lowQualScore : 111111111111111111111111111111111111111 11111111111111111111111111111111111111 11111111111111111 1111111111111111111111111111111111111111111111111111 1111111111111111111 111111111111111 666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 1111111111111111111111111111111111111111111 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 11 4 2222222222 88888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 1 11 1 11 1 2222222222 2222 111 1111 111 11 11 1111 22 5555555 111 111 55555555555555555555 111111111111111111111111111111111111111 1 55555555 11 33 11 00000000000000000000000000000000000000 33333 555555555 00000000000000000 4444 222 33 444 1 1 333 7777777777777 8888888888888888888888888888888888888888888888888888 111 11 33 333333333 1 1 666666666666 1 1 6666666 55555555 111 11 4444 2 55 0000000000000000000 1 4 1 333333333333333 888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 4 33 55 88888888888888888888 33333 44444444 22 1111111111111111111111111111111111111111111 444444444 1 55555555 22 11111 11 222 1 1 1111 33 3 1 2 1 1 2222222 777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 222 11 222 555555 1 22 1 1 1 444444444444444 22 1 888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 33333
lowQualScore : 22 6 0 4 1 66 6666666666 0 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 6 00 0 33 2 7 4444444444 6666 999 2222 333 33 33 8888 33 3 4 4444444 666 1 222 2 6 11111111111111111111 666666666666666666666666666666666666666 2 0 99999999 8 33 00 33 44444444444444444444444444444444444444 0 6 6 22222 6 6 666666666 6 3 22222222222222222 3333 6 6 666 55 222 3 3 999 8 7777777777777 4444444444444444444444444444444444444444444444444444 1 999 44 0 66 999999999 5 4 5 6 888888888888 3 0 7777777 77777777 000 7 88 55 8888 0 55 7777777777777777777 6 7 0 7 555555555555555 7 000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 0 6 4 00 55 4 6 44444444444444444444 88888 99999999 6 22 5555555555555555555555555555555555555555555 444444444 3 99999999 4 4 22 7 77777 88 111 0 3 0 1111 8 33 8 2 2 0 0 2 0 0 0 5555555 2 444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 333 33 666 3 000000 0 33 0 0 0 5 4 333333333333333 22 2 0 999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 2 66666 3 6
lowQualScore : .. . . . . .. .......... . ....................................................................................................................... . .. . .. . . .......... .... ... .... ... .. .. .... .. . . ....... ... . ... . . .................... ....................................... . . ........ . .. .. .. ...................................... . . . ..... . . ......... . . ................. .... . . ... .. ... . . ... . ............. .................................................... . ... .. . .. ......... . . . . ............ . . ....... ........ ... . .. .. .... . .. ................... . . . . ............... . ................................................................................................................................................................................................................................................................................................................................................................................................................................. . . . .. .. . . .................... ..... ........ . .. ........................................... ......... . ........ . . .. . ..... .. ... . . . .... . .. . . . . . . . . . ....... . ....................................................................................... ... .. ... . ...... . .. . . . . . ............... .. . . ......................................................................................................... . ..... . .
lowQualScore : 00 0 0 0 7 11 6666666666 8 22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 0 22 0 88 0 3 6666666666 2222 000 0000 555 00 88 5555 88 5 0 2222222 555 0 555 5 0 00000000000000000000 000000000000000000000000000000000000000 5 0 88888888 3 88 00 88 55555555555555555555555555555555555555 2 7 0 00000 7 7 000000000 0 0 00000000000000000 5555 0 0 555 55 555 3 3 777 3 0000000000000 7777777777777777777777777777777777777777777777777777 0 333 00 7 77 777777777 5 0 5 7 777777777777 3 0 0000000 00000000 000 3 33 00 5555 0 00 0000000000000000000 0 0 0 0 000000000000000 3 333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 0 0 0 00 00 0 0 77777777777777777777 77777 00000000 7 00 3333333333333333333333333333333333333333333 555555555 3 33333333 0 0 00 3 33333 33 777 0 2 5 8888 0 88 0 0 8 2 5 2 0 0 0 8888888 5 000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 333 77 000 2 111111 6 44 6 0 0 0 0 555555555555555 55 5 5 333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 5 00000 0 0
consensus : AAGTTTTATATCANTTTTTAGCTCACC--TGAGCC----G-----AAGGCTCA-A----G-TG-AGCTTTTCTG-TGAT--CAAAATTTGTC-GTT--TCTGTCGTC------GTCG---TTGTCGTA--AAAC-TTTTCAC-A-TTTCA--AT--T--CTTCT------CGAGAACCAC-TGG-CC--AAATTCAACCAAACCTCGGT----ACA---AATCA-CCTT-GG-GTGA-AGGGGATTC--AA-T--TTGTT-CNAANG---A-G-GGACCNN-GCCCCNTNAAAGGGGANATAATCACGAAAATGCAAAAACAGGGTGNNGTNNTTTAAAAAT--TCTTCTCAAG-A--ACTGGG-C--CAAAG---GAAAAT---T--N-AC-GAAGGCTT-CCTGA--TATG-GTGGAGATT--CAAG-TTTG--TTCAAATCAT------G-ACCCCCC----------------------GGGGGTAGGGCGGGGCCAC-AA-TATGGGATCAAAGTTTTACAT-NCG-AA--TATATAGGGGAANTCTTCTTNAAAATCCTCTTCTCTGAAGAACACACTGGGCCAGAAAAGNNGAAATATTCATACNGAAAGCTT-CCTG-ATA--AGTGGAGATTT--AA---GTT-TGTTCAAATCA------CG-ACCGCCG-----------------------GGGATAGGGC-GGGGGCCA-C-ATTA-GGATTAAAGGTTTTACA-T---GAA-ATATATATAGGGAAANCGTTAAAAATCCTCTTCTCAAGAACCAC--TGGGCCAGAAAAGCTGAA-ATTTATATGAAAGCTT-CCTGATATANANTGGAGATTTCCAAGT-TTGTTCAAAATCATGA--CCCNNGGGTACTAGGGTGGGGCCA--CAATAG-GGGA---TCAAAGTT--TTACACGTGTATATA-AGAAAAATCTTTAAAA----------CTTCTCAAGAACCACTGGGCCAGAAAAA------AAAATTTCTA-C--TGAAAGCTTCCTGATATTG--TGGAAGGAT------T--AGTTT--GTTCAAAT---CATGGNCCCCGG-GGGT--AC-GGTGG-GGCCACAA-CAGGGGATCAAAGTTTTACGTGTNTACAT-GTGANGTGTATATANNGGG--AGANTCTTTT-AAAA-------CTT---------AAG--AACCACT--GGGC-CAGAA-AAGC---AA--TTTCA-TATGAAA--GCTT-CTTGATATAGTGGATA-GATT--CAAGTTT--GTTCAAATCATGACCCCCGGGNATACGAAGTGGGGCCACAAT-G--GGGATCAA---AGGTT------TA-C-ATATG--AATATATAGGGAAAAT--CGT-TAAAAATCTT-CT-TGTGAAGA-ACCACTGGG-CCAGAANAGCTGAAA--TTCATANGAAAGC---TT--CTTGA-TATAGT-GGAGATT-CAA-GTTTGT-TCAAA--TCATGACCGCCG-GGAG---GGTTA-GATGGGGC---------CACA-NTAGGGGATC-AAAGTTTTACAT-GCG--AA-TATATA-GGAAAAA-TC-TT-AAAATCCTCTTNT-CAAGAACCACTGGGCCAGAA-AAA-TGAA--ATTTATATGAAAGCTT-CCTGATATAGTGGAGA--TTCAAGTTT-G-TTC-AAATCATGACTCCCGGGGGTANGGTGGG-G-CCAC-A--TANGGGATCAAAGTTTTACATGT-----CGNGATG--TAT--ATAGGGAGAATCTTT---AAAAATCCT--TCTCAAGAACCA--CTGGGNC--GAAAAAAAC--GAA-ATTTATA---TGAAAGATTCCTGATATAGTGGAG-AT-ATTCAAGTTT-TGTTCAAATCATGA-CC-CTGGGGGTANGGCGGGGNNNNAACTANNGGATCAAANTTTTACATNCGNATATATNATGTGTATATATCGGNNGANTNTTT---AAAANCCTCTTCTCAAGAACTAAACCTGGACCAGAAGAAANAANATACTNACCTNAAAGCATTCCTGA-TATAGGAGTANATTCAAGTTTGNGNTCAGATCA
Reference ( gi|1 ) : AAACTTCATAT-ATTTTTTAGCTCACC--TGAGCC----G-----AAGGCTCATA----G-TG-ATCTTTTCTGTTGAT--CAAAATTTGTC-GTTGGTCTGTCGTC------GTCG---TTGTCGTA--AAACGTTTTCAC-A-TTTCA--AT--T--CTTCT------CAAGA-CCAC-TGG-TC--AAATTCAACCAAACTTTGGT----ACA---CATCA-CCTT-GG-GTGA-AGGGGCTTC--AA-T--TTGT--CAAATGGGAA-G-GGACCAG-GCCTCACCAAAGGGGAGATAATCATGAAAATGCAAAAATAGG--GGTGTATTTTAAAAATCTTCTTCTCAAG-ACCACTGGG-CAGCAAAGCTGGAAAAT---T--A-ATGGAAGGCTT-CCTGAAATATACGAGGAGATT--CAAGGTTTG--TTCAAATCAT------G-ACCCCCC----------------------GGGGGTACGATGGGGCCA--AA-TAGGGGATCAAAGTTTTACAT-ACG-GAT-TATATAGGAGAAATCTTCTTAAAAATCTTCTTCTCTCAAGAACGCACTAGGCCAGGAAA-CTGAAAT-TTTATATTGAAAGCTT-CCTG-ATGTTAGAGGAGATGT--AAAGTGTTGTGTTCAAATC-------TG-ACCCCCC-----------------------GGGGTACGATTGGAGGCCA-CAATTAGGGATCAAA--TTTTACA-T---GAG-ATATATATAGGGAAATCTTTAAAAATCTTCTTCTCAAGAACCACTATGGGCCAGGAAAGCTGAA-ATTTATATGAAAGCTT-CCTGAT-TAGAG-GGAGATTACAAAGTGTTGTTCAAAATCATGA--CCCGGGGGTACTATGGT-GGGCCATTCAATAGTGGGAAGGTCCAAATTGGGTACATGAGTATATAGAGATAAATCTTTAAAAATGCTTCTTTCTTCTCAAGAACCACTGGGCCAGGTAAACTGCTGAAAATTTTTAATAGTGAAAGCGTTCTGATATTAGATGGGAGGATAGTGCATAGGGTTT--GTTCAAATGTGCATGGACGCCGGAGGGTGGACTGATGGTGGCCCCAAGTAGGGGATCAAG----TGCAT-TTTA-ATCATGAT---TAT-TAGAGGGTAAAAATCTTTTAAAAAGATCTTTCTTCACGTACATAAGCTAACCACTTTGGGCTCAGGA-AAGCTTGAAGGTTTGAGTATGGAACGGCTT-CCTGA-ATAGTGGGTACGATT--CAAGTTT--GTTCAAATCATGACCCCCGGGTA-ACGTAGTGGGGCCCCAATGACAGGAATCAATTGAGGTT--AGCATACTGATAT---AATATATAGGGAGAATATCTTACAAAAATCTTTCTATTTCAAGATACCACTGGGGCCAGGAAATGTGAAAATTTTATATGGAAGCGGGTTGCCTTGAATATAGAAGGAGATTACCA-GTTTGTGTCAAAAATCATGACCCCCGAGGAGCTCGGTTACTATGGGGC---------C-CA-TTAGGGGATCCAAAGTTTTACAT-ATG--AT-TATATA-GGAAAAAATC-TTAAAAATCTTCTTTTTCAAGAACCACTGGGCCAGAA-AGA-TGAA--ATTTATATTGGAGCTT-CCTGATATAGAGGAGA--TTCAAGTTT-GATTC-AAATCA-GACCCCCGGGGGTATGAT-GG-G-CCAC-A--TAGGGGATCAAAGTTTTACATGC-----CAGAAT---TAT-CATAGAGAAAATCTTT---AAAAATCTTCTTCTCAAGAACCGCCCTGCGGC--GAGGAAAGCTGGAA-ATTTATA---TGAAATCTTCGT-ATATAGTGGAG-ATGGTTCAAGTTT-TGTTCAAATCATGA-TC-CTCGGGGTATGAT-GAGCCCCAATTAGGGGATCAAAG-TTTACATGCAGATATATA-------------GAGAAATTCTTT---AAAAATCTTTT-TCGAG----A---TTGAACCAGGA-AGATTATGT-TTTACC-GAAGAC-TTC-TGACTAT-GC-GTAGATTTAAGGT--GGTTCAGATTAAATGCCTCCACCGA
gi|2 : AAGTTTTATATCAATTATTAACTCACC--TGAGCA----G-----AAGGCTCA-A----G-TG-AGCTATTCTG---AT--CAAAATTTGTC-CATTATCTGTCGTC------GTTG---TTGTTGTTGTAAAC-TTTTCAC-A-TTTTC--ATCTT--GTTCT------CCAGAACCAG-TGGGCC--AAATTCAAACAAAACTTGGT----ACA---AATCA-TCTTTAA-GT-A-AGTGGATTC--AA-T--TTTTTTCAAATG---A-A-GAACCTGAGCCCCTTAAAAGGGGATATAATCACGAAAATGCAAAAATAGGGTGGTGTCATTTAAAAA---TCTTCTCAAGAACCACTGGGCCAGAAAAG------AAT---TTCT-AT-GAAAGCTT-CTTG--ATAT-TGTGGAGATT--CAA-GTTTG--TTCTAATCAT------G-A-CCCCC----------------------GGGGGTACGGTGGGGCCAC-AA-TAGGGGATCAAAGTTTTACAT-GTG-AA--TATATAGGGGAACTCTTCTTG--------------TGAAGAAC-CACTGGGTCAGAAAAGCTGAAA--TTCATA-AGAAAGCTT-CTTG-ATA-TAGTGGAGATTC--AA---GTT-TGTTCAAATCA------TG-ACCACCG-----------------------AGAATACGA--AGGGGCCA-C-ATTAGGGGTTAAAAGTTTTATA-T---GTGAATACATAT-GGAAAATCGTTAAAAATCTTCTTGTGAAGAACCAC--TGGGCTAGAATAGCTGAA-ATTTATATGAAAGCTT-CCTGATATAG-T-GGAGATT-C-AAGT-TTGTTT-AAATCATGACTCCCGGGAGTAC---GGTGGGGCCA--CAATAG-GGGA---TCAAAGTT--TTACACGTGTATATA-AGAAAAATCTT-------------------TCAAGAACCACTGGGGCAGAAAAACTG----AAATTT---ATA-TGGAAGATTCCTGATG-TAG-TGGAAAG--------------TT--GGTCAAAT---CAT-GATCCCGG-GGGT--AC-GATGG-GGCCACAA-CA-GGGATCAAAGTTTTACATGTGTATAT-ATGATGTGTATATATCGGG--AGAATCTTTTTAAAAAATCT-------------CAAG--AACTA--TTGGAC-CAGAAGAAAC---AATATCT-AACCTAAAATA--TT-CTTGATATA--GAGTA-GATT--CAAGTTT--GGTCAGATCATGACCCTC
gi|11 : gaTTGTTTAGCTCACC--TGAAAC----ATTTACAAAGCTCAC-----G-TG-ATCTCCTC---TGAT--CAGTATTTTTC------TCTGTCGTC------ATT-------TC--A--AAAC--TATCAT-G-TTT-----T--T--CCTTTA-----AAAAA-TCAC-TGA-TC--atcccggttgaagggtgatgct
gi|4 : TTTTTA-CTGAACAATGAGCC----A-----AAGACTCA-G----G-TGTAACTGTTCTGATCAA--CAAAATCAA-C-GCT----TGTCG--------GTCG---TGATCTTA--GAACGTTGTCAC-A-TT------T--T--CTTCTGCGCTCCGAGA-CCAT-TGG-CCAAAAATT-AACAAAAC--TGGTAAAGACA---AATTT-CGTT-GGAGTGATCGGGATTTC--AA-CGGTTGT--TTAAAGTGAATGCGGGCCAG-
gi|18 : TTTTTAGCTTACT--TGAGCT----A-----AAAACTCA-A----G-TG-AGCTTTTC---TGAT--CACCTTTTGTC------TCTGT
gi|19 : gaagaaaggtttgatcaTTTAGCTCACA--AGAGCT----G-----AAGGCTTAAA----T-CC-AGCTTTTC---TGAT--CAAAGTGTGTC-
gi|20 : ttttatgaaTTAACTCACC--TGAGCC----A-----AAGGCTttctatttg
gi|13 : tttgtatcaatgtaTAGCTCAAT--AGAGTG----A-----AAGGGT--TA----GATG-AGCTTTC----TGAT--TAAA--------------CTGTCTTC------GTTG---T---------AAATGTTT-CAC-ATTTTCATTGT--T--CTTTT------CCAGA-tcaatgagc
gi|16 : ttgcCTCACC--TGAGTCTTCTG-----A----TCAGAATTTG-TG--CCTTGTTTGTTGGTGTCAACA---GT--GTTG-TCAGTGG-C------ATCA---TTGACGTA--AA-C-TTTTCACAA-TTTCA--actaa
gi|15 : CTCACC--TGAGTCTTCTG-----A----TCAGAATTTG-TG--CCTTGTTTGTTGGTGTCAACA---GT--GTTG-TCAGTGG-C------ATCA---TTGACGTA--AA-C-TTTTCACAA-TTTCA--tct
gi|17 : GATCC----A-----AAAGCTCA-A----G-TG-AACTAT-CTATT-----TGAAATTTATCAGTTG-TCT-TCGTCCTTCTTGTCGCTTTTGTCGTA--AAtct
gi|7 : TGCTGGT--CAAAATTCGTC-CCTCGTCCATTATCAGT---GTCA---TTATTGTA--A----------------TAA--AT--AGACTTCT------CGAGAATCACATGG-TC--AATTCTAACC-AACTTC-CT----ACAAAGCATCA---TT-GG-GTAC-AGGGTATTCAAAA-T--TTGT--CCAAAGG--A-G-AGACCAT-GTCTcttt
gi|8 : t----ACA---AATCATCCTT-GA-TTGA-AGGGGACTC--AAAT--GTGTT-CAAATG---A-A-GGACTTT-GCTCTATCAAAGGAGAGATAATCACGAAAATACAAAAACAGG--GTGGTATC------AT----TTCTCAAG-A--AC--------CAAAGCT-GAAATT---T--GTATGAAAGA-TA-CCTGA
gi|3 : TTTAAAA-TCCTCTTCTCAAG-AAACCTGAA-C--CAAAAAAAAAAAATATTT--A-TCTGAAAGCTT-CCTG---TATG-GAGTATATT--TAAG-TTTGGGTTCAGATCACCCTCCCGCACCCCCCCCAATATGACCCATTTTTTACAAGGGTTAGGGTGGGGCCACAAG-TATGGAATAAAGGTTTTACATAACGAAATATATATAGGGAAAATTTT
gi|10 : GGCTTACCTGA--TATA-GTGGAGATTTTCAAG-TTTG--TTCAAATCAT------G-A-CCGCT----------------------GGAGATAGGGCGGAGACA--AACTATTGGATCAAA-TTTTACAT-TCA-AA--TATAT
gi|21 : GATT--CAAG-TTTG--TCAAAATCAT------G-ACTCCT-------------------------GGGTAtgattgattgttt
gi|3 : TTTAAAATCCTCTTCTC--AAGAA-AC-CTGAACCAAAAAA-AAAAAATATTTAT-CTGAAAGCTT-CCTGTATG---GAGTATATTT--AA-GT-TTGGGTTCAGATCACCCTCCCGCACCCCCCCCAATATGACCCATTTTTTACAAGGGTTAGGGT--GGGGCCA-CAAGTATGGAATAAAGGTTTTACA-TAACGAA-ATATATATAGGGAAAATTTTtagggtaag
gi|10 : GCTTACCTG-ATAT-AGTGGAGATTTTCAA---GTT-TGTTCAAATCA------TG-ACCGCTG-----------------------GAGATAGGGC-GGAGACAAACTATT--GGATCAAA--TTTTACATT---CAA-ATATAT
gi|3 : gTTTAAAA-TCCTCTTCTCAAGAA--ACC-TGAACCAAAAAAAAAAAATATTTATCTGAAAGCTT-CCTGtgattgattgttt
gi|8 : TTCTCAAGAACCA-------------AAGCTGAA-ATTTGTATGAAAGATA-CCTGAtatggagtatatttaagtttgggttcagatcaccctcccgcaccccccccaatatgacccattttttacaagggttagggtggggccacaagtatggaataaaggttttacataacgaaatatatatagggaaaatttt
gi|10 : acaaatcatccttgattgaaggggactcaaatgtgttcaaatgaaggactttgctctatcaaaggagagataatcacgaaaatacaaaaacagggtggtatcatGCTTACCTGAT--ATAGTGGAGATTTTCAAGT-TTGTTCAAA-TCATGA--CC
gi|21 : gAAGT-TTGT-CAAAATCATGA--CTCCTGGGTA-TAGGGT-gctggagatagggcggagacaaactattggatcaaattttacattcaaatatattgattgattgttt
gi|2 : gattcTTTAAAAAT--------CTTCTCAAGAACCACTGGGCCAG--AAA------AGAATTTCTA----TGAAAGCTTCTTGATATTG--TGGA--GAT------TCAAGTTT--GTTCTAAT---CATGACCCCCGG-GGGT--AC-GGTGG-GGCCACAA-TAGGGGATCAAA-------GT-TTTACAT-GTGAA---TATATAGGGG----AACTCTT--------------CTT---GTG---AAG--AACCACT--GGG-TCAGAA-AAGCT-GAAA--TTCA-TAAGAAA--GCTT-CTTGATATAGTGGA---GATT--CAAGTTT--GTTCAAATCATGACCACCGAGAATACGAAG--GGGCCACATT---AGGGGTTAA---AAGTT---------TTATATGTGAATACATATGGAAAAT--CGT-TAAAAATCTT-CT-TGTGAAGA-ACCACTGGG-CTAGAATAGCTGAAA--TTTATATGAAAGC---TT--CCTGA-TATAGT-GGAGATT-CAA-GTTTGTTT---AAATCATGACTCCCG-GGAGTACGGT------GGGGC---------CACA-ATAGGGGATC-AAAGTTTTACAC-GTG-----TATATA-AGAAAAA----------------TCTTTCAAGAACCACTGGGGCAGAA-AAACTGAA--ATTTATATGGAAGATT-CCTGATGTAGTGGA-------AAGTTG-G--TC-AAATCATGA-TCCCGGGGGTACGATGGG-G-CCAC-A--ACAGGGATCAAAGTTTTACATGTGTATATATGATGTGTATATATCGGGAGAATCTTTTTAAAAAA------TCTCAAGAACTA--TTG-GACCAGAAGAAA-C----A-ATATCTAACCTAAAATATTCTTGATATAGAGTAG-A---TTCAAG-TT-TGGTCAGATCATGA-CC-CTCaag
gi|3 : gaaagttttatatcaattattaactcacctgagcagaaggctcaagtgagctattctgatcaaaatttgtccattatctgtcgtcgttgttgttgttgtaaacttttcacattttcatcttgttctccagaaccagtgggccaaattcaaacaaaacttggtacaaatcatctttaagtaagtggattcaatttttttcaaatgaagaacctgagccccttaaaaggggatataatcacgaaaatgcaaaaatagggtggtgtcaTTTAAAA-----TCCT-CTTCTCAAGAAAC-CTGAACCAAAAAAA-----AAAAATATTTATC--TGAAAGCTTCCTG-TAT------GGAGTATATT---TA-AGTTTGGGTTCAGATatcccggttgaagggtgatgct
gi|2 : TCATTTAAAAA------TCTTCTC------AAG--AACCACT--GGGC-CAGAA-AAG----AA--TTTC--TATGAAA--GCTT-CTTGATATTGTGGA---GATT--CAAGTTT--GTTCTAATCATGACCCCCGGGGGTACG--GTGGGGCCACAATAG--GGGATCAA---AGTTT------TAC--ATGTG--AATATATAGGG-GAAC------------TCTT-CT-TGTGAAGA-ACCACTGGG-TCAGAAAAGCTGAAA--TTCATAAGAAAGC---TT--CTTGA-TATAGT-GGAGATT-CAA-GTTTGT-TCAAA--TCATGACCACCGAGAA-------TACGAAGGGGC---------CACA-TTAGGGG-TTAAAAGTTTTATAT-GTG--AA-TACATATGGAAAA--TCGTTAAAAATCTTCTTGTG-AAGAACCACTGGGCTAGAATAGC-TGAA--ATTTATATGAAAGCTT-CCTGATATAGTGGAGA--TTCAAGTTT-G-TTT-AAATCATGACTCCCGGGAGTACGGTGGG-G-CCACAA--TAGGGGATCAAAGTTTTACACGT-------G------TAT--ATA-AG------------AAAAATCTT----TCAAGAACCA--CTGGGGC---AGAAAAACT-GAA-ATTTATA---TGGAAGATTCCTGATGTAGTGGA---------AAG--T-TGGTCAAATCATGA-TC-CCGGGGGTACGATGGGGCCACAAC--AGGGATCAAAGTTTTACATGTGTATATATGATGTGTATATATCGGGAGAATCTTTTTAAAAAATC-----TCAAGAACTA---TTGGACCAGAAGAAACAATAT-CTAACC-TAAAATATTCTTGA-TATAGA-GTAGATTCAAGTT--TGGTCAGATCcaccctcccgcaccccccccaatatgacccattttttacaagggttagggtggggccacaagtatggaataaaggttttacataacgaaatatatatagggaaaatttt
gi|3 : gaaagttttatatcaattattaactcacctgagcagaaggctcaagtgagctattctgatcaaaatttgtccattatctgtcgtcgttgttgttgttgtaaacttttcacattttcatcttgttctccagaaccagtgggccaaattcaaacaaaacttggtacaaatcatctttaagtaagtggattcaatttttttcaaatgaagaacctgagccccttaaaaggggatataatcacgaaaatgcaaaaatagggtggtgTGAAA--GCTT-CCTGT-ATGG--AGTAT-ATT--TAAGTTTGGGTTCAGATCAtgaccctcatcccggttgaagggtgatgct
gi|10 : tttaaaatcctcttctcaagaaacctgaaccaaaaaaaaaaaatatttatcGGCTTACCTGATATAGTGGA---GATTTTCAAGTTT--GTTCAAATCATGACCGCTGGccctcccgcaccccccccaatatgacccattttttacaagggttagggtggggccacaagtatggaataaaggttttacataacgaaatatatatagggaaaatttt
gi|21 : GATT--CAAGTTT--GTCAAAATCATGACTCCTGGGTA-agatagggcggagacaaactattggatcaaattttacattcaaatatattgattgattgttt
gi|3 : GTGGGGCCACAAGTAT-GGAAT-AA---AGGTTTTA-CATAACGAAAT---A-TATATAGGGAAAATtagggtaag
gi|10 : tttaaaatcctcttctcaagaaacctgaaccaaaaaaaaaaaatatttatctgaaagcttcctgtatggagtatatttaagtttgggttcagatcaccctcccgcaccccccccaatatgacccattttttacaagggttaggGGCTTACCT--GATATAGT-GGAGATTTTCAAGTTTGT-TCAAA--TCATGACCGCT--GGAG----------ATAGGGCGGAGACAAAC-TA-TT---GGATC--AAATTTTACAT-TCA--AA-TATATttt
gi|3 : GGTTAGGGTGGGGC---------CACAAGTATGGAATA-AAGGTTTTACATAACGAAATATATATA-GGGAAAAtgattgattgttt
gi|3 : tttaaaatcctcttctcaagaaacctgaaccaaaaaaaaaaaatatttatctgaaagcttcctgtatggagtatatttaagtttgggttcagatcaccctcccgcaccccccccaatatgacccattttttacaag-TTTAAAATCCTCTTCT-CAAGAAAC-CTGAACCAAAA-AAA-AAAAATATTTATCTGAAAGCTT-CCTG-TATGGAGTATA--TTTAAGTTTGGGTTC-AGATCA-CCCTCCCGtttt
gi|10 : GCTTACCTGATATAGTGGAGATTTTCAAGTTT-G-TTC-AAATCATGACCGCTGGAGATAGGGC-GGAG-ACAA-AC-TATTGGATCAAA-TTTTACATcaccccccccaatatgacccattttttacaagggttagggtggggccacaagtatggaataaaggttttacataacgaaatatatatagggaaaatttt
gi|21 : gGA--TTCAAGTTT-G--TCAAAATCATGACTCCTGGGtcaaatatattgattgattgttt
gi|3 : GGGTTAGGGT-GG-GGCCAC-AAGTATGGAATAAAGGTTTTACATAA-----CGAAATA--TAT--ATAGGGAAAATTTTtatagggtaag
gi|3 : tttaaaatcctcttctcaagaaacctgaaccaaaaaaaaaaaatatttatctgaaagcttcctgtatggagtatatttaagtttgggttcagatcaccctcccgcaccccccccaatatgacccattttttacaaTTT---AAAA-TCCTCTTCTCAAGAA---ACCTGAACC--AAAAAAAA--AAAATATTTATC---TGAAAGCTTCCT-GTA---TGGAGTAT-ATTTAAGTTTGGGTTCAGATCA
gi|10 : -ATATAGTGGAG-ATT-TTCAAGTTT--GTTCAAATCATGA-CCGCTGGAGATAGGGC-GGAGACAAACTATTGGATCAAAT-TTTACATTCAAATATATT-------------GATTGATTGTTT---ccctcccgcaccccccccaatatgacccattttttacaagggttagggtggggccacaagtatggaataaaggttttacataacgaaatatatatagggaaaatttt
gi|21 : ggcttacctgGATTCAAGTTT--GTCAAAATCATGACTC-CT--GGGTAT
gi|3 : TTT---AAAATCCTCTTCTCAAG----AAACCTGAACCAAAA-AAAAAAAATATTTATCTGAAAGC-TTCCTG--TAT-GGAGTATATTTAAGTTTGGGTTCAGATCagggtaag
6 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|5 ): CTTGCATGATGGTTTAGTATCAACTCAGGCTCTAAACTTAACAGTGAGCTTTTCTGATCAAAACTATATTGTCCAGCCATCTGTTGTTGGCAACCTTGTCATCGATTAAACATTTAGCACTTTCACCTTATCCTAGATAAGCAGTGGCTGCTAATTATTATCATTCTCAAAAAATGCACAAATATCATTA
Unaligned ( gi|6 ): TGTATGTAGATCAAATTTGGTTCACATGATGACCACCAGAGCCACTAGTGTTAAATGTTGCACGTAAATACTGGACAATTCTATCAAAATCTCGCAGAACCACAGGGGTATATTTTGTAAAATATGCCAGCATTCTTAAGTATTGTAGATTAAAGTTGTTCTCACCATGGCCC
Unaligned ( gi|9 ): ATTCACATTACCTGAGCCTTTACAGATCACCGTGAGCCCTTATCTAAATCACCTTTGGATTGTCAATCTGGTCAATGTTGTCTGACAATTTTGTCTGTAAATTTCACATTTCTCATCTTGTTCTCCCAAACCACTGACACTAAA
Unaligned ( gi|12 ): ATTGTTAATTCATCTGAGATTAAAGCTGAAGTGAATTTTTTCAGATCAAAGTTGTGTATACATGTACTCTCTGATTCTTGTTGTTGTTGTCATTAACTT
Unaligned ( gi|14 ): TTGTTAATTCATCTGAGATTAAAGCTGAAGTGAATTTTTCAGATCAAAGTTGTGTATACATGTACTCTCTGATTCTTGTTGTTGTTGTCATTAACTTT
Unaligned ( gi|22 ): TGCAAAAGTAGGGTGGGGTCATTTAAAAATATCAAGAAC
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111111111111 1111111111111111111 111111111111111111111111111111111 11111111111111111111 1111111111111111111111111111111111111 33333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333
lowQualScore : 1 111111 22222 55555555555555555555555 222222222222222222222222222222 44444444 111111 11 1 1111 22222 111 111 44444 22222222222222 333333 4444444 11 33 2 1 1 1 1 2 666666666666666 2 111 44 22 44 333 2 22 1 55555 2 4 22 2 1 22 3333 333 1 1 2222222 22 11 33333333 22222 1 7777777777777777777 4444444444444444444444444444444444444444444444444444444444444444444444444444 222 2 22222 2 2222 2222 1 33333 2222 1 22 2 6666666666666666666 22 22 2 2 77777777777777777777777777 1 22222 4 1 1 444444444444444444444444444444444 777777777 555555555555555 4 33 55 11111111111111111111 444 77777 1 777777777777777 4 4 11 1 4 2 2 1 22 1 1 33 2222222222222222222222222222222222222 1 22 1 2 2 55 666 1 11 55 33 1 33 1 2 22222222 33 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 66666
lowQualScore : 4 3 2 0 5 0 66 222222 3 3 3 99999 55 0 44444444444444444444444 7777 888888888888888888888888888888 4 99 4 77 55 11111111 666666 1 77 8 33 6 3 0 2 2 7777 8 8 8 8 3 8 44444 0 8 1 1 777 222 1 1 1 2 2 22 22 3 00000 77777777777777 777777 3333333 0 88 00 4 0 4 5 5 6 5 5 1 0 1 111111111111111 2 3 777 33 44 77 4 3 555 0 11 0 2 44444 0 0 55 0 5 1 2 6 2 2 77 4 0000 88 888 3 3 7 7 8888888 6 22 88 7 00000000 00000 3 7 8888888888888888888 7 6 5555555555555555555555555555555555555555555555555555555555555555555555555555 333 6 1 0 88888 6 0 3 4444 4444 6 5 1 11111 1111 5 22 77 1 0 8888888888888888888 77 77 0 0 55555555555555555555555555 5 4 77777 3 1 0 7 5 999999999999999999999999999999999 6 999999999 888888888888888 0 6 1 00 55 6 1 6 11111111111111111111 555 66666 5 999999999999999 0 1 0 22 7 0 0 0 1 2 5 4 77 3 2 5 7 2 11 7777777777777777777777777777777777777 3 3 1 5 77 1 2 1 77 3 0 6 55 111 5 1 22 6 55 00 2 5 11 5 0 2 1 44444444 22 66 1 77 44444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 1 6 22222 1 6
lowQualScore : . . . . . . .. ...... . . . ..... .. . ....................... .... .............................. . .. . .. .. ........ ...... . .. . .. . . . . . .... . . . . . . ..... . . . . ... ... . . . . . .. .. . ..... .............. ...... ....... . .. .. . . . . . . . . . . . ............... . . ... .. .. .. . . ... . .. . . ..... . . .. . . . . . . . .. . .... .. ... . . . . ....... . .. .. . ........ ..... . . ................... . . ............................................................................ ... . . . ..... . . . .... .... . . . ..... .... . .. .. . . ................... .. .. . . .......................... . . ..... . . . . . ................................. . ......... ............... . . . .. .. . . . .................... ... ..... . ............... . . . .. . . . . . . . . .. . . . . . .. ..................................... . . . . .. . . . .. . . . .. ... . . .. . .. .. . . .. . . . . ........ .. .. . .. ..................................................................................................... . . ..... . .
lowQualScore : 0 2 5 8 0 9 11 111111 6 6 6 11111 00 5 22222222222222222222222 7777 222222222222222222222222222222 4 11 4 99 99 00000000 444444 7 77 0 88 5 2 5 0 5 0000 0 0 0 0 2 0 00000 8 0 0 0 555 000 0 0 0 0 5 00 00 2 88888 11111111111111 000000 0000000 7 33 55 0 0 0 0 0 0 0 0 0 0 0 000000000000000 5 0 000 00 00 55 0 0 000 0 55 5 5 00000 0 0 55 0 5 0 5 0 5 5 55 0 0000 33 000 3 3 3 3 3333333 7 33 33 3 77777777 33333 3 7 7777777777777777777 3 7 0000000000000000000000000000000000000000000000000000000000000000000000000000 333 7 0 0 55555 0 0 0 0000 0000 0 0 0 00000 5555 5 00 55 0 0 5555555555555555555 55 55 0 0 00000000000000000000000000 5 0 55555 0 0 0 0 0 000000000000000000000000000000000 0 000000000 000000000000000 0 0 0 00 00 0 0 0 00000000000000000000 000 00000 0 000000000000000 0 0 0 00 0 0 0 0 0 5 5 0 55 0 5 5 0 5 77 0000000000000000000000000000000000000 7 7 0 0 55 0 5 5 00 0 0 0 00 000 0 0 00 0 00 00 5 0 55 5 0 5 0 55555555 00 00 0 00 00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 0 0 00000 0 0
consensus : AAGNTTTGTATCAATTT-TTAGCTCACC--TGAGCCG-----AAGGCTCA-AGT-G-AGCTTTTCTGT-GATCAA--AATT---------TGTC-GTT------TCTG----TCGTC------G------TCG---TTGTCG-TA--A-AAC-TTT-T--CACA-TTTCA---T--TCTTCT------CGAGAACCAC-TGG-CC--AAATTCAACCAAACTTTGGT----ACAAATCA-CC-TT-GG-GTGAAGGGGA-TTCAAA-T--TTGTT-CAAATG---AGGGACCNN-GCCCCATCAAAGGGGAGATAATCACGAAAATGCAAAAATAGGGTGGTGTCATTTAAAAA--T-CTTCTCAAGA--AC---TGGGC--CAAA---G--GAAAATT-T--AT-GAAAGCTTCCTG--ATATNCGNGGAGATTCAAGGTTTGTTCNAATCATGACCCCCCGGGGGTACGGTGGGGCCACAATAGGGGATCAAAGTTTTACATGCGGATTATATAGGGGAANTCTTCTTGAAAATCTTCTTCTCTNAAGAACGCACTGGGCCAGGAAAGCTGAAAT-TTCATATNGAAAGCTTCCTGATGTTAGNGGAGATNCAAAGTGTTGTGTTCAAATCATGACCNCCCGGGGTACCGNTGGGGGCCACAATTAGGGGTCAAAAGTTTTACATGTGGATACATATAGGGAAATCNTTAAAAATCTTCTTNTNAAGAACCACTATGGGCCAGGANAGCTGAAATTTATATGAAAGCTTCCTGATATAGAGTGGAGATT--CAAGT-TTG-TTCAAAATCATGACCC--GGG-ACTACGGT-GGGCCA--CAATAG-GGGA---TCAAAGTT--TTACACGTGTATATA-AGANAAATCT-TCAAAA----------CCTCTCAAGAACCACTGGGGCAGA------AAAACT----GAAATTT----TA-TGNAAGC-TTCCTGA-TATT--GTGGGAAGAT------T--A--G-TTGTTCAAAT---CATGGACCCCGGAGGGTGGACTGATGGTGGCCNCAAGCAGGGGATCAAGGTTTTGCATGTNTATATCATGATGTGTATATANNGGGTAAGAATCTTTTTAAAAAGNTCTTTCTTCACGTACACAAGCTAACCACTTTGGGCTCAGGAGAAGCTTGAAGGTNTNTAAGCNTGGAACGNNTTCCTGATATAGNGGGTACGATTCAAGTTTGNTCAGATCATGACCCCCGGGTA-ACGTAGTGGGGCCCCAATGACAGGAATCAATTGAGGTTAGCATACTGATAT-AATATATAGGGAGAATATCTTACAAAAATCTTTCTATTTCAAGATACCACTGGGGCCAGGAAATGTGAAAATTTTATATGGAAGCGGGTTGCCTTGAATATAGAAGGAGATTACCAGTTTGTGTCAAAAATCATGACCCCCGAGGAGCTCGGTTACTATGGGGCC-CATTAGGGGATCCAAAGTTTTACATATGATTATATAGGAAAAAATCTTAAAAATCCTCTTTCTCAAGAANCACTGGGCCAGAAAGANGAAATATTTATNTNGGAGCTTCCTGATATGGAGNAGATTCAAGTTTGG-TTCAAATC----------------------ATGACCC--------CCGGGGNTAGGGTGGGGCCACAAGTANGGGATNAAGGTTTTACATGNCGGAATATATCATAGGGAAAATCTTTAAAAATCTTCTTCTCAAGAACCGCCCTGCGGCGAGGAAAGCTGGAAATTTATATGAAATCTTCNTGATATAGTGGAGATGNTTCAAGTTTTGTTCAAATCATGACCGCTNGGGGTANGGCGGAGCNCNAACTANNGGATCAAAGTTTTACATNCAGATATATA-------------GAGAAATTCTTTAAAAATCT-TTTTCGAGA-------TTGAACCAGGA-AGATTATGT-TTTACC--GAAG-ACTTCTGAC-TATGCGTAGATTTAAGGT--GGTTCAGATTA
Reference ( family-85 ) : AAGTTTTATATCANTTT-TTAGCTCACC--TGAGCCG-----AAGGCTCA-AGT-G-AGCTTTTCTGT-GATCAA--AATT---------TGTC-GTT------TCTG----TCGTC------G------TCG---TTGTCG-TA--A-AAC-TTT-T--CACA-TTTCA--AT--TCTTCT------CGAGAACCAC-TGG-CC--AAATTCAACCAAACCTCGGT----ACAAATCA-CC-TT-GG-GTGAAGGGGA-TTCAA--T--TTGTT-CNAANG---AGGGACCNN-GCCCCNTNAAAGGGGANATAATCACGAAAATGCAAAAACAGGGTGNNGTNNTTTAAAAA--TTCTTCTCAAGA--AC---TGGGC--CAAA---G--GAAAATT-N--AC-GAAGGCTTCCTG--ATATG-GTGGAGATTCAA-GTTTGTTCAAATCATGACCCCCCGGGGGTAGGGCGGGGCCACAATATGGGATCAAAGTTTTACATNCGAA-TATATAGGGGAANTCTTCTTNAAAATCCTCTTCTCTGAAGAACACACTGGGCCAGAAAAGNNGAAATATTCATACNGAAAGCTTCCTGATA--AGTGGAGATTTAA---GTT-TGTTCAAATCACGACCGCCGGGGATA-GGGCGGGGGCCAC-ATTA-GGATTAAAGGTTTTACATG-AAATATATATAGGGAAANCGTTAAAAATCCTCTTCTCAAGAACCAC--TGGGCCAGAAAAGCTGAAATTTATATGAAAGCTTCCTGATATANANTGGAGATTTCCAAGT-TTG-TTCAAAATCATGACCCNNGGGTACTAGGGTGGGGCCA--CAATAG-GGGA---TCAAAGTT--TTACACGTGTATATA-AGAAAAATCT-TTAAAA----------CTTCTCAAGAACCACTGGGCCAGA------AAAA------AAAATTTC---TACTGAAAGC-TTCCTGA-TATT--GTGGAAGGAT------T--A--GTTTGTTCAAAT---CATGGNCCCCGG-GGGT--AC-GGTGG-GGCCACAA-CAGGGGATCAAAGTTTTACGTGTNTACAT-GTGANGTGTATATANNGGG--AGANTC-TTTTAAAA----CT-------------TAAG--AACCAC--TGGGC-CAGAA-AAGC---AA--TTTC--A-TATGAAA--GCTTCTTGATATAGTGGATA-GATTCAAGTTTGTTCAAATCATGACCCCCGGGNATACGAAGTGGGGCCACAATG---GGGATCAA---AGGTT----TAC--ATATGAATATATAGGGAAA--ATCGT-TAAAAATC-TTCT-TGTGAAGA-ACCACT-GGGCCAGAANAGCTGAAA--TTCATANGAAAGC---TT--CTTG-ATATAG-TGGAGATT-CAAGTTTGT-TC--AAATCATGACCGCCG-GGAG---GGTTA-GATGGGGCCACANTAGGGGAT-CAAAGTTTTACATGCGAATATATAGG-AAAAATCTT-AAAATCCTC-TTNTCAAGAACCACTGGGCCAGAAAAATGAAAT--TTATATGAAAGCTTCCTGATATAGTGGAGATTCAAGTTTG--TTCAAATC----------------------ATGACTC--------CCGGGGGTANGGTGGGGCCACA--TANGGGATCAAAGTTTTACATGTCGNGATGTAT-ATAGGGAGAATCTTTAAAAATC--CTTCTCAAGAACCA--CTGGGNCGAAAAAAAC--GAAATTTATATGAAAGATTCCTGATATAGTGGAGAT-ATTCAAGTTTTGTTCAAATCATGACC-CTGGGGGTANGGCGGGGNNNNAACTANNGGATCAAANTTTTACATNCGNATATATNATGTGTATATATCGGNNGANTNTTTAAAANCCTCTTCTCAAGAACTAAACCTGGACCAGAAGAAANAANATACTNACCTNAAAGCATTCCTGATATAGGAGTANATTCAAGTTTGNGNTCAGATCA
gi|1 : AAACTTCATAT-ATTTT-TTAGCTCACC--TGAGCCG-----AAGGCTCATAGT-G-ATCTTTTCTGTTGATCAA--AATT---------TGTC-GTTGG----TCTG----TCGTC------G------TCG---TTGTCG-TA--A-AACGTTT-T--CACA-TTTCA--AT--TCTTCT------CAAG-ACCAC-TGG-TC--AAATTCAACCAAACTTTGGT----ACACATCA-CC-TT-GG-GTGAAGGGGC-TTCAA--T--TTG-T-CAAATGGGAAGGGACCAG-GCCTCACCAAAGGGGAGATAATCATGAAAATGCAAAAATAGG--GGTGTATTTTAAAAATCTTCTTCTCAAGACCAC---TGGGCAGCAAAGCTG--GAAAATT-A--ATGGAAGGCTTCCTGAAATATACGAGGAGATTCAAGGTTTGTTCAAATCATGACCCCCCGGGGGTACGATGGGGCCA-AATAGGGGATCAAAGTTTTACATACGGATTATATAGGAGAAATCTTCTTAAAAATCTTCTTCTCTCAAGAACGCACTAGGCCAGGAAA-CTGAAAT-TTTATATTGAAAGCTTCCTGATGTTAGAGGAGATGTAAAGTGTTGTGTTCAAATC-TGACCCCCCGGGGTACGATTGGAGGCCACAATTAGGGATCAAA--TTTTACATG-AGATATATATAGGGAAATCTTTAAAAATCTTCTTCTCAAGAACCACTATGGGCCAGGAAAGCTGAAATTTATATGAAAGCTTCCTGAT-TAGAG-GGAGATTACAAAGTGTTG-TTCAAAATCATGACCCGGGGGTACTATGGT-GGGCCATTCAATAGTGGGAAGGTCCAAATTGGGTACATGAGTATATAGAGATAAATCT-TTAAAAATGCTTCTTTCTTCTCAAGAACCACTGGGCCAGG------TAAACTGCTGAAAATTTTTAATAGTGAAAGC-GTTCTGA-TATTAGATGGGAGGATAGTGCAT--AGGGTTTGTTCAAATGTGCATGGACGCCGGAGGGTGGACTGATGGTGGCCCCAAGTAGGGGATCAAG----TGCAT-TTTA-ATCATGAT---TAT-TAGAGGGTAAAAATC-TTTTAAAAAGATCTTTCTTCACGTACATAAGCTAACCACTTTGGGCTCAGGA-AAGCTTGAAGGTTTG--AGTATGGAACGGCTTCCTGA-ATAGTGGGTACGATTCAAGTTTGTTCAAATCATGACCCCCGGGTA-ACGTAGTGGGGCCCCAATGACAGGAATCAATTGAGGTTAGCATACTGATAT-AATATATAGGGAGAATATCTTACAAAAATCTTTCTATTTCAAGATACCACTGGGGCCAGGAAATGTGAAAATTTTATATGGAAGCGGGTTGCCTTGAATATAGAAGGAGATTACCAGTTTGTGTCAAAAATCATGACCCCCGAGGAGCTCGGTTACTATGGGGCC-CATTAGGGGATCCAAAGTTTTACATATGATTATATAGGAAAAAATCTTAAAAATCTTCTTTTTCAAGAACCACTGGGCCAGAAAGATGAAAT--TTATATTGGAGCTTCCTGATATAGAGGAGATTCAAGTTTGA-TTCAAATC----------------------A-GACCC--------CCGGGGGTATGAT-GGGCCACA--TAGGGGATCAAAGTTTTACATGCCAGAAT-TATCATAGAGAAAATCTTTAAAAATCTTCTTCTCAAGAACCGCCCTGCGGCGAGGAAAGCTGGAAATTTATATGAAATCTTCGT-ATATAGTGGAGATGGTTCAAGTTTTGTTCAAATCATGATC-CTCGGGGTATGAT-GAGCCCCAATTAGGGGATCAAAG-TTTACATGCAGATATATA-------------GAGAAATTCTTTAAAAATCT-TTTTCGAGA-------TTGAACCAGGA-AGATTATGT-TTTACC--GAAG-ACTTCTGAC-TATGCGTAGATTTAAGGT--GGTTCAGATT
gi|10 : CCTGATATAGTGGAGAT-TTTCAAGTTT-GTTCAAATCATGACCGCTGGAGATAGGGCGGAG-ACAAACTATTGGATCAAA-TTTTACATTCAAATATATaatgcctccaccga
gi|11 : ggcttaT-TTAGCTCACC--TGAAACATTTACAAAGCTCA-CGT-G-ATCTCCTC--T-GATCAG--TATT---------TTTC----------TCTG----TCGTC------A------TT-------TC---A--A-AAC--TA-T--CATG-TTT-----T--TCCTTT------AAAAAATCAC-TGtgattgattgttt
gi|13 : ttgTAGCTCAAT--AGAGTGA-----AAGGGTTA-GAT-G-AGCTTTC---T-GATTAA--A---------------------------CTG----TCTTC------G------TTG---T----------A-AAT-GTT-T--CACATTTTCATTGT--TCTTTT------CCAGAACTAatc
gi|14 : ttgcTTG-TTAATTCATC--TGAGATT-----AAAGCTGA-AGT-G-AATTTTTCAG---ATCAA--AGTTGTGTATACATGTA-CTC------TCTGATTCTTGTT------G------TTG---TTGTCA-T---T-AAC-TTT-a
gi|17 : GATCCA-----AAAGCTCA-AGT-G-AAC-TATCTAT---TTGA--AATT---------TATCAGTTG-----TCT-----TCGTCCTTCTTG------TCGCTTTTGTCG-T---A-AAC-TTT-
gi|18 : AAGGTTTG-ATCA-TTT-TTAGCTTACT--TGAGCTA-----AAAACTCA-AGT-G-AGCTTTTC--T-GATCAC--CTTT---------TGTC----------TCTG----T
gi|19 : gaagaT-TTAGCTCACA--AGAGCTG-----AAGGCTTA-AATCC-AGCTTTTC--T-GATCAA--AGTG---------TGTC---T------TCTA----T
gi|2 : ttttatgaaAAGTTTTATATCAATTA-TTAACTCACC--TGAGCAG-----AAGGCTCA-AGT-G-AGCTATTCTG---ATCAA--AATT---------TGTCCATTA-----TCTG----TCGTC------G------TTG---TTGTTG-TTGTA-AAC-TTT-T--CACA-TTTTC--ATCTTGTTCT------CCAGAACCAG-TGGGCC--AAATTCAAACAAAACTTGGT----ACAAATCA-TC-TTTAA-GT-AAGTGGA-TTCAA--T--TTTTTTCAAATG---AAGAACCTGAGCCCCTTAAAAGGGGATATAATCACGAAAATGCAAAAATAGGGTGGTGTCATTTAAAAA--T-CTTCTCAAGA--ACCACTGGGC--CAGA---A--AAGAATT-TCTAT-GAAAGCTTCTTG--ATATT-GTGGAGATTCAA-GTTTGTTCTAATCATGACCCCC-GGGGGTACGGTGGGGCCACAATAGGGGATCAAAGTTTTACATGTGAA-TATATAGGGGAACTCTTCTTG--------------TGAAGAAC-CACTGGGTCAGAAAAGCTGAAAT--TCATA-AGAAAGCTTCTTGATAT-AGTGGAGATTCAA---GTT-TGTTCAAATCATGACCACCGAGAATA-CGA-AGGGGCCAC-ATTAGGGGTTAAAAGTTTTATATGTGAATACATAT-GGAAAATCGTTAAAAATCTTCTTGTGAAGAACCAC--TGGGCTAGAATAGCTGAAATTTATATGAAAGCTTCCTGATAT--AGTGGAGATT--CAAGT-TTG-TTT-AAATCATGACTCCCGGG-AGTACGGTGGGGCCA--CAATAG-GGGA---TCAAAGTT--TTACACGTGTATATA-AGAAAAATCT-T-------------------TCAAGAACCACTGGGGCAGA------AAAACT----GAAATTTA---TA-TGGAAGA-TTCCTGA-TGTA--GTGGAAAG----------------TTGGTCAAAT---CAT-GATCCCGG-GGGT--AC-GATGG-GGCCACAA-CA-GGGATCAAAGTTTTACATGTGTATAT-ATGATGTGTATATATCGGG--AGAATCTTTTTAAAAAAT-CT-------------CAAG--AACTAT--TGGAC-CAGAAGAAAC---AA--TATCTAA-CCTAAAA--TATTCTTGATATAGAG--TA-GATTCAAGTTTGGTCAGATCATGACCCTCttg
gi|20 : gaTTTGTATCAATGTATTAACTCACC--TGAGCCA-----AAGGCTTC-AAT-G-AGCatcccggttgaagggtgatgct
gi|21 : GATTCAAGTTTG--TCAAAATC----------------------ATGACTC--------CTGGGTATAGGGT
gi|22 : TGCAAAAGTAGGGTGGGGTCATTTAAAAA------TATCAAGA--AC---aag
gi|3 : TT-AAAATCCTC-TTCTCAAGAAAC-CTGAACCAAAAAAAAAAAATATTTATCTGAAAGCTTCCTG-TATGGAGTATATTTAAGTTTGGGTTCAGATCACCCTCCCGCACCCCCCCCAATATGACCCATTTTTTACAAGGGTTAGGGTGGGGCCACAAGTATGGAATAAAGGTTTTACATAACGAAATATAT-ATAGGGAAAATTTT
gi|4 : tTTT-TTA-CTGAACAATGAGCCA-----AAGACTCA-GGT-GTAACTGTTCTG---ATCAACAAAAT---------CAAC-GCT------T--G----TCG--------G------TCG---TGATCT-TA--G-AAC-GTTGT--CACA-TTT--------TCTTCTGCGCTCCGAGA-CCAT-TGG-CCAAAAATT-AACAAAAC--TGGTAAAGACAAATTT-CG-TT-GGAGTGATCGGGATTTCAA--CGGTTGTT-TAAA
gi|5 : -AGT-G-AGCTTTTC--T-GATCAA--AACTA--------TATT-GTCCAGCCATCTG----TTGTT------GGCAACCTTG---TCATCGATT--A-AAC-ATT-TAGCAC--TTTCAC-CT--TATCCT------AGATAAGCAG-TGG-Cgtgaatgcgggccag
gi|6 : cttgcatgatggtttagtatcaactcaggctctaaacttaacTGTAGAT---CAAAT-TTGGTTCACA-TGATGACC-------ACCAGAG-----CCA--C--TAG-TG-----TTAAA-TG--TTGCACGTAAATACT-GGACAATTCTATCAAAA----------TCTCGCA-GAACCACAGGGGTATATTTTGTAAAA-----------------TA-TGCCAGCATTCTTAAGTATT--GT----AGAT------TAAA--G-TTGTTCTCAC---CATGGCCCtgctaattattatcattctcaaaaaatgcacaaatatcatta
gi|7 : tgtaT-GGTCAA--AATT---------CGTC-CCTCG----TCCA----TTATCAGT---G------TCA---TTATTG-TA--ATAAA-T-------AGA-------------CTTCT------CGAGAATCACATGG-TC--AATTCTAACCAA-CTTCC-T----ACAAAGCA-TCATT-GG-GTACAGGGTA-TTCAAAAT--TTGTC-CAAAGG---AGAGACCAT-GTC
gi|8 : ttgc----ACAAATCATCC-TT-GA-TTGAAGGGGA-CTCAAA-T--GTGTT-CAAATG---AAGGACTTT-GCTCTATCAAAGGAGAGATAATCACGAAAATACAAAAACAGGGTGGTATCAT------------TTCTCAAGA--A--------C--CAAA---GCTGAAATTTGT--AT-GAAAGATACCTG--At
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|9 ): ATTCACATTACCTGAGCCTTTACAGATCACCGTGAGCCCTTATCTAAATCACCTTTGGATTGTCAATCTGGTCAATGTTGTCTGACAATTTTGTCTGTAAATTTCACATTTCTCATCTTGTTCTCCCAAACCACTGACACTAAA
Unaligned ( gi|12 ): ATTGTTAATTCATCTGAGATTAAAGCTGAAGTGAATTTTTTCAGATCAAAGTTGTGTATACATGTACTCTCTGATTCTTGTTGTTGTTGTCATTAACTT
Unaligned ( gi|15 ): CTCACCTGAGTCTTCTGATCAGAATTTGTGCCTTGTTTGTTGGTGTCAACAGTGTTGTCAGTGGCATCATTGACGTAAACTTTTCACAATTTCATCT
Unaligned ( gi|16 ): CTCACCTGAGTCTTCTGATCAGAATTTGTGCCTTGTTTGTTGGTGTCAACAGTGTTGTCAGTGGCATCATTGACGTAAACTTTTCACAATTTCATCT
Alignments
lowQualScore : 1111111111111111111111111111111111111
lowQualScore : 1111111 33333 99999999999999999999999999999999999999999999999999999999999999 1111111 222222222 111111 11 1111 11111 111 111 11 111 22222222222222 444 3333 1 11 11 1 1 1 1 55555555555555 1 1 1 11 1 222 1 1 4444 1 11 1 1 11 2222 22 1 1 1 11 2222222 22222 11 33333333 111111 1 7777777777777777777 777777777777777777777777777777 1 1 8888888888888888888888888 222 1 11 1 1 1111 2222 1 1 1 222 1 11 1 11 4444444444444 11 11 1 1 222222222222222 1111 1 111 1 1 1 11 1 111 1 2222222222222222222222222222222222222 1 11 1 1 2 1 11 1 1 1 11 33
lowQualScore : 1 22 5 3 4 1 55 2222222 2 2 2 00000 33 33333333333333333333333333333333333333333333333333333333333333 555 3333333 3 2 55 3 55 999 55 888888888 444444 3 3 5 6 33 6 3 7 2 7777 8 8 8 8 3 99999 3 8 444 222 3 3 11 777 77777777777777 111 1111 3 88 66 1 5 1 5 5 5 1 22222222222222 1 5 5 5 66 5 1 1 111 5 5 1 2 2222 5 88 5 5 1 1 1 88 1 4444 7 00 3 3 3 7 7 88 5555555 11111 88 7 00000000 999999 3 1 8888888888888888888 7 555555555555555555555555555555 1 3 3 5555555555555555555555555 333 6 5 77 5 5 1 9999 4444 5 1 5 5 000 5 22 88 5 66 9999999999999 88 88 5 5 999999999999999 1 9999 5 888 5 1 4 5 1 5 1 88 1 1 5 1 555 3 1111111111111111111111111111111111111 3 1 5 88 1 1 1 5 5 0 1 5 66 5 5 1 1 5 66 1 22 00 1 4 66 2
lowQualScore : . .. . . . . .. ....... . . . ..... .. .............................................................. ... ....... . . .. . .. ... .. ......... ...... . . . . .. . . . . .... . . . . . ..... . . ... ... . . .. ... .............. ... .... . .. .. . . . . . . . .............. . . . . .. . . . ... . . . . .... . .. . . . . . .. . .... . .. . . . . . .. ....... ..... .. . ........ ...... . . ................... . .............................. . . . ......................... ... . . .. . . . .... .... . . . . ... . .. .. . .. ............. .. .. . . ............... . .... . ... . . . . . . . .. . . . . ... . ..................................... . . . .. . . . . . . . . .. . . . . . .. . .. .. . . .. .
lowQualScore : 0 22 0 5 4 4 55 7777777 9 9 9 55555 99 88888888888888888888888888888888888888888888888888888888888888 444 4444444 1 3 44 3 55 444 55 000000000 444444 4 2 7 7 88 5 2 0 5 0000 0 0 0 0 2 00000 8 0 000 000 2 2 88 555 11111111111111 777 3333 3 33 00 0 0 0 0 0 5 0 55555555555555 0 0 0 5 55 5 0 0 000 0 5 0 5 0000 5 00 5 5 0 0 0 55 0 5555 3 77 3 3 3 3 3 33 0000000 00000 33 3 77777777 333333 3 0 0000000000000000000 3 000000000000000000000000000000 0 3 3 7777777777777777777777777 333 7 5 55 5 5 0 0000 0000 0 0 5 0 555 5 00 55 5 00 0000000000000 00 00 5 0 000000000000000 0 5555 5 555 0 0 0 5 0 5 0 55 0 0 5 0 333 3 3333333333333333333333333333333333333 7 0 0 00 0 0 0 5 0 0 0 0 00 5 0 0 0 0 00 0 00 55 0 0 55 5
consensus : AAGNTTTGTATCAATTT-TTAGCTCACC--TGAGCCG-----AAGGCTCA-AGT-G-AGCTTTTCTGT-GATCAA--AATT---------TGT--------C-GTT------TC-----TG----TCGTC------G------TCG---TTGTC-G-TA--A-AAC-TTT-T--CAC-A-TT--T-CA---T--TCTTCT------CGAGAACCAC-TGG-CC--AAATTCAACCAAACTTTGGT----ACAAATCA-CC-TT-GG-GTGAAGGGGATTCAAA-T--TTGTTCAAA-TG---AGGGACCNN-GCCCCATCAAAGGGGAGATAATCACGAAAATGCAAAAATAGGGTGGTGTCATTTAAAAATCTTCT---CAAGA--AC---TGGGC--CAAAGCT-GAAAATT-T--ATGAAAG-CTTCCTGA--TATNCGNGGAGATTCAAGGTTTGTTCNAATCATGACCCCCCGGGGGTACGGTGGGGCCACAATAGGGGATCAAAGTTTTACATGCGGATTATATAGGGGAANTCTTCTTGAAAATCTTCTTCTCTNAAGAACGCACTGGGCCAGGAAAGCTGAAATTTCATATNGAAAGCTTCCTGATGTTAGNGGAGATNCAAAGTGTTGTGTTCAAATCATGACCNCCCGGGGTACGGNTGGGGGCCACAATTAGGGGTCAAAAGTTTTACATGTGGATACATATAGGGAAATCNTTAAAAATCTTCTTNTNAAGAACCACTATGGGCCAGGANAGCTGAAATTTATATGAAAGCTTCCTGATATAGAGTGGAGATT-CAA-GT-TTG-TTCAAAATCATGA--CCCGGG---ACTACGGT-GGGCCA--CAATAG-GGGA---TCAAAGTTT--TACACGTGTATATA-AGANAAATCT-TCAAAA----------CCTCTCAAGAACCACTGGGGCAGA------AAAACTG----AAATTT-T-----ATGNAAGC-TTCCTGA-TATTG--TGGGAGGAT------T--AG---TTGTTCAAAT---CATGGACCCCGGAGGGTGGACTGATGGTGGCCNCAAGCAGGGGATCAAGGTTTTGCATGTNTATATCATGATGTGTATATANNGGGTAAGAATCTTTTTAAAAAGATCTTTCTTCACGTACACAAGCTAACCACTTTGGGCTCAGGAGAAGCTTGAAGGTNTNTAAGCNTGGAACGNNTTCCTGATATAGNGGGTACGATTCAAGTTTGNTCAGATCATGACCCCCGGGTAACGTAGTGGGGCCCCAATGACAGGAATCAATTGAGGTTAGCATACTGATATAATATATAGGGAGAATATCTTACAAAAATCTTTCTATTTCAAGATACCACTGGGGCCAGGAAATGTGAAAATTTTATATGGAAGCGGGTTGCCTTGAATATAGAAGGAGATTACCAGTTTGTGTCAAAAATCATGACCCCCGAGGAGCTCGGTTACTATGGGGCCCATTAGGGGATCCAAAGTTTTACATATGATTATATAGGAAAAAATCTTNAAAATCCTCTTTCTCAAGAANCACTGGGCCAGAAAGANGAAATATTTATNTNGGAGCTTCCTGATATGGAGNAGATTCAAGTTT-GGTTCAAA-TC----------------------ATGACCC--------CCGGGGNTAGGGTGGGGCCACAAGTANGGGATNAAGGTTTTACATGNCGGAATATATCATAGGGAAAATCTTTAAAAATCTTCTTCTCAAGAACCGCCCTGCGGCGAGGAAAGCTGGAAATTTATATGAAATCTTACNTGATATAGTGGAGATGNTTCAAGTTTTGTTCAAATCATGACCGCTNGGGGTANGGCGGAGCNCNAACTANNGGATCAAAGTTTTACATNCAGATATATNGANNGATTNTTTAAAAATCTTTTTCGAGATTGAACCAGGAAGATTATGTTTTACCGAAGACTTCTGACTATGCGTAGATTTAAGGTGGTTCAGATTA
Reference ( family-85 ) : AAGNTTTGTATCAATTT-TTAGCTCACC--TGAGCCG-----AAGGCTCA-AGT-G-AGCTTTTCTGT-GATCAA--AATT---------TGT--------C-GTT------TC-----TG----TCGTC------G------TCG---TTGTC-G-TA--A-AAC-TTT-T--CAC-A-TT--T-CA---T--TCTTCT------CGAGAACCAC-TGG-CC--AAATTCAACCAAACTTTGGT----ACAAATCA-CC-TT-GG-GTGAAGGGGATTCAAA-T--TTGTTCAAA-TG---AGGGACCNN-GCCCCATCAAAGGGGAGATAATCACGAAAATGCAAAAATAGGGTGGTGTCATTTAAAAATCTTCT---CAAGA--AC---TGGGC--CAAAG---GAAAATT-T--ATGAAAG-CTTCCTGA--TATNCGNGGAGATTCAAGGTTTGTTCNAATCATGACCCCCCGGGGGTACGGTGGGGCCACAATAGGGGATCAAAGTTTTACATGCGGATTATATAGGGGAANTCTTCTTGAAAATCTTCTTCTCTNAAGAACGCACTGGGCCAGGAAAGCTGAAATTTCATATNGAAAGCTTCCTGATGTTAGNGGAGATNCAAAGTGTTGTGTTCAAATCATGACCNCCCGGGGTACCGNTGGGGGCCACAATTAGGGGTCAAAAGTTTTACATGTGGATACATATAGGGAAATCNTTAAAAATCTTCTTNTNAAGAACCACTATGGGCCAGGANAGCTGAAATTTATATGAAAGCTTCCTGATATAGAGTGGAGATT-CAA-GT-TTG-TTCAAAATCATGA--CCCGGG---ACTACGGT-GGGCCA--CAATAG-GGGA---TCAAAGTTT--TACACGTGTATATA-AGANAAATCT-TCAAAA----------CCTCTCAAGAACCACTGGGGCAGA------AAAACTG----AAATTT-T-----ATGNAAGC-TTCCTGA-TATTG--TGGGAAGAT------T--AG---TTGTTCAAAT---CATGGACCCCGGAGGGTGGACTGATGGTGGCCNCAAGCAGGGGATCAAGGTTTTGCATGTNTATATCATGATGTGTATATANNGGGTAAGAATCTTTTTAAAAAGNTCTTTCTTCACGTACACAAGCTAACCACTTTGGGCTCAGGAGAAGCTTGAAGGTNTNTAAGCNTGGAACGNNTTCCTGATATAGNGGGTACGATTCAAGTTTGNTCAGATCATGACCCCCGGGTAACGTAGTGGGGCCCCAATGACAGGAATCAATTGAGGTTAGCATACTGATATAATATATAGGGAGAATATCTTACAAAAATCTTTCTATTTCAAGATACCACTGGGGCCAGGAAATGTGAAAATTTTATATGGAAGCGGGTTGCCTTGAATATAGAAGGAGATTACCAGTTTGTGTCAAAAATCATGACCCCCGAGGAGCTCGGTTACTATGGGGCCCATTAGGGGATCCAAAGTTTTACATATGATTATATAGGAAAAAATCTTAAAAATCCTCTTTCTCAAGAANCACTGGGCCAGAAAGANGAAATATTTATNTNGGAGCTTCCTGATATGGAGNAGATTCAAGTTT-GGTTCAAA-TC----------------------ATGACCC--------CCGGGGNTAGGGTGGGGCCACAAGTANGGGATNAAGGTTTTACATGNCGGAATATATCATAGGGAAAATCTTTAAAAATCTTCTTCTCAAGAACCGCCCTGCGGCGAGGAAAGCTGGAAATTTATATGAAATCTT-CNTGATATAGTGGAGATGNTTCAAGTTTTGTTCAAATCATGACCGCTNGGGGTANGGCGGAGCNCNAACTANNGGATCAAAGTTTTACATNCAGATATATAGAGAAATTCTTTAAAAATCTTTTTCGAGATTGAACCAGGAAGATTATGTTTTACCGAAGACTTCTGACTATGCGTAGATTTAAGGTGGTTCAGATTA
gi|1 : AAACTTCATAT-ATTTT-TTAGCTCACC--TGAGCCG-----AAGGCTCATAGT-G-ATCTTTTCTGTTGATCAA--AATT---------TGT--------C-GTTGG----TC-----TG----TCGTC------G------TCG---TTGTC-G-TA--A-AACGTTT-T--CAC-A-TT--T-CAA--T--TCTTCT------CAAGA-CCAC-TGG-TC--AAATTCAACCAAACTTTGGT----ACACATCA-CC-TT-GG-GTGAAGGGGCTTCAA--T--TTGT-CAAA-TGGGAAGGGACCAG-GCCTCACCAAAGGGGAGATAATCATGAAAATGCAAAAATAGGG--GTGTATTTTAAAAATCTTCTTCTCAAGACCAC---TGGGCAGCAAAGCTGGAAAATT-A--ATGGAAGGCTTCCTGAAATATACGAGGAGATTCAAGGTTTGTTCAAATCATGACCCCCCGGGGGTACGATGGGGCCA-AATAGGGGATCAAAGTTTTACATACGGATTATATAGGAGAAATCTTCTTAAAAATCTTCTTCTCTCAAGAACGCACTAGGCCAGGAAA-CTGAAATTTTATATTGAAAGCTTCCTGATGTTAGAGGAGATGTAAAGTGTTGTGTTCAAATC-TGACCCCCCGGGGTACGATTGGAGGCCACAATTAGGGATCAAA--TTTTACATG-AGATATATATAGGGAAATCTTTAAAAATCTTCTTCTCAAGAACCACTATGGGCCAGGAAAGCTGAAATTTATATGAAAGCTTCCTGAT-TAGAG-GGAGATTACAAAGTGTTG-TTCAAAATCATGA--CCCGGGGGTACTATGGT-GGGCCATTCAATAGTGGGAAGGTCCAAATTGGGTACATGAGTATATAGAGATAAATCT-TTAAAAATGCTTCTTTCTTCTCAAGAACCACTGGGCCAGG------TAAACTGCTGAAAATTT-TTAATAGTGAAAGC-GTTCTGA-TATTAGATGGGAGGATAGTGCAT--AGGGTTTGTTCAAATGTGCATGGACGCCGGAGGGTGGACTGATGGTGGCCCCAAGTAGGGGATCAAG----TGCAT-TTTA-ATCATGAT---TAT-TAGAGGGTAAAAATCTTTT-AAAAAGATCTTTCTTCACGTACATAAGCTAACCACTTTGGGCTCAGGA-AAGCTTGAAGGTTTG--AGTATGGAACGGCTTCCTGA-ATAGTGGGTACGATTCAAGTTTGTTCAAATCATGACCCCCGGGTAACGTAGTGGGGCCCCAATGACAGGAATCAATTGAGGTTAGCATACTGATATAATATATAGGGAGAATATCTTACAAAAATCTTTCTATTTCAAGATACCACTGGGGCCAGGAAATGTGAAAATTTTATATGGAAGCGGGTTGCCTTGAATATAGAAGGAGATTACCAGTTTGTGTCAAAAATCATGACCCCCGAGGAGCTCGGTTACTATGGGGCCCATTAGGGGATCCAAAGTTTTACATATGATTATATAGGAAAAAATCTTAAAAATCTTCTTTTTCAAGAACCACTGGGCCAGAAAGATGAA--ATTTATATTGGAGCTTCCTGATATAGAGGAGATTCAAGTTT-GATTCAAA-TC----------------------A-GACCC--------CCGGGGGTATGAT-GGGCCACA--TAGGGGATCAAAGTTTTACATGCCAGAAT-TATCATAGAGAAAATCTTTAAAAATCTTCTTCTCAAGAACCGCCCTGCGGCGAGGAAAGCTGGAAATTTATATGAAATCTT-CGT-ATATAGTGGAGATGGTTCAAGTTTTGTTCAAATCATGATC-CTCGGGGTATGAT-GAGCCCCAATTAGGGGATCAAAG-TTTACATGCAGATATATAGAGAAATTCTTTAAAAATCTTTTTCGAGATTGAACCAGGAAGATTATGTTTTACCGAAGACTTCTGACTATGCGTAGATTTAAGGTGGTTCAGATTA
gi|10 : CTTACCTGATATAGTGGAGAT-TTTCAAGTTT-GTTCAAATCATGACCGCTGGAGATAGGGCGGAG-ACAAACTATTGGATCAAA-TTTTACATTCAAATATATTGATTGATTGTTTaatgcctccaccga
gi|11 : ggT-TTAGCTCACC--TGAAACATTTACAAAGCTCA-CGT-G-ATCTCCTC--T-GATCAG--TATT---------TTT--------C----------TC-----TG----TCGTC------A------TT-------TC----A--A-AAC--TA-T--CAT-G-TT--T------T--TCCTTT------AAAAAATCAC-TG
gi|12 : ttgATTG-TTAATTCATC--TGAGATT-----AAAGCTGA-AGT-G-AATTTTTTCA--GATCAA--AGTTGTGTATACATGT--------A-CTC------TC-----TGATTCTTGTT------G------TTG---TTGTC-A-T---T-AAC-TTatc
gi|13 : TAGCTCAAT--AGAGTGA-----AAGGGTTA-GAT-G-AGCTTTC---T-GATTAA--A-----------------------------------C-----TG----TCTTC------G------TTG---T-----------A-AAT-GTT-T--CAC-ATTT--T-CATTGT--TCTTTT------CCAGAACTA
gi|14 : ttgcTTG-TTAATTCATC--TGAGATT-----AAAGCTGA-AGT-G-AATTTTTCAG---ATCAA--AGTTGTGTATACATGT--------A-CTC------TC-----TGATTCTTGTT------G------TTG---TTGTC-A-T---T-AAC-TTT-a
gi|15 : CTCA-CCT-G-AG-TCTTCTG---ATCAG--AATT---------TGTGCCTTGTTT-GTTGGTG--TCAACAGTG----TTGTC------AGTGGCATCA---TTGAC-G-TA--A-A-C-TTT-T--CACAA-TT--T-CA---T--
gi|16 : CTCA-CCT-G-AG-TCTTCTG---ATCAG--AATT---------TGTGCCTTGTTT-GTTGGTG--TCAACAGTG----TTGTC------AGTGGCATCA---TTGAC-G-TA--A-A-C-TTT-T--CACAA-TT--T-CA---T--ct
gi|17 : GATCCA-----AAAGCTCA-AGT-G-AAC-TATCTAT---TTGA--AATT---------TAT--------CAGTTG-----TC-----T-----TCGTCCTTCTTG------TCGCTTTTGTC-G-T---A-AAC-TTT-ct
gi|18 : AAGGTTTG-ATCA-TTT-TTAGCTTACT--TGAGCTA-----AAAACTCA-AGT-G-AGCTTTTC--T-GATCAC--CTTT---------TGT--------C----------TC-----TG----T
gi|19 : gaagaTTTTATGAATTT---AGCTCACA--AGAGCTG-----AAGGCTTA-AATCC-AGCTTTTC--T-GATCAA--AGTG---------TGT--------C---T------TC-----TA----T
gi|2 : AAGTTTTATATCAATTA-TTAACTCACC--TGAGCAG-----AAGGCTCA-AGT-G-AGCTATTCTG---ATCAA--AATT---------TGT--------CCATTA-----TC-----TG----TCGTC------G------TTG---TTGTT-G-TTGTA-AAC-TTT-T--CAC-A-TT--TTCA---TCTTGTTCT------CCAGAACCAG-TGGGCC--AAATTCAAACAAAACTTGGT----ACAAATCA-TC-TTTAA-GT-AAGTGGATTCAAT-T--TTTTTCAAA-TG---AAGAACCTGAGCCCCTTAAAAGGGGATATAATCACGAAAATGCAAAAATAGGGTGGTGTCATTTAAAAATCTTCT---CAAGA--ACCACTGGGC--CAGAA---AAGAATT-TCTATGAAAG-CTTCTTGA--TATT-GTGGAGATTCAAG-TTTGTTCTAATCATGACCCCC-GGGGGTACGGTGGGGCCACAATAGGGGATCAAAGTTTTACATGTGAAT-ATATAGGGGAACTCTTCTTG--------------TGAAGAAC-CACTGGGTCAGAAAAGCTGAAATT-CATA-AGAAAGCTTCTTGATAT-AGTGGAGATTCAA---GTT-TGTTCAAATCATGACCACCGAGAATAC-GA-AGGGGCCACA-TTAGGGGTTAAAAGTTTTATATGTGAATACATAT-GGAAAATCGTTAAAAATCTTCTTGTGAAGAACCACT--GGGCTAGAATAGCTGAAATTTATATGAAAGCTTCCTGATAT--AGTGGAGATT-CAA-GT-TTG-TTT-AAATCATGACTCCCGGG---AGTACGGTGGGGCCA--CAATAG-GGGA---TCAAAGTTT--TACACGTGTATATA-AGAAAAATCT-T-------------------TCAAGAACCACTGGGGCAGA------AAAACTG----AAATTTAT-----ATGGAAGA-TTCCTGA-TGTAG--TGGAA-------------AG---TTGGTCAAAT---CAT-GATCCCGG-GGGT--AC-GATGG-GGCCACAA-CA-GGGATCAAAGTTTTACATGTGTATAT-ATGATGTGTATATATCGGG--AGAATCTTTTTAAAAA-ATCT-------------CAAG--AACTA--TTGGAC-CAGAAGAAAC---AA--TATCTAA-CCTAAAA--TATTCTTGATATAGA--GTA-GATTCAAGTTTGGTCAGATCATGACCCTCttg
gi|20 : gaTTTGTATCAATGTATTAACTCACC--TGAGCCA-----AAGGCTTC-AAT-G-AGCatcccggttgaagggtgatgct
gi|21 : GATTCAAGTTT-G--TCAAAATC----------------------ATGACTC--------CTGGGTATAGGGT
gi|22 : TGCAAAAGTAGGGTGGGGTCATTTAAAAA---TAT---CAAGA--AC---aag
gi|3 : TTTAAAATCCTCTT-CTCAAGAAAC-CTGAACCAAAAAAAAAAAATATTTATCTGAAAGCTTCCTG-TATGGAGTATATTTAAGTTTGGGTTCAGA-TCACCCTCCCGCACCCCCCCCAATATGACCCATTTTTTACAAGGGTTAGGGTGGGGCCACAAGTATGGAATAAAGGTTTTACATAACGAAATATAT-ATAGGGAAAATTTT
gi|4 : TTT-TTA-CTGAACAATGAGCCA-----AAGACTCA-GGT-GTAACTGTTCTG---ATCAACAAAAT---------CAA--------C-GCT------T-------G----TCG--------G------TCG---TGATC-T-TA--G-AAC-GTTGT--CAC-A-TT--T---------TCTTCTGCGCTCCGAGA-CCAT-TGG-CCAAAAATT-AACAAAAC--TGGTAAAGACAAATTT-CG-TT-GGAGTGATCGGGATTTCAA-CGGTTGTTTAAAGTG---A
gi|5 : -AGT-G-AGCTTTTC--T-GATCAA--AACTA--------TAT--------T-GTCCAGCCATC-----TG----TTGTT------GGCAACCTTG---TCATC-GATT--A-AAC-ATT-TAGCAC---TT--T-CACC-T--TATCCT------AGATAAGCAG-TGG-Catgcgggccag
gi|6 : cttgcatgatggtttagtatcaactcaggctctaaacttaacTGTAGAT--CAA-AT-TTGGTTCACA-TGATGA--CC-------ACCA-----GAGCCA--C--TAG-TG-----TTAAA-TGT--TGCACGTAAATACT-GGACAATTCTATCAAAA----------TCTCGCA-GAACCACAGGGGTATATTTTGTAAAA--------------T-----ATGCCAGCATTCTTAAGTATTG--T----AGAT------TAAAG---TTGTTCTCAC---CATGGCCCtgctaattattatcattctcaaaaaatgcacaaatatcatta
gi|7 : tgtaT-GGTCAA--AATT---------CGT--------C-CCTCG----TC-----CA----TTATCAGT---G------TCA---TTATT-G-TA--ATAAA-T-------AG-A----------------CTTCT------CGAGAATCACATGG-TC--AATTCTAACCAA-CTTCC-T----ACAAAGCA-TCATT-GG-GTACAGGGTATTCAAAAT--TTGTCCAAA-GG---AGAGACCAT-GTC
gi|8 : ttgc----ACAAATCATCC-TT-GA-TTGAAGGGGACTCAAA-T--GTGTTCAAA-TG---AAGGACTTT-GCTCTATCAAAGGAGAGATAATCACGAAAATACAAAAACAGGGTGGTATCAT---------TTCT---CAAGA--A--------C--CAAAGCT-GAAATTTGT--ATGAAAG-ATACCTGA--t
gi|9 : ---TTGTCTG-TA--A-A----TT-T--CAC-A-TTTCT-CATC-T--TGTTCT------CCCAAACCAC-TGA-C
Alignments
lowQualScore : 111111111111111111111111111111111111
lowQualScore : 1111111 33333 99999999999999999999999999999999999999999999999999999999999999 1111111 222222222 111111 11 1111 11111 111 111 11 111 22222222222222 1111 3333 1 11 11 1 1 1 1 55555555555555 1 1 1 11 1 222 1 1 2222 1 11 1 1 11 2222 22 1 1 1 11 2222222 22222 11 33333333 111111 1 7777777777777777777 777777777777777777777777777777 1 1 8888888888888888888888888 222 1 11 1 1 1111 2222 1 1 1 222 1 11 1 1 4444444444444 11 11 1 1 222222222222222 1111 1 111 1 1 1 11 1 22 1 333333333333333333333333333333333333 1 11 1 1 1 1 11 1 1 1 11 33
lowQualScore : 1 22 5 3 4 1 55 2222222 2 2 2 00000 33 33333333333333333333333333333333333333333333333333333333333333 555 3333333 3 2 55 3 55 999 55 888888888 444444 3 3 5 6 33 6 3 7 2 7777 8 8 8 8 3 99999 3 8 444 222 3 3 11 777 77777777777777 4444 1111 3 88 66 1 5 1 5 5 5 1 22222222222222 1 5 5 5 66 5 1 1 111 5 5 1 2 5555 5 88 5 5 1 1 1 88 1 4444 7 00 3 3 3 7 7 88 5555555 11111 88 7 00000000 999999 3 1 8888888888888888888 7 555555555555555555555555555555 1 3 3 5555555555555555555555555 333 6 5 77 5 5 1 9999 4444 5 1 5 5 000 5 22 88 5 5 9999999999999 88 88 5 5 999999999999999 1 9999 5 888 5 1 1 5 1 5 1 88 1 1 5 1 55 3 000000000000000000000000000000000000 3 1 5 88 1 1 1 5 5 5 1 5 66 5 5 1 1 5 66 1 22 00 1 1 22 1
lowQualScore : . .. . . . . .. ....... . . . ..... .. .............................................................. ... ....... . . .. . .. ... .. ......... ...... . . . . .. . . . . .... . . . . . ..... . . ... ... . . .. ... .............. .... .... . .. .. . . . . . . . .............. . . . . .. . . . ... . . . . .... . .. . . . . . .. . .... . .. . . . . . .. ....... ..... .. . ........ ...... . . ................... . .............................. . . . ......................... ... . . .. . . . .... .... . . . . ... . .. .. . . ............. .. .. . . ............... . .... . ... . . . . . . . .. . . . . .. . .................................... . . . .. . . . . . . . . .. . . . . . .. . .. .. . . .. .
lowQualScore : 0 22 0 5 4 4 55 7777777 9 9 9 55555 99 88888888888888888888888888888888888888888888888888888888888888 444 4444444 1 3 44 3 55 444 55 000000000 444444 4 2 7 7 88 5 2 0 5 0000 0 0 0 0 2 00000 8 0 000 000 2 2 88 555 11111111111111 3333 3333 3 33 00 0 0 0 0 0 5 0 55555555555555 0 0 0 5 55 5 0 0 000 0 5 0 5 0000 5 00 5 5 0 0 0 55 0 5555 3 77 3 3 3 3 3 33 0000000 00000 33 3 77777777 333333 3 0 0000000000000000000 3 000000000000000000000000000000 0 3 3 3333333333333333333333333 333 7 5 55 5 5 0 0000 0000 0 0 5 0 555 5 00 55 5 0 0000000000000 00 00 5 0 000000000000000 0 5555 5 555 0 0 0 5 0 5 0 55 0 0 5 0 33 3 333333333333333333333333333333333333 7 0 0 00 0 0 0 5 0 5 0 0 00 5 0 0 0 0 00 0 00 55 0 0 00 0
consensus : AAGNTTTGTATCAATTT-TTAGCTCACC--TGAGCCG-----AAGGCTCA-AGT-G-AGCTTTTCTGT-GATCAA--AATT---------TGT--------C-GTT------TC-----TG----TCGTC------G------TCG---TTGTC-G-TA--A-AAC-TTT-T--CAC-A-TT--T-CA---T--TCTTCT------CGAGAACCAC-TGG-CC--AAATTCAACCAAACTTTGGT----ACAAATCA-CC-TT-GG-GTGAAGGGGATTCAAA-T--TTGTTCAAA-TG---AGGGACCNN-GCCCCATCAAAGGGGAGATAATCACGAAAATGCAAAAATAGGGTGGTGTCATTTAAAAATCTTCT---CAAGA--AC---TGGGC--CAAAGCTG-AAAATT-T--ATGAAAG-CTTCCTGA--TATNCGNGGAGATTCAAGGTTTGTTCNAATCATGACCCCCCGGGGGTACGGTGGGGCCACAATAGGGGATCAAAGTTTTACATGCGGATTATATAGGGGAANTCTTCTTGAAAATCTTCTTCTCTNAAGAACGCACTGGGCCAGGAAAGCTGAAATTTCATATNGAAAGCTTCCTGATGTTAGNGGAGATNCAAAGTGTTGTGTTCAAATCATGACCNCCCGGGGTACGANTGGGGGCCACAATTAGGGGTCAAAAGTTTTACATGTGGATACATATAGGGAAATCNTTAAAAATCTTCTTNTNAAGAACCACTATGGGCCAGGANAGCTGAAATTTATATGAAAGCTTCCTGATATAGAGTGGAGATT-CAA-GT-TTG-TTCAAAATCATGA--CCCGGG---ACTACGGT-GGGCCA--CAATAG-GGGA---TCAAAGTTT--TACACGTGTATATA-AGANAAATCT-TCAAAA----------CCTCTCAAGAACCACTGGGGCAGA------AAAACTG----AAATTT-T-----ATGNAAGC-TTCCTGA-TATTG--TGGGAGGAT------T--AG---TTGTTCAAAT---CATGGACCCCGGAGGGTGGACTGATGGTGGCCNCAAGCAGGGGATCAAGGTTTTGCATGTNTATATCATGATGTGTATATANNGGGTAAGAATCTTTTTAAAAAGATCTTTCTTCACGTACACAAGCTAACCACTTTGGGCTCAGGAGAAGCTTGAAGGTNTNTAAGCNTGGAACGNNTTCCTGATATAGNGGGTACGATTCAAGTTTGNTCAGATCATGACCCCCGGGTAACGTAGTGGGGCCCCAATGACAGGAATCAATTGAGGTTAGCATACTGATATAATATATAGGGAGAATATCTTACAAAAATCTTTCTATTTCAAGATACCACTGGGGCCAGGAAATGTGAAAATTTTATATGGAAGCGGGTTGCCTTGAATATAGAAGGAGATTACCAGTTTGTGTCAAAAATCATGACCCCCGAGGAGCTCGGTTACTATGGGGCCCATTAGGGGATCCAAAGTTTTACATATGATTATATAGGAAAAAATCTTNAAAATCCTCTTTCTCAAGAANCACTGGGCCAGAAAGANGAAATATTTATNTNGGAGCTTCCTGATATGGAGNAGATTCAAGTTTGG-TTCAAA-TCA----------------------TGACCC--------CCGGGGNTAGGGTGGGGCCACAAGTANGGGATNAAGGTTTTACATGNCGGAATATATCATAGGGAAAATCTTTAAAAATCTTCTTCTCAAGAACCGCCCTGCGGCGAGGAAAGCTGGAAATTTATATGAAATCTTACNTGATATAGTGGAGATGNTTCAAGTTTTGTTCAAATCATGACCGCTNGGGGTANGGCGGAGCNCNAACTANNGGATCAAAGTTTTACATNCAGATATATNGANNGATTNTTTAAAAATCTTTTTCGAGATTGAACCAGGAAGATTATGTTTTACCGAAGACTTCTGACTATGCGTAGATTTAAGGTGGTTCAGATTA
Reference ( family-85 ) : AAGNTTTGTATCAATTT-TTAGCTCACC--TGAGCCG-----AAGGCTCA-AGT-G-AGCTTTTCTGT-GATCAA--AATT---------TGT--------C-GTT------TC-----TG----TCGTC------G------TCG---TTGTC-G-TA--A-AAC-TTT-T--CAC-A-TT--T-CA---T--TCTTCT------CGAGAACCAC-TGG-CC--AAATTCAACCAAACTTTGGT----ACAAATCA-CC-TT-GG-GTGAAGGGGATTCAAA-T--TTGTTCAAA-TG---AGGGACCNN-GCCCCATCAAAGGGGAGATAATCACGAAAATGCAAAAATAGGGTGGTGTCATTTAAAAATCTTCT---CAAGA--AC---TGGGC--CAAAGCTG-AAAATT-T--ATGAAAG-CTTCCTGA--TATNCGNGGAGATTCAAGGTTTGTTCNAATCATGACCCCCCGGGGGTACGGTGGGGCCACAATAGGGGATCAAAGTTTTACATGCGGATTATATAGGGGAANTCTTCTTGAAAATCTTCTTCTCTNAAGAACGCACTGGGCCAGGAAAGCTGAAATTTCATATNGAAAGCTTCCTGATGTTAGNGGAGATNCAAAGTGTTGTGTTCAAATCATGACCNCCCGGGGTACGGNTGGGGGCCACAATTAGGGGTCAAAAGTTTTACATGTGGATACATATAGGGAAATCNTTAAAAATCTTCTTNTNAAGAACCACTATGGGCCAGGANAGCTGAAATTTATATGAAAGCTTCCTGATATAGAGTGGAGATT-CAA-GT-TTG-TTCAAAATCATGA--CCCGGG---ACTACGGT-GGGCCA--CAATAG-GGGA---TCAAAGTTT--TACACGTGTATATA-AGANAAATCT-TCAAAA----------CCTCTCAAGAACCACTGGGGCAGA------AAAACTG----AAATTT-T-----ATGNAAGC-TTCCTGA-TATTG--TGGGAGGAT------T--AG---TTGTTCAAAT---CATGGACCCCGGAGGGTGGACTGATGGTGGCCNCAAGCAGGGGATCAAGGTTTTGCATGTNTATATCATGATGTGTATATANNGGGTAAGAATCTTTTTAAAAAGATCTTTCTTCACGTACACAAGCTAACCACTTTGGGCTCAGGAGAAGCTTGAAGGTNTNTAAGCNTGGAACGNNTTCCTGATATAGNGGGTACGATTCAAGTTTGNTCAGATCATGACCCCCGGGTAACGTAGTGGGGCCCCAATGACAGGAATCAATTGAGGTTAGCATACTGATATAATATATAGGGAGAATATCTTACAAAAATCTTTCTATTTCAAGATACCACTGGGGCCAGGAAATGTGAAAATTTTATATGGAAGCGGGTTGCCTTGAATATAGAAGGAGATTACCAGTTTGTGTCAAAAATCATGACCCCCGAGGAGCTCGGTTACTATGGGGCCCATTAGGGGATCCAAAGTTTTACATATGATTATATAGGAAAAAATCTTNAAAATCCTCTTTCTCAAGAANCACTGGGCCAGAAAGANGAAATATTTATNTNGGAGCTTCCTGATATGGAGNAGATTCAAGTTTGG-TTCAAA-TCA----------------------TGACCC--------CCGGGGNTAGGGTGGGGCCACAAGTANGGGATNAAGGTTTTACATGNCGGAATATATCATAGGGAAAATCTTTAAAAATCTTCTTCTCAAGAACCGCCCTGCGGCGAGGAAAGCTGGAAATTTATATGAAATCTTACNTGATATAGTGGAGATGNTTCAAGTTTTGTTCAAATCATGACCGCTNGGGGTANGGCGGAGCNCNAACTANNGGATCAAAGTTTTACATNCAGATATATNGANNGATTNTTTAAAAATCTTTTTCGAGATTGAACCAGGAAGATTATGTTTTACCGAAGACTTCTGACTATGCGTAGATTTAAGGTGGTTCAGATTA
gi|1 : AAACTTCATAT-ATTTT-TTAGCTCACC--TGAGCCG-----AAGGCTCATAGT-G-ATCTTTTCTGTTGATCAA--AATT---------TGT--------C-GTTGG----TC-----TG----TCGTC------G------TCG---TTGTC-G-TA--A-AACGTTT-T--CAC-A-TT--T-CAA--T--TCTTCT------CAAGA-CCAC-TGG-TC--AAATTCAACCAAACTTTGGT----ACACATCA-CC-TT-GG-GTGAAGGGGCTTCAA--T--TTGT-CAAA-TGGGAAGGGACCAG-GCCTCACCAAAGGGGAGATAATCATGAAAATGCAAAAATAGGG--GTGTATTTTAAAAATCTTCTTCTCAAGACCAC---TGGGCAGCAAAGCTGGAAAATT-A--ATGGAAGGCTTCCTGAAATATACGAGGAGATTCAAGGTTTGTTCAAATCATGACCCCCCGGGGGTACGATGGGGCCA-AATAGGGGATCAAAGTTTTACATACGGATTATATAGGAGAAATCTTCTTAAAAATCTTCTTCTCTCAAGAACGCACTAGGCCAGGAAA-CTGAAATTTTATATTGAAAGCTTCCTGATGTTAGAGGAGATGTAAAGTGTTGTGTTCAAATC-TGACCCCCCGGGGTACGATTGGAGGCCACAATTAGGGATCAAA--TTTTACATG-AGATATATATAGGGAAATCTTTAAAAATCTTCTTCTCAAGAACCACTATGGGCCAGGAAAGCTGAAATTTATATGAAAGCTTCCTGAT-TAGAG-GGAGATTACAAAGTGTTG-TTCAAAATCATGA--CCCGGGGGTACTATGGT-GGGCCATTCAATAGTGGGAAGGTCCAAATTGGGTACATGAGTATATAGAGATAAATCT-TTAAAAATGCTTCTTTCTTCTCAAGAACCACTGGGCCAGG------TAAACTGCTGAAAATTT-TTAATAGTGAAAGC-GTTCTGA-TATTAGATGGGAGGATAGTGCAT--AGGGTTTGTTCAAATGTGCATGGACGCCGGAGGGTGGACTGATGGTGGCCCCAAGTAGGGGATCAAG----TGCAT-TTTA-ATCATGAT---TAT-TAGAGGGTAAAAATCTTTT-AAAAAGATCTTTCTTCACGTACATAAGCTAACCACTTTGGGCTCAGGA-AAGCTTGAAGGTTTG--AGTATGGAACGGCTTCCTGA-ATAGTGGGTACGATTCAAGTTTGTTCAAATCATGACCCCCGGGTAACGTAGTGGGGCCCCAATGACAGGAATCAATTGAGGTTAGCATACTGATATAATATATAGGGAGAATATCTTACAAAAATCTTTCTATTTCAAGATACCACTGGGGCCAGGAAATGTGAAAATTTTATATGGAAGCGGGTTGCCTTGAATATAGAAGGAGATTACCAGTTTGTGTCAAAAATCATGACCCCCGAGGAGCTCGGTTACTATGGGGCCCATTAGGGGATCCAAAGTTTTACATATGATTATATAGGAAAAAATCTTAAAAATCTTCTTTTTCAAGAACCACTGGGCCAGAAAGATGAA--ATTTATATTGGAGCTTCCTGATATAGAGGAGATTCAAGTTTGA-TTCAAA-TCA-----------------------GACCC--------CCGGGGGTATGAT-GGGCCACA--TAGGGGATCAAAGTTTTACATGCCAGAAT-TATCATAGAGAAAATCTTTAAAAATCTTCTTCTCAAGAACCGCCCTGCGGCGAGGAAAGCTGGAAATTTATATGAAATCTT-CGT-ATATAGTGGAGATGGTTCAAGTTTTGTTCAAATCATGATC-CTCGGGGTATGAT-GAGCCCCAATTAGGGGATCAAAG-TTTACATGCAGATATATAGAGAAATTCTTTAAAAATCTTTTTCGAGATTGAACCAGGAAGATTATGTTTTACCGAAGACTTCTGACTATGCGTAGATTTAAGGTGGTTCAGATTA
gi|10 : CTTACCTGATATAGTGGAGAT-TTTCAAGTTT-GTTCAAATCATGACCGCTGGAGATAGGGCGGAG-ACAAACTATTGGATCAAA-TTTTACATTCAAATATATTGATTGATTGTTTaatgcctccaccga
gi|11 : ggT-TTAGCTCACC--TGAAACATTTACAAAGCTCA-CGT-G-ATCTCCTC--T-GATCAG--TATT---------TTT--------C----------TC-----TG----TCGTC------A------TT-------TC----A--A-AAC--TA-T--CAT-G-TT--T------T--TCCTTT------AAAAAATCAC-TG
gi|12 : ttgATTG-TTAATTCATC--TGAGATT-----AAAGCTGA-AGT-G-AATTTTTTCA--GATCAA--AGTTGTGTATACATGT--------A-CTC------TC-----TGATTCTTGTT------G------TTG---TTGTC-A-T---T-AAC-TTatc
gi|13 : TAGCTCAAT--AGAGTGA-----AAGGGTTA-GAT-G-AGCTTTC---T-GATTAA--A-----------------------------------C-----TG----TCTTC------G------TTG---T-----------A-AAT-GTT-T--CAC-ATTT--T-CATTGT--TCTTTT------CCAGAACTA
gi|14 : ttgcTTG-TTAATTCATC--TGAGATT-----AAAGCTGA-AGT-G-AATTTTTCAG---ATCAA--AGTTGTGTATACATGT--------A-CTC------TC-----TGATTCTTGTT------G------TTG---TTGTC-A-T---T-AAC-TTT-a
gi|15 : CTCA-CCT-G-AG-TCTTCTG---ATCAG--AATT---------TGTGCCTTGTTT-GTTGGTG--TCAACAGTG----TTGTC------AGTGGCATCA---TTGAC-G-TA--A-A-C-TTT-T--CACAA-TT--T-CA---T--
gi|16 : CTCA-CCT-G-AG-TCTTCTG---ATCAG--AATT---------TGTGCCTTGTTT-GTTGGTG--TCAACAGTG----TTGTC------AGTGGCATCA---TTGAC-G-TA--A-A-C-TTT-T--CACAA-TT--T-CA---T--ct
gi|17 : GATCCA-----AAAGCTCA-AGT-G-AAC-TATCTAT---TTGA--AATT---------TAT--------CAGTTG-----TC-----T-----TCGTCCTTCTTG------TCGCTTTTGTC-G-T---A-AAC-TTT-ct
gi|18 : AAGGTTTG-ATCA-TTT-TTAGCTTACT--TGAGCTA-----AAAACTCA-AGT-G-AGCTTTTC--T-GATCAC--CTTT---------TGT--------C----------TC-----TG----T
gi|19 : gaagaTTTTATGAATTT---AGCTCACA--AGAGCTG-----AAGGCTTA-AATCC-AGCTTTTC--T-GATCAA--AGTG---------TGT--------C---T------TC-----TA----T
gi|2 : AAGTTTTATATCAATTA-TTAACTCACC--TGAGCAG-----AAGGCTCA-AGT-G-AGCTATTCTG---ATCAA--AATT---------TGT--------CCATTA-----TC-----TG----TCGTC------G------TTG---TTGTT-G-TTGTA-AAC-TTT-T--CAC-A-TT--TTCA---TCTTGTTCT------CCAGAACCAG-TGGGCC--AAATTCAAACAAAACTTGGT----ACAAATCA-TC-TTTAA-GT-AAGTGGATTCAAT-T--TTTTTCAAA-TG---AAGAACCTGAGCCCCTTAAAAGGGGATATAATCACGAAAATGCAAAAATAGGGTGGTGTCATTTAAAAATCTTCT---CAAGA--ACCACTGGGC--CAGAA--A-AGAATT-TCTATGAAAG-CTTCTTGA--TATT-GTGGAGATTCAAG-TTTGTTCTAATCATGACCCCC-GGGGGTACGGTGGGGCCACAATAGGGGATCAAAGTTTTACATGTGAAT-ATATAGGGGAACTCTTCTTG--------------TGAAGAAC-CACTGGGTCAGAAAAGCTGAAATT-CATA-AGAAAGCTTCTTGATAT-AGTGGAGATTCAA---GTT-TGTTCAAATCATGACCACCGAGAATACGAA--GGGGCCACA-TTAGGGGTTAAAAGTTTTATATGTGAATACATAT-GGAAAATCGTTAAAAATCTTCTTGTGAAGAACCACT--GGGCTAGAATAGCTGAAATTTATATGAAAGCTTCCTGATAT--AGTGGAGATT-CAA-GT-TTG-TTT-AAATCATGACTCCCGGG---AGTACGGTGGGGCCA--CAATAG-GGGA---TCAAAGTTT--TACACGTGTATATA-AGAAAAATCT-T-------------------TCAAGAACCACTGGGGCAGA------AAAACTG----AAATTTAT-----ATGGAAGA-TTCCTGA-TGTAG--TGGAA-------------AG---TTGGTCAAAT---CAT-GATCCCGG-GGGT--AC-GATGG-GGCCACAA-CA-GGGATCAAAGTTTTACATGTGTATAT-ATGATGTGTATATATCGGG--AGAATCTTTTTAAAAA-ATCT-------------CAAG--AACTA--TTGGAC-CAGAAGAAAC---AA--TATCTAA-CCTAAAA--TATTCTTGATATAGA--GTA-GATTCAAGTTTGGTCAGATCATGACCCTCttg
gi|20 : gaTTTGTATCAATGTATTAACTCACC--TGAGCCA-----AAGGCTTC-AAT-G-AGCatcccggttgaagggtgatgct
gi|21 : GATTCAAGTTTG---TCAAAATCA----------------------TGACTC--------CTGGGTATAGGGT
gi|22 : TGCAAAAGTAGGGTGGGGTCATTTAAAAA---TAT---CAAGA--AC---aag
gi|3 : TTTAAAATCCTCTT-CTCAAGAAAC-CTGAACCAAAAAAAAAAAATATTTATCTGAAAGCTTCCTG-TATGGAGTATATTTAAGTTTGGGTTCAGA-TCACCCTCCCGCACCCCCCCCAATATGACCCATTTTTTACAAGGGTTAGGGTGGGGCCACAAGTATGGAATAAAGGTTTTACATAACGAAATATAT-ATAGGGAAAATTTT
gi|4 : TTT-TTA-CTGAACAATGAGCCA-----AAGACTCA-GGT-GTAACTGTTCTG---ATCAACAAAAT---------CAA--------C-GCT------T-------G----TCG--------G------TCG---TGATC-T-TA--G-AAC-GTTGT--CAC-A-TT--T---------TCTTCTGCGCTCCGAGA-CCAT-TGG-CCAAAAATT-AACAAAAC--TGGTAAAGACAAATTT-CG-TT-GGAGTGATCGGGATTTCAA-CGGTTGTTTAAAGTG---A
gi|5 : -AGT-G-AGCTTTTC--T-GATCAA--AACTA--------TAT--------T-GTCCAGCCATC-----TG----TTGTT------GGCAACCTTG---TCATC-GATT--A-AAC-ATT-TAGCAC---TT--T-CACC-T--TATCCT------AGATAAGCAG-TGG-Catgcgggccag
gi|6 : cttgcatgatggtttagtatcaactcaggctctaaacttaacTGTAGAT--CAA-AT-TTGGTTCACA-TGATGA--CC-------ACCA-----GAGCCA--C--TAG-TG-----TTAAA-TGT--TGCACGTAAATACT-GGACAATTCTATCAAAA----------TCTCGCA-GAACCACAGGGGTATATTTTGTAAAA--------------T-----ATGCCAGCATTCTTAAGTATTG--T----AGAT------TAAAG---TTGTTCTCAC---CATGGCCCtgctaattattatcattctcaaaaaatgcacaaatatcatta
gi|7 : tgtaT-GGTCAA--AATT---------CGT--------C-CCTCG----TC-----CA----TTATCAGT---G------TCA---TTATT-G-TA--ATAAA-T-------AG-A----------------CTTCT------CGAGAATCACATGG-TC--AATTCTAACCAA-CTTCC-T----ACAAAGCA-TCATT-GG-GTACAGGGTATTCAAAAT--TTGTCCAAA-GG---AGAGACCAT-GTC
gi|8 : ttgc----ACAAATCATCC-TT-GA-TTGAAGGGGACTCAAA-T--GTGTTCAAA-TG---AAGGACTTT-GCTCTATCAAAGGAGAGATAATCACGAAAATACAAAAACAGGGTGGTATCAT---------TTCT---CAAGA--A--------C--CAAAGCTG-AAATTTGT--ATGAAAG-ATACCTGA--t
gi|9 : ---TTGTCTG-TA--A-A----TT-T--CAC-A-TTTCT-CATC-T--TGTTCT------CCCAAACCAC-TGA-C
Alignments
lowQualScore : 111111111111111111111111111111111111
lowQualScore : 1111111 33333 99999999999999999999999999999999999999999999999999999999999999 1111111 222222222 111111 11 1111 11111 111 111 11 111 22222222222222 1111 3333 1 11 11 1 1 1 1 55555555555555 1 1 1 11 1 222 1 1 111 1 11 1 1 11 2222 22 1 1 1 11 2222222 22222 11 33333333 111111 1 7777777777777777777 777777777777777777777777777777 1 1 8888888888888888888888888 222 1 11 1 1 1111 2222 1 1 1 222 1 11 1 1 4444444444444 11 11 1 1 222222222222222 1111 1 111 1 1 1 11 1 22 1 333333333333333333333333333333333333 1 11 1 1 1 1 11 1 1 1 11 33
lowQualScore : 1 22 5 3 4 1 55 2222222 2 2 2 00000 33 33333333333333333333333333333333333333333333333333333333333333 555 3333333 3 2 55 3 55 999 55 888888888 444444 3 3 5 6 33 6 3 7 2 7777 8 8 8 8 3 99999 3 8 444 222 3 3 11 777 77777777777777 4444 1111 3 88 66 1 5 1 5 5 5 1 22222222222222 1 5 5 5 66 5 1 1 111 5 5 1 2 999 5 88 5 5 1 1 1 88 1 4444 7 00 3 3 3 7 7 88 5555555 11111 88 7 00000000 999999 3 1 8888888888888888888 7 555555555555555555555555555555 1 3 3 5555555555555555555555555 333 6 5 77 5 5 1 9999 4444 5 1 5 5 000 5 22 88 5 5 9999999999999 88 88 5 5 999999999999999 1 9999 5 888 5 1 1 5 1 5 1 88 1 1 5 1 55 3 000000000000000000000000000000000000 3 1 5 88 1 1 1 5 5 5 1 5 66 5 5 1 1 5 66 1 22 00 1 1 22 1
lowQualScore : . .. . . . . .. ....... . . . ..... .. .............................................................. ... ....... . . .. . .. ... .. ......... ...... . . . . .. . . . . .... . . . . . ..... . . ... ... . . .. ... .............. .... .... . .. .. . . . . . . . .............. . . . . .. . . . ... . . . . ... . .. . . . . . .. . .... . .. . . . . . .. ....... ..... .. . ........ ...... . . ................... . .............................. . . . ......................... ... . . .. . . . .... .... . . . . ... . .. .. . . ............. .. .. . . ............... . .... . ... . . . . . . . .. . . . . .. . .................................... . . . .. . . . . . . . . .. . . . . . .. . .. .. . . .. .
lowQualScore : 0 22 0 5 4 4 55 7777777 9 9 9 55555 99 88888888888888888888888888888888888888888888888888888888888888 444 4444444 1 3 44 3 55 444 55 000000000 444444 4 2 7 7 88 5 2 0 5 0000 0 0 0 0 2 00000 8 0 000 000 2 2 88 555 11111111111111 3333 3333 3 33 00 0 0 0 0 0 5 0 55555555555555 0 0 0 5 55 5 0 0 000 0 5 0 5 000 5 00 5 5 0 0 0 55 0 5555 3 77 3 3 3 3 3 33 0000000 00000 33 3 77777777 333333 3 0 0000000000000000000 3 000000000000000000000000000000 0 3 3 3333333333333333333333333 333 7 5 55 5 5 0 0000 0000 0 0 5 0 555 5 00 55 5 0 0000000000000 00 00 5 0 000000000000000 0 5555 5 555 0 0 0 5 0 5 0 55 0 0 5 0 33 3 333333333333333333333333333333333333 7 0 0 00 0 0 0 5 0 5 0 0 00 5 0 0 0 0 00 0 00 55 0 0 00 0
consensus : AAGNTTTGTATCAATTT-TTAGCTCACC--TGAGCCG-----AAGGCTCA-AGT-G-AGCTTTTCTGT-GATCAA--AATT---------TGT--------C-GTT------TC-----TG----TCGTC------G------TCG---TTGTC-G-TA--A-AAC-TTT-T--CAC-A-TT--T-CA---T--TCTTCT------CGAGAACCAC-TGG-CC--AAATTCAACCAAACTTTGGT----ACAAATCA-CC-TT-GG-GTGAAGGGGATTCAAA-T--TTGTTCAAA-TG---AGGGACCNN-GCCCCATCAAAGGGGAGATAATCACGAAAATGCAAAAATAGGGTGGTGTCATTTAAAAATCTTCT---CAAGA--AC---TGGGC--CAAAGCTG-AAAATT-T--ATGAAAG-CTTCCTGA--TATNCGNGGAGATTCAAGGTTTGTTCNAATCATGACCCCCCGGGGGTACGGTGGGGCCACAATAGGGGATCAAAGTTTTACATGCGGATTATATAGGGGAANTCTTCTTGAAAATCTTCTTCTCTNAAGAACGCACTGGGCCAGGAAAGCTGAAATTTCATATNGAAAGCTTCCTGATGTTAGNGGAGATNCAAAGTGTTGTGTTCAAATCATGACCNCCCGGGGTACGANTGGGGGCCACAATTAGGGGTCAAAAGTTTTACATGTGGATACATATAGGGAAATCNTTAAAAATCTTCTTNTNAAGAACCACTATGGGCCAGGANAGCTGAAATTTATATGAAAGCTTCCTGATATAGAGTGGAGATT-CAA-GT-TTG-TTCAAAATCATGA--CCCGGG---ACTACGGT-GGGCCA--CAATAG-GGGA---TCAAAGTTT--TACACGTGTATATA-AGANAAATCT-TCAAAA----------CCTCTCAAGAACCACTGGGGCAGA------AAAACTG----AAATTT-T-----ATGNAAGC-TTCCTGA-TATTG--TGGGAGGAT------T--AG---TTGTTCAAAT---CATGGACCCCGGAGGGTGGACTGATGGTGGCCNCAAGCAGGGGATCAAGGTTTTGCATGTNTATATCATGATGTGTATATANNGGGTAAGAATCTTTTTAAAAAGATCTTTCTTCACGTACACAAGCTAACCACTTTGGGCTCAGGAGAAGCTTGAAGGTNTNTAAGCNTGGAACGNNTTCCTGATATAGNGGGTACGATTCAAGTTTGNTCAGATCATGACCCCCGGGTAACGTAGTGGGGCCCCAATGACAGGAATCAATTGAGGTTAGCATACTGATATAATATATAGGGAGAATATCTTACAAAAATCTTTCTATTTCAAGATACCACTGGGGCCAGGAAATGTGAAAATTTTATATGGAAGCGGGTTGCCTTGAATATAGAAGGAGATTACCAGTTTGTGTCAAAAATCATGACCCCCGAGGAGCTCGGTTACTATGGGGCCCATTAGGGGATCCAAAGTTTTACATATGATTATATAGGAAAAAATCTTNAAAATCCTCTTTCTCAAGAANCACTGGGCCAGAAAGANGAAATATTTATNTNGGAGCTTCCTGATATGGAGNAGATTCAAGTTTGG-TTCAAA-TCA----------------------TGACCC--------CCGGGGNTAGGGTGGGGCCACAAGTANGGGATNAAGGTTTTACATGNCGGAATATATCATAGGGAAAATCTTTAAAAATCTTCTTCTCAAGAACCGCCCTGCGGCGAGGAAAGCTGGAAATTTATATGAAATCTTACNTGATATAGTGGAGATGNTTCAAGTTTTGTTCAAATCATGACCGCTNGGGGTANGGCGGAGCNCNAACTANNGGATCAAAGTTTTACATNCAGATATATNGANNGATTNTTTAAAAATCTTTTTCGAGATTGAACCAGGAAGATTATGTTTTACCGAAGACTTCTGACTATGCGTAGATTTAAGGTGGTTCAGATTA
Reference ( family-85 ) : AAGNTTTGTATCAATTT-TTAGCTCACC--TGAGCCG-----AAGGCTCA-AGT-G-AGCTTTTCTGT-GATCAA--AATT---------TGT--------C-GTT------TC-----TG----TCGTC------G------TCG---TTGTC-G-TA--A-AAC-TTT-T--CAC-A-TT--T-CA---T--TCTTCT------CGAGAACCAC-TGG-CC--AAATTCAACCAAACTTTGGT----ACAAATCA-CC-TT-GG-GTGAAGGGGATTCAAA-T--TTGTTCAAA-TG---AGGGACCNN-GCCCCATCAAAGGGGAGATAATCACGAAAATGCAAAAATAGGGTGGTGTCATTTAAAAATCTTCT---CAAGA--AC---TGGGC--CAAAGCTG-AAAATT-T--ATGAAAG-CTTCCTGA--TATNCGNGGAGATTCAAGGTTTGTTCNAATCATGACCCCCCGGGGGTACGGTGGGGCCACAATAGGGGATCAAAGTTTTACATGCGGATTATATAGGGGAANTCTTCTTGAAAATCTTCTTCTCTNAAGAACGCACTGGGCCAGGAAAGCTGAAATTTCATATNGAAAGCTTCCTGATGTTAGNGGAGATNCAAAGTGTTGTGTTCAAATCATGACCNCCCGGGGTACGANTGGGGGCCACAATTAGGGGTCAAAAGTTTTACATGTGGATACATATAGGGAAATCNTTAAAAATCTTCTTNTNAAGAACCACTATGGGCCAGGANAGCTGAAATTTATATGAAAGCTTCCTGATATAGAGTGGAGATT-CAA-GT-TTG-TTCAAAATCATGA--CCCGGG---ACTACGGT-GGGCCA--CAATAG-GGGA---TCAAAGTTT--TACACGTGTATATA-AGANAAATCT-TCAAAA----------CCTCTCAAGAACCACTGGGGCAGA------AAAACTG----AAATTT-T-----ATGNAAGC-TTCCTGA-TATTG--TGGGAGGAT------T--AG---TTGTTCAAAT---CATGGACCCCGGAGGGTGGACTGATGGTGGCCNCAAGCAGGGGATCAAGGTTTTGCATGTNTATATCATGATGTGTATATANNGGGTAAGAATCTTTTTAAAAAGATCTTTCTTCACGTACACAAGCTAACCACTTTGGGCTCAGGAGAAGCTTGAAGGTNTNTAAGCNTGGAACGNNTTCCTGATATAGNGGGTACGATTCAAGTTTGNTCAGATCATGACCCCCGGGTAACGTAGTGGGGCCCCAATGACAGGAATCAATTGAGGTTAGCATACTGATATAATATATAGGGAGAATATCTTACAAAAATCTTTCTATTTCAAGATACCACTGGGGCCAGGAAATGTGAAAATTTTATATGGAAGCGGGTTGCCTTGAATATAGAAGGAGATTACCAGTTTGTGTCAAAAATCATGACCCCCGAGGAGCTCGGTTACTATGGGGCCCATTAGGGGATCCAAAGTTTTACATATGATTATATAGGAAAAAATCTTNAAAATCCTCTTTCTCAAGAANCACTGGGCCAGAAAGANGAAATATTTATNTNGGAGCTTCCTGATATGGAGNAGATTCAAGTTTGG-TTCAAA-TCA----------------------TGACCC--------CCGGGGNTAGGGTGGGGCCACAAGTANGGGATNAAGGTTTTACATGNCGGAATATATCATAGGGAAAATCTTTAAAAATCTTCTTCTCAAGAACCGCCCTGCGGCGAGGAAAGCTGGAAATTTATATGAAATCTTACNTGATATAGTGGAGATGNTTCAAGTTTTGTTCAAATCATGACCGCTNGGGGTANGGCGGAGCNCNAACTANNGGATCAAAGTTTTACATNCAGATATATNGANNGATTNTTTAAAAATCTTTTTCGAGATTGAACCAGGAAGATTATGTTTTACCGAAGACTTCTGACTATGCGTAGATTTAAGGTGGTTCAGATTA
gi|1 : AAACTTCATAT-ATTTT-TTAGCTCACC--TGAGCCG-----AAGGCTCATAGT-G-ATCTTTTCTGTTGATCAA--AATT---------TGT--------C-GTTGG----TC-----TG----TCGTC------G------TCG---TTGTC-G-TA--A-AACGTTT-T--CAC-A-TT--T-CAA--T--TCTTCT------CAAGA-CCAC-TGG-TC--AAATTCAACCAAACTTTGGT----ACACATCA-CC-TT-GG-GTGAAGGGGCTTCAA--T--TTGT-CAAA-TGGGAAGGGACCAG-GCCTCACCAAAGGGGAGATAATCATGAAAATGCAAAAATAGGG--GTGTATTTTAAAAATCTTCTTCTCAAGACCAC---TGGGCAGCAAAGCTGGAAAATT-A--ATGGAAGGCTTCCTGAAATATACGAGGAGATTCAAGGTTTGTTCAAATCATGACCCCCCGGGGGTACGATGGGGCCA-AATAGGGGATCAAAGTTTTACATACGGATTATATAGGAGAAATCTTCTTAAAAATCTTCTTCTCTCAAGAACGCACTAGGCCAGGAAA-CTGAAATTTTATATTGAAAGCTTCCTGATGTTAGAGGAGATGTAAAGTGTTGTGTTCAAATC-TGACCCCCCGGGGTACGATTGGAGGCCACAATTAGGGATCAAA--TTTTACATG-AGATATATATAGGGAAATCTTTAAAAATCTTCTTCTCAAGAACCACTATGGGCCAGGAAAGCTGAAATTTATATGAAAGCTTCCTGAT-TAGAG-GGAGATTACAAAGTGTTG-TTCAAAATCATGA--CCCGGGGGTACTATGGT-GGGCCATTCAATAGTGGGAAGGTCCAAATTGGGTACATGAGTATATAGAGATAAATCT-TTAAAAATGCTTCTTTCTTCTCAAGAACCACTGGGCCAGG------TAAACTGCTGAAAATTT-TTAATAGTGAAAGC-GTTCTGA-TATTAGATGGGAGGATAGTGCAT--AGGGTTTGTTCAAATGTGCATGGACGCCGGAGGGTGGACTGATGGTGGCCCCAAGTAGGGGATCAAG----TGCAT-TTTA-ATCATGAT---TAT-TAGAGGGTAAAAATCTTTT-AAAAAGATCTTTCTTCACGTACATAAGCTAACCACTTTGGGCTCAGGA-AAGCTTGAAGGTTTG--AGTATGGAACGGCTTCCTGA-ATAGTGGGTACGATTCAAGTTTGTTCAAATCATGACCCCCGGGTAACGTAGTGGGGCCCCAATGACAGGAATCAATTGAGGTTAGCATACTGATATAATATATAGGGAGAATATCTTACAAAAATCTTTCTATTTCAAGATACCACTGGGGCCAGGAAATGTGAAAATTTTATATGGAAGCGGGTTGCCTTGAATATAGAAGGAGATTACCAGTTTGTGTCAAAAATCATGACCCCCGAGGAGCTCGGTTACTATGGGGCCCATTAGGGGATCCAAAGTTTTACATATGATTATATAGGAAAAAATCTTAAAAATCTTCTTTTTCAAGAACCACTGGGCCAGAAAGATGAA--ATTTATATTGGAGCTTCCTGATATAGAGGAGATTCAAGTTTGA-TTCAAA-TCA-----------------------GACCC--------CCGGGGGTATGAT-GGGCCACA--TAGGGGATCAAAGTTTTACATGCCAGAAT-TATCATAGAGAAAATCTTTAAAAATCTTCTTCTCAAGAACCGCCCTGCGGCGAGGAAAGCTGGAAATTTATATGAAATCTT-CGT-ATATAGTGGAGATGGTTCAAGTTTTGTTCAAATCATGATC-CTCGGGGTATGAT-GAGCCCCAATTAGGGGATCAAAG-TTTACATGCAGATATATAGAGAAATTCTTTAAAAATCTTTTTCGAGATTGAACCAGGAAGATTATGTTTTACCGAAGACTTCTGACTATGCGTAGATTTAAGGTGGTTCAGATTA
gi|10 : CTTACCTGATATAGTGGAGAT-TTTCAAGTTT-GTTCAAATCATGACCGCTGGAGATAGGGCGGAG-ACAAACTATTGGATCAAA-TTTTACATTCAAATATATTGATTGATTGTTTaatgcctccaccga
gi|11 : ggT-TTAGCTCACC--TGAAACATTTACAAAGCTCA-CGT-G-ATCTCCTC--T-GATCAG--TATT---------TTT--------C----------TC-----TG----TCGTC------A------TT-------TC----A--A-AAC--TA-T--CAT-G-TT--T------T--TCCTTT------AAAAAATCAC-TG
gi|12 : ttgATTG-TTAATTCATC--TGAGATT-----AAAGCTGA-AGT-G-AATTTTTTCA--GATCAA--AGTTGTGTATACATGT--------A-CTC------TC-----TGATTCTTGTT------G------TTG---TTGTC-A-T---T-AAC-TTatc
gi|13 : TAGCTCAAT--AGAGTGA-----AAGGGTTA-GAT-G-AGCTTTC---T-GATTAA--A-----------------------------------C-----TG----TCTTC------G------TTG---T-----------A-AAT-GTT-T--CAC-ATTT--T-CATTGT--TCTTTT------CCAGAACTA
gi|14 : ttgcTTG-TTAATTCATC--TGAGATT-----AAAGCTGA-AGT-G-AATTTTTCAG---ATCAA--AGTTGTGTATACATGT--------A-CTC------TC-----TGATTCTTGTT------G------TTG---TTGTC-A-T---T-AAC-TTT-a
gi|15 : CTCA-CCT-G-AG-TCTTCTG---ATCAG--AATT---------TGTGCCTTGTTT-GTTGGTG--TCAACAGTG----TTGTC------AGTGGCATCA---TTGAC-G-TA--A-A-C-TTT-T--CACAA-TT--T-CA---T--
gi|16 : CTCA-CCT-G-AG-TCTTCTG---ATCAG--AATT---------TGTGCCTTGTTT-GTTGGTG--TCAACAGTG----TTGTC------AGTGGCATCA---TTGAC-G-TA--A-A-C-TTT-T--CACAA-TT--T-CA---T--ct
gi|17 : GATCCA-----AAAGCTCA-AGT-G-AAC-TATCTAT---TTGA--AATT---------TAT--------CAGTTG-----TC-----T-----TCGTCCTTCTTG------TCGCTTTTGTC-G-T---A-AAC-TTT-ct
gi|18 : AAGGTTTG-ATCA-TTT-TTAGCTTACT--TGAGCTA-----AAAACTCA-AGT-G-AGCTTTTC--T-GATCAC--CTTT---------TGT--------C----------TC-----TG----T
gi|19 : gaagaTTTTATGAATTT---AGCTCACA--AGAGCTG-----AAGGCTTA-AATCC-AGCTTTTC--T-GATCAA--AGTG---------TGT--------C---T------TC-----TA----T
gi|2 : AAGTTTTATATCAATTA-TTAACTCACC--TGAGCAG-----AAGGCTCA-AGT-G-AGCTATTCTG---ATCAA--AATT---------TGT--------CCATTA-----TC-----TG----TCGTC------G------TTG---TTGTT-G-TTGTA-AAC-TTT-T--CAC-A-TT--TTCA---TCTTGTTCT------CCAGAACCAG-TGGGCC--AAATTCAAACAAAACTTGGT----ACAAATCA-TC-TTTAA-GT-AAGTGGATTCAAT-T--TTTTTCAAA-TG---AAGAACCTGAGCCCCTTAAAAGGGGATATAATCACGAAAATGCAAAAATAGGGTGGTGTCATTTAAAAATCTTCT---CAAGA--ACCACTGGGC--CAGAA--A-AGAATT-TCTATGAAAG-CTTCTTGA--TATT-GTGGAGATTCAAG-TTTGTTCTAATCATGACCCCC-GGGGGTACGGTGGGGCCACAATAGGGGATCAAAGTTTTACATGTGAAT-ATATAGGGGAACTCTTCTTG--------------TGAAGAAC-CACTGGGTCAGAAAAGCTGAAATT-CATA-AGAAAGCTTCTTGATAT-AGTGGAGATTCAA---GTT-TGTTCAAATCATGACCACCGAGAATACGAA--GGGGCCACA-TTAGGGGTTAAAAGTTTTATATGTGAATACATAT-GGAAAATCGTTAAAAATCTTCTTGTGAAGAACCACT--GGGCTAGAATAGCTGAAATTTATATGAAAGCTTCCTGATAT--AGTGGAGATT-CAA-GT-TTG-TTT-AAATCATGACTCCCGGG---AGTACGGTGGGGCCA--CAATAG-GGGA---TCAAAGTTT--TACACGTGTATATA-AGAAAAATCT-T-------------------TCAAGAACCACTGGGGCAGA------AAAACTG----AAATTTAT-----ATGGAAGA-TTCCTGA-TGTAG--TGGAA-------------AG---TTGGTCAAAT---CAT-GATCCCGG-GGGT--AC-GATGG-GGCCACAA-CA-GGGATCAAAGTTTTACATGTGTATAT-ATGATGTGTATATATCGGG--AGAATCTTTTTAAAAA-ATCT-------------CAAG--AACTA--TTGGAC-CAGAAGAAAC---AA--TATCTAA-CCTAAAA--TATTCTTGATATAGA--GTA-GATTCAAGTTTGGTCAGATCATGACCCTCttg
gi|20 : gaTTTGTATCAATGTATTAACTCACC--TGAGCCA-----AAGGCTTC-AAT-G-AGCatcccggttgaagggtgatgct
gi|21 : GATTCAAGTTTG---TCAAAATCA----------------------TGACTC--------CTGGGTATAGGGT
gi|22 : TGCAAAAGTAGGGTGGGGTCATTTAAAAA---TAT---CAAGA--AC---aag
gi|3 : TTTAAAATCCTCTT-CTCAAGAAAC-CTGAACCAAAAAAAAAAAATATTTATCTGAAAGCTTCCTG-TATGGAGTATATTTAAGTTTGGGTTCAGA-TCACCCTCCCGCACCCCCCCCAATATGACCCATTTTTTACAAGGGTTAGGGTGGGGCCACAAGTATGGAATAAAGGTTTTACATAACGAAATATAT-ATAGGGAAAATTTT
gi|4 : TTT-TTA-CTGAACAATGAGCCA-----AAGACTCA-GGT-GTAACTGTTCTG---ATCAACAAAAT---------CAA--------C-GCT------T-------G----TCG--------G------TCG---TGATC-T-TA--G-AAC-GTTGT--CAC-A-TT--T---------TCTTCTGCGCTCCGAGA-CCAT-TGG-CCAAAAATT-AACAAAAC--TGGTAAAGACAAATTT-CG-TT-GGAGTGATCGGGATTTCAA-CGGTTGTTTAAAGTG---A
gi|5 : -AGT-G-AGCTTTTC--T-GATCAA--AACTA--------TAT--------T-GTCCAGCCATC-----TG----TTGTT------GGCAACCTTG---TCATC-GATT--A-AAC-ATT-TAGCAC---TT--T-CACC-T--TATCCT------AGATAAGCAG-TGG-Catgcgggccag
gi|6 : cttgcatgatggtttagtatcaactcaggctctaaacttaacTGTAGAT--CAA-AT-TTGGTTCACA-TGATGA--CC-------ACCA-----GAGCCA--C--TAG-TG-----TTAAA-TGT--TGCACGTAAATACT-GGACAATTCTATCAAAA----------TCTCGCA-GAACCACAGGGGTATATTTTGTAAAA--------------T-----ATGCCAGCATTCTTAAGTATTG--T----AGAT------TAAAG---TTGTTCTCAC---CATGGCCCtgctaattattatcattctcaaaaaatgcacaaatatcatta
gi|7 : tgtaT-GGTCAA--AATT---------CGT--------C-CCTCG----TC-----CA----TTATCAGT---G------TCA---TTATT-G-TA--ATAAA-T-------AG-A----------------CTTCT------CGAGAATCACATGG-TC--AATTCTAACCAA-CTTCC-T----ACAAAGCA-TCATT-GG-GTACAGGGTATTCAAAAT--TTGTCCAAA-GG---AGAGACCAT-GTC
gi|8 : ttgc----ACAAATCATCC-TT-GA-TTGAAGGGGACTCAAA-T--GTGTTCAAA-TG---AAGGACTTT-GCTCTATCAAAGGAGAGATAATCACGAAAATACAAAAACAGGGTGGTATCAT---------TTCT---CAAGA--A--------C--CAAAGCTG-AAATTTGT--ATGAAAG-ATACCTGA--t
gi|9 : ---TTGTCTG-TA--A-A----TT-T--CAC-A-TTTCT-CATC-T--TGTTCT------CCCAAACCAC-TGA-C
blockSeqs : G TT C A A G AA CATTTAC . C T CAG CA TGTGCCTTGTTTGTTGGTGTCAACAGTGTTGTCAGTGGCA CTT GTTGT T A T G AG AT TC CATTGT GCGCTC A A A G AA C A C G AAAG T A T A G ACGG T G . TGA T T TC . ACCACTGGGC CTG TCT . . T T . T . C . C . G . G . A . T T . . A A G A . AG T . G G G . T AT T T . . G A A CT CGGG CGGTG . A GGGA GTTT . A ATCAAAATC A AAAACTGAAATTTAT G A G TAGATTAAAG . G . . . . A CA GTTT G G T . GTG A TC . T . . . . . G AATATCTAA C TA T A . G T . A . A AT C G . T GG A CCCTCCCGCACCCCCCCCAATATGACCCATTTTTTA T A G AG T A A A . A C G T . G G G G A A TT T T T TT G
blockSeqs : T AT G A . A . TT . . . TAT . TGTGCCTTGTTTGTTGGTGTCAACAGTGTTGTCAGTGGCA . GATT . A G . . AA . TCATCT . C A . . . T A T G . . . . . A AAT T . . AT T T . . AC A GT . . T . . . . . . . . . . . TG TGT . C T . TTTTGTAAAAT C . . TGGAAAG . . . . TGACTC A T
blockSeqs : GT C A . G . GA . . . TG . GTGTATACATGTACTCTCTGATTCTTGTTG . TGTA . A T . . AA . CACCT . C A . . . . . . . . . . . . G TT C . . TT T . . .
blockSeqs : G C A . A . TT . . . TG . GTGTATACATGTACTCTCTGATTCTTGTTG . GTA . A T . . G . CATCT . G A . . . . . . . . AT T . .
blockSeqs : . . G . CA . . . AG . ATATTGTCCAGCCATCTGTTGTTGGCAACC . GTA . A T . . A . CAT . G A . .
blockSeqs : . G . TA . . . TG . TATCAGTTGTCTTCGTCCTTCTTG . TTA . A T . . A . CAT . G A .
blockSeqs : . A . TG . . . TG . CGTCCCTCGTCCATTATCAGTG . GTA . A T . . A . T . C .
blockSeqs : . A . AG . . . TG . TGTCCATTATCTGTCGTCG . AT . A G . . A . .
blockSeqs : . . CA . . . TG . TTTCTCTGTCGTCA . AT . A A . . . . .
blockSeqs : CA . . . TG . CAACGCTTGTCGG . GT . . T .
blockSeqs : . . . TG . CTGTCTTCG . A . . . .
blockSeqs : . . . TG . . . . . .
blockSeqs : . . . .
blockSeqCons : TG*** T* CAT****** AT*** ***
originalCons : AAGNTTTGTATCAATTT-TTAGCTCACC--TGAGCCG-----AAGGCTCA-AGT-G-AGCTTTTCTGT-GATCAA--AATT---------TGT--------C-GTT------TC-----TG----TCGTC------G------TCG---TTGTC-G-TA--A-AAC-TTT-T--CAC-A-TT--T-CA---T--TCTTCT------CGAGAACCAC-TGG-CC--AAATTCAACCAAACTTTGGT----ACAAATCA-CC-TT-GG-GTGAAGGGGATTCAAA-T--TTGTTCAAA-TG---AGGGACCNN-GCCCCATCAAAGGGGAGATAATCACGAAAATGCAAAAATAGGGTGGTGTCATTTAAAAATCTTCT---CAAGA--AC---TGGGC--CAAAGCTG-AAAATT-T--ATGAAAG-CTTCCTGA--TATNCGNGGAGATTCAAGGTTTGTTCNAATCATGACCCCCCGGGGGTACGGTGGGGCCACAATAGGGGATCAAAGTTTTACATGCGGATTATATAGGGGAANTCTTCTTGAAAATCTTCTTCTCTNAAGAACGCACTGGGCCAGGAAAGCTGAAATTTCATATNGAAAGCTTCCTGATGTTAGNGGAGATNCAAAGTGTTGTGTTCAAATCATGACCNCCCGGGGTACGANTGGGGGCCACAATTAGGGGTCAAAAGTTTTACATGTGGATACATATAGGGAAATCNTTAAAAATCTTCTTNTNAAGAACCACTATGGGCCAGGANAGCTGAAATTTATATGAAAGCTTCCTGATATAGAGTGGAGATT-CAA-GT-TTG-TTCAAAATCATGA--CCCGGG---ACTACGGT-GGGCCA--CAATAG-GGGA---TCAAAGTTT--TACACGTGTATATA-AGANAAATCT-TCAAAA----------CCTCTCAAGAACCACTGGGGCAGA------AAAACTG----AAATTT-T-----ATGNAAGC-TTCCTGA-TATTG--TGGGAGGAT------T--AG---TTGTTCAAAT---CATGGACCCCGGAGGGTGGACTGATGGTGGCCNCAAGCAGGGGATCAAGGTTTTGCATGTNTATATCATGATGTGTATATANNGGGTAAGAATCTTTTTAAAAAGATCTTTCTTCACGTACACAAGCTAACCACTTTGGGCTCAGGAGAAGCTTGAAGGTNTNTAAGCNTGGAACGNNTTCCTGATATAGNGGGTACGATTCAAGTTTGNTCAGATCATGACCCCCGGGTAACGTAGTGGGGCCCCAATGACAGGAATCAATTGAGGTTAGCATACTGATATAATATATAGGGAGAATATCTTACAAAAATCTTTCTATTTCAAGATACCACTGGGGCCAGGAAATGTGAAAATTTTATATGGAAGCGGGTTGCCTTGAATATAGAAGGAGATTACCAGTTTGTGTCAAAAATCATGACCCCCGAGGAGCTCGGTTACTATGGGGCCCATTAGGGGATCCAAAGTTTTACATATGATTATATAGGAAAAAATCTTNAAAATCCTCTTTCTCAAGAANCACTGGGCCAGAAAGANGAAATATTTATNTNGGAGCTTCCTGATATGGAGNAGATTCAAGTTTGG-TTCAAA-TCA----------------------TGACCC--------CCGGGGNTAGGGTGGGGCCACAAGTANGGGATNAAGGTTTTACATGNCGGAATATATCATAGGGAAAATCTTTAAAAATCTTCTTCTCAAGAACCGCCCTGCGGCGAGGAAAGCTGGAAATTTATATGAAATCTTACNTGATATAGTGGAGATGNTTCAAGTTTTGTTCAAATCATGACCGCTNGGGGTANGGCGGAGCNCNAACTANNGGATCAAAGTTTTACATNCAGATATATNGANNGATTNTTTAAAAATCTTTTTCGAGATTGAACCAGGAAGATTATGTTTTACCGAAGACTTCTGACTATGCGTAGATTTAAGGTGGTTCAGATTA
finalCons : AAGNTTTGTATCAATTT-TTAGCTCACC--TGAGCCG-----AAGGCTCA-AGT-G-AGCTTTTCTG---ATCAA--AATT---------TGT--------C-GTT------TC-----TG----TCGTC------G------TCG---TTGTC-G-TA--A-AACT-TT-T--CAC-A-TT--TCAT------TCTTCT------CGAGAACCAC-TGG-CC--AAATTCAACCAAACTTTGGT----ACAAATCA-CC-TT-GG-GTGAAGGGGATTCAAAT---TTGTTCAAA-TG---AGGGACCNN-GCCCCATCAAAGGGGAGATAATCACGAAAATGCAAAAATAGGGTGGTGTCATTTAAAAATCTTCT---CAAGA--AC---TGGGC--CAAAGCTG-AAAATT-T--ATGAAAG-CTTCCTGA--TATNCGNGGAGATTCAAGGTTTGTTCNAATCATGACCCCCCGGGGGTACGGTGGGGCCACAATAGGGGATCAAAGTTTTACATGCGGATTATATAGGGGAANTCTTCTTGAAAATCTTCTTCTCTNAAGAACGCACTGGGCCAGGAAAGCTGAAATTTCATATNGAAAGCTTCCTGATGTTAGNGGAGATNCAAAGTGTTGTGTTCAAATCATGACCNCCCGGGGTACGANTGGGGGCCACAATTAGGGGTCAAAAGTTTTACATGTGGATACATATAGGGAAATCNTTAAAAATCTTCTTNTNAAGAACCACTATGGGCCAGGANAGCTGAAATTTATATGAAAGCTTCCTGATATAGAGTGGAGATT-CAA-GT-TTG-TTCAAAATCATGA--CCCGGG---ACTACGGT-GGGCCA--CAATAG-GGGA---TCAAAGTTT--TACACGTGTATATA-AGANAAATCT-TCAAAA----------CCTCTCAAGAACCACTGGGGCAGA------AAAACTG----AAATTT-T-----ATGNAAGC-TTCCTGA-TATTG--TGGGAGGAT------T--AG---TTGTTCAAAT---CATGGACCCCGGAGGGTGGACTGATGGTGGCCNCAAGCAGGGGATCAAGGTTTTGCATGTNTATATCATGATGTGTATATANNGGGTAAGAATCTTTTTAAAAAGATCTTTCTTCACGTACACAAGCTAACCACTTTGGGCTCAGGAGAAGCTTGAAGGTNTNTAAGCNTGGAACGNNTTCCTGATATAGNGGGTACGATTCAAGTTTGNTCAGATCATGACCCCCGGGTAACGTAGTGGGGCCCCAATGACAGGAATCAATTGAGGTTAGCATACTGATATAATATATAGGGAGAATATCTTACAAAAATCTTTCTATTTCAAGATACCACTGGGGCCAGGAAATGTGAAAATTTTATATGGAAGCGGGTTGCCTTGAATATAGAAGGAGATTACCAGTTTGTGTCAAAAATCATGACCCCCGAGGAGCTCGGTTACTATGGGGCCCATTAGGGGATCCAAAGTTTTACATATGATTATATAGGAAAAAATCTTNAAAATCCTCTTTCTCAAGAANCACTGGGCCAGAAAGANGAAATATTTATNTNGGAGCTTCCTGATATGGAGNAGATTCAAGTTTGG-TTCAAA-TCA----------------------TGACCC--------CCGGGGNTAGGGTGGGGCCACAAGTANGGGATNAAGGTTTTACATGNCGGAATATATCATAGGGAAAATCTTTAAAAATCTTCTTCTCAAGAACCGCCCTGCGGCGAGGAAAGCTGGAAATTTATATGAAATCTTACNTGATATAGTGGAGATGNTTCAAGTTTTGTTCAAATCATGACCGCTNGGGGTANGGCGGAGCNCNAACTANNGGATCAAAGTTTTACATNCAGATATATNGANNGATTNTTTAAAAATCTTTTTCGAGATTGAACCAGGAAGATTATGTTTTACCGAAGACTTCTGACTATGCGTAGATTTAAGGTGGTTCAGATTA
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 111111111111111111111111111111111111
lowQualScore : 111111 0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 222222222 111111 11 1111 11111 111 111 11 111 22222222222222 1111 3333 1 11 11 1 1 1 1 55555555555555 1 1 1 11 1 222 1 1 111 1 11 1 1 11 2222 22 1 1 1 11 2222222 22222 11 33333333 111111 1 7777777777777777777 777777777777777777777777777777 1 1 8888888888888888888888888 222 1 11 1 1 1111 2222 1 1 1 222 1 11 1 1 4444444444444 11 11 1 1 222222222222222 1111 1 111 1 1 1 11 1 22 1 333333333333333333333333333333333333 1 11 1 1 1 1 11 1 1 1 11 33
lowQualScore : 1 22 5 3 4 1 55 777777 444 2 2 2 444 33 0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 3 55 3 55 999 55 888888888 444444 3 3 5 6 33 6 3 7 2 7777 8 8 8 8 3 99999 3 8 444 222 3 3 11 777 77777777777777 4444 1111 3 88 66 1 5 1 5 5 5 1 22222222222222 1 5 5 5 66 5 1 1 111 5 5 1 2 999 5 88 5 5 1 1 1 88 1 4444 7 00 3 3 3 7 7 88 5555555 11111 88 7 00000000 999999 3 1 8888888888888888888 7 555555555555555555555555555555 1 3 3 5555555555555555555555555 333 6 5 77 5 5 1 9999 4444 5 1 5 5 000 5 22 88 5 5 9999999999999 88 88 5 5 999999999999999 1 9999 5 888 5 1 1 5 1 5 1 88 1 1 5 1 55 3 000000000000000000000000000000000000 3 1 5 88 1 1 1 5 5 5 1 5 66 5 5 1 1 5 66 1 22 00 1 1 22 1
lowQualScore : . .. . . . . .. ...... ... . . . ... .. ................................................................................................. . .. . .. ... .. ......... ...... . . . . .. . . . . .... . . . . . ..... . . ... ... . . .. ... .............. .... .... . .. .. . . . . . . . .............. . . . . .. . . . ... . . . . ... . .. . . . . . .. . .... . .. . . . . . .. ....... ..... .. . ........ ...... . . ................... . .............................. . . . ......................... ... . . .. . . . .... .... . . . . ... . .. .. . . ............. .. .. . . ............... . .... . ... . . . . . . . .. . . . . .. . .................................... . . . .. . . . . . . . . .. . . . . . .. . .. .. . . .. .
lowQualScore : 0 22 0 5 4 4 00 222222 777 7 7 7 777 77 9999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 1 44 3 55 444 55 000000000 444444 4 2 7 7 88 5 2 0 5 0000 0 0 0 0 2 00000 8 0 000 000 2 2 88 555 11111111111111 3333 3333 3 33 00 0 0 0 0 0 5 0 55555555555555 0 0 0 5 55 5 0 0 000 0 5 0 5 000 5 00 5 5 0 0 0 55 0 5555 3 77 3 3 3 3 3 33 0000000 00000 33 3 77777777 333333 3 0 0000000000000000000 3 000000000000000000000000000000 0 3 3 3333333333333333333333333 333 7 5 55 5 5 0 0000 0000 0 0 5 0 555 5 00 55 5 0 0000000000000 00 00 5 0 000000000000000 0 5555 5 555 0 0 0 5 0 5 0 55 0 0 5 0 33 3 333333333333333333333333333333333333 7 0 0 00 0 0 0 5 0 5 0 0 00 5 0 0 0 0 00 0 00 55 0 0 00 0
consensus : AAGNTTTGTATCAATTT-TTAGCTCACC--TGAGCCG-----AAGGCTCA-A-GT-G-AGCTTTT-CTG---ATCAA--AAT-----T---------TG----TC-GTT--------TC-----TG----TC---GT------C------G------TC-G------TTGTC-G-T---A-AAC-TTT-T--CAC-A-TT--T-CA---T--TCTTCT------CGAGAACCAC-TGG-CC--AAATTCAACCAAACTTTGGT----ACAAATCA-CC-TT-GG-GTGAAGGGGATTCAAA-T--TTGTTCAAA-TG---AGGGACCNN-GCCCCATCAAAGGGGAGATAATCACGAAAATGCAAAAATAGGGTGGTGTCATTTAAAAATCTTCT---CAAGA--AC---TGGGC--CAAAGCTG-AAAATT-T--ATGAAAG-CTTCCTGA--TATNCGNGGAGATTCAAGGTTTGTTCNAATCATGACCCCCCGGGGGTACGGTGGGGCCACAATAGGGGATCAAAGTTTTACATGCGGATTATATAGGGGAANTCTTCTTGAAAATCTTCTTCTCTNAAGAACGCACTGGGCCAGGAAAGCTGAAATTTCATATNGAAAGCTTCCTGATGTTAGNGGAGATNCAAAGTGTTGTGTTCAAATCATGACCNCCCGGGGTACGANTGGGGGCCACAATTAGGGGTCAAAAGTTTTACATGTGGATACATATAGGGAAATCNTTAAAAATCTTCTTNTNAAGAACCACTATGGGCCAGGANAGCTGAAATTTATATGAAAGCTTCCTGATATAGAGTGGAGATT-CAA-GT-TTG-TTCAAAATCATGA--CCCGGG---ACTACGGT-GGGCCA--CAATAG-GGGA---TCAAAGTTT--TACACGTGTATATA-AGANAAATCT-TCAAAA----------CCTCTCAAGAACCACTGGGGCAGA------AAAACTG----AAATTT-T-----ATGNAAGC-TTCCTGA-TATTG--TGGGAGGAT------T--AG---TTGTTCAAAT---CATGGACCCCGGAGGGTGGACTGATGGTGGCCNCAAGCAGGGGATCAAGGTTTTGCATGTNTATATCATGATGTGTATATANNGGGTAAGAATCTTTTTAAAAAGATCTTTCTTCACGTACACAAGCTAACCACTTTGGGCTCAGGAGAAGCTTGAAGGTNTNTAAGCNTGGAACGNNTTCCTGATATAGNGGGTACGATTCAAGTTTGNTCAGATCATGACCCCCGGGTAACGTAGTGGGGCCCCAATGACAGGAATCAATTGAGGTTAGCATACTGATATAATATATAGGGAGAATATCTTACAAAAATCTTTCTATTTCAAGATACCACTGGGGCCAGGAAATGTGAAAATTTTATATGGAAGCGGGTTGCCTTGAATATAGAAGGAGATTACCAGTTTGTGTCAAAAATCATGACCCCCGAGGAGCTCGGTTACTATGGGGCCCATTAGGGGATCCAAAGTTTTACATATGATTATATAGGAAAAAATCTTNAAAATCCTCTTTCTCAAGAANCACTGGGCCAGAAAGANGAAATATTTATNTNGGAGCTTCCTGATATGGAGNAGATTCAAGTTTGG-TTCAAA-TCA----------------------TGACCC--------CCGGGGNTAGGGTGGGGCCACAAGTANGGGATNAAGGTTTTACATGNCGGAATATATCATAGGGAAAATCTTTAAAAATCTTCTTCTCAAGAACCGCCCTGCGGCGAGGAAAGCTGGAAATTTATATGAAATCTTACNTGATATAGTGGAGATGNTTCAAGTTTTGTTCAAATCATGACCGCTNGGGGTANGGCGGAGCNCNAACTANNGGATCAAAGTTTTACATNCAGATATATNGANNGATTNTTTAAAAATCTTTTTCGAGATTGAACCAGGAAGATTATGTTTTACCGAAGACTTCTGACTATGCGTAGATTTAAGGTGGTTCAGATTA
Reference ( family-85 ) : AAGNTTTGTATCAATTT-TTAGCTCACC--TGAGCCG-----AAGGCTCA-A-GT-G-AGCTTTT-CTG---ATCAA--AAT-----T---------TG----TC-GTT--------TC-----TG----TC---GT------C------G------TC-G------TTGTC-G-TA--A-AAC-TTT-T--CAC-A-TT--T-CA---T--TCTTCT------CGAGAACCAC-TGG-CC--AAATTCAACCAAACTTTGGT----ACAAATCA-CC-TT-GG-GTGAAGGGGATTCAAA-T--TTGTTCAAA-TG---AGGGACCNN-GCCCCATCAAAGGGGAGATAATCACGAAAATGCAAAAATAGGGTGGTGTCATTTAAAAATCTTCT---CAAGA--AC---TGGGC--CAAAGCTG-AAAATT-T--ATGAAAG-CTTCCTGA--TATNCGNGGAGATTCAAGGTTTGTTCNAATCATGACCCCCCGGGGGTACGGTGGGGCCACAATAGGGGATCAAAGTTTTACATGCGGATTATATAGGGGAANTCTTCTTGAAAATCTTCTTCTCTNAAGAACGCACTGGGCCAGGAAAGCTGAAATTTCATATNGAAAGCTTCCTGATGTTAGNGGAGATNCAAAGTGTTGTGTTCAAATCATGACCNCCCGGGGTACGANTGGGGGCCACAATTAGGGGTCAAAAGTTTTACATGTGGATACATATAGGGAAATCNTTAAAAATCTTCTTNTNAAGAACCACTATGGGCCAGGANAGCTGAAATTTATATGAAAGCTTCCTGATATAGAGTGGAGATT-CAA-GT-TTG-TTCAAAATCATGA--CCCGGG---ACTACGGT-GGGCCA--CAATAG-GGGA---TCAAAGTTT--TACACGTGTATATA-AGANAAATCT-TCAAAA----------CCTCTCAAGAACCACTGGGGCAGA------AAAACTG----AAATTT-T-----ATGNAAGC-TTCCTGA-TATTG--TGGGAGGAT------T--AG---TTGTTCAAAT---CATGGACCCCGGAGGGTGGACTGATGGTGGCCNCAAGCAGGGGATCAAGGTTTTGCATGTNTATATCATGATGTGTATATANNGGGTAAGAATCTTTTTAAAAAGATCTTTCTTCACGTACACAAGCTAACCACTTTGGGCTCAGGAGAAGCTTGAAGGTNTNTAAGCNTGGAACGNNTTCCTGATATAGNGGGTACGATTCAAGTTTGNTCAGATCATGACCCCCGGGTAACGTAGTGGGGCCCCAATGACAGGAATCAATTGAGGTTAGCATACTGATATAATATATAGGGAGAATATCTTACAAAAATCTTTCTATTTCAAGATACCACTGGGGCCAGGAAATGTGAAAATTTTATATGGAAGCGGGTTGCCTTGAATATAGAAGGAGATTACCAGTTTGTGTCAAAAATCATGACCCCCGAGGAGCTCGGTTACTATGGGGCCCATTAGGGGATCCAAAGTTTTACATATGATTATATAGGAAAAAATCTTNAAAATCCTCTTTCTCAAGAANCACTGGGCCAGAAAGANGAAATATTTATNTNGGAGCTTCCTGATATGGAGNAGATTCAAGTTTGG-TTCAAA-TCA----------------------TGACCC--------CCGGGGNTAGGGTGGGGCCACAAGTANGGGATNAAGGTTTTACATGNCGGAATATATCATAGGGAAAATCTTTAAAAATCTTCTTCTCAAGAACCGCCCTGCGGCGAGGAAAGCTGGAAATTTATATGAAATCTTACNTGATATAGTGGAGATGNTTCAAGTTTTGTTCAAATCATGACCGCTNGGGGTANGGCGGAGCNCNAACTANNGGATCAAAGTTTTACATNCAGATATATNGANNGATTNTTTAAAAATCTTTTTCGAGATTGAACCAGGAAGATTATGTTTTACCGAAGACTTCTGACTATGCGTAGATTTAAGGTGGTTCAGATTA
gi|1 : AAACTTCATAT-ATTTT-TTAGCTCACC--TGAGCCG-----AAGGCTCATA-GT-G-ATCTTTT-CTGTTGATCAA--AAT-----T---------TG----TC-GTTGG------TC-----TG----TC---GT------C------G------TC-G------TTGTC-G-TA--A-AACGTTT-T--CAC-A-TT--T-CAA--T--TCTTCT------CAAGA-CCAC-TGG-TC--AAATTCAACCAAACTTTGGT----ACACATCA-CC-TT-GG-GTGAAGGGGCTTCAA--T--TTGT-CAAA-TGGGAAGGGACCAG-GCCTCACCAAAGGGGAGATAATCATGAAAATGCAAAAATAGGG--GTGTATTTTAAAAATCTTCTTCTCAAGACCAC---TGGGCAGCAAAGCTGGAAAATT-A--ATGGAAGGCTTCCTGAAATATACGAGGAGATTCAAGGTTTGTTCAAATCATGACCCCCCGGGGGTACGATGGGGCCA-AATAGGGGATCAAAGTTTTACATACGGATTATATAGGAGAAATCTTCTTAAAAATCTTCTTCTCTCAAGAACGCACTAGGCCAGGAAA-CTGAAATTTTATATTGAAAGCTTCCTGATGTTAGAGGAGATGTAAAGTGTTGTGTTCAAATC-TGACCCCCCGGGGTACGATTGGAGGCCACAATTAGGGATCAAA--TTTTACATG-AGATATATATAGGGAAATCTTTAAAAATCTTCTTCTCAAGAACCACTATGGGCCAGGAAAGCTGAAATTTATATGAAAGCTTCCTGAT-TAGAG-GGAGATTACAAAGTGTTG-TTCAAAATCATGA--CCCGGGGGTACTATGGT-GGGCCATTCAATAGTGGGAAGGTCCAAATTGGGTACATGAGTATATAGAGATAAATCT-TTAAAAATGCTTCTTTCTTCTCAAGAACCACTGGGCCAGG------TAAACTGCTGAAAATTT-TTAATAGTGAAAGC-GTTCTGA-TATTAGATGGGAGGATAGTGCAT--AGGGTTTGTTCAAATGTGCATGGACGCCGGAGGGTGGACTGATGGTGGCCCCAAGTAGGGGATCAAG----TGCAT-TTTA-ATCATGAT---TAT-TAGAGGGTAAAAATCTTTT-AAAAAGATCTTTCTTCACGTACATAAGCTAACCACTTTGGGCTCAGGA-AAGCTTGAAGGTTTG--AGTATGGAACGGCTTCCTGA-ATAGTGGGTACGATTCAAGTTTGTTCAAATCATGACCCCCGGGTAACGTAGTGGGGCCCCAATGACAGGAATCAATTGAGGTTAGCATACTGATATAATATATAGGGAGAATATCTTACAAAAATCTTTCTATTTCAAGATACCACTGGGGCCAGGAAATGTGAAAATTTTATATGGAAGCGGGTTGCCTTGAATATAGAAGGAGATTACCAGTTTGTGTCAAAAATCATGACCCCCGAGGAGCTCGGTTACTATGGGGCCCATTAGGGGATCCAAAGTTTTACATATGATTATATAGGAAAAAATCTTAAAAATCTTCTTTTTCAAGAACCACTGGGCCAGAAAGATGAA--ATTTATATTGGAGCTTCCTGATATAGAGGAGATTCAAGTTTGA-TTCAAA-TCA-----------------------GACCC--------CCGGGGGTATGAT-GGGCCACA--TAGGGGATCAAAGTTTTACATGCCAGAAT-TATCATAGAGAAAATCTTTAAAAATCTTCTTCTCAAGAACCGCCCTGCGGCGAGGAAAGCTGGAAATTTATATGAAATCTT-CGT-ATATAGTGGAGATGGTTCAAGTTTTGTTCAAATCATGATC-CTCGGGGTATGAT-GAGCCCCAATTAGGGGATCAAAG-TTTACATGCAGATATATAGAGAAATTCTTTAAAAATCTTTTTCGAGATTGAACCAGGAAGATTATGTTTTACCGAAGACTTCTGACTATGCGTAGATTTAAGGTGGTTCAGATTA
gi|10 : CTTACCTGATATAGTGGAGAT-TTTCAAGTTT-GTTCAAATCATGACCGCTGGAGATAGGGCGGAG-ACAAACTATTGGATCAAA-TTTTACATTCAAATATATTGATTGATTGTTTaatgcctccaccga
gi|11 : ggT-TTAGCTCACC--TGAAACATTTACAAAGCTCA-C-GT-G-ATCTCCT-CTG---ATCAG--TAT-----T---------TT----TC------------TC-----TG----TC---GT------C------A------TT-----------TC----A--A-AAC--TA-T--CAT-G-TT--T------T--TCCTTT------AAAAAATCAC-TG
gi|12 : ttgATTG-TTAATTCATC--TGAGATT-----AAAGCTGA-A-GT-G-AATTTTTTCAG---ATCAA--AGT-----TGTGTATACATG----TA-CTC--------TC-----TGATTCTT---GT------T------G------TT-G------TTGTC-A-T---T-AAC-TTatc
gi|13 : TAGCTCAAT--AGAGTGA-----AAGGGTTA-G-AT-G-AGC-TTT-CTG---ATTAA--A--------------------------------------C-----TG----TC---TT------C------G------TT-G------T-----------A-AAT-GTT-T--CAC-ATTT--T-CATTGT--TCTTTT------CCAGAACTA
gi|14 : ttgcTTG-TTAATTCATC--TGAGATT-----AAAGCTGA-A-GT-G-AATTTTT-CAG---ATCAA--AGT-----TGTGTATACATG----TA-CTC--------TC-----TGATTCTT---GT------T------G------TT-G------TTGTC-A-T---T-AAC-TTT-a
gi|15 : CTCA-C-CT-G-AG-TCTT-CTG---ATCAG--AAT-----T---------TGTGCCTT-GTTTGTTGGTGTCAACAGTG----TT---GTCAGTGGC------A------TC-A------TTGAC-G-T---A-AAC-TTT-T--CACAA-TT--T-CA---T--
gi|16 : CTCA-C-CT-G-AG-TCTT-CTG---ATCAG--AAT-----T---------TGTGCCTT-GTTTGTTGGTGTCAACAGTG----TT---GTCAGTGGC------A------TC-A------TTGAC-G-T---A-AAC-TTT-T--CACAA-TT--T-CA---T--ct
gi|17 : GATCCA-----AAAGCTCA-A-GT-G-AAC-TAT-CTA---TTTGA--AAT-----T---------TA----TCAGTTG-------TC-----T-----TC---GT------CCTTCTTG------TC-GCTT---TTGTC-G-T---A-AAC-TTT-ct
gi|18 : AAGGTTTG-ATCA-TTT-TTAGCTTACT--TGAGCTA-----AAAACTCA-A-GT-G-AGCTTTT-CTG---ATCAC--CTT-----T---------TG----TC------------TC-----TG----T
gi|19 : gaagaTTTTATGAATTT---AGCTCACA--AGAGCTG-----AAGGCTTA-A-ATCC-AGCTTTT-CTG---ATCAA--AGT-----G---------TG----TC---T--------TC-----TA----T
gi|2 : AAGTTTTATATCAATTA-TTAACTCACC--TGAGCAG-----AAGGCTCA-A-GT-G-AGCTATT-CTG---ATCAA--AAT-----T---------TG----TCCATTA-------TC-----TG----TC---GT------C------G------TT-G------TTGTT-G-TTGTA-AAC-TTT-T--CAC-A-TT--TTCA---TCTTGTTCT------CCAGAACCAG-TGGGCC--AAATTCAAACAAAACTTGGT----ACAAATCA-TC-TTTAA-GT-AAGTGGATTCAAT-T--TTTTTCAAA-TG---AAGAACCTGAGCCCCTTAAAAGGGGATATAATCACGAAAATGCAAAAATAGGGTGGTGTCATTTAAAAATCTTCT---CAAGA--ACCACTGGGC--CAGAA--A-AGAATT-TCTATGAAAG-CTTCTTGA--TATT-GTGGAGATTCAAG-TTTGTTCTAATCATGACCCCC-GGGGGTACGGTGGGGCCACAATAGGGGATCAAAGTTTTACATGTGAAT-ATATAGGGGAACTCTTCTTG--------------TGAAGAAC-CACTGGGTCAGAAAAGCTGAAATT-CATA-AGAAAGCTTCTTGATAT-AGTGGAGATTCAA---GTT-TGTTCAAATCATGACCACCGAGAATACGAA--GGGGCCACA-TTAGGGGTTAAAAGTTTTATATGTGAATACATAT-GGAAAATCGTTAAAAATCTTCTTGTGAAGAACCACT--GGGCTAGAATAGCTGAAATTTATATGAAAGCTTCCTGATAT--AGTGGAGATT-CAA-GT-TTG-TTT-AAATCATGACTCCCGGG---AGTACGGTGGGGCCA--CAATAG-GGGA---TCAAAGTTT--TACACGTGTATATA-AGAAAAATCT-T-------------------TCAAGAACCACTGGGGCAGA------AAAACTG----AAATTTAT-----ATGGAAGA-TTCCTGA-TGTAG--TGGAA-------------AG---TTGGTCAAAT---CAT-GATCCCGG-GGGT--AC-GATGG-GGCCACAA-CA-GGGATCAAAGTTTTACATGTGTATAT-ATGATGTGTATATATCGGG--AGAATCTTTTTAAAAA-ATCT-------------CAAG--AACTA--TTGGAC-CAGAAGAAAC---AA--TATCTAA-CCTAAAA--TATTCTTGATATAGA--GTA-GATTCAAGTTTGGTCAGATCATGACCCTCttg
gi|20 : gaTTTGTATCAATGTATTAACTCACC--TGAGCCA-----AAGGCTTC-A-AT-G-AGCatcccggttgaagggtgatgct
gi|21 : GATTCAAGTTTG---TCAAAATCA----------------------TGACTC--------CTGGGTATAGGGT
gi|22 : TGCAAAAGTAGGGTGGGGTCATTTAAAAA---TAT---CAAGA--AC---aag
gi|3 : TTTAAAATCCTCTT-CTCAAGAAAC-CTGAACCAAAAAAAAAAAATATTTATCTGAAAGCTTCCTG-TATGGAGTATATTTAAGTTTGGGTTCAGA-TCACCCTCCCGCACCCCCCCCAATATGACCCATTTTTTACAAGGGTTAGGGTGGGGCCACAAGTATGGAATAAAGGTTTTACATAACGAAATATAT-ATAGGGAAAATTTT
gi|4 : TTT-TTA-CTGAACAATGAGCCA-----AAGACTCA-G-GT-GTAACTGTT-CTG---ATCAACAAAA-----T---------CA----AC-GCT--------T-------G----TC---G--------------G------TC-G------TGATC-T-TA--G-AAC-GTTGT--CAC-A-TT--T---------TCTTCTGCGCTCCGAGA-CCAT-TGG-CCAAAAATT-AACAAAAC--TGGTAAAGACAAATTT-CG-TT-GGAGTGATCGGGATTTCAA-CGGTTGTTTAAAGTG---A
gi|5 : -A-GT-G-AGCTTTT-CTG---ATCAA--AAC-----TA--------TA----TT-GTCCAGCCA--TC-----TG----TT---GT------T------GGCAACCTT-G------TCATC-GATT--A-AAC-ATT-TAGCAC---TT--T-CACC-T--TATCCT------AGATAAGCAG-TGG-Catgcgggccag
gi|6 : cttgcatgatggtttagtatcaactcaggctctaaacttaacTGTAGAT--CAA-AT-TTGGTTCACA-TGATGA--CC-------ACCA-----GAGCCA--C--TAG-TG-----TTAAA-TGT--TGCACGTAAATACT-GGACAATTCTATCAAAA----------TCTCGCA-GAACCACAGGGGTATATTTTGTAAAA--------------T-----ATGCCAGCATTCTTAAGTATTG--T----AGAT------TAAAG---TTGTTCTCAC---CATGGCCCtgctaattattatcattctcaaaaaatgcacaaatatcatta
gi|7 : tgtaTTG-CTG---GTCAA--AAT-----T---------CG----TC-CCTCG------TC-----CA----TT---AT------CAGT---G------TC-A------TTATT-G-TA--ATAAA-T-------AG-A----------------CTTCT------CGAGAATCACATGG-TC--AATTCTAACCAA-CTTCC-T----ACAAAGCA-TCATT-GG-GTACAGGGTATTCAAAAT--TTGTCCAAA-GG---AGAGACCAT-GTC
gi|8 : ----ACAAATCATCC-TT-GA-TTGAAGGGGACTCAAA-T--GTGTTCAAA-TG---AAGGACTTT-GCTCTATCAAAGGAGAGATAATCACGAAAATACAAAAACAGGGTGGTATCAT---------TTCT---CAAGA--A--------C--CAAAGCTG-AAATTTGT--ATGAAAG-ATACCTGA--t
gi|9 : TTACC--TGAGCCTTT---ACAGATCA-CCGT-G-AGCCCTT-------ATCTA--AATCACCTT---------TGGA--TT-GTCAA------TC-----TGG---TCAATGT------T------G------TCTGACAATTTTGTCTG-TA--A-A----TT-T--CAC-A-TTTCT-CATC-T--TGTTCT------CCCAAACCAC-TGA-C