAGAGG-------GGTGGA--GGA-------------T-----GTAAACACTTC--CTA-TATGGCTTATCAAGGAATAGACTTGNAACTTTGCATA-CAGTGCTNTTTCGC--GTCGCATGCAGCGGTGACAT
Reference ( gi|1 ) : TTGCATTTCAAAT--ATTTATTTCTCGCCTCTTCCA---GG--GG-AAGACAT--TG-------TTT--T-TGTGCT-TACTGTC--------CATC----C-G--TT-T--G-TCTGTC------------ACAA--AATCT-TGT-AAACG----CTTCTCCT--TGTATA----CAGCTT--ATC-GGAT-AGA-A-T-GTAACTTT-GTGCA-ATG-CTT----CATTGTC-AGTTGCAGAA-GTG--AATATTTCCTGGCCAGGAGG----ATACAATTC-TT-TTCCTTACAG--TAAAGATGGATCTAAGAGGGATGGAA--GG-TGTAAAA-ATAGCTT-GTG-AACA----C---TTCCCCT-ATA--T---GA------CTTA--TCAG-ATAGACTTGAAACTTT-GTACA-AT-GCTT----CATTG-CTATTTGTAG-ATGT-GCA-TATTG-TCTGGA-CAGGAG----AAATCAC----TTATTTT--CTATACA-TT----ATGATGGATCTAAGAGG--------ATGTAAAA-----AA-------AAAAACCTT-TAAAACATTTATCCTATT-TGGCCTATCAGATAGACTTGAAAC-T-T--GTT-CAATG-------------C----TT-----------G----CA------------G-ATGTG-CAT-ATTCTCGGGGCAGAAGGATCCAA----TTGTTAT-CC----TAAAAGTTTTAGAGGATCTAAGAGG-------TGTGGA--GGA-------------T-----GTAAACGTTTC--CTA-TATGGCTTAT---AGCCTAGCCTTGAAAGTTTGTGTACCAGTCCTGTTTTGT--GTTGCATGCAACAATGACAT
gi|19 : TGCAACTTAAATTAAATTATGTC---CCTCTTCCA---GG--GT---GACAT--T---------TT--T-TCTACT-T--CGTC---------GTC----C-A--TC-T--G-TCTGTC------------AC--------T-TGT-------------CCCCT-----ATA----CAGTTT--GTC-GGAT-AG
gi|8 : TTACAAGT--ATTTATGTCTCCCATCTTCCATTTAG--GA-ACGACAT--AG-------TTT--T-T---CTAGAAT-TC--------CGT-------G--TC-T--GTTCTGTT-------------CAACCAATCTCCGT-GACGG----TTTCTCCTCCTCTATGATCTCCACTT---TCAGGAT-AGC-T-T-GAAACTTTGGTACAGATG-CTT----CATT
gi|10 : TTATGTCTCCCCTCTTCCAT--GGGTGG-CAAACATA-CG--------TT--T-TGTACT-TTCTGTA--------TGTT----CAG--TTCT--A-CCTGTC------------AC-A--AATCT-TGTGAAACGGGGTCTCCTCC---TGTAT---------TTGAAT----AT-AGA-ATT-GAAAAATT-TTACA-GTG-CTTACAACATTGCC-A
gi|34 : TTATGTCTCTCCTCTTCCA---GG--GGTAGGATCT--CA-------GTT--A-TGTGCT-TTCTGCC--------TGTC----C-------T--G-TCTGTC------------ACTA--TATCT-TAC-GAACG----
gi|30 : CCTCTTCCA---AT--GG-AA-ACAA--TG-------TTT--G-TGTACT-TTCTGTCAGTCAGTTCGTT----C-G--TC-T--G-TCTGGC------------TCAA--GACCT-TGT-AAAAG----CTTCTCC
gi|46 : cCCCCTTCCACA-GG--AG-AAGACAT--TC-------ATT--T-TGTACT-TGCTGGT--------CATC------------T--G-TCTGTC------------ACAA--A
gi|3 : tatgtCTCTTCCA---GG--GC-A-GACATATTG-------TTTAATATGTACT-TTCTGTC--------TATC----C-A--T--------CTGAC------------ACAA--AG-CT-GGT-GAAGA----CTTTT--T--TTTATA----CGGCTT--ATC-AGAG-AG---------ACT----------TG-CTT----CATTGCC-ATTTGTAGAT-GTG--CATATTGTTAGAACAGGAGGATTCATGCAGTTA-TT-TTCCTCA-AG--TTATGGTGGATCTAAGAGGGGTGGGA--GA-TAT-TAT-ATAGTTT-GTG-AATA----T---AT---CT-ATT--T---GG------GTTA--TTGG-ATG-----GAAACTAT-GTATA-AT-GCTG----CATTG-CTAT---CAC-ATGT-ACA-T-TTG-TCAGGA-CAGAGG----GTTCCAA----TTATTTT--CCTTAAA-------------GATCTAAGAGGGGTGGAGAATGTAAAA-----
gi|4 : atgatgctcaacacttgcctttCTGTTCTA---GA--GG-GGGACAT--TG-------TTT--T-TGTACC-TTCTGTA--------CATC----G-G--TC-T--G-TCTGTCCATCTGTCAGTCACAA--AATCT-CGT-GAACG----CGTCTCCTCCTTTATG----C--CTT--ATC-AGAT-AGACA-T-GAAACTTG-GTACA-ATA-CTT----CATTTCC-GTTTGTAGAT-ATG--CACATTGTCAGGACAGGAGA----ATCCAATTA-TT-TTCC-TAAAT--CGAAG---------AGAGGGATGGAG--GA-TGT-AAA-ATAGCTT-t
gi|41 : tataatgcatataagtattgtacaattatgtctccggaactCTCCTCCA---GG--G--ATTACAT--T---------TT--T-TGTACT-TCCTGTC------------------A--TT-T------TGTC------------ACAC--AATCT-TCT-GATCG----CTTCTCCa
gi|14 : TCCA---CG--GG---GATAT--TGACAAGAGTTT--T-TGTACT-TTCTGGC--------C------------------G-TCTGTC------------ACAA--AATCTGTG--AAAC-----CTTCTCC-----TAC-----CAGTTT---TC-AAAT-AGC-C-T-TGAAATTT-GTA-G-ATG-TGC----CATTAT
gi|28 : G--GG-GAGACAT--TG-------TTT--T-TGTACC-CTCTGTC--------CATC----A-G-----T--G-TCT
gi|57 : gtaatggattatatcgagtaccaatttccaacccttaatat--GG-GAGACAT--TG-------TTT--T-TGTACC-TCCTGTC--------CATC----T-G--TC-T--C-CCTGccccgtc
gi|56 : --GG-GAGACAT--TG-------TTT--T-TGTACC-TCCTGTC--------CATC----T-G--TC-T--C-CCTG
gi|44 : T--TG-------TTT--T-CATACT-TTCTGTC--------TGTC----A-GGCTT-TCAG-TCTGTT------------TCAA--AATCT-TGT-GAATG----CTCCTCC
gi|49 : -------TTT--C-TGTCCG-T-CTGTT--------CACCTAGCC-G--TC-T--G-TTTGTC------------ACAA--AATCT-CGT-GAAC
gi|51 : tac-TGTGCT-TCCTGTC------------------------T--G-TCTGTC------------ACAA--AATCT-TAC-CAACG----GTTCTCCT--CGTATA----CA
gi|2 : CTGTT------------A-AA--TATAT-TGT-GAACA----CTTCT--------ATA----TGACTT--ATC-AAAG-AGA-C-TTATAACTTT-GCACA-ATG-CTT----TATTGCC-AGTTGCAGAA-GTG--TATTTTGTCTGGACAGGAGG----ATCCAATCA-TT-TTCCTTAAAG--TTATGGTAGATCTAAGAGGGATAGAG--TG-TGT-AAA-ATAGCCT-GTG-AACA----C---TTCTACT-ACA--T---GG------CTTA--CTGA-ATAAATGCGAGACTTT-GTACA-AT-ACTT----TAATA-TCATTTAATG-ATGT-TCA-CATTA-T
gi|6 : atatacttaaaactttgtgcaatgtttcattgccatttattgaagtgcataatgctggaacaggaggattcaatcattttacttttaagttacagaggatctaagaggggtgggatgggTCTCCT--TATATG-----AGCTTTAATT-CAATTAAA-C-T-GAAACTTTTGTACA-ATGGCTT----ATTTGCCCATTTGTAGCATGTGGCATTATCGTCAGGACAGG-GG----ATCCAAATCATTGTTCCTAAAAG--T-----------TATGA----------------TAAAT-ATA---T-GTA-AA-----------TCCCTC-ATA--TTATGG------CTTA--TGGA-ATAAACTTGAAACTTT--TACA-GT-GCTT----CA-TG-CCA--TGCAG-CGGT-GC--CCTTG-TCAGGA-AGGGGG----Atctaaccaagga
gi|2 : tatatacaAACTTT-GTGCA-ATG-TTT----CATTGCC-ATTTATTGAA-GTG--CATAATGCTGGAACAGGAGG----ATTCAATCA-TT-TTACTTTTAAGTTACAGA-GGATCTAAGAGGGGTGGGATGGGCTGTTAAATATA--TT-GTG-AACA----C---TTC---T-ATA--T---GA------CTTA--TCAA-AGAGACTTATAACTTT-GCACA-AT-GCTT----TATTG-CCAGTTGCAG-AAGT-GTA-TTTTG-TCTGGA-CAGGAG----GATCCAA----TCATTTT--CCTTAAAGTT----ATGGTAGATCTAAGAGG--------G-ATAGAGTGTGTAA-------AATAGCCTG-T-GAACACTTCTACTACA-TGGCTTACTGAATAAATGCGAGACTT-T--GTA-CAATA-------------C----TT-----------
gi|5 : atatacttaaTGGATCTA-GAGGG-TGGGG--GG-TTTAAAA-ATAGCTTCATG-AACA----T---TTTCC---ACA--T---GA-------GTA--TCGG-ATGACCTTGA---TAT-GTA---------------ATTA-TCATTCAT-G-ATGT-CTA-CATTGTTCTGAC-CAGAGG----ATCTAA------TATTTT--CGATATA-AT----CTGAtaatatcatttaatgatgttcacattattctaaccaagga
gi|4 : acaggaggatcccaatcgtAAA-AT--CTC-GTG-AACG----CGTCTCCTCCT-TTA--T---GC------CTTA--TCAG-ATAGACATGAAACTTG-GTACA-AT-ACTT----CATTT-CCGTTTGTAG-ATAT-GCA-CATTG-TCAGGA-CAGGAG----AATCCAA----TTATTTT--CC-TAAA-TCGAAGA-GAGGGAT---GGAGG--------ATGTAAAA-----agagtgttttatcagttctttcatgtacaagggtatattcacttacctactggttcattcacatagcagttcttattcttgtatcatatcacaataat
gi|14 : tataatgcatataagtattgtacaattatgtctccggaactctgttctagagggggacattgtttttgtaccttctgtacatcggtctgtctgtccatctgtcagtcacAAA-AT---CT-GTG-AAAC----C---TTCTCCT-ACC-------A------GTTT--TCAA-ATAGCCTTGAAA-TTT-GTA-G-AT-GTGC----CATTtagctta
gi|10 : tccacggggatattgacaagagtttttgtactttctggccgtctgtcacAA-AT--CTT-GTGAAACGGGGTC---TCCTCCT-GTATTT---GA---------A--T----ATAGAATTGAAAAATT-TTACA-GT-GCTTACAACATTG-CCAat
gi|3 : ttatgtctcccctcttccatgggtggcaaacatacgttttgtactttctgtatgttcagttctacctgtcacAGCTG-GTG-AAGA----C---TTTTTTTTATA--C---GG------CTTA--TCAG-AGAGACTTG------------------CTT----CATTG-CCATTTGTAG-ATGT-GCA-TATTG-TTAGAA-CAGGAG----GATTCATGCAGTTATTTT--CCTCAAG-TT----ATGGTGGATCTAAGAGG--------G-GTGGGA-----GATATT---ATATAGTTTGTGA---ATATAT-CTATT-TGGGTTATTGGATG-----GAAAC-TAT--GTA-TAATG-------------CTGCATT-----------GCTATCA------------C-ATGTA-CAT--TTGTCAGGACAGAGGGTTCCAA----TTATTTT-CC----TTAAA---------GATCTAAGAGG-------GGTGGA--GAA-------------T-----GTAAA
gi|8 : atgatgctcaacacttgcctttctcttccagggcagacatattgtttaatatgtactttctgtctatccatctgacacaa----C---TCCTCCT-CTA--T---GATCTCCACTT---TCAGGATAG-CTTGAAACTTTGGTACAGAT-GCTT----CATTat
gi|6 : ttacaagtatttatgtctcccatcttccatttaggaacgacatagtttttctagaattccgtgtctgttctgttcaaccaatctccgtgacggtttCCTT-ATA--T---GAGC----TTTAATTCAA-TTAAACT-GAAACTTTTGTACA-ATGGCTT----ATTTGCCCATTTGTAGCATGTGGCATTATCG-TCAGGA-CAGGGGATCCAAATCA-----TTG-TTC--CTAAAAG-TT----ATGATAAATAT--------------ATGT-------------------AAATCCCT-CA------------TATTATGGCTTATGGAATAAACTTGAAAC-T-T--TTA-CAGTG-------------C----TT-----------
gi|2 : tatatacatct-ATATACTTAAAACTTT-GTGCA-AT-GTTT----CATTG-CCATTTATTG-AAGT-GCA-TAATG--CTGGAACAGGAG----GATTCAA----TCATTTTACTTTTAAG-TT----ACAGAGGATCTAAGAGG--------G-GTGGGA-----TGGGCTGTTAAATATATT-GTGAACACTT---CTATA-TGACTTATCAAAGAGACTTATAAC-T-TT-GCA-CAATG-------------C----TTTATTGCCAGTTG----CA------------G-AAGTG-TAT-TTTGTCTGGACAGGAGGATCCAA----TCATTTT-CC----TTAAAGTTATGGTAGATCTAAGAGGGATAGAGTGTGTA--AAA-------------TAGCCTGTGAACACTTCTACTA-CATGGCTTAcatgccatgcagcggtgcccttgtcaggaaggggga
gi|14 : AAAATCTG-TGAAACCTTC-TCCTACC--AGTTT-TCAAATAGCCTTGAAAT-T-T--GT--------------------------------------------A------------G-ATGTG-Cctgaataaatgcgagactttgtacaatactttaatatcatttaatgatgttcacattattctaaccaagga
gi|4 : tccacggggatattgacaagagtttttgtactttctggccgtctgtcacTCCTTTA-TGCCTTATCAGATAGACATGAAAC-T-T--GGTACAATA-------------C----TTCATTTCCGTTTG----TA------------G-ATATG-CAC-ATTGTCAGGACAGGAGAATCCAA----TTATTTT-CC----TAAA-----TCGAAG-----AGAGG-------GATGGA--GGA-------------T-----GTAAAcattat
gi|6 : tataatgcatataagtattgtacaattatgtctccggaactctgttctagagggggacattgtttttgtaccttctgtacatcggtctgtctgtccatctgtcagtcacaaaatctcgtgaacgcgtctccTCAATTAAACT-GAAAC-T-TTTGTA-CAATGGCTTATTTGCCCAT----TT-----------G----TA------------GCATGTGGCATTATCGTCAGGACAGG-GGATCCAAATCATTGTT---CC----TAAAAGTT----ATGAT-----AAA-------TAT-------A-------------T-----GTAAATCCCTC--ATATTATGGCTTAT---GGAATAAACTTGAAACTTT---TA-CAG---TGCTTCAT--GC--CATGCAGCGGTGatagctta
gi|2 : tatatacatctccttatatgagctttaatATATACTTAAAAC-T-TT-GTG-CAATG-------------T----TT----------------CATTGCCATTTATTG-AAGTG-CAT-AATGCTGGAACAGGAGGATTCAA----TCATTTTACT----TTTAAGTTACAGAGGATCTAAGAGG-------GGTGGGATGGGCTGTTAAATATATT-----GTGAACACTT---CTA-TATGACTTATCAAAG---AGACTTATAACTTTGCA---CAATGCTTTATTGCCAGTTGCAcccttgtcaggaaggggga
gi|50 : CAGGACAGGAGGGTCCAA----TTGTTAT-CCAAAAAAAAAGTTATAG-CGATCTAAGAGgaagtgtattttgtctggacaggaggatccaatcattttccttaaagttatggtagatctaagagggatagagtgtgtaaaatagcctgtgaacacttctactacatggcttactgaataaatgcgagactttgtacaatactttaatatcatttaatgatgttcacattattctaaccaagga
gi|48 : TTTTGT--ATCATATACAACAATGACAT
36 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|7 ): ATGATGTTGACATTGTTTTGACCAGAGATCGAATATTGTCCTACAATTTATACTAGACCAAAGAAGAGTGTTATAGCTTTTCTCATGTATAAGGGCAATGCCATATGTTCACTTTCTTACTGATACTTCAGCATAAGTCATTATTTTTGTATCATATGCAAATGA
Unaligned ( gi|9 ): TGTTCTGACTAGAGATCTAACATTTTCCTACAGTTTACAGTGGTCCCAAGAAGAGTTTTTTATAGCTTTTTTTATGTACAAGGATATGTTCACTTTCCCACTGGTACTTCAGCATAACAGTTTTTATTTTTGTATCATGCACAGCAGTGACA
Unaligned ( gi|11 ): GATATTCACATTATTTTAATTGCGGTTCTAATATTCTCGTAAAATTTACAATGGATCAAAAGGGAGTGCTGTACGCCTCTTTTCATGTATATGGGTAAGTTCAATTTATACTGCTACTTCAGCATAGCAGTTGTTTTTGTA
Unaligned ( gi|12 ): GATGATGTTGACATTGTTTTGACCAGAGATCTAATATTGTCCTACAATTTACATTAGATCAAAGAAGAGTGTTATAGCTTTTTTCATGTATAAGGTAATGTTCAATTTCTAACTGATACTTCAACATAACAGTCATTAT
Unaligned ( gi|13 ): TATGCACATTGTTCTCTAAAGGATATGAAAATTTCCCACAATTTACAGTGGAGTGTTTTAGAGCTATTTCGTGTGCAATATTGGGTATTTGAACAACATAACAATTCTTTTTTATATCATATACAACAATGAGA
Unaligned ( gi|15 ): AGAAAGTGTCATAGTGTTTTTTTTTTCATGTACAAGAATATTATTCATTCACGTACAAGATATATATGTTCACTTTCCTACTGGTACTTCAGCACAACAGTCATTGTATCATT
Unaligned ( gi|16 ): TAGTGTTTTATAGCTTTTTTTTTTAATGAAGAAAGGTAAGTTTACTTACCTAAGTGGTACTTCAGCATAACAGTCATTATTTTCGTATCATAAACAACGATGGCATT
Unaligned ( gi|17 ): TCAAACAAAAGTGTTTCATCGCTTCTTCATGTAATTAGTTATGTCCAATGTTTCTACTGACACTTCAATATAACAGTCATTATTTTTGTAACATGGCACCAACAT
Unaligned ( gi|18 ): GCTTTATAGCCTTTCTCATGTTGAAAAGTATATTCACTTTCCTACAGGTACAGGTACTTCAGCACACCAGTTGTTATTTTTGTATCATATACATGTAACAA
Unaligned ( gi|20 ): AATGTTTTATAAAATACTCTTTTTTTATGCACAAGGGTATGTTCACTTACTTACTGGTATATCTATATCATTTATTCTTATTAAATCCAACCATGACAT
Unaligned ( gi|21 ): TTATAGCTTTTTTTCATGTACAAGGGTATTTTCTTTTTTCTACTGGTACTTTAGCATAACAGTAACTGTATTTATTTTTTGTATCATATACAACGACA
Unaligned ( gi|22 ): TTATGGCACCGTTGGCATTAAAACTAGGGATATAACATTCCCCTACGAATTACAGTAGACCAACGAGTTGCCCTCTGTAGCTTTCTTCATGTGCAAGG
Unaligned ( gi|23 ): ACACAATTTCAGTGGATAAAGAGAAGAGTTTTCACATACAAGTGTATGCTCACTTTCCTACTAGTACTTCAGCATAACCGTCAGTATACAACAATA
Unaligned ( gi|24 ): ATGTTCATATTGTTTGAACTAAGGGTATACTATTTTCGTAAGAGTTAAAACGGACCAAGGAGGAGTGTTTAGTAGCTTTTTTTCGTGTGGAAAGG
Unaligned ( gi|25 ): TAGCTTTTTCCATGTACAAGGGTAAGTCCACTTTCCTACTGGTACTTAGCAATATTAACTGTCATTATTTTGTATCATACACATCAATGACATT
Unaligned ( gi|26 ): ATAGCTTTTGTTCCTGTATAAGGTTATATTCACTTTCCTACTGGTACTTTAGCATCATAGTCATTAGTTTGGTGTCATACACAACAATGACATT
Unaligned ( gi|27 ): ATGTTCACATTGTTCGAACTATAGTCAAGAGATATTTTTTCTACAATATACAGTGGACCAAAGTTTTTTGTAGCTTTTTTCATGCGCAAGG
Unaligned ( gi|29 ): TATAGTTTTTTCATGTATAAGGGTATGTTCACTTTCTTACTGATACTTCAGCATAACAGTCATTATTTTTGTATCATATGCAAATGA
Unaligned ( gi|31 ): CTTTTTCATGTATAAGGATATGCTCACTTTCCTATACTTCAGCATAACATTTACCGGTATCATTACTGTATCATATACAACAATAT
Unaligned ( gi|32 ): TGAACTACGGATATAATAGTTTCCTACAATTTACAATGGACCAAAGAGGAGTACGTGTTTTGTAGTTTTTCTCATGTGCAAGG
Unaligned ( gi|33 ): TAGCTTCTCATGCACAAGAATATGGTCACTTTCGTATTGGTACATCAGCATAATAACAGTCATTATTTTTGTATCATAATGC
Unaligned ( gi|35 ): GTAGCTCTTTATGTACAAATGTATGTTCATTTTCCCACTGGCCCTTAGCATAACAGTCATTGATATGTATCATACACGA
Unaligned ( gi|36 ): GTAGCTTTGTTCATGAACAAAGGCATGTTCACTTTCCAACTGGAACTTTAAGCATTTTGTATCATGTACAGCAATGTC
Unaligned ( gi|37 ): ATGTACAGGGGCATGTTCACTTTCCTACTGGTACATCATATTACTTCTGCACAATGGTCATCATTTTTGTATCATG
Unaligned ( gi|38 ): GTTATGTTCACTTTCTTGACTCATCTTCAGCATACAATCATTATTTTTGTATTATATGCAAAAACGAAAT
Unaligned ( gi|39 ): AGGTATGTTCACTTTCCCTATAAGTACATCAGTATTGTTCATTAGGTTTTGTATCGTATACAGCAATGT
Unaligned ( gi|40 ): TTTTTCATGTACAATTCAACGTTCACTTTCCTACTGGTACTTCAGCATAACAGTCATTATATATGCAT
Unaligned ( gi|42 ): GTTATACCTTTTCATGCATATAAAGGGTATGTTCACTTTCTTACTGATACTTCACTTCAGCATAA
Unaligned ( gi|43 ): ATAGTTTTGTTCATGCATCAGGGTATATTTAATTTCTTACTGTTACTTCAGCGTAAAAGTAATTT
Unaligned ( gi|45 ): CTTTTTTTTCATGTACGAGGGTATCTTCGTTTTCCTACTGGTACTTCAGCATAACAGTCATTA
Unaligned ( gi|47 ): ATGTACAGAGATATGTTCACTTTCCTACTTCAGCCTAACAGTCATTGACATTAGT
Unaligned ( gi|52 ): TTTGATGATGTTCACATTGTTCTAACCAAGGATCTAATATTTTCGTACAATTT
Unaligned ( gi|53 ): GTCATAGCTCTAATATTTTCCTACAATTTACATAATAGATCAAAGAAGAGTGT
Unaligned ( gi|54 ): ACAATGGACCAAGGAGGAGTGCTTTGTAGCTTCTTTCAAATGTGTAGGG
Unaligned ( gi|55 ): TACAATGGACCAAAGAGGAGTGTTTTGTAGCTATTTTCATATGCAAGG
Unaligned ( gi|58 ): ATATTTAGTATTATTGTATCACATACAATAATGG
Alignments
lowQualScore : 33 11111 111 111 11111111111 3333333333333333333333333333333333333333333333 1111 11 1111111 1 11 111111 111 1111 11 11 111 1111 2 33 11 2 555555 1 1 222222 11 1 11 9999999 1 1 11 4 1 11
lowQualScore : 1 1 0 00 1 1 22222 000 33 000 00000000000 33 2 1 3333333333333333333333333333333333333333333333 555555 33 33 2 2 3333 555 11 9999999 0 999 4 4 3 4 1 8 4 4 9999 5 00 6 6 4 777777 7777 222 3 1111 7 7 99 6 6 3 6 1 6 6 66 0 8 5 77 0 1 3 0 0 11 0 1 111 6 3 5555 3 0 3 22 88 88 3 3 222222 1 3 5 4 2 2 4 3 6 1 8 999999 66 0 22 6666666 5 1 5 22 0 5 1 6 6 6 6 22
lowQualScore : . . . .. . . ..... ... .. ... ........... .. . . .............................................. ...... .. .. . . .... ... .. ....... . ... . . . . . . . . .... . .. . . . ...... .... ... . .... . . .. . . . . . . . .. . . . .. . . . . . .. . . ... . . .... . . . .. .. .. . . ...... . . . . . . . . . . . ...... .. . .. ....... . . . .. . . . . . . . ..
lowQualScore : 0 0 7 77 0 4 55555 000 99 555 77777777777 77 7 5 6666666666666666666666666666666666666666666666 666666 77 99 9 9 1111 888 44 7777777 9 777 4 0 3 4 1 9 4 4 4444 0 77 7 7 6 555555 5555 555 3 3333 3 8 22 7 7 5 7 0 7 4 88 8 0 0 00 8 4 2 6 8 22 8 0 222 2 2 3333 7 7 7 00 33 33 0 0 000000 0 0 5 0 5 5 7 3 7 0 3 000000 33 5 00 0000000 0 0 0 00 0 0 0 0 0 0 0 00
consensus : NTGCANCTCAAAT--ANTTATGTCTCC-----CCTCTTCCA---GG--GG-AAGACAT--TG-------TTT--T-TGTACTTTCTG---T------------C--------CGTC------------C-G--TCT----G-TCTGTCACAA--AAT--CT-TGTG-AACG----C---TTCTCCTT-TATG----CGGCTTA--TC-GGATAG-AC-T-GAAACTTT-GTACA-ATG-CTT----CATTGCC-ATTTGTAGAN-GTG-CAT-ATTGTCGGGACAGGAGGATC----C-AATCATT-TT-CCTTAAAGTTANGGTGGATCTAAGAGGGGTGGG--GGG-TGT-AAAA-TAGCTT-GTGAACACTTCTCCTA-TATGACTTATCGGATAGACTTGAAACTTTGTACAATGCTTCATTGCCATTCGCAGATGTGCATNTTGTCNGGACAGGAGGATCCAATTATTTTCCTT-AAGTTATGGTAGATCTAAGAGGG-GTAGAGAATGTAAA--AGCCTNTAGAACACTTATCTACTACNTGGCCTACCGGATAGACGCGAGACTTTGTNCAATGCTTGCAGATGTNCATATTNTCGGGAC-AGGAGGATCCAATTGTTATCC----TAAAAGTTATAG-GGATCTAAGAGGNGTGGAGGATGTAAACGTTTCCTATATGGCTTAT---AGCCTAGCCTTGAAAGTTTGTGTACCAGTCCTGTTTTGTGTTGCATGCAACAATGACAT
Reference ( family-883 ) : NTGCANCNCAAGTTAANTTATGTCTCC-----CCTCTTCCA---GG--GG-AAGACAT--TG-------TTT--T-TGTACTTTCTG---T------------C--------CGTC------------C-G--TCT----G-TCTGTCACAA--AAT--CT-TGTG-AACG----C---TTCTCCTT-TATG----CGGCTTA--TC-GGATAG-AC-T-GAAACTTT-GTACA-ATG-CTT----CATTGCC-ATTTGTAGAA-GTG-CAT-ATTGTCGGGACAGGAGGATC----C-AATTATT-TT-CCTTAAAGTNANGGTGGATCTAAGAGGGGTGGG--GGG-TGT-AAAA-TAGCTT-GTGAACACTTCTCCTA-TATGACTTATCGGATAGACTTGAAACTTTGTACAATGCTTCATTGCCATTTGTAGATGTGCACATTGTCAGGACAGGGGGATCCAATTATTTTCCTT-AAGTTATGGTGGATCTAAGAGGGTGTAGAANAGCTAAA--AACCTTTGGAACACT--TT--CTATNTGGCTTATCGAATAGACTTGAAACTTTGTACAATGCTTGCAGATGTGCATATTGTCAGGAC-AGGAGGATCCAATTATTTTCC----TNAAAGTTATAGANGATCTAAGAGGGGTGGAGGATGTAAACACTTCCTATATGGCTTATCAAGGAATAGACTTGNAACTTTGCATA-CAGTGCTNTTTCGCGTCGCATGCAGCGGTGACAT
gi|1 : TGCATTTCAAAT--ATTTATTTCTCG-----CCTCTTCCA---GG--GG-AAGACAT--TG-------TTT--T-TGTGCTTACTG---T------------C--------CATC------------C-G--TTT----G-TCTGTCACAA--AAT--CT-TGTA-AACG----C---TTCTCCTTGTATA----CAGCTTA--TC-GGATAG-AA-T-GTAACTTT-GTGCA-ATG-CTT----CATTGTC-AGTTGCAGAA-GTG-AAT-ATTTCCTGGCCAGGAGGATA----C-AATTCTT-TT-CCTTACAGTAAAGATGGATCTAAGAGGGATGGA--AGG-TGT-AAAAATAGCTT-GTGAACACTTCCCCTA-TATGACTTATCAGATAGACTTGAAACTTTGTACAATGCTTCATTGCTATTTGTAGATGTGCATATTGTCTGGACAGGAGAAATCACTTATTTTCTAT-ACATTATGATGGATCTAAGAGGATGTAAAAAA---AAA--AACCTTTAAAACATTTATC--CTATTTGGCCTATCAGATAGACTTGAAAC-TTGTTCAATGCTTGCAGATGTGCATATTCTCGGGGC-AGAAGGATCCAATTGTTATCC----TAAAAGTTTTAGAGGATCTAAGAGGTGTGGAGGATGTAAACGTTTCCTATATGGCTTAT---AGCCTAGCCTTGAAAGTTTGTGTACCAGTCCTGTTTTGTGTTGCATGCAACAATGACAT
gi|10 : tTTATGTCTCC-----CCTCTTCCAT--GGGTGG-CAAACATA-CG--------TT--T-TGTACTTTCTG---T------------A--------TGTT------------C-AGTTCT----A-CCTGTCAC-A--AAT--CT-TGTGAAACGGGGTC---TCCTCCTG-TATT----TGA---A--T----ATAGAAT-T-GAAAAATT-TTACA-GTG-CTTACAACATTGCC-A
gi|14 : TCCA---CG--GG---GATAT--TGACAAGAGTTT--T-TGTACTTTCTG---G------------C--------C---------------------------G-TCTGTCACAA--AAT--C--TGTG-AAAC----C---TTCTCC---TAC-----CAGTTT---TC-AAATAG-CCTT-GAAA-TTT-GTA-G-ATG-----------TGCC-ATT
gi|19 : TGCAACTTAAATTAAATTATGT---C-----CCTCTTCCA---GG--GT---GACAT-----------TTT--T-TCTACTT--CG---T---------------------CGTC------------C-A--TCT----G-TCTGTCA----------CT-TG------------------TCCCC-TATA----CAGTTTG--TC-GGATAG-at
gi|2 : ATAT-AC-TTAAAACTTT-GTGCA-ATG-TTT----CATTGCC-ATTTATTGAA-GTG-CAT-AATGCTGGAACAGGAGGATT----C-AATCATT-TTACTTTTAAGTTACAGAGGATCTAAGAGGGGTGGGATGGGCTGT-TAAA-TATATT-GTGAACACTT---CTA-TATGACTTATCAAAGAGACTTATAACTTTGCACAATGCTTTATTGCCAGTTGCAGAAGTGTATTTTGTCTGGACAGGAGGATCCAATCATTTTCCTTAAAGTTATGGTAGATCTAAGAGGG-ATAGAGTGTGTAAAATAGCCTGT-GAACACT--TCTACTACATGGCTTACTGAATAAATGCGAGACTTTGTACAATACTT
gi|2 : AA--AATAGCC-TGTG-AACA----C---TTCTACTA-CATG------GCTTA--CT-GAATAA-ATGC-GAGACTTT-GTACA-ATA-CTT----TAATATC-ATTTAATGAT-GTT-CAC-ATTATtaatatcatttaatgatgttcacattattctaaccaagga
gi|24 : atatacttaaaactttgtgcaatgtttcattgccatttattgaagtgcataatgctggaacaggaggattcaatcattttacttttaagttacagaggatctaagaggggtgggatgggctgttaaatatattgtgaacacttctatatgacttatcaaagagacttataactttgcacaatgctttattgccagttgcagaagtgtattttgtctggacaggaggatccaatcattttccttaaagttatggtagatctaagagggatagagtgtgtATGTTCATATTGTTTGAACTAAGGGTAT---ACTATTTTCG----TAAGAGTTAAAACGGACCAAGGAGGAGTGtctaaccaagga
gi|28 : G--GG-GAGACAT--TG-------TTT--T-TGTACCCTCTG---T------------C--------CATCAG----------T-G--TCT----C-CCCGTCtttagtagctttttttcgtgtggaaagg
gi|3 : gtaatggattatatcgagtaccaatttccaacccttaatatCTCTTCCA---GG--GC-A-GACATATTG-------TTTAATATGTACTTTCTG---T------------C--------TATC------------C-A--TCT----G-AC----ACAA--AG---CT-GGTG-AAGA----C---TTTTT-TT-TATA----CGGCTTA--TC-AGAGAG-AC-T-----------------TG-CTT----CATTGCC-ATTTGTAGAT-GTG-CAT-ATTGTTAGAACAGGAGGATTCATGC-AGTTATT-TT-CCTC-AAGTTATGGTGGATCTAAGAGGGGTGGG--AGA-TAT-TATA-TAGTTT-GTGAATATAT---CTA-TTTGGGTTATTGGATG-----GAAACTATGTATAATGCTGCATTGCTAT---CACATGTACAT-TTGTCAGGACAGAGGGTTCCAATTATTTTCCTT-AA--------AGATCTAAGAGGG-GTGGAGAATGTAAA--A
gi|30 : atgatgctcaacacttgcctttC-----CCTCTTCCA---AT--GG-AA-ACAA--TG-------TTT--G-TGTACTTTCTG---T------------CAGTCAGTTCGTT------------C-G--TCT----G-TCTGGCTCAA--GAC--CT-TGTA-AAAG----C---TTCTCCt
gi|34 : TTATGTCTCT-----CCTCTTCCA---GG--GGTAGGATCT--CA-------GTT--A-TGTGCTTTCTG---C------------C--------TGTC------------------CT----G-TCTGTCACTA--TAT--CT-TACG-AACG----
gi|4 : AATTATGTCTCCGGAACTCTGTTCTA---GA--GG-GGGACAT--TG-------TTT--T-TGTACCTTCTG---TACATCGGTCTGTC--------TGTC------------C-A--TCT----G-TCAGTCACAA--AAT--CT-CGTG-AACG----CGTCTCCTCCTT-TATG----C--CTTA--TC-AGATAG-ACAT-GAAACTTG-GTACA-ATA-CTT----CATTTCC-GTTTGTAGAT-ATG-CAC-ATTGTCAGGACAGGAGAATC----C-AATTATT-TT-CC-TAAATCGAAG---------AGAGGGATGGA--GGA-TGT-AAAA-TAGCTT-
gi|41 : tataatgcatataagtattgtacCTCCTCCA---GG--G--ATTACAT--T---------TT--T-TGTACTTCCTG---T------------C--------------------------A--TTT--------TGTCACAC--AAT--CT-TCTG-ATCG----C---TTCTCCa
gi|44 : T--TG-------TTT--T-CATACTTTCTG---T------------C--------TGTC------------A-G--GCTTTCAG-TCTGTTTCAA--AAT--CT-TGTG-AATG----C---TCCTCC
gi|46 : TATGTC--C-----CCTTCCACA---GG--AG-AAGACAT--TC-------ATT--T-TGTACTTGCTG--------------------------GT-------------C-A--TCT----G-TCTGTCACAA--A
gi|49 : TACTTTCTG---T------------C--------CGTCTGTTCACCTAGCC-G--TCT----G-TTTGTCACAA--AAT--CT-CGTG-AAC
gi|5 : ACAGGAGGATC----CCAATCGTT-------------------GGATCTA-GAGGG-TGGG--GGG-TTTAAAAA-TAGCTTCATGAACA-TTTTCC-A-CATGA-GTATCGGATGACCTTGA---TATGTA---------ATTATCATTCAT-GATGTCTACATTGTTCTGACCAGAGGATCTAA-TATTTTC
gi|50 : CAGGAC-AGGAGGGTCCAATTGTTATCCAAAAAAAAAGTTATAG-CGATCTAAGAGgatataatctgaagagtgttttatcagttctttcatgtacaagggtatattcacttacctactggttcattcacatagcagttcttattcttgtatcatatcacaataat
gi|51 : TG---T------------G--------CTTC------------CTG--TCT----G-TCTGTCACAA--AAT--CT-TACC-AACG----G---TTCTCCT
gi|56 : --GG-GAGACAT--TG-------TTT--T-TGTACCTCCTG---T------------C--------CATC------------T-G--TCT----C-CCTGcgtataca
gi|57 : --GG-GAGACAT--TG-------TTT--T-TGTACCTCCTG---T------------C--------CATC------------T-G--TCT----C-CCTG
gi|6 : TCTCCTTATATG----AGCTTTAATTC-AATTAA-AC-T-GAAACTTTTGTACA-ATGGCTT----ATTTGCCCATTTGTAGCATGTGGCATTATCGTCAGGACAGG-GGATC----CAAATCATTGTT-CCTAAAAGTTATGATAAATATA-----------------TGT-AA----------------ATCCCTCATATTATGGCTTATGGAATAAACTTGAAACTTT-TACAGTGCTTCA-TGCCA--TGCAGCGGTGC-CCTTGTCAGGA-AGGGGGA
gi|8 : tatatacaCAAGT--ATTTATGTCTCC-----CATCTTCCATTTAG--GA-ACGACAT--AG-------TTT--T-TCTA------GAATT------------C--------CGT---------------G--TCT----GTTCTGTT-CAACCAAT--CTCCGTG--ACGGTTTC---TCCTCCTC-TATGATCTCCACTT---TCAGGATAG-CT-T-GAAACTTTGGTACAGATG-CTT----CATT
36 sequences could not be aligned to this reference sequence:
Unaligned ( gi|7 ): ATGATGTTGACATTGTTTTGACCAGAGATCGAATATTGTCCTACAATTTATACTAGACCAAAGAAGAGTGTTATAGCTTTTCTCATGTATAAGGGCAATGCCATATGTTCACTTTCTTACTGATACTTCAGCATAAGTCATTATTTTTGTATCATATGCAAATGA
Unaligned ( gi|9 ): TGTTCTGACTAGAGATCTAACATTTTCCTACAGTTTACAGTGGTCCCAAGAAGAGTTTTTTATAGCTTTTTTTATGTACAAGGATATGTTCACTTTCCCACTGGTACTTCAGCATAACAGTTTTTATTTTTGTATCATGCACAGCAGTGACA
Unaligned ( gi|11 ): GATATTCACATTATTTTAATTGCGGTTCTAATATTCTCGTAAAATTTACAATGGATCAAAAGGGAGTGCTGTACGCCTCTTTTCATGTATATGGGTAAGTTCAATTTATACTGCTACTTCAGCATAGCAGTTGTTTTTGTA
Unaligned ( gi|12 ): GATGATGTTGACATTGTTTTGACCAGAGATCTAATATTGTCCTACAATTTACATTAGATCAAAGAAGAGTGTTATAGCTTTTTTCATGTATAAGGTAATGTTCAATTTCTAACTGATACTTCAACATAACAGTCATTAT
Unaligned ( gi|13 ): TATGCACATTGTTCTCTAAAGGATATGAAAATTTCCCACAATTTACAGTGGAGTGTTTTAGAGCTATTTCGTGTGCAATATTGGGTATTTGAACAACATAACAATTCTTTTTTATATCATATACAACAATGAGA
Unaligned ( gi|15 ): AGAAAGTGTCATAGTGTTTTTTTTTTCATGTACAAGAATATTATTCATTCACGTACAAGATATATATGTTCACTTTCCTACTGGTACTTCAGCACAACAGTCATTGTATCATT
Unaligned ( gi|16 ): TAGTGTTTTATAGCTTTTTTTTTTAATGAAGAAAGGTAAGTTTACTTACCTAAGTGGTACTTCAGCATAACAGTCATTATTTTCGTATCATAAACAACGATGGCATT
Unaligned ( gi|17 ): TCAAACAAAAGTGTTTCATCGCTTCTTCATGTAATTAGTTATGTCCAATGTTTCTACTGACACTTCAATATAACAGTCATTATTTTTGTAACATGGCACCAACAT
Unaligned ( gi|18 ): GCTTTATAGCCTTTCTCATGTTGAAAAGTATATTCACTTTCCTACAGGTACAGGTACTTCAGCACACCAGTTGTTATTTTTGTATCATATACATGTAACAA
Unaligned ( gi|20 ): AATGTTTTATAAAATACTCTTTTTTTATGCACAAGGGTATGTTCACTTACTTACTGGTATATCTATATCATTTATTCTTATTAAATCCAACCATGACAT
Unaligned ( gi|21 ): TTATAGCTTTTTTTCATGTACAAGGGTATTTTCTTTTTTCTACTGGTACTTTAGCATAACAGTAACTGTATTTATTTTTTGTATCATATACAACGACA
Unaligned ( gi|22 ): TTATGGCACCGTTGGCATTAAAACTAGGGATATAACATTCCCCTACGAATTACAGTAGACCAACGAGTTGCCCTCTGTAGCTTTCTTCATGTGCAAGG
Unaligned ( gi|23 ): ACACAATTTCAGTGGATAAAGAGAAGAGTTTTCACATACAAGTGTATGCTCACTTTCCTACTAGTACTTCAGCATAACCGTCAGTATACAACAATA
Unaligned ( gi|25 ): TAGCTTTTTCCATGTACAAGGGTAAGTCCACTTTCCTACTGGTACTTAGCAATATTAACTGTCATTATTTTGTATCATACACATCAATGACATT
Unaligned ( gi|26 ): ATAGCTTTTGTTCCTGTATAAGGTTATATTCACTTTCCTACTGGTACTTTAGCATCATAGTCATTAGTTTGGTGTCATACACAACAATGACATT
Unaligned ( gi|27 ): ATGTTCACATTGTTCGAACTATAGTCAAGAGATATTTTTTCTACAATATACAGTGGACCAAAGTTTTTTGTAGCTTTTTTCATGCGCAAGG
Unaligned ( gi|29 ): TATAGTTTTTTCATGTATAAGGGTATGTTCACTTTCTTACTGATACTTCAGCATAACAGTCATTATTTTTGTATCATATGCAAATGA
Unaligned ( gi|31 ): CTTTTTCATGTATAAGGATATGCTCACTTTCCTATACTTCAGCATAACATTTACCGGTATCATTACTGTATCATATACAACAATAT
Unaligned ( gi|32 ): TGAACTACGGATATAATAGTTTCCTACAATTTACAATGGACCAAAGAGGAGTACGTGTTTTGTAGTTTTTCTCATGTGCAAGG
Unaligned ( gi|33 ): TAGCTTCTCATGCACAAGAATATGGTCACTTTCGTATTGGTACATCAGCATAATAACAGTCATTATTTTTGTATCATAATGC
Unaligned ( gi|35 ): GTAGCTCTTTATGTACAAATGTATGTTCATTTTCCCACTGGCCCTTAGCATAACAGTCATTGATATGTATCATACACGA
Unaligned ( gi|36 ): GTAGCTTTGTTCATGAACAAAGGCATGTTCACTTTCCAACTGGAACTTTAAGCATTTTGTATCATGTACAGCAATGTC
Unaligned ( gi|37 ): ATGTACAGGGGCATGTTCACTTTCCTACTGGTACATCATATTACTTCTGCACAATGGTCATCATTTTTGTATCATG
Unaligned ( gi|38 ): GTTATGTTCACTTTCTTGACTCATCTTCAGCATACAATCATTATTTTTGTATTATATGCAAAAACGAAAT
Unaligned ( gi|39 ): AGGTATGTTCACTTTCCCTATAAGTACATCAGTATTGTTCATTAGGTTTTGTATCGTATACAGCAATGT
Unaligned ( gi|40 ): TTTTTCATGTACAATTCAACGTTCACTTTCCTACTGGTACTTCAGCATAACAGTCATTATATATGCAT
Unaligned ( gi|42 ): GTTATACCTTTTCATGCATATAAAGGGTATGTTCACTTTCTTACTGATACTTCACTTCAGCATAA
Unaligned ( gi|43 ): ATAGTTTTGTTCATGCATCAGGGTATATTTAATTTCTTACTGTTACTTCAGCGTAAAAGTAATTT
Unaligned ( gi|45 ): CTTTTTTTTCATGTACGAGGGTATCTTCGTTTTCCTACTGGTACTTCAGCATAACAGTCATTA
Unaligned ( gi|47 ): ATGTACAGAGATATGTTCACTTTCCTACTTCAGCCTAACAGTCATTGACATTAGT
Unaligned ( gi|48 ): AGTAGTATTTCAGCACTACATTCATTATTTTTGTATCATATACAACAATGACATT
Unaligned ( gi|52 ): TTTGATGATGTTCACATTGTTCTAACCAAGGATCTAATATTTTCGTACAATTT
Unaligned ( gi|53 ): GTCATAGCTCTAATATTTTCCTACAATTTACATAATAGATCAAAGAAGAGTGT
Unaligned ( gi|54 ): ACAATGGACCAAGGAGGAGTGCTTTGTAGCTTCTTTCAAATGTGTAGGG
Unaligned ( gi|55 ): TACAATGGACCAAAGAGGAGTGTTTTGTAGCTATTTTCATATGCAAGG
Unaligned ( gi|58 ): ATATTTAGTATTATTGTATCACATACAATAATGG
Alignments
lowQualScore : 11 11111111 111 111 3333333333333333333333333333333333333333333333 11111111 11 111111111 111 1 1 1111 1111111 1111 11 11 1111 1 11 1 11 11 1 99999999999999 44444 22
lowQualScore : 1 33 1 22222222 000 33 000 999999999999 33 2 3333333333333333333333333333333333333333333333 555555 33 3 3 55555555 00 999999999 222 66 4 0 5 2 0 5 5 0000 5 6 1 6 6 6 5 0 9999999 5 5 6666 5 8888 5 3 99 6 6 3 6 1 6 6 66 0 8 5 77 0 1 3 0 0 77 0 1 0 8 1 3 5555 3 3 7 88 1 5 88 88 1 2 5 1 11111111111111 1 1 66666 4 22 1
lowQualScore : . .. . ........ ... .. ... ............ .. . .............................................. ...... .. . . ........ .. ......... ... .. . . . . . . . .... . . . . . . . . ....... . . .... . .... . . .. . . . . . . . .. . . . .. . . . . . .. . . . . . . .... . . . .. . . .. .. . . . . .............. . . ..... . .. .
lowQualScore : 0 88 0 99999999 000 99 555 999999999999 77 7 6666666666666666666666666666666666666666666666 666666 99 1 1 11111111 88 000000000 000 11 4 0 0 5 0 0 0 6666 7 7 0 7 7 3 7 1 1111111 0 0 9999 0 2222 1 4 22 7 7 5 7 0 7 4 88 8 0 0 00 8 4 2 6 8 00 8 0 8 8 0 2 3333 7 3 3 33 0 5 55 55 0 5 5 0 00000000000000 0 0 55555 0 55 0
consensus : NTGCANCTCAAAT--ANTTATGTCTCC-----CCTCTTCCA---GG--GG-AAGACAT--TG-------TTT--T-TGTACTTTCTG---T------------C--------CGTC------------C-G--TCT----G-TCTGTCACAA--AATCT-TGTG-AACG----C---TTCTCCTT-TATG----CGGCTTA--TC-GGATAG-AC-T-GAAACTTT-GTACA-ATG-CTT----CATTGCC-ATTTGTAG-ATGTG-CAT-ATTGTCGGGAC-AGGAGGATC----C-AATCATT-TT-CCTNAAAG-TTACGGTGGATCTAAGAGGGGTGGG--GGG-TGT-AAAA-TAGCTT-GTGAACACTTCTCCTA-TATGACTTATCGGATAGACTTGAAACTTTGTACAATGCTTCATTGCCATTCGCAGATGTGCATNTTGTCNGGACAGGAGGATCCAATTATTTTCCTT-AAGTTATGGTAGATCTAAGAGGG-GTAGAGAATGTAAA--AGCCTNTAGAACACTTATCTACTACNTGGCCTACCGGATAGACGCGAGACTTTGTNCAATGCTTTAATANCATTTAATGATGTNCACATTNTCGGGGCAGGAGGGTCCAATTGTTATCCAAAANAAAAGTTNTAGANGATCTAAGAGGTGTGGAGGATGTAAACGTTTCCTATATGGCTTATAGCCTAGCCTTGAAAGTTTGTGTACCAGTCCTGTTTTGTGTTGCATGCAACAATGACAT
Reference ( family-883 ) : NTGCANCTCAAAT--ANTTATGTCTCC-----CCTCTTCCA---GG--GG-AAGACAT--TG-------TTT--T-TGTACTTTCTG---T------------C--------CGTC------------C-G--TCT----G-TCTGTCACAA--AATCT-TGTG-AACG----C---TTCTCCTT-TATG----CGGCTTA--TC-GGATAG-AC-T-GAAACTTT-GTACA-ATG-CTT----CATTGCC-ATTTGTAG-ANGTG-CAT-ATTGTCGGGAC-AGGAGGATC----C-AATCATT-TT-CCTTAAAG-TTANGGTGGATCTAAGAGGGGTGGG--GGG-TGT-AAAA-TAGCTT-GTGAACACTTCTCCTA-TATGACTTATCGGATAGACTTGAAACTTTGTACAATGCTTCATTGCCATTCGCAGATGTGCATNTTGTCNGGACAGGAGGATCCAATTATTTTCCTT-AAGTTATGGTAGATCTAAGAGGG-GTAGAGAATGTAAA--AGCCTNTAGAACACTTATCTACTACNTGGCCTACCGGATAGACGCGAGACTTTGTNCAATGCTT-----GCA------GATGTNCATATTNTCGGGACAGGAGGATCCAATTGTTATCC----TAAAAGTTATAG-GGATCTAAGAGGNGTGGAGGATGTAAACGTTTCCTATATGGCTTATAGCCTAGCCTTGAAAGTTTGTGTACCAGTCCTGTTTTGTGTTGCATGCAACAATGACAT
gi|1 : TGCATTTCAAAT--ATTTATTTCTCG-----CCTCTTCCA---GG--GG-AAGACAT--TG-------TTT--T-TGTGCTTACTG---T------------C--------CATC------------C-G--TTT----G-TCTGTCACAA--AATCT-TGTA-AACG----C---TTCTCCTTGTATA----CAGCTTA--TC-GGATAG-AA-T-GTAACTTT-GTGCA-ATG-CTT----CATTGTC-AGTTGCAG-AAGTG-AAT-ATTTCCTGGCC-AGGAGGATA----C-AATTCTT-TT-CCTTACAG-TAAAGATGGATCTAAGAGGGATGGA--AGG-TGT-AAAAATAGCTT-GTGAACACTTCCCCTA-TATGACTTATCAGATAGACTTGAAACTTTGTACAATGCTTCATTGCTATTTGTAGATGTGCATATTGTCTGGACAGGAGAAATCACTTATTTTCTAT-ACATTATGATGGATCTAAGAGGATGTAAAAAA---AAA--AACCTTTAAAACATTTATC--CTATTTGGCCTATCAGATAGACTTGAAAC-TTGTTCAATGCTT-----GCA------GATGTGCATATTCTCGGGGCAGAAGGATCCAATTGTTATCC----TAAAAGTTTTAGAGGATCTAAGAGGTGTGGAGGATGTAAACGTTTCCTATATGGCTTATAGCCTAGCCTTGAAAGTTTGTGTACCAGTCCTGTTTTGTGTTGCATGCAACAATGACAT
gi|10 : tTTATGTCTCC-----CCTCTTCCAT--GGGTGG-CAAACATA-CG--------TT--T-TGTACTTTCTG---T------------A--------TGTT------------C-AGTTCT----A-CCTGTCAC-A--AATCT-TGTGAAACGGGGTC---TCCTCCTG-TATT----TGA---A--T----ATAGAAT-T-GAAAAATT-TTACA-GTG-CTTACAACATTGCC-A
gi|14 : TCCA---CG--GG---GATAT--TGACAAGAGTTT--T-TGTACTTTCTG---G------------C--------C---------------------------G-TCTGTCACAA--AATC--TGTG-AAAC----C---TTCTCC---TAC-----CAGTTT---TC-AAATAG-CCTT-GAAA-TTT-GTA-G-ATG-----------TGCC-ATT
gi|19 : TGCAACTTAAATTAAATTATGTC--------CCTCTTCCA---GG--GT---GACAT--T---------TT--T-TCTACTTC--G---T------------C---------GTC------------C-A--TCT----G-TCTGTCA--------CT-TG------------------TCCCC-TATA----CAGTTTG--TC-GGATAG-at
gi|2 : ATAT-AC-TTAAAACTTT-GTGCA-ATG-TTT----CATTGCC-ATTTATTG-AAGTG-CAT-AATGCTGGAAC-AGGAGGATT----C-AATCATT-TTACTTTTAAG-TTACAGAGGATCTAAGAGGGGTGGGATGGGCTGT-TAAA-TATATT-GTGAACACTT---CTA-TATGACTTATCAAAGAGACTTATAACTTTGCACAATGCTTTATTGCCAGTTGCAGAAGTGTATTTTGTCTGGACAGGAGGATCCAATCATTTTCCTTAAAGTTATGGTAGATCTAAGAGGG-ATAGAGTGTGTAAAATAGCCTGT-GAACACT--TCTACTACATGGCTTACTGAATAAATGCGAGACTTTGTACAATACTTTAATATCATTTAATGATGTTCACATTAT
gi|24 : -ATGTT-CAT-ATTGTTTGAACTAAGGGTAT--------ACTATT-TT-CGTAAGAG-TTAAAACGGACCAAGGAGGAGTGtctaaccaagga
gi|28 : G--GG-GAGACAT--TG-------TTT--T-TGTACCCTCTG---T------------C--------CATCAG----------T-G--TCT----C-CCCGTCtttagtagctttttttcgtgtggaaagg
gi|3 : gtaatggattatatcgagtaccaatttccaacccttaatatCTCTTCCA---GG--GC-A-GACATATTG-------TTTAATATGTACTTTCTG---T------------C--------TATC------------C-A--TCT----G-AC----ACAA--AG-CT-GGTG-AAGA----C---TTTTT-TT-TATA----CGGCTTA--TC-AGAGAG-AC-T-----------------TG-CTT----CATTGCC-ATTTGTAG-ATGTG-CAT-ATTGTTAGAAC-AGGAGGATTCATGC-AGTTATT-TT-CCTC-AAG-TTATGGTGGATCTAAGAGGGGTGGG--AGA-TAT-TATA-TAGTTT-GTGAATATAT---CTA-TTTGGGTTATTGGATG-----GAAACTATGTATAATGCTGCATTGCTAT---CACATGTACAT-TTGTCAGGACAGAGGGTTCCAATTATTTTCCTT-AA--------AGATCTAAGAGGG-GTGGAGAATGTAAA--A
gi|30 : atgatgctcaacacttgcctttC-----CCTCTTCCA---AT--GG-AA-ACAA--TG-------TTT--G-TGTACTTTCTG---T------------CAGTCAGTTCGTT------------C-G--TCT----G-TCTGGCTCAA--GACCT-TGTA-AAAG----C---TTCTCCt
gi|34 : TTATGTCTCT-----CCTCTTCCA---GG--GGTAGGATCT--CA-------GTT--A-TGTGCTTTCTG---C------------C--------TGTC------------------CT----G-TCTGTCACTA--TATCT-TACG-AACG----
gi|4 : AC--AATTATGTCTCCGGAACTCTGTTCTA---GA--GG-GGGACAT--TG-------TTT--T-TGTACCTTCTG---TACATCGGTCTGTC--------TGTC------------C-A--TCT----G-TCAGTCACAA--AATCT-CGTG-AACG----CGTCTCCTCCTT-TATG----C--CTTA--TC-AGATAG-ACAT-GAAACTTG-GTACA-ATA-CTT----CATTTCC-GTTTGTAG-ATATG-CAC-ATTGTCAGGAC-AGGAGAATC----C-AATTATT-TT-CCT--AAA-TCGAAG--------AGAGGGATGGA--GGA-TGT-AAAA-TAGCTT-
gi|41 : tataatgcatataagtattgtCTCCTCCA---GG--G--ATTACAT--T---------TT--T-TGTACTTCCTG---T------------C--------------------------A--TTT--------TGTCACAC--AATCT-TCTG-ATCG----C---TTCTCCa
gi|44 : T--TG-------TTT--T-CATACTTTCTG---T------------C--------TGTC------------A-G--GCTTTCAG-TCTGTTTCAA--AATCT-TGTG-AATG----C---TCCTCC
gi|46 : TATGTC--C-----CCTTCCACA---GG--AG-AAGACAT--TC-------ATT--T-TGTACTTGCTG--------------------------GT-------------C-A--TCT----G-TCTGTCACAA--A
gi|49 : TACTTTCTG---T------------C--------CGTCTGTTCACCTAGCC-G--TCT----G-TTTGTCACAA--AATCT-CGTG-AAC
gi|5 : AC-AGGAGGATC----CCAATCGTT--------------------GGATCTA-GAGGG-TGGG--GGG-TTTAAAAA-TAGCTTCATGAACA-TTTTCC-A-CATGA-GTATCGGATGACCTTGA---TATGTA---------ATTATCATTCAT-GATGTCTACATTGTTCTGACCAGAGGATCTAA-TATTTTC
gi|50 : CAGGACAGGAGGGTCCAATTGTTATCCAAAAAAAAAGTTATAG-CGATCTAAGAGgatataatctgaagagtgttttatcagttctttcatgtacaagggtatattcacttacctactggttcattcacatagcagttcttattcttgtatcatatcacaataat
gi|51 : TG---T------------G--------CTTC------------CTG--TCT----G-TCTGTCACAA--AATCT-TACC-AACG----G---TTCTCCT
gi|56 : --GG-GAGACAT--TG-------TTT--T-TGTACCTCCTG---T------------C--------CATC------------T-G--TCT----C-CCTGcgtataca
gi|57 : --GG-GAGACAT--TG-------TTT--T-TGTACCTCCTG---T------------C--------CATC------------T-G--TCT----C-CCTG
gi|6 : TCTCCTTATATG----AGCTTTAATTC-AATTAA-AC-T-GAAACTTTTGTACA-ATGGCTT----ATTTGCCCATTTGTAGCATGTGGCATTATCGTCAGGAC-AGG-GGATC----CAAATCATTGTT-CCTAAAAG-TTATGATAAATATA-----------------TGT-AA----------------ATCCCTCATATTATGGCTTATGGAATAAACTTGAAACTTT-TACAGTGCTTCA-TGCCAT--GCAGCGGTGC-CCTTGTCAGGA-AGGGGGA
gi|8 : tatatacaCAAGT--ATTTATGTCTCC-----CATCTTCCATTTAG--GA-ACGACAT--AG-------TTT--T-TCTA------GAATT------------C--------CGT---------------G--TCT----GTTCTGTT-CAACCAATCTCCGTG--ACGGTTTC---TCCTCCTC-TATGATCTCCACTT---TCAGGATAG-CT-T-GAAACTTTGGTACAGATG-CTT----CATT
gi|9 : ttaGATC----T-AA-CATT-TT-CC-TACAGTTTACAGTGGTCCCAAGAAGAGT
35 sequences could not be aligned to this reference sequence:
Unaligned ( gi|7 ): ATGATGTTGACATTGTTTTGACCAGAGATCGAATATTGTCCTACAATTTATACTAGACCAAAGAAGAGTGTTATAGCTTTTCTCATGTATAAGGGCAATGCCATATGTTCACTTTCTTACTGATACTTCAGCATAAGTCATTATTTTTGTATCATATGCAAATGA
Unaligned ( gi|11 ): GATATTCACATTATTTTAATTGCGGTTCTAATATTCTCGTAAAATTTACAATGGATCAAAAGGGAGTGCTGTACGCCTCTTTTCATGTATATGGGTAAGTTCAATTTATACTGCTACTTCAGCATAGCAGTTGTTTTTGTA
Unaligned ( gi|12 ): GATGATGTTGACATTGTTTTGACCAGAGATCTAATATTGTCCTACAATTTACATTAGATCAAAGAAGAGTGTTATAGCTTTTTTCATGTATAAGGTAATGTTCAATTTCTAACTGATACTTCAACATAACAGTCATTAT
Unaligned ( gi|13 ): TATGCACATTGTTCTCTAAAGGATATGAAAATTTCCCACAATTTACAGTGGAGTGTTTTAGAGCTATTTCGTGTGCAATATTGGGTATTTGAACAACATAACAATTCTTTTTTATATCATATACAACAATGAGA
Unaligned ( gi|15 ): AGAAAGTGTCATAGTGTTTTTTTTTTCATGTACAAGAATATTATTCATTCACGTACAAGATATATATGTTCACTTTCCTACTGGTACTTCAGCACAACAGTCATTGTATCATT
Unaligned ( gi|16 ): TAGTGTTTTATAGCTTTTTTTTTTAATGAAGAAAGGTAAGTTTACTTACCTAAGTGGTACTTCAGCATAACAGTCATTATTTTCGTATCATAAACAACGATGGCATT
Unaligned ( gi|17 ): TCAAACAAAAGTGTTTCATCGCTTCTTCATGTAATTAGTTATGTCCAATGTTTCTACTGACACTTCAATATAACAGTCATTATTTTTGTAACATGGCACCAACAT
Unaligned ( gi|18 ): GCTTTATAGCCTTTCTCATGTTGAAAAGTATATTCACTTTCCTACAGGTACAGGTACTTCAGCACACCAGTTGTTATTTTTGTATCATATACATGTAACAA
Unaligned ( gi|20 ): AATGTTTTATAAAATACTCTTTTTTTATGCACAAGGGTATGTTCACTTACTTACTGGTATATCTATATCATTTATTCTTATTAAATCCAACCATGACAT
Unaligned ( gi|21 ): TTATAGCTTTTTTTCATGTACAAGGGTATTTTCTTTTTTCTACTGGTACTTTAGCATAACAGTAACTGTATTTATTTTTTGTATCATATACAACGACA
Unaligned ( gi|22 ): TTATGGCACCGTTGGCATTAAAACTAGGGATATAACATTCCCCTACGAATTACAGTAGACCAACGAGTTGCCCTCTGTAGCTTTCTTCATGTGCAAGG
Unaligned ( gi|23 ): ACACAATTTCAGTGGATAAAGAGAAGAGTTTTCACATACAAGTGTATGCTCACTTTCCTACTAGTACTTCAGCATAACCGTCAGTATACAACAATA
Unaligned ( gi|25 ): TAGCTTTTTCCATGTACAAGGGTAAGTCCACTTTCCTACTGGTACTTAGCAATATTAACTGTCATTATTTTGTATCATACACATCAATGACATT
Unaligned ( gi|26 ): ATAGCTTTTGTTCCTGTATAAGGTTATATTCACTTTCCTACTGGTACTTTAGCATCATAGTCATTAGTTTGGTGTCATACACAACAATGACATT
Unaligned ( gi|27 ): ATGTTCACATTGTTCGAACTATAGTCAAGAGATATTTTTTCTACAATATACAGTGGACCAAAGTTTTTTGTAGCTTTTTTCATGCGCAAGG
Unaligned ( gi|29 ): TATAGTTTTTTCATGTATAAGGGTATGTTCACTTTCTTACTGATACTTCAGCATAACAGTCATTATTTTTGTATCATATGCAAATGA
Unaligned ( gi|31 ): CTTTTTCATGTATAAGGATATGCTCACTTTCCTATACTTCAGCATAACATTTACCGGTATCATTACTGTATCATATACAACAATAT
Unaligned ( gi|32 ): TGAACTACGGATATAATAGTTTCCTACAATTTACAATGGACCAAAGAGGAGTACGTGTTTTGTAGTTTTTCTCATGTGCAAGG
Unaligned ( gi|33 ): TAGCTTCTCATGCACAAGAATATGGTCACTTTCGTATTGGTACATCAGCATAATAACAGTCATTATTTTTGTATCATAATGC
Unaligned ( gi|35 ): GTAGCTCTTTATGTACAAATGTATGTTCATTTTCCCACTGGCCCTTAGCATAACAGTCATTGATATGTATCATACACGA
Unaligned ( gi|36 ): GTAGCTTTGTTCATGAACAAAGGCATGTTCACTTTCCAACTGGAACTTTAAGCATTTTGTATCATGTACAGCAATGTC
Unaligned ( gi|37 ): ATGTACAGGGGCATGTTCACTTTCCTACTGGTACATCATATTACTTCTGCACAATGGTCATCATTTTTGTATCATG
Unaligned ( gi|38 ): GTTATGTTCACTTTCTTGACTCATCTTCAGCATACAATCATTATTTTTGTATTATATGCAAAAACGAAAT
Unaligned ( gi|39 ): AGGTATGTTCACTTTCCCTATAAGTACATCAGTATTGTTCATTAGGTTTTGTATCGTATACAGCAATGT
Unaligned ( gi|40 ): TTTTTCATGTACAATTCAACGTTCACTTTCCTACTGGTACTTCAGCATAACAGTCATTATATATGCAT
Unaligned ( gi|42 ): GTTATACCTTTTCATGCATATAAAGGGTATGTTCACTTTCTTACTGATACTTCACTTCAGCATAA
Unaligned ( gi|43 ): ATAGTTTTGTTCATGCATCAGGGTATATTTAATTTCTTACTGTTACTTCAGCGTAAAAGTAATTT
Unaligned ( gi|45 ): CTTTTTTTTCATGTACGAGGGTATCTTCGTTTTCCTACTGGTACTTCAGCATAACAGTCATTA
Unaligned ( gi|47 ): ATGTACAGAGATATGTTCACTTTCCTACTTCAGCCTAACAGTCATTGACATTAGT
Unaligned ( gi|48 ): AGTAGTATTTCAGCACTACATTCATTATTTTTGTATCATATACAACAATGACATT
Unaligned ( gi|52 ): TTTGATGATGTTCACATTGTTCTAACCAAGGATCTAATATTTTCGTACAATTT
Unaligned ( gi|53 ): GTCATAGCTCTAATATTTTCCTACAATTTACATAATAGATCAAAGAAGAGTGT
Unaligned ( gi|54 ): ACAATGGACCAAGGAGGAGTGCTTTGTAGCTTCTTTCAAATGTGTAGGG
Unaligned ( gi|55 ): TACAATGGACCAAAGAGGAGTGTTTTGTAGCTATTTTCATATGCAAGG
Unaligned ( gi|58 ): ATATTTAGTATTATTGTATCACATACAATAATGG
Alignments
lowQualScore : 11 11111111 111 111 3333333333333333333333333333333333333333333333 11111111 11 111111111 111 1 1 1111 1111111 1111 11 11 1111 1 11 1 11 11 1 44444444444444 22222 11
lowQualScore : 1 33 1 22222222 000 33 000 999999999999 33 2 3333333333333333333333333333333333333333333333 555555 33 3 3 55555555 00 999999999 222 66 4 0 5 2 0 5 5 0000 5 6 6 6 6 5 0 9999999 5 5 0000 666666 5 3 99 6 6 3 6 1 6 6 66 0 8 5 77 0 1 3 0 0 77 0 1 0 8 1 3 5555 3 3 7 88 1 5 88 88 1 2 5 1 00000000000000 1 1 55555 1 66
lowQualScore : . .. . ........ ... .. ... ............ .. . .............................................. ...... .. . . ........ .. ......... ... .. . . . . . . . .... . . . . . . . ....... . . .... ...... . . .. . . . . . . . .. . . . .. . . . . . .. . . . . . . .... . . . .. . . .. .. . . . . .............. . . ..... . ..
lowQualScore : 0 88 0 99999999 000 99 555 999999999999 77 7 6666666666666666666666666666666666666666666666 666666 99 1 1 11111111 88 000000000 000 11 4 0 0 5 0 0 0 6666 7 7 7 7 3 7 1 1111111 0 0 0000 444444 1 4 22 7 7 5 7 0 7 4 88 8 0 0 00 8 4 2 6 8 00 8 0 8 8 0 2 3333 7 3 3 33 0 5 55 55 0 5 5 0 00000000000000 0 0 55555 0 55
consensus : NTGCANCTCAAAT--ANTTATGTCTCC-----CCTCTTCCA---GG--GG-AAGACAT--TG-------TTT--T-TGTACTTTCTG---T------------C--------CGTC------------C-G--TCT----G-TCTGTCACAA--AATCT-TGTG-AACG----C---TTCTCCTT-TATG----CGGCTTA--TC-GGATAG-AC-T-GAAACTTT-GTACA-ATG-CTT----CATTGCC-ATTTGTAG-ATGTG-CAT-ATTGTCGGGAC-AGGAGGATC----C-AATCATT-TT-CCTAAAAGTTACGGTGGATCTAAGAGGGGTGGG--GGG-TGT-AAAA-TAGCTT-GTGAACACTTCTCCTA-TATGACTTATCGGATAGACTTGAAACTTTGTACAATGCTTCATTGCCATTCGCAGATGTGCATNTTGTCNGGACAGGAGGATCCAATTATTTTCCTT-AAGTTATGGTAGATCTAAGAGGG-GTAGAGAATGTAAA--AGCCTNTAGAACACTTATCTACTACNTGGCCTACCGGATAGACGCGAGACTTTGTNCAATGCTTTAATANCATTTAATGATGTNCACATTNTCGGGGCAGGAGGGTCCAATTGTTATCCAAAANAAAAGTTNTAGANGATCTAAGAGGTGTGGAGGATGTAAACGTTTCCTATATGGCTTATAGCCTAGCCTTGAAAGTTTGTGTACCAGTCCTGTTTTGTGTTGCATGCAACAATGACAT
Reference ( family-883 ) : NTGCANCTCAAAT--ANTTATGTCTCC-----CCTCTTCCA---GG--GG-AAGACAT--TG-------TTT--T-TGTACTTTCTG---T------------C--------CGTC------------C-G--TCT----G-TCTGTCACAA--AATCT-TGTG-AACG----C---TTCTCCTT-TATG----CGGCTTA--TC-GGATAG-AC-T-GAAACTTT-GTACA-ATG-CTT----CATTGCC-ATTTGTAG-ATGTG-CAT-ATTGTCGGGAC-AGGAGGATC----C-AATCATT-TT-CCTNAAAGTTACGGTGGATCTAAGAGGGGTGGG--GGG-TGT-AAAA-TAGCTT-GTGAACACTTCTCCTA-TATGACTTATCGGATAGACTTGAAACTTTGTACAATGCTTCATTGCCATTCGCAGATGTGCATNTTGTCNGGACAGGAGGATCCAATTATTTTCCTT-AAGTTATGGTAGATCTAAGAGGG-GTAGAGAATGTAAA--AGCCTNTAGAACACTTATCTACTACNTGGCCTACCGGATAGACGCGAGACTTTGTNCAATGCTTTAATANCATTTAATGATGTNCACATTNTCGGGGCAGGAGGGTCCAATTGTTATCCAAAANAAAAGTTNTAGANGATCTAAGAGGTGTGGAGGATGTAAACGTTTCCTATATGGCTTATAGCCTAGCCTTGAAAGTTTGTGTACCAGTCCTGTTTTGTGTTGCATGCAACAATGACAT
gi|1 : TGCATTTCAAAT--ATTTATTTCTCG-----CCTCTTCCA---GG--GG-AAGACAT--TG-------TTT--T-TGTGCTTACTG---T------------C--------CATC------------C-G--TTT----G-TCTGTCACAA--AATCT-TGTA-AACG----C---TTCTCCTTGTATA----CAGCTTA--TC-GGATAG-AA-T-GTAACTTT-GTGCA-ATG-CTT----CATTGTC-AGTTGCAG-AAGTG-AAT-ATTTCCTGGCC-AGGAGGATA----C-AATTCTT-TT-CCTTACAGTAAAGATGGATCTAAGAGGGATGGA--AGG-TGT-AAAAATAGCTT-GTGAACACTTCCCCTA-TATGACTTATCAGATAGACTTGAAACTTTGTACAATGCTTCATTGCTATTTGTAGATGTGCATATTGTCTGGACAGGAGAAATCACTTATTTTCTAT-ACATTATGATGGATCTAAGAGGATGTAAAAAA---AAA--AACCTTTAAAACATTTATC--CTATTTGGCCTATCAGATAGACTTGAAACTT-GTTCAATGCTT-----GCA------GATGTGCATATTCTCGGGGCAGAAGGATCCAATTGTTATCC----TAAAAGTTTTAGAGGATCTAAGAGGTGTGGAGGATGTAAACGTTTCCTATATGGCTTATAGCCTAGCCTTGAAAGTTTGTGTACCAGTCCTGTTTTGTGTTGCATGCAACAATGACAT
gi|10 : tTTATGTCTCC-----CCTCTTCCAT--GGGTGG-CAAACATA-CG--------TT--T-TGTACTTTCTG---T------------A--------TGTT------------C-AGTTCT----A-CCTGTCAC-A--AATCT-TGTGAAACGGGGTC---TCCTCCTG-TATT----TGA---A--T----ATAGAAT-T-GAAAAATT-TTACA-GTG-CTTACAACATTGCC-A
gi|14 : TCCA---CG--GG---GATAT--TGACAAGAGTTT--T-TGTACTTTCTG---G------------C--------C---------------------------G-TCTGTCACAA--AATC--TGTG-AAAC----C---TTCTCC---TAC-----CAGTTT---TC-AAATAG-CCTT-GAAA-TTT-GTA-G-ATG-----------TGCC-ATT
gi|19 : TGCAACTTAAATTAAATTATGTC--------CCTCTTCCA---GG--GT---GACAT--T---------TT--T-TCTACTTC--G---T------------C---------GTC------------C-A--TCT----G-TCTGTCA--------CT-TG------------------TCCCC-TATA----CAGTTTG--TC-GGATAG-at
gi|2 : ATAT-AC-TTAAAACTTT-GTGCA-ATG-TTT----CATTGCC-ATTTATTG-AAGTG-CAT-AATGCTGGAAC-AGGAGGATT----C-AATCATT-TTACTTTTAAGTTACAGAGGATCTAAGAGGGGTGGGATGGGCTGT-TAAA-TATATT-GTGAACACTT---CTA-TATGACTTATCAAAGAGACTTATAACTTTGCACAATGCTTTATTGCCAGTTGCAGAAGTGTATTTTGTCTGGACAGGAGGATCCAATCATTTTCCTTAAAGTTATGGTAGATCTAAGAGGG-ATAGAGTGTGTAAAATAGCCTGT-GAACACT--TCTACTACATGGCTTACTGAATAAATGCGAGACTTTGTACAATACTTTAATATCATTTAATGATGTTCACATTAT
gi|24 : -ATGTT-CAT-ATTGTTTGAACTAAGGGTAT--------ACTATT-TT-CGTAAGAGTTAAAACGGACCAAGGAGGAGTGtctaaccaagga
gi|28 : G--GG-GAGACAT--TG-------TTT--T-TGTACCCTCTG---T------------C--------CATCAG----------T-G--TCT----C-CCCGTCtttagtagctttttttcgtgtggaaagg
gi|3 : gtaatggattatatcgagtaccaatttccaacccttaatatCTCTTCCA---GG--GC-A-GACATATTG-------TTTAATATGTACTTTCTG---T------------C--------TATC------------C-A--TCT----G-AC----ACAA--AG-CT-GGTG-AAGA----C---TTTTT-TT-TATA----CGGCTTA--TC-AGAGAG-AC-T-----------------TG-CTT----CATTGCC-ATTTGTAG-ATGTG-CAT-ATTGTTAGAAC-AGGAGGATTCATGC-AGTTATT-TT-CCTC-AAGTTATGGTGGATCTAAGAGGGGTGGG--AGA-TAT-TATA-TAGTTT-GTGAATATAT---CTA-TTTGGGTTATTGGATG-----GAAACTATGTATAATGCTGCATTGCTAT---CACATGTACAT-TTGTCAGGACAGAGGGTTCCAATTATTTTCCTT-AA--------AGATCTAAGAGGG-GTGGAGAATGTAAA--A
gi|30 : atgatgctcaacacttgcctttC-----CCTCTTCCA---AT--GG-AA-ACAA--TG-------TTT--G-TGTACTTTCTG---T------------CAGTCAGTTCGTT------------C-G--TCT----G-TCTGGCTCAA--GACCT-TGTA-AAAG----C---TTCTCCt
gi|34 : TTATGTCTCT-----CCTCTTCCA---GG--GGTAGGATCT--CA-------GTT--A-TGTGCTTTCTG---C------------C--------TGTC------------------CT----G-TCTGTCACTA--TATCT-TACG-AACG----
gi|4 : AC--AATTATGTCTCCGGAACTCTGTTCTA---GA--GG-GGGACAT--TG-------TTT--T-TGTACCTTCTG---TACATCGGTCTGTC--------TGTC------------C-A--TCT----G-TCAGTCACAA--AATCT-CGTG-AACG----CGTCTCCTCCTT-TATG----C--CTTA--TC-AGATAG-ACAT-GAAACTTG-GTACA-ATA-CTT----CATTTCC-GTTTGTAG-ATATG-CAC-ATTGTCAGGAC-AGGAGAATC----C-AATTATT-TT-CCTAAA--T--CGAAG------AGAGGGATGGA--GGA-TGT-AAAA-TAGCTT-
gi|41 : tataatgcatataagtattgtCTCCTCCA---GG--G--ATTACAT--T---------TT--T-TGTACTTCCTG---T------------C--------------------------A--TTT--------TGTCACAC--AATCT-TCTG-ATCG----C---TTCTCCa
gi|44 : T--TG-------TTT--T-CATACTTTCTG---T------------C--------TGTC------------A-G--GCTTTCAG-TCTGTTTCAA--AATCT-TGTG-AATG----C---TCCTCC
gi|46 : TATGTC--C-----CCTTCCACA---GG--AG-AAGACAT--TC-------ATT--T-TGTACTTGCTG--------------------------GT-------------C-A--TCT----G-TCTGTCACAA--A
gi|49 : TACTTTCTG---T------------C--------CGTCTGTTCACCTAGCC-G--TCT----G-TTTGTCACAA--AATCT-CGTG-AAC
gi|5 : AC-AGGAGGATC----CCAATCGTT-------------------GGATCTA-GAGGG-TGGG--GGG-TTTAAAAA-TAGCTTCATGAACA-TTTTCC-A-CATGA-GTATCGGATGACCTTGA---TATGTA---------ATTATCATTCAT-GATGTCTACATTGTTCTGACCAGAGGATCTAA-TATTTTC
gi|50 : CAGGACAGGAGGGTCCAATTGTTATCCAAAAAAAAAGTTATAG-CGATCTAAGAGgatataatctgaagagtgttttatcagttctttcatgtacaagggtatattcacttacctactggttcattcacatagcagttcttattcttgtatcatatcacaataat
gi|51 : TG---T------------G--------CTTC------------CTG--TCT----G-TCTGTCACAA--AATCT-TACC-AACG----G---TTCTCCT
gi|56 : --GG-GAGACAT--TG-------TTT--T-TGTACCTCCTG---T------------C--------CATC------------T-G--TCT----C-CCTGcgtataca
gi|57 : --GG-GAGACAT--TG-------TTT--T-TGTACCTCCTG---T------------C--------CATC------------T-G--TCT----C-CCTG
gi|6 : TCTCCTTATATG----AGCTTTAATTC-AATTAA-AC-T-GAAACTTTTGTACA-ATGGCTT----ATTTGCCCATTTGTAGCATGTGGCATTATCGTCAGGAC-AGG-GGATC----CAAATCATTGTT-CCTAAAAGTTATGATAAATATA-----------------TGT-AA----------------ATCCCTCATATTATGGCTTATGGAATAAACTTGAAACTTT-TACAGTGCTTCA-TGCCAT--GCAGCGGTGC-CCTTGTCAGGA-AGGGGGA
gi|8 : tatatacaCAAGT--ATTTATGTCTCC-----CATCTTCCATTTAG--GA-ACGACAT--AG-------TTT--T-TCTA------GAATT------------C--------CGT---------------G--TCT----GTTCTGTT-CAACCAATCTCCGTG--ACGGTTTC---TCCTCCTC-TATGATCTCCACTT---TCAGGATAG-CT-T-GAAACTTTGGTACAGATG-CTT----CATT
gi|9 : ttaGATC----T-AA-CATT-TT-CCTACAGTTTACAGTGGTCCCAAGAAGAGT
35 sequences could not be aligned to this reference sequence:
Unaligned ( gi|7 ): ATGATGTTGACATTGTTTTGACCAGAGATCGAATATTGTCCTACAATTTATACTAGACCAAAGAAGAGTGTTATAGCTTTTCTCATGTATAAGGGCAATGCCATATGTTCACTTTCTTACTGATACTTCAGCATAAGTCATTATTTTTGTATCATATGCAAATGA
Unaligned ( gi|11 ): GATATTCACATTATTTTAATTGCGGTTCTAATATTCTCGTAAAATTTACAATGGATCAAAAGGGAGTGCTGTACGCCTCTTTTCATGTATATGGGTAAGTTCAATTTATACTGCTACTTCAGCATAGCAGTTGTTTTTGTA
Unaligned ( gi|12 ): GATGATGTTGACATTGTTTTGACCAGAGATCTAATATTGTCCTACAATTTACATTAGATCAAAGAAGAGTGTTATAGCTTTTTTCATGTATAAGGTAATGTTCAATTTCTAACTGATACTTCAACATAACAGTCATTAT
Unaligned ( gi|13 ): TATGCACATTGTTCTCTAAAGGATATGAAAATTTCCCACAATTTACAGTGGAGTGTTTTAGAGCTATTTCGTGTGCAATATTGGGTATTTGAACAACATAACAATTCTTTTTTATATCATATACAACAATGAGA
Unaligned ( gi|15 ): AGAAAGTGTCATAGTGTTTTTTTTTTCATGTACAAGAATATTATTCATTCACGTACAAGATATATATGTTCACTTTCCTACTGGTACTTCAGCACAACAGTCATTGTATCATT
Unaligned ( gi|16 ): TAGTGTTTTATAGCTTTTTTTTTTAATGAAGAAAGGTAAGTTTACTTACCTAAGTGGTACTTCAGCATAACAGTCATTATTTTCGTATCATAAACAACGATGGCATT
Unaligned ( gi|17 ): TCAAACAAAAGTGTTTCATCGCTTCTTCATGTAATTAGTTATGTCCAATGTTTCTACTGACACTTCAATATAACAGTCATTATTTTTGTAACATGGCACCAACAT
Unaligned ( gi|18 ): GCTTTATAGCCTTTCTCATGTTGAAAAGTATATTCACTTTCCTACAGGTACAGGTACTTCAGCACACCAGTTGTTATTTTTGTATCATATACATGTAACAA
Unaligned ( gi|20 ): AATGTTTTATAAAATACTCTTTTTTTATGCACAAGGGTATGTTCACTTACTTACTGGTATATCTATATCATTTATTCTTATTAAATCCAACCATGACAT
Unaligned ( gi|21 ): TTATAGCTTTTTTTCATGTACAAGGGTATTTTCTTTTTTCTACTGGTACTTTAGCATAACAGTAACTGTATTTATTTTTTGTATCATATACAACGACA
Unaligned ( gi|22 ): TTATGGCACCGTTGGCATTAAAACTAGGGATATAACATTCCCCTACGAATTACAGTAGACCAACGAGTTGCCCTCTGTAGCTTTCTTCATGTGCAAGG
Unaligned ( gi|23 ): ACACAATTTCAGTGGATAAAGAGAAGAGTTTTCACATACAAGTGTATGCTCACTTTCCTACTAGTACTTCAGCATAACCGTCAGTATACAACAATA
Unaligned ( gi|25 ): TAGCTTTTTCCATGTACAAGGGTAAGTCCACTTTCCTACTGGTACTTAGCAATATTAACTGTCATTATTTTGTATCATACACATCAATGACATT
Unaligned ( gi|26 ): ATAGCTTTTGTTCCTGTATAAGGTTATATTCACTTTCCTACTGGTACTTTAGCATCATAGTCATTAGTTTGGTGTCATACACAACAATGACATT
Unaligned ( gi|27 ): ATGTTCACATTGTTCGAACTATAGTCAAGAGATATTTTTTCTACAATATACAGTGGACCAAAGTTTTTTGTAGCTTTTTTCATGCGCAAGG
Unaligned ( gi|29 ): TATAGTTTTTTCATGTATAAGGGTATGTTCACTTTCTTACTGATACTTCAGCATAACAGTCATTATTTTTGTATCATATGCAAATGA
Unaligned ( gi|31 ): CTTTTTCATGTATAAGGATATGCTCACTTTCCTATACTTCAGCATAACATTTACCGGTATCATTACTGTATCATATACAACAATAT
Unaligned ( gi|32 ): TGAACTACGGATATAATAGTTTCCTACAATTTACAATGGACCAAAGAGGAGTACGTGTTTTGTAGTTTTTCTCATGTGCAAGG
Unaligned ( gi|33 ): TAGCTTCTCATGCACAAGAATATGGTCACTTTCGTATTGGTACATCAGCATAATAACAGTCATTATTTTTGTATCATAATGC
Unaligned ( gi|35 ): GTAGCTCTTTATGTACAAATGTATGTTCATTTTCCCACTGGCCCTTAGCATAACAGTCATTGATATGTATCATACACGA
Unaligned ( gi|36 ): GTAGCTTTGTTCATGAACAAAGGCATGTTCACTTTCCAACTGGAACTTTAAGCATTTTGTATCATGTACAGCAATGTC
Unaligned ( gi|37 ): ATGTACAGGGGCATGTTCACTTTCCTACTGGTACATCATATTACTTCTGCACAATGGTCATCATTTTTGTATCATG
Unaligned ( gi|38 ): GTTATGTTCACTTTCTTGACTCATCTTCAGCATACAATCATTATTTTTGTATTATATGCAAAAACGAAAT
Unaligned ( gi|39 ): AGGTATGTTCACTTTCCCTATAAGTACATCAGTATTGTTCATTAGGTTTTGTATCGTATACAGCAATGT
Unaligned ( gi|40 ): TTTTTCATGTACAATTCAACGTTCACTTTCCTACTGGTACTTCAGCATAACAGTCATTATATATGCAT
Unaligned ( gi|42 ): GTTATACCTTTTCATGCATATAAAGGGTATGTTCACTTTCTTACTGATACTTCACTTCAGCATAA
Unaligned ( gi|43 ): ATAGTTTTGTTCATGCATCAGGGTATATTTAATTTCTTACTGTTACTTCAGCGTAAAAGTAATTT
Unaligned ( gi|45 ): CTTTTTTTTCATGTACGAGGGTATCTTCGTTTTCCTACTGGTACTTCAGCATAACAGTCATTA
Unaligned ( gi|47 ): ATGTACAGAGATATGTTCACTTTCCTACTTCAGCCTAACAGTCATTGACATTAGT
Unaligned ( gi|48 ): AGTAGTATTTCAGCACTACATTCATTATTTTTGTATCATATACAACAATGACATT
Unaligned ( gi|52 ): TTTGATGATGTTCACATTGTTCTAACCAAGGATCTAATATTTTCGTACAATTT
Unaligned ( gi|53 ): GTCATAGCTCTAATATTTTCCTACAATTTACATAATAGATCAAAGAAGAGTGT
Unaligned ( gi|54 ): ACAATGGACCAAGGAGGAGTGCTTTGTAGCTTCTTTCAAATGTGTAGGG
Unaligned ( gi|55 ): TACAATGGACCAAAGAGGAGTGTTTTGTAGCTATTTTCATATGCAAGG
Unaligned ( gi|58 ): ATATTTAGTATTATTGTATCACATACAATAATGG
Alignments
lowQualScore : 11 11111111 111 111 3333333333333333333333333333333333333333333333 11111111 11 111111111 111 1 1 1111 1111111 11 11 1111 1 11 1 11 11 1 44444444444444 22222 11
lowQualScore : 1 33 1 22222222 000 33 000 999999999999 33 2 3333333333333333333333333333333333333333333333 555555 33 3 3 55555555 00 999999999 222 66 4 0 5 2 0 5 5 0000 5 6 6 6 6 5 0 9999999 2 4 4 99 11 2 4444 1 3 1 99 6 6 3 6 1 6 6 66 0 8 5 77 0 1 3 0 0 77 0 1 0 8 1 3 5555 3 3 7 88 1 5 88 88 1 2 5 1 00000000000000 1 1 55555 1 66
lowQualScore : . .. . ........ ... .. ... ............ .. . .............................................. ...... .. . . ........ .. ......... ... .. . . . . . . . .... . . . . . . . ....... . . . .. .. . .... . . . .. . . . . . . . .. . . . .. . . . . . .. . . . . . . .... . . . .. . . .. .. . . . . .............. . . ..... . ..
lowQualScore : 0 88 0 99999999 000 99 555 999999999999 77 7 6666666666666666666666666666666666666666666666 666666 99 1 1 11111111 88 000000000 000 11 4 0 0 5 0 0 0 6666 7 7 7 7 3 7 1 3333333 7 4 4 44 99 0 6666 1 6 9 22 7 7 5 7 0 7 4 88 8 0 0 00 8 4 2 6 8 00 8 0 8 8 0 2 3333 7 3 3 33 0 5 55 55 0 5 5 0 00000000000000 0 0 55555 0 55
consensus : NTGCANCTCAAAT--ANTTATGTCTCC-----CCTCTTCCA---GG--GG-AAGACAT--TG-------TTT--T-TGTACTTTCTG---T------------C--------CGTC------------C-G--TCT----G-TCTGTCACAA--AATCT-TGTG-AACG----C---TTCTCCTT-TATG----CGGCTTA--TC-GGATAG-AC-T-GAAACTTT-GTACA-ATG-CTT----CATTGCC-ATTTGTAG-ATGTG-CAT-ATTGTCGGGAC-AGGAGGATC----C-AATCATT-TT-CCTANAAGTTACGATGGATCTAAGAGGGGTGGG--GGG-TGT-AAAA-TAGCTT-GTGAACACTTCTCCTA-TATGACTTATCGGATAGACTTGAAACTTTGTACAATGCTTCATTGCCATTCGCAGATGTGCATNTTGTCNGGACAGGAGGATCCAATTATTTTCCTT-AAGTTATGGTAGATCTAAGAGGG-GTAGAGAATGTAAA--AGCCTNTAGAACACTTATCTACTACNTGGCCTACCGGATAGACGCGAGACTTTGTNCAATGCTTTAATANCATTTAATGATGTNCACATTNTCGGGGCAGGAGGGTCCAATTGTTATCCAAAANAAAAGTTNTAGANGATCTAAGAGGTGTGGAGGATGTAAACGTTTCCTATATGGCTTATAGCCTAGCCTTGAAAGTTTGTGTACCAGTCCTGTTTTGTGTTGCATGCAACAATGACAT
Reference ( family-883 ) : NTGCANCTCAAAT--ANTTATGTCTCC-----CCTCTTCCA---GG--GG-AAGACAT--TG-------TTT--T-TGTACTTTCTG---T------------C--------CGTC------------C-G--TCT----G-TCTGTCACAA--AATCT-TGTG-AACG----C---TTCTCCTT-TATG----CGGCTTA--TC-GGATAG-AC-T-GAAACTTT-GTACA-ATG-CTT----CATTGCC-ATTTGTAG-ATGTG-CAT-ATTGTCGGGAC-AGGAGGATC----C-AATCATT-TT-CCTAAAAGTTACGGTGGATCTAAGAGGGGTGGG--GGG-TGT-AAAA-TAGCTT-GTGAACACTTCTCCTA-TATGACTTATCGGATAGACTTGAAACTTTGTACAATGCTTCATTGCCATTCGCAGATGTGCATNTTGTCNGGACAGGAGGATCCAATTATTTTCCTT-AAGTTATGGTAGATCTAAGAGGG-GTAGAGAATGTAAA--AGCCTNTAGAACACTTATCTACTACNTGGCCTACCGGATAGACGCGAGACTTTGTNCAATGCTTTAATANCATTTAATGATGTNCACATTNTCGGGGCAGGAGGGTCCAATTGTTATCCAAAANAAAAGTTNTAGANGATCTAAGAGGTGTGGAGGATGTAAACGTTTCCTATATGGCTTATAGCCTAGCCTTGAAAGTTTGTGTACCAGTCCTGTTTTGTGTTGCATGCAACAATGACAT
gi|1 : TGCATTTCAAAT--ATTTATTTCTCG-----CCTCTTCCA---GG--GG-AAGACAT--TG-------TTT--T-TGTGCTTACTG---T------------C--------CATC------------C-G--TTT----G-TCTGTCACAA--AATCT-TGTA-AACG----C---TTCTCCTTGTATA----CAGCTTA--TC-GGATAG-AA-T-GTAACTTT-GTGCA-ATG-CTT----CATTGTC-AGTTGCAG-AAGTG-AAT-ATTTCCTGGCC-AGGAGGATA----C-AATTCTT-TT-CCTTACAGTAAAGATGGATCTAAGAGGGATGGA--AGG-TGT-AAAAATAGCTT-GTGAACACTTCCCCTA-TATGACTTATCAGATAGACTTGAAACTTTGTACAATGCTTCATTGCTATTTGTAGATGTGCATATTGTCTGGACAGGAGAAATCACTTATTTTCTAT-ACATTATGATGGATCTAAGAGGATGTAAAAAA---AAA--AACCTTTAAAACATTTATC--CTATTTGGCCTATCAGATAGACTTGAAAC-TTGTTCAATGCTT-----GCA------GATGTGCATATTCTCGGGGCAGAAGGATCCAATTGTTATCC----TAAAAGTTTTAGAGGATCTAAGAGGTGTGGAGGATGTAAACGTTTCCTATATGGCTTATAGCCTAGCCTTGAAAGTTTGTGTACCAGTCCTGTTTTGTGTTGCATGCAACAATGACAT
gi|10 : tTTATGTCTCC-----CCTCTTCCAT--GGGTGG-CAAACATA-CG--------TT--T-TGTACTTTCTG---T------------A--------TGTT------------C-AGTTCT----A-CCTGTCAC-A--AATCT-TGTGAAACGGGGTC---TCCTCCTG-TATT----TGA---A--T----ATAGAAT-T-GAAAAATT-TTACA-GTG-CTTACAACATTGCC-A
gi|14 : TCCA---CG--GG---GATAT--TGACAAGAGTTT--T-TGTACTTTCTG---G------------C--------C---------------------------G-TCTGTCACAA--AATC--TGTG-AAAC----C---TTCTCC---TAC-----CAGTTT---TC-AAATAG-CCTT-GAAA-TTT-GTA-G-ATG-----------TGCC-ATT
gi|19 : TGCAACTTAAATTAAATTATGTC--------CCTCTTCCA---GG--GT---GACAT--T---------TT--T-TCTACTTC--G---T------------C---------GTC------------C-A--TCT----G-TCTGTCA--------CT-TG------------------TCCCC-TATA----CAGTTTG--TC-GGATAG-at
gi|2 : ATAT-AC-TTAAAACTTT-GTGCA-ATG-TTT----CATTGCC-ATTTATTG-AAGTG-CAT-AATGCTGGAAC-AGGAGGATT----C-AATCATT-TTACTTTTAAGTTACAGAGGATCTAAGAGGGGTGGGATGGGCTGT-TAAA-TATATT-GTGAACACTT---CTA-TATGACTTATCAAAGAGACTTATAACTTTGCACAATGCTTTATTGCCAGTTGCAGAAGTGTATTTTGTCTGGACAGGAGGATCCAATCATTTTCCTTAAAGTTATGGTAGATCTAAGAGGG-ATAGAGTGTGTAAAATAGCCTGT-GAACACT--TCTACTACATGGCTTACTGAATAAATGCGAGACTTTGTACAATACTTTAATATCATTTAATGATGTTCACATTAT
gi|24 : -ATGTT-CAT-ATTGTTTGAACTAAGGGTAT--------ACTATT-TT-CGTAAGAGTTAAAACGGACCAAGGAGGAGTGtctaaccaagga
gi|28 : G--GG-GAGACAT--TG-------TTT--T-TGTACCCTCTG---T------------C--------CATCAG----------T-G--TCT----C-CCCGTCtttagtagctttttttcgtgtggaaagg
gi|3 : gtaatggattatatcgagtaccaatttccaacccttaatatCTCTTCCA---GG--GC-A-GACATATTG-------TTTAATATGTACTTTCTG---T------------C--------TATC------------C-A--TCT----G-AC----ACAA--AG-CT-GGTG-AAGA----C---TTTTT-TT-TATA----CGGCTTA--TC-AGAGAG-AC-T-----------------TG-CTT----CATTGCC-ATTTGTAG-ATGTG-CAT-ATTGTTAGAAC-AGGAGGATTCATGC-AGTTATT-TT-CCT-CAAGTTATGGTGGATCTAAGAGGGGTGGG--AGA-TAT-TATA-TAGTTT-GTGAATATAT---CTA-TTTGGGTTATTGGATG-----GAAACTATGTATAATGCTGCATTGCTAT---CACATGTACAT-TTGTCAGGACAGAGGGTTCCAATTATTTTCCTT-AA--------AGATCTAAGAGGG-GTGGAGAATGTAAA--A
gi|30 : atgatgctcaacacttgcctttC-----CCTCTTCCA---AT--GG-AA-ACAA--TG-------TTT--G-TGTACTTTCTG---T------------CAGTCAGTTCGTT------------C-G--TCT----G-TCTGGCTCAA--GACCT-TGTA-AAAG----C---TTCTCCt
gi|32 : GGATA----T-AAT-AGT-TT-CCTACAATTTACAATGGACCAAAGAGGAGT
gi|34 : tgaactacTTATGTCTCT-----CCTCTTCCA---GG--GGTAGGATCT--CA-------GTT--A-TGTGCTTTCTG---C------------C--------TGTC------------------CT----G-TCTGTCACTA--TATCT-TACG-AACG----acgtgttttgtagtttttctcatgtgcaagg
gi|4 : AC--AATTATGTCTCCGGAACTCTGTTCTA---GA--GG-GGGACAT--TG-------TTT--T-TGTACCTTCTG---TACATCGGTCTGTC--------TGTC------------C-A--TCT----G-TCAGTCACAA--AATCT-CGTG-AACG----CGTCTCCTCCTT-TATG----C--CTTA--TC-AGATAG-ACAT-GAAACTTG-GTACA-ATA-CTT----CATTTCC-GTTTGTAG-ATATG-CAC-ATTGTCAGGAC-AGGAGAATC----C-AATTATT-TT-CCTAAA--T--CGAAG------AGAGGGATGGA--GGA-TGT-AAAA-TAGCTT-
gi|41 : tataatgcatataagtattgtCTCCTCCA---GG--G--ATTACAT--T---------TT--T-TGTACTTCCTG---T------------C--------------------------A--TTT--------TGTCACAC--AATCT-TCTG-ATCG----C---TTCTCCa
gi|44 : T--TG-------TTT--T-CATACTTTCTG---T------------C--------TGTC------------A-G--GCTTTCAG-TCTGTTTCAA--AATCT-TGTG-AATG----C---TCCTCC
gi|46 : TATGTC--C-----CCTTCCACA---GG--AG-AAGACAT--TC-------ATT--T-TGTACTTGCTG--------------------------GT-------------C-A--TCT----G-TCTGTCACAA--A
gi|49 : TACTTTCTG---T------------C--------CGTCTGTTCACCTAGCC-G--TCT----G-TTTGTCACAA--AATCT-CGTG-AAC
gi|5 : AC-AGGAGGATC----CCAATCGTT-------------------GGATCTA-GAGGG-TGGG--GGG-TTTAAAAA-TAGCTTCATGAACA-TTTTCC-A-CATGA-GTATCGGATGACCTTGA---TATGTA---------ATTATCATTCAT-GATGTCTACATTGTTCTGACCAGAGGATCTAA-TATTTTC
gi|50 : CAGGACAGGAGGGTCCAATTGTTATCCAAAAAAAAAGTTATAG-CGATCTAAGAGgatataatctgaagagtgttttatcagttctttcatgtacaagggtatattcacttacctactggttcattcacatagcagttcttattcttgtatcatatcacaataat
gi|51 : TG---T------------G--------CTTC------------CTG--TCT----G-TCTGTCACAA--AATCT-TACC-AACG----G---TTCTCCT
gi|56 : --GG-GAGACAT--TG-------TTT--T-TGTACCTCCTG---T------------C--------CATC------------T-G--TCT----C-CCTGcgtataca
gi|57 : --GG-GAGACAT--TG-------TTT--T-TGTACCTCCTG---T------------C--------CATC------------T-G--TCT----C-CCTG
gi|6 : TCTCCTTATATG----AGCTTTAATTC-AATTAA-AC-T-GAAACTTTTGTACA-ATGGCTT----ATTTGCCCATTTGTAGCATGTGGCATTATCGTCAGGAC-AGG-GGATC----CAAATCATTGTT-CCTAAAAGTTATGATAAATATA-----------------TGT-AA----------------ATCCCTCATATTATGGCTTATGGAATAAACTTGAAACTTT-TACAGTGCTTCA-TGCCAT--GCAGCGGTGC-CCTTGTCAGGA-AGGGGGA
gi|8 : tatatacaCAAGT--ATTTATGTCTCC-----CATCTTCCATTTAG--GA-ACGACAT--AG-------TTT--T-TCTA------GAATT------------C--------CGT---------------G--TCT----GTTCTGTT-CAACCAATCTCCGTG--ACGGTTTC---TCCTCCTC-TATGATCTCCACTT---TCAGGATAG-CT-T-GAAACTTTGGTACAGATG-CTT----CATT
gi|9 : ttaGATC----T-AA-CATT-TT-CCTACAGTTTACAGTGGTCCCAAGAAGAGT
34 sequences could not be aligned to this reference sequence:
Unaligned ( gi|7 ): ATGATGTTGACATTGTTTTGACCAGAGATCGAATATTGTCCTACAATTTATACTAGACCAAAGAAGAGTGTTATAGCTTTTCTCATGTATAAGGGCAATGCCATATGTTCACTTTCTTACTGATACTTCAGCATAAGTCATTATTTTTGTATCATATGCAAATGA
Unaligned ( gi|11 ): GATATTCACATTATTTTAATTGCGGTTCTAATATTCTCGTAAAATTTACAATGGATCAAAAGGGAGTGCTGTACGCCTCTTTTCATGTATATGGGTAAGTTCAATTTATACTGCTACTTCAGCATAGCAGTTGTTTTTGTA
Unaligned ( gi|12 ): GATGATGTTGACATTGTTTTGACCAGAGATCTAATATTGTCCTACAATTTACATTAGATCAAAGAAGAGTGTTATAGCTTTTTTCATGTATAAGGTAATGTTCAATTTCTAACTGATACTTCAACATAACAGTCATTAT
Unaligned ( gi|13 ): TATGCACATTGTTCTCTAAAGGATATGAAAATTTCCCACAATTTACAGTGGAGTGTTTTAGAGCTATTTCGTGTGCAATATTGGGTATTTGAACAACATAACAATTCTTTTTTATATCATATACAACAATGAGA
Unaligned ( gi|15 ): AGAAAGTGTCATAGTGTTTTTTTTTTCATGTACAAGAATATTATTCATTCACGTACAAGATATATATGTTCACTTTCCTACTGGTACTTCAGCACAACAGTCATTGTATCATT
Unaligned ( gi|16 ): TAGTGTTTTATAGCTTTTTTTTTTAATGAAGAAAGGTAAGTTTACTTACCTAAGTGGTACTTCAGCATAACAGTCATTATTTTCGTATCATAAACAACGATGGCATT
Unaligned ( gi|17 ): TCAAACAAAAGTGTTTCATCGCTTCTTCATGTAATTAGTTATGTCCAATGTTTCTACTGACACTTCAATATAACAGTCATTATTTTTGTAACATGGCACCAACAT
Unaligned ( gi|18 ): GCTTTATAGCCTTTCTCATGTTGAAAAGTATATTCACTTTCCTACAGGTACAGGTACTTCAGCACACCAGTTGTTATTTTTGTATCATATACATGTAACAA
Unaligned ( gi|20 ): AATGTTTTATAAAATACTCTTTTTTTATGCACAAGGGTATGTTCACTTACTTACTGGTATATCTATATCATTTATTCTTATTAAATCCAACCATGACAT
Unaligned ( gi|21 ): TTATAGCTTTTTTTCATGTACAAGGGTATTTTCTTTTTTCTACTGGTACTTTAGCATAACAGTAACTGTATTTATTTTTTGTATCATATACAACGACA
Unaligned ( gi|22 ): TTATGGCACCGTTGGCATTAAAACTAGGGATATAACATTCCCCTACGAATTACAGTAGACCAACGAGTTGCCCTCTGTAGCTTTCTTCATGTGCAAGG
Unaligned ( gi|23 ): ACACAATTTCAGTGGATAAAGAGAAGAGTTTTCACATACAAGTGTATGCTCACTTTCCTACTAGTACTTCAGCATAACCGTCAGTATACAACAATA
Unaligned ( gi|25 ): TAGCTTTTTCCATGTACAAGGGTAAGTCCACTTTCCTACTGGTACTTAGCAATATTAACTGTCATTATTTTGTATCATACACATCAATGACATT
Unaligned ( gi|26 ): ATAGCTTTTGTTCCTGTATAAGGTTATATTCACTTTCCTACTGGTACTTTAGCATCATAGTCATTAGTTTGGTGTCATACACAACAATGACATT
Unaligned ( gi|27 ): ATGTTCACATTGTTCGAACTATAGTCAAGAGATATTTTTTCTACAATATACAGTGGACCAAAGTTTTTTGTAGCTTTTTTCATGCGCAAGG
Unaligned ( gi|29 ): TATAGTTTTTTCATGTATAAGGGTATGTTCACTTTCTTACTGATACTTCAGCATAACAGTCATTATTTTTGTATCATATGCAAATGA
Unaligned ( gi|31 ): CTTTTTCATGTATAAGGATATGCTCACTTTCCTATACTTCAGCATAACATTTACCGGTATCATTACTGTATCATATACAACAATAT
Unaligned ( gi|33 ): TAGCTTCTCATGCACAAGAATATGGTCACTTTCGTATTGGTACATCAGCATAATAACAGTCATTATTTTTGTATCATAATGC
Unaligned ( gi|35 ): GTAGCTCTTTATGTACAAATGTATGTTCATTTTCCCACTGGCCCTTAGCATAACAGTCATTGATATGTATCATACACGA
Unaligned ( gi|36 ): GTAGCTTTGTTCATGAACAAAGGCATGTTCACTTTCCAACTGGAACTTTAAGCATTTTGTATCATGTACAGCAATGTC
Unaligned ( gi|37 ): ATGTACAGGGGCATGTTCACTTTCCTACTGGTACATCATATTACTTCTGCACAATGGTCATCATTTTTGTATCATG
Unaligned ( gi|38 ): GTTATGTTCACTTTCTTGACTCATCTTCAGCATACAATCATTATTTTTGTATTATATGCAAAAACGAAAT
Unaligned ( gi|39 ): AGGTATGTTCACTTTCCCTATAAGTACATCAGTATTGTTCATTAGGTTTTGTATCGTATACAGCAATGT
Unaligned ( gi|40 ): TTTTTCATGTACAATTCAACGTTCACTTTCCTACTGGTACTTCAGCATAACAGTCATTATATATGCAT
Unaligned ( gi|42 ): GTTATACCTTTTCATGCATATAAAGGGTATGTTCACTTTCTTACTGATACTTCACTTCAGCATAA
Unaligned ( gi|43 ): ATAGTTTTGTTCATGCATCAGGGTATATTTAATTTCTTACTGTTACTTCAGCGTAAAAGTAATTT
Unaligned ( gi|45 ): CTTTTTTTTCATGTACGAGGGTATCTTCGTTTTCCTACTGGTACTTCAGCATAACAGTCATTA
Unaligned ( gi|47 ): ATGTACAGAGATATGTTCACTTTCCTACTTCAGCCTAACAGTCATTGACATTAGT
Unaligned ( gi|48 ): AGTAGTATTTCAGCACTACATTCATTATTTTTGTATCATATACAACAATGACATT
Unaligned ( gi|52 ): TTTGATGATGTTCACATTGTTCTAACCAAGGATCTAATATTTTCGTACAATTT
Unaligned ( gi|53 ): GTCATAGCTCTAATATTTTCCTACAATTTACATAATAGATCAAAGAAGAGTGT
Unaligned ( gi|54 ): ACAATGGACCAAGGAGGAGTGCTTTGTAGCTTCTTTCAAATGTGTAGGG
Unaligned ( gi|55 ): TACAATGGACCAAAGAGGAGTGTTTTGTAGCTATTTTCATATGCAAGG
Unaligned ( gi|58 ): ATATTTAGTATTATTGTATCACATACAATAATGG
Alignments
lowQualScore : 11 11111111 111 111 3333333333333333333333333333333333333333333333 11111111 11 111111111 111 1 1 1111 1111111 1 11 11 1111 1 11 1 11 11 1 44444444444444 22222 11
lowQualScore : 1 33 1 22222222 000 33 000 999999999999 33 2 3333333333333333333333333333333333333333333333 555555 33 3 3 55555555 00 999999999 222 66 4 0 5 2 0 5 5 0000 5 5 5 5 8 4 1 2222222 4 3 3 22 5 6666 6 0 99 6 6 3 6 1 6 6 66 0 8 5 77 0 1 3 0 0 77 0 1 0 8 1 3 5555 3 3 7 88 1 5 88 88 1 2 5 1 00000000000000 1 1 55555 1 66
lowQualScore : . .. . ........ ... .. ... ............ .. . .............................................. ...... .. . . ........ .. ......... ... .. . . . . . . . .... . . . . . . . ....... . . . .. . .... . . .. . . . . . . . .. . . . .. . . . . . .. . . . . . . .... . . . .. . . .. .. . . . . .............. . . ..... . ..
lowQualScore : 0 88 0 99999999 000 99 555 999999999999 77 7 6666666666666666666666666666666666666666666666 666666 99 1 1 11111111 88 000000000 000 11 4 0 0 5 0 0 0 6666 7 0 0 0 5 4 8 8888888 2 1 1 77 4 2222 0 5 22 7 7 5 7 0 7 4 88 8 0 0 00 8 4 2 6 8 00 8 0 8 8 0 2 3333 7 3 3 33 0 5 55 55 0 5 5 0 00000000000000 0 0 55555 0 55
consensus : NTGCANCTCAAAT--ANTTATGTCTCC-----CCTCTTCCA---GG--GG-AAGACAT--TG-------TTT--T-TGTACTTTCTG---T------------C--------CGTC------------C-G--TCT----G-TCTGTCACAA--AATCT-TGTG-AACG----C---TTCTCCTT-TATG----CGGCTTA--TC-GGATAG-AC-T-GAAACTTT-GTACA-ATG-CTT----CATTGCC-ATTTGTAG-ATGTG-CAT-ATTGTTNGGAC-AGGAGGATC----C-AATCATT-TT-CCTACAATTTAC--GATGGATCNAAGAGGAGTGGG--GGG-TGT-AAAA-TAGCTT-GTGAACACTTCTCCTA-TATGACTTATCGGATAGACTTGAAACTTTGTACAATGCTTCATTGCCATTCGCAGATGTGCATNTTGTCNGGACAGGAGGATCCAATTATTTTCCTT-AAGTTATGGTAGATCTAAGAGGG-GTAGAGAATGTAAA--AGCCTNTAGAACACTTATCTACTACNTGGCCTACCGGATAGACGCGAGACTTTGTNCAATGCTTTAATANCATTTAATGATGTNCACATTNTCGGGGCAGGAGGGTCCAATTGTTATCCAAAANAAAAGTTNTAGANGATCTAAGAGGTGTGGAGGATGTAAACGTTTCCTATATGGCTTATAGCCTAGCCTTGAAAGTTTGTGTACCAGTCCTGTTTTGTGTTGCATGCAACAATGACAT
Reference ( family-883 ) : NTGCANCTCAAAT--ANTTATGTCTCC-----CCTCTTCCA---GG--GG-AAGACAT--TG-------TTT--T-TGTACTTTCTG---T------------C--------CGTC------------C-G--TCT----G-TCTGTCACAA--AATCT-TGTG-AACG----C---TTCTCCTT-TATG----CGGCTTA--TC-GGATAG-AC-T-GAAACTTT-GTACA-ATG-CTT----CATTGCC-ATTTGTAG-ATGTG-CAT-ATTGTCGGGAC-AGGAGGATC----C-AATCATT-TT-CCTANAAGTTAC--GATGGATCTAAGAGGGGTGGG--GGG-TGT-AAAA-TAGCTT-GTGAACACTTCTCCTA-TATGACTTATCGGATAGACTTGAAACTTTGTACAATGCTTCATTGCCATTCGCAGATGTGCATNTTGTCNGGACAGGAGGATCCAATTATTTTCCTT-AAGTTATGGTAGATCTAAGAGGG-GTAGAGAATGTAAA--AGCCTNTAGAACACTTATCTACTACNTGGCCTACCGGATAGACGCGAGACTTTGTNCAATGCTTTAATANCATTTAATGATGTNCACATTNTCGGGGCAGGAGGGTCCAATTGTTATCCAAAANAAAAGTTNTAGANGATCTAAGAGGTGTGGAGGATGTAAACGTTTCCTATATGGCTTATAGCCTAGCCTTGAAAGTTTGTGTACCAGTCCTGTTTTGTGTTGCATGCAACAATGACAT
gi|1 : TGCATTTCAAAT--ATTTATTTCTCG-----CCTCTTCCA---GG--GG-AAGACAT--TG-------TTT--T-TGTGCTTACTG---T------------C--------CATC------------C-G--TTT----G-TCTGTCACAA--AATCT-TGTA-AACG----C---TTCTCCTTGTATA----CAGCTTA--TC-GGATAG-AA-T-GTAACTTT-GTGCA-ATG-CTT----CATTGTC-AGTTGCAG-AAGTG-AAT-ATTTCCTGGCC-AGGAGGATA----C-AATTCTT-TT-CCTTACAGTAAA--GATGGATCTAAGAGGGATGGA--AGG-TGT-AAAAATAGCTT-GTGAACACTTCCCCTA-TATGACTTATCAGATAGACTTGAAACTTTGTACAATGCTTCATTGCTATTTGTAGATGTGCATATTGTCTGGACAGGAGAAATCACTTATTTTCTAT-ACATTATGATGGATCTAAGAGGATGTAAAAAA---AAA--AACCTTTAAAACATTTATC--CTATTTGGCCTATCAGATAGACTTGAAACTT-GTTCAATGCTT-----GCA------GATGTGCATATTCTCGGGGCAGAAGGATCCAATTGTTATCC----TAAAAGTTTTAGAGGATCTAAGAGGTGTGGAGGATGTAAACGTTTCCTATATGGCTTATAGCCTAGCCTTGAAAGTTTGTGTACCAGTCCTGTTTTGTGTTGCATGCAACAATGACAT
gi|10 : tTTATGTCTCC-----CCTCTTCCAT--GGGTGG-CAAACATA-CG--------TT--T-TGTACTTTCTG---T------------A--------TGTT------------C-AGTTCT----A-CCTGTCAC-A--AATCT-TGTGAAACGGGGTC---TCCTCCTG-TATT----TGA---A--T----ATAGAAT-T-GAAAAATT-TTACA-GTG-CTTACAACATTGCC-A
gi|11 : GGTTC----T-AAT-ATT-CT-CGTAAAATTTAC--AATGGATCAAAAGGGAGTG
gi|12 : gatattcacattattttaattgcG-ATGTT-GAC-ATTGTTTTGAC-CAGAG-ATC----T-AAT-ATT-GT-CCTACAATTTAC--ATTAGATCAAAGAAGAGTGctgtacgcctcttttcatgtatatgggtaagttcaatttatactgctacttcagcatagcagttgtttttgta
gi|14 : gatTCCA---CG--GG---GATAT--TGACAAGAGTTT--T-TGTACTTTCTG---G------------C--------C---------------------------G-TCTGTCACAA--AATC--TGTG-AAAC----C---TTCTCC---TAC-----CAGTTT---TC-AAATAG-CCTT-GAAA-TTT-GTA-G-ATG-----------TGCC-ATTttatagcttttttcatgtataaggtaatgttcaatttctaactgatacttcaacataacagtcattat
gi|19 : TGCAACTTAAATTAAATTATGTC--------CCTCTTCCA---GG--GT---GACAT--T---------TT--T-TCTACTTC--G---T------------C---------GTC------------C-A--TCT----G-TCTGTCA--------CT-TG------------------TCCCC-TATA----CAGTTTG--TC-GGATAG-at
gi|2 : ATAT-AC-TTAAAACTTT-GTGCA-ATG-TTT----CATTGCC-ATTTATTG-AAGTG-CAT-AATGCTGGAAC-AGGAGGATT----C-AATCATT-TTACTTTTAAGTTAC--AGAGGATCTAAGAGGGGTGGGATGGGCTGT-TAAA-TATATT-GTGAACACTT---CTA-TATGACTTATCAAAGAGACTTATAACTTTGCACAATGCTTTATTGCCAGTTGCAGAAGTGTATTTTGTCTGGACAGGAGGATCCAATCATTTTCCTTAAAGTTATGGTAGATCTAAGAGGG-ATAGAGTGTGTAAAATAGCCTGT-GAACACT--TCTACTACATGGCTTACTGAATAAATGCGAGACTTTGTACAATACTTTAATATCATTTAATGATGTTCACATTAT
gi|24 : -ATGTT-CAT-ATTGTTTGAACTAAGGGTAT--------ACTATT-TT-CGTAAGAGTTAA--AACGGACCAAGGAGGAGTGtctaaccaagga
gi|28 : G--GG-GAGACAT--TG-------TTT--T-TGTACCCTCTG---T------------C--------CATCAG----------T-G--TCT----C-CCCGTCtttagtagctttttttcgtgtggaaagg
gi|3 : gtaatggattatatcgagtaccaatttccaacccttaatatCTCTTCCA---GG--GC-A-GACATATTG-------TTTAATATGTACTTTCTG---T------------C--------TATC------------C-A--TCT----G-AC----ACAA--AG-CT-GGTG-AAGA----C---TTTTT-TT-TATA----CGGCTTA--TC-AGAGAG-AC-T-----------------TG-CTT----CATTGCC-ATTTGTAG-ATGTG-CAT-ATTGTTAGAAC-AGGAGGATTCATGC-AGTTATT-TT-CCT-CAAGTTAT--GGTGGATCTAAGAGGGGTGGG--AGA-TAT-TATA-TAGTTT-GTGAATATAT---CTA-TTTGGGTTATTGGATG-----GAAACTATGTATAATGCTGCATTGCTAT---CACATGTACAT-TTGTCAGGACAGAGGGTTCCAATTATTTTCCTT-AA--------AGATCTAAGAGGG-GTGGAGAATGTAAA--A
gi|30 : atgatgctcaacacttgcctttC-----CCTCTTCCA---AT--GG-AA-ACAA--TG-------TTT--G-TGTACTTTCTG---T------------CAGTCAGTTCGTT------------C-G--TCT----G-TCTGGCTCAA--GACCT-TGTA-AAAG----C---TTCTCCt
gi|32 : GGATA----T-AAT-AGT-TT-CCTACAATTTAC--AATGGACCAAAGAGGAGT
gi|34 : tgaactacTTATGTCTCT-----CCTCTTCCA---GG--GGTAGGATCT--CA-------GTT--A-TGTGCTTTCTG---C------------C--------TGTC------------------CT----G-TCTGTCACTA--TATCT-TACG-AACG----acgtgttttgtagtttttctcatgtgcaagg
gi|4 : AC--AATTATGTCTCCGGAACTCTGTTCTA---GA--GG-GGGACAT--TG-------TTT--T-TGTACCTTCTG---TACATCGGTCTGTC--------TGTC------------C-A--TCT----G-TCAGTCACAA--AATCT-CGTG-AACG----CGTCTCCTCCTT-TATG----C--CTTA--TC-AGATAG-ACAT-GAAACTTG-GTACA-ATA-CTT----CATTTCC-GTTTGTAG-ATATG-CAC-ATTGTCAGGAC-AGGAGAATC----C-AATTATT-TT-CCTAAA---T-C--GAAG------AGAGGGATGGA--GGA-TGT-AAAA-TAGCTT-
gi|41 : tataatgcatataagtattgtCTCCTCCA---GG--G--ATTACAT--T---------TT--T-TGTACTTCCTG---T------------C--------------------------A--TTT--------TGTCACAC--AATCT-TCTG-ATCG----C---TTCTCCa
gi|44 : T--TG-------TTT--T-CATACTTTCTG---T------------C--------TGTC------------A-G--GCTTTCAG-TCTGTTTCAA--AATCT-TGTG-AATG----C---TCCTCC
gi|46 : TATGTC--C-----CCTTCCACA---GG--AG-AAGACAT--TC-------ATT--T-TGTACTTGCTG--------------------------GT-------------C-A--TCT----G-TCTGTCACAA--A
gi|49 : TACTTTCTG---T------------C--------CGTCTGTTCACCTAGCC-G--TCT----G-TTTGTCACAA--AATCT-CGTG-AAC
gi|5 : AC-AGGAGGATC----CCAATCGTT---------------------GGATCTA-GAGGG-TGGG--GGG-TTTAAAAA-TAGCTTCATGAACA-TTTTCC-A-CATGA-GTATCGGATGACCTTGA---TATGTA---------ATTATCATTCAT-GATGTCTACATTGTTCTGACCAGAGGATCTAA-TATTTTC
gi|50 : CAGGACAGGAGGGTCCAATTGTTATCCAAAAAAAAAGTTATAG-CGATCTAAGAGgatataatctgaagagtgttttatcagttctttcatgtacaagggtatattcacttacctactggttcattcacatagcagttcttattcttgtatcatatcacaataat
gi|51 : TG---T------------G--------CTTC------------CTG--TCT----G-TCTGTCACAA--AATCT-TACC-AACG----G---TTCTCCT
gi|53 : TC----T-AAT-ATT-TT-CCTACAATTTACATAATAGATCAAAGAAGAGTGcgtataca
gi|56 : gtcatagc--GG-GAGACAT--TG-------TTT--T-TGTACCTCCTG---T------------C--------CATC------------T-G--TCT----C-CCTGt
gi|57 : --GG-GAGACAT--TG-------TTT--T-TGTACCTCCTG---T------------C--------CATC------------T-G--TCT----C-CCTG
gi|6 : TCTCCTTATATG----AGCTTTAATTC-AATTAA-AC-T-GAAACTTTTGTACA-ATGGCTT----ATTTGCCCATTTGTAGCATGTGGCATTATCGTCAGGAC-AGG-GGATC----CAAATCATTGTT-CCTAAAAGTTAT--GATAAATATA-----------------TGT-AA----------------ATCCCTCATATTATGGCTTATGGAATAAACTTGAAACTTT-TACAGTGCTTCA-TGCCAT--GCAGCGGTGC-CCTTGTCAGGA-AGGGGGA
gi|7 : tatatacaG-ATGTT-GAC-ATTGTTTTGAC-CAGAG-ATC----G-AAT-ATT-GT-CCTACAATTTAT--ACTAGACCAAAGAAGAGTG
gi|8 : atCAAGT--ATTTATGTCTCC-----CATCTTCCATTTAG--GA-ACGACAT--AG-------TTT--T-TCTA------GAATT------------C--------CGT---------------G--TCT----GTTCTGTT-CAACCAATCTCCGTG--ACGGTTTC---TCCTCCTC-TATGATCTCCACTT---TCAGGATAG-CT-T-GAAACTTTGGTACAGATG-CTT----CATTttatagcttttctcatgtataagggcaatgccatatgttcactttcttactgatacttcagcataagtcattatttttgtatcatatgcaaatga
gi|9 : ttaGATC----T-AA-CATT-TT-CCTACAGTTTAC--AGTGGTCCCAAGAAGAGT
30 sequences could not be aligned to this reference sequence:
Unaligned ( gi|13 ): TATGCACATTGTTCTCTAAAGGATATGAAAATTTCCCACAATTTACAGTGGAGTGTTTTAGAGCTATTTCGTGTGCAATATTGGGTATTTGAACAACATAACAATTCTTTTTTATATCATATACAACAATGAGA
Unaligned ( gi|15 ): AGAAAGTGTCATAGTGTTTTTTTTTTCATGTACAAGAATATTATTCATTCACGTACAAGATATATATGTTCACTTTCCTACTGGTACTTCAGCACAACAGTCATTGTATCATT
Unaligned ( gi|16 ): TAGTGTTTTATAGCTTTTTTTTTTAATGAAGAAAGGTAAGTTTACTTACCTAAGTGGTACTTCAGCATAACAGTCATTATTTTCGTATCATAAACAACGATGGCATT
Unaligned ( gi|17 ): TCAAACAAAAGTGTTTCATCGCTTCTTCATGTAATTAGTTATGTCCAATGTTTCTACTGACACTTCAATATAACAGTCATTATTTTTGTAACATGGCACCAACAT
Unaligned ( gi|18 ): GCTTTATAGCCTTTCTCATGTTGAAAAGTATATTCACTTTCCTACAGGTACAGGTACTTCAGCACACCAGTTGTTATTTTTGTATCATATACATGTAACAA
Unaligned ( gi|20 ): AATGTTTTATAAAATACTCTTTTTTTATGCACAAGGGTATGTTCACTTACTTACTGGTATATCTATATCATTTATTCTTATTAAATCCAACCATGACAT
Unaligned ( gi|21 ): TTATAGCTTTTTTTCATGTACAAGGGTATTTTCTTTTTTCTACTGGTACTTTAGCATAACAGTAACTGTATTTATTTTTTGTATCATATACAACGACA
Unaligned ( gi|22 ): TTATGGCACCGTTGGCATTAAAACTAGGGATATAACATTCCCCTACGAATTACAGTAGACCAACGAGTTGCCCTCTGTAGCTTTCTTCATGTGCAAGG
Unaligned ( gi|23 ): ACACAATTTCAGTGGATAAAGAGAAGAGTTTTCACATACAAGTGTATGCTCACTTTCCTACTAGTACTTCAGCATAACCGTCAGTATACAACAATA
Unaligned ( gi|25 ): TAGCTTTTTCCATGTACAAGGGTAAGTCCACTTTCCTACTGGTACTTAGCAATATTAACTGTCATTATTTTGTATCATACACATCAATGACATT
Unaligned ( gi|26 ): ATAGCTTTTGTTCCTGTATAAGGTTATATTCACTTTCCTACTGGTACTTTAGCATCATAGTCATTAGTTTGGTGTCATACACAACAATGACATT
Unaligned ( gi|27 ): ATGTTCACATTGTTCGAACTATAGTCAAGAGATATTTTTTCTACAATATACAGTGGACCAAAGTTTTTTGTAGCTTTTTTCATGCGCAAGG
Unaligned ( gi|29 ): TATAGTTTTTTCATGTATAAGGGTATGTTCACTTTCTTACTGATACTTCAGCATAACAGTCATTATTTTTGTATCATATGCAAATGA
Unaligned ( gi|31 ): CTTTTTCATGTATAAGGATATGCTCACTTTCCTATACTTCAGCATAACATTTACCGGTATCATTACTGTATCATATACAACAATAT
Unaligned ( gi|33 ): TAGCTTCTCATGCACAAGAATATGGTCACTTTCGTATTGGTACATCAGCATAATAACAGTCATTATTTTTGTATCATAATGC
Unaligned ( gi|35 ): GTAGCTCTTTATGTACAAATGTATGTTCATTTTCCCACTGGCCCTTAGCATAACAGTCATTGATATGTATCATACACGA
Unaligned ( gi|36 ): GTAGCTTTGTTCATGAACAAAGGCATGTTCACTTTCCAACTGGAACTTTAAGCATTTTGTATCATGTACAGCAATGTC
Unaligned ( gi|37 ): ATGTACAGGGGCATGTTCACTTTCCTACTGGTACATCATATTACTTCTGCACAATGGTCATCATTTTTGTATCATG
Unaligned ( gi|38 ): GTTATGTTCACTTTCTTGACTCATCTTCAGCATACAATCATTATTTTTGTATTATATGCAAAAACGAAAT
Unaligned ( gi|39 ): AGGTATGTTCACTTTCCCTATAAGTACATCAGTATTGTTCATTAGGTTTTGTATCGTATACAGCAATGT
Unaligned ( gi|40 ): TTTTTCATGTACAATTCAACGTTCACTTTCCTACTGGTACTTCAGCATAACAGTCATTATATATGCAT
Unaligned ( gi|42 ): GTTATACCTTTTCATGCATATAAAGGGTATGTTCACTTTCTTACTGATACTTCACTTCAGCATAA
Unaligned ( gi|43 ): ATAGTTTTGTTCATGCATCAGGGTATATTTAATTTCTTACTGTTACTTCAGCGTAAAAGTAATTT
Unaligned ( gi|45 ): CTTTTTTTTCATGTACGAGGGTATCTTCGTTTTCCTACTGGTACTTCAGCATAACAGTCATTA
Unaligned ( gi|47 ): ATGTACAGAGATATGTTCACTTTCCTACTTCAGCCTAACAGTCATTGACATTAGT
Unaligned ( gi|48 ): AGTAGTATTTCAGCACTACATTCATTATTTTTGTATCATATACAACAATGACATT
Unaligned ( gi|52 ): TTTGATGATGTTCACATTGTTCTAACCAAGGATCTAATATTTTCGTACAATTT
Unaligned ( gi|54 ): ACAATGGACCAAGGAGGAGTGCTTTGTAGCTTCTTTCAAATGTGTAGGG
Unaligned ( gi|55 ): TACAATGGACCAAAGAGGAGTGTTTTGTAGCTATTTTCATATGCAAGG
Unaligned ( gi|58 ): ATATTTAGTATTATTGTATCACATACAATAATGG
Alignments
lowQualScore : 11 11111111 111 111 3333333333333333333333333333333333333333333333 11111111 11 111111111 111 1 1 1111 11111111 1111111 1 1 2222222 11 1111 1 11 1 11 11 1 44444444444444 22222 11
lowQualScore : 1 33 1 22222222 000 33 000 999999999999 33 2 3333333333333333333333333333333333333333333333 555555 33 3 3 55555555 00 999999999 222 66 4 0 5 2 0 5 5 0000 5 3 77 3 11 77777777 7 1111111 9 2 2 2 1 4444 2 1 99 6 1 3 3 33 6 1111111 8 0 77 1 3 0 0 77 0 1 0 8 1 3 5555 3 3 7 88 1 5 88 88 1 2 5 1 00000000000000 1 1 55555 1 66
lowQualScore : . .. . ........ ... .. ... ............ .. . .............................................. ...... .. . . ........ .. ......... ... .. . . . . . . . .... . . .. . .. ........ . ....... . . . . . .... . . .. . . . . .. . ....... . . .. . . . . .. . . . . . . .... . . . .. . . .. .. . . . . .............. . . ..... . ..
lowQualScore : 0 88 0 99999999 000 99 555 999999999999 77 7 6666666666666666666666666666666666666666666666 666666 99 1 1 11111111 88 000000000 000 11 4 0 0 5 0 0 0 6666 7 6 33 6 44 33333333 2 9999999 3 7 7 7 0 9999 0 2 22 7 0 7 3 55 7 2222222 0 8 00 0 2 6 8 00 8 0 8 8 0 2 3333 7 3 3 33 0 5 55 55 0 5 5 0 00000000000000 0 0 55555 0 55
consensus : NTGCANCTCAAAT--ANTTATGTCTCC-----CCTCTTCCA---GG--GG-AAGACAT--TG-------TTT--T-TGTACTTTCTG---T------------C--------CGTC------------C-G--TCT----G-TCTGTCACAA--AATCT-TGTG-AACG----C---TTCTCCTT-TATG----CGGCTTA--TC-GGATAG-AC-T-GAAACTTT-GTACA-ATG-CTT----CATTGCC-ATTTGTAG-ATGTT-CAC-ATTGTTCGGAC-------AGGAGGATC----C-AAT-ATT-TT-CCT-ACAATTTAC--GATGGATCAAAGAGGAGTGGG--GGG-TGTAAAA-TAGCTT-GTGAACACTTCTCCTA-TATGACTTATCGGATAGACTTGAAACTTTGTACAATGCTTCATTGCCATTCGCAGATGTGCATNTTGTCNGGACAGGAGGATCCAATTATTTTCCTT-AAGTTATGGTAGATCTAAGAGGG-GTAGAGAATGTAAA--AGCCTNTAGAACACTTATCTACTACNTGGCCTACCGGATAGACGCGAGACTTTGTNCAATGCTTTAATANCATTTAATGATGTNCACATTNTCGGGGCAGGAGGGTCCAATTGTTATCCAAAANAAAAGTTNTAGANGATCTAAGAGGTGTGGAGGATGTAAACGTTTCCTATATGGCTTATAGCCTAGCCTTGAAAGTTTGTGTACCAGTCCTGTTTTGTGTTGCATGCAACAATGACAT
Reference ( family-883 ) : NTGCANCTCAAAT--ANTTATGTCTCC-----CCTCTTCCA---GG--GG-AAGACAT--TG-------TTT--T-TGTACTTTCTG---T------------C--------CGTC------------C-G--TCT----G-TCTGTCACAA--AATCT-TGTG-AACG----C---TTCTCCTT-TATG----CGGCTTA--TC-GGATAG-AC-T-GAAACTTT-GTACA-ATG-CTT----CATTGCC-ATTTGTAG-ATGTG-CAT-ATTGTTNGGAC-------AGGAGGATC----C-AATCATT-TT-CCT-ACAATTTAC--GATGGATCNAAGAGGAGTGGG--GGG-TGTAAAA-TAGCTT-GTGAACACTTCTCCTA-TATGACTTATCGGATAGACTTGAAACTTTGTACAATGCTTCATTGCCATTCGCAGATGTGCATNTTGTCNGGACAGGAGGATCCAATTATTTTCCTT-AAGTTATGGTAGATCTAAGAGGG-GTAGAGAATGTAAA--AGCCTNTAGAACACTTATCTACTACNTGGCCTACCGGATAGACGCGAGACTTTGTNCAATGCTTTAATANCATTTAATGATGTNCACATTNTCGGGGCAGGAGGGTCCAATTGTTATCCAAAANAAAAGTTNTAGANGATCTAAGAGGTGTGGAGGATGTAAACGTTTCCTATATGGCTTATAGCCTAGCCTTGAAAGTTTGTGTACCAGTCCTGTTTTGTGTTGCATGCAACAATGACAT
gi|1 : TGCATTTCAAAT--ATTTATTTCTCG-----CCTCTTCCA---GG--GG-AAGACAT--TG-------TTT--T-TGTGCTTACTG---T------------C--------CATC------------C-G--TTT----G-TCTGTCACAA--AATCT-TGTA-AACG----C---TTCTCCTTGTATA----CAGCTTA--TC-GGATAG-AA-T-GTAACTTT-GTGCA-ATG-CTT----CATTGTC-AGTTGCAG-AAGTG-AAT-ATTTCCTGGCC-------AGGAGGATA----C-AATTCTT-TT-CCTTACAGTA-AA--GATGGATCTAAGAGGGATGGA--AGG-TGTAAAAATAGCTT-GTGAACACTTCCCCTA-TATGACTTATCAGATAGACTTGAAACTTTGTACAATGCTTCATTGCTATTTGTAGATGTGCATATTGTCTGGACAGGAGAAATCACTTATTTTCTAT-ACATTATGATGGATCTAAGAGGATGTAAAAAA---AAA--AACCTTTAAAACATTTATC--CTATTTGGCCTATCAGATAGACTTGAAAC-TTGTTCAATGCTT-----GCA------GATGTGCATATTCTCGGGGCAGAAGGATCCAATTGTTATCC----TAAAAGTTTTAGAGGATCTAAGAGGTGTGGAGGATGTAAACGTTTCCTATATGGCTTATAGCCTAGCCTTGAAAGTTTGTGTACCAGTCCTGTTTTGTGTTGCATGCAACAATGACAT
gi|10 : tTTATGTCTCC-----CCTCTTCCAT--GGGTGG-CAAACATA-CG--------TT--T-TGTACTTTCTG---T------------A--------TGTT------------C-AGTTCT----A-CCTGTCAC-A--AATCT-TGTGAAACGGGGTC---TCCTCCTG-TATT----TGA---A--T----ATAGAAT-T-GAAAAATT-TTACA-GTG-CTTACAACATTGCC-A
gi|11 : G-ATATT-CAC-ATTATTTTAAT--------TGCGGTTC----T-AAT-ATT-CT-CGT-AAAATTTAC--AATGGATCAAAAGGGAGTG
gi|12 : G-ATGTT-GAC-ATTGTTTTGAC-------CAGAG-ATC----T-AAT-ATT-GT-CCT-ACAATTTAC--ATTAGATCAAAGAAGAGTGctgtacgcctcttttcatgtatatgggtaagttcaatttatactgctacttcagcatagcagttgtttttgta
gi|14 : gatTCCA---CG--GG---GATAT--TGACAAGAGTTT--T-TGTACTTTCTG---G------------C--------C---------------------------G-TCTGTCACAA--AATC--TGTG-AAAC----C---TTCTCC---TAC-----CAGTTT---TC-AAATAG-CCTT-GAAA-TTT-GTA-G-ATG-----------TGCC-ATTttatagcttttttcatgtataaggtaatgttcaatttctaactgatacttcaacataacagtcattat
gi|19 : TGCAACTTAAATTAAATTATGTC--------CCTCTTCCA---GG--GT---GACAT--T---------TT--T-TCTACTTC--G---T------------C---------GTC------------C-A--TCT----G-TCTGTCA--------CT-TG------------------TCCCC-TATA----CAGTTTG--TC-GGATAG-at
gi|2 : ATAT-AC-TTAAAACTTT-GTGCA-ATG-TTT----CATTGCC-ATTTATTG-AAGTG-CAT-AATGCTGGAAC-------AGGAGGATT----C-AATCATT-TTACTT-TTAAGTTAC--AGAGGATCTAAGAGGGGTGGGATGGGCTGTTAAA-TATATT-GTGAACACTTCT---A-TATGACTTATCAAAGAGACTTATAACTTTGCACAATGCTTTATTGCCAGTTGCAGAAGTGTATTTTGTCTGGACAGGAGGATCCAATCATTTTCCTTAAAGTTATGGTAGATCTAAGAGGG-ATAGAGTGTGTAAAATAGCCTGT-GAACACT--TCTACTACATGGCTTACTGAATAAATGCGAGACTTTGTACAATACTTTAATATCATTTAATGATGTTCACATTAT
gi|24 : -ATGTT-CAT-ATTGTTTGAACT------AAGGGTAT--------ACTATT-TT-CGT-AAGAGTTAA--AACGGACCAAGGAGGAGTGtctaaccaagga
gi|27 : -ATGTT-CAC-ATTGTTCGAACTATAGTCAAGAG-AT--------AT--TT-TT-TCT-ACAATATAC--AGTGGACCAAAGtttagtagctttttttcgtgtggaaagg
gi|28 : G--GG-GAGACAT--TG-------TTT--T-TGTACCCTCTG---T------------C--------CATCAG----------T-G--TCT----C-CCCGTCttttttgtagcttttttcatgcgcaagg
gi|3 : gtaatggattatatcgagtaccaatttccaacccttaatatCTCTTCCA---GG--GC-A-GACATATTG-------TTTAATATGTACTTTCTG---T------------C--------TATC------------C-A--TCT----G-AC----ACAA--AG-CT-GGTG-AAGA----C---TTTTT-TT-TATA----CGGCTTA--TC-AGAGAG-AC-T-----------------TG-CTT----CATTGCC-ATTTGTAG-ATGTG-CAT-ATTGTTAGAAC-------AGGAGGATTCATGC-AGTTATT-TT-CCT--CAAGTTAT--GGTGGATCTAAGAGGGGTGGG--AGA-TATTATA-TAGTTT-GTGAATATAT---CTA-TTTGGGTTATTGGATG-----GAAACTATGTATAATGCTGCATTGCTAT---CACATGTACAT-TTGTCAGGACAGAGGGTTCCAATTATTTTCCTT-AA--------AGATCTAAGAGGG-GTGGAGAATGTAAA--A
gi|30 : atgatgctcaacacttgcctttC-----CCTCTTCCA---AT--GG-AA-ACAA--TG-------TTT--G-TGTACTTTCTG---T------------CAGTCAGTTCGTT------------C-G--TCT----G-TCTGGCTCAA--GACCT-TGTA-AAAG----C---TTCTCCt
gi|32 : GGATA----T-AAT-AGT-TT-CCT-ACAATTTAC--AATGGACCAAAGAGGAGT
gi|34 : tgaactacTTATGTCTCT-----CCTCTTCCA---GG--GGTAGGATCT--CA-------GTT--A-TGTGCTTTCTG---C------------C--------TGTC------------------CT----G-TCTGTCACTA--TATCT-TACG-AACG----acgtgttttgtagtttttctcatgtgcaagg
gi|4 : AC--AATTATGTCTCCGGAACTCTGTTCTA---GA--GG-GGGACAT--TG-------TTT--T-TGTACCTTCTG---TACATCGGTCTGTC--------TGTC------------C-A--TCT----G-TCAGTCACAA--AATCT-CGTG-AACG----CGTCTCCTCCTT-TATG----C--CTTA--TC-AGATAG-ACAT-GAAACTTG-GTACA-ATA-CTT----CATTTCC-GTTTGTAG-ATATG-CAC-ATTGTCAGGAC-------AGGAGAATC----C-AATTATT-TT-CCT-A-AAT---C--GA------AGAGAGGGATGGA--GGA-TGTAAAA-TAGCTT-
gi|41 : tataatgcatataagtattgtCTCCTCCA---GG--G--ATTACAT--T---------TT--T-TGTACTTCCTG---T------------C--------------------------A--TTT--------TGTCACAC--AATCT-TCTG-ATCG----C---TTCTCCa
gi|44 : T--TG-------TTT--T-CATACTTTCTG---T------------C--------TGTC------------A-G--GCTTTCAG-TCTGTTTCAA--AATCT-TGTG-AATG----C---TCCTCC
gi|46 : TATGTC--C-----CCTTCCACA---GG--AG-AAGACAT--TC-------ATT--T-TGTACTTGCTG--------------------------GT-------------C-A--TCT----G-TCTGTCACAA--A
gi|49 : TACTTTCTG---T------------C--------CGTCTGTTCACCTAGCC-G--TCT----G-TTTGTCACAA--AATCT-CGTG-AAC
gi|5 : AC-------AGGAGGATC----C-----------------CAAT---C--GTTGGATCTA-GAGG-GTGGG--GGG-TTTAAAAATAGCTTCATGAACATTT-TCC-A-CATGAGT-ATCGGATGACCTTGATA---TGTA---------ATTATCATTCAT-GATGTCTACATTGTTCTGACCAGAGGATCTAA-TATTTTC
gi|50 : CAGGACAGGAGGGTCCAATTGTTATCCAAAAAAAAAGTTATAG-CGATCTAAGAGgatataatctgaagagtgttttatcagttctttcatgtacaagggtatattcacttacctactggttcattcacatagcagttcttattcttgtatcatatcacaataat
gi|51 : TG---T------------G--------CTTC------------CTG--TCT----G-TCTGTCACAA--AATCT-TACC-AACG----G---TTCTCCT
gi|52 : TTTGATG-ATGTT-CAC-ATTGTTCTAAC--------CAAGGATC----T-AAT-ATT-TT-CGT-ACAATTTcgtataca
gi|53 : TC----T-AAT-ATT-TT-CCT-ACAATTTACATAATAGATCAAAGAAGAGTG
gi|56 : gtcatagc--GG-GAGACAT--TG-------TTT--T-TGTACCTCCTG---T------------C--------CATC------------T-G--TCT----C-CCTGt
gi|57 : --GG-GAGACAT--TG-------TTT--T-TGTACCTCCTG---T------------C--------CATC------------T-G--TCT----C-CCTG
gi|6 : TCTCCTTATATG----AGCTTTAATTC-AATTAA-AC-T-GAAACTTTTGTACA-ATGGCTT----ATTTGCCCATTTGTAGCATGTGGCATTATCGTCAGGAC-------AGG-GGATC----CAAATCATTGTT-CCT-AAAAGTTAT--GATAAAT--------------------------A-TA---T-GTAAATCC--CTCATATTATGGCTTATGGAATAAACTTGAAACTTT-TACAGTGCTTCA-TGCCAT--GCAGCGGTGC-CCTTGTCAGGA-AGGGGGA
gi|7 : tatatacaG-ATGTT-GAC-ATTGTTTTGAC-------CAGAG-ATC----G-AAT-ATT-GT-CCT-ACAATTTAT--ACTAGACCAAAGAAGAGTG
gi|8 : atCAAGT--ATTTATGTCTCC-----CATCTTCCATTTAG--GA-ACGACAT--AG-------TTT--T-TCTA------GAATT------------C--------CGT---------------G--TCT----GTTCTGTT-CAACCAATCTCCGTG--ACGGTTTC---TCCTCCTC-TATGATCTCCACTT---TCAGGATAG-CT-T-GAAACTTTGGTACAGATG-CTT----CATTttatagcttttctcatgtataagggcaatgccatatgttcactttcttactgatacttcagcataagtcattatttttgtatcatatgcaaatga
gi|9 : ttaTGTTCTGAC-------TAGAG-ATC----T-AA-CATT-TT-CCT-ACAGTTTAC--AGTGGTCCCAAGAAGAGT
28 sequences could not be aligned to this reference sequence:
Unaligned ( gi|13 ): TATGCACATTGTTCTCTAAAGGATATGAAAATTTCCCACAATTTACAGTGGAGTGTTTTAGAGCTATTTCGTGTGCAATATTGGGTATTTGAACAACATAACAATTCTTTTTTATATCATATACAACAATGAGA
Unaligned ( gi|15 ): AGAAAGTGTCATAGTGTTTTTTTTTTCATGTACAAGAATATTATTCATTCACGTACAAGATATATATGTTCACTTTCCTACTGGTACTTCAGCACAACAGTCATTGTATCATT
Unaligned ( gi|16 ): TAGTGTTTTATAGCTTTTTTTTTTAATGAAGAAAGGTAAGTTTACTTACCTAAGTGGTACTTCAGCATAACAGTCATTATTTTCGTATCATAAACAACGATGGCATT
Unaligned ( gi|17 ): TCAAACAAAAGTGTTTCATCGCTTCTTCATGTAATTAGTTATGTCCAATGTTTCTACTGACACTTCAATATAACAGTCATTATTTTTGTAACATGGCACCAACAT
Unaligned ( gi|18 ): GCTTTATAGCCTTTCTCATGTTGAAAAGTATATTCACTTTCCTACAGGTACAGGTACTTCAGCACACCAGTTGTTATTTTTGTATCATATACATGTAACAA
Unaligned ( gi|20 ): AATGTTTTATAAAATACTCTTTTTTTATGCACAAGGGTATGTTCACTTACTTACTGGTATATCTATATCATTTATTCTTATTAAATCCAACCATGACAT
Unaligned ( gi|21 ): TTATAGCTTTTTTTCATGTACAAGGGTATTTTCTTTTTTCTACTGGTACTTTAGCATAACAGTAACTGTATTTATTTTTTGTATCATATACAACGACA
Unaligned ( gi|22 ): TTATGGCACCGTTGGCATTAAAACTAGGGATATAACATTCCCCTACGAATTACAGTAGACCAACGAGTTGCCCTCTGTAGCTTTCTTCATGTGCAAGG
Unaligned ( gi|23 ): ACACAATTTCAGTGGATAAAGAGAAGAGTTTTCACATACAAGTGTATGCTCACTTTCCTACTAGTACTTCAGCATAACCGTCAGTATACAACAATA
Unaligned ( gi|25 ): TAGCTTTTTCCATGTACAAGGGTAAGTCCACTTTCCTACTGGTACTTAGCAATATTAACTGTCATTATTTTGTATCATACACATCAATGACATT
Unaligned ( gi|26 ): ATAGCTTTTGTTCCTGTATAAGGTTATATTCACTTTCCTACTGGTACTTTAGCATCATAGTCATTAGTTTGGTGTCATACACAACAATGACATT
Unaligned ( gi|29 ): TATAGTTTTTTCATGTATAAGGGTATGTTCACTTTCTTACTGATACTTCAGCATAACAGTCATTATTTTTGTATCATATGCAAATGA
Unaligned ( gi|31 ): CTTTTTCATGTATAAGGATATGCTCACTTTCCTATACTTCAGCATAACATTTACCGGTATCATTACTGTATCATATACAACAATAT
Unaligned ( gi|33 ): TAGCTTCTCATGCACAAGAATATGGTCACTTTCGTATTGGTACATCAGCATAATAACAGTCATTATTTTTGTATCATAATGC
Unaligned ( gi|35 ): GTAGCTCTTTATGTACAAATGTATGTTCATTTTCCCACTGGCCCTTAGCATAACAGTCATTGATATGTATCATACACGA
Unaligned ( gi|36 ): GTAGCTTTGTTCATGAACAAAGGCATGTTCACTTTCCAACTGGAACTTTAAGCATTTTGTATCATGTACAGCAATGTC
Unaligned ( gi|37 ): ATGTACAGGGGCATGTTCACTTTCCTACTGGTACATCATATTACTTCTGCACAATGGTCATCATTTTTGTATCATG
Unaligned ( gi|38 ): GTTATGTTCACTTTCTTGACTCATCTTCAGCATACAATCATTATTTTTGTATTATATGCAAAAACGAAAT
Unaligned ( gi|39 ): AGGTATGTTCACTTTCCCTATAAGTACATCAGTATTGTTCATTAGGTTTTGTATCGTATACAGCAATGT
Unaligned ( gi|40 ): TTTTTCATGTACAATTCAACGTTCACTTTCCTACTGGTACTTCAGCATAACAGTCATTATATATGCAT
Unaligned ( gi|42 ): GTTATACCTTTTCATGCATATAAAGGGTATGTTCACTTTCTTACTGATACTTCACTTCAGCATAA
Unaligned ( gi|43 ): ATAGTTTTGTTCATGCATCAGGGTATATTTAATTTCTTACTGTTACTTCAGCGTAAAAGTAATTT
Unaligned ( gi|45 ): CTTTTTTTTCATGTACGAGGGTATCTTCGTTTTCCTACTGGTACTTCAGCATAACAGTCATTA
Unaligned ( gi|47 ): ATGTACAGAGATATGTTCACTTTCCTACTTCAGCCTAACAGTCATTGACATTAGT
Unaligned ( gi|48 ): AGTAGTATTTCAGCACTACATTCATTATTTTTGTATCATATACAACAATGACATT
Unaligned ( gi|54 ): ACAATGGACCAAGGAGGAGTGCTTTGTAGCTTCTTTCAAATGTGTAGGG
Unaligned ( gi|55 ): TACAATGGACCAAAGAGGAGTGTTTTGTAGCTATTTTCATATGCAAGG
Unaligned ( gi|58 ): ATATTTAGTATTATTGTATCACATACAATAATGG
Alignments
lowQualScore : 11 11111111 111 111 3333333333333333333333333333333333333333333333 11111111 11 111111111 111 1 1111 11111111 11 11111111 11 1111 1 11 1 11 11 1 44444444444444 22222 11
lowQualScore : 1 33 1 22222222 000 33 000 999999999999 33 2 3333333333333333333333333333333333333333333333 555555 33 3 3 55555555 00 999999999 222 66 4 0 5 77 5 5 5 0000 5 3 55 3 666 88 6 0 33333333 2 2 2 2 0 4444 1 0 99 6 1 00 6 33 6 77777777 8 5 77 0 1 3 0 0 77 0 1 0 8 1 3 5555 3 3 7 88 1 5 88 88 1 2 5 1 00000000000000 1 1 55555 1 66
lowQualScore : . .. . ........ ... .. ... ............ .. . .............................................. ...... .. . . ........ .. ......... ... .. . . . .. . . . .... . . .. . ... .. . . ........ . . . . . .... . . .. . . .. . .. . ........ . . .. . . . . . .. . . . . . . .... . . . .. . . .. .. . . . . .............. . . ..... . ..
lowQualScore : 0 88 0 99999999 000 99 555 999999999999 77 7 6666666666666666666666666666666666666666666666 666666 99 1 1 11111111 88 000000000 000 11 4 0 0 55 0 0 0 6666 7 6 55 3 666 11 1 1 11111111 5 5 5 5 4 9999 1 5 22 7 0 33 7 55 7 66666666 0 0 00 8 4 2 6 8 00 8 0 8 8 0 2 3333 7 3 3 33 0 5 55 55 0 5 5 0 00000000000000 0 0 55555 0 55
consensus : NTGCANCTCAAAT--ANTTATGTCTCC-----CCTCTTCCA---GG--GG-AAGACAT--TG-------TTT--T-TGTACTTTCTG---T------------C--------CGTC------------C-G--TCT----G-TCTGTCACAA--AATCT-TGTG-AACG----C---TTCTCCTT-TATG----CGGCTTA--TC-GGATAG-AC-T-GAAAC-TTT-GTACA-AT-GCTT----CATTG-CCATTTGTAG-ATGT-TCA-CATTGTTCGGAC-NGGAGGATCCA---A--T-ATT-TT-C-CT-ACAATTTAC--GATGGACCAAAGAGGAGTGGG--GGG-TGT-AAAA-TAGCTT-GTGAACACTTCTCCTA-TATGACTTATCGGATAGACTTGAAACTTTGTACAATGCTTCATTGCCATTCGCAGATGTGCATNTTGTCNGGACAGGAGGATCCAATTATTTTCCTT-AAGTTATGGTAGATCTAAGAGGG-GTAGAGAATGTAAA--AGCCTNTAGAACACTTATCTACTACNTGGCCTACCGGATAGACGCGAGACTTTGTNCAATGCTTTAATANCATTTAATGATGTNCACATTNTCGGGGCAGGAGGGTCCAATTGTTATCCAAAANAAAAGTTNTAGANGATCTAAGAGGTGTGGAGGATGTAAACGTTTCCTATATGGCTTATAGCCTAGCCTTGAAAGTTTGTGTACCAGTCCTGTTTTGTGTTGCATGCAACAATGACAT
Reference ( family-883 ) : NTGCANCTCAAAT--ANTTATGTCTCC-----CCTCTTCCA---GG--GG-AAGACAT--TG-------TTT--T-TGTACTTTCTG---T------------C--------CGTC------------C-G--TCT----G-TCTGTCACAA--AATCT-TGTG-AACG----C---TTCTCCTT-TATG----CGGCTTA--TC-GGATAG-AC-T-GAAAC-TTT-GTACA-AT-GCTT----CATTG-CCATTTGTAG-ATGT-TCA-CATTGTTCGGAC-AGGAGGATCCA---A--T-ATT-TT-C-CT-ACAATTTAC--GATGGATCAAAGAGGAGTGGG--GGG-TGT-AAAA-TAGCTT-GTGAACACTTCTCCTA-TATGACTTATCGGATAGACTTGAAACTTTGTACAATGCTTCATTGCCATTCGCAGATGTGCATNTTGTCNGGACAGGAGGATCCAATTATTTTCCTT-AAGTTATGGTAGATCTAAGAGGG-GTAGAGAATGTAAA--AGCCTNTAGAACACTTATCTACTACNTGGCCTACCGGATAGACGCGAGACTTTGTNCAATGCTTTAATANCATTTAATGATGTNCACATTNTCGGGGCAGGAGGGTCCAATTGTTATCCAAAANAAAAGTTNTAGANGATCTAAGAGGTGTGGAGGATGTAAACGTTTCCTATATGGCTTATAGCCTAGCCTTGAAAGTTTGTGTACCAGTCCTGTTTTGTGTTGCATGCAACAATGACAT
gi|1 : TGCATTTCAAAT--ATTTATTTCTCG-----CCTCTTCCA---GG--GG-AAGACAT--TG-------TTT--T-TGTGCTTACTG---T------------C--------CATC------------C-G--TTT----G-TCTGTCACAA--AATCT-TGTA-AACG----C---TTCTCCTTGTATA----CAGCTTA--TC-GGATAG-AA-T-GTAAC-TTT-GTGCA-AT-GCTT----CATTG-TCAGTTGCAG-AAGT-GAA-TATTTCCTGGCC-AGGAGGATACA---A--TTCTT-TT-C-CTTACAGTA-AA--GATGGATCTAAGAGGGATGGA--AGG-TGT-AAAAATAGCTT-GTGAACACTTCCCCTA-TATGACTTATCAGATAGACTTGAAACTTTGTACAATGCTTCATTGCTATTTGTAGATGTGCATATTGTCTGGACAGGAGAAATCACTTATTTTCTAT-ACATTATGATGGATCTAAGAGGATGTAAAAAA---AAA--AACCTTTAAAACATTTATC--CTATTTGGCCTATCAGATAGACTTGAAACTT-GTTCAATGCTT-----GCA------GATGTGCATATTCTCGGGGCAGAAGGATCCAATTGTTATCC----TAAAAGTTTTAGAGGATCTAAGAGGTGTGGAGGATGTAAACGTTTCCTATATGGCTTATAGCCTAGCCTTGAAAGTTTGTGTACCAGTCCTGTTTTGTGTTGCATGCAACAATGACAT
gi|10 : tTTATGTCTCC-----CCTCTTCCAT--GGGTGG-CAAACATA-CG--------TT--T-TGTACTTTCTG---T------------A--------TGTT------------C-AGTTCT----A-CCTGTCAC-A--AATCT-TGTGAAACGGGGTC---TCCTCCTG-TATT----TGA---A--T----ATAGAAT-T-GAAAA-ATT-TTACA-GT-GCTTACAACATTG-CCA
gi|11 : G-ATAT-TCA-CATTATTTTAAT--TGCGGTTCTA---A--T-ATT-CT-C-GT-AAAATTTAC--AATGGATCAAAAGGGAGTG
gi|12 : G-ATGT-TGA-CATTGTTTTGAC-CAGAG-ATCTA---A--T-ATT-GT-C-CT-ACAATTTAC--ATTAGATCAAAGAAGAGTGctgtacgcctcttttcatgtatatgggtaagttcaatttatactgctacttcagcatagcagttgtttttgta
gi|13 : gatCA-CATTGTTCT--C-TAAAGGATATG---A--A-AAT-TT-C-CC-ACAATTTAC--AGTGGAttatagcttttttcatgtataaggtaatgttcaatttctaactgatacttcaacataacagtcattat
gi|14 : tatgTCCA---CG--GG---GATAT--TGACAAGAGTTT--T-TGTACTTTCTG---G------------C--------C---------------------------G-TCTGTCACAA--AATC--TGTG-AAAC----C---TTCTCC---TAC-----CAGTTT---TC-AAATAG-CCTT-GAAA--TTT-GTA-G-AT-G----------TG-CCATTgtgttttagagctatttcgtgtgcaatattgggtatttgaacaacataacaattcttttttatatcatatacaacaatgaga
gi|19 : TGCAACTTAAATTAAATTATGTC--------CCTCTTCCA---GG--GT---GACAT--T---------TT--T-TCTACTTC--G---T------------C---------GTC------------C-A--TCT----G-TCTGTCA--------CT-TG------------------TCCCC-TATA----CAGTTTG--TC-GGATAG-at
gi|2 : ATAT-AC-TTAAAAC-TTT-GTGCA-AT-GTTT----CATTG-CCATTTATTG-AAGT-GCA-TAATGCTGGAAC-AGGAGGATTCA---A--TCATT-TTAC-TT-TTAAGTTAC--AGAGGATCTAAGAGGGGTGGGATGGGCTGT-TAAA-TATATT-GTGAACACTTCT---A-TATGACTTATCAAAGAGACTTATAACTTTGCACAATGCTTTATTGCCAGTTGCAGAAGTGTATTTTGTCTGGACAGGAGGATCCAATCATTTTCCTTAAAGTTATGGTAGATCTAAGAGGG-ATAGAGTGTGTAAAATAGCCTGT-GAACACT--TCTACTACATGGCTTACTGAATAAATGCGAGACTTTGTACAATACTTTAATATCATTTAATGATGTTCACATTAT
gi|24 : -ATGT-TCA-TATTGTTTGAACTAAGGGTATAC-------T-ATT-TT-C-GT-AAGAGTTAA--AACGGACCAAGGAGGAGTGtctaaccaagga
gi|27 : -ATGT-TCA-CATTGTTCGAAC-TATAG--TCAAGAGA--T-ATT-TT-TTCT-ACAATATAC--AGTGGACCAAAGtttagtagctttttttcgtgtggaaagg
gi|28 : G--GG-GAGACAT--TG-------TTT--T-TGTACCCTCTG---T------------C--------CATCAG----------T-G--TCT----C-CCCGTCttttttgtagcttttttcatgcgcaagg
gi|3 : gtaatggattatatcgagtaccaatttccaacccttaatatCTCTTCCA---GG--GC-A-GACATATTG-------TTTAATATGTACTTTCTG---T------------C--------TATC------------C-A--TCT----G-AC----ACAA--AG-CT-GGTG-AAGA----C---TTTTT-TT-TATA----CGGCTTA--TC-AGAGAG-AC-T------------------T-GCTT----CATTG-CCATTTGTAG-ATGT-GCA-TATTGTTAGAAC-AGGAGGATTCATGCAGTT-ATT-TT-C-CT--CAAGTTAT--GGTGGATCTAAGAGGGGTGGG--AGA-TAT-TATA-TAGTTT-GTGAATATAT---CTA-TTTGGGTTATTGGATG-----GAAACTATGTATAATGCTGCATTGCTAT---CACATGTACAT-TTGTCAGGACAGAGGGTTCCAATTATTTTCCTT-AA--------AGATCTAAGAGGG-GTGGAGAATGTAAA--A
gi|30 : atgatgctcaacacttgcctttC-----CCTCTTCCA---AT--GG-AA-ACAA--TG-------TTT--G-TGTACTTTCTG---T------------CAGTCAGTTCGTT------------C-G--TCT----G-TCTGGCTCAA--GACCT-TGTA-AAAG----C---TTCTCCt
gi|32 : GGATATA---A--T-AGT-TT-C-CT-ACAATTTAC--AATGGACCAAAGAGGAGT
gi|34 : tgaactacTTATGTCTCT-----CCTCTTCCA---GG--GGTAGGATCT--CA-------GTT--A-TGTGCTTTCTG---C------------C--------TGTC------------------CT----G-TCTGTCACTA--TATCT-TACG-AACG----acgtgttttgtagtttttctcatgtgcaagg
gi|4 : AC--AATTATGTCTCCGGAACTCTGTTCTA---GA--GG-GGGACAT--TG-------TTT--T-TGTACCTTCTG---TACATCGGTCTGTC--------TGTC------------C-A--TCT----G-TCAGTCACAA--AATCT-CGTG-AACG----CGTCTCCTCCTT-TATG----C--CTTA--TC-AGATAG-ACAT-GAAAC-TTG-GTACA-AT-ACTT----CATTT-CCGTTTGTAG-ATAT-GCA-CATTGTCAGGAC-AGGAGAATCCA---AT-T-ATT-TT-C-CT-A-AAT---C--GA------AGAGAGGGATGGA--GGA-TGT-AAAA-TAGCTT-
gi|41 : tataatgcatataagtattgtCTCCTCCA---GG--G--ATTACAT--T---------TT--T-TGTACTTCCTG---T------------C--------------------------A--TTT--------TGTCACAC--AATCT-TCTG-ATCG----C---TTCTCCa
gi|44 : T--TG-------TTT--T-CATACTTTCTG---T------------C--------TGTC------------A-G--GCTTTCAG-TCTGTTTCAA--AATCT-TGTG-AATG----C---TCCTCC
gi|46 : TATGTC--C-----CCTTCCACA---GG--AG-AAGACAT--TC-------ATT--T-TGTACTTGCTG--------------------------GT-------------C-A--TCT----G-TCTGTCACAA--A
gi|49 : TACTTTCTG---T------------C--------CGTCTGTTCACCTAGCC-G--TCT----G-TTTGTCACAA--AATCT-CGTG-AAC
gi|5 : AC-AGGAGGATCC----------------------CAAT---C--GTTGGATCTA-GAGG-GTGGG--GGG-TTTAAAAA-TAGCTTCATGAACA-TTTTCC-A-CATGA-GTATCGGATGACCTTGA---TATGTA---------ATTATCATTCAT-GATGTCTACATTGTTCTGACCAGAGGATCTAA-TATTTTC
gi|50 : CAGGACAGGAGGGTCCAATTGTTATCCAAAAAAAAAGTTATAG-CGATCTAAGAGgatataatctgaagagtgttttatcagttctttcatgtacaagggtatattcacttacctactggttcattcacatagcagttcttattcttgtatcatatcacaataat
gi|51 : TG---T------------G--------CTTC------------CTG--TCT----G-TCTGTCACAA--AATCT-TACC-AACG----G---TTCTCCT
gi|52 : TTTGATG-ATGT-TCA-CATTGTTCTAAC-CA-AGGATCTA---A--T-ATT-TT-C-GT-ACAATTTcgtataca
gi|53 : TCTA---A--T-ATT-TT-C-CT-ACAATTTACATAATAGATCAAAGAAGAGTG
gi|55 : gtcatagcTAC--AATGGACCAAAGAGGAGTGt
gi|56 : --GG-GAGACAT--TG-------TTT--T-TGTACCTCCTG---T------------C--------CATC------------T-G--TCT----C-CCTGttttgtagctattttcatatgcaagg
gi|57 : --GG-GAGACAT--TG-------TTT--T-TGTACCTCCTG---T------------C--------CATC------------T-G--TCT----C-CCTG
gi|6 : TCTCCTTATATG----AGCTTTAATTC-AATTAA-AC-T-GAAACTTTT-GTACA-ATGGCTT----ATTTGCCCATTTGTAGCATGTGGCATTATCGTCAGGAC-AGG-GGATCCA---AATC-ATTGTT-C-CT-AAAAGTTAT--GATAAAT---------------------------A-TA---T-GTAAATCC--CTCATATTATGGCTTATGGAATAAACTTGAAACTTT-TACAGTGCTTCA-TGCCAT--GCAGCGGTGC-CCTTGTCAGGA-AGGGGGA
gi|7 : tatatacaG-ATGT-TGA-CATTGTTTTGAC-CAGAG-ATCGA---A--T-ATT-GT-C-CT-ACAATTTAT--ACTAGACCAAAGAAGAGTG
gi|8 : atCAAGT--ATTTATGTCTCC-----CATCTTCCATTTAG--GA-ACGACAT--AG-------TTT--T-TCTA------GAATT------------C--------CGT---------------G--TCT----GTTCTGTT-CAACCAATCTCCGTG--ACGGTTTC---TCCTCCTC-TATGATCTCCACTT---TCAGGATAG-CT-T-GAAAC-TTTGGTACAGAT-GCTT----CATTttatagcttttctcatgtataagggcaatgccatatgttcactttcttactgatacttcagcataagtcattatttttgtatcatatgcaaatga
gi|9 : ttaTGTTCTGAC-TAGAG-ATCTA---A--C-ATT-TT-C-CT-ACAGTTTAC--AGTGGTCCCAAGAAGAGT
26 sequences could not be aligned to this reference sequence:
Unaligned ( gi|15 ): AGAAAGTGTCATAGTGTTTTTTTTTTCATGTACAAGAATATTATTCATTCACGTACAAGATATATATGTTCACTTTCCTACTGGTACTTCAGCACAACAGTCATTGTATCATT
Unaligned ( gi|16 ): TAGTGTTTTATAGCTTTTTTTTTTAATGAAGAAAGGTAAGTTTACTTACCTAAGTGGTACTTCAGCATAACAGTCATTATTTTCGTATCATAAACAACGATGGCATT
Unaligned ( gi|17 ): TCAAACAAAAGTGTTTCATCGCTTCTTCATGTAATTAGTTATGTCCAATGTTTCTACTGACACTTCAATATAACAGTCATTATTTTTGTAACATGGCACCAACAT
Unaligned ( gi|18 ): GCTTTATAGCCTTTCTCATGTTGAAAAGTATATTCACTTTCCTACAGGTACAGGTACTTCAGCACACCAGTTGTTATTTTTGTATCATATACATGTAACAA
Unaligned ( gi|20 ): AATGTTTTATAAAATACTCTTTTTTTATGCACAAGGGTATGTTCACTTACTTACTGGTATATCTATATCATTTATTCTTATTAAATCCAACCATGACAT
Unaligned ( gi|21 ): TTATAGCTTTTTTTCATGTACAAGGGTATTTTCTTTTTTCTACTGGTACTTTAGCATAACAGTAACTGTATTTATTTTTTGTATCATATACAACGACA
Unaligned ( gi|22 ): TTATGGCACCGTTGGCATTAAAACTAGGGATATAACATTCCCCTACGAATTACAGTAGACCAACGAGTTGCCCTCTGTAGCTTTCTTCATGTGCAAGG
Unaligned ( gi|23 ): ACACAATTTCAGTGGATAAAGAGAAGAGTTTTCACATACAAGTGTATGCTCACTTTCCTACTAGTACTTCAGCATAACCGTCAGTATACAACAATA
Unaligned ( gi|25 ): TAGCTTTTTCCATGTACAAGGGTAAGTCCACTTTCCTACTGGTACTTAGCAATATTAACTGTCATTATTTTGTATCATACACATCAATGACATT
Unaligned ( gi|26 ): ATAGCTTTTGTTCCTGTATAAGGTTATATTCACTTTCCTACTGGTACTTTAGCATCATAGTCATTAGTTTGGTGTCATACACAACAATGACATT
Unaligned ( gi|29 ): TATAGTTTTTTCATGTATAAGGGTATGTTCACTTTCTTACTGATACTTCAGCATAACAGTCATTATTTTTGTATCATATGCAAATGA
Unaligned ( gi|31 ): CTTTTTCATGTATAAGGATATGCTCACTTTCCTATACTTCAGCATAACATTTACCGGTATCATTACTGTATCATATACAACAATAT
Unaligned ( gi|33 ): TAGCTTCTCATGCACAAGAATATGGTCACTTTCGTATTGGTACATCAGCATAATAACAGTCATTATTTTTGTATCATAATGC
Unaligned ( gi|35 ): GTAGCTCTTTATGTACAAATGTATGTTCATTTTCCCACTGGCCCTTAGCATAACAGTCATTGATATGTATCATACACGA
Unaligned ( gi|36 ): GTAGCTTTGTTCATGAACAAAGGCATGTTCACTTTCCAACTGGAACTTTAAGCATTTTGTATCATGTACAGCAATGTC
Unaligned ( gi|37 ): ATGTACAGGGGCATGTTCACTTTCCTACTGGTACATCATATTACTTCTGCACAATGGTCATCATTTTTGTATCATG
Unaligned ( gi|38 ): GTTATGTTCACTTTCTTGACTCATCTTCAGCATACAATCATTATTTTTGTATTATATGCAAAAACGAAAT
Unaligned ( gi|39 ): AGGTATGTTCACTTTCCCTATAAGTACATCAGTATTGTTCATTAGGTTTTGTATCGTATACAGCAATGT
Unaligned ( gi|40 ): TTTTTCATGTACAATTCAACGTTCACTTTCCTACTGGTACTTCAGCATAACAGTCATTATATATGCAT
Unaligned ( gi|42 ): GTTATACCTTTTCATGCATATAAAGGGTATGTTCACTTTCTTACTGATACTTCACTTCAGCATAA
Unaligned ( gi|43 ): ATAGTTTTGTTCATGCATCAGGGTATATTTAATTTCTTACTGTTACTTCAGCGTAAAAGTAATTT
Unaligned ( gi|45 ): CTTTTTTTTCATGTACGAGGGTATCTTCGTTTTCCTACTGGTACTTCAGCATAACAGTCATTA
Unaligned ( gi|47 ): ATGTACAGAGATATGTTCACTTTCCTACTTCAGCCTAACAGTCATTGACATTAGT
Unaligned ( gi|48 ): AGTAGTATTTCAGCACTACATTCATTATTTTTGTATCATATACAACAATGACATT
Unaligned ( gi|54 ): ACAATGGACCAAGGAGGAGTGCTTTGTAGCTTCTTTCAAATGTGTAGGG
Unaligned ( gi|58 ): ATATTTAGTATTATTGTATCACATACAATAATGG
Alignments
lowQualScore : 11 11111111 111 111 3333333333333333333333333333333333333333333333 11111111 11 111111111 111 1 1111 11111111 1 2222222 11 1111 1 11 1 11 11 1 44444444444444 22222 11
lowQualScore : 1 33 1 22222222 000 33 000 999999999999 33 2 3333333333333333333333333333333333333333333333 555555 33 3 3 55555555 00 999999999 222 66 4 0 5 77 5 5 5 0000 5 3 55 3 666 1 1 4 1 33333333 2 2 2 2 0 4444 0 0 99 6 3 1 6 1111111 8 0 77 1 3 0 0 77 0 1 0 8 1 3 5555 3 3 7 88 1 5 88 88 1 2 5 1 00000000000000 1 1 55555 1 66
lowQualScore : . .. . ........ ... .. ... ............ .. . .............................................. ...... .. . . ........ .. ......... ... .. . . . .. . . . .... . . .. . ... . . . . ........ . . . . . .... . . .. . . . . ....... . . .. . . . . .. . . . . . . .... . . . .. . . .. .. . . . . .............. . . ..... . ..
lowQualScore : 0 88 0 99999999 000 99 555 999999999999 77 7 6666666666666666666666666666666666666666666666 666666 99 1 1 11111111 88 000000000 000 11 4 0 0 55 0 0 0 6666 7 6 55 3 666 0 9 4 1 11111111 5 5 5 5 4 9999 8 5 22 7 3 0 7 2222222 0 8 00 0 2 6 8 00 8 0 8 8 0 2 3333 7 3 3 33 0 5 55 55 0 5 5 0 00000000000000 0 0 55555 0 55
consensus : NTGCANCTCAAAT--ANTTATGTCTCC-----CCTCTTCCA---GG--GG-AAGACAT--TG-------TTT--T-TGTACTTTCTG---T------------C--------CGTC------------C-G--TCT----G-TCTGTCACAA--AATCT-TGTG-AACG----C---TTCTCCTT-TATG----CGGCTTA--TC-GGATAG-AC-T-GAAAC-TTT-GTACA-AT-GCTT----CATTG-CCATTTGTAG-ATGT-TCA-CATTGTTCGGACNGGAGGATCCA---A--T-ATT-TT-C-CT-ACAATTTAC--GATGGACCAAAGAGGAGTGGG--GGG-TGTAAAA-TAGCTT-GTGAACACTTCTCCTA-TATGACTTATCGGATAGACTTGAAACTTTGTACAATGCTTCATTGCCATTCGCAGATGTGCATNTTGTCNGGACAGGAGGATCCAATTATTTTCCTT-AAGTTATGGTAGATCTAAGAGGG-GTAGAGAATGTAAA--AGCCTNTAGAACACTTATCTACTACNTGGCCTACCGGATAGACGCGAGACTTTGTNCAATGCTTTAATANCATTTAATGATGTNCACATTNTCGGGGCAGGAGGGTCCAATTGTTATCCAAAANAAAAGTTNTAGANGATCTAAGAGGTGTGGAGGATGTAAACGTTTCCTATATGGCTTATAGCCTAGCCTTGAAAGTTTGTGTACCAGTCCTGTTTTGTGTTGCATGCAACAATGACAT
Reference ( family-883 ) : NTGCANCTCAAAT--ANTTATGTCTCC-----CCTCTTCCA---GG--GG-AAGACAT--TG-------TTT--T-TGTACTTTCTG---T------------C--------CGTC------------C-G--TCT----G-TCTGTCACAA--AATCT-TGTG-AACG----C---TTCTCCTT-TATG----CGGCTTA--TC-GGATAG-AC-T-GAAAC-TTT-GTACA-AT-GCTT----CATTG-CCATTTGTAG-ATGT-TCA-CATTGTTCGGACNGGAGGATCCA---A--T-ATT-TT-C-CT-ACAATTTAC--GATGGACCAAAGAGGAGTGGG--GGG-TGTAAAA-TAGCTT-GTGAACACTTCTCCTA-TATGACTTATCGGATAGACTTGAAACTTTGTACAATGCTTCATTGCCATTCGCAGATGTGCATNTTGTCNGGACAGGAGGATCCAATTATTTTCCTT-AAGTTATGGTAGATCTAAGAGGG-GTAGAGAATGTAAA--AGCCTNTAGAACACTTATCTACTACNTGGCCTACCGGATAGACGCGAGACTTTGTNCAATGCTTTAATANCATTTAATGATGTNCACATTNTCGGGGCAGGAGGGTCCAATTGTTATCCAAAANAAAAGTTNTAGANGATCTAAGAGGTGTGGAGGATGTAAACGTTTCCTATATGGCTTATAGCCTAGCCTTGAAAGTTTGTGTACCAGTCCTGTTTTGTGTTGCATGCAACAATGACAT
gi|1 : TGCATTTCAAAT--ATTTATTTCTCG-----CCTCTTCCA---GG--GG-AAGACAT--TG-------TTT--T-TGTGCTTACTG---T------------C--------CATC------------C-G--TTT----G-TCTGTCACAA--AATCT-TGTA-AACG----C---TTCTCCTTGTATA----CAGCTTA--TC-GGATAG-AA-T-GTAAC-TTT-GTGCA-AT-GCTT----CATTG-TCAGTTGCAG-AAGT-GAA-TATTTCCTGGCCAGGAGGATACA---A--TTCTT-TT-C-CTTACAGTA-AA--GATGGATCTAAGAGGGATGGA--AGG-TGTAAAAATAGCTT-GTGAACACTTCCCCTA-TATGACTTATCAGATAGACTTGAAACTTTGTACAATGCTTCATTGCTATTTGTAGATGTGCATATTGTCTGGACAGGAGAAATCACTTATTTTCTAT-ACATTATGATGGATCTAAGAGGATGTAAAAAA---AAA--AACCTTTAAAACATTTATC--CTATTTGGCCTATCAGATAGACTTGAAACTT-GTTCAATGCTT-----GCA------GATGTGCATATTCTCGGGGCAGAAGGATCCAATTGTTATCC----TAAAAGTTTTAGAGGATCTAAGAGGTGTGGAGGATGTAAACGTTTCCTATATGGCTTATAGCCTAGCCTTGAAAGTTTGTGTACCAGTCCTGTTTTGTGTTGCATGCAACAATGACAT
gi|10 : tTTATGTCTCC-----CCTCTTCCAT--GGGTGG-CAAACATA-CG--------TT--T-TGTACTTTCTG---T------------A--------TGTT------------C-AGTTCT----A-CCTGTCAC-A--AATCT-TGTGAAACGGGGTC---TCCTCCTG-TATT----TGA---A--T----ATAGAAT-T-GAAAA-ATT-TTACA-GT-GCTTACAACATTG-CCA
gi|11 : G-ATAT-TCA-CATTATTTTAATTGC-GGTTCTA---A--T-ATT-CT-C-GT-AAAATTTAC--AATGGATCAAAAGGGAGTG
gi|12 : G-ATGT-TGA-CATTGTTTTGACCAGAG-ATCTA---A--T-ATT-GT-C-CT-ACAATTTAC--ATTAGATCAAAGAAGAGTGctgtacgcctcttttcatgtatatgggtaagttcaatttatactgctacttcagcatagcagttgtttttgta
gi|13 : gatCA-CATTGTTCT--CTAAAGGATATG---A--A-AAT-TT-C-CC-ACAATTTAC--AGTGGAttatagcttttttcatgtataaggtaatgttcaatttctaactgatacttcaacataacagtcattat
gi|14 : tatgTCCA---CG--GG---GATAT--TGACAAGAGTTT--T-TGTACTTTCTG---G------------C--------C---------------------------G-TCTGTCACAA--AATC--TGTG-AAAC----C---TTCTCC---TAC-----CAGTTT---TC-AAATAG-CCTT-GAAA--TTT-GTA-G-AT-G----------TG-CCATTgtgttttagagctatttcgtgtgcaatattgggtatttgaacaacataacaattcttttttatatcatatacaacaatgaga
gi|19 : TGCAACTTAAATTAAATTATGTC--------CCTCTTCCA---GG--GT---GACAT--T---------TT--T-TCTACTTC--G---T------------C---------GTC------------C-A--TCT----G-TCTGTCA--------CT-TG------------------TCCCC-TATA----CAGTTTG--TC-GGATAG-at
gi|2 : ATAT-AC-TTAAAAC-TTT-GTGCA-AT-GTTT----CATTG-CCATTTATTG-AAGT-GCA-TAATGCTGGAACAGGAGGATTCA---A--TCATT-TTAC-TT-TTAAGTTAC--AGAGGATCTAAGAGGGGTGGGATGGGCTGTTAAA-TATATT-GTGAACACTTCT---A-TATGACTTATCAAAGAGACTTATAACTTTGCACAATGCTTTATTGCCAGTTGCAGAAGTGTATTTTGTCTGGACAGGAGGATCCAATCATTTTCCTTAAAGTTATGGTAGATCTAAGAGGG-ATAGAGTGTGTAAAATAGCCTGT-GAACACT--TCTACTACATGGCTTACTGAATAAATGCGAGACTTTGTACAATACTTTAATATCATTTAATGATGTTCACATTAT
gi|24 : -ATGT-TCA-TATTGTTTGAACTA-AGGGTATA---C--T-ATT-TT-C-GT-AAGAGTTAA--AACGGACCAAGGAGGAGTGtctaaccaagga
gi|27 : -ATGT-TCA-CATTGTTCGAACTATAG--TCAAGAGA--T-ATT-TT-TTCT-ACAATATAC--AGTGGACCAAAGtttagtagctttttttcgtgtggaaagg
gi|28 : G--GG-GAGACAT--TG-------TTT--T-TGTACCCTCTG---T------------C--------CATCAG----------T-G--TCT----C-CCCGTCttttttgtagcttttttcatgcgcaagg
gi|3 : gtaatggattatatcgagtaccaatttccaacccttaatatCTCTTCCA---GG--GC-A-GACATATTG-------TTTAATATGTACTTTCTG---T------------C--------TATC------------C-A--TCT----G-AC----ACAA--AG-CT-GGTG-AAGA----C---TTTTT-TT-TATA----CGGCTTA--TC-AGAGAG-AC-T------------------T-GCTT----CATTG-CCATTTGTAG-ATGT-GCA-TATTGTTAGAACAGGAGGATTCATGCAGTT-ATT-TT-C-CT--CAAGTTAT--GGTGGATCTAAGAGGGGTGGG--AGA-TATTATA-TAGTTT-GTGAATATAT---CTA-TTTGGGTTATTGGATG-----GAAACTATGTATAATGCTGCATTGCTAT---CACATGTACAT-TTGTCAGGACAGAGGGTTCCAATTATTTTCCTT-AA--------AGATCTAAGAGGG-GTGGAGAATGTAAA--A
gi|30 : atgatgctcaacacttgcctttC-----CCTCTTCCA---AT--GG-AA-ACAA--TG-------TTT--G-TGTACTTTCTG---T------------CAGTCAGTTCGTT------------C-G--TCT----G-TCTGGCTCAA--GACCT-TGTA-AAAG----C---TTCTCCt
gi|32 : GGATATA---A--T-AGT-TT-C-CT-ACAATTTAC--AATGGACCAAAGAGGAGT
gi|34 : tgaactacTTATGTCTCT-----CCTCTTCCA---GG--GGTAGGATCT--CA-------GTT--A-TGTGCTTTCTG---C------------C--------TGTC------------------CT----G-TCTGTCACTA--TATCT-TACG-AACG----acgtgttttgtagtttttctcatgtgcaagg
gi|4 : AC--AATTATGTCTCCGGAACTCTGTTCTA---GA--GG-GGGACAT--TG-------TTT--T-TGTACCTTCTG---TACATCGGTCTGTC--------TGTC------------C-A--TCT----G-TCAGTCACAA--AATCT-CGTG-AACG----CGTCTCCTCCTT-TATG----C--CTTA--TC-AGATAG-ACAT-GAAAC-TTG-GTACA-AT-ACTT----CATTT-CCGTTTGTAG-ATAT-GCA-CATTGTCAGGACAGGAGAATCCA---AT-T-ATT-TT-C-CT-A-AAT---C--GA------AGAGAGGGATGGA--GGA-TGTAAAA-TAGCTT-
gi|41 : tataatgcatataagtattgtCTCCTCCA---GG--G--ATTACAT--T---------TT--T-TGTACTTCCTG---T------------C--------------------------A--TTT--------TGTCACAC--AATCT-TCTG-ATCG----C---TTCTCCa
gi|44 : T--TG-------TTT--T-CATACTTTCTG---T------------C--------TGTC------------A-G--GCTTTCAG-TCTGTTTCAA--AATCT-TGTG-AATG----C---TCCTCC
gi|46 : TATGTC--C-----CCTTCCACA---GG--AG-AAGACAT--TC-------ATT--T-TGTACTTGCTG--------------------------GT-------------C-A--TCT----G-TCTGTCACAA--A
gi|49 : TACTTTCTG---T------------C--------CGTCTGTTCACCTAGCC-G--TCT----G-TTTGTCACAA--AATCT-CGTG-AAC
gi|5 : ACAGGAGGATCC----------------------CAAT---C--GTTGGATCTA-GAGG-GTGGG--GGG-TTTAAAAATAGCTTCATGAACATTT-TCC-A-CATGAGT-ATCGGATGACCTTGATA---TGTA---------ATTATCATTCAT-GATGTCTACATTGTTCTGACCAGAGGATCTAA-TATTTTC
gi|50 : CAGGACAGGAGGGTCCAATTGTTATCCAAAAAAAAAGTTATAG-CGATCTAAGAGgatataatctgaagagtgttttatcagttctttcatgtacaagggtatattcacttacctactggttcattcacatagcagttcttattcttgtatcatatcacaataat
gi|51 : TG---T------------G--------CTTC------------CTG--TCT----G-TCTGTCACAA--AATCT-TACC-AACG----G---TTCTCCT
gi|52 : TTTGATG-ATGT-TCA-CATTGTTCTAACCA-AGGATCTA---A--T-ATT-TT-C-GT-ACAATTTcgtataca
gi|53 : TCTA---A--T-ATT-TT-C-CT-ACAATTTACATAATAGATCAAAGAAGAGTG
gi|55 : gtcatagcTAC--AATGGACCAAAGAGGAGTGt
gi|56 : --GG-GAGACAT--TG-------TTT--T-TGTACCTCCTG---T------------C--------CATC------------T-G--TCT----C-CCTGttttgtagctattttcatatgcaagg
gi|57 : --GG-GAGACAT--TG-------TTT--T-TGTACCTCCTG---T------------C--------CATC------------T-G--TCT----C-CCTG
gi|6 : TCTCCTTATATG----AGCTTTAATTC-AATTAA-AC-T-GAAACTTTT-GTACA-ATGGCTT----ATTTGCCCATTTGTAGCATGTGGCATTATCGTCAGGACAGG-GGATCCA---AATC-ATTGTT-C-CT-AAAAGTTAT--GAT-----AAA----------------TATA---------T-GTAAATCC--CTCATATTATGGCTTATGGAATAAACTTGAAACTTT-TACAGTGCTTCA-TGCCAT--GCAGCGGTGC-CCTTGTCAGGA-AGGGGGA
gi|7 : tatatacaG-ATGT-TGA-CATTGTTTTGACCAGAG-ATCGA---A--T-ATT-GT-C-CT-ACAATTTAT--ACTAGACCAAAGAAGAGTG
gi|8 : atCAAGT--ATTTATGTCTCC-----CATCTTCCATTTAG--GA-ACGACAT--AG-------TTT--T-TCTA------GAATT------------C--------CGT---------------G--TCT----GTTCTGTT-CAACCAATCTCCGTG--ACGGTTTC---TCCTCCTC-TATGATCTCCACTT---TCAGGATAG-CT-T-GAAAC-TTTGGTACAGAT-GCTT----CATTttatagcttttctcatgtataagggcaatgccatatgttcactttcttactgatacttcagcataagtcattatttttgtatcatatgcaaatga
gi|9 : ttaTGTTCTGACTAGAG-ATCTA---A--C-ATT-TT-C-CT-ACAGTTTAC--AGTGGTCCCAAGAAGAGT
26 sequences could not be aligned to this reference sequence:
Unaligned ( gi|15 ): AGAAAGTGTCATAGTGTTTTTTTTTTCATGTACAAGAATATTATTCATTCACGTACAAGATATATATGTTCACTTTCCTACTGGTACTTCAGCACAACAGTCATTGTATCATT
Unaligned ( gi|16 ): TAGTGTTTTATAGCTTTTTTTTTTAATGAAGAAAGGTAAGTTTACTTACCTAAGTGGTACTTCAGCATAACAGTCATTATTTTCGTATCATAAACAACGATGGCATT
Unaligned ( gi|17 ): TCAAACAAAAGTGTTTCATCGCTTCTTCATGTAATTAGTTATGTCCAATGTTTCTACTGACACTTCAATATAACAGTCATTATTTTTGTAACATGGCACCAACAT
Unaligned ( gi|18 ): GCTTTATAGCCTTTCTCATGTTGAAAAGTATATTCACTTTCCTACAGGTACAGGTACTTCAGCACACCAGTTGTTATTTTTGTATCATATACATGTAACAA
Unaligned ( gi|20 ): AATGTTTTATAAAATACTCTTTTTTTATGCACAAGGGTATGTTCACTTACTTACTGGTATATCTATATCATTTATTCTTATTAAATCCAACCATGACAT
Unaligned ( gi|21 ): TTATAGCTTTTTTTCATGTACAAGGGTATTTTCTTTTTTCTACTGGTACTTTAGCATAACAGTAACTGTATTTATTTTTTGTATCATATACAACGACA
Unaligned ( gi|22 ): TTATGGCACCGTTGGCATTAAAACTAGGGATATAACATTCCCCTACGAATTACAGTAGACCAACGAGTTGCCCTCTGTAGCTTTCTTCATGTGCAAGG
Unaligned ( gi|23 ): ACACAATTTCAGTGGATAAAGAGAAGAGTTTTCACATACAAGTGTATGCTCACTTTCCTACTAGTACTTCAGCATAACCGTCAGTATACAACAATA
Unaligned ( gi|25 ): TAGCTTTTTCCATGTACAAGGGTAAGTCCACTTTCCTACTGGTACTTAGCAATATTAACTGTCATTATTTTGTATCATACACATCAATGACATT
Unaligned ( gi|26 ): ATAGCTTTTGTTCCTGTATAAGGTTATATTCACTTTCCTACTGGTACTTTAGCATCATAGTCATTAGTTTGGTGTCATACACAACAATGACATT
Unaligned ( gi|29 ): TATAGTTTTTTCATGTATAAGGGTATGTTCACTTTCTTACTGATACTTCAGCATAACAGTCATTATTTTTGTATCATATGCAAATGA
Unaligned ( gi|31 ): CTTTTTCATGTATAAGGATATGCTCACTTTCCTATACTTCAGCATAACATTTACCGGTATCATTACTGTATCATATACAACAATAT
Unaligned ( gi|33 ): TAGCTTCTCATGCACAAGAATATGGTCACTTTCGTATTGGTACATCAGCATAATAACAGTCATTATTTTTGTATCATAATGC
Unaligned ( gi|35 ): GTAGCTCTTTATGTACAAATGTATGTTCATTTTCCCACTGGCCCTTAGCATAACAGTCATTGATATGTATCATACACGA
Unaligned ( gi|36 ): GTAGCTTTGTTCATGAACAAAGGCATGTTCACTTTCCAACTGGAACTTTAAGCATTTTGTATCATGTACAGCAATGTC
Unaligned ( gi|37 ): ATGTACAGGGGCATGTTCACTTTCCTACTGGTACATCATATTACTTCTGCACAATGGTCATCATTTTTGTATCATG
Unaligned ( gi|38 ): GTTATGTTCACTTTCTTGACTCATCTTCAGCATACAATCATTATTTTTGTATTATATGCAAAAACGAAAT
Unaligned ( gi|39 ): AGGTATGTTCACTTTCCCTATAAGTACATCAGTATTGTTCATTAGGTTTTGTATCGTATACAGCAATGT
Unaligned ( gi|40 ): TTTTTCATGTACAATTCAACGTTCACTTTCCTACTGGTACTTCAGCATAACAGTCATTATATATGCAT
Unaligned ( gi|42 ): GTTATACCTTTTCATGCATATAAAGGGTATGTTCACTTTCTTACTGATACTTCACTTCAGCATAA
Unaligned ( gi|43 ): ATAGTTTTGTTCATGCATCAGGGTATATTTAATTTCTTACTGTTACTTCAGCGTAAAAGTAATTT
Unaligned ( gi|45 ): CTTTTTTTTCATGTACGAGGGTATCTTCGTTTTCCTACTGGTACTTCAGCATAACAGTCATTA
Unaligned ( gi|47 ): ATGTACAGAGATATGTTCACTTTCCTACTTCAGCCTAACAGTCATTGACATTAGT
Unaligned ( gi|48 ): AGTAGTATTTCAGCACTACATTCATTATTTTTGTATCATATACAACAATGACATT
Unaligned ( gi|54 ): ACAATGGACCAAGGAGGAGTGCTTTGTAGCTTCTTTCAAATGTGTAGGG
Unaligned ( gi|58 ): ATATTTAGTATTATTGTATCACATACAATAATGG
Alignments
lowQualScore : 11 11111111 111 111 3333333333333333333333333333333333333333333333 11111111 11 111111111 111 1 1111 11111111 1 2222222 11 1111 1 11 1 11 11 1 44444444444444 22222 11
lowQualScore : 1 33 1 22222222 000 33 000 999999999999 33 2 3333333333333333333333333333333333333333333333 555555 33 3 3 55555555 00 999999999 222 66 4 0 5 77 5 5 5 0000 5 3 55 3 666 1 1 4 1 33333333 2 2 2 2 0 4444 0 0 99 6 3 1 6 1111111 8 0 77 1 3 0 0 77 0 1 0 8 1 3 5555 3 3 7 88 1 5 88 88 1 2 5 1 00000000000000 1 1 55555 1 66
lowQualScore : . .. . ........ ... .. ... ............ .. . .............................................. ...... .. . . ........ .. ......... ... .. . . . .. . . . .... . . .. . ... . . . . ........ . . . . . .... . . .. . . . . ....... . . .. . . . . .. . . . . . . .... . . . .. . . .. .. . . . . .............. . . ..... . ..
lowQualScore : 0 88 0 99999999 000 99 555 999999999999 77 7 6666666666666666666666666666666666666666666666 666666 99 1 1 11111111 88 000000000 000 11 4 0 0 55 0 0 0 6666 7 6 55 3 666 0 9 4 1 11111111 5 5 5 5 4 9999 8 5 22 7 3 0 7 2222222 0 8 00 0 2 6 8 00 8 0 8 8 0 2 3333 7 3 3 33 0 5 55 55 0 5 5 0 00000000000000 0 0 55555 0 55
consensus : NTGCANCTCAAAT--ANTTATGTCTCC-----CCTCTTCCA---GG--GG-AAGACAT--TG-------TTT--T-TGTACTTTCTG---T------------C--------CGTC------------C-G--TCT----G-TCTGTCACAA--AATCT-TGTG-AACG----C---TTCTCCTT-TATG----CGGCTTA--TC-GGATAG-AC-T-GAAAC-TTT-GTACA-AT-GCTT----CATTG-CCATTTGTAG-ATGT-TCA-CATTGTTCGGACNGGAGGATCCA---A--T-ATT-TT-C-CT-ACAATTTAC--GATGGACCAAAGAGGAGTGGG--GGG-TGTAAAA-TAGCTT-GTGAACACTTCTCCTA-TATGACTTATCGGATAGACTTGAAACTTTGTACAATGCTTCATTGCCATTCGCAGATGTGCATNTTGTCNGGACAGGAGGATCCAATTATTTTCCTT-AAGTTATGGTAGATCTAAGAGGG-GTAGAGAATGTAAA--AGCCTNTAGAACACTTATCTACTACNTGGCCTACCGGATAGACGCGAGACTTTGTNCAATGCTTTAATANCATTTAATGATGTNCACATTNTCGGGGCAGGAGGGTCCAATTGTTATCCAAAANAAAAGTTNTAGANGATCTAAGAGGTGTGGAGGATGTAAACGTTTCCTATATGGCTTATAGCCTAGCCTTGAAAGTTTGTGTACCAGTCCTGTTTTGTGTTGCATGCAACAATGACAT
Reference ( family-883 ) : NTGCANCTCAAAT--ANTTATGTCTCC-----CCTCTTCCA---GG--GG-AAGACAT--TG-------TTT--T-TGTACTTTCTG---T------------C--------CGTC------------C-G--TCT----G-TCTGTCACAA--AATCT-TGTG-AACG----C---TTCTCCTT-TATG----CGGCTTA--TC-GGATAG-AC-T-GAAAC-TTT-GTACA-AT-GCTT----CATTG-CCATTTGTAG-ATGT-TCA-CATTGTTCGGACNGGAGGATCCA---A--T-ATT-TT-C-CT-ACAATTTAC--GATGGACCAAAGAGGAGTGGG--GGG-TGTAAAA-TAGCTT-GTGAACACTTCTCCTA-TATGACTTATCGGATAGACTTGAAACTTTGTACAATGCTTCATTGCCATTCGCAGATGTGCATNTTGTCNGGACAGGAGGATCCAATTATTTTCCTT-AAGTTATGGTAGATCTAAGAGGG-GTAGAGAATGTAAA--AGCCTNTAGAACACTTATCTACTACNTGGCCTACCGGATAGACGCGAGACTTTGTNCAATGCTTTAATANCATTTAATGATGTNCACATTNTCGGGGCAGGAGGGTCCAATTGTTATCCAAAANAAAAGTTNTAGANGATCTAAGAGGTGTGGAGGATGTAAACGTTTCCTATATGGCTTATAGCCTAGCCTTGAAAGTTTGTGTACCAGTCCTGTTTTGTGTTGCATGCAACAATGACAT
gi|1 : TGCATTTCAAAT--ATTTATTTCTCG-----CCTCTTCCA---GG--GG-AAGACAT--TG-------TTT--T-TGTGCTTACTG---T------------C--------CATC------------C-G--TTT----G-TCTGTCACAA--AATCT-TGTA-AACG----C---TTCTCCTTGTATA----CAGCTTA--TC-GGATAG-AA-T-GTAAC-TTT-GTGCA-AT-GCTT----CATTG-TCAGTTGCAG-AAGT-GAA-TATTTCCTGGCCAGGAGGATACA---A--TTCTT-TT-C-CTTACAGTA-AA--GATGGATCTAAGAGGGATGGA--AGG-TGTAAAAATAGCTT-GTGAACACTTCCCCTA-TATGACTTATCAGATAGACTTGAAACTTTGTACAATGCTTCATTGCTATTTGTAGATGTGCATATTGTCTGGACAGGAGAAATCACTTATTTTCTAT-ACATTATGATGGATCTAAGAGGATGTAAAAAA---AAA--AACCTTTAAAACATTTATC--CTATTTGGCCTATCAGATAGACTTGAAACTT-GTTCAATGCTT-----GCA------GATGTGCATATTCTCGGGGCAGAAGGATCCAATTGTTATCC----TAAAAGTTTTAGAGGATCTAAGAGGTGTGGAGGATGTAAACGTTTCCTATATGGCTTATAGCCTAGCCTTGAAAGTTTGTGTACCAGTCCTGTTTTGTGTTGCATGCAACAATGACAT
gi|10 : tTTATGTCTCC-----CCTCTTCCAT--GGGTGG-CAAACATA-CG--------TT--T-TGTACTTTCTG---T------------A--------TGTT------------C-AGTTCT----A-CCTGTCAC-A--AATCT-TGTGAAACGGGGTC---TCCTCCTG-TATT----TGA---A--T----ATAGAAT-T-GAAAA-ATT-TTACA-GT-GCTTACAACATTG-CCA
gi|11 : G-ATAT-TCA-CATTATTTTAATTGC-GGTTCTA---A--T-ATT-CT-C-GT-AAAATTTAC--AATGGATCAAAAGGGAGTG
gi|12 : G-ATGT-TGA-CATTGTTTTGACCAGAG-ATCTA---A--T-ATT-GT-C-CT-ACAATTTAC--ATTAGATCAAAGAAGAGTGctgtacgcctcttttcatgtatatgggtaagttcaatttatactgctacttcagcatagcagttgtttttgta
gi|13 : gatCA-CATTGTTCT--CTAAAGGATATG---A--A-AAT-TT-C-CC-ACAATTTAC--AGTGGAttatagcttttttcatgtataaggtaatgttcaatttctaactgatacttcaacataacagtcattat
gi|14 : tatgTCCA---CG--GG---GATAT--TGACAAGAGTTT--T-TGTACTTTCTG---G------------C--------C---------------------------G-TCTGTCACAA--AATC--TGTG-AAAC----C---TTCTCC---TAC-----CAGTTT---TC-AAATAG-CCTT-GAAA--TTT-GTA-G-AT-G----------TG-CCATTgtgttttagagctatttcgtgtgcaatattgggtatttgaacaacataacaattcttttttatatcatatacaacaatgaga
gi|19 : TGCAACTTAAATTAAATTATGTC--------CCTCTTCCA---GG--GT---GACAT--T---------TT--T-TCTACTTC--G---T------------C---------GTC------------C-A--TCT----G-TCTGTCA--------CT-TG------------------TCCCC-TATA----CAGTTTG--TC-GGATAG-at
gi|2 : ATAT-AC-TTAAAAC-TTT-GTGCA-AT-GTTT----CATTG-CCATTTATTG-AAGT-GCA-TAATGCTGGAACAGGAGGATTCA---A--TCATT-TTAC-TT-TTAAGTTAC--AGAGGATCTAAGAGGGGTGGGATGGGCTGTTAAA-TATATT-GTGAACACTTCT---A-TATGACTTATCAAAGAGACTTATAACTTTGCACAATGCTTTATTGCCAGTTGCAGAAGTGTATTTTGTCTGGACAGGAGGATCCAATCATTTTCCTTAAAGTTATGGTAGATCTAAGAGGG-ATAGAGTGTGTAAAATAGCCTGT-GAACACT--TCTACTACATGGCTTACTGAATAAATGCGAGACTTTGTACAATACTTTAATATCATTTAATGATGTTCACATTAT
gi|24 : -ATGT-TCA-TATTGTTTGAACTA-AGGGTATA---C--T-ATT-TT-C-GT-AAGAGTTAA--AACGGACCAAGGAGGAGTGtctaaccaagga
gi|27 : -ATGT-TCA-CATTGTTCGAACTATAG--TCAAGAGA--T-ATT-TT-TTCT-ACAATATAC--AGTGGACCAAAGtttagtagctttttttcgtgtggaaagg
gi|28 : G--GG-GAGACAT--TG-------TTT--T-TGTACCCTCTG---T------------C--------CATCAG----------T-G--TCT----C-CCCGTCttttttgtagcttttttcatgcgcaagg
gi|3 : gtaatggattatatcgagtaccaatttccaacccttaatatCTCTTCCA---GG--GC-A-GACATATTG-------TTTAATATGTACTTTCTG---T------------C--------TATC------------C-A--TCT----G-AC----ACAA--AG-CT-GGTG-AAGA----C---TTTTT-TT-TATA----CGGCTTA--TC-AGAGAG-AC-T------------------T-GCTT----CATTG-CCATTTGTAG-ATGT-GCA-TATTGTTAGAACAGGAGGATTCATGCAGTT-ATT-TT-C-CT--CAAGTTAT--GGTGGATCTAAGAGGGGTGGG--AGA-TATTATA-TAGTTT-GTGAATATAT---CTA-TTTGGGTTATTGGATG-----GAAACTATGTATAATGCTGCATTGCTAT---CACATGTACAT-TTGTCAGGACAGAGGGTTCCAATTATTTTCCTT-AA--------AGATCTAAGAGGG-GTGGAGAATGTAAA--A
gi|30 : atgatgctcaacacttgcctttC-----CCTCTTCCA---AT--GG-AA-ACAA--TG-------TTT--G-TGTACTTTCTG---T------------CAGTCAGTTCGTT------------C-G--TCT----G-TCTGGCTCAA--GACCT-TGTA-AAAG----C---TTCTCCt
gi|32 : GGATATA---A--T-AGT-TT-C-CT-ACAATTTAC--AATGGACCAAAGAGGAGT
gi|34 : tgaactacTTATGTCTCT-----CCTCTTCCA---GG--GGTAGGATCT--CA-------GTT--A-TGTGCTTTCTG---C------------C--------TGTC------------------CT----G-TCTGTCACTA--TATCT-TACG-AACG----acgtgttttgtagtttttctcatgtgcaagg
gi|4 : AC--AATTATGTCTCCGGAACTCTGTTCTA---GA--GG-GGGACAT--TG-------TTT--T-TGTACCTTCTG---TACATCGGTCTGTC--------TGTC------------C-A--TCT----G-TCAGTCACAA--AATCT-CGTG-AACG----CGTCTCCTCCTT-TATG----C--CTTA--TC-AGATAG-ACAT-GAAAC-TTG-GTACA-AT-ACTT----CATTT-CCGTTTGTAG-ATAT-GCA-CATTGTCAGGACAGGAGAATCCA---AT-T-ATT-TT-C-CT-A-AAT---C--GA------AGAGAGGGATGGA--GGA-TGTAAAA-TAGCTT-
gi|41 : tataatgcatataagtattgtCTCCTCCA---GG--G--ATTACAT--T---------TT--T-TGTACTTCCTG---T------------C--------------------------A--TTT--------TGTCACAC--AATCT-TCTG-ATCG----C---TTCTCCa
gi|44 : T--TG-------TTT--T-CATACTTTCTG---T------------C--------TGTC------------A-G--GCTTTCAG-TCTGTTTCAA--AATCT-TGTG-AATG----C---TCCTCC
gi|46 : TATGTC--C-----CCTTCCACA---GG--AG-AAGACAT--TC-------ATT--T-TGTACTTGCTG--------------------------GT-------------C-A--TCT----G-TCTGTCACAA--A
gi|49 : TACTTTCTG---T------------C--------CGTCTGTTCACCTAGCC-G--TCT----G-TTTGTCACAA--AATCT-CGTG-AAC
gi|5 : ACAGGAGGATCC----------------------CAAT---C--GTTGGATCTA-GAGG-GTGGG--GGG-TTTAAAAATAGCTTCATGAACATTT-TCC-A-CATGAGT-ATCGGATGACCTTGATA---TGTA---------ATTATCATTCAT-GATGTCTACATTGTTCTGACCAGAGGATCTAA-TATTTTC
gi|50 : CAGGACAGGAGGGTCCAATTGTTATCCAAAAAAAAAGTTATAG-CGATCTAAGAGgatataatctgaagagtgttttatcagttctttcatgtacaagggtatattcacttacctactggttcattcacatagcagttcttattcttgtatcatatcacaataat
gi|51 : TG---T------------G--------CTTC------------CTG--TCT----G-TCTGTCACAA--AATCT-TACC-AACG----G---TTCTCCT
gi|52 : TTTGATG-ATGT-TCA-CATTGTTCTAACCA-AGGATCTA---A--T-ATT-TT-C-GT-ACAATTTcgtataca
gi|53 : TCTA---A--T-ATT-TT-C-CT-ACAATTTACATAATAGATCAAAGAAGAGTG
gi|55 : gtcatagcTAC--AATGGACCAAAGAGGAGTGt
gi|56 : --GG-GAGACAT--TG-------TTT--T-TGTACCTCCTG---T------------C--------CATC------------T-G--TCT----C-CCTGttttgtagctattttcatatgcaagg
gi|57 : --GG-GAGACAT--TG-------TTT--T-TGTACCTCCTG---T------------C--------CATC------------T-G--TCT----C-CCTG
gi|6 : TCTCCTTATATG----AGCTTTAATTC-AATTAA-AC-T-GAAACTTTT-GTACA-ATGGCTT----ATTTGCCCATTTGTAGCATGTGGCATTATCGTCAGGACAGG-GGATCCA---AATC-ATTGTT-C-CT-AAAAGTTAT--GAT-----AAA----------------TATA---------T-GTAAATCC--CTCATATTATGGCTTATGGAATAAACTTGAAACTTT-TACAGTGCTTCA-TGCCAT--GCAGCGGTGC-CCTTGTCAGGA-AGGGGGA
gi|7 : tatatacaG-ATGT-TGA-CATTGTTTTGACCAGAG-ATCGA---A--T-ATT-GT-C-CT-ACAATTTAT--ACTAGACCAAAGAAGAGTG
gi|8 : atCAAGT--ATTTATGTCTCC-----CATCTTCCATTTAG--GA-ACGACAT--AG-------TTT--T-TCTA------GAATT------------C--------CGT---------------G--TCT----GTTCTGTT-CAACCAATCTCCGTG--ACGGTTTC---TCCTCCTC-TATGATCTCCACTT---TCAGGATAG-CT-T-GAAAC-TTTGGTACAGAT-GCTT----CATTttatagcttttctcatgtataagggcaatgccatatgttcactttcttactgatacttcagcataagtcattatttttgtatcatatgcaaatga
gi|9 : ttaTGTTCTGACTAGAG-ATCTA---A--C-ATT-TT-C-CT-ACAGTTTAC--AGTGGTCCCAAGAAGAGT
blockSeqs : A TA A TCCGGAAC TTT GT TAG TGACAAGAGT AA A TACATCGGTCTGTCTGTCCA TTCAG CC C A GGGTC TA GATCTCCAC AAT AG A T T CT G G G ACAA C C GG T TTA T C G T TGCAGTT G A T . ATAA AT C A A C TTTCC T GA T C TT A T T T AAAG G . T AT G . . TA A G T A TAATATCATTTAAT T A AAAAA A C
blockSeqs : . A TCC T . CA ATTGT . . TCCGTCTGTTCACCTAGCCG GT . . . GTTTC G ACAGT A A . A . A . . . . . . T . TTG C G G T GAGAT . . . . AA . . . T . CTCAT . AC A T TC T A A T AA . . T .
blockSeqs : . T TCT . . GA ACG . . TCAGTCAGTTCGTTCG A . . . CGTC C ACGGC G G . . . C . . . . . . T . GGA T A G T AATC . . . . AT . . . C . TTCT . AA T C . T C C .
blockSeqs : TCC . . AA TGT . . TATGTTCAGT G . . . C T GAGCT A A . . . C . . . . . . G . TGA A G G C ATC . . . . AG . . . C . ATCT . . . . . G . A
blockSeqs : C . . GG TGT . . TCCATCAGTG G . . . C T TTGA A A . . . C . . . . . . T . CGA T T G T ATT . . . . AG . . . . .
blockSeqs : . . . AT CAG . . TGCTTCCTG C . . . C C CAGT . A . . . . . . . . . . T . AGA T G G A AT . . . . AA
blockSeqs : . . AA TGT . . AATTCCGTG G . . . C . GCC . . . . . . . . . . . G . AGG A G A C AT . . . . AG
blockSeqs : . . GA TGT . . TCTATCCA G . . . C . . G . CTA A G G T AA . . . . GG
blockSeqs : . . GA TCA . . TCTGTCAG G . . . G . T . AGG A G G C CT . . . . AA
blockSeqs : . . AC TGT . . TCCATCTG G . . . . . T . TTG C G G C AT . . . . GA
blockSeqs : . A TGT . . TCCATCTG G . . . . CTG A G . T AT . . . . GT
blockSeqs : . . AGT . . TCGTCCA G . . . CT C . . T AT . . . . AA
blockSeqs : . . T . . CCTGTC G . T . . C AT . . . . GA
blockSeqs : T . . GTCA C . G AC . . . . AC
blockSeqs : GCC C T . . . . . AG
blockSeqs : TCA .
blockSeqCons : C* AT****** NTCT*** **
originalCons : NTGCANCTCAAAT--ANTTATGTCTCC-----CCTCTTCCA---GG--GG-AAGACAT--TG-------TTT--T-TGTACTTTCTG---T------------C--------CGTC------------C-G--TCT----G-TCTGTCACAA--AATCT-TGTG-AACG----C---TTCTCCTT-TATG----CGGCTTA--TC-GGATAG-AC-T-GAAAC-TTT-GTACA-AT-GCTT----CATTG-CCATTTGTAG-ATGT-TCA-CATTGTTCGGACNGGAGGATCCA---A--T-ATT-TT-C-CT-ACAATTTAC--GATGGACCAAAGAGGAGTGGG--GGG-TGTAAAA-TAGCTT-GTGAACACTTCTCCTA-TATGACTTATCGGATAGACTTGAAACTTTGTACAATGCTTCATTGCCATTCGCAGATGTGCATNTTGTCNGGACAGGAGGATCCAATTATTTTCCTT-AAGTTATGGTAGATCTAAGAGGG-GTAGAGAATGTAAA--AGCCTNTAGAACACTTATCTACTACNTGGCCTACCGGATAGACGCGAGACTTTGTNCAATGCTTTAATANCATTTAATGATGTNCACATTNTCGGGGCAGGAGGGTCCAATTGTTATCCAAAANAAAAGTTNTAGANGATCTAAGAGGTGTGGAGGATGTAAACGTTTCCTATATGGCTTATAGCCTAGCCTTGAAAGTTTGTGTACCAGTCCTGTTTTGTGTTGCATGCAACAATGACAT
finalCons : NTGCANCTCAAAT--ANTTATGTCTCC-----CCTCTTCCA---GG--GG-AAGACAT--TG-------TTT--T-TGTACTTTCTG---T------------C--------CGTC------------C-G--TCT----G-TCTGTCACAA--AATCT-TGTG-AACG----C---TTCTCCTC-TATG----CGGCTTA--TC-GGATAG-AC-T-GAAAC-TTT-GTACA-AT-GCTT----CATTG-CCATTTGTAG-ATGT-TCA-CATTGTTCGGACNGGAGGATCCAAT------ATT-TT-C-CT-ACAATTTAC--GATGGACCAAAGAGGAGTGGG--GGG-TGTAAAA-TAGCTT-GTGAACACNTCT---A-TATGACTTATCGGATAGACTTGAAACTTTGTACAATGCTTCATTGCCAT--GCAGATGTGCATNTTGTCNGGACAGGAGGATCCAATTATTTTCCTT-AAGTTATGGTAGATCTAAGAGGG-GTAGAGAATGTAAA--AGCCTNTAGAACACTTATCTACTACNTGGCCTACCGGATAGACGCGAGACTTTGTNCAATGCTTTAATANCATTTAATGATGTNCACATTNTCGGGGCAGGAGGGTCCAATTGTTATCCAAAANAAAAGTTNTAGANGATCTAAGAGGTGTGGAGGATGTAAACGTTTCCTATATGGCTTATAGCCTAGCCTTGAAAGTTTGTGTACCAGTCCTGTTTTGTGTTGCATGCAACAATGACAT
26 sequences could not be aligned to this reference sequence:
Unaligned ( gi|15 ): AGAAAGTGTCATAGTGTTTTTTTTTTCATGTACAAGAATATTATTCATTCACGTACAAGATATATATGTTCACTTTCCTACTGGTACTTCAGCACAACAGTCATTGTATCATT
Unaligned ( gi|16 ): TAGTGTTTTATAGCTTTTTTTTTTAATGAAGAAAGGTAAGTTTACTTACCTAAGTGGTACTTCAGCATAACAGTCATTATTTTCGTATCATAAACAACGATGGCATT
Unaligned ( gi|17 ): TCAAACAAAAGTGTTTCATCGCTTCTTCATGTAATTAGTTATGTCCAATGTTTCTACTGACACTTCAATATAACAGTCATTATTTTTGTAACATGGCACCAACAT
Unaligned ( gi|18 ): GCTTTATAGCCTTTCTCATGTTGAAAAGTATATTCACTTTCCTACAGGTACAGGTACTTCAGCACACCAGTTGTTATTTTTGTATCATATACATGTAACAA
Unaligned ( gi|20 ): AATGTTTTATAAAATACTCTTTTTTTATGCACAAGGGTATGTTCACTTACTTACTGGTATATCTATATCATTTATTCTTATTAAATCCAACCATGACAT
Unaligned ( gi|21 ): TTATAGCTTTTTTTCATGTACAAGGGTATTTTCTTTTTTCTACTGGTACTTTAGCATAACAGTAACTGTATTTATTTTTTGTATCATATACAACGACA
Unaligned ( gi|22 ): TTATGGCACCGTTGGCATTAAAACTAGGGATATAACATTCCCCTACGAATTACAGTAGACCAACGAGTTGCCCTCTGTAGCTTTCTTCATGTGCAAGG
Unaligned ( gi|23 ): ACACAATTTCAGTGGATAAAGAGAAGAGTTTTCACATACAAGTGTATGCTCACTTTCCTACTAGTACTTCAGCATAACCGTCAGTATACAACAATA
Unaligned ( gi|25 ): TAGCTTTTTCCATGTACAAGGGTAAGTCCACTTTCCTACTGGTACTTAGCAATATTAACTGTCATTATTTTGTATCATACACATCAATGACATT
Unaligned ( gi|26 ): ATAGCTTTTGTTCCTGTATAAGGTTATATTCACTTTCCTACTGGTACTTTAGCATCATAGTCATTAGTTTGGTGTCATACACAACAATGACATT
Unaligned ( gi|29 ): TATAGTTTTTTCATGTATAAGGGTATGTTCACTTTCTTACTGATACTTCAGCATAACAGTCATTATTTTTGTATCATATGCAAATGA
Unaligned ( gi|31 ): CTTTTTCATGTATAAGGATATGCTCACTTTCCTATACTTCAGCATAACATTTACCGGTATCATTACTGTATCATATACAACAATAT
Unaligned ( gi|33 ): TAGCTTCTCATGCACAAGAATATGGTCACTTTCGTATTGGTACATCAGCATAATAACAGTCATTATTTTTGTATCATAATGC
Unaligned ( gi|35 ): GTAGCTCTTTATGTACAAATGTATGTTCATTTTCCCACTGGCCCTTAGCATAACAGTCATTGATATGTATCATACACGA
Unaligned ( gi|36 ): GTAGCTTTGTTCATGAACAAAGGCATGTTCACTTTCCAACTGGAACTTTAAGCATTTTGTATCATGTACAGCAATGTC
Unaligned ( gi|37 ): ATGTACAGGGGCATGTTCACTTTCCTACTGGTACATCATATTACTTCTGCACAATGGTCATCATTTTTGTATCATG
Unaligned ( gi|38 ): GTTATGTTCACTTTCTTGACTCATCTTCAGCATACAATCATTATTTTTGTATTATATGCAAAAACGAAAT
Unaligned ( gi|39 ): AGGTATGTTCACTTTCCCTATAAGTACATCAGTATTGTTCATTAGGTTTTGTATCGTATACAGCAATGT
Unaligned ( gi|40 ): TTTTTCATGTACAATTCAACGTTCACTTTCCTACTGGTACTTCAGCATAACAGTCATTATATATGCAT
Unaligned ( gi|42 ): GTTATACCTTTTCATGCATATAAAGGGTATGTTCACTTTCTTACTGATACTTCACTTCAGCATAA
Unaligned ( gi|43 ): ATAGTTTTGTTCATGCATCAGGGTATATTTAATTTCTTACTGTTACTTCAGCGTAAAAGTAATTT
Unaligned ( gi|45 ): CTTTTTTTTCATGTACGAGGGTATCTTCGTTTTCCTACTGGTACTTCAGCATAACAGTCATTA
Unaligned ( gi|47 ): ATGTACAGAGATATGTTCACTTTCCTACTTCAGCCTAACAGTCATTGACATTAGT
Unaligned ( gi|48 ): AGTAGTATTTCAGCACTACATTCATTATTTTTGTATCATATACAACAATGACATT
Unaligned ( gi|54 ): ACAATGGACCAAGGAGGAGTGCTTTGTAGCTTCTTTCAAATGTGTAGGG
Unaligned ( gi|58 ): ATATTTAGTATTATTGTATCACATACAATAATGG
Alignments
lowQualScore : 11 11111111 111 111 3333333333333333333333333333333333333333333333 1111 2222 111111111 111 1 1 1111 111111 222 22 1111 1 11 1 11 11 1 44444444444444 22222 11
lowQualScore : 1 33 1 22222222 000 33 000 999999999999 33 2 3333333333333333333333333333333333333333333333 555555 33 3 3 4444 3333 777777777 222 66 4 0 5 2 0 5 5 0000 5 3 55 3 666 1 1 4 1 444444 2 2 2 2 2 0 4444 0 0 99 6 6 6 1 6 1 222 8 8 0 77 1 3 0 0 22 5 8 1 0 8 1 3 5555 3 3 7 88 1 5 88 88 1 2 5 1 00000000000000 1 1 55555 1 66
lowQualScore : . .. . ........ ... .. ... ............ .. . .............................................. ...... .. . . .... .... ......... ... .. . . . . . . . .... . . .. . ... . . . . ...... . . . . . . .... . . .. . . . . . . ... . . . .. . . . . .. . . . . . . . .... . . . .. . . .. .. . . . . .............. . . ..... . ..
lowQualScore : 0 88 0 99999999 000 99 555 999999999999 77 7 6666666666666666666666666666666666666666666666 666666 99 1 1 2222 0000 333333333 000 11 4 0 0 5 0 0 0 6666 7 6 22 3 666 0 9 4 1 666666 5 5 5 5 5 1 9999 8 5 22 7 7 7 0 7 0 000 0 0 8 00 0 2 6 8 00 0 0 0 8 8 0 2 3333 7 3 3 33 0 5 55 55 0 5 5 0 00000000000000 0 0 55555 0 55
consensus : NTGCANCTCAAAT--ANTTATGTCTCC-----CCTCTTCCA---GG--GG-AAGACAT--TG-------TTT--T-TGTACTTTCTG---T------------C--------CGTC------------C-G--TCT----G-TCTGTCACAA--AATCT-TGTG-AACG----CTTCTCCTC---TATG----CGGCTTA--TC-GGATAG-AC-T-GAAACTTT-GTACA-ATG-CTT----CATTGCC-ATTTGTAG-ATGTT-CAC-ATTGTTCGGACNGGAGGATCCA---A--T-ATT-TT-C-C-TACAATTTAC--GATGGACCAAAGAGGAGTGGG--GGG-TGT-AAAA-TAGCTT-GTGAACACTT---C-TAT-ATGACTTATCGGATAGACTTGAAACTTTGTACAATGCTTCATTGCCA-TTGCA-GATGTGCATNTTGTCNGGACAGGAGGATCCAATTATTTTCCTT-AAGTTATGGTAGATCTAAGAGGG-GTAGAGAATGTAAA--AGCCTNTAGAACACTTATCTACTACNTGGCCTACCGGATAGACGCGAGACTTTGTNCAATGCTTTAATANCATTTAATGATGTNCACATTNTCGGGGCAGGAGGGTCCAATTGTTATCCAAAANAAAAGTTNTAGANGATCTAAGAGGTGTGGAGGATGTAAACGTTTCCTATATGGCTTATAGCCTAGCCTTGAAAGTTTGTGTACCAGTCCTGTTTTGTGTTGCATGCAACAATGACAT
Reference ( family-883 ) : NTGCANCTCAAAT--ANTTATGTCTCC-----CCTCTTCCA---GG--GG-AAGACAT--TG-------TTT--T-TGTACTTTCTG---T------------C--------CGTC------------C-G--TCT----G-TCTGTCACAA--AATCT-TGTG-AACG----CTTCTCCTC---TATG----CGGCTTA--TC-GGATAG-AC-T-GAAACTTT-GTACA-ATG-CTT----CATTGCC-ATTTGTAG-ATGTT-CAC-ATTGTTCGGACNGGAGGATCCA---A--T-ATT-TT-C-C-TACAATTTAC--GATGGACCAAAGAGGAGTGGG--GGG-TGT-AAAA-TAGCTT-GTGAACACNT---C-TAT-ATGACTTATCGGATAGACTTGAAACTTTGTACAATGCTTCATTGCCA--TGCA-GATGTGCATNTTGTCNGGACAGGAGGATCCAATTATTTTCCTT-AAGTTATGGTAGATCTAAGAGGG-GTAGAGAATGTAAA--AGCCTNTAGAACACTTATCTACTACNTGGCCTACCGGATAGACGCGAGACTTTGTNCAATGCTTTAATANCATTTAATGATGTNCACATTNTCGGGGCAGGAGGGTCCAATTGTTATCCAAAANAAAAGTTNTAGANGATCTAAGAGGTGTGGAGGATGTAAACGTTTCCTATATGGCTTATAGCCTAGCCTTGAAAGTTTGTGTACCAGTCCTGTTTTGTGTTGCATGCAACAATGACAT
gi|1 : TGCATTTCAAAT--ATTTATTTCTCG-----CCTCTTCCA---GG--GG-AAGACAT--TG-------TTT--T-TGTGCTTACTG---T------------C--------CATC------------C-G--TTT----G-TCTGTCACAA--AATCT-TGTA-AACG----CTTCTCCTTG--TATA----CAGCTTA--TC-GGATAG-AA-T-GTAACTTT-GTGCA-ATG-CTT----CATTGTC-AGTTGCAG-AAGTG-AAT-ATTTCCTGGCCAGGAGGATACA---AT-T-CTT-TT-C-CTTACAG-TAAA--GATGGATCTAAGAGGGATGGA--AGG-TGTAAAAA-TAGCTT-GTGAACACTTCCCC-TAT-ATGACTTATCAGATAGACTTGAAACTTTGTACAATGCTTCATTGCTATTTGTA-GATGTGCATATTGTCTGGACAGGAGAAATCACTTATTTTCTAT-ACATTATGATGGATCTAAGAGGATGTAAAAAA---AAA--AACCTTTAAAACATTTATC--CTATTTGGCCTATCAGATAGACTTGAAAC-TTGTTCAATGCTT-----GCA------GATGTGCATATTCTCGGGGCAGAAGGATCCAATTGTTATCC----TAAAAGTTTTAGAGGATCTAAGAGGTGTGGAGGATGTAAACGTTTCCTATATGGCTTATAGCCTAGCCTTGAAAGTTTGTGTACCAGTCCTGTTTTGTGTTGCATGCAACAATGACAT
gi|10 : tTTATGTCTCC-----CCTCTTCCAT--GGGTGG-CAAACATA-CG--------TT--T-TGTACTTTCTG---T------------A--------TGTT------------C-AGTTCT----A-CCTGTCAC-A--AATCT-TGTGAAACGGGGTCTCCTCCTG---TATT----TGA---A--T----ATAGAAT-T-GAAAAATT-TTACA-GTG-CTTACAACATTGCC-A
gi|11 : G-ATATT-CAC-ATTATTTTAATTGC-GGTTCTA---A--T-ATT-CT-C-G-TAAAATTTAC--AATGGATCAAAAGGGAGTG
gi|12 : G-ATGTT-GAC-ATTGTTTTGACCAGAG-ATCTA---A--T-ATT-GT-C-C-TACAATTTAC--ATTAGATCAAAGAAGAGTGctgtacgcctcttttcatgtatatgggtaagttcaatttatactgctacttcagcatagcagttgtttttgta
gi|13 : gat-CAC-ATTGTTCT--CTAAAGGATATG---A--A-AAT-TT-C-C-CACAATTTAC--AGTGGAttatagcttttttcatgtataaggtaatgttcaatttctaactgatacttcaacataacagtcattat
gi|14 : tatgTCCA---CG--GG---GATAT--TGACAAGAGTTT--T-TGTACTTTCTG---G------------C--------C---------------------------G-TCTGTCACAA--AATC--TGTG-AAAC----CTTCTC--C---TAC-----CAGTTT---TC-AAATAG-CCTT-GAAA-TTT-GTA-G-ATG-----------TGCC-ATTgtgttttagagctatttcgtgtgcaatattgggtatttgaacaacataacaattcttttttatatcatatacaacaatgaga
gi|19 : TGCAACTTAAATTAAATTATGTC--------CCTCTTCCA---GG--GT---GACAT--T---------TT--T-TCTACTTC--G---T------------C---------GTC------------C-A--TCT----G-TCTGTCAC--------T-TGT---------------CCCC---TATA----CAGTTTG--TC-GGATAG-at
gi|2 : ATAT-AC-TTAAAACTTT-GTGCA-ATG-TTT----CATTGCC-ATTTATTG-AAGTG-CAT-AATGCTGGAACAGGAGGATTCA---A--TCATT-TTAC-T-TTTAAGTTAC--AGAGGATCTAAGAGGGGTGGGATGGGCTGT-TAAA-TATATT-GTGAACACTT---C-TAT-ATGACTTATCAAAGAGACTTATAACTTTGCACAATGCTTTATTGCCAGTTGCA-GAAGTGTATTTTGTCTGGACAGGAGGATCCAATCATTTTCCTTAAAGTTATGGTAGATCTAAGAGGG-ATAGAGTGTGTAAAATAGCCTGT-GAACACT--TCTACTACATGGCTTACTGAATAAATGCGAGACTTTGTACAATACTTTAATATCATTTAATGATGTTCACATTAT
gi|24 : -ATGTT-CAT-ATTGTTTGAACTA-AGGGTATA---C--T-ATT-TT-C-G-TAAGAGTTAA--AACGGACCAAGGAGGAGTGtctaaccaagga
gi|27 : -ATGTT-CAC-ATTGTTCGAACTATAG--TCAAGAGA--T-ATT-TT-TTC-TACAATATAC--AGTGGACCAAAGtttagtagctttttttcgtgtggaaagg
gi|28 : G--GG-GAGACAT--TG-------TTT--T-TGTACCCTCTG---T------------C--------CATCAG----------T-G--TCT----C-CCCGTCttttttgtagcttttttcatgcgcaagg
gi|3 : gtaatggattatatcgagtaccaatttccaacccttaatatCTCTTCCA---GG--GC-A-GACATATTG-------TTTAATATGTACTTTCTG---T------------C--------TATC------------C-A--TCT----G-AC----ACAA--AG-CT-GGTG-AAGA----CTTTTTTT----TATA----CGGCTTA--TC-AGAGAG-AC-T-----------------TG-CTT----CATTGCC-ATTTGTAG-ATGTG-CAT-ATTGTTAGAACAGGAGGATTCATGCAGTT-ATT-TT-C-C-T-CAAGTTAT--GGTGGATCTAAGAGGGGTGGG--AGA-TAT-TATA-TAGTTT-GTGAATATAT---C-TAT-TTGGGTTATTGGATG-----GAAACTATGTATAATGCTGCATTGCTA--T-CA-CATGTACAT-TTGTCAGGACAGAGGGTTCCAATTATTTTCCTT-AA--------AGATCTAAGAGGG-GTGGAGAATGTAAA--A
gi|30 : atgatgctcaacacttgcctttC-----CCTCTTCCA---AT--GG-AA-ACAA--TG-------TTT--G-TGTACTTTCTG---T------------CAGTCAGTTCGTT------------C-G--TCT----G-TCTGGCTCAA--GACCT-TGTA-AAAG----CTTCTCCt
gi|32 : GGATATA---A--T-AGT-TT-C-C-TACAATTTAC--AATGGACCAAAGAGGAGT
gi|34 : tgaactacTTATGTCTCT-----CCTCTTCCA---GG--GGTAGGATCT--CA-------GTT--A-TGTGCTTTCTG---C------------C--------TGTC------------------CT----G-TCTGTCACTA--TATCT-TACG-AACG----acgtgttttgtagtttttctcatgtgcaagg
gi|4 : AC--AATTATGTCTCCGGAACTCTGTTCTA---GA--GG-GGGACAT--TG-------TTT--T-TGTACCTTCTG---TACATCGGTCTGTC--------TGTC------------C-A--TCT----G-TCAGTCACAA--AATCT-CGTG-AACG----CGTCTCCTCCTTTATG----C--CTTA--TC-AGATAG-ACAT-GAAACTTG-GTACA-ATA-CTT----CATTTCC-GTTTGTAG-ATATG-CAC-ATTGTCAGGACAGGAGAATCCA---AT-T-ATT-TT-C-C-TA-AAT---C--GA------AGAGAGGGATGGA--GGA-TGT-AAAA-TAGCTT-
gi|41 : tataatgcatataagtattgtCTCCTCCA---GG--G--ATTACAT--T---------TT--T-TGTACTTCCTG---T------------C--------------------------A--TTT--------TGTCACAC--AATCT-TCTG-ATCG----CTTCTCCa
gi|44 : T--TG-------TTT--T-CATACTTTCTG---T------------C--------TGTC------------A-G--GCTTTCAG-TCTGTTTCAA--AATCT-TGTG-AATG----CTCCTCC
gi|46 : TATGTC--C-----CCTTCCACA---GG--AG-AAGACAT--TC-------ATT--T-TGTACTTGCTG--------------------------GT-------------C-A--TCT----G-TCTGTCACAA--A
gi|49 : TACTTTCTG---T------------C--------CGTCTGTTCACCTAGCC-G--TCT----G-TTTGTCACAA--AATCT-CGTG-AAC
gi|5 : ACAGGAGGATCC----------------------CAAT---C--GTTGGATCTA-GAGG-GTGGG--GGG-TTT-AAAAATAGCTTCATGAACATTTT--C-CAC-ATGAGT-ATCGGATGACCTTGATA---TGTA---------ATTATCA--TTCATGATGTCTACATTGTTCTGACCAGAGGATCTAA-TATTTTC
gi|50 : CAGGACAGGAGGGTCCAATTGTTATCCAAAAAAAAAGTTATAG-CGATCTAAGAGgatataatctgaagagtgttttatcagttctttcatgtacaagggtatattcacttacctactggttcattcacatagcagttcttattcttgtatcatatcacaataat
gi|51 : TG---T------------G--------CTTC------------CTG--TCT----G-TCTGTCACAA--AATCT-TACC-AACG----GTTCTCCTCG--TATA----C
gi|52 : TTTGATG-ATGTT-CAC-ATTGTTCTAACCA-AGGATCTA---A--T-ATT-TT-C-G-TACAATTTa
gi|53 : TCTA---A--T-ATT-TT-C-C-TACAATTTACATAATAGATCAAAGAAGAGTG
gi|55 : gtcatagcTAC--AATGGACCAAAGAGGAGTGt
gi|56 : --GG-GAGACAT--TG-------TTT--T-TGTACCTCCTG---T------------C--------CATC------------T-G--TCT----C-CCTGttttgtagctattttcatatgcaagg
gi|57 : --GG-GAGACAT--TG-------TTT--T-TGTACCTCCTG---T------------C--------CATC------------T-G--TCT----C-CCTG
gi|6 : TCTCCTTA--TATG----AGCTTTAATTC-AATTAA-AC-T-GAAACTTTTGTACA-ATGGCTT----ATTTGCCCATTTGTAGCATGTGGCATTATCGTCAGGACAGG-GGATCCA---AATC-ATTGTT-C-C-TAAAAGTTAT--GAT-----AAA----------------TAT-A---------T-GTAAATCCCT---CATATTATGGCTTATGGAATAAACTTGAAACTTT-TACAGTGCTTCA-TGCCA--TGCA-GCGGTGC-CCTTGTCAGGA-AGGGGGA
gi|7 : tatatacaG-ATGTT-GAC-ATTGTTTTGACCAGAG-ATCGA---A--T-ATT-GT-C-C-TACAATTTAT--ACTAGACCAAAGAAGAGTG
gi|8 : atCAAGT--ATTTATGTCTCC-----CATCTTCCATTTAG--GA-ACGACAT--AG-------TTT--T-TCTA------GAATT------------C--------CGT---------------G--TCT----GTTCTGTT-CAACCAATCTCCGTG--ACGGTTTCTCCTCCTC---TATGATCTCCACTT---TCAGGATAG-CT-T-GAAACTTTGGTACAGATG-CTT----CATTttatagcttttctcatgtataagggcaatgccatatgttcactttcttactgatacttcagcataagtcattatttttgtatcatatgcaaatga
gi|9 : ttaTGTTCTGACTAGAG-ATCTA---A--C-ATT-TT-C-C-TACAGTTTAC--AGTGGTCCCAAGAAGAGT
26 sequences could not be aligned to this reference sequence:
Unaligned ( gi|15 ): AGAAAGTGTCATAGTGTTTTTTTTTTCATGTACAAGAATATTATTCATTCACGTACAAGATATATATGTTCACTTTCCTACTGGTACTTCAGCACAACAGTCATTGTATCATT
Unaligned ( gi|16 ): TAGTGTTTTATAGCTTTTTTTTTTAATGAAGAAAGGTAAGTTTACTTACCTAAGTGGTACTTCAGCATAACAGTCATTATTTTCGTATCATAAACAACGATGGCATT
Unaligned ( gi|17 ): TCAAACAAAAGTGTTTCATCGCTTCTTCATGTAATTAGTTATGTCCAATGTTTCTACTGACACTTCAATATAACAGTCATTATTTTTGTAACATGGCACCAACAT
Unaligned ( gi|18 ): GCTTTATAGCCTTTCTCATGTTGAAAAGTATATTCACTTTCCTACAGGTACAGGTACTTCAGCACACCAGTTGTTATTTTTGTATCATATACATGTAACAA
Unaligned ( gi|20 ): AATGTTTTATAAAATACTCTTTTTTTATGCACAAGGGTATGTTCACTTACTTACTGGTATATCTATATCATTTATTCTTATTAAATCCAACCATGACAT
Unaligned ( gi|21 ): TTATAGCTTTTTTTCATGTACAAGGGTATTTTCTTTTTTCTACTGGTACTTTAGCATAACAGTAACTGTATTTATTTTTTGTATCATATACAACGACA
Unaligned ( gi|22 ): TTATGGCACCGTTGGCATTAAAACTAGGGATATAACATTCCCCTACGAATTACAGTAGACCAACGAGTTGCCCTCTGTAGCTTTCTTCATGTGCAAGG
Unaligned ( gi|23 ): ACACAATTTCAGTGGATAAAGAGAAGAGTTTTCACATACAAGTGTATGCTCACTTTCCTACTAGTACTTCAGCATAACCGTCAGTATACAACAATA
Unaligned ( gi|25 ): TAGCTTTTTCCATGTACAAGGGTAAGTCCACTTTCCTACTGGTACTTAGCAATATTAACTGTCATTATTTTGTATCATACACATCAATGACATT
Unaligned ( gi|26 ): ATAGCTTTTGTTCCTGTATAAGGTTATATTCACTTTCCTACTGGTACTTTAGCATCATAGTCATTAGTTTGGTGTCATACACAACAATGACATT
Unaligned ( gi|29 ): TATAGTTTTTTCATGTATAAGGGTATGTTCACTTTCTTACTGATACTTCAGCATAACAGTCATTATTTTTGTATCATATGCAAATGA
Unaligned ( gi|31 ): CTTTTTCATGTATAAGGATATGCTCACTTTCCTATACTTCAGCATAACATTTACCGGTATCATTACTGTATCATATACAACAATAT
Unaligned ( gi|33 ): TAGCTTCTCATGCACAAGAATATGGTCACTTTCGTATTGGTACATCAGCATAATAACAGTCATTATTTTTGTATCATAATGC
Unaligned ( gi|35 ): GTAGCTCTTTATGTACAAATGTATGTTCATTTTCCCACTGGCCCTTAGCATAACAGTCATTGATATGTATCATACACGA
Unaligned ( gi|36 ): GTAGCTTTGTTCATGAACAAAGGCATGTTCACTTTCCAACTGGAACTTTAAGCATTTTGTATCATGTACAGCAATGTC
Unaligned ( gi|37 ): ATGTACAGGGGCATGTTCACTTTCCTACTGGTACATCATATTACTTCTGCACAATGGTCATCATTTTTGTATCATG
Unaligned ( gi|38 ): GTTATGTTCACTTTCTTGACTCATCTTCAGCATACAATCATTATTTTTGTATTATATGCAAAAACGAAAT
Unaligned ( gi|39 ): AGGTATGTTCACTTTCCCTATAAGTACATCAGTATTGTTCATTAGGTTTTGTATCGTATACAGCAATGT
Unaligned ( gi|40 ): TTTTTCATGTACAATTCAACGTTCACTTTCCTACTGGTACTTCAGCATAACAGTCATTATATATGCAT
Unaligned ( gi|42 ): GTTATACCTTTTCATGCATATAAAGGGTATGTTCACTTTCTTACTGATACTTCACTTCAGCATAA
Unaligned ( gi|43 ): ATAGTTTTGTTCATGCATCAGGGTATATTTAATTTCTTACTGTTACTTCAGCGTAAAAGTAATTT
Unaligned ( gi|45 ): CTTTTTTTTCATGTACGAGGGTATCTTCGTTTTCCTACTGGTACTTCAGCATAACAGTCATTA
Unaligned ( gi|47 ): ATGTACAGAGATATGTTCACTTTCCTACTTCAGCCTAACAGTCATTGACATTAGT
Unaligned ( gi|48 ): AGTAGTATTTCAGCACTACATTCATTATTTTTGTATCATATACAACAATGACATT
Unaligned ( gi|54 ): ACAATGGACCAAGGAGGAGTGCTTTGTAGCTTCTTTCAAATGTGTAGGG
Unaligned ( gi|58 ): ATATTTAGTATTATTGTATCACATACAATAATGG