lowQualScore : 111111111111111111111111111111111111111111 333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 111111111111111111111111111
lowQualScore : 1111 11111 444 1111 111 333333333333333333333 111111 77777777777777777777777777777777777777777777777777777777777777 11111 1111 3333333 222 77777777777777777777777 111 1 111111111111111111111111111111111111111111 33 333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 1 777777777777777777777777777 22 1 444 33333333333333333 8888888888888888888888 22222 111 1 44444444 4 4 2 1111 111 2222222 3333 22222 2222 1 000000000000000000000000000 666666666666666666666666666666666666666 111 22222 11 99999999999999999 11 22222 1 1 555555555555555 8888888888888888888888888 3 111 1 33333333 11 1 33 1 11 222 1 11 11 222222 11 44444444444444444 11 333333 11 2 1 11 2222 11111 11 1111 33 22 5555 333 11 1 111 1 1 44 1 1111111 1 1 3333333333 1 3 11111111 1111 11 1111 33 33 3333
lowQualScore : 2 8888 5 2 2 2 2 2 22222 777777 2 2 888 2 999 2 2 1111 2 444 6 2 2 444 5 99999999 5 555 2 555 2 2 3 55 2 5 555 444444444444444444444 444444 00000000000000000000000000000000000000000000000000000000000000 99 0 11111 3 77 6666 55 7777 1 1 1111111 8 555 0 3 44444444444444444444444 3 333 8 3 0 2 0 333333333333333333333333333333333333333333 77 333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 3 666666666666666666666666666 00 3 333 99999999999999999 9999999999999999999999 55555 777 6 0 2 0 99999999 0 0 6 9 4 8 7777 444 6666666 2222 00000 1111 6 8 5 8 555555555555555555555555555 0 111111111111111111111111111111111111111 3 888 5 44444 11 11111111111111111 11 11111 5 3 2 0 0 3 888888888888888 3 22 7777777777777777777777777 2 0 777 0 3 77 3 2 1 55555555 22 0 33 00 0 6 88 6 333 3 33 33 777777 0 11 00000000000000000 11 8 8 8 8 8 8 0 555555 11 0 8 0 0 11 8 0000 0 22222 8 0 11 8 8888 33 00 1111 666 3 33 3 0 0 777 0 0 33 0 0 55 7777777 2 0 9 0 0 5555555555 8 8 4 1 2 2 2 0 777 5 00000000 555 2 2 7 2 1111 44 999 2 2 66666 2 777777 33 2222 66 2 2 55 2 2 11 66 33 5555 8
lowQualScore : . .... . . . . . . ..... ...... . . ... . ... . . .... . ... . . . ... . ........ . ... . ... . . . .. . . ... ..................... ...... .............................................................. .. . ..... . .. .... .. .... . . ....... . ... . . ....................... . ... . . . . . .......................................... .. .................................................................................................................................... . ........................... .. . ... ................. ...................... ..... ... . . . . ........ . . . . . . .... ... ....... .... ..... .... . . . . ........................... . ....................................... . ... . ..... .. ................. .. ..... . . . . . . ............... . .. ......................... . . ... . . .. . . . ........ .. . .. .. . . .. . ... . .. .. ...... . .. ................. .. . . . . . . . ...... .. . . . . .. . .... . ..... . . .. . .... .. .. .... ... . .. . . . ... . . .. . . .. ....... . . . . . .......... . . . . . . . . ... . ........ ... . . . . .... .. ... . . ..... . ...... .. .... .. . . .. . . .. .. .. .... .
lowQualScore : 7 2222 3 7 7 7 7 5 55555 222222 5 5 444 5 333 7 7 3333 7 777 9 7 7 777 3 77777777 3 000 9 111 9 9 6 00 6 0 999 999999999999999999999 444444 44444444444444444444444444444444444444444444444444444444444444 33 1 00000 0 99 7777 99 9999 0 7 6666666 0 000 8 2 88888888888888888888888 2 555 0 2 5 5 7 777777777777777777777777777777777777777777 77 000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 3 333333333333333333333333333 77 3 777 00000000000000000 3333333333333333333333 22222 555 0 0 5 8 33333333 0 0 5 0 0 0 0000 000 0000000 6666 00000 2222 5 0 0 0 888888888888888888888888888 8 444444444444444444444444444444444444444 8 000 0 66666 00 22222222222222222 00 00000 0 2 5 0 0 2 000000000000000 2 88 0000000000000000000000000 2 0 555 5 2 22 2 5 2 88888888 55 0 22 22 0 7 33 7 333 3 55 88 000000 8 00 22222222222222222 00 0 0 0 0 0 0 8 888888 00 0 0 6 8 00 0 2222 8 00000 0 8 00 0 0000 88 00 7777 777 2 88 5 2 0 555 0 0 00 8 0 88 2222222 5 0 8 0 8 0000000000 0 1 0 3 9 9 9 4 999 7 44444444 000 9 9 7 7 3333 33 333 5 5 22222 5 222222 66 6666 99 5 7 77 7 7 33 33 77 0000 3
consensus : AGCGAATT-ACA---AAAGA-CCGGT-A-GAGTTTT-CAA-TTG-CC-----TGCTAG------A-TTG-AT-CAATAGA-CT---TTA-CAAT-TT----G-G---TCAGCAAAG-ATTCA-CATTT---GGTCTG-A--------ATT-TAGGT---CA-CA-G-AGTT-ACTC-AGG-T--ATGACAATGAAGTGACNACCTTTTCC-CCAG-TGT---G---G-----TG------TGTTTA------TG-----ATTAT-T------AATC-AT-TTTG-TTTCA-A--T--G--T-CGTG-T-TTACA-TATTT-CTATGATTCA--GA-TTAGT--C-AG-TA-A----TCAGGGCATTA--NT---TAA-TTTA-AAAAAAGAATTA-----AAT--CGGCN--------GTCAGGN--TATTGTA-GTATAGGAATGTTTGCACGTACA--GTATT---A-CTTAAATGATTTTTC--C-GC--TTTC-AGTATTTT-AAAAATATAATGC------------GTG--------TAC-----------AACCT-TTCAGATGTGCTTTC--A-------------A------------------GATTTT--ATCACGGAA--G--------TGG-G-A----TTTTAGTTTTCATTCT-TTAATTTG----AAAGGGGG-T--GG--GG-TGA-TTTAAT-TTTTG-CCTCTG-A-CTACTATTTTCATGTGCTGAAA-T-GATT-ATATTAT-ATGAT--ATTA--AATTG--TAGGTA-TACTTCTTTTGGGTN----AAATGGAAAG---AAACCAT-TCTTTTCTGATGGAGATTATGCTGACTGCAAAT-TCCATCGTGTACTAATCTTTGGA-ACAAACGG----GG---TTTCTGAAT-------AACTTA-T-TGGCAAT-----CTTCAAATTGTCTGAAGATA----TACACGAAACATTAGG-TCGACCAAGT-ATTT--T-TTTTCCATAATTC-ATATTTGG-ATGTCCATCTTGT-------CCACTGGC--AA--TAAC--GCA-TT---T-AATTTGCTGAA-CAATACAACACT-C-A-GTTTT--CCCGATT--ACATGTATTTCA-G-AAAGGAAT--TTCC-T---CATTGTAAAGGTCAATAATTTCTNTCTTT-GTTT-CTTCAAAAATTTCCTTTTCCATTTCTAAAATATCTCCCCAACT-----------------T-----A-TAAGCTGAATAGG---TGTAAAATTAACGAAGAAATACACTGCTGGGAAGATAAGTA-------TTGA-NC-AAGCCCAAAAAC-TATAAATA-CTGAAAGGC--TTGCCTAGA---ATA-GCATGAATTCTATT--GGTC--A--GGCATTAAC--AATAGAAA-GG-G--G--------TGT--T-T-ATGAAT-A-GA-TTG-ACAAACAGGTGAATGGTACA-T-G-TGGTCAGTTTAA--GATT-TCTTAAGAAAAAATTG--G-TG--GGAGTTGA--G--CTA-GAAATTTG--CT-AAAT--GTTTCCAACATG-AAGGATTTCA-CAAGAAAAAAA-CAACAACC---CTGAAATGTA--TNATGCT-AC---C-TGAA-GAA-AACTA-CAGGAAAGANTT--GCA--TAAGACA-CTGAAATCAACT-CAGATTTA--CCTGT-GGAAAGCANTGTCA-TGCCTGAGT-AAC-TC-TGTG-ACCTA---AATT-CAGAC--------C---AAATG-TGAAT-CTTNGCTGAC-C----AAATT-GTAA---AG-TCT-A-----TTG-ATCAAT------CC-AG---CAG--G-CAA-TTGA-A-AACTC-TAC-C--GG--TCT---TTTGTAATTC
Reference ( gi|2 ) : AGCGAATT-ACA---TAAGA-CCGGT-A-GAGTTTT-CAA-TTG-CC-----TGCTAG------A-TTG-A--AAATAGA-CT---TTA-CAAT-TT----G-G---TCAGCAAAG-ATTCA-CATTT---GGTCTG-A--------ATT-TAGGT---CA-CA-G-AGTT-ACTC-AGG-T--ATGACAATGAAGTGACTACCTTTTCC-CCAG-TGT---G---G-----TG------TGTTTA------TG-----ATTAT-C------AATC-AT-TTTG-TTTCA-A--T--G--T-CGTG-T-TTACA-TATTT-CTATGATTCA--AA-TTAGT--C-AG-TA-A----TCAGGGCATTA--AT---TAA-TT---AAAAAAGAATTA-----AAT--CGGCT--------GTCAAGG--TATTGTA-GTAAAGGAATGTTTGCACGTACA-TGTAT----ATCTTAAATGATTTTTTTATTGCA-TTTC-AGTATTTCAAAAAATATAATGC------------TTG--------TAC-----------AAC-T-TTCAGATGTGCTTTC----------------A------------------GATTTT--ATCACAGAA-----------T----------TTTTAGTTTTCATTCT-TTAATTTG----AAAGGGGGGT--GG--GGGTGACTTTAAT-TTTTG-CCTCTGAAACTACTATTTTCATGTGCTGAAATTTGATT-ATATTATTATGATTAATTA--AATTGAATAGGTA-TACTTCTTTTGGGTA----AAATGGAAAG---AAACCGT-TCTTTC--GATGAAGATTATGC-GACTGCAAATATCCATCGTGTAATAATCTT-GGA-ACAAACAG----GG---TTTCTGAAT-------AACTTA-T-TGGCAAT-----CTTCAAATTGTCTGAAGATA----TACACGAAACATTAGG-TCGACCCAGT-ATTT--T-TTTTCTATAATTCAATATTT---ATGTCCATCTTGT-C-----CCACTGGC--AA--TAAC--G---TT---T-GATTTGCTG-A-CAATACAACACT-C-A-GTTTT--CCCGATT--ACA-GT-TATCA-G-AAAGGAAT--TTCC-T---CATTGTAAAGGTCAATAATTTCTGTTTTT-GTTT-CTTCAAAAATTTCCTTTTCCATTTCTAAAATATCTCCCCAACT-----------------T-----A-TAAACTGAAT-GG---TGTAAATTTAACGAAGAAATACACTGCTGGGAAGATAAGTA-------TTGA-CC-AAGCCCAAAAACATATAAATA-CTGAAAGGC--TTGCCTAGA---ATA-GCATGAATTCTATT--GGTC--A--AGCATTAAC--AATAGAA--GG-G--G--------TGT--T-T-ATGAAT-A-GA-TTG-ACAAACAGGTGAATGGTACAGT-G-TGGTCAGTTTAA--GAGT-TCTTAAGAAAAAATTG--G-TG--G-AGTTGA--G--CTA-GAAATTTG--CT-AA-T--GTTTCCAACAT--AAGGATTTCA-CAAGAAAA----CAACAACC---CTGAAATGTA--TAATGCT-AC---C-TGAA-GAACAACTA-CAGGAAAGACTT--GGA--TAAGACA-CTGAAATCAACT-CAGATTTA--C-TGT-G-AAAGCAATATTA-TGCTTGAGT-AAC-TC-TGTGGACCTA---AATT-CAGAC--------C---AAATG-TGAAT-CTTAGCTGAC-C----AAATT-CTAA---AG-TCT-A-----TTG-ATCAAT------CC-AG---TAG--G-CAA-TTG--A-AACTC-TA--C--GG--TC----TTTGTATTTC
gi|1 : AGCGAATTGACA---TAAGAACCGGT-A-GAGTTTTTCAA-TTG-CC-----TGCTAG------AATTG-AT-CAATAGA-CT---TTA-CA-T-TT----G-G---TCAGCAAAG-ATTCA-CATTT---GGTCTG-A--------ATT-TAGGT---CA-CATG-AGTT-ACTC-AGG-T--ATGACAATGAAGTAACT-CCTTTTCC-CCA--TGT---G---G-----TGGGTGTGTGTTTACTAGTATG-----ATTATTC------AATC-AT-TTTG-TTTCATA--T--G--TTCGTGAT-TTACA-TATTCACTATGATTCA--AA-TTAGT--C-AG-TA-AA---TCAGGGCATTA--AT---TAAATT---AAAA--GAAT-A-----AA---CGGCAA-------GTCAAAGGTTATTGTACGTAAAG-AATGTTTGCACGTACAATGTATT---AACTTAAATGATTTTTTAAT-GCT-TTTCCAGTATTTTCAAAAATATAATGC------------GTG--------TACTGCTGGTAAACAACCT-TTCAGATGTGCTTTCCAA-------------A------------------GATTTCTAATCACAGAAACGGTG-----TAAGGAA----TTTTAGTTTTCATTCTATTAATTTG----A---------------------CTTTAAT-TTTTGGCCTCTGAA-CTACTATTTTCATGTGCGAAAAATTGATTTATATTAT-ATGAT--ATTATAAATTG--TAGGTAATACTTCTTTTGGGTA----AAATGGAAAAGAAAAACCATATCTTTTCTGATGGAGATTATGCTGACTGCAAAT-TCCATCGTGTACTAATCTTTGGA-ACAAACGG----GG---TTTCTGAAT-------AACTTA-T--GGCAAT-----CTCAAAATTGTCTGAAGATA----TACA-GAAACATTAGGATCGACCAAGT-ATTT--------------------ATTTGGAATGTCCATCTTGG-T-----CCACTG-C--AAAACAAC--G---TT---T-GATTTGCTG-A-ACATACAACACC-C-AAGTTTT--CCTGATT--CC--------CA------------------T---CATTGTAAAGGTCAATAATTTCTGTTTTTTGTTT-CTTCAAAA--TTTCTTT-----------AATATCTCCCCAACT-----------------T-----ACTAAACTGAATAGG---TGTAAAATTAACGAAGAAATACACTGCTGGGAAGATAAGTAGGCCATATTGAGCCGAAGCCCGAAAA-ATATAAATAACTGAAAGGCATTTGCCTAGACATATAAGCAATAAT-CTATG--GGTCCAA--GGCATTAACTAAATAGAAAAGG-G--G--------TGT--T-TTATGAAT-A-GAATTG-ACAA-CAGGTGAATGGTAC-GT-G-TGGTCAGTTTTA--CACT-TCTTAAGAAAAA-TTGAAG-GG--A-AGTTGA--GAGCTAAGAAATTTG--CT-AAAT--GTTTCCAACATGAAAGGATTTCAACAAGAAAA----AAACAATCAACCTGAAATGTAAATAATGAT-AC---CGTGAA-GA---------------GACTT--GCA--TAAGACAACTGAA-TCAACTGCAGATTTA--CCTGT-GGAAAGCAATGT-A-TGCTTGAGT-AAC-TC-TGTGGACACATAGAATT-CAGAC--------CAAAAAATGTTGAATACTTAGCTGACGC----AAATTACTAA---AATTCT-A-----TTGAATCAAT------CC-GT---CAG--GACAA-TTG--A-AACTC-TAACC--GG--TCTTATTTTGTATTTC
gi|1 : AGCGAAAT-ACAAAATAAGA-CCGGTTA-GAGTTT--CAA-TTGTCC-----TGACGG------A-TTG-ATTCAATAGAATT---TTAGTAAT-TT----GCG---TCAGCTAAGTATTCAACATTTTTTGGTCTG-A--------ATTCTATGTGTCCA-CA-G-AGTT-ACTC-AAG-C--AT-ACATTGgct
gi|3 : agcgaattgacataagaaccggtagagtttttcaattgcctgctagaattgatcaatagactttacatttggtcagcaaagattcacatttggtctgaatttaggtcacatgagttactcaggtatgacaatgaagtaactccttttccccatgtggtgggtgtgtgtttactagtatgattattcaatcattttgtttcatatgttcgtgatttacatattcactatgattcaaattagtcagtaaatcagggcattaattaaattaaaagaataaacggcaagtcaaaggttattgtacgtaaagaatgtttgcacgtacaatgtattaacttaaatgattttttaatgcttttccagtattttcaaaaatataatgcgtgtactgctggtaaacaacctttcagatgtgctttccaaagatttctaatcacagaaacggtgtaaggaattttagttttcattctattaatttgactttaatttttggcctctgaactactattttcatgtgcgaaaaattgatttatattatatgatattataaattgtaggtaatacttcttttgggtaaaatggaaaagaaaaaccatatcttttctgatggagattatgctgactgcaaattccatcgtgtactaatctttggaacaaacggggtttctgaataacttatggcaatctcaaaattgtctgaagatatacagaaacattaggatcgaccaagtatttatttggaatgtccatcttggtccactgcaaaacaacgtttgatttgctgaacatacaacacccaagttttcctgattcccatcattgtaaaggtcaataatttctgttttttgtttcttcaaaatttctttaatatctccccaacttactaaactgaataggtgtaaaattaacgaagaaatacactgctgggaagataagtaggccatattgagccgaagcccgaaaaatataaataactgaaaggcatttgcctagacatataagcaataatctatgggtccaaggcattaactaaatagaaaaggggtgttttatgaatagaattgacaacaggtgaatggtacgtgtggtcagttttacacttcttaagaaaaattgaagggaagttgagagctaagaaatttgctaaatgtttccaacatgaaaggatttcaacaagaaaaaaacaatcaacctgaaatgtaaataatgataccgtgaagagacttgcataagacaactgaatcaactgcagatttacctgtggaaagAGCGAATT-ACA---AAAGA-CTG-T-A-GAGTTTT-CAA-TTG-CC-----TACTGG------A-TTG-AT-CAATAGA-CT---TTA-GAAT-TT----G-G---TCAGCTAAG-ATTCA-CATTT---GGTCTG-A--------ATT-TAGGT---CA-CA-G-AGTT-ACTC-AAG-C--AT
gi|13 : tcttttgggttaaatggaaagaaactattgattatgtagattacaaattccatctttggaacaaacagggtttctgaataacttaatggcaatttaatctttaaattgtctgaaaatatacacgaaacattaggtcgaccaaatattttatttttccatcgcaataacacattaaatttgctgaacaatacaaaactccagttttcccgattacatgtatttcaggaaaggaatttccctcattgtaaaggtcaataatttctttctttgtttcttcgaaaatttcttttccatttctaaaatatctccctaacttttattataagctgaataggtataaaattaacgaagaaatacactgctgggaagataagtattgaccaagccccaaaactataaatactgaaaggcttgcctagaatagcatgaattctattggtcaagcattaacaatatagggaggtgtttatgaatagattgacaaacaggtgaatggtactagtgatcagtttaagatttcttaaaaaaaaattggtgggagttgagttagaaatttgctaaatgtttccaacatgaaggatttcacaagaaaaaaacaacaaccctgaaatgtataattctacctgaagaaaaccacaggaaagagttgcataagacactgaaatcaactcagatttacctgtggaaagcaatatAGCGAATT-ACA---AAAGA-CCGGT-A-GAGTTTT-CAA-TTG-CC-----TGCTAC------A-TTG-AT-CAATAGA-CT---TTA-CAAT-TT----G-G---TCAGCAAAG-ATTCA-CATTT---GGTCTG-A--------ATT-TAGGT---CA-CA-T-AGTT-ACTC-AGG-T--ATGACAATGAAGTGACTACCTTTTCT-CCAG-TGT---G---G------G------TGTTTA------TG-----ACTGT-TA-----AATC-AT-TT---------------------------------------CTAAGATTCA--GA-TTAGT--C-AT-TA-A----TCAGGGCATg
gi|14 : cAGCGAATT-ACA---AAAGA-CCGGT-A-GAGTTTT-CAA-TTG-CC-----TGCTAGTGCTAGA-TTG-AT-CAATAGA-CT---TTA-CAAT-TT----G-G---TCAGCAAAG-ATTCA-CATTT---GGTCTG-A--------ATT-TAGGT---CA-CA-G-AGTT-ACTC-AGG-T--ATGACAATGAAGTGACCAACTTTTCC-CC-G-TGTG--G---G-----TG------TGTTCA------TG-----ATTAT-
gi|12 : AGCGAATT-ACA---AAAGA-CCAGT-A-GAGTTTT-CAA-TTG-CC-----TGTTTG------A-TTG-AT-CAATAGA-CT---TTA-CAAT-TT----G-G---TCAGCAAAG-ATTCA-CAATT---GGTCTG-A--------ATT-TCGGT---CA-CA-G-AGTT-ACTC-AAG-T--ATGACCATGAAGTGACAACTTTTTTT-CC-----T---C---A-----TG------TGTGTG------TG------------------AATC-AG-TTTG-CTT-A------------CGTG-CAATACATTATTT-CTATGAGTCAGCAA-TCAGT--CGAG-TG-A----t
gi|9 : cAGCGAATT-ACA---AAAAA-TCGGT-A-GAATTTT-CAA-TTG-GC-----TGCTGG------A-TTG-A----------------T--CAAT-TT----G-G---TCCGCCAAG-TATAA-CATTT---GGTCTG-ACCGTCTGAATG-GAGGT---CA-CA-T-TGTT-AATT-AGG-T--ATGACAATGAAGTGACAACCTTTT-T-TCAC-TGT---GC--G-----AG------TGCATG------TG--------------------------TTTG-TTTGA-AATT--C--T-CTTA-T-TTATATTATAT-CTAGCATTCA--GA-TTAAT--T-AG-CA-A----TCAGAGCA-TA--ATCAACAA-TT---AAAAAAaggca
gi|21 : cAGTGAATT-ACA---AAAGA-CCGGT-A-GAGTTTT-CAA-TTA-CC-----TGCTAG------A-TTG-ATCAATTAGA-CT---TTA-CAAT-TT----G-G---TCAGCAAAG-ATTCA-CATTT---GGTCT--A--------ATT-
gi|23 : GCGAATT-ACA---AAAGA-CCGGT-A-GAGTTTT-CAA-TTG-CC-----TGCTAG------A-CTGTT--CAATAGA-CT---TTA-CAAT-TT----G-G---aaa
gi|24 : GCGAATT-ACA---AAAGA-CCGGC-T-GAGTTTT-CAA-TTG-AC-----TTCTGG------A-TAG-ATCAAA-AGA-C
gi|7 : CGAATT-ACA---AACGATCCGGT-ACGAATTCT-CAAATTG-CC-----TGCTAT--------TTA-ATCAAATA----T---TCA--AATACT----A-GACCTTAATACTG-ATTCA-CATT----GGTCTG-A--------ATTGTAG-T---CAACA---AGTTGACTCCAGGCT--ATGACAATCGAGGGACTACCTTTTCC-CCAG-TGT---G---GC----TG------TGTTTA------TG-----ATTAT-TTTTTAAAATC-AT-TTTG-TTTCA-A--T--GTTT-CGTG-T-TTACA-TATT---CATG-TTCA--GA-TTA-T--C-TG-TA-A----TCA-GGCATTATGCT---TAA-TT---TAAAAAGAATTA-----AAT---GACC--------GTC-AGG--TATTGTA-G-ATAGGAATGTTTc
gi|19 : CGAATT-ACA---AAAGA-CCGGT-A-GAGTTTT-CAT-TTG-CC-----TGCTAG------A-TTG-AT-CAATAGA-CT---TTA-CAAT-TT----G-G---TCAGCAAAG-ATTCA-CTTTT---GGTCTG-A--------ATT-TAGGT---CA-CA-G-AGTT-ACTC-Aagcctgtttaccgcgtatgcacattaatg
gi|8 : GAAT--ACA---AAAGA-CCGGT-A-GAGTTTT-CAA-TTG-CTGCTAGTGCTAG------A-TTG-AT-CAATAGA-CTACATTC-CCAC-TTCTCAG-G---TCCGC--AG-ATTCA-CATTT---GGTCTGCA--------CTC-TAGGT---CA-CA-A-GATT-ACTC-AGG-TGCATGCGCCTGCACT-ACTACCTTGCCCTCCTGCTGTCAAG---GTCGACTG------CCTCTA------TGGATCTATTGT-TTA----AACCTATCTTTGCTTTCACA--T--GT-T-CGTGAT-TTAC---ATTT-CTATGATTCA--GATTTAGT--C-CGCTACATTCCTCAGGACATTA-------TAA-TTTAGAAAAAAGAATTA-----AATGACCGCA--------GTCAGGT--CATTGTA-G
gi|17 : GAAT--ACA---AAAGA-CCGGT-A-GAGTTTT-CAA-TTG-CTGCTAGTGCTAG------A-TTG-AT-CAATAGA-CTACATTC-CCAC-TTCTCAG-G---TCCGC--AG-ATTCA-CATTT---GGTCTGCA--------CTC-TAGGT---CA-CA-A-GATT-ACTC-AG
gi|10 : AATT-ATA---AAAGA-CTGGT-A-GAGTTTT-CAA-TTA-CC-----TGCTGG------A-TTG-AT-CAATAGA-CT---TTA-CAAT-TT----G-G---TGAGCCAAG-ATTCA-CATTT---GGTCTG-A--------ATT-TAGGT---CA-CA-G-AGTT-ACTC-GAG-C--AT
gi|5 : attggtgggaattgagctagaagtttgttttaatgaaatgtatcatgttacctgaagaaaactacaggaaagagttgcacaagacactgaaatcaactcagatttatctgtggaaagcaatat-CC-----TGCTTG------A-TTG-A--TCATAGG-CT---ATA-GAAT-TT----G-G---TCA--------------------------G-A--------ATG-TAGAT---CG-CA-G-AGT---------G-T--ATGACAATGAGGTGATAACCTTTTCC-CCGG-TGT---GTGCG-----TG------TGTTTA------TG-----ATTAT-CAATTG-AATC-GT-TGTG-TTT-A-A--TTAT--T-CTTG-T-TTGCA--ATTT-TGATTGTTC------TTGCTTGC-AT-T--A----TGAAGGCACAA--TT---TAA-TTTA-GAAAAGGAATTATTTCTAAC--TTGCTTGATTGCAGTCAGGC--TACAGTA-GTATAGGTATGTATACATGCATA-ATTATTGTGATTTT-AATGATTTTTCT-CCGCATTTTC-AGTATTTT-GAAAATATAATAC------------ATGCACTATCATGC-----------AAC-CGTTCAGATGTGCAATCACACATTAAGCAAGATA------------------GATTTT--ATTACCGAA-----------CGGTGCATTAATTTTAGTTTTCATTCT-TCATTTAGCGGAAAAGGGGGGT--GGGTGGGTAA---TAA---TTTG-CTTTTG-CGCTTCTATTTTCATGTGTTGAA-------T-ATA-----ATAATT-------------------A-TACTTCTTTTGTGTT----AAGTGAAAAG---AAACCAT-TCTCT
gi|15 : aAAG-ATTCA-CATGT----GTCTG-A--------ATC-TTGA-----A-CA-GAAGTT-GATC-AG
gi|4 : catgaagaatttcaaagaaaaaaaacaacaacctctagaaactatgctcacatactgaacgaaactaccaggaaagcttaaggaattaagaactgaatacaactcagtttagcctgtggaaagcaattactg--TATTGTA-GTATAGGAATGTTTGCATGTA----GGA-------CCTACATG------------------T-AGTATTT-GAAAAATATAATGCATACATGTACTACTG--------TAC-----------AACCT-TTCAGATGTGCTTTC----------------ACTTATACTTACCATGCAAGATTTT--ATCACGGAACGGTGTAGAAAT----------TTTTAGTTTTCTTTCT-TTAATTTG----AAAGGGGGTTAAGG--GGTTGAGTTTAATCTTTTG-CCTCTGTA-CTACTATTTTCATGTGCTGAAATT-GATT-ATATTAT-ATGAT-AATTA--AATTGA-TAGGTG-TACTTCTTTTGGGTATTTAAAATGGAAAG---AACCCAT-TCTTTTCTGATGGAGATTATGCTGATTGCAAAT-TCCATCATGTAATAATCTTTGGA-ACAAACAGCTAGGG---TTTCTGAAT-------AACTTAATATGACAAT-----CTTCAAATTGTCTGAAGATA----TACACGAAACATTAGT-TCGACCAAGT-ATTTTAT-TTTTCCATAATTC-ATATTTGG-ATGTCCATCTTGT-------CCACTGAC--AA--TAACATG---TT---T-AATTTGCTGAA-CAATACAACACTCC-A-ATTTT--CCCGATT--ACATGTATTTCAGG-AAAGGAAT--TTCC-TTCATATTGTAAAGGTCAATAATTa
gi|3 : tTCTTTTGGGTT----AAATGGAAAG---AAACTAT-T-------------GATTATGTAGATTACAAAT-TCCATC----------TTT-GGA-ACAAACAG----GG---TTTCTGAAT-------AACTTA-A-TGGCAATTTAATCTTTAAATTGTCTGAAAATA----TACACGAAACATTAGG-TCGACCAAAT-ATTT--TATTTT----------------------TCCATC-----------------GC--AA--TAAC--ACA-TT---A-AATTTGCTG-AACAATACAAAACT-CCA-GTTTT--CCCGATT--ACATGTATTTCA-GGAAAGGAAT--TTCCCT---CATTGTAAAGGTCAATAATTTCTTTCTTT-GTTT-CTTCGAAAATTTC-TTTTCCATTTCTAAAATATCTCCCTAACT-----------------TTTATTA-TAAGCTGAATAGG---TATAAAATTAACGAAGAAATACACTGCTGGGAAGATAAGTA-------TTGA-CC-AAGCCCCAAAAC-TATAAATA-CTGAAAGGC--TTGCCTAGA---ATA-GCATGAATTCTATT--GGTC--A--AGCATTAAC--AATATAG--GGAG--G--------TGT--T-T-ATGAAT-A-GA-TTG-ACAAACAGGTGAATGGTAC--TAG-TGATCAGTTTAA--GATT-TCTTAAAAAAAAATTG--G-TG--GGAGTTGA--G--TTA-GAAATTTG--CT-AAAT--GTTTCCAACATG-AAGGATTTCA-CAAGAAAAAAA-CAACAACC---CTGAAATGTA--TAATTCT-AC---C-TGAA-GAA-AACCA-CAGGAAAGAGTT--GCA--TAAGACA-CTGAAATCAACT-CAGATTTA--CCTGT-GGAAAGCAATAT-A-TGCTTGAGT-AAC-TC-TGTG-ACCTA---AATT-CAGAC--------C---AAATG-TGAAT-CTTAGCTGAC-C----AAATT-CTAA---AG-TCT-A-----TTG-ATCAAT------CC-AG---TAG--G-CAA-TTGA-A-AACTC-TA--C--AG--TCT---TTTGTAATTC
gi|22 : GATTATGCTGACTGCAAAT-TCCATCGTGTACTAATCTTTGGA-ACAAACGG----GG---TTTCTGAAT-------AACTTA---TGGCAAT-----CTTCgctg
gi|11 : TCTT-TGATACAAACAG----AGGAATTCTTAAATTTGTAGTAACTTA-T--GACAAT-----CTTCACATTATCTGAAGATATAAGTACATGTAATATTAGG-TCGACCATGTAATCT--A-TTTTCTTTAATTC-ATCTTTGG-ATGTCCATTTTGTGCATCAACAATTAGC--AG--TAAC--ACACTTTTAT-AATCTATTGAA-TAATTCAACACT-------------CCAATT-----------TCA-GAAAAGGAAT--TTTCGT---CATTGCAAAGATGAATA
gi|6 : CATTAGG-TTGACCAAGT-ATTTATT-TTTTCCATAATTCA-TATTTGG-ATGTCCATCTTG----------AATGGGGGAA--TAACC-G---TT---TTGAT--GCTG-G-CAATACAA-ACT-C-C-GTTTTTTCCCGATTCTGTA-TT-TA--G-G-AAAGGAATGTTCCC-T---CATTGTAAAGGT-AATAATT-ATGTTTTT-GTTTTCTTCAAAAATTTCT---------------ATA-CTCC---ACT-----------------T-----A-TAAGCTGAATAGG---TGTAAATTCA-TGAA--AATAC--TGCTGGAAA-ATAGATA-------TGGA-AC-CAGCC-AAAAAC-TATAAATA-CT-AAAGCG--TTGC---AA---ATA-GCATGAATC--ATTAGGGT------AGCCTTAAA--CATGAAA--GC-GACG--------TGTCTT-T-ATCAGTCA-GA-TTCCACAAACAGATGAATG-TACAAT-GATGGTCAGTTTAGATGATTGTCTGCAG-ACAAATTG--GTTC--G-AG-TGACGG--TCA-AAAA-TTG--CT-AA-TGCGTTTCCAACAT--
gi|16 : AATAATTTCTTTCTTT-GCTT-CTTCAAAAATTTC-TTTTCCATTTTTAAAATATCGTTCCAGTTCATTATTTTTTAATGGTT-----A-TAAGCTGAAT-GGCATTGTAAAATTCACAAAAGAATACACTGCTCGGTAGATTTGTA--------TAA-AC-AAGACCAAAAGC-TATGAATA-c
gi|20 : TTTTATT--GAAC--ATTGACAT-AAC--AATAGAG--GG-T--AATACTCTTTGT--TAT-ATTAAT-A-GA-TTG-CCAAACAGATGAATGGTACA-T-G-TGGTCAATTTAA--GATT-TCTTAAGA
gi|18 : CATTAAC--AATAGAAA-GG-G--G--------TGT--T-T-ATGAAT-AAGA-TTG-ACAAACAGGTGAATGGTACA-T---TGGTCAGTTTAA--GA-T-TCTTAAG-AAAAATTG--G-TGGAG-AGTTGA--G--CTA-GAAATTTG--CTAAA-T--GTT
gi|10 : ATTG--G-TG--GGAATTGA--G--CTA-GAAGTTTGTTTT-AA-T--G
gi|15 : CATG-AAGAATTTCA--AAGAAAAAAAACAACAACCT--CTAGAA---A--CTATGCTCACATAC-TGAACGA--AACTACCAGGAAAG-CTTAAGGAATTAAGA-A-CTGAATACAACT-CAG-TTTAGCC-TGTGG-AAAGCA--ATTACTGC-TGATC-AACTTC-TGT---TCAA---GATT-CAGA---------C---ACATG-TGAAT-CTTAaaatgtatcatgttacctgaagaaaactacaggaaagagttgcacaagacactgaaatcaactcagatttatctgtggaaagcaatatatgctcgagtaactctgtgacctaaattcagaccaaatgtgaatcttggctcaccaaattgtaaagtctattgatcaatccagcaggtaattgaaaactctaccagtcttttataatt
gi|10 : TGAAATGTA--TCATGTT-AC---C-TGAA-GAA-AACTA-CAGGAAAGAGTT--GCA--CAAGACA-CTGAAATCAACT-CAGATTTAT-C-TGT-GGAAAGCAATAT-A-TGCTCGAGT-AAC-TC-TGTG-ACCTA---AATT-CAGAC--------C---AAATG-TGAAT-CTTGGCTCAC-C----AAATT-GTAA---AG-TCT-A-----TTG-ATCAAT------CC-AG---CAG--G-TAA-TTGA-A-AACTC-TAC-C--AG--TC----TTT-TAT
gi|25 : attggtgggaattgagctagaagtttgttttaaAGATTTA--CCTGT-GGAAAGCAATAT-A-TGCTTGGGT-AAC-TC-aatt
gi|1 : CATTGTCA-TACCTGAGT-AAC-TCATGTG-ACCTA---AATT-CAGAC--------C---AAATG-TGAAT-CTTTGCTGAC-C----AAATG--TAA---AG-TCT-A-----TTG-ATCAAT------TCTAG---CAG--G-CAA-TTGAAA-AACTC-TAC-C--GG--TT----CTTATGT
gi|13 : agcgaattgCATTGTCA-TACCTGAGT-AAC-TA-TGTG-ACCTA---AATT-CAGAC--------C---AAATG-TGAAT-CTTTGCTGAC-C----AAATT-GTAA---AG-TCT-A-----TTG-ATCAAT------GT-AG---CAG--G-CAA-TTGA-A-AACTC-TAC-C--GG--TCT---TTTGTAATTCaagtaactccttttccccatgtggtgggtgtgtgtttactagtatgattattcaatcattttgtttcatatgttcgtgatttacatattcactatgattcaaattagtcagtaaatcagggcattaattaaattaaaagaataaacggcaagtcaaaggttattgtacgtaaagaatgtttgcacgtacaatgtattaacttaaatgattttttaatgcttttccagtattttcaaaaatataatgcgtgtactgctggtaaacaacctttcagatgtgctttccaaagatttctaatcacagaaacggtgtaaggaattttagttttcattctattaatttgactttaatttttggcctctgaactactattttcatgtgcgaaaaattgatttatattatatgatattataaattgtaggtaatacttcttttgggtaaaatggaaaagaaaaaccatatcttttctgatggagattatgctgactgcaaattccatcgtgtactaatctttggaacaaacggggtttctgaataacttatggcaatctcaaaattgtctgaagatatacagaaacattaggatcgaccaagtatttatttggaatgtccatcttggtccactgcaaaacaacgtttgatttgctgaacatacaacacccaagttttcctgattcccatcattgtaaaggtcaataatttctgttttttgtttcttcaaaatttctttaatatctccccaacttactaaactgaataggtgtaaaattaacgaagaaatacactgctgggaagataagtaggccatattgagccgaagcccgaaaaatataaataactgaaaggcatttgcctagacatataagcaataatctatgggtccaaggcattaactaaatagaaaaggggtgttttatgaatagaattgacaacaggtgaatggtacgtgtggtcagttttacacttcttaagaaaaattgaagggaagttgagagctaagaaatttgctaaatgtttccaacatgaaaggatttcaacaagaaaaaaacaatcaacctgaaatgtaaataatgataccgtgaagagacttgcataagacaactgaatcaactgcagatttacctgtggaaagcaatgtatgcttgagtaactctgtggacacatagaattcagaccaaaaaatgttgaatacttagctgacgcaaattactaaaattctattgaatcaatccgtcaggacaattgaaactctaaccggtcttattttgtatttcgct
gi|14 : cagcCATTGTCA-TACCTGAGT-AAC-TC-TGTG-ACCTA---AATT-CAGAC--------C---AAATG-TGAAT-CTTTGCTGAC-C----AAATT-GTAA---AG-TCT-A-----TTG-ATCAATCTAGCACT-AG---CAG--G-CAA-TTGA-A-AACTC-TAC-C--GG--TCT---TTTGTAATTCaagtgactaccttttctccagtgtgggtgtttatgactgttaaatcatttctaagattcagattagtcattaatcagggcat
gi|9 : agcCATTGTCA-TACCTAATT-AAC-AA-TGTG-ACCTC---CATT-CAGACGGTCAGACC---AAATG-TTATA-CTTGGCGGAC-C----AAATT-----------------------G-ATCAAT------CC-AG---CAG--C-CAA-TTGA-A-AATTC-TA--C--CGATTT----TTTGTAATTCaagtgaccaacttttccccgtgtgggtgtgttcatgattatt
gi|12 : cagcTCA-TACTTGAGT-AAC-TC-TGTG-ACCGA---AATT-CAGAC--------C---AATTG-TGAAT-CTTTGCTGAC-C----AAATT-GTAA---AG-TCT-A-----TTG-ATCAAT------CA-AA---CAG--G-CAA-TTGA-A-AACTC-TA--CT-GG--TCT---TTTGTAATTCaagtgacaaccttttttcactgtgcgagtgcatgtgtttgtttgaaattctcttatttatattatatctagcattcagattaattagcaatcagagcataatcaacaattaaaaaa
gi|7 : cagcCTGGAGTCAAC-T--TGTTGAC-TAC--AATT-CAGAC--------C----AATG-TGAAT-C--AGT--AT-T----AAGGT-CTAG---TA-TTT-GAATATTTG-ATTAA-------AT-AG---CAG--G-CAATTTG--AGAATTCGTA--CCGGA--TCG---TTTGTAATTCccatgaagtgacaactttttttcctcatgtgtgtgtgaatcagtttgcttacgtgcaatacattatttctatgagtcagcaatcagtcgagtgaaggca
gi|8 : cCCTGAGT-AAT-CT-TGTG-ACCTA---GAGTGCAGAC--------C---AAATG-TGAAT-CT--GCGGAC-CTGAGAAGTG-GGAATGTAG-TCT-A-----TTG-ATCAAT------CT-AGCACTAGCAG-CAA-TTGA-A-AACTC-TAC-C--GG--TCT---TTTGTATgctatgacaatcgagggactaccttttccccagtgtggctgtgtttatgattattttttaaaatcattttgtttcaatgtttcgtgtttacatattcatgttcagattatctgtaatcaggcattatgcttaatttaaaaagaattaaatgaccgtcaggtattgtagataggaatgtttagcctgtttaccgcgtatgcacattaatg
gi|19 : gTGAGT-AAC-TC-TGTG-ACCTA---AATT-CAGAC--------C---AAAAG-TGAAT-CTTTGCTGAC-C----AAATT-GTAA---AG-TCT-A-----TTG-ATCAAT------CT-AG---CAG--G-CAA-ATGA-A-AACTC-TAC-C--GG--TCT---TTTGTAATTCtgcatgcgcctgcactactaccttgccctcctgctgtcaaggtcgactgcctctatggatctattgtttaaacctatctttgctttcacatgttcgtgatttacatttctatgattcagatttagtccgctacattcctcaggacattataatttagaaaaaagaattaaatgaccgcagtcaggtcattgtag
gi|17 : cTGAGT-AAT-CT-TGTG-ACCTA---GAGTGCAGAC--------C---AAATG-TGAAT-CT--GCGGAC-CTGAGAAGTG-GGAATGTAG-TCT-A-----TTG-ATCAAT------CT-AGCACTAGCAG-CAA-TTGA-A-AACTC-TAC-C--GG--TCT---TTTGTAT
gi|21 : g---AATT--AGAC--------C---AAATG-TGAAT-CTTTGCTGAC-C----AAATT-GTAA---AG-TCTAA-----TTG-ATCAAT------CT-AG---CAG--G-TAA-TTGA-A-AACTC-TAC-C--GG--TCT---TTTGTAATTCg
gi|5 : agtCTGAC-C----AAATT-CTAT---AG-CCT-A------TG-ATCAAT------CA-AG---CAG--G-aaa
gi|23 : aC-C----AAATT-GTAA---AG-TCT-A-----TTG-AACAGT------CT-AG---CAG--G-CAA-TTGA-A-AACTC-TAC-C--GG--TCT---TTTGTAATTCaatgtagatcgcagagtgtatgacaatgaggtgataaccttttccccggtgtgtgcgtgtgtttatgattatcaattgaatcgttgtgtttaattattcttgtttgcaattttgattgttcttgcttgcattatgaaggcacaatttaatttagaaaaggaattatttctaacttgcttgattgcagtcaggctacagtagtataggtatgtatacatgcataattattgtgattttaatgatttttctccgcattttcagtattttgaaaatataatacatgcactatcatgcaaccgttcagatgtgcaatcacacattaagcaagatagattttattaccgaacggtgcattaattttagttttcattcttcatttagcggaaaaggggggtgggtgggtaataatttgcttttgcgcttctattttcatgtgttgaatataataattatacttcttttgtgttaagtgaaaagaaaccattctct
gi|24 : gcG-TCT-T-----TTG-ATCTAT------CC-AG---AAG--T-CAA-TTGA-A-AACTC--AGCC--GG--TCT---TTTGTAATTC
Alignments
lowQualScore : 11111111111111111111111111111111111 11111111111111111111 111111111111111111
lowQualScore : 11111 111 1111 11111111 11 3333333333333 111111 44444444444444444 44444444444444 111 111 1111 111 44444444444444444444 11 555555555555555 7777777777777777777 22 00000000000000000000000000000000000 44444444444444444444 11 111111111111111111 1 2222 6666666666666666666666666 11 1 3333 444444 1 1 3333333333333333 1 11111 111 111 11111 111 2222222 111 11111 1111 3333 3333333333333333 22222 1111 222222 11111 111 11111 111111111111111 66666666666666666666666 1 111 2222222 11 11 1 111 11 11111 3333333333333 111111 1 111111 1111 1111 11 111 11 11 3 22222 111 1 11 1 1 1 1 111 2222
lowQualScore : 3 6 3 3 3 44444 888888 2 5 000 3 3333 555 3 6 22222222 3 3 55 3 3 4 66 1 4 00 4 4 2222222222222 222222 11111111111111111 9999 5 00000000000000 000 333 5 66 5 1 66 5 5 5 5555 0 666 99 99 66666666666666666666 99 11 8 6 0 6 444444444444444 3 1111111111111111111 00 4 00000000000000000000000000000000000 2 99999999999999999999 33 4 222222222222222222 0 3 1111 2222222222222222222222222 33 0 8888 3 111111 0 3 0 9999999999999999 0 88888 444 8 222 0 6 8 3 5 44444 111 1111111 6 777 66666 7777 3 6 0000 999 6 2 6 9999999999999999 1 55555 4444 7 2 6 222222 7 99999 888 99 66666 2 1 8 8 0 888888888888888 0 77777777777777777777777 8 0 444 0 0 0 0 5 6666666 0 1 11 5 8 8 2 33 2 0 777 11 11 77777 99 777 99 5555555555555 6 6 6 6 6 111111 99 6 5 2 6 6 99 99 6 999999 6 7777 8 8 0 7777 8 8 11 1 8 444 8 3 8 8 11 11 11 8 0 8 77 1 9 0 3 6 22222 8 444 8 8 1 0 66 0 0 0 5 666 0000 4
lowQualScore : . . . . . ..... ...... . . ... . .... ... . . ........ . . .. . . . .. . . .. . . ............. ...... ................. .... . .............. ... ... . .. . . .. . . . .... . ... .. .. .................... .. .. . . . . ............... . ................... .. . ................................... . .................... .. . .................. . . .... ......................... .. . .... . ...... . . . ................ . ..... ... . ... . . . . . ..... ... ....... . ... ..... .... . . .... ... . . . ................ . ..... .... . . . ...... . ..... ... .. ..... . . . . . ............... . ....................... . . ... . . . . . ....... . . .. . . . . .. . . ... .. .. ..... .. ... .. ............. . . . . . ...... .. . . . . . .. .. . ...... . .... . . . .... . . .. . . ... . . . . .. .. .. . . . .. . . . . . ..... . ... . . . . .. . . . . ... .... .
lowQualScore : 1 2 1 1 1 33333 222222 9 7 888 1 1111 444 2 7 11111111 3 6 66 6 6 4 11 0 4 99 4 4 3333333333333 888888 99999999999999999 0000 0 00000000000000 999 222 0 99 0 4 99 0 0 0 6666 1 777 22 88 00000000000000000000 00 00 8 7 8 0 888888888888888 2 5555555555555555555 88 2 88888888888888888888888888888888888 5 55555555555555555555 88 2 888888888888888888 0 2 2222 8888888888888888888888888 22 0 5555 2 555555 0 2 0 8888888888888888 0 00000 000 0 555 2 0 0 2 0 88888 777 7777777 7 555 77777 0000 2 7 8888 555 7 5 7 2222222222222222 0 88888 2222 3 5 7 555555 2 22222 333 22 00000 5 0 0 0 8 666666666666666 8 00000000000000000000000 0 6 000 8 6 8 8 0 0000000 8 0 00 0 0 0 5 88 5 0 555 66 00 88888 22 555 22 0000000000000 7 7 7 7 7 555555 22 7 5 5 7 7 22 22 7 222222 7 0000 0 0 8 0000 0 0 00 0 0 000 0 8 0 0 88 00 00 0 8 0 77 0 0 2 3 7 00000 0 000 0 0 0 0 55 0 0 0 5 000 8888 0
consensus : AGCGAATT-ACAAAAGA-CCGGTA-GAGTTTT-CAA-TTGCC-----TGCT------AGA-TTGATCAA-TAGACT---TTACAAT-TT----GG---TCAGCAAAGATTCACATTTGGTCTG-A--------ATT-TAGGTCA-CA-GAGTT-ACTC-AGG-T--ATGACAATGAAGTGACTACCTTTTCC-CCA-G-TG-T---G---G-----TGTGTTTA------TG-----ATTATT------AATC-AT-TTTG-TTTCA-A--T--G--T-CGTG-T-TTACA-TATTT-CTATGATTCAG--A-TTAGT--C-AG-TA-A----TCAGGGCATTA--ATTAAT--TTA-AAAAAAGAATTA-----AA-T--CG-------GCA-GTCA--GGTTATTGTA-GTATAGGAATGTTTGCACGTACA--G-TATT---A-CTTAAATGATTTT--T---T--CGCA-TTT--CAGTATTTT-AAAAATATAATGCGT------------G--------TAC-----------AACCTTTCAGATGTGCTTTC--AC-CAT-------G----AGATTTT--ATCACGGAACGG--GT--G---GAA--TTTTAGTTTTCATTCT-TTAATTT----GAAAG-GGGGGT---G---GGGT-GA-TTTAAT-TTTTG-CCTCTGN-A-CTACTATTTTCATGTGCTGAAA---T-GATT-ATATTA-TATGAT--A-TTA--AATTGA-TAGGTA-TACTTCTTTTGGGTA----AAATGGAAAG---AAACCAT-TCTTTTCCGATGGAGATTATGCTGACTGCAAAT-TCCATCGTGTANTAATCTTTGGAACAAAC----GGGG---TTTCTGAAT-------AACTT-AT-TGGCAAT-----CTTCAAATTGTCTGAAGATATA----CACGAAACATTAGG-TCGACCAAGTATTT--T-TTTTCCATAATTC-ATATTTGGA-TGTCCATCTTG-T-------CCACT--GGCAATAACA-CG-TT----TGATTTGCTGAACAATACAACACT-C-A-G--TTTTCCCGATTACATGTATTTCA-G-AAAGGAA--TTTCC-T---CATTGTAAAGGTCAATAATTTCTGTTTTT-G-TTTCTTCAAAAATTTCCTTTTCCATTTCTAAAATATCTCCCCAACT-----------------T-----A-TAAGCTGAATAGG---TGTAAAATTAACGAAGAAATACACTGCTGGGAAGATAAG-------TATTGANC--AAGCCCAAAAAC-TATAAAT-ACTGAAAGGC--TTGCCTAGA-AT---AGCATGAATTCTATT--GGTC--A--AGCATTAAC--AATAG-AAAGGG--GT----------G--TT-TATGAAT-A-G-ATT-GACAAACAGGTGAATGGTAC-A-TG-TGGTCAGTTTAA--GATT-TCTTAAGAAAAAATTGGTGG-G-AGTT--GA--GCT-AGAAATTTGCT------AA-ATGTTTCCA----ACATG-AAGGATTTC-ACAAGAAAAAA----ACAA-CAACC-CTGAAATGT--ATAATGCT-AC---C-TGAAGAA-AACTA-CAGGAAAGACTT--GCA--TAAGAC-ACTGAAATCAACT-CAGATTTA-CCTGTGGAAAGCAATAT-ATGCTTGAGTAAC-TCTGT-G---ACCTA-AATTCAGACC---AAATG-TGAAT-CTTAGCTGAC-CAAATTN-TAAAG-TCTATTG-ATCAATCCAGCAGG-CAATTGAAAACTCT-ACCGGTC---TTTTGTANTTC
Reference ( family-866 ) : AGCGAATT-ACAAAAGA-CCGGTA-GAGTTTT-CAA-TTGCC-----TGCT------AGA-TTGATCAA-TAGACT---TTACAAT-TT----GG---TCAGCAAAGATTCACATTTGGTCTG-A--------ATT-TAGGTCA-CA-GAGTT-ACTC-AGG-T--ATGACAATGAAGTGACNACCTTTTCC-CCA-G-TG-T---G---G-----TGTGTTTA------TG-----ATTATT------AATC-AT-TTTG-TTTCA-A--T--G--T-CGTG-T-TTACA-TATTT-CTATGATTCAG--A-TTAGT--C-AG-TA-A----TCAGGGCATTA--NTTAAT--TTA-AAAAAAGAATTA-----AA-T--CG-------GCN-GTCA--GGNTATTGTA-GTATAGGAATGTTTGCACGTACA--G-TATT---A-CTTAAATGATTTT--T---C--CGC--TTT--CAGTATTTT-AAAAATATAATGCGT------------G--------TAC-----------AACCTTTCAGATGTGCTTTC--A-----------------AGATTTT--ATCACGGAA-----GT--G---GGA--TTTTAGTTTTCATTCT-TTAATTT----GAAA--GGGGGT---G---GGGT-GA-TTTAAT-TTTTG-CCTCTG--A-CTACTATTTTCATGTGCTGAAA---T-GATT-ATATTA-TATGAT--A-TTA--AATTG--TAGGTA-TACTTCTTTTGGGTN----AAATGGAAAG---AAACCAT-TCTTTTCTGATGGAGATTATGCTGACTGCAAAT-TCCATCGTGTACTAATCTTTGGAACAAAC----GGGG---TTTCTGAAT-------AACTT-AT-TGGCAAT-----CTTCAAATTGTCTGAAGATATA----CACGAAACATTAGG-TCGACCAAGTATTT--T-TTTTCCATAATTC-ATATTTGGA-TGTCCATCTTG-T-------CCACT--GGCAATAACG-CA-TT----TAATTTGCTGAACAATACAACACT-C-A-G--TTTTCCCGATTACATGTATTTCA-G-AAAGGAA--TTTCC-T---CATTGTAAAGGTCAATAATTTCTNTCTTT-G-TTTCTTCAAAAATTTCCTTTTCCATTTCTAAAATATCTCCCCAACT-----------------T-----A-TAAGCTGAATAGG---TGTAAAATTAACGAAGAAATACACTGCTGGGAAGATAAG-------TATTGANC--AAGCCCAAAAAC-TATAAAT-ACTGAAAGGC--TTGCCTAGA-AT---AGCATGAATTCTATT--GGTC--A--GGCATTAAC--AATAG-AAAGGG--GT----------G--TT-TATGAAT-A-G-ATT-GACAAACAGGTGAATGGTAC-A-TG-TGGTCAGTTTAA--GATT-TCTTAAGAAAAAATTGGTGG-G-AGTT--GA--GCT-AGAAATTTGCT------AA-ATGTTTCCA----ACATG-AAGGATTTC-ACAAGAAAAAA----ACAA-CAACC-CTGAAATGT--ATNATGCT-AC---C-TGAAGAA-AACTA-CAGGAAAGANTT--GCA--TAAGAC-ACTGAAATCAACT-CAGATTTA-CCTGTGGAAAGCANTGTCATGCCTGAGTAAC-TCTGT-G---ACCTA-AATTCAGACC---AAATG-TGAAT-CTTNGCTGAC-CAAATTG-TAAAG-TCTATTG-ATCAATCCAGCAGG-CAATTGAAAACTCT-ACCGGTC---TTTTGTAATTC
gi|1 : AGCGAATTGACATAAGAACCGGTA-GAGTTTTTCAA-TTGCC-----TGCT------AGAATTGATCAA-TAGACT---TTACA-T-TT----GG---TCAGCAAAGATTCACATTTGGTCTG-A--------ATT-TAGGTCA-CATGAGTT-ACTC-AGG-T--ATGACAATGAAGTAACT-CCTTTTCC-CCATG-TGGT---G---GGTG--TGTGTTTACTAGTATG-----ATTATTC-----AATC-AT-TTTG-TTTCATA--T--G--TTCGTGAT-TTACA-TATTCACTATGATTCAA--A-TTAGT--C-AG-TA-AA---TCAGGGCATTA--ATTAAA--TTA-AAAGAA----TA-----AA----CG-------GCAAGTCAAAGGTTATTGTACGTA-AAGAATGTTTGCACGTACAATG-TATT---AACTTAAATGATTTT--T---TAATGC--TTTTCCAGTATTTTCAAAAATATAATGCGT------------G--------TACTGCTGGTAAACAACCTTTCAGATGTGCTTTCCAA-----------------AGATTTCTAATCACAGAAACGGTGTAAG---GAA--TTTTAGTTTTCATTCTATTAATTT----GAC------------------------TTTAAT-TTTTGGCCTCTG--AACTACTATTTTCATGTGC-GAAAAATT-GATTTATATTA-TATGAT--A-TTATAAATTG--TAGGTAATACTTCTTTTGGGTA----AAATGGAAAAGAAAAACCATATCTTTTCTGATGGAGATTATGCTGACTGCAAAT-TCCATCGTGTACTAATCTTTGGAACAAAC----GGGG---TTTCTGAAT-------AACTT-AT--GGCAAT-----CTCAAAATTGTCTGAAGATATA----CA-GAAACATTAGGATCGACCAAGTATTT--------------------ATTTGGAATGTCCATCTTGGT-------CCACT--G-CAA-AACAACG-TT----TGATTTGCTGAACA-TACAACACC-C-AAG--TTTTCCTGATTCC--------CA------------------T---CATTGTAAAGGTCAATAATTTCTGTTTTTTG-TTTCTTCAAAA--TTTCTTT-----------AATATCTCCCCAACT-----------------T-----ACTAAACTGAATAGG---TGTAAAATTAACGAAGAAATACACTGCTGGGAAGATAAGTAGGCCATATTGAGCCGAAGCCCGAAAAA-TATAAATAACTGAAAGGCATTTGCCTAGACATATAAGCAATAA-TCTATG--GGTCCAA--GGCATTAACTAAATAGAAAAGGG--GT----------GT-TT-TATGAAT-A-GAATT-GAC-AACAGGTGAATGGTAC-G-TG-TGGTCAGTTTTA--CACT-TCTTAAG-AAAAATTGAAGG-GAAGTTGAGA--GCTAAGAAATTTGCT------AA-ATGTTTCCA----ACATGAAAGGATTTCAACAAGAAAAAA----ACAATCAA-C-CTGAAATGTAAATAATGAT-AC---CGTGAAG---------------AGACTT--GCA--TAAGACAACTG-AATCAACTGCAGATTTA-CCTGTGGAAAGCAATGT-ATGCTTGAGTAAC-TCTGT-GGACACATAGAATTCAGACCAAAAAATGTTGAATACTTAGCTGACGCAAATTACTAAAATTCTATTGAATCAATCCGTCAGGACAATTG-AAACTCTAACCGGTCTTATTTTGTATTTC
gi|10 : ATTGGTGG-G-AATT--GA--GCT-AGAAGTTTGTTTTAATGAA-ATGTAT-CATGTTACCTG-AAGAAAACT-ACAGGAAAGAGTTGCACAA--GACA-CTGAAATgct
gi|10 : TGAAATGT--ATCATGTT-AC---C-TGAAGAA-AACTA-CAGGAAAGAGTT--GCA--CAAGAC-ACTGAAATCAACT-CAGATTTA-TCTGTGGAAAGCAATAT-ATGCTCGAGTAAC-TCTGT-G---ACCTA-AATTCAGACC---AAATG-TGAAT-CTTGGCTCAC-CAAATTG-TAAAG-TCTATTG-ATCAATCCAGCAGG-TAATTGAAAACTCT-ACCAGTC---TTTTATAATTcaactcagatttatctgtggaaagcaatatatgctcgagtaactctgtgacctaaattcagaccaaatgtgaatcttggctcaccaaattgtaaagtctattgatcaatccagcaggtaattgaaaactctaccagtcttttataatt
gi|11 : attggtgggaattgagctagaagtttgttttaaTCTTTGATACAAAC----AGAGGAATTCTTAAATTTGTAGTAACTT-AT--GACAAT-----CTTCACATTATCTGAAGATATAAGTACATGTAATATTAGG-TCGACCATGTAATC--TATTTTCTTTAATTC-ATCTTTGGA-TGTCCATTTTG-TGCATCAACAATT--AGCAGTAACA-CA-CTTTTATAATCTATTGAATAATTCAACACT-C------------------CA---ATTTCA-GAAAAGGAA--TTTTCGT---CATTGCAAAGATGAATA
gi|12 : AGCGAATT-ACAAAAGA-CCAGTA-GAGTTTT-CAA-TTGCC-----TGTT------TGA-TTGATCAA-TAGACT---TTACAAT-TT----GG---TCAGCAAAGATTCACAATTGGTCTG-A--------ATT-TCGGTCA-CA-GAGTT-ACTC-AAG-T--ATGACCATGAAGTGACAACTTTTTTT-CC-------T---C---A-----TGTGTGTG------TG-----------------AATC-AG-TTTG-CTT-A------------CGTG-CAATACATTATTT-CTATGAGTCAGCAA-TCAGT--CGAG-TG-A----
gi|13 : cAGCGAATT-ACAAAAGA-CCGGTA-GAGTTTT-CAA-TTGCC-----TGCT------ACA-TTGATCAA-TAGACT---TTACAAT-TT----GG---TCAGCAAAGATTCACATTTGGTCTG-A--------ATT-TAGGTCA-CA-TAGTT-ACTC-AGG-T--ATGACAATGAAGTGACTACCTTTTCT-CCA-G-TG-T---G---G------GTGTTTA------TG-----ACTGTTA-----AATC-A---------------------------------------TTT-CTAAGATTCAG--A-TTAGT--C-AT-TA-A----TCAGGGCATaggca
gi|14 : cAGCGAATT-ACAAAAGA-CCGGTA-GAGTTTT-CAA-TTGCC-----TGCTAGTGCTAGA-TTGATCAA-TAGACT---TTACAAT-TT----GG---TCAGCAAAGATTCACATTTGGTCTG-A--------ATT-TAGGTCA-CA-GAGTT-ACTC-AGG-T--ATGACAATGAAGTGACCAACTTTTCC-CC--G-TG-TG--G---G-----TGTGTTCA------TG-----ATTATT------
gi|15 : CATG-AAGAATTTC-AAAGAAAAAAA----ACAA-CAACCTCTAGAA-----ACTATGCTCACATAC-TGAACGA-AACTACCAGGAAAG-CTTAAGGAATTAAGA--ACTGAATACAACT-CAG-TTTAGCCTGTGGAAAGCAAT-TACTG-CTGATCAACTTCTGT------TCAA-GATTCAGA-C---ACATG-TGAAT-CTT
gi|16 : AATAATTTCTTTCTTT-G-CTTCTTCAAAAATTTC-TTTTCCATTTTTAAAATATCGTTCCAGTTCATTATTTTTTAATGGTT-----A-TAAGCTGAAT-GGCATTGTAAAATTCACAAAAGAATACACTGCTCGGTAGATTTG-------TA-TAAAC--AAGACCAAAAGC-TATGAAT-Aa
gi|17 : GAAT--ACAAAAGA-CCGGTA-GAGTTTT-CAA-TTGCTGCTAGTGCT------AGA-TTGATCAA-TAGACTACATTCCCAC-TTCTCAGG---TCCGC--AGATTCACATTTGGTCTGCA--------CTC-TAGGTCA-CA-AGATT-ACTC-AG
gi|18 : CATTAAC--AATAG-AAAGGG--GT----------G--TT-TATGAAT-AAG-ATT-GACAAACAGGTGAATGGTAC-A-T--TGGTCAGTTTAA--GATT--CTTAAG-AAAAATTGGTGGAG-AGTT--GA--GCT-AGAAATTTGCT------AA-ATGTT
gi|19 : CGAATT-ACAAAAGA-CCGGTA-GAGTTTT-CAT-TTGCC-----TGCT------AGA-TTGATCAA-TAGACT---TTACAAT-TT----GG---TCAGCAAAGATTCACTTTTGGTCTG-A--------ATT-TAGGTCA-CA-GAGTT-ACTC-A
gi|2 : AGCGAATT-ACATAAGA-CCGGTA-GAGTTTT-CAA-TTGCC-----TGCT------AGA-TTGA-AAA-TAGACT---TTACAAT-TT----GG---TCAGCAAAGATTCACATTTGGTCTG-A--------ATT-TAGGTCA-CA-GAGTT-ACTC-AGG-T--ATGACAATGAAGTGACTACCTTTTCC-CCA-G-TG-T---G---G-----TGTGTTTA------TG-----ATTATC------AATC-AT-TTTG-TTTCA-A--T--G--T-CGTG-T-TTACA-TATTT-CTATGATTCAA--A-TTAGT--C-AG-TA-A----TCAGGGCATTA--ATTAAT--T---AAAAAAGAATTA-----AA-T--CG-------GCT-GTCA--AGGTATTGTA-GTAAAGGAATGTTTGCACGTACAT-G-TATA---T-CTTAAATGATTTT--TTTAT--TGCA-TTT--CAGTATTTCAAAAAATATAATGCTT------------G--------TAC-----------AA-CTTTCAGATGTGCTTTC--------------------AGATTTT--ATCACAGAA------T-----------TTTTAGTTTTCATTCT-TTAATTT----GAAAG-GGGGGTG--G---GGGT-GACTTTAAT-TTTTG-CCTCTGAAA-CTACTATTTTCATGTGCTGAAATT-T-GATT-ATATTATTATGATTAA-TTA--AATTGAATAGGTA-TACTTCTTTTGGGTA----AAATGGAAAG---AAACCGT-TCTTT--CGATGAAGATTATGC-GACTGCAAATATCCATCGTGTAATAATC-TTGGAACAAAC----AGGG---TTTCTGAAT-------AACTT-AT-TGGCAAT-----CTTCAAATTGTCTGAAGATATA----CACGAAACATTAGG-TCGACCCAGTATTT--T-TTTTCTATAATTCAATATTT--A-TGTCCATCTTG-TC------CCACT--GGCAATAACG----TT----TGATTTGCTG-ACAATACAACACT-C-A-G--TTTTCCCGATTACA-GT-TATCA-G-AAAGGAA--TTTCC-T---CATTGTAAAGGTCAATAATTTCTGTTTTT-G-TTTCTTCAAAAATTTCCTTTTCCATTTCTAAAATATCTCCCCAACT-----------------T-----A-TAAACTGAAT-GG---TGTAAATTTAACGAAGAAATACACTGCTGGGAAGATAAG-------TATTGACC--AAGCCCAAAAACATATAAAT-ACTGAAAGGC--TTGCCTAGA-AT---AGCATGAATTCTATT--GGTC--A--AGCATTAAC--AATAG--AAGGG--GT----------G--TT-TATGAAT-A-G-ATT-GACAAACAGGTGAATGGTAC-AGTG-TGGTCAGTTTAA--GAGT-TCTTAAGAAAAAATTGGT-G-G-AGTT--GA--GCT-AGAAATTTGCT-------A-ATGTTTCCA----ACAT--AAGGATTTC-ACAAG---AAA----ACAA-CAACC-CTGAAATGT--ATAATGCT-AC---C-TGAAGAACAACTA-CAGGAAAGACTT--GGA--TAAGAC-ACTGAAATCAACT-CAGATTTA--CTGT-GAAAGCAATATTATGCTTGAGTAAC-TCTGTGG---ACCTA-AATTCAGACC---AAATG-TGAAT-CTTAGCTGAC-CAAATTC-TAAAG-TCTATTG-ATCAATCCAGTAGG-CAATTG-AAACTCT-A-CGGTC----TTTGTATTTC
gi|20 : TTTTATT--GAAC--ATTGACAT-AAC--AATAG-A---GG--GTAATACTCTTTG--TTATATTAAT-A-G-ATT-GCCAAACAGATGAATGGTAC-A-TG-TGGTCAATTTAA--GATT-TCTTAAGA
gi|21 : AGTGAATT-ACAAAAGA-CCGGTA-GAGTTTT-CAA-TTACC-----TGCT------AGA-TTGATCAATTAGACT---TTACAAT-TT----GG---TCAGCAAAGATTCACATTTGGTCT--A--------ATT-
gi|22 : GATTATGCTGACTGCAAAT-TCCATCGTGTACTAATCTTTGGAACAAAC----GGGG---TTTCTGAAT-------AACTT-A--TGGCAAT-----CTTCaaa
gi|23 : GCGAATT-ACAAAAGA-CCGGTA-GAGTTTT-CAA-TTGCC-----TGCT------AGA-CTGTTCAA-TAGACT---TTACAAT-TT----GG---
gi|24 : GCGAATT-ACAAAAGA-CCGGCT-GAGTTTT-CAA-TTGAC-----TTCT------GGA-TAGATCAA-AAGAC
gi|25 : AGATTTA-CCTGTGGAAAGCAATAT-ATGCTTGGGTAAC-TCc
gi|3 : TCTTTTGGGTT----AAATGGAAAG---AAACTAT-T-------------GATTATGTAGATTACAAAT-TCCATC-----------TTTGGAACAAAC----AGGG---TTTCTGAAT-------AACTT-AA-TGGCAATTTAATCTTTAAATTGTCTGAAAATATA----CACGAAACATTAGG-TCGACCAAATATTT--TATTTT----------------------TCCATC--------------------GCAATAACA-CA-TT----AAATTTGCTGAACAATACAAAACT-CCA-G--TTTTCCCGATTACATGTATTTCA-GGAAAGGAA--TTTCCCT---CATTGTAAAGGTCAATAATTTCTTTCTTT-G-TTTCTTCGAAAATTTC-TTTTCCATTTCTAAAATATCTCCCTAACT-----------------TTTATTA-TAAGCTGAATAGG---TATAAAATTAACGAAGAAATACACTGCTGGGAAGATAAG-------TATTGACC--AAGCCCCAAAAC-TATAAAT-ACTGAAAGGC--TTGCCTAGA-AT---AGCATGAATTCTATT--GGTC--A--AGCATTAAC--AATAT-AGGGAG--GT----------G--TT-TATGAAT-A-G-ATT-GACAAACAGGTGAATGGTAC-T-AG-TGATCAGTTTAA--GATT-TCTTAAAAAAAAATTGGTGG-G-AGTT--GA--GTT-AGAAATTTGCT------AA-ATGTTTCCA----ACATG-AAGGATTTC-ACAAGAAAAAA----ACAA-CAACC-CTGAAATGT--ATAATTCT-AC---C-TGAAGAA-AACCA-CAGGAAAGAGTT--GCA--TAAGAC-ACTGAAATCAACT-CAGATTTA-CCTGTGGAAAGCAATAT-ATGCTTGAGTAAC-TCTGT-G---ACCTA-AATTCAGACC---AAATG-TGAAT-CTTAGCTGAC-CAAATTC-TAAAG-TCTATTG-ATCAATCCAGTAGG-CAATTGAAAACTCT-A-CAGTC---TTTTGTAATTC
gi|4 : TATTGTA-GTATAGGAATGTTTGCATGTA-G--G--------A-CCTACATG------------------------TAGTATTTG-AAAAATATAATGCATACATGTACTACTG--------TAC-----------AACCTTTCAGATGTGCTTTC--ACTTATACTTACCATGCAAGATTTT--ATCACGGAACGGT-GT--A---GAAATTTTTAGTTTTCTTTCT-TTAATTT----GAAA--GGGGGTTAAG---GGGTTGAGTTTAATCTTTTG-CCTCTGT-A-CTACTATTTTCATGTGCTGAAA---TTGATT-ATATTA-TATGAT--AATTA--AATTGA-TAGGTG-TACTTCTTTTGGGTATTTAAAATGGAAAG---AACCCAT-TCTTTTCTGATGGAGATTATGCTGATTGCAAAT-TCCATCATGTAATAATCTTTGGAACAAACAGCTAGGG---TTTCTGAAT-------AACTTAATATGACAAT-----CTTCAAATTGTCTGAAGATATA----CACGAAACATTAGT-TCGACCAAGTATTTTAT-TTTTCCATAATTC-ATATTTGGA-TGTCCATCTTG-T-------CCACT--GACAATAACA-TG-TT----TAATTTGCTGAACAATACAACACTCC-A-A--TTTTCCCGATTACATGTATTTCAGG-AAAGGAA--TTTCC-TTCATATTGTAAAGGTCAATAATTgctg
gi|5 : tCC-----TGCT------TGA-TTGATCA--TAGGCT---ATAGAAT-TT----GG---TCAG----------------------A--------ATG-TAGATCG-CA-GAGT---------G-T--ATGACAATGAGGTGATAACCTTTTCC-CCG-G-TG-T---GTGCG-----TGTGTTTA------TG-----ATTATCAATTG-AATC-GT-TGTG-TTT-A-A--TTAT--T-CTTG-T-TTGCA--ATTT-TGATTGTTC------TTGCTTGC-AT-T--A----TGAAGGCACAA--TTTAAT--TTA-GAAAAGGAATTATTTCTAACT--TGCTTGATTGCA-GTCA--GGCTACAGTA-GTATAGGTATGTATACATGCATA--ATTATTGTGA-TTTTAATGATTTTTCT---C--CGCATTTT--CAGTATTTT-GAAAATATAATACAT------------GCACTATCATGC-----------AACCGTTCAGATGTGCAATC--ACACATTAAGCAAGAT--AGATTTT--ATTACCGAACG---GT--GCATTAA--TTTTAGTTTTCATTCT-TC-ATTTAGCGGAAAAGGGGGGT---GGGTGGGT-AA---TAA---TTTG-CTTTTGC-G-CTTCTATTTTCATGTGTTGAA---------T-ATA-----ATAAT--------------------TA-TACTTCTTTTGTGTT----AAGTGAAAAG---AAACCAT-TCTCT
gi|6 : aCATTAGG-TTGACCAAGTATTTATT-TTTTCCATAATTC-ATATTTGGA-TGTCCATCTTG-----------AATGGGGGAATAAC--CGTTT----TGA--TGCTG-GCAATACAA-ACT-C-C-GTTTTTTCCCGATT-C-TGTATTTAG-G-AAAGGAATGTTCCC-T---CATTGTAAAGGT-AATAA-TTATGTTTTT-GTTTTCTTCAAAAATTTCT---------------ATA-CTCC---ACT-----------------T-----A-TAAGCTGAATAGG---TGT-AAATTCATGA--AAAT--ACTGCT-GGAAAATAGA-------TATGGAAC--CAG-CCAAAAAC-TATAAAT-ACT-AAAGCG--TTGC---AA-AT---AGCATGAAT--CATTAGGGT------AGCCTTAAA--CAT-G-AAAGCGACGT----------GTCTT-TATCAGTCA-G-ATTCCACAAACAGATGAAT-GTACAA-TGATGGTCAGTTTAGATGATTGTCTGCAG-ACAAATTGGTTC-G-AG-T--GACGGTC-AAAAA-TTGCT------AATGCGTTTCCA----ACAT
gi|7 : CGAATT-ACAAACGATCCGGTACGAATTCT-CAAATTGCC-----TGCT------AT--TTAATCAAATA---T---TCA-AATACT----AGACCTTAATACTGATTCACATT-GGTCTG-A--------ATTGTAG-TCAACA--AGTTGACTCCAGGCT--ATGACAATCGAGGGACTACCTTTTCC-CCA-G-TG-T---G---GC----TGTGTTTA------TG-----ATTATTTTTTAAAATC-AT-TTTG-TTTCA-A--T--GTTT-CGTG-T-TTACA-TATT---CATG-TTCAG--A-TTA-T--C-TG-TA-A----TCA-GGCATTATGCTTAAT--TT---AAAAAGAATTA-----AA-T---G-------ACC-GTCA--GG-TATTGTA-G-ATAGGAATGTTTc
gi|8 : GAAT--ACAAAAGA-CCGGTA-GAGTTTT-CAA-TTGCTGCTAGTGCT------AGA-TTGATCAA-TAGACTACATTCCCAC-TTCTCAGG---TCCGC--AGATTCACATTTGGTCTGCA--------CTC-TAGGTCA-CA-AGATT-ACTC-AGG-TGCATGCGCCTGCACT-ACTACCTTGCCCTCCT-GCTG-TCAAG---GTCGACTGCCTCTA------TGGATCTATTGTTTA----AACCTATCTTTGCTTTCACA--T--GT-T-CGTGAT-TTAC---ATTT-CTATGATTCAG--ATTTAGT--C-CGCTACATTCCTCAGGACATTA----TAAT--TTAGAAAAAAGAATTA-----AA-TGACC-------GCA-GTCA--GGTCATTGTA-Gagcctgtttaccgcgtatgcacattaatg
gi|9 : AGCGAATT-ACAAAAAA-TCGGTA-GAATTTT-CAA-TTGGC-----TGCT------GGA-TTGATCAA-T----------------TT----GG---TCCGCCAAGTATAACATTTGGTCTG-ACCGTCTGAATG-GAGGTCA-CA-TTGTT-AATT-AGG-T--ATGACAATGAAGTGACAACCTTTT-T-TCA-C-TG-T---GC--G-----AGTGCATG------TG-------------------------TTTG-TTTGA-AATT--C--T-CTTA-T-TTATATTATAT-CTAGCATTCAG--A-TTAAT--T-AG-CA-A----TCAGAGCA-TA--ATCAACAATTA-AAAAA
Alignments
lowQualScore : 111111111111111111111111111 1111111111111111111111111111
lowQualScore : 11111 111 1111 11111111 11 3333333333333 111111 33333333333333333 1111111111 44444444444 111 111 111111 111 44444444444444444444 11 555555555555555 5555555555555555 22 000000000000000000000000000 2222222222222222222222222222 11 777777777777777777 1 2222 55555555555555 1 1 11 444444 1 1 3333333333333333 1 11111 111 111 1111 111 2222222 2222 11111 1111 33333 3333333333333333 1111 222222 11111 111 11111 111111111111111 66666666666666666666666 1 111 2222222 11 11 1 111 11 11111 3333333333333 111111 1 111111 1111 1111 11 111 11 11 22222 111 1 11 1 1 1 1 111 2222
lowQualScore : 3 6 3 3 3 44444 888888 2 5 000 3 3333 555 3 6 22222222 3 3 55 3 3 4 66 1 4 00 4 4 2222222222222 222222 00000000000000000 4444444444 5 5 00000000000 000 333 5 66 5 1 66 5 5 777777 0 666 99 99 66666666666666666666 99 11 5 6 0 6 444444444444444 3 1111111111111111 00 4 000000000000000000000000000 2 5555555555555555555555555555 33 4 000000000000000000 0 1111 3 2 00000000000000 3 0 3 0 11 3 111111 0 3 0 5555555555555555 0 88888 444 8 666 0 6 8 3 3 0 4444 111 1111111 4444 66666 7777 3 6 00000 999 6 2 6 9999999999999999 1 6 6 4444 7 2 6 222222 7 99999 888 99 66666 2 8 8 0 888888888888888 0 77777777777777777777777 8 0 444 0 0 0 0 5 6666666 0 1 11 5 8 8 2 33 2 0 777 11 11 77777 99 777 99 5555555555555 6 6 6 6 6 111111 99 6 5 2 6 6 99 99 6 999999 6 7777 8 8 0 7777 8 8 11 1 8 444 8 3 8 8 0 11 11 8 0 8 77 88 6 6 22222 8 444 8 8 0 11 0 0 0 5 666 0000 1
lowQualScore : . . . . . ..... ...... . . ... . .... ... . . ........ . . .. . . . .. . . .. . . ............. ...... ................. .......... . . ........... ... ... . .. . . .. . . ...... . ... .. .. .................... .. .. . . . . ............... . ................ .. . ........................... . ............................ .. . .................. . .... . . .............. . . . . .. . ...... . . . ................ . ..... ... . ... . . . . . . .... ... ....... .... ..... .... . . ..... ... . . . ................ . . . .... . . . ...... . ..... ... .. ..... . . . . ............... . ....................... . . ... . . . . . ....... . . .. . . . . .. . . ... .. .. ..... .. ... .. ............. . . . . . ...... .. . . . . . .. .. . ...... . .... . . . .... . . .. . . ... . . . . . .. .. . . . .. .. . . ..... . ... . . . .. . . . . ... .... .
lowQualScore : 1 2 1 1 1 33333 222222 9 7 888 1 1111 444 2 7 11111111 3 6 66 6 6 4 11 3 4 99 4 4 3333333333333 888888 88888888888888888 6666666666 0 6 44444444444 999 222 0 99 0 4 99 0 0 888888 1 777 22 88 00000000000000000000 00 00 7 7 8 0 888888888888888 2 0000000000000000 88 2 888888888888888888888888888 5 5555555555555555555555555555 88 2 222222222222222222 0 2222 2 5 55555555555555 2 0 2 0 00 2 555555 0 2 0 2222222222222222 0 44444 000 0 000 2 0 0 2 8 7 2222 777 7777777 2222 77777 0000 2 7 88888 555 7 5 7 2222222222222222 0 7 7 2222 3 5 7 555555 2 22222 333 22 00000 5 0 0 8 666666666666666 8 00000000000000000000000 0 6 000 8 6 8 8 0 0000000 8 0 00 0 0 0 5 88 5 0 555 66 00 88888 22 555 22 0000000000000 7 7 7 7 7 555555 22 7 5 5 7 7 22 22 7 222222 7 0000 0 0 8 0000 0 0 00 0 0 000 0 8 0 0 8 00 00 0 8 0 77 33 7 7 00000 0 000 0 0 0 00 0 0 0 5 000 8888 0
consensus : AGCGAATT-ACAAAAGA-CCGGTA-GAGTTTT-CAA-TTGCC-----TGCT------AGA-TTGATCAA-TAGACT---TTACAAT-TT----GG---TCAGCAAAGATTCACATTTGGTCTG-A--------ATT-TAGGTCA-CA-GAGTT-ACTC-AGG-T--ATGACAATGAAGTGACTACCTTTTCC-CCA-G-TG-T---G---G-----TGTGTTTA------TG-----ATTATT------AAT-----C-AT-TTTG-TTTCA--A--TG--T-CGTG-T-TTACA-TATTT-CTATGATTCAG--A-TTAGT--C-AG-TA-A----TCAGGGCATTA--ATTAAT--TTA-AAAAAAGAATTA-----AA-----T--CG---GCA-GTCA--GGTTATTGTA-GTATAGGAATGTTTGCACGTACA--GT-ATT---A-CTTAAATGATTTTT---T--CGCATTT-C-AGTATTTT-AAAAATATAATGCGT------------GTACTGCCG------AACCTTTCAGATGTGCTTTCAC----------CAT-------G--A--GATTTT--ATCACGGAA-CGGTGT--GGA---A--TTTTAGTTTTCATTCT-TTAATTTG----AAAGGGGGGTG-GGG---GT-GA-TTTAAT-TTTTG-CCTCTG-NACTACTATTTTCATGTGCTGAAA---T-GATT-ATATTA-TATGAT--A-TTA--AATTG-ATAGGTA-TACTTCTTTTGGGTA----AAATGGAAAG---AAACCAT-TCTTTTCCGATGGAGATTATGCTGACTGCAAAT-TCCATCGTGTANTAATCTTTGGAACAAACGG----GG---TTTCTGAAT-------AACTTA-T-TGGCAAT-----CTTCAAATTGTCTGAAGATATA----CACGAAACATTAGG-TCGACCAAGTATTT--TA-TTTTCCATAATTC-ATATTTGGA-TGTCCATCTTG-T-------CCACT--GGCAATAACA-CG-TT----TGATTTGCTGAACAATACAACACT-C-A-G--TTTTCCCGATTACATGTATTTCA-G-AAAGGAA--TTTCC-T---CATTGTAAAGGTCAATAATTTCTGTTTTT-G-TTTCTTCAAAAATTTCCTTTTCCATTTCTAAAATATCTCCCCAACT-----------------T-----A-TAAGCTGAATAGG---TGTAAAATTAACGAAGAAATACACTGCTGGGAAGATAAG-------TATTGANC--AAGCCCAAAAAC-TATAAAT-ACTGAAAGGC--TTGCCTAGA-AT---AGCATGAATTCTATT--GGTC--A--AGCATTAAC--AATAG-AAAGGG--GT----------G--TT-TATGAAT-A-G-ATT-GACAAACAGGTGAATGGTAC-A-TG-TGGTCAGTTTAA--GATT-TCTTAAGAAAAAATTGGTGG-G-AGTT--GA--GCT-AGAAATTTGCT------AA-ATGTTTCCA----ACATG-AAGGATTTC-ACAAGAAAAAA----ACAA-CAACC-CTGAAATGT--ATAATGCT-AC---C-TGAAGAA-AACTA-CAGGAAAGACTT--GCA--TAAGAC-ACTGAAATCAACT-CAGATTTA-CCTGTGGAAAGCAATA-TA-TGCTTGAGTAAC-TCTGT-G---ACCTA-AATTCAGACC---AAATG-TGAAT-CTTAGCTGAC-CAAATT-CTAAAG-TCTATTG-ATCAATCCAGCAGG-CAATTGAAAACTCT-ACCGGTC---TTTTGTANTTC
Reference ( family-866 ) : AGCGAATT-ACAAAAGA-CCGGTA-GAGTTTT-CAA-TTGCC-----TGCT------AGA-TTGATCAA-TAGACT---TTACAAT-TT----GG---TCAGCAAAGATTCACATTTGGTCTG-A--------ATT-TAGGTCA-CA-GAGTT-ACTC-AGG-T--ATGACAATGAAGTGACTACCTTTTCC-CCA-G-TG-T---G---G-----TGTGTTTA------TG-----ATTATT------AAT-----C-AT-TTTG-TTTCA--A--TG--T-CGTG-T-TTACA-TATTT-CTATGATTCAG--A-TTAGT--C-AG-TA-A----TCAGGGCATTA--ATTAAT--TTA-AAAAAAGAATTA-----AA-----T--CG---GCA-GTCA--GGTTATTGTA-GTATAGGAATGTTTGCACGTACA--GT-ATT---A-CTTAAATGATTTTT---T--CGCATTT-C-AGTATTTT-AAAAATATAATGCGT------------GTAC-----------AACCTTTCAGATGTGCTTTCAC----------CAT-------G--A--GATTTT--ATCACGGAA-CGG-GT--GGA---A--TTTTAGTTTTCATTCT-TTAATTTG----AAAGGGGGGT--GGG---GT-GA-TTTAAT-TTTTG-CCTCTG-NACTACTATTTTCATGTGCTGAAA---T-GATT-ATATTA-TATGAT--A-TTA--AATTG-ATAGGTA-TACTTCTTTTGGGTA----AAATGGAAAG---AAACCAT-TCTTTTCCGATGGAGATTATGCTGACTGCAAAT-TCCATCGTGTANTAATCTTTGGAACAAACGG----GG---TTTCTGAAT-------AACTTA-T-TGGCAAT-----CTTCAAATTGTCTGAAGATATA----CACGAAACATTAGG-TCGACCAAGTATTT--T--TTTTCCATAATTC-ATATTTGGA-TGTCCATCTTG-T-------CCACT--GGCAATAACA-CG-TT----TGATTTGCTGAACAATACAACACT-C-A-G--TTTTCCCGATTACATGTATTTCA-G-AAAGGAA--TTTCC-T---CATTGTAAAGGTCAATAATTTCTGTTTTT-G-TTTCTTCAAAAATTTCCTTTTCCATTTCTAAAATATCTCCCCAACT-----------------T-----A-TAAGCTGAATAGG---TGTAAAATTAACGAAGAAATACACTGCTGGGAAGATAAG-------TATTGANC--AAGCCCAAAAAC-TATAAAT-ACTGAAAGGC--TTGCCTAGA-AT---AGCATGAATTCTATT--GGTC--A--AGCATTAAC--AATAG-AAAGGG--GT----------G--TT-TATGAAT-A-G-ATT-GACAAACAGGTGAATGGTAC-A-TG-TGGTCAGTTTAA--GATT-TCTTAAGAAAAAATTGGTGG-G-AGTT--GA--GCT-AGAAATTTGCT------AA-ATGTTTCCA----ACATG-AAGGATTTC-ACAAGAAAAAA----ACAA-CAACC-CTGAAATGT--ATAATGCT-AC---C-TGAAGAA-AACTA-CAGGAAAGACTT--GCA--TAAGAC-ACTGAAATCAACT-CAGATTTA-CCTGTGGAAAGCAATA-TA-TGCTTGAGTAAC-TCTGT-G---ACCTA-AATTCAGACC---AAATG-TGAAT-CTTAGCTGAC-CAAATT-NTAAAG-TCTATTG-ATCAATCCAGCAGG-CAATTGAAAACTCT-ACCGGTC---TTTTGTANTTC
gi|1 : AGCGAATTGACATAAGAACCGGTA-GAGTTTTTCAA-TTGCC-----TGCT------AGAATTGATCAA-TAGACT---TTACA-T-TT----GG---TCAGCAAAGATTCACATTTGGTCTG-A--------ATT-TAGGTCA-CATGAGTT-ACTC-AGG-T--ATGACAATGAAGTAACT-CCTTTTCC-CCATG-TGGT---G---GGTG--TGTGTTTACTAGTATG-----ATTATTC-----AAT-----C-AT-TTTG-TTTCAT-A--TG--TTCGTGAT-TTACA-TATTCACTATGATTCAA--A-TTAGT--C-AG-TA-AA---TCAGGGCATTA--ATTAAA--TTA-AAAGAA----TA-----AA--------CG---GCAAGTCAAAGGTTATTGTACGTA-AAGAATGTTTGCACGTACAATGT-ATT---AACTTAAATGATTTTT---TAATGCTTTT-CCAGTATTTTCAAAAATATAATGCGT------------GTACTGCTGGTAAACAACCTTTCAGATGTGCTTTC------------CA--------A--A--GATTTCTAATCACAGAAACGGTGTAAGGA---A--TTTTAGTTTTCATTCTATTAATTTG----AC----------------------TTTAAT-TTTTGGCCTCTG-AACTACTATTTTCATGTGC-GAAAAATT-GATTTATATTA-TATGAT--A-TTATAAATTG--TAGGTAATACTTCTTTTGGGTA----AAATGGAAAAGAAAAACCATATCTTTTCTGATGGAGATTATGCTGACTGCAAAT-TCCATCGTGTACTAATCTTTGGAACAAACGG----GG---TTTCTGAAT-------AACTTA-T--GGCAAT-----CTCAAAATTGTCTGAAGATATA----CA-GAAACATTAGGATCGACCAAGTATTT---------------------ATTTGGAATGTCCATCTTGGT-------CCACT--G-CAA-AACAACG-TT----TGATTTGCTGAACA-TACAACACC-C-AAG--TTTTCCTGATTCC--------CA------------------T---CATTGTAAAGGTCAATAATTTCTGTTTTTTG-TTTCTTCAAAA--TTTCTTT-----------AATATCTCCCCAACT-----------------T-----ACTAAACTGAATAGG---TGTAAAATTAACGAAGAAATACACTGCTGGGAAGATAAGTAGGCCATATTGAGCCGAAGCCCGAAAAA-TATAAATAACTGAAAGGCATTTGCCTAGACATATAAGCAATAA-TCTATG--GGTCCAA--GGCATTAACTAAATAGAAAAGGG--GT----------GT-TT-TATGAAT-A-GAATT-GAC-AACAGGTGAATGGTAC-G-TG-TGGTCAGTTTTA--CACT-TCTTAAG-AAAAATTGAAGG-GAAGTTGAGA--GCTAAGAAATTTGCT------AA-ATGTTTCCA----ACATGAAAGGATTTCAACAAGAAAAAA----ACAATCAA-C-CTGAAATGTAAATAATGAT-AC---CGTGAAG---------------AGACTT--GCA--TAAGACAACTG-AATCAACTGCAGATTTA-CCTGTGGAAAGCAATG-TA-TGCTTGAGTAAC-TCTGT-GGACACATAGAATTCAGACCAAAAAATGTTGAATACTTAGCTGACGCAAATTACTAAAATTCTATTGAATCAATCCGTCAGGACAATTG-AAACTCTAACCGGTCTTATTTTGTATTTC
gi|10 : ATTGGTGG-G-AATT--GA--GCT-AGAAGTTTGTTTTAATGAA-ATGTAT-CATGTTACCTG-AAGAAAACT-ACAGGAAAGAGTTGCACAA--GACA-CTGAAATgct
gi|10 : TGAAATGT--ATCATGTT-AC---C-TGAAGAA-AACTA-CAGGAAAGAGTT--GCA--CAAGAC-ACTGAAATCAACT-CAGATTTA-TCTGTGGAAAGCAATA-TA-TGCTCGAGTAAC-TCTGT-G---ACCTA-AATTCAGACC---AAATG-TGAAT-CTTGGCTCAC-CAAATT-GTAAAG-TCTATTG-ATCAATCCAGCAGG-TAATTGAAAACTCT-ACCAGTC---TTTTATAATTcaactcagatttatctgtggaaagcaatatatgctcgagtaactctgtgacctaaattcagaccaaatgtgaatcttggctcaccaaattgtaaagtctattgatcaatccagcaggtaattgaaaactctaccagtcttttataatt
gi|11 : attggtgggaattgagctagaagtttgttttaaTCTTTGATACAAACAG----AGGAATTCTTAAATTTGTAGTAACTTA-T--GACAAT-----CTTCACATTATCTGAAGATATAAGTACATGTAATATTAGG-TCGACCATGTAATC--TA-TTTTCTTTAATTC-ATCTTTGGA-TGTCCATTTTG-TGCATCAACAATT--AGCAGTAACA-CA-CTTTTATAATCTATTGAATAATTCAACACT-C------------------CA---ATTTCA-GAAAAGGAA--TTTTCGT---CATTGCAAAGATGAATA
gi|12 : AGCGAATT-ACAAAAGA-CCAGTA-GAGTTTT-CAA-TTGCC-----TGTT------TGA-TTGATCAA-TAGACT---TTACAAT-TT----GG---TCAGCAAAGATTCACAATTGGTCTG-A--------ATT-TCGGTCA-CA-GAGTT-ACTC-AAG-T--ATGACCATGAAGTGACAACTTTTTTT-CC-------T---C---A-----TGTGTGTG------TG-----------------AAT-----C-AG-TTTG-CTT-A-----------CGTG-CAATACATTATTT-CTATGAGTCAGCAA-TCAGT--CGAG-TG-A----
gi|13 : cAGCGAATT-ACAAAAGA-CCGGTA-GAGTTTT-CAA-TTGCC-----TGCT------ACA-TTGATCAA-TAGACT---TTACAAT-TT----GG---TCAGCAAAGATTCACATTTGGTCTG-A--------ATT-TAGGTCA-CA-TAGTT-ACTC-AGG-T--ATGACAATGAAGTGACTACCTTTTCT-CCA-G-TG-T---G---G------GTGTTTA------TG-----ACTGTTA-----AAT-----C-A--------------------------------------TTT-CTAAGATTCAG--A-TTAGT--C-AT-TA-A----TCAGGGCATaggca
gi|14 : cAGCGAATT-ACAAAAGA-CCGGTA-GAGTTTT-CAA-TTGCC-----TGCTAGTGCTAGA-TTGATCAA-TAGACT---TTACAAT-TT----GG---TCAGCAAAGATTCACATTTGGTCTG-A--------ATT-TAGGTCA-CA-GAGTT-ACTC-AGG-T--ATGACAATGAAGTGACCAACTTTTCC-CC--G-TG-TG--G---G-----TGTGTTCA------TG-----ATTATT------
gi|15 : CATG-AAGAATTTC-AAAGAAAAAAA----ACAA-CAACCTCTAGAA-----ACTATGCTCACATAC-TGAACGA-AACTACCAGGAAAG-CTTAAGGAATTAAGA--ACTGAATACAACT-CAG-TTTAGCCTGTGGAAAGCAAT--TACTGC-TGATCAACTTCTGT------TCAA-GATTCAGA-C---ACATG-TGAAT-CTTA
gi|16 : AATAATTTCTTTCTTT-G-CTTCTTCAAAAATTTC-TTTTCCATTTTTAAAATATCGTTCCAGTTCATTATTTTTTAATGGTT-----A-TAAGCTGAAT-GGCATTGTAAAATTCACAAAAGAATACACTGCTCGGTAGATTTG-------TA-TAAAC--AAGACCAAAAGC-TATGAAT-A
gi|17 : GAAT--ACAAAAGA-CCGGTA-GAGTTTT-CAA-TTGCTGCTAGTGCT------AGA-TTGATCAA-TAGACTACATTCCCAC-TTCTCAGG---TCCGC--AGATTCACATTTGGTCTGCA--------CTC-TAGGTCA-CA-AGATT-ACTC-AG
gi|18 : CATTAAC--AATAG-AAAGGG--GT----------G--TT-TATGAAT-AAG-ATT-GACAAACAGGTGAATGGTAC-A-T--TGGTCAGTTTAA--GATT--CTTAAG-AAAAATTGGTGGAG-AGTT--GA--GCT-AGAAATTTGCT------AA-ATGTT
gi|19 : CGAATT-ACAAAAGA-CCGGTA-GAGTTTT-CAT-TTGCC-----TGCT------AGA-TTGATCAA-TAGACT---TTACAAT-TT----GG---TCAGCAAAGATTCACTTTTGGTCTG-A--------ATT-TAGGTCA-CA-GAGTT-ACTC-A
gi|2 : AGCGAATT-ACATAAGA-CCGGTA-GAGTTTT-CAA-TTGCC-----TGCT------AGA-TTGA-AAA-TAGACT---TTACAAT-TT----GG---TCAGCAAAGATTCACATTTGGTCTG-A--------ATT-TAGGTCA-CA-GAGTT-ACTC-AGG-T--ATGACAATGAAGTGACTACCTTTTCC-CCA-G-TG-T---G---G-----TGTGTTTA------TG-----ATTATC------AAT-----C-AT-TTTG-TTTCA--A--TG--T-CGTG-T-TTACA-TATTT-CTATGATTCAA--A-TTAGT--C-AG-TA-A----TCAGGGCATTA--ATTAAT--T---AAAAAAGAATTA-----AA-----T--CG---GCT-GTCA--AGGTATTGTA-GTAAAGGAATGTTTGCACGTACAT-GT-ATA---T-CTTAAATGATTTTTTTAT--TGCATTT-C-AGTATTTCAAAAAATATAATGCTT------------GTAC-----------AA-CTTTCAGATGTGCTTTC-------------------------A--GATTTT--ATCACAGAA-T----------------TTTTAGTTTTCATTCT-TTAATTTG----AAAGGGGGGTG-GGG---GT-GACTTTAAT-TTTTG-CCTCTGAAACTACTATTTTCATGTGCTGAAATT-T-GATT-ATATTATTATGATTAA-TTA--AATTGAATAGGTA-TACTTCTTTTGGGTA----AAATGGAAAG---AAACCGT-TCTTT--CGATGAAGATTATGC-GACTGCAAATATCCATCGTGTAATAATC-TTGGAACAAACAG----GG---TTTCTGAAT-------AACTTA-T-TGGCAAT-----CTTCAAATTGTCTGAAGATATA----CACGAAACATTAGG-TCGACCCAGTATTT--T--TTTTCTATAATTCAATATTT--A-TGTCCATCTTG-TC------CCACT--GGCAATA--A-CG-TT----TGATTTGCTG-ACAATACAACACT-C-A-G--TTTTCCCGATTACA-GT-TATCA-G-AAAGGAA--TTTCC-T---CATTGTAAAGGTCAATAATTTCTGTTTTT-G-TTTCTTCAAAAATTTCCTTTTCCATTTCTAAAATATCTCCCCAACT-----------------T-----A-TAAACTGAAT-GG---TGTAAATTTAACGAAGAAATACACTGCTGGGAAGATAAG-------TATTGACC--AAGCCCAAAAACATATAAAT-ACTGAAAGGC--TTGCCTAGA-AT---AGCATGAATTCTATT--GGTC--A--AGCATTAAC--AATAG--AAGGG--GT----------G--TT-TATGAAT-A-G-ATT-GACAAACAGGTGAATGGTAC-AGTG-TGGTCAGTTTAA--GAGT-TCTTAAGAAAAAATTGGT-G-G-AGTT--GA--GCT-AGAAATTTGCT-------A-ATGTTTCCA----ACAT--AAGGATTTC-ACAAG---AAA----ACAA-CAACC-CTGAAATGT--ATAATGCT-AC---C-TGAAGAACAACTA-CAGGAAAGACTT--GGA--TAAGAC-ACTGAAATCAACT-CAGATTTA--CTGT-GAAAGCAATATTA-TGCTTGAGTAAC-TCTGTGG---ACCTA-AATTCAGACC---AAATG-TGAAT-CTTAGCTGAC-CAAATT-CTAAAG-TCTATTG-ATCAATCCAGTAGG-CAATTG-AAACTCT-A-CGGTC----TTTGTATTTC
gi|20 : TTTTATT--GAAC--ATTGACAT-AAC--AATAG-A---GG--GTAATACTCTTTG--TTATATTAAT-A-G-ATT-GCCAAACAGATGAATGGTAC-A-TG-TGGTCAATTTAA--GATT-TCTTAAGA
gi|21 : AGTGAATT-ACAAAAGA-CCGGTA-GAGTTTT-CAA-TTACC-----TGCT------AGA-TTGATCAATTAGACT---TTACAAT-TT----GG---TCAGCAAAGATTCACATTTGGTCT--A--------ATT-
gi|22 : GATTATGCTGACTGCAAAT-TCCATCGTGTACTAATCTTTGGAACAAACGG----GG---TTTCTGAAT-------AACTTA---TGGCAAT-----CTTCaaa
gi|23 : GCGAATT-ACAAAAGA-CCGGTA-GAGTTTT-CAA-TTGCC-----TGCT------AGA-CTGTTCAA-TAGACT---TTACAAT-TT----GG---
gi|24 : GCGAATT-ACAAAAGA-CCGGCT-GAGTTTT-CAA-TTGAC-----TTCT------GGA-TAGATCAA-AAGAC
gi|25 : AGATTTA-CCTGTGGAAAGCAATA-TA-TGCTTGGGTAAC-TCc
gi|3 : TCTTTTGGGTT----AAATGGAAAG---AAACTAT-T-------------GATTATGTAGATTACAAAT-TCCATC-----------TTTGGAACAAACAG----GG---TTTCTGAAT-------AACTTA-A-TGGCAATTTAATCTTTAAATTGTCTGAAAATATA----CACGAAACATTAGG-TCGACCAAATATTT--TA-TTTT----------------------TCCATC--------------------GCAATAACA-CA-TT----AAATTTGCTGAACAATACAAAACT-CCA-G--TTTTCCCGATTACATGTATTTCA-GGAAAGGAA--TTTCCCT---CATTGTAAAGGTCAATAATTTCTTTCTTT-G-TTTCTTCGAAAATTTC-TTTTCCATTTCTAAAATATCTCCCTAACT-----------------TTTATTA-TAAGCTGAATAGG---TATAAAATTAACGAAGAAATACACTGCTGGGAAGATAAG-------TATTGACC--AAGCCCCAAAAC-TATAAAT-ACTGAAAGGC--TTGCCTAGA-AT---AGCATGAATTCTATT--GGTC--A--AGCATTAAC--AATAT-AGGGAG--GT----------G--TT-TATGAAT-A-G-ATT-GACAAACAGGTGAATGGTAC-T-AG-TGATCAGTTTAA--GATT-TCTTAAAAAAAAATTGGTGG-G-AGTT--GA--GTT-AGAAATTTGCT------AA-ATGTTTCCA----ACATG-AAGGATTTC-ACAAGAAAAAA----ACAA-CAACC-CTGAAATGT--ATAATTCT-AC---C-TGAAGAA-AACCA-CAGGAAAGAGTT--GCA--TAAGAC-ACTGAAATCAACT-CAGATTTA-CCTGTGGAAAGCAATA-TA-TGCTTGAGTAAC-TCTGT-G---ACCTA-AATTCAGACC---AAATG-TGAAT-CTTAGCTGAC-CAAATT-CTAAAG-TCTATTG-ATCAATCCAGTAGG-CAATTGAAAACTCT-A-CAGTC---TTTTGTAATTC
gi|4 : TTATTGTA-GTATAGGAATGTTTGCATGTA-G--G--------A-CCTACATG--------------------T-AGTATTTG-AAAAATATAATGCATACATGTACTACTGTAC-----------AACCTTTCAGATGTGCTTTCACTTATACTTACCAT-------GCAA--GATTTT--ATCACGGAA-CGGTGT--AGA---AATTTTTAGTTTTCTTTCT-TTAATTTG----AAAGGGGGTTAAGGG---GTTGAGTTTAATCTTTTG-CCTCTG-TACTACTATTTTCATGTGCTGAAA---TTGATT-ATATTA-TATGAT--AATTA--AATTG-ATAGGTG-TACTTCTTTTGGGTATTTAAAATGGAAAG---AACCCAT-TCTTTTCTGATGGAGATTATGCTGATTGCAAAT-TCCATCATGTAATAATCTTTGGAACAAACAGCTAGGG---TTTCTGAAT-------AACTTAATATGACAAT-----CTTCAAATTGTCTGAAGATATA----CACGAAACATTAGT-TCGACCAAGTATTT--TATTTTTCCATAATTC-ATATTTGGA-TGTCCATCTTG-T-------CCACT--GACAATAACA-TG-TT----TAATTTGCTGAACAATACAACACTCC-A-A--TTTTCCCGATTACATGTATTTCAGG-AAAGGAA--TTTCC-TTCATATTGTAAAGGTCAATAATTgctg
gi|5 : CC-----TGCT------TGA-TTGATCA--TAGGCT---ATAGAAT-TT----GG---TCAG----------------------A--------ATG-TAGATCG-CA-GAGT---------G-T--ATGACAATGAGGTGATAACCTTTTCC-CCG-G-TG-T---GTGCG-----TGTGTTTA------TG-----ATTATC------AATTGAATC-GT-TGTG-TTTAATTA--T---T-CTTG-T-TTGCA--ATTT-TGATTGTTC------TTGCTTGC-AT-TA------TGAAGGCACAA--TTTAAT--TTA-GAAAAGGAATTATTTCTAACTTGCT--TGATTGCA-GTCA--GGCTACAGTA-GTATAGGTATGTATACATGCATA--ATTATTGTGA-TTTTAATGATTTTT---CTCCGCATTTTC-AGTATTTT-GAAAATATAATACAT------------GCACTATCATGC---AACCGTTCAGATGTGCAATCACA---------CATTAAGCAAG--ATAGATTTT--ATTACCGAA-CGG--T--GCATTAA--TTTTAGTTTTCATTCT-TCATTTAGCGGAAAAGGGGGGT--GGGTGGGT-AA-T--AAT-TT--G-CTTTTG-CGCTTCTATTTTCATGTGTTGAA---------T-ATA-----ATAAT--------------------TA-TACTTCTTTTGTGTT----AAGTGAAAAG---AAACCAT-TCTCT
gi|6 : aCATTAGG-TTGACCAAGTATTTATT--TTTTCCATAATTC-ATATTTGGA-TGTCCATCTTG-----------AATGGGGGAATAAC--CGTTT----TGA--TGCTG-GCAATACAA-ACT-C-C-GTTTTTTCCCGATT-C-TGTATTTAG-G-AAAGGAATGTTCCC-T---CATTGTAAAGGT-AATAA-TTATGTTTTT-GTTTTCTTCAAAAATTTCT---------------ATA-CTCC---ACT-----------------T-----A-TAAGCTGAATAGG---TGT-AAATTCATGA--AAAT--ACTGCT-GGAAAATAGA-------TATGGAAC--CAG-CCAAAAAC-TATAAAT-ACT-AAAGCG--TTGC---AA-AT---AGCATGAAT--CATTAGGGT------AGCCTTAAA--CAT-G-AAAGCGACGT----------GTCTT-TATCAGTCA-G-ATTCCACAAACAGATGAAT-GTACAA-TGATGGTCAGTTTAGATGATTGTCTGCAG-ACAAATTGGTTC-G-AG-T--GACGGTC-AAAAA-TTGCT------AATGCGTTTCCA----ACAT
gi|7 : CGAATT-ACAAACGATCCGGTACGAATTCT-CAAATTGCC-----TGCT------AT--TTAATCAAATA---T---TCA-AATACT----AGACCTTAATACTGATTCACATT-GGTCTG-A--------ATTGTAG-TCAACA--AGTTGACTCCAGGCT--ATGACAATCGAGGGACTACCTTTTCC-CCA-G-TG-T---G---GC----TGTGTTTA------TG-----ATTATTTTTTAAAAT-----C-AT-TTTG-TTTCA--A--TGTTT-CGTG-T-TTACA-TATT---CATG-TTCAG--A-TTA-T--C-TG-TA-A----TCA-GGCATTATGCTTAAT--TT---AAAAAGAATTA-----AA-----T---G---ACC-GTCA--GG-TATTGTA-G-ATAGGAATGTTTc
gi|8 : GAAT--ACAAAAGA-CCGGTA-GAGTTTT-CAA-TTGCTGCTAGTGCT------AGA-TTGATCAA-TAGACTACATTCCCAC-TTCTCAGG---TCCGC--AGATTCACATTTGGTCTGCA--------CTC-TAGGTCA-CA-AGATT-ACTC-AGG-TGCATGCGCCTGCACT-ACTACCTTGCCCTCCT-GCTG-TCAAG---GTCGACTGCCTCTA------TGGATCTATTGTTTA----AAC-----CTATCTTTGCTTTCAC-A--TGT-T-CGTGAT-TTAC---ATTT-CTATGATTCAG--ATTTAGT--C-CGCTACATTCCTCAGGACATTA----TAAT--TTAGAAAAAAGAATTA-----AA-----TGACC---GCA-GTCA--GGTCATTGTA-Gagcctgtttaccgcgtatgcacattaatg
gi|9 : AGCGAATT-ACAAAAAA-TCGGTA-GAATTTT-CAA-TTGGC-----TGCT------GGA-TTGATCAA-T----------------TT----GG---TCCGCCAAGTATAACATTTGGTCTG-ACCGTCTGAATG-GAGGTCA-CA-TTGTT-AATT-AGG-T--ATGACAATGAAGTGACAACCTTTT-T-TCA-C-TG-T---GC--G-----AGTGCATG------TG------------------------------TTTG-TTTGA--AATTC--T-CTTA-T-TTATATTATAT-CTAGCATTCAG--A-TTAAT--T-AG-CA-A----TCAGAGCA-TA--ATCAACAATTA-AAAAA
Alignments
lowQualScore : 1111111111111111111111111
lowQualScore : 11111 111 1111 11111111 11 3333333333333 111111 33333333333333333 1111111111 44444444444 111 111 111111 111 44444444444444444444 11 555555555555555 5555555555555555 22 2222 77777777777 3333333333333333333333333 11 1 3333333333 1 2222 33333333333333 11 1 11 444444 1 1 3333333333333333 1 11111 111 111 1111 111 2222222 2222 11111 1111 111 1111 3333333333333333 1111 222222 11111 111 11111 111111111111111 66666666666666666666666 1 111 2222222 11 11 1 111 11 11111 3333333333333 111111 1 111111 1111 1111 11 111 11 11 22222 111 1 1 1 1 1 1 111 2222
lowQualScore : 3 6 3 3 3 44444 888888 2 5 000 3 3333 555 3 6 22222222 3 3 55 3 3 4 66 1 4 00 4 4 2222222222222 222222 00000000000000000 4444444444 5 5 00000000000 000 333 5 66 5 1 66 5 5 777777 0 666 99 99 66666666666666666666 99 11 5 6 0 6 444444444444444 3 1111111111111111 00 4 1111 66666666666 2 4444444444444444444444444 33 4 0 2 9999999999 0 1111 3 2 22222222222222 33 0 11 3 111111 0 3 0 5555555555555555 0 88888 444 8 666 0 6 8 3 3 0 4444 111 1111111 4444 66666 7777 3 6 333 6666 6 2 6 9999999999999999 1 6 6 4444 7 2 6 222222 7 99999 888 99 66666 2 8 8 0 888888888888888 0 77777777777777777777777 8 0 444 0 0 0 0 5 6666666 0 1 11 5 8 8 2 33 2 0 777 11 11 77777 99 777 99 5555555555555 6 6 6 6 6 111111 99 6 5 2 6 6 99 99 6 999999 6 7777 8 8 0 7777 8 8 11 1 8 444 8 3 8 8 0 11 11 8 0 8 77 88 6 6 22222 8 444 8 8 0 0 0 0 0 5 666 0000 1
lowQualScore : . . . . . ..... ...... . . ... . .... ... . . ........ . . .. . . . .. . . .. . . ............. ...... ................. .......... . . ........... ... ... . .. . . .. . . ...... . ... .. .. .................... .. .. . . . . ............... . ................ .. . .... ........... . ......................... .. . . . .......... . .... . . .............. .. . .. . ...... . . . ................ . ..... ... . ... . . . . . . .... ... ....... .... ..... .... . . ... .... . . . ................ . . . .... . . . ...... . ..... ... .. ..... . . . . ............... . ....................... . . ... . . . . . ....... . . .. . . . . .. . . ... .. .. ..... .. ... .. ............. . . . . . ...... .. . . . . . .. .. . ...... . .... . . . .... . . .. . . ... . . . . . .. .. . . . .. .. . . ..... . ... . . . . . . . . ... .... .
lowQualScore : 1 2 1 1 1 33333 222222 9 7 888 1 1111 444 2 7 11111111 3 6 66 6 6 4 11 3 4 99 4 4 3333333333333 888888 88888888888888888 6666666666 0 6 44444444444 999 222 0 99 0 4 99 0 0 888888 1 777 22 88 00000000000000000000 00 00 7 7 8 0 888888888888888 2 0000000000000000 88 2 2222 00000000000 5 5555555555555555555555555 88 2 0 5 0000000000 0 2222 2 5 55555555555555 22 0 00 2 555555 0 2 0 2222222222222222 0 44444 000 0 000 2 0 0 2 8 7 2222 777 7777777 2222 77777 0000 2 7 333 2222 7 5 7 2222222222222222 0 7 7 2222 3 5 7 555555 2 22222 333 22 00000 5 0 0 8 666666666666666 8 00000000000000000000000 0 6 000 8 6 8 8 0 0000000 8 0 00 0 0 0 5 88 5 0 555 66 00 88888 22 555 22 0000000000000 7 7 7 7 7 555555 22 7 5 5 7 7 22 22 7 222222 7 0000 0 0 8 0000 0 0 00 0 0 000 0 8 0 0 8 00 00 0 8 0 77 33 7 7 00000 0 000 0 0 0 0 0 0 0 5 000 8888 0
consensus : AGCGAATT-ACAAAAGA-CCGGTA-GAGTTTT-CAA-TTGCC-----TGCT------AGA-TTGATCAA-TAGACT---TTACAAT-TT----GG---TCAGCAAAGATTCACATTTGGTCTG-A--------ATT-TAGGTCA-CA-GAGTT-ACTC-AGG-T--ATGACAATGAAGTGACTACCTTTTCC-CCA-G-TG-T---G---G-----TGTGTTTA------TG-----ATTATT------AAT-----C-AT-TTTG-TTTCA--A--TG--T-CGTG-T-TTACA-TATTT-CTATGATTCAG--A-TTAGT--C-AG-TA-A----TCAGGGCATTA--ATTAAT--TTA-AAAAAAGAATTA-----AA-----T--CG---GCA-GTCA--GGTTATTGTA-GTATAGGAATGTTTGCACGTACA--GT-ATT---A-CTTAAATGATTTTT---T--CGCATTT-C-AGTATTTT-AAAAATATAATGCGT----GTACTACCGTNC---AACCTTTCAGATGTGCTTTCAC----------CAT---GCA----AGATTTT--ATCACGGAA-CGGTGT--A-GAA--TTTTAGTTTTCATTCT-TTAATTTG----AAAGGGGGGT--GG--GGGTGA-TTTAAT-TTTTG-CCTCTG-NACTACTATTTTCATGTGCTGAAA---T-GATT-ATATTA-TATGAT--A-TTA--AATTG-ATAGGTA-TACTTCTTTTGGGTA----AAATGGAAAG---AAACCAT-TCTTTTCCGATGGAGATTATGCTGACTGCAAAT-TCCATCGTGTANTAATCTTTGGAACAAACGG----GG---TTTCTGAAT-------AACTTA-T-TGGCAAT-----CTTCAAATTGTCTGAAGATATA----CACGAAACATTAGG-TCGACCAAGTATTT-TATTTT-CCATAATTC-ATATTTGGA-TGTCCATCTTG-T-------CCACT--GGCAATAACA-CG-TT----TGATTTGCTGAACAATACAACACT-C-A-G--TTTTCCCGATTACATGTATTTCA-G-AAAGGAA--TTTCC-T---CATTGTAAAGGTCAATAATTTCTGTTTTT-G-TTTCTTCAAAAATTTCCTTTTCCATTTCTAAAATATCTCCCCAACT-----------------T-----A-TAAGCTGAATAGG---TGTAAAATTAACGAAGAAATACACTGCTGGGAAGATAAG-------TATTGANC--AAGCCCAAAAAC-TATAAAT-ACTGAAAGGC--TTGCCTAGA-AT---AGCATGAATTCTATT--GGTC--A--AGCATTAAC--AATAG-AAAGGG--GT----------G--TT-TATGAAT-A-G-ATT-GACAAACAGGTGAATGGTAC-A-TG-TGGTCAGTTTAA--GATT-TCTTAAGAAAAAATTGGTGG-G-AGTT--GA--GCT-AGAAATTTGCT------AA-ATGTTTCCA----ACATG-AAGGATTTC-ACAAGAAAAAA----ACAA-CAACC-CTGAAATGT--ATAATGCT-AC---C-TGAAGAA-AACTA-CAGGAAAGACTT--GCA--TAAGAC-ACTGAAATCAACT-CAGATTTA-CCTGTGGAAAGCAATA-TA-TGCTTGAGTAAC-TCTGT-G---ACCTA-AATTCAGACC---AAATG-TGAAT-CTTAGCTGAC-CAAATT-CTAAAG-TCTATTG-ATCAATCCAGCAGG-CAATTGAAAACTCT-ACCGGTC---TTTTGTANTTC
Reference ( family-866 ) : AGCGAATT-ACAAAAGA-CCGGTA-GAGTTTT-CAA-TTGCC-----TGCT------AGA-TTGATCAA-TAGACT---TTACAAT-TT----GG---TCAGCAAAGATTCACATTTGGTCTG-A--------ATT-TAGGTCA-CA-GAGTT-ACTC-AGG-T--ATGACAATGAAGTGACTACCTTTTCC-CCA-G-TG-T---G---G-----TGTGTTTA------TG-----ATTATT------AAT-----C-AT-TTTG-TTTCA--A--TG--T-CGTG-T-TTACA-TATTT-CTATGATTCAG--A-TTAGT--C-AG-TA-A----TCAGGGCATTA--ATTAAT--TTA-AAAAAAGAATTA-----AA-----T--CG---GCA-GTCA--GGTTATTGTA-GTATAGGAATGTTTGCACGTACA--GT-ATT---A-CTTAAATGATTTTT---T--CGCATTT-C-AGTATTTT-AAAAATATAATGCGT----GTACTGCCG------AACCTTTCAGATGTGCTTTCAC----------CAT---G------AGATTTT--ATCACGGAA-CGGTGT--G-GAA--TTTTAGTTTTCATTCT-TTAATTTG----AAAGGGGGGT--GG--GGGTGA-TTTAAT-TTTTG-CCTCTG-NACTACTATTTTCATGTGCTGAAA---T-GATT-ATATTA-TATGAT--A-TTA--AATTG-ATAGGTA-TACTTCTTTTGGGTA----AAATGGAAAG---AAACCAT-TCTTTTCCGATGGAGATTATGCTGACTGCAAAT-TCCATCGTGTANTAATCTTTGGAACAAACGG----GG---TTTCTGAAT-------AACTTA-T-TGGCAAT-----CTTCAAATTGTCTGAAGATATA----CACGAAACATTAGG-TCGACCAAGTATTT-TATTTT-CCATAATTC-ATATTTGGA-TGTCCATCTTG-T-------CCACT--GGCAATAACA-CG-TT----TGATTTGCTGAACAATACAACACT-C-A-G--TTTTCCCGATTACATGTATTTCA-G-AAAGGAA--TTTCC-T---CATTGTAAAGGTCAATAATTTCTGTTTTT-G-TTTCTTCAAAAATTTCCTTTTCCATTTCTAAAATATCTCCCCAACT-----------------T-----A-TAAGCTGAATAGG---TGTAAAATTAACGAAGAAATACACTGCTGGGAAGATAAG-------TATTGANC--AAGCCCAAAAAC-TATAAAT-ACTGAAAGGC--TTGCCTAGA-AT---AGCATGAATTCTATT--GGTC--A--AGCATTAAC--AATAG-AAAGGG--GT----------G--TT-TATGAAT-A-G-ATT-GACAAACAGGTGAATGGTAC-A-TG-TGGTCAGTTTAA--GATT-TCTTAAGAAAAAATTGGTGG-G-AGTT--GA--GCT-AGAAATTTGCT------AA-ATGTTTCCA----ACATG-AAGGATTTC-ACAAGAAAAAA----ACAA-CAACC-CTGAAATGT--ATAATGCT-AC---C-TGAAGAA-AACTA-CAGGAAAGACTT--GCA--TAAGAC-ACTGAAATCAACT-CAGATTTA-CCTGTGGAAAGCAATA-TA-TGCTTGAGTAAC-TCTGT-G---ACCTA-AATTCAGACC---AAATG-TGAAT-CTTAGCTGAC-CAAATT-CTAAAG-TCTATTG-ATCAATCCAGCAGG-CAATTGAAAACTCT-ACCGGTC---TTTTGTANTTC
gi|1 : AGCGAATTGACATAAGAACCGGTA-GAGTTTTTCAA-TTGCC-----TGCT------AGAATTGATCAA-TAGACT---TTACA-T-TT----GG---TCAGCAAAGATTCACATTTGGTCTG-A--------ATT-TAGGTCA-CATGAGTT-ACTC-AGG-T--ATGACAATGAAGTAACT-CCTTTTCC-CCATG-TGGT---G---GGTG--TGTGTTTACTAGTATG-----ATTATTC-----AAT-----C-AT-TTTG-TTTCAT-A--TG--TTCGTGAT-TTACA-TATTCACTATGATTCAA--A-TTAGT--C-AG-TA-AA---TCAGGGCATTA--ATTAAA--TTA-AAAGAA----TA-----AA--------CG---GCAAGTCAAAGGTTATTGTACGTA-AAGAATGTTTGCACGTACAATGT-ATT---AACTTAAATGATTTTT---TAATGCTTTT-CCAGTATTTTCAAAAATATAATGCGT----GTACTGCTGGTAAACAACCTTTCAGATGTGCTTTC------------CA----A------AGATTTCTAATCACAGAAACGGTGTAAG-GAA--TTTTAGTTTTCATTCTATTAATTTG----AC---------------------TTTAAT-TTTTGGCCTCTG-AACTACTATTTTCATGTGC-GAAAAATT-GATTTATATTA-TATGAT--A-TTATAAATTG--TAGGTAATACTTCTTTTGGGTA----AAATGGAAAAGAAAAACCATATCTTTTCTGATGGAGATTATGCTGACTGCAAAT-TCCATCGTGTACTAATCTTTGGAACAAACGG----GG---TTTCTGAAT-------AACTTA-T--GGCAAT-----CTCAAAATTGTCTGAAGATATA----CA-GAAACATTAGGATCGACCAAGTATTT--------------------ATTTGGAATGTCCATCTTGGT-------CCACT--G-CAA-AACAACG-TT----TGATTTGCTGAACA-TACAACACC-C-AAG--TTTTCCTGATTCC--------CA------------------T---CATTGTAAAGGTCAATAATTTCTGTTTTTTG-TTTCTTCAAAA--TTTCTTT-----------AATATCTCCCCAACT-----------------T-----ACTAAACTGAATAGG---TGTAAAATTAACGAAGAAATACACTGCTGGGAAGATAAGTAGGCCATATTGAGCCGAAGCCCGAAAAA-TATAAATAACTGAAAGGCATTTGCCTAGACATATAAGCAATAA-TCTATG--GGTCCAA--GGCATTAACTAAATAGAAAAGGG--GT----------GT-TT-TATGAAT-A-GAATT-GAC-AACAGGTGAATGGTAC-G-TG-TGGTCAGTTTTA--CACT-TCTTAAG-AAAAATTGAAGG-GAAGTTGAGA--GCTAAGAAATTTGCT------AA-ATGTTTCCA----ACATGAAAGGATTTCAACAAGAAAAAA----ACAATCAA-C-CTGAAATGTAAATAATGAT-AC---CGTGAAG---------------AGACTT--GCA--TAAGACAACTG-AATCAACTGCAGATTTA-CCTGTGGAAAGCAATG-TA-TGCTTGAGTAAC-TCTGT-GGACACATAGAATTCAGACCAAAAAATGTTGAATACTTAGCTGACGCAAATTACTAAAATTCTATTGAATCAATCCGTCAGGACAATTG-AAACTCTAACCGGTCTTATTTTGTATTTC
gi|10 : ATTGGTGG-G-AATT--GA--GCT-AGAAGTTTGTTTTAATGAA-ATGTAT-CATGTTACCTG-AAGAAAACT-ACAGGAAAGAGTTGCACAA--GACA-CTGAAATgct
gi|10 : TGAAATGT--ATCATGTT-AC---C-TGAAGAA-AACTA-CAGGAAAGAGTT--GCA--CAAGAC-ACTGAAATCAACT-CAGATTTA-TCTGTGGAAAGCAATA-TA-TGCTCGAGTAAC-TCTGT-G---ACCTA-AATTCAGACC---AAATG-TGAAT-CTTGGCTCAC-CAAATT-GTAAAG-TCTATTG-ATCAATCCAGCAGG-TAATTGAAAACTCT-ACCAGTC---TTTTATAATTcaactcagatttatctgtggaaagcaatatatgctcgagtaactctgtgacctaaattcagaccaaatgtgaatcttggctcaccaaattgtaaagtctattgatcaatccagcaggtaattgaaaactctaccagtcttttataatt
gi|11 : attggtgggaattgagctagaagtttgttttaaTCTTTGATACAAACAG----AGGAATTCTTAAATTTGTAGTAACTTA-T--GACAAT-----CTTCACATTATCTGAAGATATAAGTACATGTAATATTAGG-TCGACCATGTAATC-TATTTT-CTTTAATTC-ATCTTTGGA-TGTCCATTTTG-TGCATCAACAATT--AGCAGTAACA-CA-CTTTTATAATCTATTGAATAATTCAACACT-C------------------CA---ATTTCA-GAAAAGGAA--TTTTCGT---CATTGCAAAGATGAATA
gi|12 : AGCGAATT-ACAAAAGA-CCAGTA-GAGTTTT-CAA-TTGCC-----TGTT------TGA-TTGATCAA-TAGACT---TTACAAT-TT----GG---TCAGCAAAGATTCACAATTGGTCTG-A--------ATT-TCGGTCA-CA-GAGTT-ACTC-AAG-T--ATGACCATGAAGTGACAACTTTTTTT-CC-------T---C---A-----TGTGTGTG------TG-----------------AAT-----C-AG-TTTG-CTT-A-----------CGTG-CAATACATTATTT-CTATGAGTCAGCAA-TCAGT--CGAG-TG-A----
gi|13 : cAGCGAATT-ACAAAAGA-CCGGTA-GAGTTTT-CAA-TTGCC-----TGCT------ACA-TTGATCAA-TAGACT---TTACAAT-TT----GG---TCAGCAAAGATTCACATTTGGTCTG-A--------ATT-TAGGTCA-CA-TAGTT-ACTC-AGG-T--ATGACAATGAAGTGACTACCTTTTCT-CCA-G-TG-T---G---G------GTGTTTA------TG-----ACTGTTA-----AAT-----C-A--------------------------------------TTT-CTAAGATTCAG--A-TTAGT--C-AT-TA-A----TCAGGGCATaggca
gi|14 : cAGCGAATT-ACAAAAGA-CCGGTA-GAGTTTT-CAA-TTGCC-----TGCTAGTGCTAGA-TTGATCAA-TAGACT---TTACAAT-TT----GG---TCAGCAAAGATTCACATTTGGTCTG-A--------ATT-TAGGTCA-CA-GAGTT-ACTC-AGG-T--ATGACAATGAAGTGACCAACTTTTCC-CC--G-TG-TG--G---G-----TGTGTTCA------TG-----ATTATT------
gi|15 : CATG-AAGAATTTC-AAAGAAAAAAA----ACAA-CAACCTCTAGAA-----ACTATGCTCACATAC-TGAACGA-AACTACCAGGAAAG-CTTAAGGAATTAAGA--ACTGAATACAACT-CAG-TTTAGCCTGTGGAAAGCAAT--TACTGC-TGATCAACTTCTGT------TCAA-GATTCAGA-C---ACATG-TGAAT-CTTA
gi|16 : AATAATTTCTTTCTTT-G-CTTCTTCAAAAATTTC-TTTTCCATTTTTAAAATATCGTTCCAGTTCATTATTTTTTAATGGTT-----A-TAAGCTGAAT-GGCATTGTAAAATTCACAAAAGAATACACTGCTCGGTAGATTTG-------TA-TAAAC--AAGACCAAAAGC-TATGAAT-A
gi|17 : GAAT--ACAAAAGA-CCGGTA-GAGTTTT-CAA-TTGCTGCTAGTGCT------AGA-TTGATCAA-TAGACTACATTCCCAC-TTCTCAGG---TCCGC--AGATTCACATTTGGTCTGCA--------CTC-TAGGTCA-CA-AGATT-ACTC-AG
gi|18 : CATTAAC--AATAG-AAAGGG--GT----------G--TT-TATGAAT-AAG-ATT-GACAAACAGGTGAATGGTAC-A-T--TGGTCAGTTTAA--GATT--CTTAAG-AAAAATTGGTGGAG-AGTT--GA--GCT-AGAAATTTGCT------AA-ATGTT
gi|19 : CGAATT-ACAAAAGA-CCGGTA-GAGTTTT-CAT-TTGCC-----TGCT------AGA-TTGATCAA-TAGACT---TTACAAT-TT----GG---TCAGCAAAGATTCACTTTTGGTCTG-A--------ATT-TAGGTCA-CA-GAGTT-ACTC-A
gi|2 : AGCGAATT-ACATAAGA-CCGGTA-GAGTTTT-CAA-TTGCC-----TGCT------AGA-TTGA-AAA-TAGACT---TTACAAT-TT----GG---TCAGCAAAGATTCACATTTGGTCTG-A--------ATT-TAGGTCA-CA-GAGTT-ACTC-AGG-T--ATGACAATGAAGTGACTACCTTTTCC-CCA-G-TG-T---G---G-----TGTGTTTA------TG-----ATTATC------AAT-----C-AT-TTTG-TTTCA--A--TG--T-CGTG-T-TTACA-TATTT-CTATGATTCAA--A-TTAGT--C-AG-TA-A----TCAGGGCATTA--ATTAAT--T---AAAAAAGAATTA-----AA-----T--CG---GCT-GTCA--AGGTATTGTA-GTAAAGGAATGTTTGCACGTACAT-GT-ATA---T-CTTAAATGATTTTTTTAT--TGCATTT-C-AGTATTTCAAAAAATATAATGCTT----GTAC-----------AA-CTTTCAGATGTGCTTTC-------------------------AGATTTT--ATCACAGAA-T--------------TTTTAGTTTTCATTCT-TTAATTTG----AAAGGGGGGT--GG--GGGTGACTTTAAT-TTTTG-CCTCTGAAACTACTATTTTCATGTGCTGAAATT-T-GATT-ATATTATTATGATTAA-TTA--AATTGAATAGGTA-TACTTCTTTTGGGTA----AAATGGAAAG---AAACCGT-TCTTT--CGATGAAGATTATGC-GACTGCAAATATCCATCGTGTAATAATC-TTGGAACAAACAG----GG---TTTCTGAAT-------AACTTA-T-TGGCAAT-----CTTCAAATTGTCTGAAGATATA----CACGAAACATTAGG-TCGACCCAGTATTT-T-TTTT-CTATAATTCAATATTT--A-TGTCCATCTTG-TC------CCACT--GGCAATA--A-CG-TT----TGATTTGCTG-ACAATACAACACT-C-A-G--TTTTCCCGATTACA-GT-TATCA-G-AAAGGAA--TTTCC-T---CATTGTAAAGGTCAATAATTTCTGTTTTT-G-TTTCTTCAAAAATTTCCTTTTCCATTTCTAAAATATCTCCCCAACT-----------------T-----A-TAAACTGAAT-GG---TGTAAATTTAACGAAGAAATACACTGCTGGGAAGATAAG-------TATTGACC--AAGCCCAAAAACATATAAAT-ACTGAAAGGC--TTGCCTAGA-AT---AGCATGAATTCTATT--GGTC--A--AGCATTAAC--AATAG--AAGGG--GT----------G--TT-TATGAAT-A-G-ATT-GACAAACAGGTGAATGGTAC-AGTG-TGGTCAGTTTAA--GAGT-TCTTAAGAAAAAATTGGT-G-G-AGTT--GA--GCT-AGAAATTTGCT-------A-ATGTTTCCA----ACAT--AAGGATTTC-ACAAG---AAA----ACAA-CAACC-CTGAAATGT--ATAATGCT-AC---C-TGAAGAACAACTA-CAGGAAAGACTT--GGA--TAAGAC-ACTGAAATCAACT-CAGATTTA--CTGT-GAAAGCAATATTA-TGCTTGAGTAAC-TCTGTGG---ACCTA-AATTCAGACC---AAATG-TGAAT-CTTAGCTGAC-CAAATT-CTAAAG-TCTATTG-ATCAATCCAGTAGG-CAATTG-AAACTCT-A-CGGTC----TTTGTATTTC
gi|20 : TTTTATT--GAAC--ATTGACAT-AAC--AATAG-A---GG--GTAATACTCTTTG--TTATATTAAT-A-G-ATT-GCCAAACAGATGAATGGTAC-A-TG-TGGTCAATTTAA--GATT-TCTTAAGA
gi|21 : AGTGAATT-ACAAAAGA-CCGGTA-GAGTTTT-CAA-TTACC-----TGCT------AGA-TTGATCAATTAGACT---TTACAAT-TT----GG---TCAGCAAAGATTCACATTTGGTCT--A--------ATT-
gi|22 : GATTATGCTGACTGCAAAT-TCCATCGTGTACTAATCTTTGGAACAAACGG----GG---TTTCTGAAT-------AACTTA---TGGCAAT-----CTTCaaa
gi|23 : GCGAATT-ACAAAAGA-CCGGTA-GAGTTTT-CAA-TTGCC-----TGCT------AGA-CTGTTCAA-TAGACT---TTACAAT-TT----GG---
gi|24 : GCGAATT-ACAAAAGA-CCGGCT-GAGTTTT-CAA-TTGAC-----TTCT------GGA-TAGATCAA-AAGAC
gi|25 : AGATTTA-CCTGTGGAAAGCAATA-TA-TGCTTGGGTAAC-TCc
gi|3 : TCTTTTGGGTT----AAATGGAAAG---AAACTAT-T-------------GATTATGTAGATTACAAAT-TCCATC-----------TTTGGAACAAACAG----GG---TTTCTGAAT-------AACTTA-A-TGGCAATTTAATCTTTAAATTGTCTGAAAATATA----CACGAAACATTAGG-TCGACCAAATATTT-TATTTT-----------------------TCCATC--------------------GCAATAACA-CA-TT----AAATTTGCTGAACAATACAAAACT-CCA-G--TTTTCCCGATTACATGTATTTCA-GGAAAGGAA--TTTCCCT---CATTGTAAAGGTCAATAATTTCTTTCTTT-G-TTTCTTCGAAAATTTC-TTTTCCATTTCTAAAATATCTCCCTAACT-----------------TTTATTA-TAAGCTGAATAGG---TATAAAATTAACGAAGAAATACACTGCTGGGAAGATAAG-------TATTGACC--AAGCCCCAAAAC-TATAAAT-ACTGAAAGGC--TTGCCTAGA-AT---AGCATGAATTCTATT--GGTC--A--AGCATTAAC--AATAT-AGGGAG--GT----------G--TT-TATGAAT-A-G-ATT-GACAAACAGGTGAATGGTAC-T-AG-TGATCAGTTTAA--GATT-TCTTAAAAAAAAATTGGTGG-G-AGTT--GA--GTT-AGAAATTTGCT------AA-ATGTTTCCA----ACATG-AAGGATTTC-ACAAGAAAAAA----ACAA-CAACC-CTGAAATGT--ATAATTCT-AC---C-TGAAGAA-AACCA-CAGGAAAGAGTT--GCA--TAAGAC-ACTGAAATCAACT-CAGATTTA-CCTGTGGAAAGCAATA-TA-TGCTTGAGTAAC-TCTGT-G---ACCTA-AATTCAGACC---AAATG-TGAAT-CTTAGCTGAC-CAAATT-CTAAAG-TCTATTG-ATCAATCCAGTAGG-CAATTGAAAACTCT-A-CAGTC---TTTTGTAATTC
gi|4 : TTATTGTA-GTATAGGAATGTTTGCATGTA-G--G--------A-CCTACATG--------------------T-AGTATTTG-AAAAATATAATGCATACATGTACTACTGTAC---AACCTTTCAGATGTGCTTTCACTTATACTTACCAT---GCA----AGATTTT--ATCACGGAA-CGGTGT--A-GAAATTTTTAGTTTTCTTTCT-TTAATTTG----AAAGGGGGTTAAGG--GGTTGAGTTTAATCTTTTG-CCTCTG-TACTACTATTTTCATGTGCTGAAA---TTGATT-ATATTA-TATGAT--AATTA--AATTG-ATAGGTG-TACTTCTTTTGGGTATTTAAAATGGAAAG---AACCCAT-TCTTTTCTGATGGAGATTATGCTGATTGCAAAT-TCCATCATGTAATAATCTTTGGAACAAACAGCTAGGG---TTTCTGAAT-------AACTTAATATGACAAT-----CTTCAAATTGTCTGAAGATATA----CACGAAACATTAGT-TCGACCAAGTATTT-TATTTTTCCATAATTC-ATATTTGGA-TGTCCATCTTG-T-------CCACT--GACAATAACA-TG-TT----TAATTTGCTGAACAATACAACACTCC-A-A--TTTTCCCGATTACATGTATTTCAGG-AAAGGAA--TTTCC-TTCATATTGTAAAGGTCAATAATTgctg
gi|5 : CC-----TGCT------TGA-TTGATCA--TAGGCT---ATAGAAT-TT----GG---TCAG----------------------A--------ATG-TAGATCG-CA-GAGT---------G-T--ATGACAATGAGGTGATAACCTTTTCC-CCG-G-TG-T---GTGCG-----TGTGTTTA------TG-----ATTATC------AATTGAATC-GT-TGTG-TTTAATTA--T---T-CTTG-T-TTGCA--ATTT-TGATTGTTC------TTGCTTGC-AT-TA------TGAAGGCACAA--TTTAAT--TTA-GAAAAGGAATTATTTCTAACTTGCT--TGATTGCA-GTCA--GGCTACAGTA-GTATAGGTATGTATACATGCATA--ATTATTGTGA-TTTTAATGATTTTT---CTCCGCATTTTC-AGTATTTT-GAAAATATAATACAT----GCACTATCATGC---AACCGTTCAGATGTGCAATCACA---------CATTAAGCAAGATAGATTTT--ATTACCGAA-CGGTGC--ATTAA--TTTTAGTTTTCATTCT-TCATTTAGCGGAAAAGGGGGGT--GGGTGGGTAA---TAA---TTTG-CTTTTG-CGCTTCTATTTTCATGTGTTGAA---------T-ATA-----ATAAT--------------------TA-TACTTCTTTTGTGTT----AAGTGAAAAG---AAACCAT-TCTCT
gi|6 : aCATTAGG-TTGACCAAGTATTTATTTTTT-CCATAATTC-ATATTTGGA-TGTCCATCTTG-----------AATGGGGGAATAAC--CGTTT----TGA--TGCTG-GCAATACAA-ACT-C-C-GTTTTTTCCCGATT-C-TGTATTTAG-G-AAAGGAATGTTCCC-T---CATTGTAAAGGT-AATAA-TTATGTTTTT-GTTTTCTTCAAAAATTTCT---------------ATA-CTCC---ACT-----------------T-----A-TAAGCTGAATAGG---TGT-AAATTCATGA--AAAT--ACTGCT-GGAAAATAGA-------TATGGAAC--CAG-CCAAAAAC-TATAAAT-ACT-AAAGCG--TTGC---AA-AT---AGCATGAAT--CATTAGGGT------AGCCTTAAA--CAT-G-AAAGCGACGT----------GTCTT-TATCAGTCA-G-ATTCCACAAACAGATGAAT-GTACAA-TGATGGTCAGTTTAGATGATTGTCTGCAG-ACAAATTGGTTC-G-AG-T--GACGGTC-AAAAA-TTGCT------AATGCGTTTCCA----ACAT
gi|7 : CGAATT-ACAAACGATCCGGTACGAATTCT-CAAATTGCC-----TGCT------AT--TTAATCAAATA---T---TCA-AATACT----AGACCTTAATACTGATTCACATT-GGTCTG-A--------ATTGTAG-TCAACA--AGTTGACTCCAGGCT--ATGACAATCGAGGGACTACCTTTTCC-CCA-G-TG-T---G---GC----TGTGTTTA------TG-----ATTATTTTTTAAAAT-----C-AT-TTTG-TTTCA--A--TGTTT-CGTG-T-TTACA-TATT---CATG-TTCAG--A-TTA-T--C-TG-TA-A----TCA-GGCATTATGCTTAAT--TT---AAAAAGAATTA-----AA-----T---G---ACC-GTCA--GG-TATTGTA-G-ATAGGAATGTTTc
gi|8 : GAAT--ACAAAAGA-CCGGTA-GAGTTTT-CAA-TTGCTGCTAGTGCT------AGA-TTGATCAA-TAGACTACATTCCCAC-TTCTCAGG---TCCGC--AGATTCACATTTGGTCTGCA--------CTC-TAGGTCA-CA-AGATT-ACTC-AGG-TGCATGCGCCTGCACT-ACTACCTTGCCCTCCT-GCTG-TCAAG---GTCGACTGCCTCTA------TGGATCTATTGTTTA----AAC-----CTATCTTTGCTTTCAC-A--TGT-T-CGTGAT-TTAC---ATTT-CTATGATTCAG--ATTTAGT--C-CGCTACATTCCTCAGGACATTA----TAAT--TTAGAAAAAAGAATTA-----AA-----TGACC---GCA-GTCA--GGTCATTGTA-Gagcctgtttaccgcgtatgcacattaatg
gi|9 : AGCGAATT-ACAAAAAA-TCGGTA-GAATTTT-CAA-TTGGC-----TGCT------GGA-TTGATCAA-T----------------TT----GG---TCCGCCAAGTATAACATTTGGTCTG-ACCGTCTGAATG-GAGGTCA-CA-TTGTT-AATT-AGG-T--ATGACAATGAAGTGACAACCTTTT-T-TCA-C-TG-T---GC--G-----AGTGCATG------TG------------------------------TTTG-TTTGA--AATTC--T-CTTA-T-TTATATTATAT-CTAGCATTCAG--A-TTAAT--T-AG-CA-A----TCAGAGCA-TA--ATCAACAATTA-AAAAA
Alignments
lowQualScore : 1111111111111111111111111
lowQualScore : 11111 111 1111 11111111 11 3333333333333 111111 33333333333333333 1111111111 44444444444 111 111 111111 111 44444444444444444444 11 555555555555555 5555555555555555 22 2222 333333333 1111111111111111111111111 11 1 3333333 1 2222 33333333333333 11 1 11 444444 1 1 3333333333333333 1 11111 111 111 1111 111 2222222 2222 11111 1111 111 1111 3333333333333333 1111 222222 11111 111 11111 111111111111111 66666666666666666666666 1 111 2222222 11 11 1 111 11 11111 3333333333333 111111 1 111111 1111 1111 11 111 11 11 22222 111 1 1 1 1 1 1 111 2222
lowQualScore : 3 6 3 3 3 44444 888888 2 5 000 3 3333 555 3 6 22222222 3 3 55 3 3 4 66 1 4 00 4 4 2222222222222 222222 00000000000000000 4444444444 5 5 00000000000 000 333 5 66 5 1 66 5 5 777777 0 666 99 99 66666666666666666666 99 11 5 6 0 6 444444444444444 3 1111111111111111 00 4 1111 2 000000000 2 5555555555555555555555555 33 4 0 2 0 4444444 0 1111 3 2 22222222222222 33 0 11 3 111111 0 3 0 5555555555555555 0 88888 444 8 666 0 6 8 3 3 0 4444 111 1111111 4444 66666 7777 3 6 333 6666 6 2 6 9999999999999999 1 6 6 4444 7 2 6 222222 7 99999 888 99 66666 2 8 8 0 888888888888888 0 77777777777777777777777 8 0 444 0 0 0 0 5 6666666 0 1 11 5 8 8 2 33 2 0 777 11 11 77777 99 777 99 5555555555555 6 6 6 6 6 111111 99 6 5 2 6 6 99 99 6 999999 6 7777 8 8 0 7777 8 8 11 1 8 444 8 3 8 8 0 11 11 8 0 8 77 88 6 6 22222 8 444 8 8 0 0 0 0 0 5 666 0000 1
lowQualScore : . . . . . ..... ...... . . ... . .... ... . . ........ . . .. . . . .. . . .. . . ............. ...... ................. .......... . . ........... ... ... . .. . . .. . . ...... . ... .. .. .................... .. .. . . . . ............... . ................ .. . .... . ......... . ......................... .. . . . . ....... . .... . . .............. .. . .. . ...... . . . ................ . ..... ... . ... . . . . . . .... ... ....... .... ..... .... . . ... .... . . . ................ . . . .... . . . ...... . ..... ... .. ..... . . . . ............... . ....................... . . ... . . . . . ....... . . .. . . . . .. . . ... .. .. ..... .. ... .. ............. . . . . . ...... .. . . . . . .. .. . ...... . .... . . . .... . . .. . . ... . . . . . .. .. . . . .. .. . . ..... . ... . . . . . . . . ... .... .
lowQualScore : 1 2 1 1 1 33333 222222 9 7 888 1 1111 444 2 7 11111111 3 6 66 6 6 4 11 3 4 99 4 4 3333333333333 888888 88888888888888888 6666666666 0 6 44444444444 999 222 0 99 0 4 99 0 0 888888 1 777 22 88 00000000000000000000 00 00 7 7 8 0 888888888888888 2 0000000000000000 88 2 2222 5 888888888 5 0000000000000000000000000 88 2 0 5 8 0000000 0 2222 2 5 55555555555555 22 0 00 2 555555 0 2 0 2222222222222222 0 44444 000 0 000 2 0 0 2 8 7 2222 777 7777777 2222 77777 0000 2 7 333 2222 7 5 7 2222222222222222 0 7 7 2222 3 5 7 555555 2 22222 333 22 00000 5 0 0 8 666666666666666 8 00000000000000000000000 0 6 000 8 6 8 8 0 0000000 8 0 00 0 0 0 5 88 5 0 555 66 00 88888 22 555 22 0000000000000 7 7 7 7 7 555555 22 7 5 5 7 7 22 22 7 222222 7 0000 0 0 8 0000 0 0 00 0 0 000 0 8 0 0 8 00 00 0 8 0 77 33 7 7 00000 0 000 0 0 0 0 0 0 0 5 000 8888 0
consensus : AGCGAATT-ACAAAAGA-CCGGTA-GAGTTTT-CAA-TTGCC-----TGCT------AGA-TTGATCAA-TAGACT---TTACAAT-TT----GG---TCAGCAAAGATTCACATTTGGTCTG-A--------ATT-TAGGTCA-CA-GAGTT-ACTC-AGG-T--ATGACAATGAAGTGACTACCTTTTCC-CCA-G-TG-T---G---G-----TGTGTTTA------TG-----ATTATT------AAT-----C-AT-TTTG-TTTCA--A--TG--T-CGTG-T-TTACA-TATTT-CTATGATTCAG--A-TTAGT--C-AG-TA-A----TCAGGGCATTA--ATTAAT--TTA-AAAAAAGAATTA-----AA-----T--CG---GCA-GTCA--GGTTATTGTA-GTATAGGAATGTTTGCACGTACA--GT-ATT---A-CTTAAATGATTTTT---T--CGCATTT-C-AGTATTTT-AAAAATATAATGCGT----GTACTACCG-TA--CAACCTTTCAGATGTGCTTTCAC----------CAT---GCA----AGATTTT--ATCACGGAA-CGGTGTA--GAA--TTTTAGTTTTCATTCT-TTAATTTG----AAAGGGGGGT--GG--GGGTGA-TTTAAT-TTTTG-CCTCTG-NACTACTATTTTCATGTGCTGAAA---T-GATT-ATATTA-TATGAT--A-TTA--AATTG-ATAGGTA-TACTTCTTTTGGGTA----AAATGGAAAG---AAACCAT-TCTTTTCCGATGGAGATTATGCTGACTGCAAAT-TCCATCGTGTANTAATCTTTGGAACAAACGG----GG---TTTCTGAAT-------AACTTA-T-TGGCAAT-----CTTCAAATTGTCTGAAGATATA----CACGAAACATTAGG-TCGACCAAGTATTT-TATTTT-CCATAATTC-ATATTTGGA-TGTCCATCTTG-T-------CCACT--GGCAATAACA-CG-TT----TGATTTGCTGAACAATACAACACT-C-A-G--TTTTCCCGATTACATGTATTTCA-G-AAAGGAA--TTTCC-T---CATTGTAAAGGTCAATAATTTCTGTTTTT-G-TTTCTTCAAAAATTTCCTTTTCCATTTCTAAAATATCTCCCCAACT-----------------T-----A-TAAGCTGAATAGG---TGTAAAATTAACGAAGAAATACACTGCTGGGAAGATAAG-------TATTGANC--AAGCCCAAAAAC-TATAAAT-ACTGAAAGGC--TTGCCTAGA-AT---AGCATGAATTCTATT--GGTC--A--AGCATTAAC--AATAG-AAAGGG--GT----------G--TT-TATGAAT-A-G-ATT-GACAAACAGGTGAATGGTAC-A-TG-TGGTCAGTTTAA--GATT-TCTTAAGAAAAAATTGGTGG-G-AGTT--GA--GCT-AGAAATTTGCT------AA-ATGTTTCCA----ACATG-AAGGATTTC-ACAAGAAAAAA----ACAA-CAACC-CTGAAATGT--ATAATGCT-AC---C-TGAAGAA-AACTA-CAGGAAAGACTT--GCA--TAAGAC-ACTGAAATCAACT-CAGATTTA-CCTGTGGAAAGCAATA-TA-TGCTTGAGTAAC-TCTGT-G---ACCTA-AATTCAGACC---AAATG-TGAAT-CTTAGCTGAC-CAAATT-CTAAAG-TCTATTG-ATCAATCCAGCAGG-CAATTGAAAACTCT-ACCGGTC---TTTTGTANTTC
Reference ( family-866 ) : AGCGAATT-ACAAAAGA-CCGGTA-GAGTTTT-CAA-TTGCC-----TGCT------AGA-TTGATCAA-TAGACT---TTACAAT-TT----GG---TCAGCAAAGATTCACATTTGGTCTG-A--------ATT-TAGGTCA-CA-GAGTT-ACTC-AGG-T--ATGACAATGAAGTGACTACCTTTTCC-CCA-G-TG-T---G---G-----TGTGTTTA------TG-----ATTATT------AAT-----C-AT-TTTG-TTTCA--A--TG--T-CGTG-T-TTACA-TATTT-CTATGATTCAG--A-TTAGT--C-AG-TA-A----TCAGGGCATTA--ATTAAT--TTA-AAAAAAGAATTA-----AA-----T--CG---GCA-GTCA--GGTTATTGTA-GTATAGGAATGTTTGCACGTACA--GT-ATT---A-CTTAAATGATTTTT---T--CGCATTT-C-AGTATTTT-AAAAATATAATGCGT----GTACTACCG-TN--CAACCTTTCAGATGTGCTTTCAC----------CAT---GCA----AGATTTT--ATCACGGAA-CGGTGTA--GAA--TTTTAGTTTTCATTCT-TTAATTTG----AAAGGGGGGT--GG--GGGTGA-TTTAAT-TTTTG-CCTCTG-NACTACTATTTTCATGTGCTGAAA---T-GATT-ATATTA-TATGAT--A-TTA--AATTG-ATAGGTA-TACTTCTTTTGGGTA----AAATGGAAAG---AAACCAT-TCTTTTCCGATGGAGATTATGCTGACTGCAAAT-TCCATCGTGTANTAATCTTTGGAACAAACGG----GG---TTTCTGAAT-------AACTTA-T-TGGCAAT-----CTTCAAATTGTCTGAAGATATA----CACGAAACATTAGG-TCGACCAAGTATTT-TATTTT-CCATAATTC-ATATTTGGA-TGTCCATCTTG-T-------CCACT--GGCAATAACA-CG-TT----TGATTTGCTGAACAATACAACACT-C-A-G--TTTTCCCGATTACATGTATTTCA-G-AAAGGAA--TTTCC-T---CATTGTAAAGGTCAATAATTTCTGTTTTT-G-TTTCTTCAAAAATTTCCTTTTCCATTTCTAAAATATCTCCCCAACT-----------------T-----A-TAAGCTGAATAGG---TGTAAAATTAACGAAGAAATACACTGCTGGGAAGATAAG-------TATTGANC--AAGCCCAAAAAC-TATAAAT-ACTGAAAGGC--TTGCCTAGA-AT---AGCATGAATTCTATT--GGTC--A--AGCATTAAC--AATAG-AAAGGG--GT----------G--TT-TATGAAT-A-G-ATT-GACAAACAGGTGAATGGTAC-A-TG-TGGTCAGTTTAA--GATT-TCTTAAGAAAAAATTGGTGG-G-AGTT--GA--GCT-AGAAATTTGCT------AA-ATGTTTCCA----ACATG-AAGGATTTC-ACAAGAAAAAA----ACAA-CAACC-CTGAAATGT--ATAATGCT-AC---C-TGAAGAA-AACTA-CAGGAAAGACTT--GCA--TAAGAC-ACTGAAATCAACT-CAGATTTA-CCTGTGGAAAGCAATA-TA-TGCTTGAGTAAC-TCTGT-G---ACCTA-AATTCAGACC---AAATG-TGAAT-CTTAGCTGAC-CAAATT-CTAAAG-TCTATTG-ATCAATCCAGCAGG-CAATTGAAAACTCT-ACCGGTC---TTTTGTANTTC
gi|1 : AGCGAATTGACATAAGAACCGGTA-GAGTTTTTCAA-TTGCC-----TGCT------AGAATTGATCAA-TAGACT---TTACA-T-TT----GG---TCAGCAAAGATTCACATTTGGTCTG-A--------ATT-TAGGTCA-CATGAGTT-ACTC-AGG-T--ATGACAATGAAGTAACT-CCTTTTCC-CCATG-TGGT---G---GGTG--TGTGTTTACTAGTATG-----ATTATTC-----AAT-----C-AT-TTTG-TTTCAT-A--TG--TTCGTGAT-TTACA-TATTCACTATGATTCAA--A-TTAGT--C-AG-TA-AA---TCAGGGCATTA--ATTAAA--TTA-AAAGAA----TA-----AA--------CG---GCAAGTCAAAGGTTATTGTACGTA-AAGAATGTTTGCACGTACAATGT-ATT---AACTTAAATGATTTTT---TAATGCTTTT-CCAGTATTTTCAAAAATATAATGCGT----GTACTGCTGGTAAACAACCTTTCAGATGTGCTTTC------------CA------A----AGATTTCTAATCACAGAAACGGTGTAAGGAA--TTTTAGTTTTCATTCTATTAATTTG----AC---------------------TTTAAT-TTTTGGCCTCTG-AACTACTATTTTCATGTGC-GAAAAATT-GATTTATATTA-TATGAT--A-TTATAAATTG--TAGGTAATACTTCTTTTGGGTA----AAATGGAAAAGAAAAACCATATCTTTTCTGATGGAGATTATGCTGACTGCAAAT-TCCATCGTGTACTAATCTTTGGAACAAACGG----GG---TTTCTGAAT-------AACTTA-T--GGCAAT-----CTCAAAATTGTCTGAAGATATA----CA-GAAACATTAGGATCGACCAAGTATTT--------------------ATTTGGAATGTCCATCTTGGT-------CCACT--G-CAA-AACAACG-TT----TGATTTGCTGAACA-TACAACACC-C-AAG--TTTTCCTGATTCC--------CA------------------T---CATTGTAAAGGTCAATAATTTCTGTTTTTTG-TTTCTTCAAAA--TTTCTTT-----------AATATCTCCCCAACT-----------------T-----ACTAAACTGAATAGG---TGTAAAATTAACGAAGAAATACACTGCTGGGAAGATAAGTAGGCCATATTGAGCCGAAGCCCGAAAAA-TATAAATAACTGAAAGGCATTTGCCTAGACATATAAGCAATAA-TCTATG--GGTCCAA--GGCATTAACTAAATAGAAAAGGG--GT----------GT-TT-TATGAAT-A-GAATT-GAC-AACAGGTGAATGGTAC-G-TG-TGGTCAGTTTTA--CACT-TCTTAAG-AAAAATTGAAGG-GAAGTTGAGA--GCTAAGAAATTTGCT------AA-ATGTTTCCA----ACATGAAAGGATTTCAACAAGAAAAAA----ACAATCAA-C-CTGAAATGTAAATAATGAT-AC---CGTGAAG---------------AGACTT--GCA--TAAGACAACTG-AATCAACTGCAGATTTA-CCTGTGGAAAGCAATG-TA-TGCTTGAGTAAC-TCTGT-GGACACATAGAATTCAGACCAAAAAATGTTGAATACTTAGCTGACGCAAATTACTAAAATTCTATTGAATCAATCCGTCAGGACAATTG-AAACTCTAACCGGTCTTATTTTGTATTTC
gi|10 : ATTGGTGG-G-AATT--GA--GCT-AGAAGTTTGTTTTAATGAA-ATGTAT-CATGTTACCTG-AAGAAAACT-ACAGGAAAGAGTTGCACAA--GACA-CTGAAATgct
gi|10 : TGAAATGT--ATCATGTT-AC---C-TGAAGAA-AACTA-CAGGAAAGAGTT--GCA--CAAGAC-ACTGAAATCAACT-CAGATTTA-TCTGTGGAAAGCAATA-TA-TGCTCGAGTAAC-TCTGT-G---ACCTA-AATTCAGACC---AAATG-TGAAT-CTTGGCTCAC-CAAATT-GTAAAG-TCTATTG-ATCAATCCAGCAGG-TAATTGAAAACTCT-ACCAGTC---TTTTATAATTcaactcagatttatctgtggaaagcaatatatgctcgagtaactctgtgacctaaattcagaccaaatgtgaatcttggctcaccaaattgtaaagtctattgatcaatccagcaggtaattgaaaactctaccagtcttttataatt
gi|11 : attggtgggaattgagctagaagtttgttttaaTCTTTGATACAAACAG----AGGAATTCTTAAATTTGTAGTAACTTA-T--GACAAT-----CTTCACATTATCTGAAGATATAAGTACATGTAATATTAGG-TCGACCATGTAATC-TATTTT-CTTTAATTC-ATCTTTGGA-TGTCCATTTTG-TGCATCAACAATT--AGCAGTAACA-CA-CTTTTATAATCTATTGAATAATTCAACACT-C------------------CA---ATTTCA-GAAAAGGAA--TTTTCGT---CATTGCAAAGATGAATA
gi|12 : AGCGAATT-ACAAAAGA-CCAGTA-GAGTTTT-CAA-TTGCC-----TGTT------TGA-TTGATCAA-TAGACT---TTACAAT-TT----GG---TCAGCAAAGATTCACAATTGGTCTG-A--------ATT-TCGGTCA-CA-GAGTT-ACTC-AAG-T--ATGACCATGAAGTGACAACTTTTTTT-CC-------T---C---A-----TGTGTGTG------TG-----------------AAT-----C-AG-TTTG-CTT-A-----------CGTG-CAATACATTATTT-CTATGAGTCAGCAA-TCAGT--CGAG-TG-A----
gi|13 : cAGCGAATT-ACAAAAGA-CCGGTA-GAGTTTT-CAA-TTGCC-----TGCT------ACA-TTGATCAA-TAGACT---TTACAAT-TT----GG---TCAGCAAAGATTCACATTTGGTCTG-A--------ATT-TAGGTCA-CA-TAGTT-ACTC-AGG-T--ATGACAATGAAGTGACTACCTTTTCT-CCA-G-TG-T---G---G------GTGTTTA------TG-----ACTGTTA-----AAT-----C-A--------------------------------------TTT-CTAAGATTCAG--A-TTAGT--C-AT-TA-A----TCAGGGCATaggca
gi|14 : cAGCGAATT-ACAAAAGA-CCGGTA-GAGTTTT-CAA-TTGCC-----TGCTAGTGCTAGA-TTGATCAA-TAGACT---TTACAAT-TT----GG---TCAGCAAAGATTCACATTTGGTCTG-A--------ATT-TAGGTCA-CA-GAGTT-ACTC-AGG-T--ATGACAATGAAGTGACCAACTTTTCC-CC--G-TG-TG--G---G-----TGTGTTCA------TG-----ATTATT------
gi|15 : CATG-AAGAATTTC-AAAGAAAAAAA----ACAA-CAACCTCTAGAA-----ACTATGCTCACATAC-TGAACGA-AACTACCAGGAAAG-CTTAAGGAATTAAGA--ACTGAATACAACT-CAG-TTTAGCCTGTGGAAAGCAAT--TACTGC-TGATCAACTTCTGT------TCAA-GATTCAGA-C---ACATG-TGAAT-CTTA
gi|16 : AATAATTTCTTTCTTT-G-CTTCTTCAAAAATTTC-TTTTCCATTTTTAAAATATCGTTCCAGTTCATTATTTTTTAATGGTT-----A-TAAGCTGAAT-GGCATTGTAAAATTCACAAAAGAATACACTGCTCGGTAGATTTG-------TA-TAAAC--AAGACCAAAAGC-TATGAAT-A
gi|17 : GAAT--ACAAAAGA-CCGGTA-GAGTTTT-CAA-TTGCTGCTAGTGCT------AGA-TTGATCAA-TAGACTACATTCCCAC-TTCTCAGG---TCCGC--AGATTCACATTTGGTCTGCA--------CTC-TAGGTCA-CA-AGATT-ACTC-AG
gi|18 : CATTAAC--AATAG-AAAGGG--GT----------G--TT-TATGAAT-AAG-ATT-GACAAACAGGTGAATGGTAC-A-T--TGGTCAGTTTAA--GATT--CTTAAG-AAAAATTGGTGGAG-AGTT--GA--GCT-AGAAATTTGCT------AA-ATGTT
gi|19 : CGAATT-ACAAAAGA-CCGGTA-GAGTTTT-CAT-TTGCC-----TGCT------AGA-TTGATCAA-TAGACT---TTACAAT-TT----GG---TCAGCAAAGATTCACTTTTGGTCTG-A--------ATT-TAGGTCA-CA-GAGTT-ACTC-A
gi|2 : AGCGAATT-ACATAAGA-CCGGTA-GAGTTTT-CAA-TTGCC-----TGCT------AGA-TTGA-AAA-TAGACT---TTACAAT-TT----GG---TCAGCAAAGATTCACATTTGGTCTG-A--------ATT-TAGGTCA-CA-GAGTT-ACTC-AGG-T--ATGACAATGAAGTGACTACCTTTTCC-CCA-G-TG-T---G---G-----TGTGTTTA------TG-----ATTATC------AAT-----C-AT-TTTG-TTTCA--A--TG--T-CGTG-T-TTACA-TATTT-CTATGATTCAA--A-TTAGT--C-AG-TA-A----TCAGGGCATTA--ATTAAT--T---AAAAAAGAATTA-----AA-----T--CG---GCT-GTCA--AGGTATTGTA-GTAAAGGAATGTTTGCACGTACAT-GT-ATA---T-CTTAAATGATTTTTTTAT--TGCATTT-C-AGTATTTCAAAAAATATAATGCTT----GTA-----------CAA-CTTTCAGATGTGCTTTC-------------------------AGATTTT--ATCACAGAA-T-------------TTTTAGTTTTCATTCT-TTAATTTG----AAAGGGGGGT--GG--GGGTGACTTTAAT-TTTTG-CCTCTGAAACTACTATTTTCATGTGCTGAAATT-T-GATT-ATATTATTATGATTAA-TTA--AATTGAATAGGTA-TACTTCTTTTGGGTA----AAATGGAAAG---AAACCGT-TCTTT--CGATGAAGATTATGC-GACTGCAAATATCCATCGTGTAATAATC-TTGGAACAAACAG----GG---TTTCTGAAT-------AACTTA-T-TGGCAAT-----CTTCAAATTGTCTGAAGATATA----CACGAAACATTAGG-TCGACCCAGTATTT-T-TTTT-CTATAATTCAATATTT--A-TGTCCATCTTG-TC------CCACT--GGCAATA--A-CG-TT----TGATTTGCTG-ACAATACAACACT-C-A-G--TTTTCCCGATTACA-GT-TATCA-G-AAAGGAA--TTTCC-T---CATTGTAAAGGTCAATAATTTCTGTTTTT-G-TTTCTTCAAAAATTTCCTTTTCCATTTCTAAAATATCTCCCCAACT-----------------T-----A-TAAACTGAAT-GG---TGTAAATTTAACGAAGAAATACACTGCTGGGAAGATAAG-------TATTGACC--AAGCCCAAAAACATATAAAT-ACTGAAAGGC--TTGCCTAGA-AT---AGCATGAATTCTATT--GGTC--A--AGCATTAAC--AATAG--AAGGG--GT----------G--TT-TATGAAT-A-G-ATT-GACAAACAGGTGAATGGTAC-AGTG-TGGTCAGTTTAA--GAGT-TCTTAAGAAAAAATTGGT-G-G-AGTT--GA--GCT-AGAAATTTGCT-------A-ATGTTTCCA----ACAT--AAGGATTTC-ACAAG---AAA----ACAA-CAACC-CTGAAATGT--ATAATGCT-AC---C-TGAAGAACAACTA-CAGGAAAGACTT--GGA--TAAGAC-ACTGAAATCAACT-CAGATTTA--CTGT-GAAAGCAATATTA-TGCTTGAGTAAC-TCTGTGG---ACCTA-AATTCAGACC---AAATG-TGAAT-CTTAGCTGAC-CAAATT-CTAAAG-TCTATTG-ATCAATCCAGTAGG-CAATTG-AAACTCT-A-CGGTC----TTTGTATTTC
gi|20 : TTTTATT--GAAC--ATTGACAT-AAC--AATAG-A---GG--GTAATACTCTTTG--TTATATTAAT-A-G-ATT-GCCAAACAGATGAATGGTAC-A-TG-TGGTCAATTTAA--GATT-TCTTAAGA
gi|21 : AGTGAATT-ACAAAAGA-CCGGTA-GAGTTTT-CAA-TTACC-----TGCT------AGA-TTGATCAATTAGACT---TTACAAT-TT----GG---TCAGCAAAGATTCACATTTGGTCT--A--------ATT-
gi|22 : GATTATGCTGACTGCAAAT-TCCATCGTGTACTAATCTTTGGAACAAACGG----GG---TTTCTGAAT-------AACTTA---TGGCAAT-----CTTCaaa
gi|23 : GCGAATT-ACAAAAGA-CCGGTA-GAGTTTT-CAA-TTGCC-----TGCT------AGA-CTGTTCAA-TAGACT---TTACAAT-TT----GG---
gi|24 : GCGAATT-ACAAAAGA-CCGGCT-GAGTTTT-CAA-TTGAC-----TTCT------GGA-TAGATCAA-AAGAC
gi|25 : AGATTTA-CCTGTGGAAAGCAATA-TA-TGCTTGGGTAAC-TCc
gi|3 : TCTTTTGGGTT----AAATGGAAAG---AAACTAT-T-------------GATTATGTAGATTACAAAT-TCCATC-----------TTTGGAACAAACAG----GG---TTTCTGAAT-------AACTTA-A-TGGCAATTTAATCTTTAAATTGTCTGAAAATATA----CACGAAACATTAGG-TCGACCAAATATTT-TATTTT-----------------------TCCATC--------------------GCAATAACA-CA-TT----AAATTTGCTGAACAATACAAAACT-CCA-G--TTTTCCCGATTACATGTATTTCA-GGAAAGGAA--TTTCCCT---CATTGTAAAGGTCAATAATTTCTTTCTTT-G-TTTCTTCGAAAATTTC-TTTTCCATTTCTAAAATATCTCCCTAACT-----------------TTTATTA-TAAGCTGAATAGG---TATAAAATTAACGAAGAAATACACTGCTGGGAAGATAAG-------TATTGACC--AAGCCCCAAAAC-TATAAAT-ACTGAAAGGC--TTGCCTAGA-AT---AGCATGAATTCTATT--GGTC--A--AGCATTAAC--AATAT-AGGGAG--GT----------G--TT-TATGAAT-A-G-ATT-GACAAACAGGTGAATGGTAC-T-AG-TGATCAGTTTAA--GATT-TCTTAAAAAAAAATTGGTGG-G-AGTT--GA--GTT-AGAAATTTGCT------AA-ATGTTTCCA----ACATG-AAGGATTTC-ACAAGAAAAAA----ACAA-CAACC-CTGAAATGT--ATAATTCT-AC---C-TGAAGAA-AACCA-CAGGAAAGAGTT--GCA--TAAGAC-ACTGAAATCAACT-CAGATTTA-CCTGTGGAAAGCAATA-TA-TGCTTGAGTAAC-TCTGT-G---ACCTA-AATTCAGACC---AAATG-TGAAT-CTTAGCTGAC-CAAATT-CTAAAG-TCTATTG-ATCAATCCAGTAGG-CAATTGAAAACTCT-A-CAGTC---TTTTGTAATTC
gi|4 : TTATTGTA-GTATAGGAATGTTTGCATGTA-G--G--------A-CCTACATG--------------------T-AGTATTTG-AAAAATATAATGCATACATGTACTACTG-TA--CAACCTTTCAGATGTGCTTTCACTTATACTTACCAT---GCA----AGATTTT--ATCACGGAA-CGGTGTA--GAAATTTTTAGTTTTCTTTCT-TTAATTTG----AAAGGGGGTTAAGG--GGTTGAGTTTAATCTTTTG-CCTCTG-TACTACTATTTTCATGTGCTGAAA---TTGATT-ATATTA-TATGAT--AATTA--AATTG-ATAGGTG-TACTTCTTTTGGGTATTTAAAATGGAAAG---AACCCAT-TCTTTTCTGATGGAGATTATGCTGATTGCAAAT-TCCATCATGTAATAATCTTTGGAACAAACAGCTAGGG---TTTCTGAAT-------AACTTAATATGACAAT-----CTTCAAATTGTCTGAAGATATA----CACGAAACATTAGT-TCGACCAAGTATTT-TATTTTTCCATAATTC-ATATTTGGA-TGTCCATCTTG-T-------CCACT--GACAATAACA-TG-TT----TAATTTGCTGAACAATACAACACTCC-A-A--TTTTCCCGATTACATGTATTTCAGG-AAAGGAA--TTTCC-TTCATATTGTAAAGGTCAATAATTgctg
gi|5 : CC-----TGCT------TGA-TTGATCA--TAGGCT---ATAGAAT-TT----GG---TCAG----------------------A--------ATG-TAGATCG-CA-GAGT---------G-T--ATGACAATGAGGTGATAACCTTTTCC-CCG-G-TG-T---GTGCG-----TGTGTTTA------TG-----ATTATC------AATTGAATC-GT-TGTG-TTTAATTA--T---T-CTTG-T-TTGCA--ATTT-TGATTGTTC------TTGCTTGC-AT-TA------TGAAGGCACAA--TTTAAT--TTA-GAAAAGGAATTATTTCTAACTTGCT--TGATTGCA-GTCA--GGCTACAGTA-GTATAGGTATGTATACATGCATA--ATTATTGTGA-TTTTAATGATTTTT---CTCCGCATTTTC-AGTATTTT-GAAAATATAATACAT----GCACTATCA-TG--CAACCGTTCAGATGTGCAATCACA---------CATTAAGCAAGATAGATTTT--ATTACCGAA-CGGTGCAT-TAA--TTTTAGTTTTCATTCT-TCATTTAGCGGAAAAGGGGGGT--GGGTGGGTAA---TAA---TTTG-CTTTTG-CGCTTCTATTTTCATGTGTTGAA---------T-ATA-----ATAAT--------------------TA-TACTTCTTTTGTGTT----AAGTGAAAAG---AAACCAT-TCTCT
gi|6 : aCATTAGG-TTGACCAAGTATTTATTTTTT-CCATAATTC-ATATTTGGA-TGTCCATCTTG-----------AATGGGGGAATAAC--CGTTT----TGA--TGCTG-GCAATACAA-ACT-C-C-GTTTTTTCCCGATT-C-TGTATTTAG-G-AAAGGAATGTTCCC-T---CATTGTAAAGGT-AATAA-TTATGTTTTT-GTTTTCTTCAAAAATTTCT---------------ATA-CTCC---ACT-----------------T-----A-TAAGCTGAATAGG---TGT-AAATTCATGA--AAAT--ACTGCT-GGAAAATAGA-------TATGGAAC--CAG-CCAAAAAC-TATAAAT-ACT-AAAGCG--TTGC---AA-AT---AGCATGAAT--CATTAGGGT------AGCCTTAAA--CAT-G-AAAGCGACGT----------GTCTT-TATCAGTCA-G-ATTCCACAAACAGATGAAT-GTACAA-TGATGGTCAGTTTAGATGATTGTCTGCAG-ACAAATTGGTTC-G-AG-T--GACGGTC-AAAAA-TTGCT------AATGCGTTTCCA----ACAT
gi|7 : CGAATT-ACAAACGATCCGGTACGAATTCT-CAAATTGCC-----TGCT------AT--TTAATCAAATA---T---TCA-AATACT----AGACCTTAATACTGATTCACATT-GGTCTG-A--------ATTGTAG-TCAACA--AGTTGACTCCAGGCT--ATGACAATCGAGGGACTACCTTTTCC-CCA-G-TG-T---G---GC----TGTGTTTA------TG-----ATTATTTTTTAAAAT-----C-AT-TTTG-TTTCA--A--TGTTT-CGTG-T-TTACA-TATT---CATG-TTCAG--A-TTA-T--C-TG-TA-A----TCA-GGCATTATGCTTAAT--TT---AAAAAGAATTA-----AA-----T---G---ACC-GTCA--GG-TATTGTA-G-ATAGGAATGTTTc
gi|8 : GAAT--ACAAAAGA-CCGGTA-GAGTTTT-CAA-TTGCTGCTAGTGCT------AGA-TTGATCAA-TAGACTACATTCCCAC-TTCTCAGG---TCCGC--AGATTCACATTTGGTCTGCA--------CTC-TAGGTCA-CA-AGATT-ACTC-AGG-TGCATGCGCCTGCACT-ACTACCTTGCCCTCCT-GCTG-TCAAG---GTCGACTGCCTCTA------TGGATCTATTGTTTA----AAC-----CTATCTTTGCTTTCAC-A--TGT-T-CGTGAT-TTAC---ATTT-CTATGATTCAG--ATTTAGT--C-CGCTACATTCCTCAGGACATTA----TAAT--TTAGAAAAAAGAATTA-----AA-----TGACC---GCA-GTCA--GGTCATTGTA-Gagcctgtttaccgcgtatgcacattaatg
gi|9 : AGCGAATT-ACAAAAAA-TCGGTA-GAATTTT-CAA-TTGGC-----TGCT------GGA-TTGATCAA-T----------------TT----GG---TCCGCCAAGTATAACATTTGGTCTG-ACCGTCTGAATG-GAGGTCA-CA-TTGTT-AATT-AGG-T--ATGACAATGAAGTGACAACCTTTT-T-TCA-C-TG-T---GC--G-----AGTGCATG------TG------------------------------TTTG-TTTGA--AATTC--T-CTTA-T-TTATATTATAT-CTAGCATTCAG--A-TTAAT--T-AG-CA-A----TCAGAGCA-TA--ATCAACAATTA-AAAAA
Alignments
lowQualScore : 1111111111111111111111111
lowQualScore : 11111 111 1111 11111111 11 3333333333333 111111 33333333333333333 1111111111 44444444444 111 111 111111 111 44444444444444444444 11 555555555555555 5555555555555555 22 222222 1 11 1111111111111111111111111 11 1 3333333 1 2222 33333333333333 11 1 11 444444 1 1 3333333333333333 1 11111 111 111 1111 111 2222222 2222 11111 1111 111 1111 3333333333333333 1111 222222 11111 111 11111 111111111111111 66666666666666666666666 1 111 2222222 11 11 1 111 11 11111 3333333333333 111111 1 111111 1111 1111 11 111 11 11 22222 111 1 1 1 1 1 1 111 2222
lowQualScore : 3 6 3 3 3 44444 888888 2 5 000 3 3333 555 3 6 22222222 3 3 55 3 3 4 66 1 4 00 4 4 2222222222222 222222 00000000000000000 4444444444 5 5 00000000000 000 333 5 66 5 1 66 5 5 777777 0 666 99 99 66666666666666666666 99 11 5 6 0 6 444444444444444 3 1111111111111111 00 4 444444 555 0 33 2 5555555555555555555555555 33 4 0 2 0 4444444 0 1111 3 2 22222222222222 33 0 11 3 111111 0 3 0 5555555555555555 0 88888 444 8 666 0 6 8 3 3 0 4444 111 1111111 4444 66666 7777 3 6 333 6666 6 2 6 9999999999999999 1 6 6 4444 7 2 6 222222 7 99999 888 99 66666 2 8 8 0 888888888888888 0 77777777777777777777777 8 0 444 0 0 0 0 5 6666666 0 1 11 5 8 8 2 33 2 0 777 11 11 77777 99 777 99 5555555555555 6 6 6 6 6 111111 99 6 5 2 6 6 99 99 6 999999 6 7777 8 8 0 7777 8 8 11 1 8 444 8 3 8 8 0 11 11 8 0 8 77 88 6 6 22222 8 444 8 8 0 0 0 0 0 5 666 0000 1
lowQualScore : . . . . . ..... ...... . . ... . .... ... . . ........ . . .. . . . .. . . .. . . ............. ...... ................. .......... . . ........... ... ... . .. . . .. . . ...... . ... .. .. .................... .. .. . . . . ............... . ................ .. . ...... ... . .. . ......................... .. . . . . ....... . .... . . .............. .. . .. . ...... . . . ................ . ..... ... . ... . . . . . . .... ... ....... .... ..... .... . . ... .... . . . ................ . . . .... . . . ...... . ..... ... .. ..... . . . . ............... . ....................... . . ... . . . . . ....... . . .. . . . . .. . . ... .. .. ..... .. ... .. ............. . . . . . ...... .. . . . . . .. .. . ...... . .... . . . .... . . .. . . ... . . . . . .. .. . . . .. .. . . ..... . ... . . . . . . . . ... .... .
lowQualScore : 1 2 1 1 1 33333 222222 9 7 888 1 1111 444 2 7 11111111 3 6 66 6 6 4 11 3 4 99 4 4 3333333333333 888888 88888888888888888 6666666666 0 6 44444444444 999 222 0 99 0 4 99 0 0 888888 1 777 22 88 00000000000000000000 00 00 7 7 8 0 888888888888888 2 0000000000000000 88 2 555555 222 0 88 5 0000000000000000000000000 88 2 0 5 8 0000000 0 2222 2 5 55555555555555 22 0 00 2 555555 0 2 0 2222222222222222 0 44444 000 0 000 2 0 0 2 8 7 2222 777 7777777 2222 77777 0000 2 7 333 2222 7 5 7 2222222222222222 0 7 7 2222 3 5 7 555555 2 22222 333 22 00000 5 0 0 8 666666666666666 8 00000000000000000000000 0 6 000 8 6 8 8 0 0000000 8 0 00 0 0 0 5 88 5 0 555 66 00 88888 22 555 22 0000000000000 7 7 7 7 7 555555 22 7 5 5 7 7 22 22 7 222222 7 0000 0 0 8 0000 0 0 00 0 0 000 0 8 0 0 8 00 00 0 8 0 77 33 7 7 00000 0 000 0 0 0 0 0 0 0 5 000 8888 0
consensus : AGCGAATT-ACAAAAGA-CCGGTA-GAGTTTT-CAA-TTGCC-----TGCT------AGA-TTGATCAA-TAGACT---TTACAAT-TT----GG---TCAGCAAAGATTCACATTTGGTCTG-A--------ATT-TAGGTCA-CA-GAGTT-ACTC-AGG-T--ATGACAATGAAGTGACTACCTTTTCC-CCA-G-TG-T---G---G-----TGTGTTTA------TG-----ATTATT------AAT-----C-AT-TTTG-TTTCA--A--TG--T-CGTG-T-TTACA-TATTT-CTATGATTCAG--A-TTAGT--C-AG-TA-A----TCAGGGCATTA--ATTAAT--TTA-AAAAAAGAATTA-----AA-----T--CG---GCA-GTCA--GGTTATTGTA-GTATAGGAATGTTTGCACGTACA--GT-ATT---A-CTTAAATGATTTTT---T--CGCATTT-C-AGTATTTT-AAAAATATAATGCGT----GTACTACCG-TA--CAACCTTTCAGATGTGCTTTCAC----------CAT---GCA----AGATTTT--ATCACGGAA-CGGTGTA--GAA--TTTTAGTTTTCATTCT-TTAATTTG----AAAGGGGGGT--GG--GGGTGA-TTTAAT-TTTTG-CCTCTG-NACTACTATTTTCATGTGCTGAAA---T-GATT-ATATTA-TATGAT--A-TTA--AATTG-ATAGGTA-TACTTCTTTTGGGTA----AAATGGAAAG---AAACCAT-TCTTTTCCGATGGAGATTATGCTGACTGCAAAT-TCCATCGTGTANTAATCTTTGGAACAAACGG----GG---TTTCTGAAT-------AACTTA-T-TGGCAAT-----CTTCAAATTGTCTGAAGATATA----CACGAAACATTAGG-TCGACCAAGTATTT-TATTTT-CCATAATTC-ATATTTGGA-TGTCCATCTTG-T-------CCACT--GGCAATAACA-CG-TT----TGATTTGCTGAACAATACAACACT-C-A-G--TTTTCCCGATTACATGTATTTCA-G-AAAGGAA--TTTCC-T---CATTGTAAAGGTCAATAATTTCTGTTTTT-G-TTTCTTCAAAAATTTCCTTTTCCATTTCTAAAATATCTCCCCAACT-----------------T-----A-TAAGCTGAATAGG---TGTAAAATTAACGAAGAAATACACTGCTGGGAAGATAAG-------TATTGANC--AAGCCCAAAAAC-TATAAAT-ACTGAAAGGC--TTGCCTAGA-AT---AGCATGAATTCTATT--GGTC--A--AGCATTAAC--AATAG-AAAGGG--GT----------G--TT-TATGAAT-A-G-ATT-GACAAACAGGTGAATGGTAC-A-TG-TGGTCAGTTTAA--GATT-TCTTAAGAAAAAATTGGTGG-G-AGTT--GA--GCT-AGAAATTTGCT------AA-ATGTTTCCA----ACATG-AAGGATTTC-ACAAGAAAAAA----ACAA-CAACC-CTGAAATGT--ATAATGCT-AC---C-TGAAGAA-AACTA-CAGGAAAGACTT--GCA--TAAGAC-ACTGAAATCAACT-CAGATTTA-CCTGTGGAAAGCAATA-TA-TGCTTGAGTAAC-TCTGT-G---ACCTA-AATTCAGACC---AAATG-TGAAT-CTTAGCTGAC-CAAATT-CTAAAG-TCTATTG-ATCAATCCAGCAGG-CAATTGAAAACTCT-ACCGGTC---TTTTGTANTTC
Reference ( family-866 ) : AGCGAATT-ACAAAAGA-CCGGTA-GAGTTTT-CAA-TTGCC-----TGCT------AGA-TTGATCAA-TAGACT---TTACAAT-TT----GG---TCAGCAAAGATTCACATTTGGTCTG-A--------ATT-TAGGTCA-CA-GAGTT-ACTC-AGG-T--ATGACAATGAAGTGACTACCTTTTCC-CCA-G-TG-T---G---G-----TGTGTTTA------TG-----ATTATT------AAT-----C-AT-TTTG-TTTCA--A--TG--T-CGTG-T-TTACA-TATTT-CTATGATTCAG--A-TTAGT--C-AG-TA-A----TCAGGGCATTA--ATTAAT--TTA-AAAAAAGAATTA-----AA-----T--CG---GCA-GTCA--GGTTATTGTA-GTATAGGAATGTTTGCACGTACA--GT-ATT---A-CTTAAATGATTTTT---T--CGCATTT-C-AGTATTTT-AAAAATATAATGCGT----GTACTACCG-TA--CAACCTTTCAGATGTGCTTTCAC----------CAT---GCA----AGATTTT--ATCACGGAA-CGGTGTA--GAA--TTTTAGTTTTCATTCT-TTAATTTG----AAAGGGGGGT--GG--GGGTGA-TTTAAT-TTTTG-CCTCTG-NACTACTATTTTCATGTGCTGAAA---T-GATT-ATATTA-TATGAT--A-TTA--AATTG-ATAGGTA-TACTTCTTTTGGGTA----AAATGGAAAG---AAACCAT-TCTTTTCCGATGGAGATTATGCTGACTGCAAAT-TCCATCGTGTANTAATCTTTGGAACAAACGG----GG---TTTCTGAAT-------AACTTA-T-TGGCAAT-----CTTCAAATTGTCTGAAGATATA----CACGAAACATTAGG-TCGACCAAGTATTT-TATTTT-CCATAATTC-ATATTTGGA-TGTCCATCTTG-T-------CCACT--GGCAATAACA-CG-TT----TGATTTGCTGAACAATACAACACT-C-A-G--TTTTCCCGATTACATGTATTTCA-G-AAAGGAA--TTTCC-T---CATTGTAAAGGTCAATAATTTCTGTTTTT-G-TTTCTTCAAAAATTTCCTTTTCCATTTCTAAAATATCTCCCCAACT-----------------T-----A-TAAGCTGAATAGG---TGTAAAATTAACGAAGAAATACACTGCTGGGAAGATAAG-------TATTGANC--AAGCCCAAAAAC-TATAAAT-ACTGAAAGGC--TTGCCTAGA-AT---AGCATGAATTCTATT--GGTC--A--AGCATTAAC--AATAG-AAAGGG--GT----------G--TT-TATGAAT-A-G-ATT-GACAAACAGGTGAATGGTAC-A-TG-TGGTCAGTTTAA--GATT-TCTTAAGAAAAAATTGGTGG-G-AGTT--GA--GCT-AGAAATTTGCT------AA-ATGTTTCCA----ACATG-AAGGATTTC-ACAAGAAAAAA----ACAA-CAACC-CTGAAATGT--ATAATGCT-AC---C-TGAAGAA-AACTA-CAGGAAAGACTT--GCA--TAAGAC-ACTGAAATCAACT-CAGATTTA-CCTGTGGAAAGCAATA-TA-TGCTTGAGTAAC-TCTGT-G---ACCTA-AATTCAGACC---AAATG-TGAAT-CTTAGCTGAC-CAAATT-CTAAAG-TCTATTG-ATCAATCCAGCAGG-CAATTGAAAACTCT-ACCGGTC---TTTTGTANTTC
gi|1 : AGCGAATTGACATAAGAACCGGTA-GAGTTTTTCAA-TTGCC-----TGCT------AGAATTGATCAA-TAGACT---TTACA-T-TT----GG---TCAGCAAAGATTCACATTTGGTCTG-A--------ATT-TAGGTCA-CATGAGTT-ACTC-AGG-T--ATGACAATGAAGTAACT-CCTTTTCC-CCATG-TGGT---G---GGTG--TGTGTTTACTAGTATG-----ATTATTC-----AAT-----C-AT-TTTG-TTTCAT-A--TG--TTCGTGAT-TTACA-TATTCACTATGATTCAA--A-TTAGT--C-AG-TA-AA---TCAGGGCATTA--ATTAAA--TTA-AAAGAA----TA-----AA--------CG---GCAAGTCAAAGGTTATTGTACGTA-AAGAATGTTTGCACGTACAATGT-ATT---AACTTAAATGATTTTT---TAATGCTTTT-CCAGTATTTTCAAAAATATAATGCGT----GTACTGCTGGTAAACAACCTTTCAGATGTGCTTTC------------CA------A----AGATTTCTAATCACAGAAACGGTGTAAGGAA--TTTTAGTTTTCATTCTATTAATTTG----AC---------------------TTTAAT-TTTTGGCCTCTG-AACTACTATTTTCATGTGC-GAAAAATT-GATTTATATTA-TATGAT--A-TTATAAATTG--TAGGTAATACTTCTTTTGGGTA----AAATGGAAAAGAAAAACCATATCTTTTCTGATGGAGATTATGCTGACTGCAAAT-TCCATCGTGTACTAATCTTTGGAACAAACGG----GG---TTTCTGAAT-------AACTTA-T--GGCAAT-----CTCAAAATTGTCTGAAGATATA----CA-GAAACATTAGGATCGACCAAGTATTT--------------------ATTTGGAATGTCCATCTTGGT-------CCACT--G-CAA-AACAACG-TT----TGATTTGCTGAACA-TACAACACC-C-AAG--TTTTCCTGATTCC--------CA------------------T---CATTGTAAAGGTCAATAATTTCTGTTTTTTG-TTTCTTCAAAA--TTTCTTT-----------AATATCTCCCCAACT-----------------T-----ACTAAACTGAATAGG---TGTAAAATTAACGAAGAAATACACTGCTGGGAAGATAAGTAGGCCATATTGAGCCGAAGCCCGAAAAA-TATAAATAACTGAAAGGCATTTGCCTAGACATATAAGCAATAA-TCTATG--GGTCCAA--GGCATTAACTAAATAGAAAAGGG--GT----------GT-TT-TATGAAT-A-GAATT-GAC-AACAGGTGAATGGTAC-G-TG-TGGTCAGTTTTA--CACT-TCTTAAG-AAAAATTGAAGG-GAAGTTGAGA--GCTAAGAAATTTGCT------AA-ATGTTTCCA----ACATGAAAGGATTTCAACAAGAAAAAA----ACAATCAA-C-CTGAAATGTAAATAATGAT-AC---CGTGAAG---------------AGACTT--GCA--TAAGACAACTG-AATCAACTGCAGATTTA-CCTGTGGAAAGCAATG-TA-TGCTTGAGTAAC-TCTGT-GGACACATAGAATTCAGACCAAAAAATGTTGAATACTTAGCTGACGCAAATTACTAAAATTCTATTGAATCAATCCGTCAGGACAATTG-AAACTCTAACCGGTCTTATTTTGTATTTC
gi|10 : ATTGGTGG-G-AATT--GA--GCT-AGAAGTTTGTTTTAATGAA-ATGTAT-CATGTTACCTG-AAGAAAACT-ACAGGAAAGAGTTGCACAA--GACA-CTGAAATgct
gi|10 : TGAAATGT--ATCATGTT-AC---C-TGAAGAA-AACTA-CAGGAAAGAGTT--GCA--CAAGAC-ACTGAAATCAACT-CAGATTTA-TCTGTGGAAAGCAATA-TA-TGCTCGAGTAAC-TCTGT-G---ACCTA-AATTCAGACC---AAATG-TGAAT-CTTGGCTCAC-CAAATT-GTAAAG-TCTATTG-ATCAATCCAGCAGG-TAATTGAAAACTCT-ACCAGTC---TTTTATAATTcaactcagatttatctgtggaaagcaatatatgctcgagtaactctgtgacctaaattcagaccaaatgtgaatcttggctcaccaaattgtaaagtctattgatcaatccagcaggtaattgaaaactctaccagtcttttataatt
gi|11 : attggtgggaattgagctagaagtttgttttaaTCTTTGATACAAACAG----AGGAATTCTTAAATTTGTAGTAACTTA-T--GACAAT-----CTTCACATTATCTGAAGATATAAGTACATGTAATATTAGG-TCGACCATGTAATC-TATTTT-CTTTAATTC-ATCTTTGGA-TGTCCATTTTG-TGCATCAACAATT--AGCAGTAACA-CA-CTTTTATAATCTATTGAATAATTCAACACT-C------------------CA---ATTTCA-GAAAAGGAA--TTTTCGT---CATTGCAAAGATGAATA
gi|12 : AGCGAATT-ACAAAAGA-CCAGTA-GAGTTTT-CAA-TTGCC-----TGTT------TGA-TTGATCAA-TAGACT---TTACAAT-TT----GG---TCAGCAAAGATTCACAATTGGTCTG-A--------ATT-TCGGTCA-CA-GAGTT-ACTC-AAG-T--ATGACCATGAAGTGACAACTTTTTTT-CC-------T---C---A-----TGTGTGTG------TG-----------------AAT-----C-AG-TTTG-CTT-A-----------CGTG-CAATACATTATTT-CTATGAGTCAGCAA-TCAGT--CGAG-TG-A----
gi|13 : cAGCGAATT-ACAAAAGA-CCGGTA-GAGTTTT-CAA-TTGCC-----TGCT------ACA-TTGATCAA-TAGACT---TTACAAT-TT----GG---TCAGCAAAGATTCACATTTGGTCTG-A--------ATT-TAGGTCA-CA-TAGTT-ACTC-AGG-T--ATGACAATGAAGTGACTACCTTTTCT-CCA-G-TG-T---G---G------GTGTTTA------TG-----ACTGTTA-----AAT-----C-A--------------------------------------TTT-CTAAGATTCAG--A-TTAGT--C-AT-TA-A----TCAGGGCATaggca
gi|14 : cAGCGAATT-ACAAAAGA-CCGGTA-GAGTTTT-CAA-TTGCC-----TGCTAGTGCTAGA-TTGATCAA-TAGACT---TTACAAT-TT----GG---TCAGCAAAGATTCACATTTGGTCTG-A--------ATT-TAGGTCA-CA-GAGTT-ACTC-AGG-T--ATGACAATGAAGTGACCAACTTTTCC-CC--G-TG-TG--G---G-----TGTGTTCA------TG-----ATTATT------
gi|15 : CATG-AAGAATTTC-AAAGAAAAAAA----ACAA-CAACCTCTAGAA-----ACTATGCTCACATAC-TGAACGA-AACTACCAGGAAAG-CTTAAGGAATTAAGA--ACTGAATACAACT-CAG-TTTAGCCTGTGGAAAGCAAT--TACTGC-TGATCAACTTCTGT------TCAA-GATTCAGA-C---ACATG-TGAAT-CTTA
gi|16 : AATAATTTCTTTCTTT-G-CTTCTTCAAAAATTTC-TTTTCCATTTTTAAAATATCGTTCCAGTTCATTATTTTTTAATGGTT-----A-TAAGCTGAAT-GGCATTGTAAAATTCACAAAAGAATACACTGCTCGGTAGATTTG-------TA-TAAAC--AAGACCAAAAGC-TATGAAT-A
gi|17 : GAAT--ACAAAAGA-CCGGTA-GAGTTTT-CAA-TTGCTGCTAGTGCT------AGA-TTGATCAA-TAGACTACATTCCCAC-TTCTCAGG---TCCGC--AGATTCACATTTGGTCTGCA--------CTC-TAGGTCA-CA-AGATT-ACTC-AG
gi|18 : CATTAAC--AATAG-AAAGGG--GT----------G--TT-TATGAAT-AAG-ATT-GACAAACAGGTGAATGGTAC-A-T--TGGTCAGTTTAA--GATT--CTTAAG-AAAAATTGGTGGAG-AGTT--GA--GCT-AGAAATTTGCT------AA-ATGTT
gi|19 : CGAATT-ACAAAAGA-CCGGTA-GAGTTTT-CAT-TTGCC-----TGCT------AGA-TTGATCAA-TAGACT---TTACAAT-TT----GG---TCAGCAAAGATTCACTTTTGGTCTG-A--------ATT-TAGGTCA-CA-GAGTT-ACTC-A
gi|2 : AGCGAATT-ACATAAGA-CCGGTA-GAGTTTT-CAA-TTGCC-----TGCT------AGA-TTGA-AAA-TAGACT---TTACAAT-TT----GG---TCAGCAAAGATTCACATTTGGTCTG-A--------ATT-TAGGTCA-CA-GAGTT-ACTC-AGG-T--ATGACAATGAAGTGACTACCTTTTCC-CCA-G-TG-T---G---G-----TGTGTTTA------TG-----ATTATC------AAT-----C-AT-TTTG-TTTCA--A--TG--T-CGTG-T-TTACA-TATTT-CTATGATTCAA--A-TTAGT--C-AG-TA-A----TCAGGGCATTA--ATTAAT--T---AAAAAAGAATTA-----AA-----T--CG---GCT-GTCA--AGGTATTGTA-GTAAAGGAATGTTTGCACGTACAT-GT-ATA---T-CTTAAATGATTTTTTTAT--TGCATTT-C-AGTATTTCAAAAAATATAATGCTT------------G-TA--CAA-CTTTCAGATGTGCTTTC-------------------------AGATTTT--ATCACAGAA-T-------------TTTTAGTTTTCATTCT-TTAATTTG----AAAGGGGGGT--GG--GGGTGACTTTAAT-TTTTG-CCTCTGAAACTACTATTTTCATGTGCTGAAATT-T-GATT-ATATTATTATGATTAA-TTA--AATTGAATAGGTA-TACTTCTTTTGGGTA----AAATGGAAAG---AAACCGT-TCTTT--CGATGAAGATTATGC-GACTGCAAATATCCATCGTGTAATAATC-TTGGAACAAACAG----GG---TTTCTGAAT-------AACTTA-T-TGGCAAT-----CTTCAAATTGTCTGAAGATATA----CACGAAACATTAGG-TCGACCCAGTATTT-T-TTTT-CTATAATTCAATATTT--A-TGTCCATCTTG-TC------CCACT--GGCAATA--A-CG-TT----TGATTTGCTG-ACAATACAACACT-C-A-G--TTTTCCCGATTACA-GT-TATCA-G-AAAGGAA--TTTCC-T---CATTGTAAAGGTCAATAATTTCTGTTTTT-G-TTTCTTCAAAAATTTCCTTTTCCATTTCTAAAATATCTCCCCAACT-----------------T-----A-TAAACTGAAT-GG---TGTAAATTTAACGAAGAAATACACTGCTGGGAAGATAAG-------TATTGACC--AAGCCCAAAAACATATAAAT-ACTGAAAGGC--TTGCCTAGA-AT---AGCATGAATTCTATT--GGTC--A--AGCATTAAC--AATAG--AAGGG--GT----------G--TT-TATGAAT-A-G-ATT-GACAAACAGGTGAATGGTAC-AGTG-TGGTCAGTTTAA--GAGT-TCTTAAGAAAAAATTGGT-G-G-AGTT--GA--GCT-AGAAATTTGCT-------A-ATGTTTCCA----ACAT--AAGGATTTC-ACAAG---AAA----ACAA-CAACC-CTGAAATGT--ATAATGCT-AC---C-TGAAGAACAACTA-CAGGAAAGACTT--GGA--TAAGAC-ACTGAAATCAACT-CAGATTTA--CTGT-GAAAGCAATATTA-TGCTTGAGTAAC-TCTGTGG---ACCTA-AATTCAGACC---AAATG-TGAAT-CTTAGCTGAC-CAAATT-CTAAAG-TCTATTG-ATCAATCCAGTAGG-CAATTG-AAACTCT-A-CGGTC----TTTGTATTTC
gi|20 : TTTTATT--GAAC--ATTGACAT-AAC--AATAG-A---GG--GTAATACTCTTTG--TTATATTAAT-A-G-ATT-GCCAAACAGATGAATGGTAC-A-TG-TGGTCAATTTAA--GATT-TCTTAAGA
gi|21 : AGTGAATT-ACAAAAGA-CCGGTA-GAGTTTT-CAA-TTACC-----TGCT------AGA-TTGATCAATTAGACT---TTACAAT-TT----GG---TCAGCAAAGATTCACATTTGGTCT--A--------ATT-
gi|22 : GATTATGCTGACTGCAAAT-TCCATCGTGTACTAATCTTTGGAACAAACGG----GG---TTTCTGAAT-------AACTTA---TGGCAAT-----CTTCaaa
gi|23 : GCGAATT-ACAAAAGA-CCGGTA-GAGTTTT-CAA-TTGCC-----TGCT------AGA-CTGTTCAA-TAGACT---TTACAAT-TT----GG---
gi|24 : GCGAATT-ACAAAAGA-CCGGCT-GAGTTTT-CAA-TTGAC-----TTCT------GGA-TAGATCAA-AAGAC
gi|25 : AGATTTA-CCTGTGGAAAGCAATA-TA-TGCTTGGGTAAC-TCc
gi|3 : TCTTTTGGGTT----AAATGGAAAG---AAACTAT-T-------------GATTATGTAGATTACAAAT-TCCATC-----------TTTGGAACAAACAG----GG---TTTCTGAAT-------AACTTA-A-TGGCAATTTAATCTTTAAATTGTCTGAAAATATA----CACGAAACATTAGG-TCGACCAAATATTT-TATTTT-----------------------TCCATC--------------------GCAATAACA-CA-TT----AAATTTGCTGAACAATACAAAACT-CCA-G--TTTTCCCGATTACATGTATTTCA-GGAAAGGAA--TTTCCCT---CATTGTAAAGGTCAATAATTTCTTTCTTT-G-TTTCTTCGAAAATTTC-TTTTCCATTTCTAAAATATCTCCCTAACT-----------------TTTATTA-TAAGCTGAATAGG---TATAAAATTAACGAAGAAATACACTGCTGGGAAGATAAG-------TATTGACC--AAGCCCCAAAAC-TATAAAT-ACTGAAAGGC--TTGCCTAGA-AT---AGCATGAATTCTATT--GGTC--A--AGCATTAAC--AATAT-AGGGAG--GT----------G--TT-TATGAAT-A-G-ATT-GACAAACAGGTGAATGGTAC-T-AG-TGATCAGTTTAA--GATT-TCTTAAAAAAAAATTGGTGG-G-AGTT--GA--GTT-AGAAATTTGCT------AA-ATGTTTCCA----ACATG-AAGGATTTC-ACAAGAAAAAA----ACAA-CAACC-CTGAAATGT--ATAATTCT-AC---C-TGAAGAA-AACCA-CAGGAAAGAGTT--GCA--TAAGAC-ACTGAAATCAACT-CAGATTTA-CCTGTGGAAAGCAATA-TA-TGCTTGAGTAAC-TCTGT-G---ACCTA-AATTCAGACC---AAATG-TGAAT-CTTAGCTGAC-CAAATT-CTAAAG-TCTATTG-ATCAATCCAGTAGG-CAATTGAAAACTCT-A-CAGTC---TTTTGTAATTC
gi|4 : TTATTGTA-GTATAGGAATGTTTGCATGTA-G--G--------A-CCTACATG--------------------T-AGTATTTG-AAAAATATAATGCATACATGTACTACTG-TA--CAACCTTTCAGATGTGCTTTCACTTATACTTACCAT---GCA----AGATTTT--ATCACGGAA-CGGTGTA--GAAATTTTTAGTTTTCTTTCT-TTAATTTG----AAAGGGGGTTAAGG--GGTTGAGTTTAATCTTTTG-CCTCTG-TACTACTATTTTCATGTGCTGAAA---TTGATT-ATATTA-TATGAT--AATTA--AATTG-ATAGGTG-TACTTCTTTTGGGTATTTAAAATGGAAAG---AACCCAT-TCTTTTCTGATGGAGATTATGCTGATTGCAAAT-TCCATCATGTAATAATCTTTGGAACAAACAGCTAGGG---TTTCTGAAT-------AACTTAATATGACAAT-----CTTCAAATTGTCTGAAGATATA----CACGAAACATTAGT-TCGACCAAGTATTT-TATTTTTCCATAATTC-ATATTTGGA-TGTCCATCTTG-T-------CCACT--GACAATAACA-TG-TT----TAATTTGCTGAACAATACAACACTCC-A-A--TTTTCCCGATTACATGTATTTCAGG-AAAGGAA--TTTCC-TTCATATTGTAAAGGTCAATAATTgctg
gi|5 : CC-----TGCT------TGA-TTGATCA--TAGGCT---ATAGAAT-TT----GG---TCAG----------------------A--------ATG-TAGATCG-CA-GAGT---------G-T--ATGACAATGAGGTGATAACCTTTTCC-CCG-G-TG-T---GTGCG-----TGTGTTTA------TG-----ATTATC------AATTGAATC-GT-TGTG-TTTAATTA--T---T-CTTG-T-TTGCA--ATTT-TGATTGTTC------TTGCTTGC-AT-TA------TGAAGGCACAA--TTTAAT--TTA-GAAAAGGAATTATTTCTAACTTGCT--TGATTGCA-GTCA--GGCTACAGTA-GTATAGGTATGTATACATGCATA--ATTATTGTGA-TTTTAATGATTTTT---CTCCGCATTTTC-AGTATTTT-GAAAATATAATACAT----GCACTATCA-TG--CAACCGTTCAGATGTGCAATCACA---------CATTAAGCAAGATAGATTTT--ATTACCGAA-CGGTGCAT-TAA--TTTTAGTTTTCATTCT-TCATTTAGCGGAAAAGGGGGGT--GGGTGGGTAA---TAA---TTTG-CTTTTG-CGCTTCTATTTTCATGTGTTGAA---------T-ATA-----ATAAT--------------------TA-TACTTCTTTTGTGTT----AAGTGAAAAG---AAACCAT-TCTCT
gi|6 : aCATTAGG-TTGACCAAGTATTTATTTTTT-CCATAATTC-ATATTTGGA-TGTCCATCTTG-----------AATGGGGGAATAAC--CGTTT----TGA--TGCTG-GCAATACAA-ACT-C-C-GTTTTTTCCCGATT-C-TGTATTTAG-G-AAAGGAATGTTCCC-T---CATTGTAAAGGT-AATAA-TTATGTTTTT-GTTTTCTTCAAAAATTTCT---------------ATA-CTCC---ACT-----------------T-----A-TAAGCTGAATAGG---TGT-AAATTCATGA--AAAT--ACTGCT-GGAAAATAGA-------TATGGAAC--CAG-CCAAAAAC-TATAAAT-ACT-AAAGCG--TTGC---AA-AT---AGCATGAAT--CATTAGGGT------AGCCTTAAA--CAT-G-AAAGCGACGT----------GTCTT-TATCAGTCA-G-ATTCCACAAACAGATGAAT-GTACAA-TGATGGTCAGTTTAGATGATTGTCTGCAG-ACAAATTGGTTC-G-AG-T--GACGGTC-AAAAA-TTGCT------AATGCGTTTCCA----ACAT
gi|7 : CGAATT-ACAAACGATCCGGTACGAATTCT-CAAATTGCC-----TGCT------AT--TTAATCAAATA---T---TCA-AATACT----AGACCTTAATACTGATTCACATT-GGTCTG-A--------ATTGTAG-TCAACA--AGTTGACTCCAGGCT--ATGACAATCGAGGGACTACCTTTTCC-CCA-G-TG-T---G---GC----TGTGTTTA------TG-----ATTATTTTTTAAAAT-----C-AT-TTTG-TTTCA--A--TGTTT-CGTG-T-TTACA-TATT---CATG-TTCAG--A-TTA-T--C-TG-TA-A----TCA-GGCATTATGCTTAAT--TT---AAAAAGAATTA-----AA-----T---G---ACC-GTCA--GG-TATTGTA-G-ATAGGAATGTTTc
gi|8 : GAAT--ACAAAAGA-CCGGTA-GAGTTTT-CAA-TTGCTGCTAGTGCT------AGA-TTGATCAA-TAGACTACATTCCCAC-TTCTCAGG---TCCGC--AGATTCACATTTGGTCTGCA--------CTC-TAGGTCA-CA-AGATT-ACTC-AGG-TGCATGCGCCTGCACT-ACTACCTTGCCCTCCT-GCTG-TCAAG---GTCGACTGCCTCTA------TGGATCTATTGTTTA----AAC-----CTATCTTTGCTTTCAC-A--TGT-T-CGTGAT-TTAC---ATTT-CTATGATTCAG--ATTTAGT--C-CGCTACATTCCTCAGGACATTA----TAAT--TTAGAAAAAAGAATTA-----AA-----TGACC---GCA-GTCA--GGTCATTGTA-Gagcctgtttaccgcgtatgcacattaatg
gi|9 : AGCGAATT-ACAAAAAA-TCGGTA-GAATTTT-CAA-TTGGC-----TGCT------GGA-TTGATCAA-T----------------TT----GG---TCCGCCAAGTATAACATTTGGTCTG-ACCGTCTGAATG-GAGGTCA-CA-TTGTT-AATT-AGG-T--ATGACAATGAAGTGACAACCTTTT-T-TCA-C-TG-T---GC--G-----AGTGCATG------TG------------------------------TTTG-TTTGA--AATTC--T-CTTA-T-TTATATTATAT-CTAGCATTCAG--A-TTAAT--T-AG-CA-A----TCAGAGCA-TA--ATCAACAATTA-AAAAA
blockSeqs : . T C . A GCTAG AGTGCT . T ACA A CTCA ACC A C CCGTCTGA G A G G C C GC A T A C . CAAGGTCGAC . GATCTATTGTTTA TGAATCGT C C ATGTTT CA ATT . CA T G TG G C CATTCC TGC AA AG TTTCTAACTTGCTTGATT T . G . A TAATTATTGTGA A TTATTGCATTTC CA T ACATGT ACT . . C ACTTATACTTACCATGCA . A . G GAAAT . CGGA A G AAGGGGTTGAGT TC . AA T ATTT . T T TAATTAAATTGAA . ATTTA . . TCT T A G A CTAG GAA TTGTAGT ATAT TTAAT AGTA T . ATT TCCA A G . TGCATCAACAATT G . T TTTA A C C CGTT A ATGTA GA TG TTCA G . T CTTTTCCATTTCTAA CATTATTTTTTAATGGTT . A CAT C . A . A A . G . C . . TT AG ATT . AA AC AATACTCTTTG A C A . C AATGA AT G A G A . . CG . TTAATG T TGTT . . TTGC . T . C C ATA . A C C AA AT . . GC AT C T GG . . . . . . . . . A AC T A
blockSeqs : . . . . . GCTAG . . A ACA . CTCA . A C . . . T . . . . T . A . . GTGCG . ATTATTTTTTAA CTATC . A CATGTT AT ATT . . . G . . . A A . A AATGACC A . T . T CATGTATAT A CTCCGCATTTTC G A GC ATC . . C ACACATTAAGCAAGAT . G . G TTAA . . A T GGGGGTGACT T . T T ATT . T . AATTAAATTGA . A . . C A . G C . . . TT . . C . TA CTT . G . TCCCACT G . . . A C . CAG A ATGTA GG . GT C . . TTTTCCATTTTTAA TTTATT . A . G . C . C . . G . C . . TT . A . AG . GTC . . . . . AGTG . . A G . . . . . . . . . . . . . . T . . . G . . . . . . T A . . G . . . . . . . . . A A T T
blockSeqs : . . . . . . . . . . . . . A . . . . G . . . . C . G . . GGG . ACTGTTA CAG . C AATTCT T AT . . . G . . . A T . A AATCG C . C . T GGA . T T A . . . . . . . C . . . . . A G GGGTGGGTAA . . C T . . . . . . T . . . T . A A . . . AT . . C . TA CTA . G . TCCACT G . . . A A . AG A TGTA GG . CT C . . TTTTCCATTTCTAA T . . . G . C . C . . . . . . . TT . A . AA . G . . . . . ATG . . A G . . . . . . . . . . . . . . A . . . A . . . . . . C A . . G . . . . . . . . . . A . A
blockSeqs : . . . . . . . . . . . . . A . . . . A . . . . T . A . . GGC . ATTATT CAT . C TTATT T AT . . . C . . . A A . . AATG A . T . T T . . . . . . . . . T . . C . TA CCA . . . AATGG A . . . . C . AA . AGT G . T C . . T T . . . . . A . . . . T . . . A . G . . . . . TAG . . . T . . . . . . . . . . . . . . A . . . A . . . . . . C A . . . . . . .
blockSeqs : . . . . . . . . . . . . . A . . . . G . . . . A . T . . GCG . ATTATC CAT . G ATGT T A . . . G . . . A . . . . . . . . T . . T . . . . . G . . . . . . . . AA G . T . . A . G . . . . . AT . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . A . . . . G . . . . T . A . . CA . ATTATC CA . . . T . . . . A . . . A
blockSeqs : . . . . . . . . . . . . . A . . . . G . . . . T . . . . GG . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . C . . . . A . . . . A . . . . GG . .
blockSeqs : . . . . . . . . . . . . . . . . . . T . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . .
blockSeqs : . . . .
blockSeqCons : G* A* GG*********** ****** ATTATT*********** T** A***** A* AATGC*************** N* ** *** TA* CTA* TCANT*********** AG**** ATGTA GG* TTTTCCATTTCTAA* ******* ** TT A**** ** AA* G************ ** ** G**** ***
originalCons : AGCGAATT-ACAAAAGA-CCGGTA-GAGTTTT-CAA-TTGCC-----TGCT------AGA-TTGATCAA-TAGACT---TTACAAT-TT----GG---TCAGCAAAGATTCACATTTGGTCTG-A--------ATT-TAGGTCA-CA-GAGTT-ACTC-AGG-T--ATGACAATGAAGTGACTACCTTTTCC-CCA-G-TG-T---G---G-----TGTGTTTA------TG-----ATTATT------AAT-----C-AT-TTTG-TTTCA--A--TG--T-CGTG-T-TTACA-TATTT-CTATGATTCAG--A-TTAGT--C-AG-TA-A----TCAGGGCATTA--ATTAAT--TTA-AAAAAAGAATTA-----AA-----T--CG---GCA-GTCA--GGTTATTGTA-GTATAGGAATGTTTGCACGTACA--GT-ATT---A-CTTAAATGATTTTT---T--CGCATTT-C-AGTATTTT-AAAAATATAATGCGT----GTACTACCG-TA--CAACCTTTCAGATGTGCTTTCAC----------CAT---GCA----AGATTTT--ATCACGGAA-CGGTGTA--GAA--TTTTAGTTTTCATTCT-TTAATTTG----AAAGGGGGGT--GG--GGGTGA-TTTAAT-TTTTG-CCTCTG-NACTACTATTTTCATGTGCTGAAA---T-GATT-ATATTA-TATGAT--A-TTA--AATTG-ATAGGTA-TACTTCTTTTGGGTA----AAATGGAAAG---AAACCAT-TCTTTTCCGATGGAGATTATGCTGACTGCAAAT-TCCATCGTGTANTAATCTTTGGAACAAACGG----GG---TTTCTGAAT-------AACTTA-T-TGGCAAT-----CTTCAAATTGTCTGAAGATATA----CACGAAACATTAGG-TCGACCAAGTATTT-TATTTT-CCATAATTC-ATATTTGGA-TGTCCATCTTG-T-------CCACT--GGCAATAACA-CG-TT----TGATTTGCTGAACAATACAACACT-C-A-G--TTTTCCCGATTACATGTATTTCA-G-AAAGGAA--TTTCC-T---CATTGTAAAGGTCAATAATTTCTGTTTTT-G-TTTCTTCAAAAATTTCCTTTTCCATTTCTAAAATATCTCCCCAACT-----------------T-----A-TAAGCTGAATAGG---TGTAAAATTAACGAAGAAATACACTGCTGGGAAGATAAG-------TATTGANC--AAGCCCAAAAAC-TATAAAT-ACTGAAAGGC--TTGCCTAGA-AT---AGCATGAATTCTATT--GGTC--A--AGCATTAAC--AATAG-AAAGGG--GT----------G--TT-TATGAAT-A-G-ATT-GACAAACAGGTGAATGGTAC-A-TG-TGGTCAGTTTAA--GATT-TCTTAAGAAAAAATTGGTGG-G-AGTT--GA--GCT-AGAAATTTGCT------AA-ATGTTTCCA----ACATG-AAGGATTTC-ACAAGAAAAAA----ACAA-CAACC-CTGAAATGT--ATAATGCT-AC---C-TGAAGAA-AACTA-CAGGAAAGACTT--GCA--TAAGAC-ACTGAAATCAACT-CAGATTTA-CCTGTGGAAAGCAATA-TA-TGCTTGAGTAAC-TCTGT-G---ACCTA-AATTCAGACC---AAATG-TGAAT-CTTAGCTGAC-CAAATT-CTAAAG-TCTATTG-ATCAATCCAGCAGG-CAATTGAAAACTCT-ACCGGTC---TTTTGTANTTC
finalCons : AGCGAATT-ACAAAAGA-CCGGTA-GAGTTTT-CAA-TTGCC-----TGCT------AGA-TTGATCAA-TAGACT---TTACAAT-TT----GG---TCAGCAAAGATTCACATTTGGTCTG-A--------ATT-TAGGTCA-CAG-AGTT-ACTC-AGG-T--ATGACAATGAAGTGACTACCTTTTCC-CCA-G-TG-TGG-----------TGTGTTTA------TGATTATT-----------AAT-----C-AT-TTTG-TTTCA--A--TG--T-CGTGT--TTACA-TATTT-CTATGATTCAG--A-TTAGT--C-AG-TAA-----TCAGGGCATTA--ATTAAT--TTA-AAAAAAGAATTAAATGC---------------GCN-GTCA--GGTTATTGTA-GTATAGGAATGTTTGCACGTACA--GT-ATT---A-CTTAAATGATTTTT---T--CGCATTT-C-AGTATTTT-AAAAATATAATGCGT----GTACTACCG-TA--CAACCTTTCAGATGTGCTTTCAC----------CAT---GCA----AGATTTT--ATCACGGAA-CGGTGTA--GAA--TTTTAGTTTTCATTCT-TTAATTTG----AAAGGGGGGT--GG--GGGTGA-TTTAAT-TTTTG-CCTCTG-NACTACTATTTTCATGTGCTGAAA---T-GATT-ATATTA-TATGAT--A-TTA--AATTG-ATAGGTA-TACTTCTTTTGGGTA----AAATGGAAAG---AAACCAT-TCTTTTCCGATGGAGATTATGCTGACTGCAAAT-TCCATCGTGTANTAATCTTTGGAACAAACGG----GG---TTTCTGAAT-------AACTTA-T-TGGCAAT-----CTTCAAATTGTCTGAAGATATA----CACGAAACATTAGG-TCGACCAAGTATTTTA-TTTTCTA-TAATTC-ATATTTGGA-TGTCCATCTTGTCANT-----------GGCAATAACA-CG-TT----TGATTTGCTGAACAATACAACACT-CAG----TTTTCCCGATTACATGTATTTCAGG-AAAGGAA--TTTCC-T---CATTGTAAAGGTCAATAATTTCTGTTTTT-G-TTTCTTCAAAAATTTCTTTTCCATTTCTAA-AATATCTCCCCAACT-----------------T-----A-TAAGCTGAATAGG---TGTAAAATTAACGAAGAAATACACTGCTGGGAAGATAAG-------TATTGANC--AAGCCCAAAAAC-TATAAAT-ACTGAAAGGC--TTGCCTAGA-AT---AGCATGAATTCTATT--GGTCA----AGCATTAAC--AATAGAA-AGGG--GTG------------TT-TATGAAT-A-G-ATT-GACAAACAGGTGAATGGTAC-A-TG-TGGTCAGTTTAA--GATT-TCTTAAGAAAAAATTGGTGG-G-AGTT--GA--GCT-AGAAATTTGCT------AA-ATGTTTCCA----ACATG-AAGGATTTC-ACAAGAAAAAA----ACAA-CAACC-CTGAAATGT--ATAATGCT-AC---C-TGAAGAA-AACTA-CAGGAAAGACTT--GCA--TAAGAC-ACTGAAATCAACT-CAGATTTA-CCTGTGGAAAGCAATA-TA-TGCTTGAGTAAC-TCTGTG----ACCTA-AATTCAGACC---AAATG-TGAAT-CTTAGCTGAC-CAAATT-CTAAAG-TCTATTG-ATCAATCCAGCAGG-CAATTGAAAACTCT-ACCGGTC---TTTTGTANTTC
Alignments
lowQualScore : 1111111111111111111111111
lowQualScore : 11111 111 1111 11111111 11 3333333333333 111111 33333333333333333 1111111111 44444444444 111 111 111111 111 55555555555555555555 11 555555555555555 5555555555555555 22 222222 1 11 1111111111111111111111111 11 1 3333333 1 2222 33333333333333 11 1 11 444444 1 1 3333333333333333 1 11111 111 111 1111 111 2222222 2222 11111 1111 2222 555555555555555555 1111 222222 11111 11111 11111111111 66666666666666666666666 1 111 2222222 11 11 1 111 11 11111 3333333333333 111111 1 111111 1111 1111 11 111 11 11 22222 111 1 1 1 1 1 1 111 2222
lowQualScore : 3 6 3 3 3 44444 888888 2 5 000 3 3333 555 3 6 22222222 3 3 55 3 3 4 66 1 4 00 4 4 2222222222222 222222 00000000000000000 4444444444 5 5 00000000000 000 333 5 66 5 1 66 5 5 777777 0 666 99 99 11111111111111111111 99 11 5 6 0 6 444444444444444 3 1111111111111111 00 4 444444 555 0 33 2 5555555555555555555555555 33 4 0 2 0 4444444 0 1111 3 2 22222222222222 33 0 11 3 111111 0 3 0 5555555555555555 0 88888 444 8 666 0 6 8 3 3 0 4444 111 1111111 4444 66666 7777 3 6 0000 999 6 2 6 999999999999999999 1 6 6 4444 7 2 6 222222 7 99999 6 99 66666 2 8 8 0 8 0 33333333333 0 77777777777777777777777 8 0 444 0 0 0 0 5 6666666 0 1 11 5 8 8 2 33 2 0 777 11 11 77777 99 777 99 5555555555555 6 6 6 6 6 111111 99 6 5 2 6 6 99 99 6 999999 6 7777 8 8 0 7777 8 8 11 1 8 444 8 3 8 8 0 11 11 8 0 8 77 88 6 6 22222 8 444 8 8 0 0 0 0 0 5 666 0000 1
lowQualScore : . . . . . ..... ...... . . ... . .... ... . . ........ . . .. . . . .. . . .. . . ............. ...... ................. .......... . . ........... ... ... . .. . . .. . . ...... . ... .. .. .................... .. .. . . . . ............... . ................ .. . ...... ... . .. . ......................... .. . . . . ....... . .... . . .............. .. . .. . ...... . . . ................ . ..... ... . ... . . . . . . .... ... ....... .... ..... .... . . .... ... . . . .................. . . . .... . . . ...... . ..... . .. ..... . . . . . . ........... . ....................... . . ... . . . . . ....... . . .. . . . . .. . . ... .. .. ..... .. ... .. ............. . . . . . ...... .. . . . . . .. .. . ...... . .... . . . .... . . .. . . ... . . . . . .. .. . . . .. .. . . ..... . ... . . . . . . . . ... .... .
lowQualScore : 1 2 1 1 1 33333 222222 9 7 888 1 1111 444 2 7 11111111 3 6 66 6 6 4 11 3 4 99 4 4 3333333333333 888888 88888888888888888 6666666666 0 6 44444444444 999 222 0 99 0 4 99 0 0 888888 1 777 22 88 00000000000000000000 00 00 7 7 8 0 888888888888888 2 0000000000000000 88 2 555555 222 0 88 5 0000000000000000000000000 88 2 0 5 8 0000000 0 2222 2 5 55555555555555 22 0 00 2 555555 0 2 0 2222222222222222 0 44444 000 0 000 2 0 0 2 8 7 2222 777 7777777 2222 77777 0000 2 7 0000 888 7 5 7 888888888888888888 0 7 7 2222 3 5 7 555555 2 22222 7 22 00000 5 0 0 8 0 8 00000000000 8 00000000000000000000000 0 6 000 8 6 8 8 0 0000000 8 0 00 0 0 0 5 88 5 0 555 66 00 88888 22 555 22 0000000000000 7 7 7 7 7 555555 22 7 5 5 7 7 22 22 7 222222 7 0000 0 0 8 0000 0 0 00 0 0 000 0 8 0 0 8 00 00 0 8 0 77 33 7 7 00000 0 000 0 0 0 0 0 0 0 5 000 8888 0
consensus : AGCGAATT-ACAAAAGA-CCGGTA-GAGTTTT-CAA-TTGCC-----TGCT------AGA-TTGATCAA-TAGACT---TTACAAT-TT----GG---TCAGCAAAGATTCACATTTGGTCTG-A--------ATT-TAGGTCA-CA-GAGTT-ACTC-AGG-T--ATGACAATGAAGTGACTACCTTTTCC-CCA-G-TG-T---G---G-----TGTGTTTA------TG-----ATTATT------AAT-----C-AT-TTTG-TTTCA--A--TG--T-CGTG-T-TTACA-TATTT-CTATGATTCAG--A-TTAGT--C-AG-TA-A----TCAGGGCATTA--ATTAAT--TTA-AAAAAAGAATTA-----AA--TG--C------GCA-GTCA--GGTTATTGTA-GTATAGGAATGTTTGCACGTACA--GT-ATT---A-CTTAAATGATTTTT---T--CGCATTT-C-AGTATTTT-AAAAATATAATGCGT----GTACTACCG-TA--CAACCTTTCAGATGTGCTTTCAC----------CAT---GCA----AGATTTT--ATCACGGAA-CGGTGTA--GAA--TTTTAGTTTTCATTCT-TTAATTTG----AAAGGGGGGT--GG--GGGTGA-TTTAAT-TTTTG-CCTCTG-NACTACTATTTTCATGTGCTGAAA---T-GATT-ATATTA-TATGAT--A-TTA--AATTG-ATAGGTA-TACTTCTTTTGGGTA----AAATGGAAAG---AAACCAT-TCTTTTCCGATGGAGATTATGCTGACTGCAAAT-TCCATCGTGTANTAATCTTTGGAACAAACGG----GG---TTTCTGAAT-------AACTTA-T-TGGCAAT-----CTTCAAATTGTCTGAAGATATA----CACGAAACATTAGG-TCGACCAAGTATTT-TA-TTTTCCATAATTC-ATATTTGGA-TGTCCATCTTG--T--C-------ACT--GGCAATAACA-CG-TT----TGATTTGCTGAACAATACAACACT-C-A-G--TTTTCCCGATTACATGTATTTCAGGAAAGGAA--TTTCC-T---CATTGTAAAGGTCAATAATTTCTGTTTTT-G-TTTCTTCAAAAATTT-CTTTTCCATTTCTAAAATATCTCCCCAACT-----------------T-----A-TAAGCTGAATAGG---TGTAAAATTAACGAAGAAATACACTGCTGGGAAGATAAG-------TATTGANC--AAGCCCAAAAAC-TATAAAT-ACTGAAAGGC--TTGCCTAGA-AT---AGCATGAATTCTATT--GGTC--A--AGCATTAAC--AATAG-AAAGGG--GT----------G--TT-TATGAAT-A-G-ATT-GACAAACAGGTGAATGGTAC-A-TG-TGGTCAGTTTAA--GATT-TCTTAAGAAAAAATTGGTGG-G-AGTT--GA--GCT-AGAAATTTGCT------AA-ATGTTTCCA----ACATG-AAGGATTTC-ACAAGAAAAAA----ACAA-CAACC-CTGAAATGT--ATAATGCT-AC---C-TGAAGAA-AACTA-CAGGAAAGACTT--GCA--TAAGAC-ACTGAAATCAACT-CAGATTTA-CCTGTGGAAAGCAATA-TA-TGCTTGAGTAAC-TCTGT-G---ACCTA-AATTCAGACC---AAATG-TGAAT-CTTAGCTGAC-CAAATT-CTAAAG-TCTATTG-ATCAATCCAGCAGG-CAATTGAAAACTCT-ACCGGTC---TTTTGTANTTC
Reference ( family-866 ) : AGCGAATT-ACAAAAGA-CCGGTA-GAGTTTT-CAA-TTGCC-----TGCT------AGA-TTGATCAA-TAGACT---TTACAAT-TT----GG---TCAGCAAAGATTCACATTTGGTCTG-A--------ATT-TAGGTCA-CA-GAGTT-ACTC-AGG-T--ATGACAATGAAGTGACTACCTTTTCC-CCA-G-TG-T---G---G-----TGTGTTTA------TG-----ATTATT------AAT-----C-AT-TTTG-TTTCA--A--TG--T-CGTG-T-TTACA-TATTT-CTATGATTCAG--A-TTAGT--C-AG-TA-A----TCAGGGCATTA--ATTAAT--TTA-AAAAAAGAATTA-----AA--TG--C------GCN-GTCA--GGTTATTGTA-GTATAGGAATGTTTGCACGTACA--GT-ATT---A-CTTAAATGATTTTT---T--CGCATTT-C-AGTATTTT-AAAAATATAATGCGT----GTACTACCG-TA--CAACCTTTCAGATGTGCTTTCAC----------CAT---GCA----AGATTTT--ATCACGGAA-CGGTGTA--GAA--TTTTAGTTTTCATTCT-TTAATTTG----AAAGGGGGGT--GG--GGGTGA-TTTAAT-TTTTG-CCTCTG-NACTACTATTTTCATGTGCTGAAA---T-GATT-ATATTA-TATGAT--A-TTA--AATTG-ATAGGTA-TACTTCTTTTGGGTA----AAATGGAAAG---AAACCAT-TCTTTTCCGATGGAGATTATGCTGACTGCAAAT-TCCATCGTGTANTAATCTTTGGAACAAACGG----GG---TTTCTGAAT-------AACTTA-T-TGGCAAT-----CTTCAAATTGTCTGAAGATATA----CACGAAACATTAGG-TCGACCAAGTATTT-TA-TTTTCTATAATTC-ATATTTGGA-TGTCCATCTTG--T--C-------ANT--GGCAATAACA-CG-TT----TGATTTGCTGAACAATACAACACT-C-A-G--TTTTCCCGATTACATGTATTTCAGGAAAGGAA--TTTCC-T---CATTGTAAAGGTCAATAATTTCTGTTTTT-G-TTTCTTCAAAAATTT-CTTTTCCATTTCTAAAATATCTCCCCAACT-----------------T-----A-TAAGCTGAATAGG---TGTAAAATTAACGAAGAAATACACTGCTGGGAAGATAAG-------TATTGANC--AAGCCCAAAAAC-TATAAAT-ACTGAAAGGC--TTGCCTAGA-AT---AGCATGAATTCTATT--GGTC--A--AGCATTAAC--AATAG-AAAGGG--GT----------G--TT-TATGAAT-A-G-ATT-GACAAACAGGTGAATGGTAC-A-TG-TGGTCAGTTTAA--GATT-TCTTAAGAAAAAATTGGTGG-G-AGTT--GA--GCT-AGAAATTTGCT------AA-ATGTTTCCA----ACATG-AAGGATTTC-ACAAGAAAAAA----ACAA-CAACC-CTGAAATGT--ATAATGCT-AC---C-TGAAGAA-AACTA-CAGGAAAGACTT--GCA--TAAGAC-ACTGAAATCAACT-CAGATTTA-CCTGTGGAAAGCAATA-TA-TGCTTGAGTAAC-TCTGT-G---ACCTA-AATTCAGACC---AAATG-TGAAT-CTTAGCTGAC-CAAATT-CTAAAG-TCTATTG-ATCAATCCAGCAGG-CAATTGAAAACTCT-ACCGGTC---TTTTGTANTTC
gi|1 : AGCGAATTGACATAAGAACCGGTA-GAGTTTTTCAA-TTGCC-----TGCT------AGAATTGATCAA-TAGACT---TTACA-T-TT----GG---TCAGCAAAGATTCACATTTGGTCTG-A--------ATT-TAGGTCA-CATGAGTT-ACTC-AGG-T--ATGACAATGAAGTAACT-CCTTTTCC-CCATG-TGGT---G---GGTG--TGTGTTTACTAGTATG-----ATTATTC-----AAT-----C-AT-TTTG-TTTCAT-A--TG--TTCGTGAT-TTACA-TATTCACTATGATTCAA--A-TTAGT--C-AG-TA-AA---TCAGGGCATTA--ATTAAA--TTA-AAAGAA----TA-----AA--CG---------GCAAGTCAAAGGTTATTGTACGTA-AAGAATGTTTGCACGTACAATGT-ATT---AACTTAAATGATTTTT---TAATGCTTTT-CCAGTATTTTCAAAAATATAATGCGT----GTACTGCTGGTAAACAACCTTTCAGATGTGCTTTC------------CA------A----AGATTTCTAATCACAGAAACGGTGTAAGGAA--TTTTAGTTTTCATTCTATTAATTTG----AC---------------------TTTAAT-TTTTGGCCTCTG-AACTACTATTTTCATGTGC-GAAAAATT-GATTTATATTA-TATGAT--A-TTATAAATTG--TAGGTAATACTTCTTTTGGGTA----AAATGGAAAAGAAAAACCATATCTTTTCTGATGGAGATTATGCTGACTGCAAAT-TCCATCGTGTACTAATCTTTGGAACAAACGG----GG---TTTCTGAAT-------AACTTA-T--GGCAAT-----CTCAAAATTGTCTGAAGATATA----CA-GAAACATTAGGATCGACCAAGTATTT--------------------ATTTGGAATGTCCATCTTGGTC--C-------ACT--G-CAA-AACAACG-TT----TGATTTGCTGAACA-TACAACACC-C-AAG--TTTTCCTGATTCC--------CA-----------------T---CATTGTAAAGGTCAATAATTTCTGTTTTTTG-TTTCTTCAAAA-TTT-CTTT-----------AATATCTCCCCAACT-----------------T-----ACTAAACTGAATAGG---TGTAAAATTAACGAAGAAATACACTGCTGGGAAGATAAGTAGGCCATATTGAGCCGAAGCCCGAAAAA-TATAAATAACTGAAAGGCATTTGCCTAGACATATAAGCAATAA-TCTATG--GGTCCAA--GGCATTAACTAAATAGAAAAGGG--GT----------GT-TT-TATGAAT-A-GAATT-GAC-AACAGGTGAATGGTAC-G-TG-TGGTCAGTTTTA--CACT-TCTTAAG-AAAAATTGAAGG-GAAGTTGAGA--GCTAAGAAATTTGCT------AA-ATGTTTCCA----ACATGAAAGGATTTCAACAAGAAAAAA----ACAATCAA-C-CTGAAATGTAAATAATGAT-AC---CGTGAAG---------------AGACTT--GCA--TAAGACAACTG-AATCAACTGCAGATTTA-CCTGTGGAAAGCAATG-TA-TGCTTGAGTAAC-TCTGT-GGACACATAGAATTCAGACCAAAAAATGTTGAATACTTAGCTGACGCAAATTACTAAAATTCTATTGAATCAATCCGTCAGGACAATTG-AAACTCTAACCGGTCTTATTTTGTATTTC
gi|10 : ATTGGTGG-G-AATT--GA--GCT-AGAAGTTTGTTTTAATGAA-ATGTAT-CATGTTACCTG-AAGAAAACT-ACAGGAAAGAGTTGCACAA--GACA-CTGAAATgct
gi|10 : TGAAATGT--ATCATGTT-AC---C-TGAAGAA-AACTA-CAGGAAAGAGTT--GCA--CAAGAC-ACTGAAATCAACT-CAGATTTA-TCTGTGGAAAGCAATA-TA-TGCTCGAGTAAC-TCTGT-G---ACCTA-AATTCAGACC---AAATG-TGAAT-CTTGGCTCAC-CAAATT-GTAAAG-TCTATTG-ATCAATCCAGCAGG-TAATTGAAAACTCT-ACCAGTC---TTTTATAATTcaactcagatttatctgtggaaagcaatatatgctcgagtaactctgtgacctaaattcagaccaaatgtgaatcttggctcaccaaattgtaaagtctattgatcaatccagcaggtaattgaaaactctaccagtcttttataatt
gi|11 : attggtgggaattgagctagaagtttgttttaaTCTTTGATACAAACAG----AGGAATTCTTAAATTTGTAGTAACTTA-T--GACAAT-----CTTCACATTATCTGAAGATATAAGTACATGTAATATTAGG-TCGACCATGTAATC-TA-TTTTCTTTAATTC-ATCTTTGGA-TGTCCATTTTG--TG-CATCAACAATT--AGCAGTAACA-CA-CTTTTATAATCTATTGAATAATTCAACACT-C------------------CA---ATTTCAGAAAAGGAA--TTTTCGT---CATTGCAAAGATGAATA
gi|12 : AGCGAATT-ACAAAAGA-CCAGTA-GAGTTTT-CAA-TTGCC-----TGTT------TGA-TTGATCAA-TAGACT---TTACAAT-TT----GG---TCAGCAAAGATTCACAATTGGTCTG-A--------ATT-TCGGTCA-CA-GAGTT-ACTC-AAG-T--ATGACCATGAAGTGACAACTTTTTTT-CC-------T---C---A-----TGTGTGTG------TG-----------------AAT-----C-AG-TTTG-CTT-A-----------CGTG-CAATACATTATTT-CTATGAGTCAGCAA-TCAGT--CGAG-TG-A----
gi|13 : cAGCGAATT-ACAAAAGA-CCGGTA-GAGTTTT-CAA-TTGCC-----TGCT------ACA-TTGATCAA-TAGACT---TTACAAT-TT----GG---TCAGCAAAGATTCACATTTGGTCTG-A--------ATT-TAGGTCA-CA-TAGTT-ACTC-AGG-T--ATGACAATGAAGTGACTACCTTTTCT-CCA-G-TG-T---G---G------GTGTTTA------TG-----ACTGTTA-----AAT-----C-A--------------------------------------TTT-CTAAGATTCAG--A-TTAGT--C-AT-TA-A----TCAGGGCATaggca
gi|14 : cAGCGAATT-ACAAAAGA-CCGGTA-GAGTTTT-CAA-TTGCC-----TGCTAGTGCTAGA-TTGATCAA-TAGACT---TTACAAT-TT----GG---TCAGCAAAGATTCACATTTGGTCTG-A--------ATT-TAGGTCA-CA-GAGTT-ACTC-AGG-T--ATGACAATGAAGTGACCAACTTTTCC-CC--G-TG-TG--G---G-----TGTGTTCA------TG-----ATTATT------
gi|15 : CATG-AAGAATTTC-AAAGAAAAAAA----ACAA-CAACCTCTAGAA-----ACTATGCTCACATAC-TGAACGA-AACTACCAGGAAAG-CTTAAGGAATTAAGA--ACTGAATACAACT-CAG-TTTAGCCTGTGGAAAGCAAT--TACTGC-TGATCAACTTCTGT------TCAA-GATTCAGA-C---ACATG-TGAAT-CTTA
gi|16 : AATAATTTCTTTCTTT-G-CTTCTTCAAAAATTT-CTTTTCCATTTTTAAAATATCGTTCCAGTTCATTATTTTTTAATGGTT-----A-TAAGCTGAAT-GGCATTGTAAAATTCACAAAAGAATACACTGCTCGGTAGATTTG-------TA-TAAAC--AAGACCAAAAGC-TATGAAT-A
gi|17 : GAAT--ACAAAAGA-CCGGTA-GAGTTTT-CAA-TTGCTGCTAGTGCT------AGA-TTGATCAA-TAGACTACATTCCCAC-TTCTCAGG---TCCGC--AGATTCACATTTGGTCTGCA--------CTC-TAGGTCA-CA-AGATT-ACTC-AG
gi|18 : CATTAAC--AATAG-AAAGGG--GT----------G--TT-TATGAAT-AAG-ATT-GACAAACAGGTGAATGGTAC-A-T--TGGTCAGTTTAA--GATT--CTTAAG-AAAAATTGGTGGAG-AGTT--GA--GCT-AGAAATTTGCT------AA-ATGTT
gi|19 : CGAATT-ACAAAAGA-CCGGTA-GAGTTTT-CAT-TTGCC-----TGCT------AGA-TTGATCAA-TAGACT---TTACAAT-TT----GG---TCAGCAAAGATTCACTTTTGGTCTG-A--------ATT-TAGGTCA-CA-GAGTT-ACTC-A
gi|2 : AGCGAATT-ACATAAGA-CCGGTA-GAGTTTT-CAA-TTGCC-----TGCT------AGA-TTGA-AAA-TAGACT---TTACAAT-TT----GG---TCAGCAAAGATTCACATTTGGTCTG-A--------ATT-TAGGTCA-CA-GAGTT-ACTC-AGG-T--ATGACAATGAAGTGACTACCTTTTCC-CCA-G-TG-T---G---G-----TGTGTTTA------TG-----ATTATC------AAT-----C-AT-TTTG-TTTCA--A--TG--T-CGTG-T-TTACA-TATTT-CTATGATTCAA--A-TTAGT--C-AG-TA-A----TCAGGGCATTA--ATTAAT--T---AAAAAAGAATTA-----AA--TC--G------GCT-GTCA--AGGTATTGTA-GTAAAGGAATGTTTGCACGTACAT-GT-ATA---T-CTTAAATGATTTTTTTAT--TGCATTT-C-AGTATTTCAAAAAATATAATGCTT------------G-TA--CAA-CTTTCAGATGTGCTTTC-------------------------AGATTTT--ATCACAGAA-T-------------TTTTAGTTTTCATTCT-TTAATTTG----AAAGGGGGGT--GG--GGGTGACTTTAAT-TTTTG-CCTCTGAAACTACTATTTTCATGTGCTGAAATT-T-GATT-ATATTATTATGATTAA-TTA--AATTGAATAGGTA-TACTTCTTTTGGGTA----AAATGGAAAG---AAACCGT-TCTTT--CGATGAAGATTATGC-GACTGCAAATATCCATCGTGTAATAATC-TTGGAACAAACAG----GG---TTTCTGAAT-------AACTTA-T-TGGCAAT-----CTTCAAATTGTCTGAAGATATA----CACGAAACATTAGG-TCGACCCAGTATTT-T--TTTTCTATAATTCAATATTT--A-TGTCCATCTTG--TCCC-------ACT--GGCAATA--A-CG-TT----TGATTTGCTG-ACAATACAACACT-C-A-G--TTTTCCCGATTACA-GT-TATCA-GAAAGGAA--TTTCC-T---CATTGTAAAGGTCAATAATTTCTGTTTTT-G-TTTCTTCAAAAATTTCCTTTTCCATTTCTAAAATATCTCCCCAACT-----------------T-----A-TAAACTGAAT-GG---TGTAAATTTAACGAAGAAATACACTGCTGGGAAGATAAG-------TATTGACC--AAGCCCAAAAACATATAAAT-ACTGAAAGGC--TTGCCTAGA-AT---AGCATGAATTCTATT--GGTC--A--AGCATTAAC--AATAG--AAGGG--GT----------G--TT-TATGAAT-A-G-ATT-GACAAACAGGTGAATGGTAC-AGTG-TGGTCAGTTTAA--GAGT-TCTTAAGAAAAAATTGGT-G-G-AGTT--GA--GCT-AGAAATTTGCT-------A-ATGTTTCCA----ACAT--AAGGATTTC-ACAAG---AAA----ACAA-CAACC-CTGAAATGT--ATAATGCT-AC---C-TGAAGAACAACTA-CAGGAAAGACTT--GGA--TAAGAC-ACTGAAATCAACT-CAGATTTA--CTGT-GAAAGCAATATTA-TGCTTGAGTAAC-TCTGTGG---ACCTA-AATTCAGACC---AAATG-TGAAT-CTTAGCTGAC-CAAATT-CTAAAG-TCTATTG-ATCAATCCAGTAGG-CAATTG-AAACTCT-A-CGGTC----TTTGTATTTC
gi|20 : TTTTATT--GAAC--ATTGACAT-AAC--AATAG-A---GG--GTAATACTCTTTG--TTATATTAAT-A-G-ATT-GCCAAACAGATGAATGGTAC-A-TG-TGGTCAATTTAA--GATT-TCTTAAGA
gi|21 : AGTGAATT-ACAAAAGA-CCGGTA-GAGTTTT-CAA-TTACC-----TGCT------AGA-TTGATCAATTAGACT---TTACAAT-TT----GG---TCAGCAAAGATTCACATTTGGTCT--A--------ATT-
gi|22 : GATTATGCTGACTGCAAAT-TCCATCGTGTACTAATCTTTGGAACAAACGG----GG---TTTCTGAAT-------AACTTA---TGGCAAT-----CTTCaaa
gi|23 : GCGAATT-ACAAAAGA-CCGGTA-GAGTTTT-CAA-TTGCC-----TGCT------AGA-CTGTTCAA-TAGACT---TTACAAT-TT----GG---
gi|24 : GCGAATT-ACAAAAGA-CCGGCT-GAGTTTT-CAA-TTGAC-----TTCT------GGA-TAGATCAA-AAGAC
gi|25 : AGATTTA-CCTGTGGAAAGCAATA-TA-TGCTTGGGTAAC-TCc
gi|3 : TCTTTTGGGTT----AAATGGAAAG---AAACTAT-T-------------GATTATGTAGATTACAAAT-TCCATC-----------TTTGGAACAAACAG----GG---TTTCTGAAT-------AACTTA-A-TGGCAATTTAATCTTTAAATTGTCTGAAAATATA----CACGAAACATTAGG-TCGACCAAATATTT-TA-TTTT----------------------TCCATC----------------------GCAATAACA-CA-TT----AAATTTGCTGAACAATACAAAACT-CCA-G--TTTTCCCGATTACATGTATTTCAGGAAAGGAA--TTTCCCT---CATTGTAAAGGTCAATAATTTCTTTCTTT-G-TTTCTTCGAAAATTT-CTTTTCCATTTCTAAAATATCTCCCTAACT-----------------TTTATTA-TAAGCTGAATAGG---TATAAAATTAACGAAGAAATACACTGCTGGGAAGATAAG-------TATTGACC--AAGCCCCAAAAC-TATAAAT-ACTGAAAGGC--TTGCCTAGA-AT---AGCATGAATTCTATT--GGTC--A--AGCATTAAC--AATAT-AGGGAG--GT----------G--TT-TATGAAT-A-G-ATT-GACAAACAGGTGAATGGTAC-T-AG-TGATCAGTTTAA--GATT-TCTTAAAAAAAAATTGGTGG-G-AGTT--GA--GTT-AGAAATTTGCT------AA-ATGTTTCCA----ACATG-AAGGATTTC-ACAAGAAAAAA----ACAA-CAACC-CTGAAATGT--ATAATTCT-AC---C-TGAAGAA-AACCA-CAGGAAAGAGTT--GCA--TAAGAC-ACTGAAATCAACT-CAGATTTA-CCTGTGGAAAGCAATA-TA-TGCTTGAGTAAC-TCTGT-G---ACCTA-AATTCAGACC---AAATG-TGAAT-CTTAGCTGAC-CAAATT-CTAAAG-TCTATTG-ATCAATCCAGTAGG-CAATTGAAAACTCT-A-CAGTC---TTTTGTAATTC
gi|4 : TTATTGTA-GTATAGGAATGTTTGCATGTA-G--G--------A-CCTACATG--------------------T-AGTATTTG-AAAAATATAATGCATACATGTACTACTG-TA--CAACCTTTCAGATGTGCTTTCACTTATACTTACCAT---GCA----AGATTTT--ATCACGGAA-CGGTGTA--GAAATTTTTAGTTTTCTTTCT-TTAATTTG----AAAGGGGGTTAAGG--GGTTGAGTTTAATCTTTTG-CCTCTG-TACTACTATTTTCATGTGCTGAAA---TTGATT-ATATTA-TATGAT--AATTA--AATTG-ATAGGTG-TACTTCTTTTGGGTATTTAAAATGGAAAG---AACCCAT-TCTTTTCTGATGGAGATTATGCTGATTGCAAAT-TCCATCATGTAATAATCTTTGGAACAAACAGCTAGGG---TTTCTGAAT-------AACTTAATATGACAAT-----CTTCAAATTGTCTGAAGATATA----CACGAAACATTAGT-TCGACCAAGTATTT-TATTTTTCCATAATTC-ATATTTGGA-TGTCCATCTTG--TC-C-------ACT--GACAATAACA-TG-TT----TAATTTGCTGAACAATACAACACTCC-A-A--TTTTCCCGATTACATGTATTTCAGGAAAGGAA--TTTCC-TTCATATTGTAAAGGTCAATAATTgctg
gi|5 : CC-----TGCT------TGA-TTGATCA--TAGGCT---ATAGAAT-TT----GG---TCAG----------------------A--------ATG-TAGATCG-CA-GAGT---------G-T--ATGACAATGAGGTGATAACCTTTTCC-CCG-G-TG-T---GTGCG-----TGTGTTTA------TG-----ATTATC------AATTGAATC-GT-TGTG-TTTAATTA--T---T-CTTG-T-TTGCA--ATTT-TGATTGTTC------TTGCTTGC-AT-TA------TGAAGGCACAA--TTTAAT--TTA-GAAAAGGAATTATTTCTAACTTG--CTTGATTGCA-GTCA--GGCTACAGTA-GTATAGGTATGTATACATGCATA--ATTATTGTGA-TTTTAATGATTTTT---CTCCGCATTTTC-AGTATTTT-GAAAATATAATACAT----GCACTATCA-TG--CAACCGTTCAGATGTGCAATCACA---------CATTAAGCAAGATAGATTTT--ATTACCGAA-CGGTGCAT-TAA--TTTTAGTTTTCATTCT-TCATTTAGCGGAAAAGGGGGGT--GGGTGGGTAA---TAA---TTTG-CTTTTG-CGCTTCTATTTTCATGTGTTGAA---------T-ATA-----ATAAT--------------------TA-TACTTCTTTTGTGTT----AAGTGAAAAG---AAACCAT-TCTCT
gi|6 : aCATTAGG-TTGACCAAGTATTTATT-TTTTCCATAATTC-ATATTTGGA-TGTCCATCTTG-------------AATGGGGGAATAAC--CGTTT----TGA--TGCTG-GCAATACAA-ACT-C-C-GTTTTTTCCCGATT-C-TGTATTT-AGGAAAGGAATGTTCCC-T---CATTGTAAAGGT-AATAA-TTATGTTTTT-GTTTTCTTCAAAAATTT-CT--------------ATA-CTCC---ACT-----------------T-----A-TAAGCTGAATAGG---TGT-AAATTCATGA--AAAT--ACTGCT-GGAAAATAGA-------TATGGAAC--CAG-CCAAAAAC-TATAAAT-ACT-AAAGCG--TTGC---AA-AT---AGCATGAAT--CATTAGGGT------AGCCTTAAA--CAT-G-AAAGCGACGT----------GTCTT-TATCAGTCA-G-ATTCCACAAACAGATGAAT-GTACAA-TGATGGTCAGTTTAGATGATTGTCTGCAG-ACAAATTGGTTC-G-AG-T--GACGGTC-AAAAA-TTGCT------AATGCGTTTCCA----ACAT
gi|7 : CGAATT-ACAAACGATCCGGTACGAATTCT-CAAATTGCC-----TGCT------AT--TTAATCAAATA---T---TCA-AATACT----AGACCTTAATACTGATTCACATT-GGTCTG-A--------ATTGTAG-TCAACA--AGTTGACTCCAGGCT--ATGACAATCGAGGGACTACCTTTTCC-CCA-G-TG-T---G---GC----TGTGTTTA------TG-----ATTATTTTTTAAAAT-----C-AT-TTTG-TTTCA--A--TGTTT-CGTG-T-TTACA-TATT---CATG-TTCAG--A-TTA-T--C-TG-TA-A----TCA-GGCATTATGCTTAAT--TT---AAAAAGAATTA-----AA--TG---------ACC-GTCA--GG-TATTGTA-G-ATAGGAATGTTTc
gi|8 : GAAT--ACAAAAGA-CCGGTA-GAGTTTT-CAA-TTGCTGCTAGTGCT------AGA-TTGATCAA-TAGACTACATTCCCAC-TTCTCAGG---TCCGC--AGATTCACATTTGGTCTGCA--------CTC-TAGGTCA-CA-AGATT-ACTC-AGG-TGCATGCGCCTGCACT-ACTACCTTGCCCTCCT-GCTG-TCAAG---GTCGACTGCCTCTA------TGGATCTATTGTTTA----AAC-----CTATCTTTGCTTTCAC-A--TGT-T-CGTGAT-TTAC---ATTT-CTATGATTCAG--ATTTAGT--C-CGCTACATTCCTCAGGACATTA----TAAT--TTAGAAAAAAGAATTA-----AA--TGACC------GCA-GTCA--GGTCATTGTA-Gagcctgtttaccgcgtatgcacattaatg
gi|9 : AGCGAATT-ACAAAAAA-TCGGTA-GAATTTT-CAA-TTGGC-----TGCT------GGA-TTGATCAA-T----------------TT----GG---TCCGCCAAGTATAACATTTGGTCTG-ACCGTCTGAATG-GAGGTCA-CA-TTGTT-AATT-AGG-T--ATGACAATGAAGTGACAACCTTTT-T-TCA-C-TG-T---GC--G-----AGTGCATG------TG------------------------------TTTG-TTTGA--AATTC--T-CTTA-T-TTATATTATAT-CTAGCATTCAG--A-TTAAT--T-AG-CA-A----TCAGAGCA-TA--ATCAACAATTA-AAAAA