lowQualScore : 111 1111 11 111111 11 11 11 111 1111111 666666666666666666666666 111 11111111 333333 11
lowQualScore : 6 111 1 2 6 99 3 5555 11 333333 8 11 8 8 8 11 0 8 2 33 2 9 0 222 3 3 6666 3 3 777 999 5 2 3 44 88888888 3333333 333333333333333333333333 555 1 99 555 2 66666666 666666 8 2 5 2 2 2 555555 2 11 33 666 2 2 2 6 8
lowQualScore : . ... . . . .. . .... .. ...... . .. . . . .. . . . .. . . . ... . . .... . . ... ... . . . .. ........ ....... ........................ ... . .. ... . ........ ...... . . . . . . ...... . .. .. ... . . . . .
lowQualScore : 7 888 0 5 7 22 7 2222 00 777777 0 00 0 0 0 22 8 0 5 88 0 2 2 222 2 3 5555 1 1 999 777 7 9 1 22 66666666 2222222 999999999999999999999999 444 4 66 000 9 11111111 666666 7 9 4 9 9 6 888888 9 55 99 333 2 2 2 1 3
consensus : AATA-CGGGCTCTT-G-GCCTTTGATGTCCTGCTGG-CACGCAA--CGTACTTAAATTTTT--TCAATA---T--A-AA--ATTGGC-CGA-CGA-C-GACAGA-TGGTGCTCGA--TACAATTATCAAAATT---TNTA-CG----T-CTG-CTCTCTT---TGAAT-TCG-CGAAGT-GAAA-G--GAA--GACTG-ATC-TG---GACATGCGCA-ATGCGCA-AATG----CA-AAA---CGC--AT---GAAGGTCGAACCCGA-CGCA-----A--TTTTCCTAA-CCTAATTT-TAGCTTATA-AA-TAAAAT-AGATTA-ANCTG--CGCT--AAATAACCAGGTT-TATC-CA-TAGTGGATAAACCCTATTA
Reference ( gi|5 ) : AATA-TGGGCTCTT-A-GCCTTTGATATCCTGCTGG-CACGCAA--CGTACTTAAATTGTT--TCAATA---T--A-AA--ATTGGC-CGA-TGA-C-GACAGA-TGGTGCTCGA--TACAACTATCAAAATT---TTTA-CG----T-CTG-CTCTCTT---TGAAT-TCG-CAAAGT-GAAA-G--GAA--GACTG-ATC-TG---GACATGCGCAAATGCGCA-AATG----CA-AAA---CAC--AT---GAAGGTCGAACCCGA-CGTA-----A--TTTTCCTAA-CCTGATTT-TAGCTTATA-AA-TAAAAT-CGGTTA-ATTTG--CGCT--AAATAACCAGGTT-TATC-CA-TAGTGGATAAACCCTAATA
gi|4 : AATAATGGGCTCTTTG-GCCTTTGATGTCCTG--GG-CACGCAA--CGTACTTAA-TTTTT--TCAATA---T--A-AA--ATTGGC-CGA-TGA-C-GACAGA-TGGTGCTCGA--TACAATTATCAAATTT---TTTAGCG----T-CTG--TCTCTT---TGAAT-TCG-CAAAGT-GAAA-G--GAA--GACTG-ATC-TG---GACATGCGCAGATGCAC--------------AA---CAC--AT---GAAGGTCGAA-CCGA-CGTA-----A--TTTT--TAA-CCT
gi|1 : cccttatatttgggcaaatgaacgctaatggggtcaggagctgataaagggttggcatttcccccaaagggtcacgtgaaaggggggaatataactacatagcatacatgtacctgagagcgatgtggtcgactgaatcgccaaggggggactggtgtggcaacagcgggtggtgtaaatcgaattatcctcaggttcctgcaaagacttgaacactgacactgccgtggcgtctccccacgtggtcctggttcgagctggcaagttggtggacaaaaaacggtaacatcgcccttgatgaagtttttccctatAATG-CGAGCGCTT-GTGCCTTTGATGTCC-GCTAG-CACGCA---CATACTTTAATTTTTATTCAATA---T--A-AA--ATTGGC-CGA-AGACC-GACAGATTGGTGTTCGAGTTCCAATTCTCAAAATTTTATTTA-CGCTTAT-CTGATTCACTTG--TGA---TCG-AAAAGT-GGAA-GAAGAA--TATTGCATC-TG---GACATGC-CA---GC------TG----CA-ACA---CAA--A----GAAGGTCGACCCCGGCCGTA-----ATTTTTTCTCAATCCTAATTT-TAGCTTATA-AT-TAAAAT-AAATTACATTTGCCCGCCTAAAATAAATAGGTTATATCTCA-TA-TGGATAat
gi|6 : aaattgataggcgtgtgcggttttagcagtaaactcaaccactagttctgcatactcaatagccccactcaagtggaatctgcatttgtattttttattcttttgtggccaaaaattggacgtatttcaagccatttggccttttcattttttcacagccgcctcccccccccttttacttaagccaattagactgatacgtaaaaaggaatggctagaagagtgaaaggcttgtacaaatagtacacgtgcaaataatataacaataacacgtgcatcaatcacattgcaaaatttgctttattttacgatctcttgctgctgtggtatatagaactgctgatgaccatctttcccaagcacaatgtgcgttcttaattggaaaattgctgtggacgagctatgagcaaatgtgaaactaaaattaactatactgatcatatcatgaattttttcacccttatatacttaggggcaaaaatgaaccagctaatagggttatacggagctgataaataggggtggcatttccccccaatgcgggtcacatgaaaaagagcgatataaccagttaaacccacaagtacctgacaaggatgtgtcgaatgaatacgccaagccaggacttctgttaggacaacagcgcgggtagtgtaattcggaaaatctcacggctttctgcgaaaagcactaagacacgtgacgtcaacgtgacccctgacccctacgggctccggccaatctggccagtggtggacaagaactgttgatcgcaatcgcccttgtgaaagttttttccctataatAATA-TGGGCTCTT-A-GCCTTTGATATCCTGCTGG-CACGCAA--CGTcccatt
gi|2 : aaggggactggtgtggcaacagcgggtggtgcaatccgaatatcgagaaaaaacttcattcaagtggcgatgttgacccgtttcagttgccaccaacttgcaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttccctatAATA-TGGGCTCTT-G-GCCGTTGATGTCCTGCTGG-CACGCAA--C--ACTT
gi|24 : gtcttaaaacaattacatgatgggtgagagaaattgcatttgatgcatgtatgagattaattgcagctagatttactacaaatgctcagaaaattgtaatcataacacttacggggaccaagagattgtccttccttattggaagctaactgatgaaattgaagggggtagagggttgcatataaatcaaccacaattctgcatctaccgtagcccaactcaaagtggaatcccatgattttttgagccgaaattggacatcatatttaagccaattgcctttaattttttcacccccctccctttttattaaagtcatgtacctaaacaaaggaatggcttgagatgaatgcttccccaagtagaccgaagcaaatataataaatacatcgtttcattgcgaggaagttgctattttatgatctttgtgtttgtgtttggctttgacctgaatgaccccatcttcaaacgcaatgtggttcttaagagttgtagtggggtcatgatgcaaaagtgaaccaaaatcaacatactgatcattcatgattttttcctttataccttggggcaaatgaaccgctaatggggagacagagcttataaaagggttaggcattttccccaaagggtcacatgaaaatggggatgtaactgtacatgtacctgacgagcgatgtgtcgactgaatcgccaaggggactggtgtggcaacagtgggtggtgtaatctgaatatcctcaggttcctgcatgactttaacactggcacagctgtgtgtctccccacgtggtccctaggttcgggctggcaagttggtggacaaagaaacggtcgaaatcgctcttgatgaagttttccccctatATA-CGGATTCTT-A-GCCTTCGA-AGCCT--TGGATACGCAAAGCATATTTAA---GTT--TAACTA---TCGATAA--AGTATC-CGA-TGA-CAGAC-GA-T
gi|27 : -TGGGCTCTT-A-GCCTTTGATGTCCTGCTGG-CAGGCAA--CGTACTTAAGTTTTT--TCAATA---tgaatcttatacatact
gi|25 : AATTTTT--TCAATA---T--A-AA--ATTGGC-CGA-TGA-C-AACATA-TGGTGCTCGA--TACGATTATTAAAATTG--TGTA-CG----T-CTG-CTCTCTT---TGAAT-TCG-CAAAGT-
gi|20 : AATAAGGT--A-AACTATTGACTCGAGCAA-C--ACAAA-TGGCGCT--G--CACATCT-TAAAAATG---TGGT-CG----T-CTG-CTCTCTTTCATGA---TAG-CGAAATAAAAA-G--GAA--GACT--ATG-T------CATGCGCAGAT
gi|7 : AAATT---TA-A-CG----TACTG-CCTCCTT---GGAGT-TTG-TAAAGA-GAAA-G--GAA--GA-TG-TTCATT---GACATG------TGCGCA-GATG----CACAAA---CTT--CT---AAAGGCCGAACCCGA-CGCA-----A--TTTCCC--A-CCTCATCTATACCTAATA-AT-TGAACT-AAATTA---TTA--GGCT--AAATAACTAGG-T-TAT--CA-TAGT-GATAAACCCTAATA
gi|10 : TT---TGTA-CG----T-CTG-CTCTCTT---TGAAT-TCG-CAAAGT-GAAA-G--GAA--GACTG-ATC-TG---GACATGCGCAGATGCACA-A----------------CAC--AT---GAAGGTCGAACCCGA-CGTA-----A--TTTTCCTAA-CCTAATTT-TAGCTTATA-AA-T-AAAT-AGGTTA-ATTTG--CGCT--AAATAACCAGGTT-TATC-CA-TAGTGGATAAACCCT
gi|11 : tTT---TGTA-CG----T-CTG-CTCTCTT---TGAAT-TCG-CAAAGT-GAAA-G--GAA--GACTG-ATC-TG---GACATGC-CAGATG--------------A-CAA---CAC--AT---GAAGGTCGAACCCGA-CGTA-----A--TTTTCCTAA-CCTAATTT-TAGCTTAT--AA-T-AAAT---ATTA-A-TTG--CGCT--AAATAACCAGGTT-TATC-CA-TAGTGG-TAAACC
gi|9 : T---TTTA-CG----T-CTG-CTCTCTT---TGAAT-TCG-CAAAGT-GAAA-G--GAA--GACTG-ATC-TG---GACATGC--------GCA-AATG----CA-CAA---CAC--AT---GAAGGTCGAACCCGA-CGTA-----A--TTTTCCTAA-CCTAATTT-TAGCTTATA-AA-TAAAAT-AGGTTA-ATTTG--CGCT--AAATAACCAGGTT-TATC-CA-TAGTGGATAAACCCTAt
gi|12 : ---TTTA--G----T-CTG-CTATGTT---CAAAT------GAAGT-GATA-A--AAATGGATTA-CTC-TATATAACATGGGCTAATG---A-AATT----AA-GAAGTTTGT--AT---GA----TGAACCCAA-AGTACATGTA--TTTT--TAA-CATAACT-----CGTATG-A-----------GTTA-AGC-G--CACG--AAATAACCAGGTT-CATC-CA-CATTGGATAAACCt
gi|17 : TTA-CA----T-CTG-CTCGATT----GAAT---G-CGGAAT-GAAA-G--AA------TT-AT-------GACATGCG-----GCGTACAAT------A-AAA---TTCT-ATTTCGTATGCC-AACACGA-TGCA-------------------CT-ACTT-TA---TACA-GA-TAAA------TTA-AGCTG--CACG--AAATAACCAGG-T-TATC-CA-T--T--ATAAACCCa
gi|15 : A-CG----T-CTG-CTCCGAT---TGAAT---GACGGAAT-GAAA-A--GAA-----TT-AT-------GACATGCGCATA----CA-AAT------A-AAA---TTCTAATTTTGTATTCCGAACCCGA-TGCA-------------------CT-ACTT-CAA--TATA-AA-TTAAAT-----TA-AGCTG--CACG--AAATAACCAGGTT-TATC-CT-TATTAGATAAACCCc
gi|16 : A-CG----T-CTG-CTCCGAT---TGAAT---GACGGAAT-GAAA-A--GAA--------ATA-TG----ACATGCGCATA----CA-AAT------A-AAA---TTCT-ATTTTGTATGCCGAACCCGA-TGCA-------------------CTGCTTT-AA---TATAGAA-TAAA------TTA-AGCTG--CACG--AAATAACCAAGTT-TATC-CT-TA
gi|14 : taG----T-CTG-CTCTGTC---T--ATATGA-CGAAAT-GAAAAG--GAA--TACTACAT-------GACATACGC----GTACA-AATGAAGTTA-AAA---ATC--AT---GTATGACGAACCTGA-AGTG--------TTTTTATAA-C---AT----ACCGTA----A-TAAAGTATGG------------------AATAACCAGGTT-TATC-CA-TATTGGATAAACCCtta
gi|13 : ttagtTT---TGAAT-TCG-CAAAGT-GAAA-G--GAA--GATTG-AGC-TG---GACATGCAC---TG------ATG----CA-CAA---CAC--AC---GAAGGTCGAACCCGA-CGTA-----A--TTTTCCTAA-CGTAATTT-TAGCTTATA-AA-TAAAAT-AAATCA-A---G--CGCT--AAATAACCAGGTT-TATC-CA-TAGTGGATCAACCCTAc
gi|19 : GCA-GATG----CA-CAA---CAC--AT---GAAGGTCGAATCCGA-CGCA-----A--TTTTCCTA--CCTGATTT-TAGCTTATA-AA-TAAAAA-AGATTA-ATGTG--CGCT--AAATAACCAGG-T-TATC-CA-TAGTGGATAAACCCTATTAtt
gi|21 : AC--AT---AAAGGTCGAACCCGA-CACA-----A--TTTTCCTAA-CCTAATTT-TAGCTTATA-AA-TAAAAT-AAATCA-ATTTG--CGCT--AAATAACCAGGTT-TATC-CA-TAGTGGATAAACCCTATTAt
gi|26 : CTGATCT-T--TTTGTA-AAATAAA------TTA-AGCTT--CACG--AAATAATCAGGTT-TATC-CT-TATTAGACAAACc
gi|9 : ttatgtcgatttgtGGTT-TATC-CA-CTATGGATAAACC
gi|10 : ttttacgtctgctctctttgaattcgcaaagtgaaaggaagactgatctggacatgcgcaaatgcacaacacatgaaggtcgaacccgacgtaattttcctaacctaattttagcttataaataaaataggttaatttgcgctaaataaccaGGTT-TATC-CA-CTATGGATAAACCctat
gi|21 : ttttgtacgtctgctctctttgaattcgcaaagtgaaaggaagactgatctggacatgcgcagatgcacaacacatgaaggtcgaacccgacgtaattttcctaacctaattttagcttataaataaataggttaatttgcgctaaataaccaGGTT-TATC-CA-CTATGGATAAACCct
gi|14 : acataaaggtcgaacccgacacaattttcctaacctaattttagcttataaataaaataaatcaatttgcgctaaataaccaGGTT-TATC-CAATA-TGGATAAACCctattac
7 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|3 ): AGTAGGAGTTGCATTAGCCTTGTAACATTTAACTAATGAATGGAAACCAGAGCATTTAAGACAACTGTGCAAATAATTACAATTTGGCTTGTTACAGACACCCTGGTAGTTAAAATCATAGCATTTATTGCGGGGCTGTACTGACTGCTGATGTGGAACATTATCAGGAGTTGATGGTTGCATGTACATCATCCATAACTCTACATCCACTGACGCCCAACTTAGTGAAGTATTGTAAGATTTCTTGAGCCGAAATTGAACATCATAATCTAACCAATTGCCTTTGACCTTCTCCGCTCCCCTTTTATCAAGGTCATATATCTAAACATTGGGATTGCTTGCGTTGGATGTTTGACCAAAAAACAGATGTAAATATTGCAAAAGCATCCAGCCATTGAGACAAATTTGAAATCTTTGTTCCTTCTGGTTGGGTTTGACCTGAAATAAGCCATCCTCAAACACCACCTGATTCTGTTGTGTTGAAGTGTGGGTCATGAAAAAGGAGGCTACCAAAATTGCAAAATTGATTATTGCAAATTTTGTCTCTCAGGCTTTGAGGCAAATGCACCGCTAGCGGTGAAACCACACTCATAAATGGGTTAGGTAAAATATCTAACGGGTCAAATTGAA
Unaligned ( gi|8 ): GCATTTGATACAGAATTGAATGTAAGTCCCATTTGGTGTGTTACAAATACCATGGTGATTGTAAGCGTAACATTTAGAGTGTTCACCTGATGATTTGTCAAATTTGGGAGAAATTGAATATAAATGATCCACAACTCCGCATCAACTGAAGCCCAAGACAATGAAATGTCGTAGGATTTT
Unaligned ( gi|18 ): ATCAGATGCAAAAGTGAACCAAAATCAACATACAGATCATTCATGATTGTTTCCCTTATATCTTGGGGCAAATGAACCGCTAATAGGGTCACGGAGCTGATAAAGGGTTAGGTATTTCCCCCAAA
Unaligned ( gi|22 ): TATGGACTCCGAGACTTTGATGCCTCTTGATGCACGAAGCATTTTTTGACTTTTTGATGACCACAAATTAGTGATGGCAATCGATTAAATCTAAAAAAAAAAAAA
Unaligned ( gi|23 ): CATAAATCAACTAAAAATGTAATTGACTTCGCGGGACACTTTAACTATAGAATAAATTAAGCTGCCCGACATAACATCAGTTATCTTATATTAGATAAACCCCA
Unaligned ( gi|28 ): TAACTACATACATACATGTACCTGACGAGCCATGTGTCGACTGAATCGCCAAG
Unaligned ( gi|29 ): ACCAAAATCAACATACTGATCATTGATGATTCTTTCC
Alignments
lowQualScore : 11 111 11 111 11 11 11 11 1111111 555555555 111111 1111111111111 111111
lowQualScore : 00 111 1 3 11 111 11 8 22 11 8 11 8 0 4 7777 3 6666 2 2 777 777 5 2 2 33 666 2 66 0000000 111111111 33 000000 55 8888888888888 999 2 000000 77777 2 2 2 2 4 5 2 99 33 555 33 1 2 2 2 3
lowQualScore : .. ... . . .. ... .. . .. .. . .. . . . .... . .... . . ... ... . . . .. ... . .. ....... ......... .. ...... .. ............. ... . ...... ..... . . . . . . . .. .. ... .. . . . . .
lowQualScore : 88 333 0 8 00 777 00 0 66 22 0 00 0 8 0 4444 1 1111 9 9 333 888 3 7 9 99 444 4 99 1111111 888888888 33 444444 22 1111111111111 333 7 777777 55555 7 7 7 7 2 8 5 00 44 999 44 7 5 5 5 3
consensus : AATA-TGGGCTCTT-G-GCCTTTGATGTCCTGCTGGCACGCAACGTACTTAAATTTTT--TCAATA---TAAA--ATTGGC-CGA-CGAC-GACAGAT-GGTGCTCGA--TACA-ATTATCAAAATT-TN---TA-CG----T-CTG-CTCTCTT---TGAAT-TCG-CGAAGT-GAAA-G--GAA--GACTG-ATC-TG---GACATGCGC-A-TGCGCA-AATG----CA-NAA--------CGC--AT---GAAGGTCGAACCCGAC-GTA-----ATTTT--CCTAA-CCTAATTT-TAGCTTATAA-ATAAAATAAATTA-ANCTG--CGCT--AAATAAC--CAGGTT-TATC-C-ATAGTGGATAAACCCTATTA
Reference ( family-837 ) : AATA-CGGGCTCTT-G-GCCTTTGATGTCCTGCTGGCACGCAACGTACTTAAATTTTT--TCAATA---TAAA--ATTGGC-CGA-CGAC-GACAGAT-GGTGCTCGA--TACA-ATTATCAAAATT-TN---TA-CG----T-CTG-CTCTCTT---TGAAT-TCG-CGAAGT-GAAA-G--GAA--GACTG-ATC-TG---GACATGCGC-AATGCGCA-AATG----CA-AAA--------CGC--AT---GAAGGTCGAACCCGAC-GCA-----ATTTT--CCTAA-CCTAATTT-TAGCTTATAA-ATAAAATAGATTA-ANCTG--CGCT--AAATAAC--CAGGTT-TATC-C-ATAGTGGATAAACCCTATTA
gi|1 : AATG-CGAGCGCTT-GTGCCTTTGATGTCC-GCTAGCACGCA-CATACTTTAATTTTTATTCAATA---TAAA--ATTGGC-CGA-AGACCGACAGATTGGTGTTCGAGTTCCA-ATTCTCAAAATT-TTATTTA-CGCTTAT-CTGATTCACTTG--TGA---TCG-AAAAGT-GGAA-GAAGAA--TATTGCATC-TG---GACATGC-C-A----GC----TG----CA-ACA--------CAA--A----GAAGGTCGACCCCGGCCGTA-----ATTTTTTCTCAATCCTAATTT-TAGCTTATAA-TTAAAATAAATTACATTTGCCCGCCTAAAATAAA--TAGGTTATATCTC-ATA-TGGATA---CCCATT
gi|10 : aaattgataggcgtgtgcggttttagcagtaaactcaaccactagttctgcatactcaatagccccactcaagtggaatctgcatttgtattttttattcttttgtggccaaaaattggacgtatttcaagccatttggccttttcattttttcacagccgcctcccccccccttttacttaagccaattagactgatacgtaaaaaggaatggctagaagagtgaaaggcttgtacaaatagtacacgtgcaaataatataacaataacacgtgcatcaatcacattgcaaaatttgctttattttacgatctcttgctgctgtggtatatagaactgctgatgaccatctttcccaagcacaatgtgcgttcttaattggaaaattgctgtggacgagctatgagcaaatgtgaaactaaaattaactatactgatcatatcatgaattttttcacccttatatacttaggggcaaaaatgaaccagctaatagggttatacggagctgataaataggggtggcatttccccccaatgcgggtcacatgaaaaagagcgatataaccagttaaacccacaagtacctgacaaggatgtgtcgaatgaatacgccaagccaggacttctgttaggacaacagcgcgggtagtgtaattcggaaaatctcacggctttctgcgaaaagcactaagacacgtgacgtcaacgtgacccctgacccctacgggctccggccaatctggccagtggtggacaagaactgttgatcgcaatcgcccttgtgaaagttttttccctataatTT-TG---TA-CG----T-CTG-CTCTCTT---TGAAT-TCG-CAAAGT-GAAA-G--GAA--GACTG-ATC-TG---GACATGCGC-AG--------ATG----CA-CAA--------CAC--AT---GAAGGTCGAACCCGAC-GTA-----ATTTT--CCTAA-CCTAATTT-TAGCTTATAA-AT-AAATAGGTTA-ATTTG--CGCT--AAATAAC--CAGGTT-TATC-C-ATAGTGGATAAACCCT
gi|11 : tTT-TG---TA-CG----T-CTG-CTCTCTT---TGAAT-TCG-CAAAGT-GAAA-G--GAA--GACTG-ATC-TG---GACATGC---------CA-GATG-----A-CAA--------CAC--AT---GAAGGTCGAACCCGAC-GTA-----ATTTT--CCTAA-CCTAATTT-TAGCTTAT-A-AT-AAAT--ATTA-AT-TG--CGCT--AAATAAC--CAGGTT-TATC-C-ATAGTGG-TAAACC
gi|12 : -TT---TA--G----T-CTG-CTATGTT---CAAAT------GAAGT-GATA-A--AAATGGATTA-CTC-TATATAACATGGGCTAATG---A-AATT----AA-GAAGTT-----TGT--AT---GA----TGAACCCAAA-GTACATGTATTTT----TAA-CATAACT-----CGTATGA-GT---------TA-AGC-G--CACG--AAATAAC--CAGGTT-CATC-C-ACATTGGATAAACCt
gi|13 : TT---TGAAT-TCG-CAAAGT-GAAA-G--GAA--GATTG-AGC-TG---GACATGCAC---TG------ATG----CA-CAA--------CAC--AC---GAAGGTCGAACCCGAC-GTA-----ATTTT--CCTAA-CGTAATTT-TAGCTTATAA-ATAAAATAAATCA-A---G--CGCT--AAATAAC--CAGGTT-TATC-C-ATAGTGGATCAACCCTATTa
gi|14 : G----T-CTG-CTCTGTC---T--ATATGA-CGAAAT-GAAAAG--GAA--TACTACAT-------GACATACGC----GTACA-AATGAAGTTA-AAA--------ATC--AT---GTATGACGAACCTGAA-GTG------TTTT--TATAA-CATACCGT----------A-ATAAAGTA---------TG--------GAATAAC--CAGGTT-TATC-C-ATATTGGATAAACCC
gi|15 : ttagtA-CG----T-CTG-CTCCGAT---TGAAT---GACGGAAT-GAAA-A--GAA-----TT-AT-------GACATGCGC-A---TACA-AAT------A-AAA--------TTCTAATTTTGTATTCCGAACCCGAT-GCA-------------------CTACTTC-AA---TATAA-AT----TAAATTA-AGCTG--CACG--AAATAAC--CAGGTT-TATC-C-TTATTAGATAAACCCc
gi|16 : A-CG----T-CTG-CTCCGAT---TGAAT---GACGGAAT-GAAA-A--GAA--------ATA-TG----ACATGCGC-A---TACA-AAT------A-AAA--------TTCT-ATTTTGTATGCCGAACCCGAT-GCA-------------------CT--------GCTT-TAATATAGAATAAATTA-AGCTG--CACG--AAATAAC--CAAGTT-TATC-C-TTA
gi|17 : ta---TA-CA----T-CTG-CTCGATT----GAAT---G-CGGAAT-GAAA-G--AA------TT-AT-------GACATGCG-----GCGTACAAT------A-AAATTCTATTTCGT--AT---G-----CCAACACGAT-GCA-------------------CTA-CTT-TA---TACAG-ATAAA-----TTA-AGCTG--CACG--AAATAAC--CAGG-T-TATC-C-AT--T--ATAAACCCtta
gi|19 : tGCA-GATG----CA-CAA--------CAC--AT---GAAGGTCGAATCCGAC-GCA-----ATTTT--CCTA--CCTGATTT-TAGCTTATAA-ATAAAAAAGATTA-ATGTG--CGCT--AAATAAC--CAGG-T-TATC-C-ATAGTGGATAAACCCTATTAc
gi|2 : AATA-TGGGCTCTT-G-GCCGTTGATGTCCTGCTGGCACGCAAC--ACTTt
gi|20 : gtcttaaaacaattacatgatgggtgagagaaattgcatttgatgcatgtatgagattaattgcagctagatttactacaaatgctcagaaaattgtaatcataacacttacggggaccaagagattgtccttccttattggaagctaactgatgaaattgaagggggtagagggttgcatataaatcaaccacaattctgcatctaccgtagcccaactcaaagtggaatcccatgattttttgagccgaaattggacatcatatttaagccaattgcctttaattttttcacccccctccctttttattaaagtcatgtacctaaacaaaggaatggcttgagatgaatgcttccccaagtagaccgaagcaaatataataaatacatcgtttcattgcgaggaagttgctattttatgatctttgtgtttgtgtttggctttgacctgaatgaccccatcttcaaacgcaatgtggttcttaagagttgtagtggggtcatgatgcaaaagtgaaccaaaatcaacatactgatcattcatgattttttcctttataccttggggcaaatgaaccgctaatggggagacagagcttataaaagggttaggcattttccccaaagggtcacatgaaaatggggatgtaactgtacatgtacctgacgagcgatgtgtcgactgaatcgccaaggggactggtgtggcaacagtgggtggtgtaatctgaatatcctcaggttcctgcatgactttaacactggcacagctgtgtgtctccccacgtggtccctaggttcgggctggcaagttggtggacaaagaaacggtcgaaatcgctcttgatgaagttttccccctatAATAAGGTAAACTATTGACTCGAGCAAC--ACAAAT-GGCGCT--G--CACATCTTA--AAAATG-TG---GT-CG----T-CTG-CTCTCTTTCATGA---TAG-CGAAATAAAAA-G--GAA--GACT--ATG-T------CATGCGC-A
gi|21 : C--AT---AAAGGTCGAACCCGAC-ACA-----ATTTT--CCTAA-CCTAATTT-TAGCTTATAA-ATAAAATAAATCA-ATTTG--CGCT--AAATAAC--CAGGTT-TATC-C-ATAGTGGATAAACCCTATTAgat
gi|23 : aACTT-TAACT------ATAGAATAAATTA-AGCTG--CCCG--ACATAACATCAG--T-TATC-TTATATTAGATAAACCCCAc
gi|25 : cataaatcaactaaaaatgtaattgacttcgcgggacAATTTTT--TCAATA---TAAA--ATTGGC-CGA-TGAC-AACATAT-GGTGCTCGA--TACG-ATTATTAAAATTGTG---TA-CG----T-CTG-CTCTCTT---TGAAT-TCG-CAAAGT-
gi|26 : TAAAATAAATTA-AGCTT--CACG--AAATAAT--CAGGTT-TATC-C-TTATTAGACAAAC
gi|27 : ttatgtcgatttgtctgatctttttgGGGCTCTT-A-GCCTTTGATGTCCTGCTGGCAGGCAACGTACTTAAGTTTTT--TCAATA---
gi|4 : tAATAATGGGCTCTTTG-GCCTTTGATGTCCTG--GGCACGCAACGTACTTAA-TTTTT--TCAATA---TAAA--ATTGGC-CGA-TGAC-GACAGAT-GGTGCTCGA--TACA-ATTATCAAATTT-TT---TAGCG----T-CTG--TCTCTT---TGAAT-TCG-CAAAGT-GAAA-G--GAA--GACTG-ATC-TG---GAC--------ATGCGCA-GATG----CA-CAA--------CAC--AT---GAAGGTCGAA-CCGAC-GTA-----ATTTT----TAA-CCTA
gi|5 : cccttatatttgggcaaatgaacgctaatggggtcaggagctgataaagggttggcatttcccccaaagggtcacgtgaaaggggggaatataactacatagcatacatgtacctgagagcgatgtggtcgactgaatcgccaaggggggactggtgtggcaacagcgggtggtgtaaatcgaattatcctcaggttcctgcaaagacttgaacactgacactgccgtggcgtctccccacgtggtcctggttcgagctggcaagttggtggacaaaaaacggtaacatcgcccttgatgaagtttttccctatAATA-TGGGCTCTT-A-GCCTTTGATATCCTGCTGGCACGCAACGTACTTAAATTGTT--TCAATA---TAAA--ATTGGC-CGA-TGAC-GACAGAT-GGTGCTCGA--TACA-ACTATCAAAATT-TT---TA-CG----T-CTG-CTCTCTT---TGAAT-TCG-CAAAGT-GAAA-G--GAA--GACTG-ATC-TG---GACATGCGCAAATGCGCA-AATG----CA-AAA--------CAC--AT---GAAGGTCGAACCCGAC-GTA-----ATTTT--CCTAA-CCTGATTT-TAGCTTATAA-ATAAAATCGGTTA-ATTTG--CGCT--AAATAAC--CAGGTT-TATC-C-ATAGTGGATAAACCCTAATAt
gi|6 : AATA-TGGGCTCTT-A-GCCTTTGATATCCTGCTGGCACGCAACGT
gi|7 : aaggggactggtgtggcaacagcgggtggtgcaatccgaatatcgagaaaaaacttcattcaagtggcgatgttgacccgtttcagttgccaccaacttgcaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttccctatAAATT-TA----A-CG----TACTG-CCTCCTT---GGAGT-TTG-TAAAGA-GAAA-G--GAA--GA-TG-TTCATT---GACATG------TGCGCA-GATG----CACAAA--------CTT--CT---AAAGGCCGAACCCGAC-GCA-----ATTTC--CC--A-CCTCATCTATACCTAATAA-TTGAACTAAATTA---TTA--GGCT--AAATAAC--TAGG-T-TAT--C-ATAGT-GATAAACCCTAATA
gi|9 : T-TT---TA-CG----T-CTG-CTCTCTT---TGAAT-TCG-CAAAGT-GAAA-G--GAA--GACTG-ATC-TG---GACATGC--------GCA-AATG----CA-CAA--------CAC--AT---GAAGGTCGAACCCGAC-GTA-----ATTTT--CCTAA-CCTAATTT-TAGCTTATAA-ATAAAATAGGTTA-ATTTG--CGCT--AAATAAC--CAGGTT-TATC-C-ATAGTGGATAAACCCTAT
7 sequences could not be aligned to this reference sequence:
Unaligned ( gi|3 ): AGTAGGAGTTGCATTAGCCTTGTAACATTTAACTAATGAATGGAAACCAGAGCATTTAAGACAACTGTGCAAATAATTACAATTTGGCTTGTTACAGACACCCTGGTAGTTAAAATCATAGCATTTATTGCGGGGCTGTACTGACTGCTGATGTGGAACATTATCAGGAGTTGATGGTTGCATGTACATCATCCATAACTCTACATCCACTGACGCCCAACTTAGTGAAGTATTGTAAGATTTCTTGAGCCGAAATTGAACATCATAATCTAACCAATTGCCTTTGACCTTCTCCGCTCCCCTTTTATCAAGGTCATATATCTAAACATTGGGATTGCTTGCGTTGGATGTTTGACCAAAAAACAGATGTAAATATTGCAAAAGCATCCAGCCATTGAGACAAATTTGAAATCTTTGTTCCTTCTGGTTGGGTTTGACCTGAAATAAGCCATCCTCAAACACCACCTGATTCTGTTGTGTTGAAGTGTGGGTCATGAAAAAGGAGGCTACCAAAATTGCAAAATTGATTATTGCAAATTTTGTCTCTCAGGCTTTGAGGCAAATGCACCGCTAGCGGTGAAACCACACTCATAAATGGGTTAGGTAAAATATCTAACGGGTCAAATTGAA
Unaligned ( gi|8 ): GCATTTGATACAGAATTGAATGTAAGTCCCATTTGGTGTGTTACAAATACCATGGTGATTGTAAGCGTAACATTTAGAGTGTTCACCTGATGATTTGTCAAATTTGGGAGAAATTGAATATAAATGATCCACAACTCCGCATCAACTGAAGCCCAAGACAATGAAATGTCGTAGGATTTT
Unaligned ( gi|18 ): ATCAGATGCAAAAGTGAACCAAAATCAACATACAGATCATTCATGATTGTTTCCCTTATATCTTGGGGCAAATGAACCGCTAATAGGGTCACGGAGCTGATAAAGGGTTAGGTATTTCCCCCAAA
Unaligned ( gi|22 ): TATGGACTCCGAGACTTTGATGCCTCTTGATGCACGAAGCATTTTTTGACTTTTTGATGACCACAAATTAGTGATGGCAATCGATTAAATCTAAAAAAAAAAAAA
Unaligned ( gi|24 ): ATACGGATTCTTAGCCTTCGAAGCCTTGGATACGCAAAGCATATTTAAGTTTAACTATCGATAAAGTATCCGATGACAGACGATTGAATCTTATACATACT
Unaligned ( gi|28 ): TAACTACATACATACATGTACCTGACGAGCCATGTGTCGACTGAATCGCCAAG
Unaligned ( gi|29 ): ACCAAAATCAACATACTGATCATTGATGATTCTTTCC
Alignments
lowQualScore : 111 11 111 11 11 11 11 1111111 333333333333 111111 2222222222222 111111
lowQualScore : 6 111 1 3 11 111 11 8 22 11 8 11 8 0 4 7777 3 6666 2 2 777 777 5 2 2 33 666 2 66 0000000 111111111111 2 222222 1 5555555555555 999 2 000000 666 33 1 33 1 2 4 2 99 33 555 33 1 2 5 3
lowQualScore : . ... . . .. ... .. . .. .. . .. . . . .... . .... . . ... ... . . . .. ... . .. ....... ............ . ...... . ............. ... . ...... ... .. . .. . . . . .. .. ... .. . . . .
lowQualScore : 7 333 0 8 00 777 00 0 66 22 0 00 0 8 0 4444 1 1111 9 9 333 888 3 7 9 99 444 4 99 1111111 333333333333 9 222222 0 1111111111111 333 7 777777 444 44 1 55 1 7 1 5 00 44 999 44 7 5 0 3
consensus : AATA-TGGGCTCTT-G-GCCTTTGATGTCCTGCTGGCACGCAACGTACTTAAATTTTT--TCAATA---TAAA--ATTGGC-CGA-CGAC-GACAGAT-GGTGCTCGA--TACA-ATTATCAAAATT-TN---TA-CG----T-CTG-CTCTCTT---TGAAT-TCG-CGAAGT-GAAA-G--GAA--GACTG-ATC-TG---GACATGCGC--ATGC-GCA-AATG----CACAA--------CGC--AT---GAAGGTCGAACCCGAC-GTA-----ATTTT--CCTAA-CCTAATTT-TAGCTTATAA-ATAAAATAAATTA-ANCTG--CGCT--AAATAAC--CAGGTT-TATC-CATAGTGGATAAACCCTATTA
Reference ( family-837 ) : AATA-TGGGCTCTT-G-GCCTTTGATGTCCTGCTGGCACGCAACGTACTTAAATTTTT--TCAATA---TAAA--ATTGGC-CGA-CGAC-GACAGAT-GGTGCTCGA--TACA-ATTATCAAAATT-TN---TA-CG----T-CTG-CTCTCTT---TGAAT-TCG-CGAAGT-GAAA-G--GAA--GACTG-ATC-TG---GACATGCGC--ATGC-GCA-AATG----CANAA--------CGC--AT---GAAGGTCGAACCCGAC-GTA-----ATTTT--CCTAA-CCTAATTT-TAGCTTATAA-ATAAAATAAATTA-ANCTG--CGCT--AAATAAC--CAGGTT-TATC-CATAGTGGATAAACCCTATTA
gi|1 : AATG-CGAGCGCTT-GTGCCTTTGATGTCC-GCTAGCACGCA-CATACTTTAATTTTTATTCAATA---TAAA--ATTGGC-CGA-AGACCGACAGATTGGTGTTCGAGTTCCA-ATTCTCAAAATT-TTATTTA-CGCTTAT-CTGATTCACTTG--TGA---TCG-AAAAGT-GGAA-GAAGAA--TATTGCATC-TG---GACATGC-C--A-GCTGCA-A-------CACAA-------------A----GAAGGTCGACCCCGGCCGTA-----ATTTTTTCTCAATCCTAATTT-TAGCTTATAA-TTAAAATAAATTACATTTGCCCGCCTAAAATAAA--TAGGTTATATCTCATA-TGGATA---CCCATT
gi|10 : aaattgataggcgtgtgcggttttagcagtaaactcaaccactagttctgcatactcaatagccccactcaagtggaatctgcatttgtattttttattcttttgtggccaaaaattggacgtatttcaagccatttggccttttcattttttcacagccgcctcccccccccttttacttaagccaattagactgatacgtaaaaaggaatggctagaagagtgaaaggcttgtacaaatagtacacgtgcaaataatataacaataacacgtgcatcaatcacattgcaaaatttgctttattttacgatctcttgctgctgtggtatatagaactgctgatgaccatctttcccaagcacaatgtgcgttcttaattggaaaattgctgtggacgagctatgagcaaatgtgaaactaaaattaactatactgatcatatcatgaattttttcacccttatatacttaggggcaaaaatgaaccagctaatagggttatacggagctgataaataggggtggcatttccccccaatgcgggtcacatgaaaaagagcgatataaccagttaaacccacaagtacctgacaaggatgtgtcgaatgaatacgccaagccaggacttctgttaggacaacagcgcgggtagtgtaattcggaaaatctcacggctttctgcgaaaagcactaagacacgtgacgtcaacgtgacccctgacccctacgggctccggccaatctggccagtggtggacaagaactgttgatcgcaatcgcccttgtgaaagttttttccctataatTT-TG---TA-CG----T-CTG-CTCTCTT---TGAAT-TCG-CAAAGT-GAAA-G--GAA--GACTG-ATC-TG---GACATGCGC--A--------GATG----CACAA--------CAC--AT---GAAGGTCGAACCCGAC-GTA-----ATTTT--CCTAA-CCTAATTT-TAGCTTATAA-AT-AAATAGGTTA-ATTTG--CGCT--AAATAAC--CAGGTT-TATC-CATAGTGGATAAACCCT
gi|11 : tTT-TG---TA-CG----T-CTG-CTCTCTT---TGAAT-TCG-CAAAGT-GAAA-G--GAA--GACTG-ATC-TG---GACATGC----------CA-GATG-----ACAA--------CAC--AT---GAAGGTCGAACCCGAC-GTA-----ATTTT--CCTAA-CCTAATTT-TAGCTTAT-A-AT-AAAT--ATTA-AT-TG--CGCT--AAATAAC--CAGGTT-TATC-CATAGTGG-TAAACC
gi|12 : -TT---TA--G----T-CTG-CTATGTT---CAAAT------GAAGT-GATA-A--AAATGGATTA-CTC-TATATAACATGGGCTAATG----A-AATT----AAGAAGTT-----TGT--AT---GA----TGAACCCAAA-GTACATGTATTTT----TAA-CATAA-------CTCGTA--------TGAGTTA-AGC-G--CACG--AAATAAC--CAGGTT-CATC-CACATTGGATAAACCt
gi|13 : TT---TGAAT-TCG-CAAAGT-GAAA-G--GAA--GATTG-AGC-TG---GACATGCAC---TG-------ATG----CACAA--------CAC--AC---GAAGGTCGAACCCGAC-GTA-----ATTTT--CCTAA-CGTAATTT-TAGCTTATAA-ATAAAATAAATCA-A---G--CGCT--AAATAAC--CAGGTT-TATC-CATAGTGGATCAACCCTATTa
gi|14 : G----T-CTG-CTCTGTC---T--ATATGA-CGAAAT-GAAAAG--GAA--TACTACAT-------GACATACGC----GT-ACA-AATGAAGTTAAAA--------ATC--AT---GTATGACGAACCTGAA-GTG------TTTT--TATAA-CATACCGT----------A-ATAAAGTA---------TG--------GAATAAC--CAGGTT-TATC-CATATTGGATAAACCC
gi|15 : ttagtA-CG----T-CTG-CTCCGAT---TGAAT---GACGGAAT-GAAA-A--GAA-----TT-AT-------GACATGCGC--ATAC---A-AAT------AAAA--------TTCTAATTTTGTATTCCGAACCCGAT-GCA-------------------CTACTTC-AA---TATAA-AT----TAAATTA-AGCTG--CACG--AAATAAC--CAGGTT-TATC-CTTATTAGATAAACCCc
gi|16 : A-CG----T-CTG-CTCCGAT---TGAAT---GACGGAAT-GAAA-A--GAA--------ATA-TG----ACATGCGC--ATAC---A-AAT------AAAA--------TTCT-ATTTTGTATGCCGAACCCGAT-GCA-------------------CT--------GCTT-TAATATAGAATAAATTA-AGCTG--CACG--AAATAAC--CAAGTT-TATC-CTTA
gi|17 : ta---TA-CA----T-CTG-CTCGA-T---TGAAT---G-CGGAAT-GAAA-G--AA------TT-AT-------GACATGCG-----GC-GTACAAT------AAAATTCTATTTCGT--AT---G-----CCAACACGAT-GCA-------------CTA---CT----------TTATA----CAGATAAATTA-AGCTG--CACG--AAATAAC--CAGG-T-TATC-CAT--T--ATAAACCCtta
gi|19 : t-GCA-GATG----CACAA--------CAC--AT---GAAGGTCGAATCCGAC-GCA-----ATTTT--CCTA--CCTGATTT-TAGCTTATAA-ATAAAAAAGATTA-ATGTG--CGCT--AAATAAC--CAGG-T-TATC-CATAGTGGATAAACCCTATTAc
gi|2 : AATA-TGGGCTCTT-G-GCCGTTGATGTCCTGCTGGCACGCAAC--ACTTt
gi|20 : gtcttaaaacaattacatgatgggtgagagaaattgcatttgatgcatgtatgagattaattgcagctagatttactacaaatgctcagaaaattgtaatcataacacttacggggaccaagagattgtccttccttattggaagctaactgatgaaattgaagggggtagagggttgcatataaatcaaccacaattctgcatctaccgtagcccaactcaaagtggaatcccatgattttttgagccgaaattggacatcatatttaagccaattgcctttaattttttcacccccctccctttttattaaagtcatgtacctaaacaaaggaatggcttgagatgaatgcttccccaagtagaccgaagcaaatataataaatacatcgtttcattgcgaggaagttgctattttatgatctttgtgtttgtgtttggctttgacctgaatgaccccatcttcaaacgcaatgtggttcttaagagttgtagtggggtcatgatgcaaaagtgaaccaaaatcaacatactgatcattcatgattttttcctttataccttggggcaaatgaaccgctaatggggagacagagcttataaaagggttaggcattttccccaaagggtcacatgaaaatggggatgtaactgtacatgtacctgacgagcgatgtgtcgactgaatcgccaaggggactggtgtggcaacagtgggtggtgtaatctgaatatcctcaggttcctgcatgactttaacactggcacagctgtgtgtctccccacgtggtccctaggttcgggctggcaagttggtggacaaagaaacggtcgaaatcgctcttgatgaagttttccccctatAATAAGGTAAACTATTGACTCGAGCAAC--ACAAAT-GGCGCT--G--CACATCTTA--AAAATG-TG---GT-CG----T-CTG-CTCTCTTTCATGA---TAG-CGAAATAAAAA-G--GAA--GACT--ATG-T------CATGCGC--A
gi|21 : C--AT---AAAGGTCGAACCCGAC-ACA-----ATTTT--CCTAA-CCTAATTT-TAGCTTATAA-ATAAAATAAATCA-ATTTG--CGCT--AAATAAC--CAGGTT-TATC-CATAGTGGATAAACCCTATTAgat
gi|23 : aACTT-TAACT------ATAGAATAAATTA-AGCTG--CCCG--ACATAACATCAG--T-TATCTTATATTAGATAAACCCCAc
gi|25 : cataaatcaactaaaaatgtaattgacttcgcgggacAATTTTT--TCAATA---TAAA--ATTGGC-CGA-TGAC-AACATAT-GGTGCTCGA--TACG-ATTATTAAAATTGTG---TA-CG----T-CTG-CTCTCTT---TGAAT-TCG-CAAAGT-
gi|26 : TAAAATAAATTA-AGCTT--CACG--AAATAAT--CAGGTT-TATC-CTTATTAGACAAAC
gi|27 : ttatgtcgatttgtctgatctttttg-TGGGCTCTT-A-GCCTTTGATGTCCTGCTGGCAGGCAACGTACTTAAGTTTTT--TCAATA---
gi|4 : AATAATGGGCTCTTTG-GCCTTTGATGTCCTG--GGCACGCAACGTACTTAA-TTTTT--TCAATA---TAAA--ATTGGC-CGA-TGAC-GACAGAT-GGTGCTCGA--TACA-ATTATCAAATTT-TT---TAGCG----T-CTG--TCTCTT---TGAAT-TCG-CAAAGT-GAAA-G--GAA--GACTG-ATC-TG---GA------C--ATGC-GCA-GATG----CACAA--------CAC--AT---GAAGGTCGAA-CCGAC-GTA-----ATTTT----TAA-CCTA
gi|5 : cccttatatttgggcaaatgaacgctaatggggtcaggagctgataaagggttggcatttcccccaaagggtcacgtgaaaggggggaatataactacatagcatacatgtacctgagagcgatgtggtcgactgaatcgccaaggggggactggtgtggcaacagcgggtggtgtaaatcgaattatcctcaggttcctgcaaagacttgaacactgacactgccgtggcgtctccccacgtggtcctggttcgagctggcaagttggtggacaaaaaacggtaacatcgcccttgatgaagtttttccctatAATA-TGGGCTCTT-A-GCCTTTGATATCCTGCTGGCACGCAACGTACTTAAATTGTT--TCAATA---TAAA--ATTGGC-CGA-TGAC-GACAGAT-GGTGCTCGA--TACA-ACTATCAAAATT-TT---TA-CG----T-CTG-CTCTCTT---TGAAT-TCG-CAAAGT-GAAA-G--GAA--GACTG-ATC-TG---GACATGCGCAAATGC-GCA-AATG----CAAAA--------CAC--AT---GAAGGTCGAACCCGAC-GTA-----ATTTT--CCTAA-CCTGATTT-TAGCTTATAA-ATAAAATCGGTTA-ATTTG--CGCT--AAATAAC--CAGGTT-TATC-CATAGTGGATAAACCCTAATAt
gi|6 : AATA-TGGGCTCTT-A-GCCTTTGATATCCTGCTGGCACGCAACGT
gi|7 : aaggggactggtgtggcaacagcgggtggtgcaatccgaatatcgagaaaaaacttcattcaagtggcgatgttgacccgtttcagttgccaccaacttgcaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttccctatAAATT-TA----A-CG----TACTG-CCTCCTT---GGAGT-TTG-TAAAGA-GAAA-G--GAA--GA-TG-TTCATT---GACATG------TGC-GCA-GATG----CACAAA-------CTT--CT---AAAGGCCGAACCCGAC-GCA-----ATTTC--CC--A-CCTCATCTATACCTAATAA-TTGAACTAAATTA---TTA--GGCT--AAATAAC--TAGG-T-TAT--CATAGT-GATAAACCCTAATA
gi|9 : T-TT---TA-CG----T-CTG-CTCTCTT---TGAAT-TCG-CAAAGT-GAAA-G--GAA--GACTG-ATC-TG---GACATG--------C-GCA-AATG----CACAA--------CAC--AT---GAAGGTCGAACCCGAC-GTA-----ATTTT--CCTAA-CCTAATTT-TAGCTTATAA-ATAAAATAGGTTA-ATTTG--CGCT--AAATAAC--CAGGTT-TATC-CATAGTGGATAAACCCTAT
7 sequences could not be aligned to this reference sequence:
Unaligned ( gi|3 ): AGTAGGAGTTGCATTAGCCTTGTAACATTTAACTAATGAATGGAAACCAGAGCATTTAAGACAACTGTGCAAATAATTACAATTTGGCTTGTTACAGACACCCTGGTAGTTAAAATCATAGCATTTATTGCGGGGCTGTACTGACTGCTGATGTGGAACATTATCAGGAGTTGATGGTTGCATGTACATCATCCATAACTCTACATCCACTGACGCCCAACTTAGTGAAGTATTGTAAGATTTCTTGAGCCGAAATTGAACATCATAATCTAACCAATTGCCTTTGACCTTCTCCGCTCCCCTTTTATCAAGGTCATATATCTAAACATTGGGATTGCTTGCGTTGGATGTTTGACCAAAAAACAGATGTAAATATTGCAAAAGCATCCAGCCATTGAGACAAATTTGAAATCTTTGTTCCTTCTGGTTGGGTTTGACCTGAAATAAGCCATCCTCAAACACCACCTGATTCTGTTGTGTTGAAGTGTGGGTCATGAAAAAGGAGGCTACCAAAATTGCAAAATTGATTATTGCAAATTTTGTCTCTCAGGCTTTGAGGCAAATGCACCGCTAGCGGTGAAACCACACTCATAAATGGGTTAGGTAAAATATCTAACGGGTCAAATTGAA
Unaligned ( gi|8 ): GCATTTGATACAGAATTGAATGTAAGTCCCATTTGGTGTGTTACAAATACCATGGTGATTGTAAGCGTAACATTTAGAGTGTTCACCTGATGATTTGTCAAATTTGGGAGAAATTGAATATAAATGATCCACAACTCCGCATCAACTGAAGCCCAAGACAATGAAATGTCGTAGGATTTT
Unaligned ( gi|18 ): ATCAGATGCAAAAGTGAACCAAAATCAACATACAGATCATTCATGATTGTTTCCCTTATATCTTGGGGCAAATGAACCGCTAATAGGGTCACGGAGCTGATAAAGGGTTAGGTATTTCCCCCAAA
Unaligned ( gi|22 ): TATGGACTCCGAGACTTTGATGCCTCTTGATGCACGAAGCATTTTTTGACTTTTTGATGACCACAAATTAGTGATGGCAATCGATTAAATCTAAAAAAAAAAAAA
Unaligned ( gi|24 ): ATACGGATTCTTAGCCTTCGAAGCCTTGGATACGCAAAGCATATTTAAGTTTAACTATCGATAAAGTATCCGATGACAGACGATTGAATCTTATACATACT
Unaligned ( gi|28 ): TAACTACATACATACATGTACCTGACGAGCCATGTGTCGACTGAATCGCCAAG
Unaligned ( gi|29 ): ACCAAAATCAACATACTGATCATTGATGATTCTTTCC
Alignments
lowQualScore : 111 11 111 11 11 11 11 1111111 333333333333 111111 2222222222 111111
lowQualScore : 6 111 1 3 11 111 11 8 22 11 8 11 8 0 4 7777 3 6666 2 2 777 777 5 2 2 33 666 2 66 0000000 444444444444 2 000000 6666666666 2 444 2 000000 444 2 2 66 1 1 5 1 2 99 33 555 33 1 2 5 3
lowQualScore : . ... . . .. ... .. . .. .. . .. . . . .... . .... . . ... ... . . . .. ... . .. ....... ............ . ...... .......... . ... . ...... ... . . .. . . . . . .. .. ... .. . . . .
lowQualScore : 7 333 0 8 00 777 00 0 66 22 0 00 0 8 0 4444 1 1111 9 9 333 888 3 7 9 99 444 4 99 1111111 000000000000 9 444444 4444444444 7 777 7 777777 777 7 1 33 1 7 3 1 5 00 44 999 44 7 5 0 3
consensus : AATA-TGGGCTCTT-G-GCCTTTGATGTCCTGCTGGCACGCAACGTACTTAAATTTTT--TCAATA---TAAA--ATTGGC-CGA-CGAC-GACAGAT-GGTGCTCGA--TACA-ATTATCAAAATT-TN---TA-CG----T-CTG-CTCTCTT---TGAAT-TCG-CGAAGT-GAAA-G--GAA--GACTG-ATC-TG---GACATGCGC--ATGC-GCA-AATG----CACAA--------CGC-AT---GAAGGTCGAACCCGAC-GTA-----ATTTT--CCTAA-CCTAATTT--TAGCTTATAA-ATAAAATAAATTA-ANCTG--CGCT--AAATAAC--CAGGTT-TATC-CATAGTGGATAAACCCTATTA
Reference ( family-837 ) : AATA-TGGGCTCTT-G-GCCTTTGATGTCCTGCTGGCACGCAACGTACTTAAATTTTT--TCAATA---TAAA--ATTGGC-CGA-CGAC-GACAGAT-GGTGCTCGA--TACA-ATTATCAAAATT-TN---TA-CG----T-CTG-CTCTCTT---TGAAT-TCG-CGAAGT-GAAA-G--GAA--GACTG-ATC-TG---GACATGCGC--ATGC-GCA-AATG----CACAA--------CGC-AT---GAAGGTCGAACCCGAC-GTA-----ATTTT--CCTAA-CCTAATTT--TAGCTTATAA-ATAAAATAAATTA-ANCTG--CGCT--AAATAAC--CAGGTT-TATC-CATAGTGGATAAACCCTATTA
gi|1 : AATG-CGAGCGCTT-GTGCCTTTGATGTCC-GCTAGCACGCA-CATACTTTAATTTTTATTCAATA---TAAA--ATTGGC-CGA-AGACCGACAGATTGGTGTTCGAGTTCCA-ATTCTCAAAATT-TTATTTA-CGCTTAT-CTGATTCACTTG--TGA---TCG-AAAAGT-GGAA-GAAGAA--TATTGCATC-TG---GACATGC-C--A-GCTGCA-A-------CACAA------------A----GAAGGTCGACCCCGGCCGTA-----ATTTTTTCTCAATCCTAATTT--TAGCTTATAA-TTAAAATAAATTACATTTGCCCGCCTAAAATAAA--TAGGTTATATCTCATA-TGGATA---CCCATT
gi|10 : aaattgataggcgtgtgcggttttagcagtaaactcaaccactagttctgcatactcaatagccccactcaagtggaatctgcatttgtattttttattcttttgtggccaaaaattggacgtatttcaagccatttggccttttcattttttcacagccgcctcccccccccttttacttaagccaattagactgatacgtaaaaaggaatggctagaagagtgaaaggcttgtacaaatagtacacgtgcaaataatataacaataacacgtgcatcaatcacattgcaaaatttgctttattttacgatctcttgctgctgtggtatatagaactgctgatgaccatctttcccaagcacaatgtgcgttcttaattggaaaattgctgtggacgagctatgagcaaatgtgaaactaaaattaactatactgatcatatcatgaattttttcacccttatatacttaggggcaaaaatgaaccagctaatagggttatacggagctgataaataggggtggcatttccccccaatgcgggtcacatgaaaaagagcgatataaccagttaaacccacaagtacctgacaaggatgtgtcgaatgaatacgccaagccaggacttctgttaggacaacagcgcgggtagtgtaattcggaaaatctcacggctttctgcgaaaagcactaagacacgtgacgtcaacgtgacccctgacccctacgggctccggccaatctggccagtggtggacaagaactgttgatcgcaatcgcccttgtgaaagttttttccctataatTT-TG---TA-CG----T-CTG-CTCTCTT---TGAAT-TCG-CAAAGT-GAAA-G--GAA--GACTG-ATC-TG---GACATGCGC--A--------GATG----CACAA--------CAC-AT---GAAGGTCGAACCCGAC-GTA-----ATTTT--CCTAA-CCTAATTT--TAGCTTATAA-AT-AAATAGGTTA-ATTTG--CGCT--AAATAAC--CAGGTT-TATC-CATAGTGGATAAACCCT
gi|11 : tTT-TG---TA-CG----T-CTG-CTCTCTT---TGAAT-TCG-CAAAGT-GAAA-G--GAA--GACTG-ATC-TG---GACATGC----------CA-GATG-----ACAA--------CAC-AT---GAAGGTCGAACCCGAC-GTA-----ATTTT--CCTAA-CCTAATTT--TAGCTTAT-A-AT-AAAT--ATTA-AT-TG--CGCT--AAATAAC--CAGGTT-TATC-CATAGTGG-TAAACC
gi|12 : -TT---TA--G----T-CTG-CTATGTT---CAAAT------GAAGT-GATA-A--AAATGGATTA-CTC-TATATAACATGGGCTAATG----A-AATT----AAGAAGTT-----TGT-AT---GA----TGAACCCAAA-GTACATGTATTTT----TAA-CATAA--------CTCGTA--------TGAGTTA-AGC-G--CACG--AAATAAC--CAGGTT-CATC-CACATTGGATAAACCt
gi|13 : TT---TGAAT-TCG-CAAAGT-GAAA-G--GAA--GATTG-AGC-TG---GACATGCAC---TG-------ATG----CACAA--------CAC-AC---GAAGGTCGAACCCGAC-GTA-----ATTTT--CCTAA-CGTAATTT--TAGCTTATAA-ATAAAATAAATCA-A---G--CGCT--AAATAAC--CAGGTT-TATC-CATAGTGGATCAACCCTATTa
gi|14 : G----T-CTG-CTCTGTC---T--ATATGA-CGAAAT-GAAAAG--GAA--TACTACAT-------GACATACGC----GT-ACA-AATGAAGTTAAAA--------ATC-AT---GTATGACGAACCTGAA-GTG------TTTT--TATAA-CATACCGT-----------A-ATAAAGTA---------TG--------GAATAAC--CAGGTT-TATC-CATATTGGATAAACCC
gi|15 : ttagtA-CG----T-CTG-CTCCGAT---TGAAT---GACGGAAT-GAAA-A--GAA-----TT-AT-------GACATGCGC--AT----------------ACAA------------AT---AAAATTCTAATTT--T-GTA--------TT--CCGAA-CCCGATGCACTA-CTT-CAATATAAATTAAATTA-AGCTG--CACG--AAATAAC--CAGGTT-TATC-CTTATTAGATAAACCCc
gi|16 : A-CG----T-CTG-CTCCGAT---TGAAT---GACGGAAT-GAAA-A--GAA--------ATA-TG----ACATGCGC--ATAC---A-AAT------AAAA--------TTCTATTTTGTATGCCGAACCCGAT-GCA-------------------CT---------GCTT-TAATATAGAATAAATTA-AGCTG--CACG--AAATAAC--CAAGTT-TATC-CTTA
gi|17 : ta---TA-CA----T-CTG-CTCGA-T---TGAAT---G-CGGAAT-GAAA-G--AA------TT-AT-------GACATGCG-----GC-GTACAAT------AAAATTCTATTTCGT-AT---G-----CCAACACGAT-GCA-------------CTA---CT-----------TTATA----CAGATAAATTA-AGCTG--CACG--AAATAAC--CAGG-T-TATC-CAT--T--ATAAACCCtta
gi|19 : t-GCA-GATG----CACAA--------CAC-AT---GAAGGTCGAATCCGAC-GCA-----ATTTT--CCTA--CCTGATTT--TAGCTTATAA-ATAAAAAAGATTA-ATGTG--CGCT--AAATAAC--CAGG-T-TATC-CATAGTGGATAAACCCTATTAc
gi|2 : AATA-TGGGCTCTT-G-GCCGTTGATGTCCTGCTGGCACGCAAC--ACTTt
gi|20 : gtcttaaaacaattacatgatgggtgagagaaattgcatttgatgcatgtatgagattaattgcagctagatttactacaaatgctcagaaaattgtaatcataacacttacggggaccaagagattgtccttccttattggaagctaactgatgaaattgaagggggtagagggttgcatataaatcaaccacaattctgcatctaccgtagcccaactcaaagtggaatcccatgattttttgagccgaaattggacatcatatttaagccaattgcctttaattttttcacccccctccctttttattaaagtcatgtacctaaacaaaggaatggcttgagatgaatgcttccccaagtagaccgaagcaaatataataaatacatcgtttcattgcgaggaagttgctattttatgatctttgtgtttgtgtttggctttgacctgaatgaccccatcttcaaacgcaatgtggttcttaagagttgtagtggggtcatgatgcaaaagtgaaccaaaatcaacatactgatcattcatgattttttcctttataccttggggcaaatgaaccgctaatggggagacagagcttataaaagggttaggcattttccccaaagggtcacatgaaaatggggatgtaactgtacatgtacctgacgagcgatgtgtcgactgaatcgccaaggggactggtgtggcaacagtgggtggtgtaatctgaatatcctcaggttcctgcatgactttaacactggcacagctgtgtgtctccccacgtggtccctaggttcgggctggcaagttggtggacaaagaaacggtcgaaatcgctcttgatgaagttttccccctatAATAAGGTAAACTATTGACTCGAGCAAC--ACAAAT-GGCGCT--G--CACATCTTA--AAAATG-TG---GT-CG----T-CTG-CTCTCTTTCATGA---TAG-CGAAATAAAAA-G--GAA--GACT--ATG-T------CATGCGC--A
gi|21 : C-AT---AAAGGTCGAACCCGAC-ACA-----ATTTT--CCTAA-CCTAATTT--TAGCTTATAA-ATAAAATAAATCA-ATTTG--CGCT--AAATAAC--CAGGTT-TATC-CATAGTGGATAAACCCTATTAgat
gi|23 : aACTT--TAACT------ATAGAATAAATTA-AGCTG--CCCG--ACATAACATCAG--T-TATCTTATATTAGATAAACCCCAc
gi|25 : cataaatcaactaaaaatgtaattgacttcgcgggacAATTTTT--TCAATA---TAAA--ATTGGC-CGA-TGAC-AACATAT-GGTGCTCGA--TACG-ATTATTAAAATTGTG---TA-CG----T-CTG-CTCTCTT---TGAAT-TCG-CAAAGT-
gi|26 : TAAAATAAATTA-AGCTT--CACG--AAATAAT--CAGGTT-TATC-CTTATTAGACAAAC
gi|27 : ttatgtcgatttgtctgatctttttg-TGGGCTCTT-A-GCCTTTGATGTCCTGCTGGCAGGCAACGTACTTAAGTTTTT--TCAATA---
gi|4 : AATAATGGGCTCTTTG-GCCTTTGATGTCCTG--GGCACGCAACGTACTTAA-TTTTT--TCAATA---TAAA--ATTGGC-CGA-TGAC-GACAGAT-GGTGCTCGA--TACA-ATTATCAAATTT-TT---TAGCG----T-CTG--TCTCTT---TGAAT-TCG-CAAAGT-GAAA-G--GAA--GACTG-ATC-TG---GA------C--ATGC-GCA-GATG----CACAA--------CAC-AT---GAAGGTCGAA-CCGAC-GTA-----ATTTT----TAA-CCTA
gi|5 : cccttatatttgggcaaatgaacgctaatggggtcaggagctgataaagggttggcatttcccccaaagggtcacgtgaaaggggggaatataactacatagcatacatgtacctgagagcgatgtggtcgactgaatcgccaaggggggactggtgtggcaacagcgggtggtgtaaatcgaattatcctcaggttcctgcaaagacttgaacactgacactgccgtggcgtctccccacgtggtcctggttcgagctggcaagttggtggacaaaaaacggtaacatcgcccttgatgaagtttttccctatAATA-TGGGCTCTT-A-GCCTTTGATATCCTGCTGGCACGCAACGTACTTAAATTGTT--TCAATA---TAAA--ATTGGC-CGA-TGAC-GACAGAT-GGTGCTCGA--TACA-ACTATCAAAATT-TT---TA-CG----T-CTG-CTCTCTT---TGAAT-TCG-CAAAGT-GAAA-G--GAA--GACTG-ATC-TG---GACATGCGCAAATGC-GCA-AATG----CAAAA--------CAC-AT---GAAGGTCGAACCCGAC-GTA-----ATTTT--CCTAA-CCTGATTT--TAGCTTATAA-ATAAAATCGGTTA-ATTTG--CGCT--AAATAAC--CAGGTT-TATC-CATAGTGGATAAACCCTAATAt
gi|6 : AATA-TGGGCTCTT-A-GCCTTTGATATCCTGCTGGCACGCAACGT
gi|7 : aaggggactggtgtggcaacagcgggtggtgcaatccgaatatcgagaaaaaacttcattcaagtggcgatgttgacccgtttcagttgccaccaacttgcaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttccctatAAATT-TA----A-CG----TACTG-CCTCCTT---GGAGT-TTG-TAAAGA-GAAA-G--GAA--GA-TG-TTCATT---GACATG------TGC-GCA-GATG----CACAAA-------CTT-CT---AAAGGCCGAACCCGAC-GCA-----ATTTC--CC--A-CCTCATCTA-TACCTAATAA-TTGAACTAAATTA---TTA--GGCT--AAATAAC--TAGG-T-TAT--CATAGT-GATAAACCCTAATA
gi|9 : T-TT---TA-CG----T-CTG-CTCTCTT---TGAAT-TCG-CAAAGT-GAAA-G--GAA--GACTG-ATC-TG---GACATG--------C-GCA-AATG----CACAA--------CAC-AT---GAAGGTCGAACCCGAC-GTA-----ATTTT--CCTAA-CCTAATTT--TAGCTTATAA-ATAAAATAGGTTA-ATTTG--CGCT--AAATAAC--CAGGTT-TATC-CATAGTGGATAAACCCTAT
7 sequences could not be aligned to this reference sequence:
Unaligned ( gi|3 ): AGTAGGAGTTGCATTAGCCTTGTAACATTTAACTAATGAATGGAAACCAGAGCATTTAAGACAACTGTGCAAATAATTACAATTTGGCTTGTTACAGACACCCTGGTAGTTAAAATCATAGCATTTATTGCGGGGCTGTACTGACTGCTGATGTGGAACATTATCAGGAGTTGATGGTTGCATGTACATCATCCATAACTCTACATCCACTGACGCCCAACTTAGTGAAGTATTGTAAGATTTCTTGAGCCGAAATTGAACATCATAATCTAACCAATTGCCTTTGACCTTCTCCGCTCCCCTTTTATCAAGGTCATATATCTAAACATTGGGATTGCTTGCGTTGGATGTTTGACCAAAAAACAGATGTAAATATTGCAAAAGCATCCAGCCATTGAGACAAATTTGAAATCTTTGTTCCTTCTGGTTGGGTTTGACCTGAAATAAGCCATCCTCAAACACCACCTGATTCTGTTGTGTTGAAGTGTGGGTCATGAAAAAGGAGGCTACCAAAATTGCAAAATTGATTATTGCAAATTTTGTCTCTCAGGCTTTGAGGCAAATGCACCGCTAGCGGTGAAACCACACTCATAAATGGGTTAGGTAAAATATCTAACGGGTCAAATTGAA
Unaligned ( gi|8 ): GCATTTGATACAGAATTGAATGTAAGTCCCATTTGGTGTGTTACAAATACCATGGTGATTGTAAGCGTAACATTTAGAGTGTTCACCTGATGATTTGTCAAATTTGGGAGAAATTGAATATAAATGATCCACAACTCCGCATCAACTGAAGCCCAAGACAATGAAATGTCGTAGGATTTT
Unaligned ( gi|18 ): ATCAGATGCAAAAGTGAACCAAAATCAACATACAGATCATTCATGATTGTTTCCCTTATATCTTGGGGCAAATGAACCGCTAATAGGGTCACGGAGCTGATAAAGGGTTAGGTATTTCCCCCAAA
Unaligned ( gi|22 ): TATGGACTCCGAGACTTTGATGCCTCTTGATGCACGAAGCATTTTTTGACTTTTTGATGACCACAAATTAGTGATGGCAATCGATTAAATCTAAAAAAAAAAAAA
Unaligned ( gi|24 ): ATACGGATTCTTAGCCTTCGAAGCCTTGGATACGCAAAGCATATTTAAGTTTAACTATCGATAAAGTATCCGATGACAGACGATTGAATCTTATACATACT
Unaligned ( gi|28 ): TAACTACATACATACATGTACCTGACGAGCCATGTGTCGACTGAATCGCCAAG
Unaligned ( gi|29 ): ACCAAAATCAACATACTGATCATTGATGATTCTTTCC
Alignments
lowQualScore : 111 11 111 11 11 11 11 1111111 333333333333 111111 2222222222 111111
lowQualScore : 6 111 1 3 11 111 11 8 22 11 8 11 8 0 4 7777 3 6666 2 2 777 777 5 2 2 33 666 2 66 0000000 444444444444 2 000000 6666666666 2 444 2 000000 444 2 2 66 1 1 5 1 2 99 33 555 33 1 2 5 3
lowQualScore : . ... . . .. ... .. . .. .. . .. . . . .... . .... . . ... ... . . . .. ... . .. ....... ............ . ...... .......... . ... . ...... ... . . .. . . . . . .. .. ... .. . . . .
lowQualScore : 7 333 0 8 00 777 00 0 66 22 0 00 0 8 0 4444 1 1111 9 9 333 888 3 7 9 99 444 4 99 1111111 000000000000 9 444444 4444444444 7 777 7 777777 777 7 1 33 1 7 3 1 5 00 44 999 44 7 5 0 3
consensus : AATA-TGGGCTCTT-G-GCCTTTGATGTCCTGCTGGCACGCAACGTACTTAAATTTTT--TCAATA---TAAA--ATTGGC-CGA-CGAC-GACAGAT-GGTGCTCGA--TACA-ATTATCAAAATT-TN---TA-CG----T-CTG-CTCTCTT---TGAAT-TCG-CGAAGT-GAAA-G--GAA--GACTG-ATC-TG---GACATGCGC--ATGC-GCA-AATG----CACAA--------CGC-AT---GAAGGTCGAACCCGAC-GTA-----ATTTT--CCTAA-CCTAATTT--TAGCTTATAA-ATAAAATAAATTA-ANCTG--CGCT--AAATAAC--CAGGTT-TATC-CATAGTGGATAAACCCTATTA
Reference ( family-837 ) : AATA-TGGGCTCTT-G-GCCTTTGATGTCCTGCTGGCACGCAACGTACTTAAATTTTT--TCAATA---TAAA--ATTGGC-CGA-CGAC-GACAGAT-GGTGCTCGA--TACA-ATTATCAAAATT-TN---TA-CG----T-CTG-CTCTCTT---TGAAT-TCG-CGAAGT-GAAA-G--GAA--GACTG-ATC-TG---GACATGCGC--ATGC-GCA-AATG----CACAA--------CGC-AT---GAAGGTCGAACCCGAC-GTA-----ATTTT--CCTAA-CCTAATTT--TAGCTTATAA-ATAAAATAAATTA-ANCTG--CGCT--AAATAAC--CAGGTT-TATC-CATAGTGGATAAACCCTATTA
gi|1 : AATG-CGAGCGCTT-GTGCCTTTGATGTCC-GCTAGCACGCA-CATACTTTAATTTTTATTCAATA---TAAA--ATTGGC-CGA-AGACCGACAGATTGGTGTTCGAGTTCCA-ATTCTCAAAATT-TTATTTA-CGCTTAT-CTGATTCACTTG--TGA---TCG-AAAAGT-GGAA-GAAGAA--TATTGCATC-TG---GACATGC-C--A-GCTGCA-A-------CACAA------------A----GAAGGTCGACCCCGGCCGTA-----ATTTTTTCTCAATCCTAATTT--TAGCTTATAA-TTAAAATAAATTACATTTGCCCGCCTAAAATAAA--TAGGTTATATCTCATA-TGGATA---CCCATT
gi|10 : aaattgataggcgtgtgcggttttagcagtaaactcaaccactagttctgcatactcaatagccccactcaagtggaatctgcatttgtattttttattcttttgtggccaaaaattggacgtatttcaagccatttggccttttcattttttcacagccgcctcccccccccttttacttaagccaattagactgatacgtaaaaaggaatggctagaagagtgaaaggcttgtacaaatagtacacgtgcaaataatataacaataacacgtgcatcaatcacattgcaaaatttgctttattttacgatctcttgctgctgtggtatatagaactgctgatgaccatctttcccaagcacaatgtgcgttcttaattggaaaattgctgtggacgagctatgagcaaatgtgaaactaaaattaactatactgatcatatcatgaattttttcacccttatatacttaggggcaaaaatgaaccagctaatagggttatacggagctgataaataggggtggcatttccccccaatgcgggtcacatgaaaaagagcgatataaccagttaaacccacaagtacctgacaaggatgtgtcgaatgaatacgccaagccaggacttctgttaggacaacagcgcgggtagtgtaattcggaaaatctcacggctttctgcgaaaagcactaagacacgtgacgtcaacgtgacccctgacccctacgggctccggccaatctggccagtggtggacaagaactgttgatcgcaatcgcccttgtgaaagttttttccctataatTT-TG---TA-CG----T-CTG-CTCTCTT---TGAAT-TCG-CAAAGT-GAAA-G--GAA--GACTG-ATC-TG---GACATGCGC--A--------GATG----CACAA--------CAC-AT---GAAGGTCGAACCCGAC-GTA-----ATTTT--CCTAA-CCTAATTT--TAGCTTATAA-AT-AAATAGGTTA-ATTTG--CGCT--AAATAAC--CAGGTT-TATC-CATAGTGGATAAACCCT
gi|11 : tTT-TG---TA-CG----T-CTG-CTCTCTT---TGAAT-TCG-CAAAGT-GAAA-G--GAA--GACTG-ATC-TG---GACATGC----------CA-GATG-----ACAA--------CAC-AT---GAAGGTCGAACCCGAC-GTA-----ATTTT--CCTAA-CCTAATTT--TAGCTTAT-A-AT-AAAT--ATTA-AT-TG--CGCT--AAATAAC--CAGGTT-TATC-CATAGTGG-TAAACC
gi|12 : -TT---TA--G----T-CTG-CTATGTT---CAAAT------GAAGT-GATA-A--AAATGGATTA-CTC-TATATAACATGGGCTAATG----A-AATT----AAGAAGTT-----TGT-AT---GA----TGAACCCAAA-GTACATGTATTTT----TAA-CATAA--------CTCGTA--------TGAGTTA-AGC-G--CACG--AAATAAC--CAGGTT-CATC-CACATTGGATAAACCt
gi|13 : TT---TGAAT-TCG-CAAAGT-GAAA-G--GAA--GATTG-AGC-TG---GACATGCAC---TG-------ATG----CACAA--------CAC-AC---GAAGGTCGAACCCGAC-GTA-----ATTTT--CCTAA-CGTAATTT--TAGCTTATAA-ATAAAATAAATCA-A---G--CGCT--AAATAAC--CAGGTT-TATC-CATAGTGGATCAACCCTATTa
gi|14 : G----T-CTG-CTCTGTC---T--ATATGA-CGAAAT-GAAAAG--GAA--TACTACAT-------GACATACGC----GT-ACA-AATGAAGTTAAAA--------ATC-AT---GTATGACGAACCTGAA-GTG------TTTT--TATAA-CATACCGT-----------A-ATAAAGTA---------TG--------GAATAAC--CAGGTT-TATC-CATATTGGATAAACCC
gi|15 : ttagtA-CG----T-CTG-CTCCGAT---TGAAT---GACGGAAT-GAAA-A--GAA-----TT-AT-------GACATGCGC--AT----------------ACAA------------AT---AAAATTCTAATTT--T-GTA--------TT--CCGAA-CCCGATGCACTA-CTT-CAATATAAATTAAATTA-AGCTG--CACG--AAATAAC--CAGGTT-TATC-CTTATTAGATAAACCCc
gi|16 : A-CG----T-CTG-CTCCGAT---TGAAT---GACGGAAT-GAAA-A--GAA--------ATA-TG----ACATGCGC--ATAC---A-AAT------AAAA--------TTCTATTTTGTATGCCGAACCCGAT-GCA-------------------CT---------GCTT-TAATATAGAATAAATTA-AGCTG--CACG--AAATAAC--CAAGTT-TATC-CTTA
gi|17 : ta---TA-CA----T-CTG-CTCGA-T---TGAAT---G-CGGAAT-GAAA-G--AA------TT-AT-------GACATGCG-----GC-GTACAAT------AAAATTCTATTTCGT-AT---G-----CCAACACGAT-GCA-------------CTA---CT-----------TTATA----CAGATAAATTA-AGCTG--CACG--AAATAAC--CAGG-T-TATC-CAT--T--ATAAACCCtta
gi|19 : t-GCA-GATG----CACAA--------CAC-AT---GAAGGTCGAATCCGAC-GCA-----ATTTT--CCTA--CCTGATTT--TAGCTTATAA-ATAAAAAAGATTA-ATGTG--CGCT--AAATAAC--CAGG-T-TATC-CATAGTGGATAAACCCTATTAc
gi|2 : AATA-TGGGCTCTT-G-GCCGTTGATGTCCTGCTGGCACGCAAC--ACTTt
gi|20 : gtcttaaaacaattacatgatgggtgagagaaattgcatttgatgcatgtatgagattaattgcagctagatttactacaaatgctcagaaaattgtaatcataacacttacggggaccaagagattgtccttccttattggaagctaactgatgaaattgaagggggtagagggttgcatataaatcaaccacaattctgcatctaccgtagcccaactcaaagtggaatcccatgattttttgagccgaaattggacatcatatttaagccaattgcctttaattttttcacccccctccctttttattaaagtcatgtacctaaacaaaggaatggcttgagatgaatgcttccccaagtagaccgaagcaaatataataaatacatcgtttcattgcgaggaagttgctattttatgatctttgtgtttgtgtttggctttgacctgaatgaccccatcttcaaacgcaatgtggttcttaagagttgtagtggggtcatgatgcaaaagtgaaccaaaatcaacatactgatcattcatgattttttcctttataccttggggcaaatgaaccgctaatggggagacagagcttataaaagggttaggcattttccccaaagggtcacatgaaaatggggatgtaactgtacatgtacctgacgagcgatgtgtcgactgaatcgccaaggggactggtgtggcaacagtgggtggtgtaatctgaatatcctcaggttcctgcatgactttaacactggcacagctgtgtgtctccccacgtggtccctaggttcgggctggcaagttggtggacaaagaaacggtcgaaatcgctcttgatgaagttttccccctatAATAAGGTAAACTATTGACTCGAGCAAC--ACAAAT-GGCGCT--G--CACATCTTA--AAAATG-TG---GT-CG----T-CTG-CTCTCTTTCATGA---TAG-CGAAATAAAAA-G--GAA--GACT--ATG-T------CATGCGC--A
gi|21 : C-AT---AAAGGTCGAACCCGAC-ACA-----ATTTT--CCTAA-CCTAATTT--TAGCTTATAA-ATAAAATAAATCA-ATTTG--CGCT--AAATAAC--CAGGTT-TATC-CATAGTGGATAAACCCTATTAgat
gi|23 : aACTT--TAACT------ATAGAATAAATTA-AGCTG--CCCG--ACATAACATCAG--T-TATCTTATATTAGATAAACCCCAc
gi|25 : cataaatcaactaaaaatgtaattgacttcgcgggacAATTTTT--TCAATA---TAAA--ATTGGC-CGA-TGAC-AACATAT-GGTGCTCGA--TACG-ATTATTAAAATTGTG---TA-CG----T-CTG-CTCTCTT---TGAAT-TCG-CAAAGT-
gi|26 : TAAAATAAATTA-AGCTT--CACG--AAATAAT--CAGGTT-TATC-CTTATTAGACAAAC
gi|27 : ttatgtcgatttgtctgatctttttg-TGGGCTCTT-A-GCCTTTGATGTCCTGCTGGCAGGCAACGTACTTAAGTTTTT--TCAATA---
gi|4 : AATAATGGGCTCTTTG-GCCTTTGATGTCCTG--GGCACGCAACGTACTTAA-TTTTT--TCAATA---TAAA--ATTGGC-CGA-TGAC-GACAGAT-GGTGCTCGA--TACA-ATTATCAAATTT-TT---TAGCG----T-CTG--TCTCTT---TGAAT-TCG-CAAAGT-GAAA-G--GAA--GACTG-ATC-TG---GA------C--ATGC-GCA-GATG----CACAA--------CAC-AT---GAAGGTCGAA-CCGAC-GTA-----ATTTT----TAA-CCTA
gi|5 : cccttatatttgggcaaatgaacgctaatggggtcaggagctgataaagggttggcatttcccccaaagggtcacgtgaaaggggggaatataactacatagcatacatgtacctgagagcgatgtggtcgactgaatcgccaaggggggactggtgtggcaacagcgggtggtgtaaatcgaattatcctcaggttcctgcaaagacttgaacactgacactgccgtggcgtctccccacgtggtcctggttcgagctggcaagttggtggacaaaaaacggtaacatcgcccttgatgaagtttttccctatAATA-TGGGCTCTT-A-GCCTTTGATATCCTGCTGGCACGCAACGTACTTAAATTGTT--TCAATA---TAAA--ATTGGC-CGA-TGAC-GACAGAT-GGTGCTCGA--TACA-ACTATCAAAATT-TT---TA-CG----T-CTG-CTCTCTT---TGAAT-TCG-CAAAGT-GAAA-G--GAA--GACTG-ATC-TG---GACATGCGCAAATGC-GCA-AATG----CAAAA--------CAC-AT---GAAGGTCGAACCCGAC-GTA-----ATTTT--CCTAA-CCTGATTT--TAGCTTATAA-ATAAAATCGGTTA-ATTTG--CGCT--AAATAAC--CAGGTT-TATC-CATAGTGGATAAACCCTAATAt
gi|6 : AATA-TGGGCTCTT-A-GCCTTTGATATCCTGCTGGCACGCAACGT
gi|7 : aaggggactggtgtggcaacagcgggtggtgcaatccgaatatcgagaaaaaacttcattcaagtggcgatgttgacccgtttcagttgccaccaacttgcaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttccctatAAATT-TA----A-CG----TACTG-CCTCCTT---GGAGT-TTG-TAAAGA-GAAA-G--GAA--GA-TG-TTCATT---GACATG------TGC-GCA-GATG----CACAAA-------CTT-CT---AAAGGCCGAACCCGAC-GCA-----ATTTC--CC--A-CCTCATCTA-TACCTAATAA-TTGAACTAAATTA---TTA--GGCT--AAATAAC--TAGG-T-TAT--CATAGT-GATAAACCCTAATA
gi|9 : T-TT---TA-CG----T-CTG-CTCTCTT---TGAAT-TCG-CAAAGT-GAAA-G--GAA--GACTG-ATC-TG---GACATG--------C-GCA-AATG----CACAA--------CAC-AT---GAAGGTCGAACCCGAC-GTA-----ATTTT--CCTAA-CCTAATTT--TAGCTTATAA-ATAAAATAGGTTA-ATTTG--CGCT--AAATAAC--CAGGTT-TATC-CATAGTGGATAAACCCTAT
blockSeqs : A TG G A . AGG CT T GC A . . T G G G . A . TCA ATG A A A . TGG C AC CTATAT CGCAAATGCGC C GAAGTT TTCTATTTCG T TTT . CATGTA C . A AC G A T A . TT . T AT T . T G
blockSeqs : . G G G . . . . T G . . . . G . . . . . TC A . . . G C G CATT GGCTAATG . GC GTTTG . . . A C . A A G A T A . GC . T . T . . G
blockSeqs : . A G A . . . . T G . . . . T . . . . . TC . . . . G T G CTG CGCGTAC . TA ACT . . . A C . A . G G . A . GC . G . T . . T
blockSeqs : . A G . . . . . T . . . . . G . . . . . TC . . . . G T A CTG CGCATAC . GC CA . . . A T . A . G A . A . GC . T . T . . G
blockSeqs : . A . . . G . . . . . TA . . . . T C G CTG CATGCGC . GC CA . . . A C . A . G A . C . GC . G . T . . T
blockSeqs : . T . . . . . TC . . . . G C T ATG CGGCGT . GC CA . . . A C . G . G A . A . TG . G . T . . T
blockSeqs : . T . . . . . TC . . . . G C T CTG CACTG . GC AT . . . A C . G . A A . A . TT . G . T . . G
blockSeqs : . A . . . . . TC . . . . G C G CTG CGCAT . GC TT . . . A C . A . G A . A . GC . T . T . . G
blockSeqs : . T . . . . . TT . . . . G C G CTG TGCGC . GC CA . . . A C . A . C A . A . GC . T . T . . T
blockSeqs : . . . . . TC . . . . G . G GT CGCA . G CA . . . A C . G . G A . A . TT . G . T . . T
blockSeqs : . . . . . . . . . . . . G . CGC . . CA . . . . . . C . . . . G . TT . G . T . . G
blockSeqs : . . . . . . . . . . . . . . CC . . CA . . . . . . A . . . . A . T . T . . . . G
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . . . . . . . . T . T . . . . G
blockSeqs : . . . . . . . . . . . . . . . . . . . T . . . . .
blockSeqs : . . . . . . . . .
blockSeqCons : A** ** G* ** N*** **** *** ** G* CGCGC******* GC**** CA******** C** ** T**
originalCons : AATA-TGGGCTCTT-G-GCCTTTGATGTCCTGCTGGCACGCAACGTACTTAAATTTTT--TCAATA---TAAA--ATTGGC-CGA-CGAC-GACAGAT-GGTGCTCGA--TACA-ATTATCAAAATT-TN---TA-CG----T-CTG-CTCTCTT---TGAAT-TCG-CGAAGT-GAAA-G--GAA--GACTG-ATC-TG---GACATGCGC--ATGC-GCA-AATG----CACAA--------CGC-AT---GAAGGTCGAACCCGAC-GTA-----ATTTT--CCTAA-CCTAATTT--TAGCTTATAA-ATAAAATAAATTA-ANCTG--CGCT--AAATAAC--CAGGTT-TATC-CATAGTGGATAAACCCTATTA
finalCons : AATA-TGGGCTCTTA--GCCTTTGATGTCCTGCTGGCACGCAACGTACTTAAATTTTT--TCAATA---TAAA--ATTGGC-CGA-CGACG-ACAGAT-GGTGCTCGA--TACA-ATTATCAAAATT-TN---TA-CG----T-CTG-CTCTCTT---TGAAT-TCG-CGAAGT-GAAA-G--GAA--GACTG-ATC-TG---GACATGCGCGC-------A-AATGC----ACAACA--------C-AT---GAAGGTCGAACCCGAC-GTA-----ATTTTC--CTAA-CCTAATTT--TAGCTTATAA-ATAAAATAAATTA-ANCTG--CGCT--AAATAAC--CAGGTT-TATC-CATAGTGGATAAACCCTATTA
7 sequences could not be aligned to this reference sequence:
Unaligned ( gi|3 ): AGTAGGAGTTGCATTAGCCTTGTAACATTTAACTAATGAATGGAAACCAGAGCATTTAAGACAACTGTGCAAATAATTACAATTTGGCTTGTTACAGACACCCTGGTAGTTAAAATCATAGCATTTATTGCGGGGCTGTACTGACTGCTGATGTGGAACATTATCAGGAGTTGATGGTTGCATGTACATCATCCATAACTCTACATCCACTGACGCCCAACTTAGTGAAGTATTGTAAGATTTCTTGAGCCGAAATTGAACATCATAATCTAACCAATTGCCTTTGACCTTCTCCGCTCCCCTTTTATCAAGGTCATATATCTAAACATTGGGATTGCTTGCGTTGGATGTTTGACCAAAAAACAGATGTAAATATTGCAAAAGCATCCAGCCATTGAGACAAATTTGAAATCTTTGTTCCTTCTGGTTGGGTTTGACCTGAAATAAGCCATCCTCAAACACCACCTGATTCTGTTGTGTTGAAGTGTGGGTCATGAAAAAGGAGGCTACCAAAATTGCAAAATTGATTATTGCAAATTTTGTCTCTCAGGCTTTGAGGCAAATGCACCGCTAGCGGTGAAACCACACTCATAAATGGGTTAGGTAAAATATCTAACGGGTCAAATTGAA
Unaligned ( gi|8 ): GCATTTGATACAGAATTGAATGTAAGTCCCATTTGGTGTGTTACAAATACCATGGTGATTGTAAGCGTAACATTTAGAGTGTTCACCTGATGATTTGTCAAATTTGGGAGAAATTGAATATAAATGATCCACAACTCCGCATCAACTGAAGCCCAAGACAATGAAATGTCGTAGGATTTT
Unaligned ( gi|18 ): ATCAGATGCAAAAGTGAACCAAAATCAACATACAGATCATTCATGATTGTTTCCCTTATATCTTGGGGCAAATGAACCGCTAATAGGGTCACGGAGCTGATAAAGGGTTAGGTATTTCCCCCAAA
Unaligned ( gi|22 ): TATGGACTCCGAGACTTTGATGCCTCTTGATGCACGAAGCATTTTTTGACTTTTTGATGACCACAAATTAGTGATGGCAATCGATTAAATCTAAAAAAAAAAAAA
Unaligned ( gi|24 ): ATACGGATTCTTAGCCTTCGAAGCCTTGGATACGCAAAGCATATTTAAGTTTAACTATCGATAAAGTATCCGATGACAGACGATTGAATCTTATACATACT
Unaligned ( gi|28 ): TAACTACATACATACATGTACCTGACGAGCCATGTGTCGACTGAATCGCCAAG
Unaligned ( gi|29 ): ACCAAAATCAACATACTGATCATTGATGATTCTTTCC
Alignments
lowQualScore : 111 111 11 11 111 1111111 222222222222222 11111111 11
lowQualScore : 5 666 4 66 66 2 2 000 77 000 99 6 11 6 77 6 11 8 0 111 1 3 6666 2 2 777 777 5 2 2 33 666 2 66 0000000 444444444444444 7 33 3 33 99 444 444 5555 2 44444444 1 2 00 1 1 5 1 2 99 33 555 33 1 2 5 3
lowQualScore : . ... . .. .. . . ... .. ... .. . .. . .. . .. . . ... . . .... . . ... ... . . . .. ... . .. ....... ............... . .. . .. .. ... ... .... . ........ . . .. . . . . . .. .. ... .. . . . .
lowQualScore : 0 666 5 99 99 2 3 000 99 000 22 7 55 7 77 7 00 0 8 000 0 1 1111 9 9 333 888 3 7 9 99 444 4 99 1111111 555555555555555 2 99 0 77 00 777 777 7777 7 44444444 1 7 00 1 7 3 1 5 00 44 999 44 7 5 0 3
consensus : AATA-TGGGCTCTT-A-GCCTTTGATGTCCTGCTG--GCACGCAA--CGTACTTAAATTT---TT--TCAATA---TAAA--ATTGGC-CGA-TGA-C-GACAGA-TGGTGCTCGA--TACA-ATTATCAAAATT---TNTA-CG----T-CTG-CTCTCTT---TGAAT-TCG-CGAAGT-GAAA-G--GAA--GACTG-ATC-TG---GACATGC------GC-G--CAGATGCA--CAACA--C--AT---GAAG---GT----CGAACCCGA-CGTA-----A--TTTTCCTAA-CCTAATTT--TAGCTTATAA-ATAAAATAAATTA-ANCTG--CGCT--AAATAAC--CAGGTT-TATC-CATAGTGGATAAACCCTATTA
Reference ( family-837 ) : AATA-TGGGCTCTT-A-GCCTTTGATGTCCTGCTG--GCACGCAA--CGTACTTAAATTT---TT--TCAATA---TAAA--ATTGGC-CGA-CGA-C-GACAGA-TGGTGCTCGA--TACA-ATTATCAAAATT---TNTA-CG----T-CTG-CTCTCTT---TGAAT-TCG-CGAAGT-GAAA-G--GAA--GACTG-ATC-TG---GACATGC------GC-G--CAAATGCA--CAACA--C--AT---GAAG---GT----CGAACCCGA-CGTA-----A--TTTTCCTAA-CCTAATTT--TAGCTTATAA-ATAAAATAAATTA-ANCTG--CGCT--AAATAAC--CAGGTT-TATC-CATAGTGGATAAACCCTATTA
gi|1 : AATG-CGAGCGCTT-GTGCCTTTGATGTCC-GCTA--GCACGCA---CATACTTTAATTT---TTATTCAATA---TAAA--ATTGGC-CGA-AGACC-GACAGATTGGTGTTCGAGTTCCA-ATTCTCAAAATTTTATTTA-CGCTTAT-CTGATTCACTTG--TGA---TCG-AAAAGT-GGAA-GAAGAA--TATTGCATC-TG---GACATGC------------CAGCTG----CAACA--CA-AA---GAAG---GT----CGACCCCGGCCGTA-----ATTTTTTCTCAATCCTAATTT--TAGCTTATAA-TTAAAATAAATTACATTTGCCCGCCTAAAATAAA--TAGGTTATATCTCATA-TGGATA---CCCATT
gi|10 : aaattgataggcgtgtgcggttttagcagtaaactcaaccactagttctgcatactcaatagccccactcaagtggaatctgcatttgtattttttattcttttgtggccaaaaattggacgtatttcaagccatttggccttttcattttttcacagccgcctcccccccccttttacttaagccaattagactgatacgtaaaaaggaatggctagaagagtgaaaggcttgtacaaatagtacacgtgcaaataatataacaataacacgtgcatcaatcacattgcaaaatttgctttattttacgatctcttgctgctgtggtatatagaactgctgatgaccatctttcccaagcacaatgtgcgttcttaattggaaaattgctgtggacgagctatgagcaaatgtgaaactaaaattaactatactgatcatatcatgaattttttcacccttatatacttaggggcaaaaatgaaccagctaatagggttatacggagctgataaataggggtggcatttccccccaatgcgggtcacatgaaaaagagcgatataaccagttaaacccacaagtacctgacaaggatgtgtcgaatgaatacgccaagccaggacttctgttaggacaacagcgcgggtagtgtaattcggaaaatctcacggctttctgcgaaaagcactaagacacgtgacgtcaacgtgacccctgacccctacgggctccggccaatctggccagtggtggacaagaactgttgatcgcaatcgcccttgtgaaagttttttccctataatTT---TGTA-CG----T-CTG-CTCTCTT---TGAAT-TCG-CAAAGT-GAAA-G--GAA--GACTG-ATC-TG---GACATGC------GC-----AGATGCA--CAACA--C--AT---GAAG---GT----CGAACCCGA-CGTA-----A--TTTTCCTAA-CCTAATTT--TAGCTTATAA-AT-AAATAGGTTA-ATTTG--CGCT--AAATAAC--CAGGTT-TATC-CATAGTGGATAAACCCT
gi|11 : tTT---TGTA-CG----T-CTG-CTCTCTT---TGAAT-TCG-CAAAGT-GAAA-G--GAA--GACTG-ATC-TG---GACATGC------------CAGATG-A--CAACA--C--AT---GAAG---GT----CGAACCCGA-CGTA-----A--TTTTCCTAA-CCTAATTT--TAGCTTAT-A-AT-AAAT--ATTA-AT-TG--CGCT--AAATAAC--CAGGTT-TATC-CATAGTGG-TAAACC
gi|12 : ---TTTA--G----T-CTG-CTATGTT---CAAAT------GAAGT-GATA-A--AAATGGATTA-CTC-TATATAACATG-------G--G--CTAATG-----AAAT--T--AA---GAAGTTTGTATGATGAACCCAA-AGTACATGTA--TTTT--TAA-CATAA--------CTCGTA--------TGAGTTA-AGC-G--CACG--AAATAAC--CAGGTT-CATC-CACATTGGATAAACCt
gi|13 : TT---TGAAT-TCG-CAAAGT-GAAA-G--GAA--GATTG-AGC-TG---GACATGC------ACTG-----ATGCA--CAACA--C--AC---GAAG---GT----CGAACCCGA-CGTA-----A--TTTTCCTAA-CGTAATTT--TAGCTTATAA-ATAAAATAAATCA-A---G--CGCT--AAATAAC--CAGGTT-TATC-CATAGTGGATCAACCCTATTa
gi|14 : G----T-CTG-CTCTGTC---T--ATATGA-CGAAAT-GAAAAG--GAA--TACTACAT-------GACATAC------GC-GTACAAATGAAGTTAAAAATC--AT---GTAT---GA----CGAACCTGA-AGTG--------TTTTTATAA-CATACCGT-----------A-ATAAAGTA---------TG--------GAATAAC--CAGGTT-TATC-CATATTGGATAAACCC
gi|15 : ttagtA-CG----T-CTG-CTCCGAT---TGAAT---GACGGAAT-GAAA-A--GAA-----TT-AT-------GACATGC------GC-------AT--A--CAA-------AT---AAAA---TT----CTAATTT---TGTA----------TTCCGAA-CCCGATGCACTA-CTT-CAATATAAATTAAATTA-AGCTG--CACG--AAATAAC--CAGGTT-TATC-CTTATTAGATAAACCCc
gi|16 : A-CG----T-CTG-CTCCGAT---TGAAT---GACGGAAT-GAAA-A--GAA--------ATA-TG----ACATGC------GC-ATACAAAT--A--AAATT--CT-ATTTTGTAT---GC----CGAACCCGA-TGCA-------------------CT---------GCTT-TAATATAGAATAAATTA-AGCTG--CACG--AAATAAC--CAAGTT-TATC-CTTA
gi|17 : taTA-CA----T-CTG-CTCGATT----GAAT---G-CGGAAT-GAAA-G--AA------TT-AT-------GACATGC------G--G--C----GTA--CAATA-----------AAA---TT----CTATTTCG----TA-----------TGCCAA-CACGATGCACTACTTTATAC-A---GATAAATTA-AGCTG--CACG--AAATAAC--CAGG-T-TATC-CAT--T--ATAAACCCtta
gi|19 : t-G--CAGATGCA--CAACA--C--AT---GAAG---GT----CGAATCCGA-CGCA-----A--TTTTCCTA--CCTGATTT--TAGCTTATAA-ATAAAAAAGATTA-ATGTG--CGCT--AAATAAC--CAGG-T-TATC-CATAGTGGATAAACCCTATTAc
gi|2 : AATA-TGGGCTCTT-G-GCCGTTGATGTCCTGCTG--GCACGCAA--C--ACTTt
gi|20 : gtcttaaaacaattacatgatgggtgagagaaattgcatttgatgcatgtatgagattaattgcagctagatttactacaaatgctcagaaaattgtaatcataacacttacggggaccaagagattgtccttccttattggaagctaactgatgaaattgaagggggtagagggttgcatataaatcaaccacaattctgcatctaccgtagcccaactcaaagtggaatcccatgattttttgagccgaaattggacatcatatttaagccaattgcctttaattttttcacccccctccctttttattaaagtcatgtacctaaacaaaggaatggcttgagatgaatgcttccccaagtagaccgaagcaaatataataaatacatcgtttcattgcgaggaagttgctattttatgatctttgtgtttgtgtttggctttgacctgaatgaccccatcttcaaacgcaatgtggttcttaagagttgtagtggggtcatgatgcaaaagtgaaccaaaatcaacatactgatcattcatgattttttcctttataccttggggcaaatgaaccgctaatggggagacagagcttataaaagggttaggcattttccccaaagggtcacatgaaaatggggatgtaactgtacatgtacctgacgagcgatgtgtcgactgaatcgccaaggggactggtgtggcaacagtgggtggtgtaatctgaatatcctcaggttcctgcatgactttaacactggcacagctgtgtgtctccccacgtggtccctaggttcgggctggcaagttggtggacaaagaaacggtcgaaatcgctcttgatgaagttttccccctatAATAAGGTAAACTATTGACTCGAGCAA-C--ACAAA-TGGCGCT--G--CACATCTTA--AAAATG---TGGT-CG----T-CTG-CTCTCTTTCATGA---TAG-CGAAATAAAAA-G--GAA--GACT--ATG-T------CATGC------GC-
gi|21 : A--C--AT---AAAG---GT----CGAACCCGA-CACA-----A--TTTTCCTAA-CCTAATTT--TAGCTTATAA-ATAAAATAAATCA-ATTTG--CGCT--AAATAAC--CAGGTT-TATC-CATAGTGGATAAACCCTATTAagat
gi|22 : TA-TGGACTCCG-A-GACTTTGATG-CCTCTTGATGCACGAAG--CATTTTTTGACTT---TT--Tc
gi|23 : ACTT--TAACT------ATAGAATAAATTA-AGCTG--CCCG--ACATAACATCAG--T-TATCTTATATTAGATAAACCCCAgatgaccacaaattagtgatggcaatcgattaaatctaaaaaaaaaaaaa
gi|24 : cataaatcaactaaaaatgtaattgacttcgcgggacATA-CGGATTCTT-A-GCCTTCGAAGCCTTG--G--ATACGCAAAGCATATTTAAGTTTAACTA--TCGAT------AA--AGTATC-CGA-TGA-CAGAC-GA-T
gi|25 : AATTT---TT--TCAATA---TAAA--ATTGGC-CGA-TGA-C-AACATA-TGGTGCTCGA--TACG-ATTATTAAAATTG--TGTA-CG----T-CTG-CTCTCTT---TGAAT-TCG-CAAAGT-tgaatcttatacatact
gi|26 : TAAAATAAATTA-AGCTT--CACG--AAATAAT--CAGGTT-TATC-CTTATTAGACAAAC
gi|27 : ttatgtcgatttgtctgatctttttg-TGGGCTCTT-A-GCCTTTGATGTCCTGCTG--GCAGGCAA--CGTACTTAAGTTT---TT--TCAATA---
gi|4 : AATAATGGGCTCTTTG-GCCTTTGATGTCCTG--G--GCACGCAA--CGTACTTAA-TTT---TT--TCAATA---TAAA--ATTGGC-CGA-TGA-C-GACAGA-TGGTGCTCGA--TACA-ATTATCAAATTT---TTTAGCG----T-CTG--TCTCTT---TGAAT-TCG-CAAAGT-GAAA-G--GAA--GACTG-ATC-TG---GACAT--------GC-G--CAGATGCA--CAACA--C--AT---GAAG---GT----CGAA-CCGA-CGTA-----A--TTTT--TAA-CCTA
gi|5 : cccttatatttgggcaaatgaacgctaatggggtcaggagctgataaagggttggcatttcccccaaagggtcacgtgaaaggggggaatataactacatagcatacatgtacctgagagcgatgtggtcgactgaatcgccaaggggggactggtgtggcaacagcgggtggtgtaaatcgaattatcctcaggttcctgcaaagacttgaacactgacactgccgtggcgtctccccacgtggtcctggttcgagctggcaagttggtggacaaaaaacggtaacatcgcccttgatgaagtttttccctatAATA-TGGGCTCTT-A-GCCTTTGATATCCTGCTG--GCACGCAA--CGTACTTAAATTG---TT--TCAATA---TAAA--ATTGGC-CGA-TGA-C-GACAGA-TGGTGCTCGA--TACA-ACTATCAAAATT---TTTA-CG----T-CTG-CTCTCTT---TGAAT-TCG-CAAAGT-GAAA-G--GAA--GACTG-ATC-TG---GACATGCGCAAATGC-G--CAAATGCA--AAACA--C--AT---GAAG---GT----CGAACCCGA-CGTA-----A--TTTTCCTAA-CCTGATTT--TAGCTTATAA-ATAAAATCGGTTA-ATTTG--CGCT--AAATAAC--CAGGTT-TATC-CATAGTGGATAAACCCTAATAt
gi|6 : AATA-TGGGCTCTT-A-GCCTTTGATATCCTGCTG--GCACGCAA--CGT
gi|7 : aaggggactggtgtggcaacagcgggtggtgcaatccgaatatcgagaaaaaacttcattcaagtggcgatgttgacccgtttcagttgccaccaacttgcaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttccctatAAATT---TA-A-CG----TACTG-CCTCCTT---GGAGT-TTG-TAAAGA-GAAA-G--GAA--GA-TG-TTCATT---GACATGT------GC-G--CAGATGCA--CAA-A--CTTCT---AAAG---GC----CGAACCCGA-CGCA-----A--TTTCCC--A-CCTCATCTA-TACCTAATAA-TTGAACTAAATTA---TTA--GGCT--AAATAAC--TAGG-T-TAT--CATAGT-GATAAACCCTAATA
gi|9 : T---TTTA-CG----T-CTG-CTCTCTT---TGAAT-TCG-CAAAGT-GAAA-G--GAA--GACTG-ATC-TG---GACATGC------GC-----AAATGCA--CAACA--C--AT---GAAG---GT----CGAACCCGA-CGTA-----A--TTTTCCTAA-CCTAATTT--TAGCTTATAA-ATAAAATAGGTTA-ATTTG--CGCT--AAATAAC--CAGGTT-TATC-CATAGTGGATAAACCCTAT
5 sequences could not be aligned to this reference sequence:
Unaligned ( gi|3 ): AGTAGGAGTTGCATTAGCCTTGTAACATTTAACTAATGAATGGAAACCAGAGCATTTAAGACAACTGTGCAAATAATTACAATTTGGCTTGTTACAGACACCCTGGTAGTTAAAATCATAGCATTTATTGCGGGGCTGTACTGACTGCTGATGTGGAACATTATCAGGAGTTGATGGTTGCATGTACATCATCCATAACTCTACATCCACTGACGCCCAACTTAGTGAAGTATTGTAAGATTTCTTGAGCCGAAATTGAACATCATAATCTAACCAATTGCCTTTGACCTTCTCCGCTCCCCTTTTATCAAGGTCATATATCTAAACATTGGGATTGCTTGCGTTGGATGTTTGACCAAAAAACAGATGTAAATATTGCAAAAGCATCCAGCCATTGAGACAAATTTGAAATCTTTGTTCCTTCTGGTTGGGTTTGACCTGAAATAAGCCATCCTCAAACACCACCTGATTCTGTTGTGTTGAAGTGTGGGTCATGAAAAAGGAGGCTACCAAAATTGCAAAATTGATTATTGCAAATTTTGTCTCTCAGGCTTTGAGGCAAATGCACCGCTAGCGGTGAAACCACACTCATAAATGGGTTAGGTAAAATATCTAACGGGTCAAATTGAA
Unaligned ( gi|8 ): GCATTTGATACAGAATTGAATGTAAGTCCCATTTGGTGTGTTACAAATACCATGGTGATTGTAAGCGTAACATTTAGAGTGTTCACCTGATGATTTGTCAAATTTGGGAGAAATTGAATATAAATGATCCACAACTCCGCATCAACTGAAGCCCAAGACAATGAAATGTCGTAGGATTTT
Unaligned ( gi|18 ): ATCAGATGCAAAAGTGAACCAAAATCAACATACAGATCATTCATGATTGTTTCCCTTATATCTTGGGGCAAATGAACCGCTAATAGGGTCACGGAGCTGATAAAGGGTTAGGTATTTCCCCCAAA
Unaligned ( gi|28 ): TAACTACATACATACATGTACCTGACGAGCCATGTGTCGACTGAATCGCCAAG
Unaligned ( gi|29 ): ACCAAAATCAACATACTGATCATTGATGATTCTTTCC