lowQualScore : 222 111111111111111
lowQualScore : 333 666 1 222222222222222 3 1 1 1 1
lowQualScore : ... ... . ............... . . . . .
lowQualScore : 222 111 7 666666666666666 5 7 7 7 7
consensus : AGCGAGCT---CGTCCGCGTCGCTTCGCG-A---------------CGCG-A-GC-T-TC-GCTCGCTAT
Reference ( gi|6 ) : AGCGAGCT---CGTCCGCGTCGCTTCGCG-A---------------CGCG-A-GC-T-TC-GCTCGCTATC
gi|4 : AGCGACCT---CG-CCGCGTCGCTTCGCG-A---------------CGCG-A-GC-T-TCTGCTCGCTA
gi|9 : AGAGAGCT---CATC-GCGTCGCTTCTTG-A---------------CGCG-A-GC-T-TC-GCTCGCTATata
gi|8 : AGCGAGTC---CG-CCGCGTCGCTTCGCGAA---------------CGCGCA-GC-T-TC-GCTCGCTATac
gi|7 : AGCGAGCT---CG-ATGCGTCGCTTCGGG-A---------------CACG-A-GC-T-TT-GCTCACTAT
gi|2 : gAGCGAGCT---CGTC-GCGTCGCTTCGCG-AGCTACGCGTCGCTTCCGCG-A-GC-T-TC-GCTCGCTa
gi|3 : AGCGAGCT---TGTT-GTGTAGCTTCACG-A---------------CGCG-A-GA-T-TT-GCTCGCTAT
gi|10 : AGCGAGTT---CA-CTGCATCACTTTGCG-A---------------CGCG-G-GC-T-TC-GCTTGCTATtat
gi|21 : AGCGAGCT---CGTC-GCGTCGCTTTGCG-A---------------C-------C-T-TC-GCTCACTAt
gi|11 : AGCGAGAT---CATC-GCGTCGCAAAGCG-A---------------CGCG-C-GC-T-TC-GCTCGCTATata
gi|11 : AGCGAGCGAAGCG--CGCGTCGCTTTGCG-A---------------CGCG-ATGA-TCTC-GCTa
gi|16 : AGCGAGCT---TGTT-GTGTAGCTTCACG-A---------------CGCG-A-GA-T-T--GCTCGCTATata
gi|19 : AGTGAGCT---CGTC-GCATCGCTTTGCG-A---------------CGTG-A-GC-T-TC-AATTGCT
gi|24 : AGCGAGCT----G-CCGCGTCGCTTCGCG-A----------------GC--A-GC-T-TC-GCTC
gi|22 : AGCGAGCT---CG-CCGCGT----------A---------------CGCG-A-GC-T-TC-GCTCGCTA
gi|14 : AGCGAGCT---TGTTT-TGTAGCTTCACG-A---------------CGCG-A-GA-T-T--GCTCGCTATcta
gi|5 : gAACGAGTT---CG-CCGCATCACTGCGCG-A---------------CGCA-A-GC-T-GT-GCATGCTAT
gi|23 : AGCGAGCT---------CGTCGCTTCG-A-A---------------CCCA-A-GC-T-TC-GATCGCTaaa
gi|15 : GCGAGCT---CG-CCGCGTCGCTTCGCG-A---------------CGCG-A-GC-T-TC-GCTCGCTAT
gi|13 : GCGAGCT---CG-CCGCGTCGCTTCGCG-A---------------CGCG-A-GC-T-TC-GCTCGCTAT
gi|12 : GCGAGCT---CG-CCGCGTCGCTTCGCG-A---------------CGCG-A-GC-T-TC-GCTCGCTATt
gi|17 : GAGCT---CGTC-GCATTGCTATGTG-A---------------CGTG-A-GC-T-TC-GCTt
gi|20 : tGCT---CG--CGCGTCGCTTCGCA-AT--------------CGCGAA-GCTT-TC-GCTCGCTATaaatgct
gi|18 : CACGTCGCTTTGCA-A---------------CACA-A-GC-T-TT-GCTCACTATt
1 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|1 ): GAACAAGCTTGTCATGTTGCTTCACAATGCGAGCAAACGTGAGCTTTGCTCGCCATTATATACA
Alignments
lowQualScore : 2222 111111111111111
lowQualScore : 3333 1 222222222222222 3 1 1
lowQualScore : .... . ............... . . .
lowQualScore : 9999 7 666666666666666 5 7 7
consensus : AGCGAGCTCG-TCCGCGTCGCTTCGCG-A---------------CGCG-AGC-TTC-GCTCGCTAT
Reference ( family-880 ) : AGCGAGCTCG-TCCGCGTCGCTTCGCG-A---------------CGCG-AGC-TTC-GCTCGCTAT
gi|10 : AGCGAGTTCA--CTGCATCACTTTGCG-A---------------CGCG-GGC-TTC-GCTTGCTAT
gi|11 : AGCGAGATCA-TC-GCGTCGCAAAGCG-A---------------CGCG-CGC-TTC-GCTCGCTATt
gi|12 : GCGAGCTCG--CCGCGTCGCTTCGCG-A---------------CGCG-AGC-TTC-GCTCGCTATa
gi|13 : GCGAGCTCG--CCGCGTCGCTTCGCG-A---------------CGCG-AGC-TTC-GCTCGCTATt
gi|14 : AGCGAGCTTG-TTT-TGTAGCTTCACG-A---------------CGCG-AGA-TT--GCTCGCTATt
gi|15 : gGCGAGCTCG--CCGCGTCGCTTCGCG-A---------------CGCG-AGC-TTC-GCTCGCTAT
gi|16 : AGCGAGCTTG-TT-GTGTAGCTTCACG-A---------------CGCG-AGA-TT--GCTCGCTAT
gi|17 : GAGCTCG-TC-GCATTGCTATGTG-A---------------CGTG-AGC-TTC-GCT
gi|18 : tCACGTCGCTTTGCA-A---------------CACA-AGC-TTT-GCTCACTATaaatgct
gi|19 : tggagcgatAGTGAGCTCG-TC-GCATCGCTTTGCG-A---------------CGTG-AGC-TTC-AATTGCTg
gi|2 : AGCGAGCTCG-TC-GCGTCGCTTCGCG-AGCTACGCGTCGCTTCCGCG-AGC-TTC-GCTCGCT
gi|20 : GCTCG---CGCGTCGCTTCGCA-AT--------------CGCGAAGCTTTC-GCTCGCTAT
gi|21 : AGCGAGCTCG-TC-GCGTCGCTTTGCG-A---------------C------C-TTC-GCTCACTAt
gi|22 : AGCGAGCTCG--CCGCGT----------A---------------CGCG-AGC-TTC-GCTCGCTAata
gi|23 : AGCGAGCT-------CGTCGCTTCG-A-A---------------CCCA-AGC-TTC-GATCGCTcta
gi|24 : AGCGAGCT-G--CCGCGTCGCTTCGCG-A----------------GC--AGC-TTC-GCTC
gi|3 : AGCGAGCTTG-TT-GTGTAGCTTCACG-A---------------CGCG-AGA-TTT-GCTCGCTAT
gi|4 : AGCGACCTCG--CCGCGTCGCTTCGCG-A---------------CGCG-AGC-TTCTGCTCGCTAtat
gi|5 : AACGAGTTCG--CCGCATCACTGCGCG-A---------------CGCA-AGC-TGT-GCATGCTATata
gi|6 : AGCGAGCTCG-TCCGCGTCGCTTCGCG-A---------------CGCG-AGC-TTC-GCTCGCTATaaa
gi|7 : AGCGAGCTCGAT--GCGTCGCTTCGGG-A---------------CACG-AGC-TTT-GCTCACTATc
gi|8 : gAGCGAGTCCG--CCGCGTCGCTTCGCGAA---------------CGCGCAGC-TTC-GCTCGCTATa
gi|9 : AGAGAGCTCA-TC-GCGTCGCTTCTTG-A---------------CGCG-AGC-TTC-GCTCGCTAT
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|1 ): GAACAAGCTTGTCATGTTGCTTCACAATGCGAGCAAACGTGAGCTTTGCTCGCCATTATATACA
Alignments
lowQualScore : 2222 111111111111111
lowQualScore : 3333 1 222222222222222 3 1 1
lowQualScore : .... . ............... . . .
lowQualScore : 9999 7 666666666666666 5 7 7
consensus : AGCGAGCTCG-TCCGCGTCGCTTCGCG-A---------------CGCG-AGC-TTC-GCTCGCTAT
Reference ( family-880 ) : AGCGAGCTCG-TCCGCGTCGCTTCGCG-A---------------CGCG-AGC-TTC-GCTCGCTAT
gi|10 : AGCGAGTTCA--CTGCATCACTTTGCG-A---------------CGCG-GGC-TTC-GCTTGCTAT
gi|11 : AGCGAGATCA-TC-GCGTCGCAAAGCG-A---------------CGCG-CGC-TTC-GCTCGCTATt
gi|12 : GCGAGCTCG--CCGCGTCGCTTCGCG-A---------------CGCG-AGC-TTC-GCTCGCTATa
gi|13 : GCGAGCTCG--CCGCGTCGCTTCGCG-A---------------CGCG-AGC-TTC-GCTCGCTATt
gi|14 : AGCGAGCTTG-TTT-TGTAGCTTCACG-A---------------CGCG-AGA-TT--GCTCGCTATt
gi|15 : gGCGAGCTCG--CCGCGTCGCTTCGCG-A---------------CGCG-AGC-TTC-GCTCGCTAT
gi|16 : AGCGAGCTTG-TT-GTGTAGCTTCACG-A---------------CGCG-AGA-TT--GCTCGCTAT
gi|17 : GAGCTCG-TC-GCATTGCTATGTG-A---------------CGTG-AGC-TTC-GCT
gi|18 : tCACGTCGCTTTGCA-A---------------CACA-AGC-TTT-GCTCACTATaaatgct
gi|19 : tggagcgatAGTGAGCTCG-TC-GCATCGCTTTGCG-A---------------CGTG-AGC-TTC-AATTGCTg
gi|2 : AGCGAGCTCG-TC-GCGTCGCTTCGCG-AGCTACGCGTCGCTTCCGCG-AGC-TTC-GCTCGCT
gi|20 : GCTCG---CGCGTCGCTTCGCA-AT--------------CGCGAAGCTTTC-GCTCGCTAT
gi|21 : AGCGAGCTCG-TC-GCGTCGCTTTGCG-A---------------C------C-TTC-GCTCACTAt
gi|22 : AGCGAGCTCG--CCGCGT----------A---------------CGCG-AGC-TTC-GCTCGCTAata
gi|23 : AGCGAGCT-------CGTCGCTTCG-A-A---------------CCCA-AGC-TTC-GATCGCTcta
gi|24 : AGCGAGCT-G--CCGCGTCGCTTCGCG-A----------------GC--AGC-TTC-GCTC
gi|3 : AGCGAGCTTG-TT-GTGTAGCTTCACG-A---------------CGCG-AGA-TTT-GCTCGCTAT
gi|4 : AGCGACCTCG--CCGCGTCGCTTCGCG-A---------------CGCG-AGC-TTCTGCTCGCTAtat
gi|5 : AACGAGTTCG--CCGCATCACTGCGCG-A---------------CGCA-AGC-TGT-GCATGCTATata
gi|6 : AGCGAGCTCG-TCCGCGTCGCTTCGCG-A---------------CGCG-AGC-TTC-GCTCGCTATaaa
gi|7 : AGCGAGCTCGAT--GCGTCGCTTCGGG-A---------------CACG-AGC-TTT-GCTCACTATc
gi|8 : gAGCGAGTCCG--CCGCGTCGCTTCGCGAA---------------CGCGCAGC-TTC-GCTCGCTATa
gi|9 : AGAGAGCTCA-TC-GCGTCGCTTCTTG-A---------------CGCG-AGC-TTC-GCTCGCTAT
blockSeqs : TTT A GCTACGCGTCGCTTC A T T
blockSeqs : TCC . T C . .
blockSeqs : TC . . . . .
blockSeqs : CC . . . . .
blockSeqs : CC . . . . .
blockSeqs : CC . . . . .
blockSeqs : TT . . . . .
blockSeqs : TC . . . . .
blockSeqs : TC . . . . .
blockSeqs : TC . . . . .
blockSeqs : TC . . . . .
blockSeqs : CC . . . . .
blockSeqs : CC . . . . .
blockSeqs : TT . . . . .
blockSeqs : CC . . . . .
blockSeqs : CC . . . . .
blockSeqs : AT . . . . .
blockSeqs : CC . . . . .
blockSeqs : TC . . . . .
blockSeqs : C . . . . .
blockSeqs : . . . . . .
blockSeqs : . . . . .
blockSeqCons :
originalCons : AGCGAGCTCG-TCCGCGTCGCTTCGCG-A---------------CGCG-AGC-TTC-GCTCGCTAT
finalCons : AGCGAGCTCG-TCCGCGTCGCTTCGCG-A---------------CGCG-AGC-TTC-GCTCGCTAT
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|1 ): GAACAAGCTTGTCATGTTGCTTCACAATGCGAGCAAACGTGAGCTTTGCTCGCCATTATATACA
Alignments
lowQualScore : 2222 111111111111111
lowQualScore : 3333 1 222222222222222 3 1 1
lowQualScore : .... . ............... . . .
lowQualScore : 9999 7 666666666666666 5 7 7
consensus : AGCGAGCTCG-TCCGCGTCGCTTCGCG-A---------------CGCG-AGC-TTC-GCTCGCTAT
Reference ( family-880 ) : AGCGAGCTCG-TCCGCGTCGCTTCGCG-A---------------CGCG-AGC-TTC-GCTCGCTAT
gi|10 : AGCGAGTTCA--CTGCATCACTTTGCG-A---------------CGCG-GGC-TTC-GCTTGCTAT
gi|11 : AGCGAGATCA-TC-GCGTCGCAAAGCG-A---------------CGCG-CGC-TTC-GCTCGCTATt
gi|12 : GCGAGCTCG--CCGCGTCGCTTCGCG-A---------------CGCG-AGC-TTC-GCTCGCTATa
gi|13 : GCGAGCTCG--CCGCGTCGCTTCGCG-A---------------CGCG-AGC-TTC-GCTCGCTATt
gi|14 : AGCGAGCTTG-TTT-TGTAGCTTCACG-A---------------CGCG-AGA-TT--GCTCGCTATt
gi|15 : gGCGAGCTCG--CCGCGTCGCTTCGCG-A---------------CGCG-AGC-TTC-GCTCGCTAT
gi|16 : AGCGAGCTTG-TT-GTGTAGCTTCACG-A---------------CGCG-AGA-TT--GCTCGCTAT
gi|17 : GAGCTCG-TC-GCATTGCTATGTG-A---------------CGTG-AGC-TTC-GCT
gi|18 : tCACGTCGCTTTGCA-A---------------CACA-AGC-TTT-GCTCACTATaaatgct
gi|19 : tggagcgatAGTGAGCTCG-TC-GCATCGCTTTGCG-A---------------CGTG-AGC-TTC-AATTGCTg
gi|2 : AGCGAGCTCG-TC-GCGTCGCTTCGCG-AGCTACGCGTCGCTTCCGCG-AGC-TTC-GCTCGCT
gi|20 : GCTCG---CGCGTCGCTTCGCA-AT--------------CGCGAAGCTTTC-GCTCGCTAT
gi|21 : AGCGAGCTCG-TC-GCGTCGCTTTGCG-A---------------C------C-TTC-GCTCACTAt
gi|22 : AGCGAGCTCG--CCGCGT----------A---------------CGCG-AGC-TTC-GCTCGCTAata
gi|23 : AGCGAGCT-------CGTCGCTTCG-A-A---------------CCCA-AGC-TTC-GATCGCTcta
gi|24 : AGCGAGCT-G--CCGCGTCGCTTCGCG-A----------------GC--AGC-TTC-GCTC
gi|3 : AGCGAGCTTG-TT-GTGTAGCTTCACG-A---------------CGCG-AGA-TTT-GCTCGCTAT
gi|4 : AGCGACCTCG--CCGCGTCGCTTCGCG-A---------------CGCG-AGC-TTCTGCTCGCTAtat
gi|5 : AACGAGTTCG--CCGCATCACTGCGCG-A---------------CGCA-AGC-TGT-GCATGCTATata
gi|6 : AGCGAGCTCG-TCCGCGTCGCTTCGCG-A---------------CGCG-AGC-TTC-GCTCGCTATaaa
gi|7 : AGCGAGCTCGAT--GCGTCGCTTCGGG-A---------------CACG-AGC-TTT-GCTCACTATc
gi|8 : gAGCGAGTCCG--CCGCGTCGCTTCGCGAA---------------CGCGCAGC-TTC-GCTCGCTATa
gi|9 : AGAGAGCTCA-TC-GCGTCGCTTCTTG-A---------------CGCG-AGC-TTC-GCTCGCTAT
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|1 ): GAACAAGCTTGTCATGTTGCTTCACAATGCGAGCAAACGTGAGCTTTGCTCGCCATTATATACA