lowQualScore : 4 4 1 8888 4 4 55 4 4 44 4 7777777777777 4 1 2 1 222222 1 1 22222222 111 1 333 11 11 1 1111 111 1 8888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 1 444444 1 1 3333333333333333 11 2222222 111 11 11 1111 11111111111 111 11 11 1 777777777777777777777777777777777777777777777 111111 1111111 1111 111111 2222222222 11111 1111 1 111111 11111 3333 1111111 6666666666 1111 22222 111111 33333333333 444444444444444444444444 222
lowQualScore : 0 0 5 5555 0 0 6 55 6 0 0 66 0 6666666666666 0 0 0 2 0 333333 0 7 5 0 9 3 77777777 111 0 111 33 22 3 6 0 3333 777 0 5555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 7 3 000000 0 3 3 5555555555555555 4 11 3 0 5555555 6 222 444 8 8 0 3 8 11 9 9 33 1 4 88888 99 4444 44444444444 1 5 0 1 000 00 5 0 55 3 77 5 77 5 77 3 5 5 6 222222222222222222222222222222222222222222222 6 6 6 666666 77 77 4444444 5 5 77 5 3 5 5 5 2222 666666 3333333333 44444 5 7777 77 0 555555 0 5 11111 8888 66 4 1 7777 4 1111111 77 99 6 6 6 1111111111 2222 5 5 5 5 22222 666666 5 11 8 22222222222 777 4 4 4 4 1 4 44 8 4 4 000000000000000000000000 4 55 4 3 888
lowQualScore : . . . .... . . . .. . . . .. . ............. . . . . . ...... . . . . . . ........ ... . ... .. .. . . . .... ... . ................................................................................................................................................................... . . ...... . . . ................ . .. . . ....... . ... ... . . . . . .. . . .. . . ..... .. .... ........... . . . . ... .. . . .. . .. . .. . .. . . . . ............................................. . . . ...... .. .. ....... . . .. . . . . . .... ...... .......... ..... . .... .. . ...... . . ..... .... .. . . .... . ....... .. .. . . . .......... .... . . . . ..... ...... . .. . ........... ... . . . . . . .. . . . ........................ . .. . . ...
lowQualScore : 0 0 0 0000 0 0 0 00 0 0 0 00 0 0000000000000 0 0 0 5 0 888888 0 0 2 8 8 2 22222222 000 0 222 88 55 2 0 0 8888 555 0 7777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 3 3 000000 7 3 3 2222222222222222 0 00 8 8 4444444 6 666 000 0 0 8 2 0 44 2 0 22 8 6 33333 22 2222 77777777777 7 7 6 7 000 77 7 3 66 6 99 7 99 7 99 3 0 7 7 555555555555555555555555555555555555555555555 7 7 7 444444 99 99 0000000 7 7 99 7 9 7 7 7 1111 444444 1111111111 33333 7 3333 99 0 555555 1 0 11111 6666 11 4 1 0000 4 0000000 99 22 7 7 7 4444444444 1111 7 7 7 7 11111 444444 3 11 4 00000000000 000 0 0 0 0 3 0 33 0 0 0 777777777777777777777777 0 55 4 1 888
consensus : AAAGGAGTTTAATAGCCCCAA-TTTAAAACAAAAA----GTGGGAAA-CTTATATAGATAA--CCTTATCTGACAAAGACTGGAAATTTTATTTT-TAAATGTTTTCGTTATGTACGAAGGATACAAAAATAA-TTTATTATTCAAATACGCGAAATATCTGATGAACTAT-ATTGCCTACCAACTCCTT-TC-TT-CATAAAA-TTAAACTTTCAGATAATAA----TT--TGTG-T-ACTTT-GTT--AAATG--TGAAGC-AGAAACAA-TA-AC-TCG---CATA-TTT----CAT--GATT--GTG-TG--------CAA-ATCAA----NTTA---TTTTGG----ATGA---TTTT----G---T--GCAG-T-GG--TTTACA-----TG-C-AA-T--TGAAA---A-TNATTA---T-------AAG-ATA--T-CGAAAA-A-T-GTTTTACTTGGT-AACG-C-A--GAAGGAA-GCT-GTTT---AGGAAANTTT--CTTTTNTTG--GTTGCAAAAAG----TTATATATTTTATT---CTA-GA-TCACAAGGCCTTAGGC-CAAAATTTTCAGAGGCAGTGAA-TTTGTTTAAG-TNT-TAT--AGAAATAT-G--AAAA----TT-AC-TGTGAAA-AGGTATTCA---AAT-GTA-AATCC-AAAATGCTTA--GC-A--AA-T--GGGCAA-TATATGAT-AT-T---------GTGTA------------TA-A--CAA----------GTGA-TGG-AAAACCA-TGT------A--TA--TA----GA-GC-TACA-TC--AA-CTA-C-ATGT-A----CATG------TTA----A-----TAC-----T-TT-G--AAT--CAG-TATCA-A-TA-TCTTTTTTTT-CCCAC-----TACAT-TAT--ATG-TTTACTG--T-GTA-TCATAAG---G---TATAT--TGG--CTGTCGTG-T-GC-TATATTATTTACA--T-ACAG-TAC----TACTT-TGA-TTGA-TTA-TAT-----GAATG------TGTGTGGTTGTGTGTG------AT-T-TTAG---TGT-AATG-TC-ATA-TGCG-TAT-A-TT-A-T--G--------T-----T------ATA-T--AAATGT-CTGAAAATAAAACATTAT--AAAAA
Reference ( gi|2 ) : AAAGGAGTTTA-TAGCCCCAACTTTAAAAAAAAAAATAAGTGGGAAAACTTAT-TAGATGAATCCTTATCTGACAAAGACTGGGAA-TTTATTTTGTAAATG-CTTCGTTATGTACGAAGGATACAAAAATAATTTTATT-TTC-AATAC-C-AAATA-CTGATGAACTAT-ATTG-TTACCAACTCCTT-TC-TT-CATAAAA-TTAAAATTTCAGATAATAA----TT--TGTG-T-ACTTT-GT---AAATG--TGAAGC-AGAAACGA-TA-AC-TCA---CATA-TTT----TAC--GATT--GTG-TG--------CAA-GTCAA----CTTA---TTTTGG----ATGA---TTTT----G---T--GCAG-T-GG--TTTA-A-----TG-C-AA-T--TGAAA---A-TGATTA---T-------AAG-ATA--T-CAAAAAAAAT-GTTTTACTTGGT-AACA-C-A--GAAGGGA-GCT-GTTT---AGAAAAATGT--CTTTTATTG--GTTGCAAAAAG----TTATTTATTTTATT---CTA-GA-TCACAAGGCCTTAGGC-CAAAATTTTCAGAGGCATTGAA-TTTATTCAAG-TTT-TAT--AGAAATATGG--AAAA----TT-GC-TGTGAAA-AGGTATTCA---AAT-GTA-AATCC-GAAATGCTTA--GC-A--AA-T--GGGCAA-TATATGAT-AT-T---------GTTTA------------TA-A--CAA----------GTGA-TGG-AAAACCA-TGT------A--TA--TA----GA-GC-TACA-TC--AA-CTA-C-ATGT-A----CATG------TTA----A-----TAC-----T-TT-G--AAT--CAG-TATCA-A-TA-TCTTTTTTTT-CCCAC-----TACATGTAT--ATG-TTTACTG--T-GTA-TCATAAG---G---TATAT--TGG--CTGTCGTG-T-GC-TATATTATTTACATGT-ACAG-TAC----TACTT-TGA-TTGA-TTA-TAT-----GAATG------TGTGTGGTTGTGTGTG------AT-T-TTAG---TGT-AATG-TC-ATA-TGTG-TAT-A-TT-A-T--G--------T-----T------ATA-T--AAATGT-CTAAAAATAAAACATTA---AAAAA
gi|1 : AAAGGAGTTTAATAGCCCCAA-TTTAAAACAAAAA----GTGGGAAA-CTTATATAGATAA--CCTTATCTGACAAAGACTGGAAATTTTATTTT-TAAATGTTTTCGTTATGTACGAAGGATACAAAAATAA-TTTATTATTCAAATACGCGAAATATCTGATGAACTATAATTG-CTACCAACTCCTTATCATT---TAAAA-TCAAACTTTCTGATAG-AAGATTTT--TGTGTT-ACTTT-GTTACACATC--CTGAGC-AGAAACAATTA-AC-TTGTACCATA-CTTCTCACAT--GATTTGATG-TGGGATAGGTCCA-ATCAAGAGTGTTA----TTTGGAGATATGA---CTTTATAGG---T--G-AGCT-GGAATTTA-A-----TGAT-AA-TTCTGAAAAACA-TGATTAGATT-------AAATACA--T-CAAAAA
gi|4 : gaAACTAT-ATTGCTTACCAACTTCTT-TC-TT-C-TAAAA-T--AAATTCTAGATAATAA----TT--TGTG-T-ACTTTTGT---AAATG--TGAAGCCAGAAACAA-TA-AAATCA---CATA-TTT----TAT--GTTT--GTGCTG--------CAA-ATCAA----TTTA---TTTTGA----ATGA---TTTT----G---TTTGCAG-T-GG--TTTATA-----GG-C-AAAT--TGAAA---A-TTATTA---T-------AAG-----------------T-GTTTAATT--GT-ACCA-CCA--GAAGGAA-GCT-GTTT---AGGAAATTTT--TCTTTATTG--G-TGCAAAAAGT---TTATTTA-TTTATT---CTA-GATTCACAA-GCCTTA-GC-CAAAA-TTTCAGAGGCAGTGAATTTTATCAAAG-TTT-TAT--AGAAATAT-G--AAAA----TTAACGTGTGAAA-AGGCATTAATTTAAT-GTATAATCCAAAAATGCTTA--GC-A--AAGTGGGGGCAA-TAAATGATCATAT---------GTATA------------TACA--C-A----------GTGA-TGGAAAAACCA-TGG------A--TA--TATTAGAA-GC-TACA-TTCAAA-CTA-C-ATGT-A----CATG------TTA----A-----TAC-----T-TT-GGAAAT--CAGCTATCA-A-TATTCTTTTTTTT-TTCAA------ACATATAT--ATGATTTACCG--TCGTATTCATAAGCGTA---TATAT--TGG--CTGTCGTGTT-GC-TATATTATTTACAT------G-TAC----TACTT-TAA-TTGATTTATTAT-----GAAAG------TG---------GTGTG------AT-TGTTAG---TGT-AATG-TC-ATA-TGGA-TAC-ATTT-A-T--A--------TG----T------ATACT--AAATGTACT-CAAATAAAACATTAT--AAAAAgcaattaataacttgtgttggtgtatatacttttgttgtaatcagacagaagaaaatacgttgggtatctaaagaattgtttcttattactatgtgaatgcaaaatacagtcttcatctattaaacttagcatcagttaaatagatccaacaaaaggtcctatagtcacaaaaaattttagatcagctaggatgacaagtcttgtatcctatcataactcttgtcataagacacataccttgtccgaaacgatattataacttgtcaaagaggtatttaaattgtaaactccaaatgcttagcaatggtcaatatatgcactaggtttagatatatggacctaacaaacactcgaaagtgggaaaaccatgttgtgctagttacttagagctacatgaagctagcatgttacattaacacattggtttagaattacagatattaaatatctttttttcccactaatatacatgtattgtttactggatgtaaattgcaaaaaatacaggagtgtatgaaaagaataatgaactgccgattgtgctaattagaaaaaagtaagataattttatttttgagcagatactacttgtgaattgattgtatttctagaattagtgctgttcgtgatctttcgtgtggatgcttgtaagatagattaatgttgccataatataattagattcatgaagtatataaacataacaaca
gi|5 : TAC-ATTGCTTAT-AACTCGTT-TCCTT-CACAAAACTTAAACTTGTAGAAAATGA----CAAATGTT-T-CTCTT-GT---AAATGAGTGAAG--AGAAACAA-TT-TC-TCA---TATA-TTT-----AT--GATA--TTG-T----------AATATCAC----CCTAGCCTTTTGG----G-GAGATTTTT----G---T--GAAA-TTGG-----A-ACCAGTTG-CTGA-T--TGAAA---AAGGATTA---T-------AAG-ATT--TTCGAAAAGAATTGTATTACTTGGA-AATG-T-T--AATGGAA-GCTTGTT----------ATAT--TTTTTCTTTCTATAGCAAAAAA----GCATATATATTATG---CCAAGA-TC-CAAGG--TTTGAC-CAAA-TTTTTAT-GCCATTAAA-TTTGTTTAAA-CATATAT--AGAAATATTGAAAAAA----TT-GT-----AAA-TGCTTTCCA---AA--G-A-AATCC-AAAACTCCTA--GT-A--AA-T--G
gi|3 : AT-ATTG-CTACCAACTCCTT-TC-TTTCATAAAA-TTAAA-TTTC-GATAATAA----TT--TGTG-TGACTTT-TTTT-AAATG--TGAAGC-AGAA-CAA-TACAC-TCA---CATAATTT----CATTTAGTT--GTG-TG--------CAA-GTCAA-----TTA---TTGTGA----ATGA---TTTT----AGTCT--GCAG-T-GG--TTTACA-----TG-C-AA-T--TGAAA---G-TC-TTG---TTCTTGAGAAG-ATAATC-CAAAAATATT-GTTTTACTTGGTTAACATC-ATTGAAGGGAAGCT-GTTTTTAAAAAAAATTTAGCTTTATTTG--GTTGCAAAAAG----TT-TATATTTTATTATTCTA-GA-TCACAAGGCCTTAGGCACAAAATTTTCAGCAGCAGTGAA-TTACTTCAAGCTTT-TAT--AG-AATATGG--AAAA----TT-AC-TGGG--A-AGGTATTAA---AAT-GTA-AAT-C-AAAATGCTTA--GCAA--AA-T--GTGGAA-TATATGAT-AT-T---------G--TA-------------A-A--CAA----------GTGA-T-G-AAAACCATTGT------A--TA--TA----GA-ACTTACATTC--AA-ACA-CAATGT-A----CATG------TTA----A-----TAC-----TGTT-GA-AAT--CAG-TATCATA-T--TCTTTTTTTTCCCCAC-----TAGA---AT--GT--TTTACTG----GTT-TCATAAG---GGTATATAT--TAGGCCTGTCGTG-T-GCATATATTAATTAT---C-ACAA-TAC----TACTT-TGA-TGAG-TTA-TATTG---GAATGGTGAAATGTATTGTTGTGTATG-----------TTAGAAATGT-AATG-TCAATA-TATGTTACAA-TT-A-T--G--------T-----T------TTA-TTAAAATGT-CTAAAAAAAAAACATTacactattatacttaacgttttgatatttagtttgtagaaaacctatttaac
gi|15 : cGGAAATTTT--CTTTTATTG--GTTGCAAAAAAAAGTTTATTTATT--ATT---CTT-GA-TCACAAGGCCTTAGGC-CAAAATTTTCAtattgaaaa
gi|9 : --CTTCTGTTA--GCTTCGAA--G----TT-TATATGTTATT---CCA-GA-TCACAAGGCCCTAAGT-CATT-TTTTCTGAGGCAGTGA--TTTATCTAAG-TGA-CAC--AGAAATATGG--AAAA----AT-AC-TTTGTAA-ATGTGTTCC---ATT-CTA-AAGCC-CAAATATGTATGGC-AAGAA-T----GCAA-TTTACG-T-AT-TTTTATGTACGTGTA------------TA-A--AAAT---------GTGA-TGA-AAAACCA-
gi|10 : tggaggcttgttaaTGTTTAAA-CAT-TAT--AGAAATATTG--AAAAATATTT-G--TGTGAAA-TGCTTTCCA---AA--GTA-AATC---AAACTC-TA--GT-A--AA-T--GGACAGCTATATGAT-A
gi|6 : -TTT-TATCTAGAA-TA-----AAAG----TT-AC-CATGAAA-AGGTATTTA---AAT-GTA-AAACC-AAAATGCTTA--GC-A--AA-T--GGGCAAATATATGAT-AT-T---------GTATA------------TA-AAACAA----------GTGAATGG-AAAACGA-TGT------A--TA--TA----GATGC-TACA-TC--AA-CAA-C-ATGT-A----CATG------TTAT---A-----AAC-----T-TTTG--AAT--CAG-TATCA-A-TA-TCTTTTTTT---CCAC-----TA----TAT--ATG-TTTACTG--T-GTA-TCATAAG---G---TATAT--TGG--CTGTCGTG-TTGC-TATATTATTTACA-------G-TAC----TACTT-TGA-TTGA-TTA-TAT-----GAATG------TGTGTGGTTGTGTGTG------AT-TGTTAG---TGT-AATG-TC-ATA-TGCG-TAT-ATTT-A-T-----------T-----T------ATA-T--AAATGT-CTGAAAATAAAACATTAT--AAAAAaaaaaaaaaaaaagaaatatatgttttttgatatttagtttgttgacaaactattttaacattcttaaggataaacatttattttttttttcttagagtatgtctttcttattattt
gi|1 : ttt-TGTCAAAGAGGTATTTA---AATTGTA-AACTC-CAAATGCTTA--GC-A--A--T--GGTCAA-TATATG-C-AC-TAG-------GTTTAGATATATGGACCTA-A--CAAACACTCGAAAGTG---GG-AAAACCA-TGTTGTGCTAGTTACTTA----GA-GC-TACA-TG--AAGCTAGC-ATGTTA----CAT--------TA----A-----CACATTGGT-TTAG--AATTACAGATATTA-AATA-TC-TTTTTTT-CCCACTAATATACATGTAT---TG-TTTACTGGAT-GTA-a
gi|13 : gaaaaggagtttaatagccccaatttaaaacaaaaagtgggaaacttatatagataaccttatctgacaaagactggaaattttatttttaaatgttttcgttatgtacgaaggatacaaaaataatttattattcaaatacgcgaaatatctgatgaactataattgctaccaactccttatcatttaaaatcaaactttctgatagaagatttttgtgttactttgttacacatcctgagcagaaacaattaacttgtaccatacttctcacatgatttgatgtgggataggtccaatcaagagtgttatttggagatatgactttataggtgagctggaatttaatgataattctgaaaaacatgattagattaaatacatcaaaaagcaattaataacttgtgttggtgtatatacttttgttgtaatcagacagaagaaaatacgttgggtatctaaagaattgtttcttattactatgtgaatgcaaaatacagtcttcatctattaaacttagcatcagttaaatagatccaacaaaaggtcctatagtcacaaaaaattttagatcagctaggatgacaagtcttgtatcctatcataactcttgtcataagacacataccttgtccgaaacgatattataactTATGAT-AT-T---------GTGTA------------CA-A--CAA----------GTGA-TGA-AAAACCA-TGT------A--TA--TA----AA-GC-TATA-TC--AA-C-A-C-ATGT-ACATGCATG------TTAATTTA-----TGC-----T-TT-A--AAT--CAG-TATCA----A-TTTTTTCTCT-CTCAC-----TA----TAT--ATG---TA-TG--T-ATA-TTATAAG---aattgcaaaaaatacaggagtgtatgaaaagaataatgaactgccgattgtgctaattagaaaaaagtaagataattttatttttgagcagatactacttgtgaattgattgtatttctagaattagtgctgttcgtgatctttcgtgtggatgcttgtaagatagattaatgttgccataatataattagattcatgaagtatataaacataacaaca
gi|8 : GT------A--TA--TA----GA-GC-TACA-TC--AA-CTA-C-ATGT-A----CATG------TTA----A-----TAC-----T-TT-G--AAT--CAG-TATCA-A-T----TTTTTTTT-TCCAC-----TA----TAT--ATG-TTTAGTG--T-GTA-TCATAAG---G---TATAT--TGG--CTGTCGTG-T-GC-TATATTATT------T-ACAG-TAC----TA----TGA-TTGA-TTA-TAT-----GAATG------TGTGTGATTG-----------------TTAG---TGT-AATG-TC-ATA-TGTG-TAT-A-TT-A-T--GTTTTAAAAT-----T------ATA-T--AAATGT-CTAAAAATAAAACATTAT--AAAAA
gi|7 : ------A--TA--TA----------TACA-TC--AA-CTA-C-ATGT-A----CATACATGTTTTA----AATTTATAC-----T-TT-G--AAT--CAG-TATCA-A-T------TTCGTT-CTCAC-----TA----TAT--ATG-TTT---G--T-ATA-TTATAAG---G---CATAT--TAA--CTGTCCCG-T-GC-TATATTATTTACA-GTCATAA-TAAATTGTACTT-TGA-TTGA-TTA-TAT-----GAATG------TGTATGATTGTGTGTGTATGTAAT-TGTTAG---TGT-AATG-TC-ATA-TGTG-TAT-A-TC-A-T--G--------TGTA--T------ATA-T--AAATGT-CTGAAAATAAAGCATTA---AA
gi|11 : cG-TATCA-A-TA-TCTTTTTTTT-CCCAC-----TATATACATGTATG-TTTACTG--T-GTA-TCATAAG---G---TATATATTGG--CTGTCGTG-T-GC-TATATTATTTACA-------G-TAC----TACTT-TGA-TTGA-TTA-TAT-----GAATG------CGTGTGATTG-----------------TTAG---TGT-AATG-TC-ATA-TGTG-TAC-A-TT-A-T--GT-------T-----T------ATA-T--AAATGT-CTAAAAATAAAACA-TA---AAAAA
gi|17 : AC-----TACAT------ATG-TTTACTG--T-GTA-TTATAAG---G---TATAT--TG
gi|1 : ttttaCAGATAC----TACTTGTGAATTGA-TTG-TATTTCTAGAATT------AGT---GCTGTTCGTG------ATCT-TTCG---TGTGGATGCTT-GTA-AG-A-TAG-A-TTAA-T--G--------T-----TGCCATAATA-T--AA
gi|14 : gaaaaggagtttaatagccccaatttaaaacaaaaagtgggaaacttatatagataaccttatctgacaaagactggaaattttatttttaaatgttttcgttatgtacgaaggatacaaaaataatttattattcaaatacgcgaaatatctgatgaactataattgctaccaactccttatcatttaaaatcaaactttctgatagaagatttttgtgttactttgttacacatcctgagcagaaacaattaacttgtaccatacttctcacatgatttgatgtgggataggtccaatcaagagtgttatttggagatatgactttataggtgagctggaatttaatgataattctgaaaaacatgattagattaaatacatcaaaaagcaattaataacttgtgttggtgtatatacttttgttgtaatcagacagaagaaaatacgttgggtatctaaagaattgtttcttattactatgtgaatgcaaaatacagtcttcatctattaaacttagcatcagttaaatagatccaacaaaaggtcctatagtcacaaaaaattttagatcagctaggatgacaagtcttgtatcctatcataactcttgtcataagacacataccttgtccgaaacgatattataacttgtcaaagaggtatttaaattgtaaactccaaatgcttagcaatggtcaatatatgcactaggtttagatatatggacctaacaaacactcgaaagtgggaaaaccatgttgtgctagttacttagagctacatgaagctagcatgttacattaacacattggtttagaattacagatattaaatatctttttttcccactaatatacatgtattgtttactggatgtaaattgcaaaaaatacaggagtgtatgaaaagaataatgaactgccgattgtgctaattagaaaaaagtaagataattttatttttgagGTGTG------AC-T-GTAG---TGT-AATG-TC-ATACTGCG-TAG-A-TT-AAT--G--------T-----TT-----ATA-T--AAATGT-CTAAAAAAAAAAC-TTAT--AAAAAttagattcatgaagtatataaacataacaaca
gi|16 : gtg------AT-T-TGTG---TGT-GATA-TC-ATG-TGTG-TAT-A-TT---T--A--------T-----T------GTA-T--AA-TGT-CTGAAAATAAAGCATTA---AAAAt
gi|12 : TGG---TGT-AATG-TC-ATA-TGTG-TAT-A-TT-A-TGGG--------TATATAT------ATA-T--ATATGT-CTGAAAATAAAGCATTATTTAAAAA
Alignments
lowQualScore : 1 2 4444 2 1 22 1 2 1 2 1 1 222 1 11 1 111 11111111 111 222 1111 22222 11 11 22222222 22222 1111 1111 111 22222222222 111 222222 11 11111 4444444444444444444444444444444444444 1 2222222 1 1 2222 111 2 11 111 2 111111 1 222222222222 222222222 3333333333 111111 11111 1111 111111 1111111111 11111 1111 11 11111 333333 111111 22222222 1111 111111 2222222222 33333333333333333
lowQualScore : 5 0 2 2222 0 5 77 5 0 5 0 5 5 000 5 8 99 8 6 333 8 3 8 99 0 88888888 8 8 444 555 0 8 0 8 8 8 6666 8 33333 11 11 8 99999999 8 55555 4444 7777 0 444 66666666666 5 8 8 111 666666 999 8 11 66666 11 8888888888888888888888888888888888888 3 0 7777777 0 0 0000 1 1 99 1 1 111 3 00 111 6 6 1 6 3 5 0 8 2 0 5 1 5 77 5 0 2 444444 0 5 0 888 88 5 777 5 5 5 5 66 5 66 1 555555555555 5 222222222 00 5 77 5 0000000000 5 5 5 444444 66 66 00000 5 5 5 66 5 2 5 5 5 0000 444444 9999999999 22222 5 3333 66 8 4 00 4 00000 999999 4 55 4 4 777 888 66 66 5 5 5 444444 5 77777777 0000 5 5 66 444444 0 0 3 7777777777 777 4 4 3 4 4 8 4 00000000000000000 8 4 55 4 3 0 999
lowQualScore : . . . .... . . .. . . . . . . ... . . .. . . ... . . . .. . ........ . . ... ... . . . . . . .... . ..... .. .. . ........ . ..... .... .... . ... ........... . . . ... ...... ... . .. ..... .. ..................................... . . ....... . . .... . . .. . . ... . .. ... . . . . . . . . . . . . . .. . . . ...... . . . ... .. . ... . . . . .. . .. . ............ . ......... .. . .. . .......... . . . ...... .. .. ..... . . . .. . . . . . .... ...... .......... ..... . .... .. . . .. . ..... ...... . .. . . ... ... .. .. . . . ...... . ........ .... . . .. ...... . . . .......... ... . . . . . . . ................. . . .. . . . ...
lowQualScore : 5 0 5 5555 0 5 55 5 0 5 0 5 5 000 5 0 66 0 0 666 0 8 2 22 8 22222222 0 0 444 000 8 0 8 0 0 0 8888 0 44444 00 00 0 00000000 0 88888 8888 0000 8 000 22222222222 0 0 0 888 222222 222 0 00 00000 88 9999999999999999999999999999999999999 2 0 2222222 0 0 8888 4 0 22 0 7 777 7 33 777 7 7 0 7 5 6 8 0 2 3 7 0 7 99 0 0 6 999999 4 0 2 888 22 0 555 0 0 0 0 99 0 99 4 666666666666 7 999999999 66 7 99 7 7777777777 7 7 7 444444 99 99 99999 0 0 0 99 0 2 0 0 0 6666 444444 1111111111 55555 0 9999 99 9 4 88 4 00000 222222 0 55 0 0 888 888 99 99 0 0 0 444444 0 55555555 6666 0 0 99 444444 4 1 1 0000000000 000 0 0 7 0 0 0 0 22222222222222222 0 0 55 0 0 8 444
consensus : AAAGGAGTTTAATAGCCCCAACTTTAAAANAAAAAATAAGTGGGAAAACTTATATAGATGAATCCTTATCTGACAAAGACTGGGAATTTTATTTTGTAAATGCTTTCGTTATGTACGAAGGATACAAAAATAATTTTATTATTCAAATACGCGAAATATCTGATGAACTAT-ATTGCTTACCAACTCCTT-TC-TT-CATAAAA-TTAAACTTTCAGATAATAA----TT--TGTG-T-ACTTTGTT-AAATG---TGAAGC-AGAAACAA-TA-AC-TCA---CATA-TTT----CAT--GATT--GTG-TG--------CAA-ATCAA----CTTA---TTTTGG----ATGA---TTTT----G---T--GCAG-T-GG--TTTA--CA--TG-C-AA-T--TGAAA---A-TGATTA---T-------AAG-ATA-T-C--GAAAAA---T---GTTTTACTTGGT-AACG-C-A--GAAGG-AAGCT-GTTT---AGGAAATTTT--CTTTTNTTGGTTGCAAAAA---GTT-TATAT-NTTAT---TCTA-GA-TCACAAGGCCTTAGGC-CAAAATTTTCAGAGGCAGTGAA-TTTATTTAAG-TTT-TAT--AGAAATA-TGGAAAANT-AC---TGTGAAA-AGGTATTCA---AAT-GTA-AA-TCC-AAA-ATGCT-TAGC-A--AA-T--GGGCAA-TATATG------------ATAT-T---------GTGTATA-A--CA-A----------GTGA-TGG-AAAACCA-TGT------A--TA--TA----GA-GC-TACA-TC--AA-CTA-C-ATGT-A----CATG------TTA----A-----TAC-----T-TT-G--AAT--CAG-TATCAA-TA-TCTTTTTTTT-CCCAC-----TACAT---TATATG-TTTACTG--T-GTA-TCATAAG---G---TATAT--TGG--CTGTCGTG-T-GC-TA------TATT-ATTTACA--TACAGTAC----TACTTTGATTGA-TTA-TAT--GAATG------TGTGTGGTTGTGTGTG------ATT-TTAG---TGTAATGTC-ATA-TGTG-TAT-A-TTA-T--G--------T-----T-ATA-T--AAATGT-CTGAAAATAAAACATTA--TAAAAA
Reference ( family-829 ) : AAAGGAGTTTAATAGCCCCAA-TTTAAAACAAAAA----GTGGGAAA-CTTATATAGATAA--CCTTATCTGACAAAGACTGGAAATTTTATTTT-TAAATGTTTTCGTTATGTACGAAGGATACAAAAATAATTT-ATTATTCAAATACGCGAAATATCTGATGAACTAT-ATTGCCTACCAACTCCTT-TC-TT-CATAAAA-TTAAACTTTCAGATAATAA----TT--TGTG-T-ACTTTGTT-AAATG---TGAAGC-AGAAACAA-TA-AC-TCG---CATA-TTT----CAT--GATT--GTG-TG--------CAA-ATCAA----NTTA---TTTTGG----ATGA---TTTT----G---T--GCAG-T-GG--TTTA--CA--TG-C-AA-T--TGAAA---A-TNATTA---T-------AAG-ATA-T-C--GAAAAA---T---GTTTTACTTGGT-AACG-C-A--GAAGG-AAGCT-GTTT---AGGAAANTTT--CTTTTNTTGGTTGCAAAAA---GTTATATAT-TTTAT---TCTA-GA-TCACAAGGCCTTAGGC-CAAAATTTTCAGAGGCAGTGAA-TTTGTTTAAG-TNT-TAT--AGAAATA-T-GAAAATT-AC---TGTGAAA-AGGTATTCA---AAT-GTA-AA-TCC-AAA-ATGCT-TAGC-A--AA-T--GGGCAA-TATATG------------ATAT-T---------GTGTATA-A--CA-A----------GTGA-TGG-AAAACCA-TGT------A--TA--TA----GA-GC-TACA-TC--AA-CTA-C-ATGT-A----CATG------TTA----A-----TAC-----T-TT-G--AAT--CAG-TATCAA-TA-TCTTTTTTTT-CCCAC-----TACAT---TATATG-TTTACTG--T-GTA-TCATAAG---G---TATAT--TGG--CTGTCGTG-T-GC-TA------TATT-ATTTACA--TACAGTAC----TACTTTGATTGA-TTA-TAT--GAATG------TGTGTGGTTGTGTGTG------ATT-TTAG---TGTAATGTC-ATA-TGCG-TAT-A-TTA-T--G--------T-----T-ATA-T--AAATGT-CTGAAAATAAAACATTA--TAAAAA
gi|1 : AAAGGAGTTTAATAGCCCCAA-TTTAAAACAAAAA----GTGGGAAA-CTTATATAGATAA--CCTTATCTGACAAAGACTGGAAATTTTATTTT-TAAATGTTTTCGTTATGTACGAAGGATACAAAAATAATTT-ATTATTCAAATACGCGAAATATCTGATGAACTATAATTG-CTACCAACTCCTTATCATT---TAAAA-TCAAACTTTCTGATAG-AAGATTTT--TGTGTT-ACTTTGTT-ACACATCCTG-AGC-AGAAACAATTA-AC-TTGTACCATA-CTTCTCACAT--GATTTGATG-TGGGATAGGTCCA-ATCAAGAGTGTTA----TTTGGAGATATGA---CTTTATAGG---T--G-AGCT-GGAATTTA---A--TGAT-AA-TTCTGAAAAACA-TGATTAGATT-------AAATACA-T-C--AAAAA
gi|1 : gaATA-T-TATAACT------TGTCAAAGAGGTATTTA---AATTGTA-AA-CTC-CAA-ATGCT-TAGC-A--A--T--GGTCAA-TATATGCACTAGGTTTAGATATAT---------GGACCTA-A--CA-AACACTCGAAAGTG---GG-AAAACCA-TGTTGTGCTAGTTACTTA----GA-GC-TACA-TG--AAGCTAGC-ATGTTA----CAT--------TA----A-----CACATTGGT-TTAG--AATTACAGATATTAAATA-TC-TTTTTTT-CCCACTAATATACATG--TAT-TG-TTTACTGGAT-GTA-gcaattaataacttgtgttggtgtatatacttttgttgtaatcagacagaagaaaatacgttgggtatctaaagaattgtttcttattactatgtgaatgcaaaatacagtcttcatctattaaacttagcatcagttaaatagatccaacaaaaggtcctatagtcacaaaaaattttagatcagctaggatgacaagtcttgtatcctatcataactcttgtcataagacacataccttgtccgaaacgatattataacttgtcaaagaggtatttaaattgtaaactccaaatgcttagcaatggtcaatatatgcactaggtttagatatatggacctaacaaacactcgaaagtgggaaaaccatgttgtgctagttacttagagctacatgaagctagcatgttacattaacacattggtttagaattacagatattaaatatctttttttcccactaatatacatgtattgtttactggatgtaaattgcaaaaaatacaggagtgtatgaaaagaataatgaactgccgattgtgctaattagaaaaaagtaagataattttatttttgagcagatactacttgtgaattgattgtatttctagaattagtgctgttcgtgatctttcgtgtggatgcttgtaagatagattaatgttgccataatataattagattcatgaagtatataaacataacaaca
gi|10 : gaaaaggagtttaatagccccaatttaaaacaaaaagtgggaaacttatatagataaccttatctgacaaagactggaaattttatttttaaatgttttcgttatgtacgaaggatacaaaaataatttattattcaaatacgcgaaatatctgatgaactataattgctaccaactccttatcatttaaaatcaaactttctgatagaagatttttgtgttactttgttacacatcctgagcagaaacaattaacttgtaccatacttctcacatgatttgatgtgggataggtccaatcaagagtgttatttggagatatgactttataggtgagctggaatttaatgataattctgaaaaacatgattagattaaatacatcaaaaagcaattaataacttgtgttggtgtatatacttttgttgtaatcagacagaagaaaatacgttgggtatctaaagaattgtttcttattactatgtgaatgcaaaatacagtcttcatctattaaacttagcatcagttaaatagatccaacaaaaggtcctatagtcacaaaaaattttagatcagctaggatgacaagtcttgtatcctatcataactcttgtcataagacacataccttgtccgaaacgTGTTTAAA-CAT-TAT--AGAAATATT-GAAAAAT-ATTTGTGTGAAA-TGCTTTCCA---AA--GTA-AA-T-C-AAA----CTCTAGT-A--AA-T--GGACAGCTATATG------------ATAaattgcaaaaaatacaggagtgtatgaaaagaataatgaactgccgattgtgctaattagaaaaaagtaagataattttatttttgagcagatactacttgtgaattgattgtatttctagaattagtgctgttcgtgatctttcgtgtggatgcttgtaagatagattaatgttgccataatataattagattcatgaagtatataaacataacaaca
gi|11 : G-TATCAA-TA-TCTTTTTTTT-CCCAC-----TATATACATGTATG-TTTACTG--T-GTA-TCATAAG---G---TATATATTGG--CTGTCGTG-T-GC-TA------TATT-ATTTACA------GTAC----TACTTTGATTGA-TTA-TAT--GAATG------CGTGTGATTGT----------------TAG---TGTAATGTC-ATA-TGTG-TAC-A-TTA-T--G--------T-----TTATA-T--AAATGT-CTAAAAATAAAAC---A--TAAAAAaaaaaaaaaaaaagaaatatatgttttttgatatttagtttgttgacaaactattttaacattcttaaggataaacatttattttttttttcttagagtatgtctttcttattattt
gi|12 : GG--CTGTCATG-T-GT-CAGGTGCTTGTTTAGTTACA--TGCA--------TGCTTC--TTAA-T-A-CAT--AAGAG------GGAGGGG----GAGGG------AT----GG---TGTAATGTC-ATA-TGTG-TAT-A-TTA-TGGG--------TATATAT-ATA-T--ATATGT-CTGAAAATAAAGCATTATTTAAAAAa
gi|13 : TATG------------ATAT-T---------GTGTACA-A--CA-A----------GTGA-TGA-AAAACCA-TGT------A--TA--TA----AA-GC-TATA-TC--AA-C-A-C-ATGT-ACATGCATG------TTAATTTA-----TGC-----T-TT-A--AAT--CAG-TATCA---A-TTTTTTCTCT-CTCAC-----TA------TATATG---TA-TG--T-ATA-TTATAAG---a
gi|14 : GTGTG------ACT-GTAG---TGTAATGTC-ATACTGCG-TAG-A-TTAAT--G--------T-----TTATA-T--AAATGT-CTAAAAAAAAAAC-TTA--TAAAAA
gi|15 : gtgGGAAATTTT--CTTTTATTGGTTGCAAAAAAAAGTT-TATTT-ATTAT---TCTT-GA-TCACAAGGCCTTAGGC-CAAAATTTTCAt
gi|16 : ------ATT-TGTG---TGTGATATC-ATG-TGTG-TAT-A-TT--T--A--------T-----T-GTA-T--AA-TGT-CTGAAAATAAAGCATTA---AAAA
gi|17 : AC-----TACAT------ATG-TTTACTG--T-GTA-TTATAAG---G---TATAT--TG
gi|2 : ttttaAAAGGAGTTTA-TAGCCCCAACTTTAAAAAAAAAAATAAGTGGGAAAACTTAT-TAGATGAATCCTTATCTGACAAAGACTGGGAATTT-ATTTTGTAAATGCTT-CGTTATGTACGAAGGATACAAAAATAATTTTATT-TTCAA-TAC-C-AAATA-CTGATGAACTAT-ATTG-TTACCAACTCCTT-TC-TT-CATAAAA-TTAAAATTTCAGATAATAA----TT--TGTG-T-ACTTTG-T-AAATG---TGAAGC-AGAAACGA-TA-AC-TCA---CATA-TTT----TAC--GATT--GTG-TG--------CAA-GTCAA----CTTA---TTTTGG----ATGA---TTTT----G---T--GCAG-T-GG--TTTA---A--TG-C-AA-T--TGAAA---A-TGATTA---T-------AAG-ATA-T-CAAAAAAAA---T---GTTTTACTTGGT-AACA-C-A--GAAGG-GAGCT-GTTT---AGAAAAATGT--CTTTTATTGGTTGCAAAAA---GTTATTTAT-TTTAT---TCTA-GA-TCACAAGGCCTTAGGC-CAAAATTTTCAGAGGCATTGAA-TTTATTCAAG-TTT-TAT--AGAAATA-TGGAAAATT-GC---TGTGAAA-AGGTATTCA---AAT-GTA-AA-TCC-GAA-ATGCT-TAGC-A--AA-T--GGGCAA-TATATG------------ATAT-T---------GTTTATA-A--CA-A----------GTGA-TGG-AAAACCA-TGT------A--TA--TA----GA-GC-TACA-TC--AA-CTA-C-ATGT-A----CATG------TTA----A-----TAC-----T-TT-G--AAT--CAG-TATCAA-TA-TCTTTTTTTT-CCCAC-----TACATG--TATATG-TTTACTG--T-GTA-TCATAAG---G---TATAT--TGG--CTGTCGTG-T-GC-TA------TATT-ATTTACATGTACAGTAC----TACTTTGATTGA-TTA-TAT--GAATG------TGTGTGGTTGTGTGTG------ATT-TTAG---TGTAATGTC-ATA-TGTG-TAT-A-TTA-T--G--------T-----T-ATA-T--AAATGT-CTAAAAATAAAACATTA---AAAAA
gi|3 : AT-ATTGC-TACCAACTCCTT-TC-TTTCATAAAA-TTAAA-TTTC-GATAATAA----TT--TGTG-TGACTTTTTTTAAATG---TGAAGC-AGAA-CAA-TACAC-TCA---CATAATTT----CATTTAGTT--GTG-TG--------CAA-GTCAA-----TTA---TTGTGA----ATGA---TTTT----AGTCT--GCAG-T-GG--TTTA--CA--TG-C-AA-T--TGAAA---G-TC-TTG---TTCTTGAGAAG-ATAAT-C--CAAAAA---TATTGTTTTACTTGGTTAACATC-ATTGAAGGGAAGCT-GTTTTTAAAAAAAATTTAGCTTTATTTGGTTGCAAAAA---GTT-TATAT-TTTATTATTCTA-GA-TCACAAGGCCTTAGGCACAAAATTTTCAGCAGCAGTGAA-TTACTTCAAGCTTT-TAT--AG-AATA-TGGAAAATT-AC---TGGG--A-AGGTATTAA---AAT-GTA-AA-T-C-AAA-ATGCT-TAGCAA--AA-T--GTGGAA-TATATG------------ATAT-T---------GTA---A-A--CA-A----------GTGA-T-G-AAAACCATTGT------A--TA--TA----GA-ACTTACATTC--AA-ACA-CAATGT-A----CATG------TTA----A-----TAC-----TGTT-GA-AAT--CAG-TATC-A-TATTCTTTTTTTTCCCCAC-----TAGA-----ATGT--TTTACTG----GTT-TCATAAG---GGTATATAT--TAGGCCTGTCGTG-T-GCATA------TATT-AATTAT---CACAATAC----TACTTTGATGAG-TTA-TATTGGAATGGTGAAATGTATTGTTGTGTATG----------TTAGAAATGTAATGTCAATA-TATGTTACAA-TTA-T--G--------T-----T-TTA-TTAAAATGT-CTAAAAAAAAAACATT
gi|4 : cAACTAT-ATTGCTTACCAACTTCTT-TC-TT-C-TAAAA-T-AAATTCT-AGATAATAA----TT--TGTG-T-ACTTTTGT-AAATG---TGAAGCCAGAAACAA-TA-AAATCA---CATA-TTT----TAT--GTTT--GTGCTG--------CAA-ATCAA----TTTA---TTTTGA----ATGA---TTTT----G---TTTGCAG-T-GG--TTTA--TA--GG-C-AAAT--TGAAA---A-TTATTA---T-------AAG-------------------T---GTTTAATT--GT-ACCA-CCA--GAAGG-AAGCT-GTTT---AGGAAATTTT--TCTTTATTGG-TGCAAAAA---GTT-TATTTATTTAT---TCTA-GATTCACAA-GCCTTA-GC-CAAAA-TTTCAGAGGCAGTGAATTTTATCAAAG-TTT-TAT--AGAAATA-T-GAAAATTAACG--TGTGAAA-AGGCATTAATTTAAT-GTATAA-TCCAAAA-ATGCT-TAGC-A--AAGTGGGGGCAA-TAAATG------------ATCA-T---------ATGTATATA--CACA----------GTGA-TGGAAAAACCA-TGG------A--TA--TATTAGAA-GC-TACA-TTCAAA-CTA-C-ATGT-A----CATG------TTA----A-----TAC-----T-TT-GGAAAT--CAGCTATCAA-TATTCTTTTTTTT-TTCAA------ACATA--TATATGATTTACCG--TCGTATTCATAAGCGTA---TATAT--TGG--CTGTCGTGTT-GC-TA------TATT-ATTTACA--T---GTAC----TACTTTAATTGATTTATTAT--GAAAG------TG---------GTGTG------ATTGTTAG---TGTAATGTC-ATA-TGGA-TAC-ATTTA-T--A--------TG----T-ATACT--AAATGTACT-CAAATAAAACATTA--TAAAAAtattgaaaa
gi|5 : TAC-ATTGCTTAT-AACTCGTT-TCCTT-CACAAAACTTAAACTTGTAGAAAATGA----CAAATGTT-T-CTCTTGT--AAATGAG-TGAAG--AGAAACAA-TT-TC-TCA---TATA-TTT-----AT--GATA--TTG-T----------AATATCAC----CCTAGCCTTTTGG----G-GAGATTTTT----G---T--GAAA-TTGG-----AACCAGTTG-CTGA-T--TGAAA---AAGGATTA---T-------AAG-ATT-TTC--GAAAAGAATT---GTATTACTTGGA-AATG-T-T--AATGG-AAGCTTGTT-------ATATTTT--TTCTTTCTA-TAGCAAAAA---AGCATATAT-ATTAT---GCCAAGA-TC-CAAGG--TTTGAC-CAAA-TTTTTAT-GCCATTAAA-TTTGTTTAAA-CATATAT--AGAAATA-TTGAAAAA--AT---TGT-AAA-TGCTTTCCA---AA--G-A-AA-TCC-AAA-ACTCC-TAGT-A--AA-T--G
gi|6 : -TTT-TATCTAGAA----T-AAAAGTT-AC---CATGAAA-AGGTATTTA---AAT-GTA-AA-ACC-AAA-ATGCT-TAGC-A--AA-T--GGGCAAATATATG------------ATAT-T---------GTATATA-AAACA-A----------GTGAATGG-AAAACGA-TGT------A--TA--TA----GATGC-TACA-TC--AA-CAA-C-ATGT-A----CATG------TTAT---A-----AAC-----T-TTTG--AAT--CAG-TATCAA-TA-TCTTTTTTT---CCAC-----TA------TATATG-TTTACTG--T-GTA-TCATAAG---G---TATAT--TGG--CTGTCGTG-TTGC-TA------TATT-ATTTACA------GTAC----TACTTTGATTGA-TTA-TAT--GAATG------TGTGTGGTTGTGTGTG------ATTGTTAG---TGTAATGTC-ATA-TGCG-TAT-ATTTA-T-----------T-----T-ATA-T--AAATGT-CTGAAAATAAAACATTA--TAAAAAacactattatacttaacgttttgatatttagtttgtagaaaacctatttaac
gi|7 : ttt------A--TA--TA----------TACA-TC--AA-CTA-C-ATGT-A----CATACATGTTTTA----AATTTATAC-----T-TT-G--AAT--CAG-TATCAA-T------TTCGTT-CTCAC-----TA------TATATG-TTT---G--T-ATA-TTATAAG---G---CATAT--TAA--CTGTCCCG-T-GC-TA------TATT-ATTTACAGTCATAATAAATTGTACTTTGATTGA-TTA-TAT--GAATG------TGTATGATTGTGTGTGTATGTAATTGTTAG---TGTAATGTC-ATA-TGTG-TAT-A-TCA-T--G--------TGTA--T-ATA-T--AAATGT-CTGAAAATAAAGCATTA--a
gi|8 : cGT------A--TA--TA----GA-GC-TACA-TC--AA-CTA-C-ATGT-A----CATG------TTA----A-----TAC-----T-TT-G--AAT--CAG-TATCAA-T----TTTTTTTT-TCCAC-----TA------TATATG-TTTAGTG--T-GTA-TCATAAG---G---TATAT--TGG--CTGTCGTG-T-GC-TA------TATT-ATT------TACAGTAC----TA---TGATTGA-TTA-TAT--GAATG------TGTGTGATTG----------------TTAG---TGTAATGTC-ATA-TGTG-TAT-A-TTA-T--GTTTTAAAAT-----T-ATA-T--AAATGT-CTAAAAATAAAACATTA--TAAAAAaa
gi|9 : --CTTCTGTTAGCTTCGAA-----GTT-TATAT-GTTAT---TCCA-GA-TCACAAGGCCCTAAGT-C-ATTTTTTCTGAGGCAGTG-A-TTTATCTAAG-TGA-CAC--AGAAATA-TGGAAAAAT-AC---TTTGTAA-ATGTGTTCC---ATT-CTA-AAGCCC-AAATATGTA-TGGC-AAGAA-T----GCAA-TTTACG-------------TAT-TTTTATGTACGTGTATA-A--AA-AT---------GTGA-TGA-AAAACCA-
Alignments
lowQualScore : 1 1 2222 1 1 11 1 1 1 1 1 1 222 1 1 111 11111111 11 222 111 22222 11 11 22222222 22222 1111 1111 111 22222222222 111 222222 11 11111 55555555555555555555555555555555555 1 2222222 1 1 22222 11111 111 111 1 222222222222 222222222 3333333333 111111 11111 1111 111111 1111111111 11111 1111 11 11111 333333 111111 22222222 1111 111111 2222222222 33333333333333333
lowQualScore : 5 5 1 4444 5 5 88 5 5 5 5 5 5 000 5 8 11 8 6 333 8 3 8 99 0 88888888 8 8 88 555 0 8 0 8 8 8 444 8 33333 11 11 8 99999999 8 55555 4444 7777 0 444 66666666666 5 8 8 111 666666 999 8 11 66666 0 11111111111111111111111111111111111 3 0 7777777 0 0 44444 1 8 1 1 33333 6 77 111 6 6 1 6 3 5 0 8 0 5 1 5 77 7 1 5 333 0 5 0 888 88 5 777 5 5 5 5 66 5 66 1 555555555555 5 222222222 00 5 77 5 0000000000 5 5 5 444444 66 66 00000 5 5 5 66 5 2 5 5 5 0000 444444 9999999999 22222 5 3333 66 8 4 00 4 00000 999999 4 55 4 4 777 888 66 66 5 5 5 444444 5 77777777 0000 5 5 66 444444 0 0 3 7777777777 777 4 4 4 4 8 4 00000000000000000 8 4 55 4 3 0 999
lowQualScore : . . . .... . . .. . . . . . . ... . . .. . . ... . . . .. . ........ . . .. ... . . . . . . ... . ..... .. .. . ........ . ..... .... .... . ... ........... . . . ... ...... ... . .. ..... . ................................... . . ....... . . ..... . . . . ..... . .. ... . . . . . . . . . . . . .. . . . ... . . . ... .. . ... . . . . .. . .. . ............ . ......... .. . .. . .......... . . . ...... .. .. ..... . . . .. . . . . . .... ...... .......... ..... . .... .. . . .. . ..... ...... . .. . . ... ... .. .. . . . ...... . ........ .... . . .. ...... . . . .......... ... . . . . . . ................. . . .. . . . ...
lowQualScore : 5 0 0 5555 5 5 55 5 0 5 5 5 5 000 5 0 66 0 0 666 0 8 2 22 8 22222222 0 0 66 000 8 0 8 0 0 0 000 0 44444 00 00 0 00000000 0 22222 8888 0000 8 000 22222222222 0 0 0 888 222222 222 0 00 00000 8 77777777777777777777777777777777777 2 0 2222222 0 0 55555 4 0 0 7 33333 7 77 777 7 7 0 7 5 6 8 0 3 7 9 7 99 9 0 7 888 4 0 2 888 22 0 555 0 0 0 0 99 0 99 4 666666666666 7 999999999 66 7 99 7 7777777777 7 7 7 444444 99 99 99999 0 0 0 99 0 2 0 0 0 6666 444444 1111111111 55555 0 9999 99 9 4 88 4 00000 222222 0 55 0 0 888 888 99 99 0 0 0 444444 0 55555555 6666 0 0 99 444444 4 1 1 0000000000 000 0 0 0 0 0 0 22222222222222222 0 0 55 0 0 8 444
consensus : AAAGGAGTTTAATAGCCCCAACTTTAAAANAAAAAATAAGTGGGAAAACTTATATAGATGAATCCTTATCTGACAAAGACTGGGAATTTTATTTTGTAAATGCTTTCGTTATGTACGAAGGATACAAAAATAATTTTATTATTCAAATACGCGAAATATCTGATGAACTAT-ATTGCTTACCAACTCCTT-TC-TT-CATAAAA-TTAAACTTTCAGATAATAA----TT--TGTG-T-ACTTTGTT-AAATG---TGAAGC-AGAAACAA-TA-AC-TCA---CATA-TTT----CAT--GATT--GTG-TG--------CAA-ATCAA----CTTA---TTTTGG----ATGA---TTTT----G---T--GCAG-T-GG--TTTA--CA--TG-C-AA-T--TGAAA---A-TGATTA---T-------AAG-ATA-T-CGAAAAAAA-T---GTTTTACTTGGT-AACG-C-A--GAAGG-AAGCT-GTTT----AGGAAATTT-TCTTTTNTTGGTTGCAAAA---A-GTT-TATAT-NTTATT---CTA-GA-TCACAAGGCCTTAGGC-CAAAATTTTCAGAGGCAGTGAA-TTTATTTAAG-TTT-TAT--AGAAATATGGAAAANT-AC---TGTGAAA-AGGTATTCA---AAT-GTA-AA-TCC-AAA-ATGCT-TAGC-A--AA-T--GGGCAA-TATATG------------ATAT-T---------GTGTATA-A--CA-A----------GTGA-TGG-AAAACCA-TGT------A--TA--TA----GA-GC-TACA-TC--AA-CTA-C-ATGT-A----CATG------TTA----A-----TAC-----T-TT-G--AAT--CAG-TATCAA-TA-TCTTTTTTTT-CCCAC-----TACAT---TATATG-TTTACTG--T-GTA-TCATAAG---G---TATAT--TGG--CTGTCGTG-T-GC-TA------TATT-ATTTACA--TACAGTAC----TACTTTGATTGA-TTA-TAT--GAATG------TGTGTGGTTGTGTGTG------ATT-TTAG---TGTAATGTC-ATA-TGTG-TAT-A-TTA-T--G--------T-----T-ATA-T--AAATGT-CTGAAAATAAAACATTA--TAAAAA
Reference ( family-829 ) : AAAGGAGTTTAATAGCCCCAACTTTAAAANAAAAAATAAGTGGGAAAACTTATATAGATGAATCCTTATCTGACAAAGACTGGGAATTTTATTTTGTAAATGCTTTCGTTATGTACGAAGGATACAAAAATAATTTTATTATTCAAATACGCGAAATATCTGATGAACTAT-ATTGCTTACCAACTCCTT-TC-TT-CATAAAA-TTAAACTTTCAGATAATAA----TT--TGTG-T-ACTTTGTT-AAATG---TGAAGC-AGAAACAA-TA-AC-TCA---CATA-TTT----CAT--GATT--GTG-TG--------CAA-ATCAA----CTTA---TTTTGG----ATGA---TTTT----G---T--GCAG-T-GG--TTTA--CA--TG-C-AA-T--TGAAA---A-TGATTA---T-------AAG-ATA-T-CGAAAAA---T---GTTTTACTTGGT-AACG-C-A--GAAGG-AAGCT-GTTT----AGGAAATTT-TCTTTTNTTGGTTGCAAAA---A-GTT-TATAT-NTTATT---CTA-GA-TCACAAGGCCTTAGGC-CAAAATTTTCAGAGGCAGTGAA-TTTATTTAAG-TTT-TAT--AGAAATATGGAAAANT-AC---TGTGAAA-AGGTATTCA---AAT-GTA-AA-TCC-AAA-ATGCT-TAGC-A--AA-T--GGGCAA-TATATG------------ATAT-T---------GTGTATA-A--CA-A----------GTGA-TGG-AAAACCA-TGT------A--TA--TA----GA-GC-TACA-TC--AA-CTA-C-ATGT-A----CATG------TTA----A-----TAC-----T-TT-G--AAT--CAG-TATCAA-TA-TCTTTTTTTT-CCCAC-----TACAT---TATATG-TTTACTG--T-GTA-TCATAAG---G---TATAT--TGG--CTGTCGTG-T-GC-TA------TATT-ATTTACA--TACAGTAC----TACTTTGATTGA-TTA-TAT--GAATG------TGTGTGGTTGTGTGTG------ATT-TTAG---TGTAATGTC-ATA-TGTG-TAT-A-TTA-T--G--------T-----T-ATA-T--AAATGT-CTGAAAATAAAACATTA--TAAAAA
gi|1 : AAAGGAGTTTAATAGCCCCAA-TTTAAAACAAAAA----GTGGGAAA-CTTATATAGATAA--CCTTATCTGACAAAGACTGGAAATTTTATTTT-TAAATGTTTTCGTTATGTACGAAGGATACAAAAATAATTT-ATTATTCAAATACGCGAAATATCTGATGAACTATAATTGC-TACCAACTCCTTATCATT---TAAAA-TCAAACTTTCTGATAG-AAGATTTT--TGTGTT-ACTTTGTT-ACACATCCTG-AGC-AGAAACAATTA-AC-TTGTACCATA-CTTCTCACAT--GATTTGATG-TGGGATAGGTCCA-ATCAAGAGTGTTA----TTTGGAGATATGA---CTTTATAGG---T--G-AGCT-GGAATTTA---A--TGAT-AA-TTCTGAAAAACA-TGATTAGATT-------AAATACA-T-CAAAAA
gi|1 : ga---TGTCAAAGAGGTATTTA---AATTGTA-AA-CTC-CAA-ATGCT-TAGC-A--A--T--GGTCAA-TATATGCACTAGGTTTAGATATAT---------GGACCTA-A--CA-AACACTCGAAAGTG---GG-AAAACCA-TGTTGTGCTAGTTACTTA----GA-GC-TACA-TG--AAGCTAGC-ATGTTA----CAT--------TA----A-----CACATTGGT-TTAG--AATTACAGATATTAAATA-TC-TTTTTTT-CCCACTAATATACATG--TAT-TG-TTTACTGGAT-GTA-gcaattaataacttgtgttggtgtatatacttttgttgtaatcagacagaagaaaatacgttgggtatctaaagaattgtttcttattactatgtgaatgcaaaatacagtcttcatctattaaacttagcatcagttaaatagatccaacaaaaggtcctatagtcacaaaaaattttagatcagctaggatgacaagtcttgtatcctatcataactcttgtcataagacacataccttgtccgaaacgatattataacttgtcaaagaggtatttaaattgtaaactccaaatgcttagcaatggtcaatatatgcactaggtttagatatatggacctaacaaacactcgaaagtgggaaaaccatgttgtgctagttacttagagctacatgaagctagcatgttacattaacacattggtttagaattacagatattaaatatctttttttcccactaatatacatgtattgtttactggatgtaaattgcaaaaaatacaggagtgtatgaaaagaataatgaactgccgattgtgctaattagaaaaaagtaagataattttatttttgagcagatactacttgtgaattgattgtatttctagaattagtgctgttcgtgatctttcgtgtggatgcttgtaagatagattaatgttgccataatataattagattcatgaagtatataaacataacaaca
gi|10 : gaaaaggagtttaatagccccaatttaaaacaaaaagtgggaaacttatatagataaccttatctgacaaagactggaaattttatttttaaatgttttcgttatgtacgaaggatacaaaaataatttattattcaaatacgcgaaatatctgatgaactataattgctaccaactccttatcatttaaaatcaaactttctgatagaagatttttgtgttactttgttacacatcctgagcagaaacaattaacttgtaccatacttctcacatgatttgatgtgggataggtccaatcaagagtgttatttggagatatgactttataggtgagctggaatttaatgataattctgaaaaacatgattagattaaatacatcaaaaagcaattaataacttgtgttggtgtatatacttttgttgtaatcagacagaagaaaatacgttgggtatctaaagaattgtttcttattactatgtgaatgcaaaatacagtcttcatctattaaacttagcatcagttaaatagatccaacaaaaggtcctatagtcacaaaaaattttagatcagctaggatgacaagtcttgtatcctatcataactcttgtcataagacacataccttgtccgaaacgatattataactTGTTTAAA-CAT-TAT--AGAAATATTGAAAAAT-ATTTGTGTGAAA-TGCTTTCCA---AA--GTA-AA-T-C-AAA----CTCTAGT-A--AA-T--GGACAGCTATATG------------ATAaattgcaaaaaatacaggagtgtatgaaaagaataatgaactgccgattgtgctaattagaaaaaagtaagataattttatttttgagcagatactacttgtgaattgattgtatttctagaattagtgctgttcgtgatctttcgtgtggatgcttgtaagatagattaatgttgccataatataattagattcatgaagtatataaacataacaaca
gi|11 : G-TATCAA-TA-TCTTTTTTTT-CCCAC-----TATATACATGTATG-TTTACTG--T-GTA-TCATAAG---G---TATATATTGG--CTGTCGTG-T-GC-TA------TATT-ATTTACA------GTAC----TACTTTGATTGA-TTA-TAT--GAATG------CGTGTGATTGT----------------TAG---TGTAATGTC-ATA-TGTG-TAC-A-TTA-T--G--------T-----TTATA-T--AAATGT-CTAAAAATAAAAC---A--TAAAAAaaaaaaaaaaaaagaaatatatgttttttgatatttagtttgttgacaaactattttaacattcttaaggataaacatttattttttttttcttagagtatgtctttcttattattt
gi|12 : GG--CTGTCATG-T-GT-CAGGTGCTTGTTTAGTTACA--TGCA--------TGCTTC--TTAA-T-A-CAT--AAGAG------GGAGGGG----GAGGG------AT----GG---TGTAATGTC-ATA-TGTG-TAT-A-TTA-TGGG--------TATATAT-ATA-T--ATATGT-CTGAAAATAAAGCATTATTTAAAAAa
gi|13 : TATG------------ATAT-T---------GTGTACA-A--CA-A----------GTGA-TGA-AAAACCA-TGT------A--TA--TA----AA-GC-TATA-TC--AA-C-A-C-ATGT-ACATGCATG------TTAATTTA-----TGC-----T-TT-A--AAT--CAG-TATCA---A-TTTTTTCTCT-CTCAC-----TA------TATATG---TA-TG--T-ATA-TTATAAG---a
gi|14 : GTGTG------ACT-GTAG---TGTAATGTC-ATACTGCG-TAG-A-TTAAT--G--------T-----TTATA-T--AAATGT-CTAAAAAAAAAAC-TTA--TAAAAA
gi|15 : gtgGGAAATTT-TCTTTTATTGGTTGCAAAAAAAA-GTT-TATTT-ATTATT---CTT-GA-TCACAAGGCCTTAGGC-CAAAATTTTCAt
gi|16 : ------ATT-TGTG---TGTGATATC-ATG-TGTG-TAT-A-TT--T--A--------T-----T-GTA-T--AA-TGT-CTGAAAATAAAGCATTA---AAAA
gi|17 : AC-----TACAT------ATG-TTTACTG--T-GTA-TTATAAG---G---TATAT--TG
gi|2 : ttttaAAAGGAGTTTA-TAGCCCCAACTTTAAAAAAAAAAATAAGTGGGAAAACTTAT-TAGATGAATCCTTATCTGACAAAGACTGGGAATTT-ATTTTGTAAATGCTT-CGTTATGTACGAAGGATACAAAAATAATTTTATT-TTCAA-TAC-C-AAATA-CTGATGAACTAT-ATTG-TTACCAACTCCTT-TC-TT-CATAAAA-TTAAAATTTCAGATAATAA----TT--TGTG-T-ACTTTGT--AAATG---TGAAGC-AGAAACGA-TA-AC-TCA---CATA-TTT----TAC--GATT--GTG-TG--------CAA-GTCAA----CTTA---TTTTGG----ATGA---TTTT----G---T--GCAG-T-GG--TTTA---A--TG-C-AA-T--TGAAA---A-TGATTA---T-------AAG-ATA-T-CAAAAAAAA-T---GTTTTACTTGGT-AACA-C-A--GAAGG-GAGCT-GTTT----AGAAAAATG-TCTTTTATTGGTTGCAAAA---A-GTTATTTAT-TTTATT---CTA-GA-TCACAAGGCCTTAGGC-CAAAATTTTCAGAGGCATTGAA-TTTATTCAAG-TTT-TAT--AGAAATATGGAAAATT-GC---TGTGAAA-AGGTATTCA---AAT-GTA-AA-TCC-GAA-ATGCT-TAGC-A--AA-T--GGGCAA-TATATG------------ATAT-T---------GTTTATA-A--CA-A----------GTGA-TGG-AAAACCA-TGT------A--TA--TA----GA-GC-TACA-TC--AA-CTA-C-ATGT-A----CATG------TTA----A-----TAC-----T-TT-G--AAT--CAG-TATCAA-TA-TCTTTTTTTT-CCCAC-----TACATG--TATATG-TTTACTG--T-GTA-TCATAAG---G---TATAT--TGG--CTGTCGTG-T-GC-TA------TATT-ATTTACATGTACAGTAC----TACTTTGATTGA-TTA-TAT--GAATG------TGTGTGGTTGTGTGTG------ATT-TTAG---TGTAATGTC-ATA-TGTG-TAT-A-TTA-T--G--------T-----T-ATA-T--AAATGT-CTAAAAATAAAACATTA---AAAAA
gi|3 : AT-ATTGCT-ACCAACTCCTT-TC-TTTCATAAAA-TTAAA-TTTC-GATAATAA----TT--TGTG-TGACTTTTTTTAAATG---TGAAGC-AGAA-CAA-TACAC-TCA---CATAATTT----CATTTAGTT--GTG-TG--------CAA-GTCAA-----TTA---TTGTGA----ATGA---TTTT----AGTCT--GCAG-T-GG--TTTA--CA--TG-C-AA-T--TGAAA---G-TC-TTG---TTCTTGAGAAG-ATAAT-CCAAAAA---TATTGTTTTACTTGGTTAACATC-ATTGAAGGGAAGCT-GTTTTTAAAAAAAATTTAGCTTTATTTGGTTGCAAAA---A-GTT-TATAT-TTTATTATTCTA-GA-TCACAAGGCCTTAGGCACAAAATTTTCAGCAGCAGTGAA-TTACTTCAAGCTTT-TAT--AG-AATATGGAAAATT-AC---TGGG--A-AGGTATTAA---AAT-GTA-AA-T-C-AAA-ATGCT-TAGCAA--AA-T--GTGGAA-TATATG------------ATAT-T---------GTA---A-A--CA-A----------GTGA-T-G-AAAACCATTGT------A--TA--TA----GA-ACTTACATTC--AA-ACA-CAATGT-A----CATG------TTA----A-----TAC-----TGTT-GA-AAT--CAG-TATC-A-TATTCTTTTTTTTCCCCAC-----TAGA-----ATGT--TTTACTG----GTT-TCATAAG---GGTATATAT--TAGGCCTGTCGTG-T-GCATA------TATT-AATTAT---CACAATAC----TACTTTGATGAG-TTA-TATTGGAATGGTGAAATGTATTGTTGTGTATG----------TTAGAAATGTAATGTCAATA-TATGTTACAA-TTA-T--G--------T-----T-TTA-TTAAAATGT-CTAAAAAAAAAACATT
gi|4 : cAACTAT-ATTGCTTACCAACTTCTT-TC-TT-C-TAAAA-T-AAATTCT-AGATAATAA----TT--TGTG-T-ACTTTTGT-AAATG---TGAAGCCAGAAACAA-TA-AAATCA---CATA-TTT----TAT--GTTT--GTGCTG--------CAA-ATCAA----TTTA---TTTTGA----ATGA---TTTT----G---TTTGCAG-T-GG--TTTA--TA--GG-C-AAAT--TGAAA---A-TTATTA---T-------AAG-----------------T---GTTTAATT--GT-ACCA-CCA--GAAGG-AAGCT-GTTT----AGGAAATTT-TTCTTTATTGG-TGCAAAA---A-GTT-TATTTATTTATT---CTA-GATTCACAA-GCCTTA-GC-CAAAA-TTTCAGAGGCAGTGAATTTTATCAAAG-TTT-TAT--AGAAATAT-GAAAATTAACG--TGTGAAA-AGGCATTAATTTAAT-GTATAA-TCCAAAA-ATGCT-TAGC-A--AAGTGGGGGCAA-TAAATG------------ATCA-T---------ATGTATATA--CACA----------GTGA-TGGAAAAACCA-TGG------A--TA--TATTAGAA-GC-TACA-TTCAAA-CTA-C-ATGT-A----CATG------TTA----A-----TAC-----T-TT-GGAAAT--CAGCTATCAA-TATTCTTTTTTTT-TTCAA------ACATA--TATATGATTTACCG--TCGTATTCATAAGCGTA---TATAT--TGG--CTGTCGTGTT-GC-TA------TATT-ATTTACA--T---GTAC----TACTTTAATTGATTTATTAT--GAAAG------TG---------GTGTG------ATTGTTAG---TGTAATGTC-ATA-TGGA-TAC-ATTTA-T--A--------TG----T-ATACT--AAATGTACT-CAAATAAAACATTA--TAAAAAtattgaaaa
gi|5 : TAC-ATTGCTTAT-AACTCGTT-TCCTT-CACAAAACTTAAACTTGTAGAAAATGA----CAAATGTT-T-CTCTTGT--AAATGAG-TGAAG--AGAAACAA-TT-TC-TCA---TATA-TTT-----AT--GATA--TTG-T----------AATATCAC----CCTAGCCTTTTGG----G-GAGATTTTT----G---T--GAAA-TTGG-----AACCAGTTG-CTGA-T--TGAAA---AAGGATTA---T-------AAG-ATT-TTCGAAAAGAATT---GTATTACTTGGA-AATG-T-T--AATGG-AAGCTTGTT--------ATATTT-TTTCTTTCTA-TAGCAAAA---AAGCA-TATAT-ATTATG---CCAAGA-TC-CAAGG--TTTGAC-CAAA-TTTTTAT-GCCATTAAA-TTTGTTTAAA-CATATAT--AGAAATATTGAAAAA--AT---TGT-AAA-TGCTTTCCA---AA--G-A-AA-TCC-AAA-ACTCC-TAGT-A--AA-T--G
gi|6 : -TTT-TATCTAGAA-TA---AAAGTT-AC---CATGAAA-AGGTATTTA---AAT-GTA-AA-ACC-AAA-ATGCT-TAGC-A--AA-T--GGGCAAATATATG------------ATAT-T---------GTATATA-AAACA-A----------GTGAATGG-AAAACGA-TGT------A--TA--TA----GATGC-TACA-TC--AA-CAA-C-ATGT-A----CATG------TTAT---A-----AAC-----T-TTTG--AAT--CAG-TATCAA-TA-TCTTTTTTT---CCAC-----TA------TATATG-TTTACTG--T-GTA-TCATAAG---G---TATAT--TGG--CTGTCGTG-TTGC-TA------TATT-ATTTACA------GTAC----TACTTTGATTGA-TTA-TAT--GAATG------TGTGTGGTTGTGTGTG------ATTGTTAG---TGTAATGTC-ATA-TGCG-TAT-ATTTA-T-----------T-----T-ATA-T--AAATGT-CTGAAAATAAAACATTA--TAAAAAacactattatacttaacgttttgatatttagtttgtagaaaacctatttaac
gi|7 : ttt------A--TA--TA----------TACA-TC--AA-CTA-C-ATGT-A----CATACATGTTTTA----AATTTATAC-----T-TT-G--AAT--CAG-TATCAA-T------TTCGTT-CTCAC-----TA------TATATG-TTT---G--T-ATA-TTATAAG---G---CATAT--TAA--CTGTCCCG-T-GC-TA------TATT-ATTTACAGTCATAATAAATTGTACTTTGATTGA-TTA-TAT--GAATG------TGTATGATTGTGTGTGTATGTAATTGTTAG---TGTAATGTC-ATA-TGTG-TAT-A-TCA-T--G--------TGTA--T-ATA-T--AAATGT-CTGAAAATAAAGCATTA--a
gi|8 : cGT------A--TA--TA----GA-GC-TACA-TC--AA-CTA-C-ATGT-A----CATG------TTA----A-----TAC-----T-TT-G--AAT--CAG-TATCAA-T----TTTTTTTT-TCCAC-----TA------TATATG-TTTAGTG--T-GTA-TCATAAG---G---TATAT--TGG--CTGTCGTG-T-GC-TA------TATT-ATT------TACAGTAC----TA---TGATTGA-TTA-TAT--GAATG------TGTGTGATTG----------------TTAG---TGTAATGTC-ATA-TGTG-TAT-A-TTA-T--GTTTTAAAAT-----T-ATA-T--AAATGT-CTAAAAATAAAACATTA--TAAAAAaa
gi|9 : CTTCTGTTAGCTTCGAA------GTT-TATAT-GTTATT---CCA-GA-TCACAAGGCCCTAAGT-C-ATTTTTTCTGAGGCAGTG-A-TTTATCTAAG-TGA-CAC--AGAAATATGGAAAAAT-AC---TTTGTAA-ATGTGTTCC---ATT-CTA-AAGCCC-AAATATGTA-TGGC-AAGAA-T----GCAA-TTTACG-------------TAT-TTTTATGTACGTGTATA-A--AA-AT---------GTGA-TGA-AAAACCA-
Alignments
lowQualScore : 1 1 2222 1 1 11 1 1 1 1 1 1 222 1 1 111 11111111 11 222 111 22222 11 11 22222222 22222 1111 1111 111 22222222222 111 222222 11 11111 33333333333 222222222 2 1 2222222 1 1 22222 111 111 111 1 222222222222 222222222 3333333333 111111 11111 1111 111111 1111111111 11111 1111 11 11111 333333 111111 22222222 1111 111111 2222222222 33333333333333333
lowQualScore : 5 5 1 4444 5 5 88 5 5 5 5 5 5 000 5 8 11 8 6 333 8 3 8 99 0 88888888 8 8 88 555 0 8 0 8 8 8 444 8 33333 11 11 8 99999999 8 55555 4444 7777 0 444 66666666666 5 8 8 111 666666 999 8 11 66666 0 11111111111 111111111 44 0 3 0 7777777 0 0 44444 1 8 1 1 1 6 111 6 77 111 6 6 1 6 5 88 0 666 77 7 1 5 333 0 5 0 888 88 5 777 5 5 5 5 66 5 66 1 555555555555 5 222222222 00 5 77 5 0000000000 5 5 5 444444 66 66 00000 5 5 5 66 5 2 5 5 5 0000 444444 9999999999 22222 5 3333 66 8 4 00 4 00000 999999 4 55 4 4 777 888 66 66 5 5 5 444444 5 77777777 0000 5 5 66 444444 0 0 3 7777777777 777 4 4 4 4 8 4 00000000000000000 8 4 55 4 3 0 999
lowQualScore : . . . .... . . .. . . . . . . ... . . .. . . ... . . . .. . ........ . . .. ... . . . . . . ... . ..... .. .. . ........ . ..... .... .... . ... ........... . . . ... ...... ... . .. ..... . ........... ......... .. . . . ....... . . ..... . . . . . . ... . .. ... . . . . . .. . ... .. . . . ... . . . ... .. . ... . . . . .. . .. . ............ . ......... .. . .. . .......... . . . ...... .. .. ..... . . . .. . . . . . .... ...... .......... ..... . .... .. . . .. . ..... ...... . .. . . ... ... .. .. . . . ...... . ........ .... . . .. ...... . . . .......... ... . . . . . . ................. . . .. . . . ...
lowQualScore : 5 0 0 5555 5 5 55 5 0 5 5 5 5 000 5 0 66 0 0 666 0 8 2 22 8 22222222 0 0 66 000 8 0 8 0 0 0 000 0 44444 00 00 0 00000000 0 22222 8888 0000 8 000 22222222222 0 0 0 888 222222 222 0 00 00000 8 00000000000 888888888 22 0 2 0 2222222 0 0 55555 4 0 0 0 7 7 777 7 77 777 7 7 0 7 6 88 3 777 99 9 0 7 888 4 0 2 888 22 0 555 0 0 0 0 99 0 99 4 666666666666 7 999999999 66 7 99 7 7777777777 7 7 7 444444 99 99 99999 0 0 0 99 0 2 0 0 0 6666 444444 1111111111 55555 0 9999 99 9 4 88 4 00000 222222 0 55 0 0 888 888 99 99 0 0 0 444444 0 55555555 6666 0 0 99 444444 4 1 1 0000000000 000 0 0 0 0 0 0 22222222222222222 0 0 55 0 0 8 444
consensus : AAAGGAGTTTAATAGCCCCAACTTTAAAANAAAAAATAAGTGGGAAAACTTATATAGATGAATCCTTATCTGACAAAGACTGGGAATTTTATTTTGTAAATGCTTTCGTTATGTACGAAGGATACAAAAATAATTTTATTATTCAAATACGCGAAATATCTGATGAACTAT-ATTGCTTACCAACTCCTT-TC-TT-CATAAAA-TTAAACTTTCAGATAATAA----TT--TGTG-T-ACTTTGTT-AAATG---TGAAGC-AGAAACAA-TA-AC-TCA---CATA-TTT----CAT--GATT--GTG-TG--------CAA-ATCAA----CTTA---TTTTGG----ATGA---TTTT----G---T--GCAG-T-GG--TTTA--CA--TG-C-AA-T--TGAAA---A-TGATTA---T-------AAG-ATA-T-CGAAAAAAATTGTTTTACTTGGT-AACG-C-A--GAAGG-AAGC-TGTTT----AGGAAATTT-TCTTTTNTTGGTTGC-AAAA---AGTT-TATAT-NTTATT---CT-AGA-TCACAAGGCCTTAGGC-CAAAATTTTCAGAGGCAGTGAA-TTTATTTAAG-T-TTTAT--AGAAATATGGAAAANT-AC---TGTGAAA-AGGTATTCA---AAT-GTA-AA-TCC-AAA-ATGCT-TAGC-A--AA-T--GGGCAA-TATATG------------ATAT-T---------GTGTATA-A--CA-A----------GTGA-TGG-AAAACCA-TGT------A--TA--TA----GA-GC-TACA-TC--AA-CTA-C-ATGT-A----CATG------TTA----A-----TAC-----T-TT-G--AAT--CAG-TATCAA-TA-TCTTTTTTTT-CCCAC-----TACAT---TATATG-TTTACTG--T-GTA-TCATAAG---G---TATAT--TGG--CTGTCGTG-T-GC-TA------TATT-ATTTACA--TACAGTAC----TACTTTGATTGA-TTA-TAT--GAATG------TGTGTGGTTGTGTGTG------ATT-TTAG---TGTAATGTC-ATA-TGTG-TAT-A-TTA-T--G--------T-----T-ATA-T--AAATGT-CTGAAAATAAAACATTA--TAAAAA
Reference ( family-829 ) : AAAGGAGTTTAATAGCCCCAACTTTAAAANAAAAAATAAGTGGGAAAACTTATATAGATGAATCCTTATCTGACAAAGACTGGGAATTTTATTTTGTAAATGCTTTCGTTATGTACGAAGGATACAAAAATAATTTTATTATTCAAATACGCGAAATATCTGATGAACTAT-ATTGCTTACCAACTCCTT-TC-TT-CATAAAA-TTAAACTTTCAGATAATAA----TT--TGTG-T-ACTTTGTT-AAATG---TGAAGC-AGAAACAA-TA-AC-TCA---CATA-TTT----CAT--GATT--GTG-TG--------CAA-ATCAA----CTTA---TTTTGG----ATGA---TTTT----G---T--GCAG-T-GG--TTTA--CA--TG-C-AA-T--TGAAA---A-TGATTA---T-------AAG-ATA-T-CGAAAAAAAT-GTTTTACTTGGT-AACG-C-A--GAAGG-AAGC-TGTTT----AGGAAATTT-TCTTTTNTTGGTTGC-AAAA---AGTT-TATAT-NTTATT---CT-AGA-TCACAAGGCCTTAGGC-CAAAATTTTCAGAGGCAGTGAA-TTTATTTAAG-T-TTTAT--AGAAATATGGAAAANT-AC---TGTGAAA-AGGTATTCA---AAT-GTA-AA-TCC-AAA-ATGCT-TAGC-A--AA-T--GGGCAA-TATATG------------ATAT-T---------GTGTATA-A--CA-A----------GTGA-TGG-AAAACCA-TGT------A--TA--TA----GA-GC-TACA-TC--AA-CTA-C-ATGT-A----CATG------TTA----A-----TAC-----T-TT-G--AAT--CAG-TATCAA-TA-TCTTTTTTTT-CCCAC-----TACAT---TATATG-TTTACTG--T-GTA-TCATAAG---G---TATAT--TGG--CTGTCGTG-T-GC-TA------TATT-ATTTACA--TACAGTAC----TACTTTGATTGA-TTA-TAT--GAATG------TGTGTGGTTGTGTGTG------ATT-TTAG---TGTAATGTC-ATA-TGTG-TAT-A-TTA-T--G--------T-----T-ATA-T--AAATGT-CTGAAAATAAAACATTA--TAAAAA
gi|1 : AAAGGAGTTTAATAGCCCCAA-TTTAAAACAAAAA----GTGGGAAA-CTTATATAGATAA--CCTTATCTGACAAAGACTGGAAATTTTATTTT-TAAATGTTTTCGTTATGTACGAAGGATACAAAAATAATTT-ATTATTCAAATACGCGAAATATCTGATGAACTATAATTGC-TACCAACTCCTTATCATT---TAAAA-TCAAACTTTCTGATAG-AAGATTTT--TGTGTT-ACTTTGTT-ACACATCCTG-AGC-AGAAACAATTA-AC-TTGTACCATA-CTTCTCACAT--GATTTGATG-TGGGATAGGTCCA-ATCAAGAGTGTTA----TTTGGAGATATGA---CTTTATAGG---T--G-AGCT-GGAATTTA---A--TGAT-AA-TTCTGAAAAACA-TGATTAGATT-------AAATACA-T-CAAAAA
gi|1 : ga---TGTCAAAGAGGTATTTA---AATTGTA-AA-CTC-CAA-ATGCT-TAGC-A--A--T--GGTCAA-TATATGCACTAGGTTTAGATATAT---------GGACCTA-A--CA-AACACTCGAAAGTG---GG-AAAACCA-TGTTGTGCTAGTTACTTA----GA-GC-TACA-TG--AAGCTAGC-ATGTTA----CAT--------TA----A-----CACATTGGT-TTAG--AATTACAGATATTAAATA-TC-TTTTTTT-CCCACTAATATACATG--TAT-TG-TTTACTGGAT-GTA-gcaattaataacttgtgttggtgtatatacttttgttgtaatcagacagaagaaaatacgttgggtatctaaagaattgtttcttattactatgtgaatgcaaaatacagtcttcatctattaaacttagcatcagttaaatagatccaacaaaaggtcctatagtcacaaaaaattttagatcagctaggatgacaagtcttgtatcctatcataactcttgtcataagacacataccttgtccgaaacgatattataacttgtcaaagaggtatttaaattgtaaactccaaatgcttagcaatggtcaatatatgcactaggtttagatatatggacctaacaaacactcgaaagtgggaaaaccatgttgtgctagttacttagagctacatgaagctagcatgttacattaacacattggtttagaattacagatattaaatatctttttttcccactaatatacatgtattgtttactggatgtaaattgcaaaaaatacaggagtgtatgaaaagaataatgaactgccgattgtgctaattagaaaaaagtaagataattttatttttgagcagatactacttgtgaattgattgtatttctagaattagtgctgttcgtgatctttcgtgtggatgcttgtaagatagattaatgttgccataatataattagattcatgaagtatataaacataacaaca
gi|10 : gaaaaggagtttaatagccccaatttaaaacaaaaagtgggaaacttatatagataaccttatctgacaaagactggaaattttatttttaaatgttttcgttatgtacgaaggatacaaaaataatttattattcaaatacgcgaaatatctgatgaactataattgctaccaactccttatcatttaaaatcaaactttctgatagaagatttttgtgttactttgttacacatcctgagcagaaacaattaacttgtaccatacttctcacatgatttgatgtgggataggtccaatcaagagtgttatttggagatatgactttataggtgagctggaatttaatgataattctgaaaaacatgattagattaaatacatcaaaaagcaattaataacttgtgttggtgtatatacttttgttgtaatcagacagaagaaaatacgttgggtatctaaagaattgtttcttattactatgtgaatgcaaaatacagtcttcatctattaaacttagcatcagttaaatagatccaacaaaaggtcctatagtcacaaaaaattttagatcagctaggatgacaagtcttgtatcctatcataactcttgtcataagacacataccttgtccgaaacgatattataactTGTTTAAA-C-ATTAT--AGAAATATTGAAAAAT-ATTTGTGTGAAA-TGCTTTCCA---AA--GTA-AA-T-C-AAA----CTCTAGT-A--AA-T--GGACAGCTATATG------------ATAaattgcaaaaaatacaggagtgtatgaaaagaataatgaactgccgattgtgctaattagaaaaaagtaagataattttatttttgagcagatactacttgtgaattgattgtatttctagaattagtgctgttcgtgatctttcgtgtggatgcttgtaagatagattaatgttgccataatataattagattcatgaagtatataaacataacaaca
gi|11 : G-TATCAA-TA-TCTTTTTTTT-CCCAC-----TATATACATGTATG-TTTACTG--T-GTA-TCATAAG---G---TATATATTGG--CTGTCGTG-T-GC-TA------TATT-ATTTACA------GTAC----TACTTTGATTGA-TTA-TAT--GAATG------CGTGTGATTGT----------------TAG---TGTAATGTC-ATA-TGTG-TAC-A-TTA-T--G--------T-----TTATA-T--AAATGT-CTAAAAATAAAAC---A--TAAAAAaaaaaaaaaaaaagaaatatatgttttttgatatttagtttgttgacaaactattttaacattcttaaggataaacatttattttttttttcttagagtatgtctttcttattattt
gi|12 : GG--CTGTCATG-T-GT-CAGGTGCTTGTTTAGTTACA--TGCA--------TGCTTC--TTAA-T-A-CAT--AAGAG------GGAGGGG----GAGGG------AT----GG---TGTAATGTC-ATA-TGTG-TAT-A-TTA-TGGG--------TATATAT-ATA-T--ATATGT-CTGAAAATAAAGCATTATTTAAAAAa
gi|13 : TATG------------ATAT-T---------GTGTACA-A--CA-A----------GTGA-TGA-AAAACCA-TGT------A--TA--TA----AA-GC-TATA-TC--AA-C-A-C-ATGT-ACATGCATG------TTAATTTA-----TGC-----T-TT-A--AAT--CAG-TATCA---A-TTTTTTCTCT-CTCAC-----TA------TATATG---TA-TG--T-ATA-TTATAAG---a
gi|14 : GTGTG------ACT-GTAG---TGTAATGTC-ATACTGCG-TAG-A-TTAAT--G--------T-----TTATA-T--AAATGT-CTAAAAAAAAAAC-TTA--TAAAAA
gi|15 : gtgGGAAATTT-TCTTTTATTGGTTGC-AAAAAAAAGTT-TATTT-ATTATT---CT-TGA-TCACAAGGCCTTAGGC-CAAAATTTTCAt
gi|16 : ------ATT-TGTG---TGTGATATC-ATG-TGTG-TAT-A-TT--T--A--------T-----T-GTA-T--AA-TGT-CTGAAAATAAAGCATTA---AAAA
gi|17 : AC-----TACAT------ATG-TTTACTG--T-GTA-TTATAAG---G---TATAT--TG
gi|2 : ttttaAAAGGAGTTTA-TAGCCCCAACTTTAAAAAAAAAAATAAGTGGGAAAACTTAT-TAGATGAATCCTTATCTGACAAAGACTGGGAATTT-ATTTTGTAAATGCTT-CGTTATGTACGAAGGATACAAAAATAATTTTATT-TTCAA-TAC-C-AAATA-CTGATGAACTAT-ATTG-TTACCAACTCCTT-TC-TT-CATAAAA-TTAAAATTTCAGATAATAA----TT--TGTG-T-ACTTTGT--AAATG---TGAAGC-AGAAACGA-TA-AC-TCA---CATA-TTT----TAC--GATT--GTG-TG--------CAA-GTCAA----CTTA---TTTTGG----ATGA---TTTT----G---T--GCAG-T-GG--TTTA---A--TG-C-AA-T--TGAAA---A-TGATTA---T-------AAG-ATA-T-CAAAAAAAAT-GTTTTACTTGGT-AACA-C-A--GAAGG-GAGC-TGTTT----AGAAAAATG-TCTTTTATTGGTTGC-AAAA---AGTTATTTAT-TTTATT---CT-AGA-TCACAAGGCCTTAGGC-CAAAATTTTCAGAGGCATTGAA-TTTATTCAAG-T-TTTAT--AGAAATATGGAAAATT-GC---TGTGAAA-AGGTATTCA---AAT-GTA-AA-TCC-GAA-ATGCT-TAGC-A--AA-T--GGGCAA-TATATG------------ATAT-T---------GTTTATA-A--CA-A----------GTGA-TGG-AAAACCA-TGT------A--TA--TA----GA-GC-TACA-TC--AA-CTA-C-ATGT-A----CATG------TTA----A-----TAC-----T-TT-G--AAT--CAG-TATCAA-TA-TCTTTTTTTT-CCCAC-----TACATG--TATATG-TTTACTG--T-GTA-TCATAAG---G---TATAT--TGG--CTGTCGTG-T-GC-TA------TATT-ATTTACATGTACAGTAC----TACTTTGATTGA-TTA-TAT--GAATG------TGTGTGGTTGTGTGTG------ATT-TTAG---TGTAATGTC-ATA-TGTG-TAT-A-TTA-T--G--------T-----T-ATA-T--AAATGT-CTAAAAATAAAACATTA---AAAAA
gi|3 : AT-ATTGCT-ACCAACTCCTT-TC-TTTCATAAAA-TTAAA-TTTC-GATAATAA----TT--TGTG-TGACTTTTTTTAAATG---TGAAGC-AGAA-CAA-TACAC-TCA---CATAATTT----CATTTAGTT--GTG-TG--------CAA-GTCAA-----TTA---TTGTGA----ATGA---TTTT----AGTCT--GCAG-T-GG--TTTA--CA--TG-C-AA-T--TGAAA---G-TC-TTG---TTCTTGAGAAG-ATAAT-CCAAAAATATTGTTTTACTTGGTTAACATC-ATTGAAGGGAAGC-TGTTTTTAAAAAAAATTTAGCTTTATTTGGTTGC-AAAA---AGTT-TATAT-TTTATTATTCT-AGA-TCACAAGGCCTTAGGCACAAAATTTTCAGCAGCAGTGAA-TTACTTCAAGCT-TTTAT--AG-AATATGGAAAATT-AC---TGGG--A-AGGTATTAA---AAT-GTA-AA-T-C-AAA-ATGCT-TAGCAA--AA-T--GTGGAA-TATATG------------ATAT-T---------GTA---A-A--CA-A----------GTGA-T-G-AAAACCATTGT------A--TA--TA----GA-ACTTACATTC--AA-ACA-CAATGT-A----CATG------TTA----A-----TAC-----TGTT-GA-AAT--CAG-TATC-A-TATTCTTTTTTTTCCCCAC-----TAGA-----ATGT--TTTACTG----GTT-TCATAAG---GGTATATAT--TAGGCCTGTCGTG-T-GCATA------TATT-AATTAT---CACAATAC----TACTTTGATGAG-TTA-TATTGGAATGGTGAAATGTATTGTTGTGTATG----------TTAGAAATGTAATGTCAATA-TATGTTACAA-TTA-T--G--------T-----T-TTA-TTAAAATGT-CTAAAAAAAAAACATT
gi|4 : cAACTAT-ATTGCTTACCAACTTCTT-TC-TT-C-TAAAA-T-AAATTCT-AGATAATAA----TT--TGTG-T-ACTTTTGT-AAATG---TGAAGCCAGAAACAA-TA-AAATCA---CATA-TTT----TAT--GTTT--GTGCTG--------CAA-ATCAA----TTTA---TTTTGA----ATGA---TTTT----G---TTTGCAG-T-GG--TTTA--TA--GG-C-AAAT--TGAAA---A-TTATTA---T-------AAG----------------T-GTTTAATT--GT-ACCA-CCA--GAAGG-AAGC-TGTTT----AGGAAATTT-TTCTTTATTGG-TGC-AAAA---AGTT-TATTTATTTATT---CT-AGATTCACAA-GCCTTA-GC-CAAAA-TTTCAGAGGCAGTGAATTTTATCAAAG-T-TTTAT--AGAAATAT-GAAAATTAACG--TGTGAAA-AGGCATTAATTTAAT-GTATAA-TCCAAAA-ATGCT-TAGC-A--AAGTGGGGGCAA-TAAATG------------ATCA-T---------ATGTATATA--CACA----------GTGA-TGGAAAAACCA-TGG------A--TA--TATTAGAA-GC-TACA-TTCAAA-CTA-C-ATGT-A----CATG------TTA----A-----TAC-----T-TT-GGAAAT--CAGCTATCAA-TATTCTTTTTTTT-TTCAA------ACATA--TATATGATTTACCG--TCGTATTCATAAGCGTA---TATAT--TGG--CTGTCGTGTT-GC-TA------TATT-ATTTACA--T---GTAC----TACTTTAATTGATTTATTAT--GAAAG------TG---------GTGTG------ATTGTTAG---TGTAATGTC-ATA-TGGA-TAC-ATTTA-T--A--------TG----T-ATACT--AAATGTACT-CAAATAAAACATTA--TAAAAAtattgaaaa
gi|5 : TAC-ATTGCTTAT-AACTCGTT-TCCTT-CACAAAACTTAAACTTGTAGAAAATGA----CAAATGTT-T-CTCTTGT--AAATGAG-TGAAG--AGAAACAA-TT-TC-TCA---TATA-TTT-----AT--GATA--TTG-T----------AATATCAC----CCTAGCCTTTTGG----G-GAGATTTTT----G---T--GAAA-TTGG-----AACCAGTTG-CTGA-T--TGAAA---AAGGATTA---T-------AAG-ATT-TTCGAAAAGAATTGTATTACTTGGA-AATG-T-T--AATGG-AAGCTTGTT--------ATATTT-TTTCTTTCT-ATAGCAAAAA---AGCA-TATAT-ATTATG---CCAAGA-TC-CAAGG--TTTGAC-C-AAATTTTTAT-GCCATTAAA-TTTGTTTAAA-CATATAT--AGAAATATTGAAAAA--AT---TGT-AAA-TGCTTTCCA---AA--G-A-AA-TCC-AAA-ACTCC-TAGT-A--AA-T--G
gi|6 : -T-TTTATCTAGAA-TA---AAAGTT-AC---CATGAAA-AGGTATTTA---AAT-GTA-AA-ACC-AAA-ATGCT-TAGC-A--AA-T--GGGCAAATATATG------------ATAT-T---------GTATATA-AAACA-A----------GTGAATGG-AAAACGA-TGT------A--TA--TA----GATGC-TACA-TC--AA-CAA-C-ATGT-A----CATG------TTAT---A-----AAC-----T-TTTG--AAT--CAG-TATCAA-TA-TCTTTTTTT---CCAC-----TA------TATATG-TTTACTG--T-GTA-TCATAAG---G---TATAT--TGG--CTGTCGTG-TTGC-TA------TATT-ATTTACA------GTAC----TACTTTGATTGA-TTA-TAT--GAATG------TGTGTGGTTGTGTGTG------ATTGTTAG---TGTAATGTC-ATA-TGCG-TAT-ATTTA-T-----------T-----T-ATA-T--AAATGT-CTGAAAATAAAACATTA--TAAAAAacactattatacttaacgttttgatatttagtttgtagaaaacctatttaac
gi|7 : ttt------A--TA--TA----------TACA-TC--AA-CTA-C-ATGT-A----CATACATGTTTTA----AATTTATAC-----T-TT-G--AAT--CAG-TATCAA-T------TTCGTT-CTCAC-----TA------TATATG-TTT---G--T-ATA-TTATAAG---G---CATAT--TAA--CTGTCCCG-T-GC-TA------TATT-ATTTACAGTCATAATAAATTGTACTTTGATTGA-TTA-TAT--GAATG------TGTATGATTGTGTGTGTATGTAATTGTTAG---TGTAATGTC-ATA-TGTG-TAT-A-TCA-T--G--------TGTA--T-ATA-T--AAATGT-CTGAAAATAAAGCATTA--a
gi|8 : cGT------A--TA--TA----GA-GC-TACA-TC--AA-CTA-C-ATGT-A----CATG------TTA----A-----TAC-----T-TT-G--AAT--CAG-TATCAA-T----TTTTTTTT-TCCAC-----TA------TATATG-TTTAGTG--T-GTA-TCATAAG---G---TATAT--TGG--CTGTCGTG-T-GC-TA------TATT-ATT------TACAGTAC----TA---TGATTGA-TTA-TAT--GAATG------TGTGTGATTG----------------TTAG---TGTAATGTC-ATA-TGTG-TAT-A-TTA-T--GTTTTAAAAT-----T-ATA-T--AAATGT-CTAAAAATAAAACATTA--TAAAAAaa
gi|9 : CTTCTGTTAGCTTC-GAA-----GTT-TATAT-GTTATT---CC-AGA-TCACAAGGCCCTAAGT-CATT-TTTTCTGAGGCAGTGA--TTTATCTAAG-T-GACAC--AGAAATATGGAAAAAT-AC---TTTGTAA-ATGTGTTCC---ATT-CTA-AAGCCC-AAATATGTA-TGGC-AAGAA-T----GCAA-TTTACG-------------TAT-TTTTATGTACGTGTATA-A--AA-AT---------GTGA-TGA-AAAACCA-
Alignments
lowQualScore : 1 1 2222 1 1 11 1 1 1 1 1 1 222 1 1 111 11111111 11 222 111 22222 11 11 22222222 22222 1111 1111 111 22222222222 111 222222 11 11111 33333333333 222222222 11111 1 2222222 1 1 22222 111 111 111 1 222222222222 222222222 3333333333 111111 11111 1111 111111 1111111111 11111 1111 11 11111 333333 111111 22222222 1111 111111 2222222222 33333333333333333
lowQualScore : 5 5 1 4444 5 5 88 5 5 5 5 5 5 000 5 8 11 8 6 333 8 3 8 99 0 88888888 8 8 88 555 0 8 0 8 8 8 444 8 33333 11 11 8 99999999 8 55555 4444 7777 0 444 66666666666 5 8 8 111 666666 999 8 11 66666 0 11111111111 111111111 22222 3 0 7777777 0 0 44444 1 8 1 1 1 6 111 6 77 111 6 6 1 6 7 5 0 8 0 666 77 7 1 5 333 0 5 0 888 88 5 777 5 5 5 5 66 5 66 1 555555555555 5 222222222 00 5 77 5 0000000000 5 5 5 444444 66 66 00000 5 5 5 66 5 2 5 5 5 0000 444444 9999999999 22222 5 3333 66 8 4 00 4 00000 999999 4 55 4 4 777 888 66 66 5 5 5 444444 5 77777777 0000 5 5 66 444444 0 0 3 7777777777 777 4 4 4 4 8 4 00000000000000000 8 4 55 4 3 0 999
lowQualScore : . . . .... . . .. . . . . . . ... . . .. . . ... . . . .. . ........ . . .. ... . . . . . . ... . ..... .. .. . ........ . ..... .... .... . ... ........... . . . ... ...... ... . .. ..... . ........... ......... ..... . . ....... . . ..... . . . . . . ... . .. ... . . . . . . . . . ... .. . . . ... . . . ... .. . ... . . . . .. . .. . ............ . ......... .. . .. . .......... . . . ...... .. .. ..... . . . .. . . . . . .... ...... .......... ..... . .... .. . . .. . ..... ...... . .. . . ... ... .. .. . . . ...... . ........ .... . . .. ...... . . . .......... ... . . . . . . ................. . . .. . . . ...
lowQualScore : 5 0 0 5555 5 5 55 5 0 5 5 5 5 000 5 0 66 0 0 666 0 8 2 22 8 22222222 0 0 66 000 8 0 8 0 0 0 000 0 44444 00 00 0 00000000 0 22222 8888 0000 8 000 22222222222 0 0 0 888 222222 222 0 00 00000 8 00000000000 888888888 22222 2 0 2222222 0 0 55555 4 0 0 0 7 7 777 7 77 777 7 7 0 7 3 6 8 0 3 777 99 9 0 7 888 4 0 2 888 22 0 555 0 0 0 0 99 0 99 4 666666666666 7 999999999 66 7 99 7 7777777777 7 7 7 444444 99 99 99999 0 0 0 99 0 2 0 0 0 6666 444444 1111111111 55555 0 9999 99 9 4 88 4 00000 222222 0 55 0 0 888 888 99 99 0 0 0 444444 0 55555555 6666 0 0 99 444444 4 1 1 0000000000 000 0 0 0 0 0 0 22222222222222222 0 0 55 0 0 8 444
consensus : AAAGGAGTTTAATAGCCCCAACTTTAAAANAAAAAATAAGTGGGAAAACTTATATAGATGAATCCTTATCTGACAAAGACTGGGAATTTTATTTTGTAAATGCTTTCGTTATGTACGAAGGATACAAAAATAATTTTATTATTCAAATACGCGAAATATCTGATGAACTAT-ATTGCTTACCAACTCCTT-TC-TT-CATAAAA-TTAAACTTTCAGATAATAA----TT--TGTG-T-ACTTTGTT-AAATG---TGAAGC-AGAAACAA-TA-AC-TCA---CATA-TTT----CAT--GATT--GTG-TG--------CAA-ATCAA----CTTA---TTTTGG----ATGA---TTTT----G---T--GCAG-T-GG--TTTA--CA--TG-C-AA-T--TGAAA---A-TGATTA---T-------AAG-ATA-T-CGAAAAG-AATTGTTTTACTTGGT-AACG-C-A--GAAGG-AAGC-TGTTT----AGGAAATTT-TCTTTTNTTGGTTGC-AAAA---AGTT-TATAT-NTTATT---CT-AGA-TCACAAGGCCTTAGGC-CAAAATTTTCAGAGGCAGTGAA-TTTATTTAAG-T-TTTAT--AGAAATATGGAAAANT-AC---TGTGAAA-AGGTATTCA---AAT-GTA-AA-TCC-AAA-ATGCT-TAGC-A--AA-T--GGGCAA-TATATG------------ATAT-T---------GTGTATA-A--CA-A----------GTGA-TGG-AAAACCA-TGT------A--TA--TA----GA-GC-TACA-TC--AA-CTA-C-ATGT-A----CATG------TTA----A-----TAC-----T-TT-G--AAT--CAG-TATCAA-TA-TCTTTTTTTT-CCCAC-----TACAT---TATATG-TTTACTG--T-GTA-TCATAAG---G---TATAT--TGG--CTGTCGTG-T-GC-TA------TATT-ATTTACA--TACAGTAC----TACTTTGATTGA-TTA-TAT--GAATG------TGTGTGGTTGTGTGTG------ATT-TTAG---TGTAATGTC-ATA-TGTG-TAT-A-TTA-T--G--------T-----T-ATA-T--AAATGT-CTGAAAATAAAACATTA--TAAAAA
Reference ( family-829 ) : AAAGGAGTTTAATAGCCCCAACTTTAAAANAAAAAATAAGTGGGAAAACTTATATAGATGAATCCTTATCTGACAAAGACTGGGAATTTTATTTTGTAAATGCTTTCGTTATGTACGAAGGATACAAAAATAATTTTATTATTCAAATACGCGAAATATCTGATGAACTAT-ATTGCTTACCAACTCCTT-TC-TT-CATAAAA-TTAAACTTTCAGATAATAA----TT--TGTG-T-ACTTTGTT-AAATG---TGAAGC-AGAAACAA-TA-AC-TCA---CATA-TTT----CAT--GATT--GTG-TG--------CAA-ATCAA----CTTA---TTTTGG----ATGA---TTTT----G---T--GCAG-T-GG--TTTA--CA--TG-C-AA-T--TGAAA---A-TGATTA---T-------AAG-ATA-T-CGAAAAA-AATTGTTTTACTTGGT-AACG-C-A--GAAGG-AAGC-TGTTT----AGGAAATTT-TCTTTTNTTGGTTGC-AAAA---AGTT-TATAT-NTTATT---CT-AGA-TCACAAGGCCTTAGGC-CAAAATTTTCAGAGGCAGTGAA-TTTATTTAAG-T-TTTAT--AGAAATATGGAAAANT-AC---TGTGAAA-AGGTATTCA---AAT-GTA-AA-TCC-AAA-ATGCT-TAGC-A--AA-T--GGGCAA-TATATG------------ATAT-T---------GTGTATA-A--CA-A----------GTGA-TGG-AAAACCA-TGT------A--TA--TA----GA-GC-TACA-TC--AA-CTA-C-ATGT-A----CATG------TTA----A-----TAC-----T-TT-G--AAT--CAG-TATCAA-TA-TCTTTTTTTT-CCCAC-----TACAT---TATATG-TTTACTG--T-GTA-TCATAAG---G---TATAT--TGG--CTGTCGTG-T-GC-TA------TATT-ATTTACA--TACAGTAC----TACTTTGATTGA-TTA-TAT--GAATG------TGTGTGGTTGTGTGTG------ATT-TTAG---TGTAATGTC-ATA-TGTG-TAT-A-TTA-T--G--------T-----T-ATA-T--AAATGT-CTGAAAATAAAACATTA--TAAAAA
gi|1 : AAAGGAGTTTAATAGCCCCAA-TTTAAAACAAAAA----GTGGGAAA-CTTATATAGATAA--CCTTATCTGACAAAGACTGGAAATTTTATTTT-TAAATGTTTTCGTTATGTACGAAGGATACAAAAATAATTT-ATTATTCAAATACGCGAAATATCTGATGAACTATAATTGC-TACCAACTCCTTATCATT---TAAAA-TCAAACTTTCTGATAG-AAGATTTT--TGTGTT-ACTTTGTT-ACACATCCTG-AGC-AGAAACAATTA-AC-TTGTACCATA-CTTCTCACAT--GATTTGATG-TGGGATAGGTCCA-ATCAAGAGTGTTA----TTTGGAGATATGA---CTTTATAGG---T--G-AGCT-GGAATTTA---A--TGAT-AA-TTCTGAAAAACA-TGATTAGATT-------AAATACA-T-CAAAAAGCAATT
gi|1 : ga---TGTCAAAGAGGTATTTA---AATTGTA-AA-CTC-CAA-ATGCT-TAGC-A--A--T--GGTCAA-TATATGCACTAGGTTTAGATATAT---------GGACCTA-A--CA-AACACTCGAAAGTG---GG-AAAACCA-TGTTGTGCTAGTTACTTA----GA-GC-TACA-TG--AAGCTAGC-ATGTTA----CAT--------TA----A-----CACATTGGT-TTAG--AATTACAGATATTAAATA-TC-TTTTTTT-CCCACTAATATACATG--TAT-TG-TTTACTGGAT-GTA-aataacttgtgttggtgtatatacttttgttgtaatcagacagaagaaaatacgttgggtatctaaagaattgtttcttattactatgtgaatgcaaaatacagtcttcatctattaaacttagcatcagttaaatagatccaacaaaaggtcctatagtcacaaaaaattttagatcagctaggatgacaagtcttgtatcctatcataactcttgtcataagacacataccttgtccgaaacgatattataacttgtcaaagaggtatttaaattgtaaactccaaatgcttagcaatggtcaatatatgcactaggtttagatatatggacctaacaaacactcgaaagtgggaaaaccatgttgtgctagttacttagagctacatgaagctagcatgttacattaacacattggtttagaattacagatattaaatatctttttttcccactaatatacatgtattgtttactggatgtaaattgcaaaaaatacaggagtgtatgaaaagaataatgaactgccgattgtgctaattagaaaaaagtaagataattttatttttgagcagatactacttgtgaattgattgtatttctagaattagtgctgttcgtgatctttcgtgtggatgcttgtaagatagattaatgttgccataatataattagattcatgaagtatataaacataacaaca
gi|10 : gaaaaggagtttaatagccccaatttaaaacaaaaagtgggaaacttatatagataaccttatctgacaaagactggaaattttatttttaaatgttttcgttatgtacgaaggatacaaaaataatttattattcaaatacgcgaaatatctgatgaactataattgctaccaactccttatcatttaaaatcaaactttctgatagaagatttttgtgttactttgttacacatcctgagcagaaacaattaacttgtaccatacttctcacatgatttgatgtgggataggtccaatcaagagtgttatttggagatatgactttataggtgagctggaatttaatgataattctgaaaaacatgattagattaaatacatcaaaaagcaattaataacttgtgttggtgtatatacttttgttgtaatcagacagaagaaaatacgttgggtatctaaagaattgtttcttattactatgtgaatgcaaaatacagtcttcatctattaaacttagcatcagttaaatagatccaacaaaaggtcctatagtcacaaaaaattttagatcagctaggatgacaagtcttgtatcctatcataactcttgtcataagacacataccttgtccgaaacgatattataactTGTTTAAA-C-ATTAT--AGAAATATTGAAAAAT-ATTTGTGTGAAA-TGCTTTCCA---AA--GTA-AA-T-C-AAA----CTCTAGT-A--AA-T--GGACAGCTATATG------------ATAaattgcaaaaaatacaggagtgtatgaaaagaataatgaactgccgattgtgctaattagaaaaaagtaagataattttatttttgagcagatactacttgtgaattgattgtatttctagaattagtgctgttcgtgatctttcgtgtggatgcttgtaagatagattaatgttgccataatataattagattcatgaagtatataaacataacaaca
gi|11 : G-TATCAA-TA-TCTTTTTTTT-CCCAC-----TATATACATGTATG-TTTACTG--T-GTA-TCATAAG---G---TATATATTGG--CTGTCGTG-T-GC-TA------TATT-ATTTACA------GTAC----TACTTTGATTGA-TTA-TAT--GAATG------CGTGTGATTGT----------------TAG---TGTAATGTC-ATA-TGTG-TAC-A-TTA-T--G--------T-----TTATA-T--AAATGT-CTAAAAATAAAAC---A--TAAAAAaaaaaaaaaaaaagaaatatatgttttttgatatttagtttgttgacaaactattttaacattcttaaggataaacatttattttttttttcttagagtatgtctttcttattattt
gi|12 : GG--CTGTCATG-T-GT-CAGGTGCTTGTTTAGTTACA--TGCA--------TGCTTC--TTAA-T-A-CAT--AAGAG------GGAGGGG----GAGGG------AT----GG---TGTAATGTC-ATA-TGTG-TAT-A-TTA-TGGG--------TATATAT-ATA-T--ATATGT-CTGAAAATAAAGCATTATTTAAAAAa
gi|13 : TATG------------ATAT-T---------GTGTACA-A--CA-A----------GTGA-TGA-AAAACCA-TGT------A--TA--TA----AA-GC-TATA-TC--AA-C-A-C-ATGT-ACATGCATG------TTAATTTA-----TGC-----T-TT-A--AAT--CAG-TATCA---A-TTTTTTCTCT-CTCAC-----TA------TATATG---TA-TG--T-ATA-TTATAAG---a
gi|14 : GTGTG------ACT-GTAG---TGTAATGTC-ATACTGCG-TAG-A-TTAAT--G--------T-----TTATA-T--AAATGT-CTAAAAAAAAAAC-TTA--TAAAAA
gi|15 : gtgGGAAATTT-TCTTTTATTGGTTGC-AAAAAAAAGTT-TATTT-ATTATT---CT-TGA-TCACAAGGCCTTAGGC-CAAAATTTTCAt
gi|16 : ------ATT-TGTG---TGTGATATC-ATG-TGTG-TAT-A-TT--T--A--------T-----T-GTA-T--AA-TGT-CTGAAAATAAAGCATTA---AAAA
gi|17 : AC-----TACAT------ATG-TTTACTG--T-GTA-TTATAAG---G---TATAT--TG
gi|2 : ttttaAAAGGAGTTTA-TAGCCCCAACTTTAAAAAAAAAAATAAGTGGGAAAACTTAT-TAGATGAATCCTTATCTGACAAAGACTGGGAATTT-ATTTTGTAAATGCTT-CGTTATGTACGAAGGATACAAAAATAATTTTATT-TTCAA-TAC-C-AAATA-CTGATGAACTAT-ATTG-TTACCAACTCCTT-TC-TT-CATAAAA-TTAAAATTTCAGATAATAA----TT--TGTG-T-ACTTTGT--AAATG---TGAAGC-AGAAACGA-TA-AC-TCA---CATA-TTT----TAC--GATT--GTG-TG--------CAA-GTCAA----CTTA---TTTTGG----ATGA---TTTT----G---T--GCAG-T-GG--TTTA---A--TG-C-AA-T--TGAAA---A-TGATTA---T-------AAG-ATA-T-CAAAAAA-AA-TGTTTTACTTGGT-AACA-C-A--GAAGG-GAGC-TGTTT----AGAAAAATG-TCTTTTATTGGTTGC-AAAA---AGTTATTTAT-TTTATT---CT-AGA-TCACAAGGCCTTAGGC-CAAAATTTTCAGAGGCATTGAA-TTTATTCAAG-T-TTTAT--AGAAATATGGAAAATT-GC---TGTGAAA-AGGTATTCA---AAT-GTA-AA-TCC-GAA-ATGCT-TAGC-A--AA-T--GGGCAA-TATATG------------ATAT-T---------GTTTATA-A--CA-A----------GTGA-TGG-AAAACCA-TGT------A--TA--TA----GA-GC-TACA-TC--AA-CTA-C-ATGT-A----CATG------TTA----A-----TAC-----T-TT-G--AAT--CAG-TATCAA-TA-TCTTTTTTTT-CCCAC-----TACATG--TATATG-TTTACTG--T-GTA-TCATAAG---G---TATAT--TGG--CTGTCGTG-T-GC-TA------TATT-ATTTACATGTACAGTAC----TACTTTGATTGA-TTA-TAT--GAATG------TGTGTGGTTGTGTGTG------ATT-TTAG---TGTAATGTC-ATA-TGTG-TAT-A-TTA-T--G--------T-----T-ATA-T--AAATGT-CTAAAAATAAAACATTA---AAAAA
gi|3 : AT-ATTGCT-ACCAACTCCTT-TC-TTTCATAAAA-TTAAA-TTTC-GATAATAA----TT--TGTG-TGACTTTTTTTAAATG---TGAAGC-AGAA-CAA-TACAC-TCA---CATAATTT----CATTTAGTT--GTG-TG--------CAA-GTCAA-----TTA---TTGTGA----ATGA---TTTT----AGTCT--GCAG-T-GG--TTTA--CA--TG-C-AA-T--TGAAA---G-TC-TTG---TTCTTGAGAAG-ATAAT-CCAAAAA-TATTGTTTTACTTGGTTAACATC-ATTGAAGGGAAGC-TGTTTTTAAAAAAAATTTAGCTTTATTTGGTTGC-AAAA---AGTT-TATAT-TTTATTATTCT-AGA-TCACAAGGCCTTAGGCACAAAATTTTCAGCAGCAGTGAA-TTACTTCAAGCT-TTTAT--AG-AATATGGAAAATT-AC---TGGG--A-AGGTATTAA---AAT-GTA-AA-T-C-AAA-ATGCT-TAGCAA--AA-T--GTGGAA-TATATG------------ATAT-T---------GTA---A-A--CA-A----------GTGA-T-G-AAAACCATTGT------A--TA--TA----GA-ACTTACATTC--AA-ACA-CAATGT-A----CATG------TTA----A-----TAC-----TGTT-GA-AAT--CAG-TATC-A-TATTCTTTTTTTTCCCCAC-----TAGA-----ATGT--TTTACTG----GTT-TCATAAG---GGTATATAT--TAGGCCTGTCGTG-T-GCATA------TATT-AATTAT---CACAATAC----TACTTTGATGAG-TTA-TATTGGAATGGTGAAATGTATTGTTGTGTATG----------TTAGAAATGTAATGTCAATA-TATGTTACAA-TTA-T--G--------T-----T-TTA-TTAAAATGT-CTAAAAAAAAAACATT
gi|4 : cAACTAT-ATTGCTTACCAACTTCTT-TC-TT-C-TAAAA-T-AAATTCT-AGATAATAA----TT--TGTG-T-ACTTTTGT-AAATG---TGAAGCCAGAAACAA-TA-AAATCA---CATA-TTT----TAT--GTTT--GTGCTG--------CAA-ATCAA----TTTA---TTTTGA----ATGA---TTTT----G---TTTGCAG-T-GG--TTTA--TA--GG-C-AAAT--TGAAA---A-TTATTA---T-------AAG------------------TGTTTAATT--GT-ACCA-CCA--GAAGG-AAGC-TGTTT----AGGAAATTT-TTCTTTATTGG-TGC-AAAA---AGTT-TATTTATTTATT---CT-AGATTCACAA-GCCTTA-GC-CAAAA-TTTCAGAGGCAGTGAATTTTATCAAAG-T-TTTAT--AGAAATAT-GAAAATTAACG--TGTGAAA-AGGCATTAATTTAAT-GTATAA-TCCAAAA-ATGCT-TAGC-A--AAGTGGGGGCAA-TAAATG------------ATCA-T---------ATGTATATA--CACA----------GTGA-TGGAAAAACCA-TGG------A--TA--TATTAGAA-GC-TACA-TTCAAA-CTA-C-ATGT-A----CATG------TTA----A-----TAC-----T-TT-GGAAAT--CAGCTATCAA-TATTCTTTTTTTT-TTCAA------ACATA--TATATGATTTACCG--TCGTATTCATAAGCGTA---TATAT--TGG--CTGTCGTGTT-GC-TA------TATT-ATTTACA--T---GTAC----TACTTTAATTGATTTATTAT--GAAAG------TG---------GTGTG------ATTGTTAG---TGTAATGTC-ATA-TGGA-TAC-ATTTA-T--A--------TG----T-ATACT--AAATGTACT-CAAATAAAACATTA--TAAAAAtattgaaaa
gi|5 : TAC-ATTGCTTAT-AACTCGTT-TCCTT-CACAAAACTTAAACTTGTAGAAAATGA----CAAATGTT-T-CTCTTGT--AAATGAG-TGAAG--AGAAACAA-TT-TC-TCA---TATA-TTT-----AT--GATA--TTG-T----------AATATCAC----CCTAGCCTTTTGG----G-GAGATTTTT----G---T--GAAA-TTGG-----AACCAGTTG-CTGA-T--TGAAA---AAGGATTA---T-------AAG-ATT-TTCGAAAAG-AATTGTATTACTTGGA-AATG-T-T--AATGG-AAGCTTGTT--------ATATTT-TTTCTTTCT-ATAGCAAAAA---AGCA-TATAT-ATTATG---CCAAGA-TC-CAAGG--TTTGAC-C-AAATTTTTAT-GCCATTAAA-TTTGTTTAAA-CATATAT--AGAAATATTGAAAAA--AT---TGT-AAA-TGCTTTCCA---AA--G-A-AA-TCC-AAA-ACTCC-TAGT-A--AA-T--G
gi|6 : -T-TTTATCTAGAA-TA---AAAGTT-AC---CATGAAA-AGGTATTTA---AAT-GTA-AA-ACC-AAA-ATGCT-TAGC-A--AA-T--GGGCAAATATATG------------ATAT-T---------GTATATA-AAACA-A----------GTGAATGG-AAAACGA-TGT------A--TA--TA----GATGC-TACA-TC--AA-CAA-C-ATGT-A----CATG------TTAT---A-----AAC-----T-TTTG--AAT--CAG-TATCAA-TA-TCTTTTTTT---CCAC-----TA------TATATG-TTTACTG--T-GTA-TCATAAG---G---TATAT--TGG--CTGTCGTG-TTGC-TA------TATT-ATTTACA------GTAC----TACTTTGATTGA-TTA-TAT--GAATG------TGTGTGGTTGTGTGTG------ATTGTTAG---TGTAATGTC-ATA-TGCG-TAT-ATTTA-T-----------T-----T-ATA-T--AAATGT-CTGAAAATAAAACATTA--TAAAAAacactattatacttaacgttttgatatttagtttgtagaaaacctatttaac
gi|7 : ttt------A--TA--TA----------TACA-TC--AA-CTA-C-ATGT-A----CATACATGTTTTA----AATTTATAC-----T-TT-G--AAT--CAG-TATCAA-T------TTCGTT-CTCAC-----TA------TATATG-TTT---G--T-ATA-TTATAAG---G---CATAT--TAA--CTGTCCCG-T-GC-TA------TATT-ATTTACAGTCATAATAAATTGTACTTTGATTGA-TTA-TAT--GAATG------TGTATGATTGTGTGTGTATGTAATTGTTAG---TGTAATGTC-ATA-TGTG-TAT-A-TCA-T--G--------TGTA--T-ATA-T--AAATGT-CTGAAAATAAAGCATTA--a
gi|8 : cGT------A--TA--TA----GA-GC-TACA-TC--AA-CTA-C-ATGT-A----CATG------TTA----A-----TAC-----T-TT-G--AAT--CAG-TATCAA-T----TTTTTTTT-TCCAC-----TA------TATATG-TTTAGTG--T-GTA-TCATAAG---G---TATAT--TGG--CTGTCGTG-T-GC-TA------TATT-ATT------TACAGTAC----TA---TGATTGA-TTA-TAT--GAATG------TGTGTGATTG----------------TTAG---TGTAATGTC-ATA-TGTG-TAT-A-TTA-T--GTTTTAAAAT-----T-ATA-T--AAATGT-CTAAAAATAAAACATTA--TAAAAAaa
gi|9 : CTTCTGTTAGCTTC-GAA-----GTT-TATAT-GTTATT---CC-AGA-TCACAAGGCCCTAAGT-C-ATTTTTTCTGAGGCAGTG-A-TTTATCTAAG-T-GACAC--AGAAATATGGAAAAAT-AC---TTTGTAA-ATGTGTTCC---ATT-CTA-AAGCCC-AAATATGTA-TGGC-AAGAA-T----GCAA-TTTACG-------------TAT-TTTTATGTACGTGTATA-A--AA-AT---------GTGA-TGA-AAAACCA-
Alignments
lowQualScore : 1 1 2222 1 1 11 1 1 1 1 1 1 222 1 1 111 11111111 11 222 111 22222 11 11 22222222 22222 1111 1111 111 22222222222 111 222222 11 11111 33333333333 222222222 11111 1 2222222 1 1 22222 111 111 111 1 222222222222 222222222 3333333333 111111 11111 1111 111111 1111111111 11111 1111 11 11111 333333 111111 22222222 1111 111111 2222222222 33333333333333333
lowQualScore : 5 5 1 4444 5 5 88 5 5 5 5 5 5 000 5 8 11 8 6 333 8 3 8 99 0 88888888 8 8 88 555 0 8 0 8 8 8 444 8 33333 11 11 8 99999999 8 55555 4444 7777 0 444 66666666666 5 8 8 111 666666 999 8 11 66666 0 11111111111 111111111 11111 3 0 7777777 0 0 44444 1 8 1 1 1 6 111 6 77 111 6 6 1 6 7 5 0 8 0 666 77 7 1 5 333 0 5 0 888 88 5 777 5 5 5 5 66 5 66 1 555555555555 5 222222222 00 5 77 5 0000000000 5 5 5 444444 66 66 00000 5 5 5 66 5 2 5 5 5 0000 444444 9999999999 22222 5 3333 66 8 4 00 4 00000 999999 4 55 4 4 777 888 66 66 5 5 5 444444 5 77777777 0000 5 5 66 444444 0 0 3 7777777777 777 4 4 4 4 8 4 00000000000000000 8 4 55 4 3 0 999
lowQualScore : . . . .... . . .. . . . . . . ... . . .. . . ... . . . .. . ........ . . .. ... . . . . . . ... . ..... .. .. . ........ . ..... .... .... . ... ........... . . . ... ...... ... . .. ..... . ........... ......... ..... . . ....... . . ..... . . . . . . ... . .. ... . . . . . . . . . ... .. . . . ... . . . ... .. . ... . . . . .. . .. . ............ . ......... .. . .. . .......... . . . ...... .. .. ..... . . . .. . . . . . .... ...... .......... ..... . .... .. . . .. . ..... ...... . .. . . ... ... .. .. . . . ...... . ........ .... . . .. ...... . . . .......... ... . . . . . . ................. . . .. . . . ...
lowQualScore : 5 0 0 5555 5 5 55 5 0 5 5 5 5 000 5 0 66 0 0 666 0 8 2 22 8 22222222 0 0 66 000 8 0 8 0 0 0 000 0 44444 00 00 0 00000000 0 22222 8888 0000 8 000 22222222222 0 0 0 888 222222 222 0 00 00000 8 00000000000 888888888 88888 2 0 2222222 0 0 55555 4 0 0 0 7 7 777 7 77 777 7 7 0 7 3 6 8 0 3 777 99 9 0 7 888 4 0 2 888 22 0 555 0 0 0 0 99 0 99 4 666666666666 7 999999999 66 7 99 7 7777777777 7 7 7 444444 99 99 99999 0 0 0 99 0 2 0 0 0 6666 444444 1111111111 55555 0 9999 99 9 4 88 4 00000 222222 0 55 0 0 888 888 99 99 0 0 0 444444 0 55555555 6666 0 0 99 444444 4 1 1 0000000000 000 0 0 0 0 0 0 22222222222222222 0 0 55 0 0 8 444
consensus : AAAGGAGTTTAATAGCCCCAACTTTAAAANAAAAAATAAGTGGGAAAACTTATATAGATGAATCCTTATCTGACAAAGACTGGGAATTTTATTTTGTAAATGCTTTCGTTATGTACGAAGGATACAAAAATAATTTTATTATTCAAATACGCGAAATATCTGATGAACTAT-ATTGCTTACCAACTCCTT-TC-TT-CATAAAA-TTAAACTTTCAGATAATAA----TT--TGTG-T-ACTTTGTT-AAATG---TGAAGC-AGAAACAA-TA-AC-TCA---CATA-TTT----CAT--GATT--GTG-TG--------CAA-ATCAA----CTTA---TTTTGG----ATGA---TTTT----G---T--GCAG-T-GG--TTTA--CA--TG-C-AA-T--TGAAA---A-TGATTA---T-------AAG-ATA-T-CGAAAAG-AATTGTTTTACTTGGT-AACG-C-A--GAAGG-AAGC-TGTTT----AGGAAATTT-TCTTTTNTTGGTTGC-AAAA---AGTT-TATAT-NTTATT---CT-AGA-TCACAAGGCCTTAGGC-CAAAATTTTCAGAGGCAGTGAA-TTTATTTAAG-T-TTTAT--AGAAATATGGAAAANT-AC---TGTGAAA-AGGTATTCA---AAT-GTA-AA-TCC-AAA-ATGCT-TAGC-A--AA-T--GGGCAA-TATATG------------ATAT-T---------GTGTATA-A--CA-A----------GTGA-TGG-AAAACCA-TGT------A--TA--TA----GA-GC-TACA-TC--AA-CTA-C-ATGT-A----CATG------TTA----A-----TAC-----T-TT-G--AAT--CAG-TATCAA-TA-TCTTTTTTTT-CCCAC-----TACAT---TATATG-TTTACTG--T-GTA-TCATAAG---G---TATAT--TGG--CTGTCGTG-T-GC-TA------TATT-ATTTACA--TACAGTAC----TACTTTGATTGA-TTA-TAT--GAATG------TGTGTGGTTGTGTGTG------ATT-TTAG---TGTAATGTC-ATA-TGTG-TAT-A-TTA-T--G--------T-----T-ATA-T--AAATGT-CTGAAAATAAAACATTA--TAAAAA
Reference ( family-829 ) : AAAGGAGTTTAATAGCCCCAACTTTAAAANAAAAAATAAGTGGGAAAACTTATATAGATGAATCCTTATCTGACAAAGACTGGGAATTTTATTTTGTAAATGCTTTCGTTATGTACGAAGGATACAAAAATAATTTTATTATTCAAATACGCGAAATATCTGATGAACTAT-ATTGCTTACCAACTCCTT-TC-TT-CATAAAA-TTAAACTTTCAGATAATAA----TT--TGTG-T-ACTTTGTT-AAATG---TGAAGC-AGAAACAA-TA-AC-TCA---CATA-TTT----CAT--GATT--GTG-TG--------CAA-ATCAA----CTTA---TTTTGG----ATGA---TTTT----G---T--GCAG-T-GG--TTTA--CA--TG-C-AA-T--TGAAA---A-TGATTA---T-------AAG-ATA-T-CGAAAAG-AATTGTTTTACTTGGT-AACG-C-A--GAAGG-AAGC-TGTTT----AGGAAATTT-TCTTTTNTTGGTTGC-AAAA---AGTT-TATAT-NTTATT---CT-AGA-TCACAAGGCCTTAGGC-CAAAATTTTCAGAGGCAGTGAA-TTTATTTAAG-T-TTTAT--AGAAATATGGAAAANT-AC---TGTGAAA-AGGTATTCA---AAT-GTA-AA-TCC-AAA-ATGCT-TAGC-A--AA-T--GGGCAA-TATATG------------ATAT-T---------GTGTATA-A--CA-A----------GTGA-TGG-AAAACCA-TGT------A--TA--TA----GA-GC-TACA-TC--AA-CTA-C-ATGT-A----CATG------TTA----A-----TAC-----T-TT-G--AAT--CAG-TATCAA-TA-TCTTTTTTTT-CCCAC-----TACAT---TATATG-TTTACTG--T-GTA-TCATAAG---G---TATAT--TGG--CTGTCGTG-T-GC-TA------TATT-ATTTACA--TACAGTAC----TACTTTGATTGA-TTA-TAT--GAATG------TGTGTGGTTGTGTGTG------ATT-TTAG---TGTAATGTC-ATA-TGTG-TAT-A-TTA-T--G--------T-----T-ATA-T--AAATGT-CTGAAAATAAAACATTA--TAAAAA
gi|1 : AAAGGAGTTTAATAGCCCCAA-TTTAAAACAAAAA----GTGGGAAA-CTTATATAGATAA--CCTTATCTGACAAAGACTGGAAATTTTATTTT-TAAATGTTTTCGTTATGTACGAAGGATACAAAAATAATTT-ATTATTCAAATACGCGAAATATCTGATGAACTATAATTGC-TACCAACTCCTTATCATT---TAAAA-TCAAACTTTCTGATAG-AAGATTTT--TGTGTT-ACTTTGTT-ACACATCCTG-AGC-AGAAACAATTA-AC-TTGTACCATA-CTTCTCACAT--GATTTGATG-TGGGATAGGTCCA-ATCAAGAGTGTTA----TTTGGAGATATGA---CTTTATAGG---T--G-AGCT-GGAATTTA---A--TGAT-AA-TTCTGAAAAACA-TGATTAGATT-------AAATACA-T-CAAAAAGCAATT
gi|1 : ga---TGTCAAAGAGGTATTTA---AATTGTA-AA-CTC-CAA-ATGCT-TAGC-A--A--T--GGTCAA-TATATGCACTAGGTTTAGATATAT---------GGACCTA-A--CA-AACACTCGAAAGTG---GG-AAAACCA-TGTTGTGCTAGTTACTTA----GA-GC-TACA-TG--AAGCTAGC-ATGTTA----CAT--------TA----A-----CACATTGGT-TTAG--AATTACAGATATTAAATA-TC-TTTTTTT-CCCACTAATATACATG--TAT-TG-TTTACTGGAT-GTA-aataacttgtgttggtgtatatacttttgttgtaatcagacagaagaaaatacgttgggtatctaaagaattgtttcttattactatgtgaatgcaaaatacagtcttcatctattaaacttagcatcagttaaatagatccaacaaaaggtcctatagtcacaaaaaattttagatcagctaggatgacaagtcttgtatcctatcataactcttgtcataagacacataccttgtccgaaacgatattataacttgtcaaagaggtatttaaattgtaaactccaaatgcttagcaatggtcaatatatgcactaggtttagatatatggacctaacaaacactcgaaagtgggaaaaccatgttgtgctagttacttagagctacatgaagctagcatgttacattaacacattggtttagaattacagatattaaatatctttttttcccactaatatacatgtattgtttactggatgtaaattgcaaaaaatacaggagtgtatgaaaagaataatgaactgccgattgtgctaattagaaaaaagtaagataattttatttttgagcagatactacttgtgaattgattgtatttctagaattagtgctgttcgtgatctttcgtgtggatgcttgtaagatagattaatgttgccataatataattagattcatgaagtatataaacataacaaca
gi|10 : gaaaaggagtttaatagccccaatttaaaacaaaaagtgggaaacttatatagataaccttatctgacaaagactggaaattttatttttaaatgttttcgttatgtacgaaggatacaaaaataatttattattcaaatacgcgaaatatctgatgaactataattgctaccaactccttatcatttaaaatcaaactttctgatagaagatttttgtgttactttgttacacatcctgagcagaaacaattaacttgtaccatacttctcacatgatttgatgtgggataggtccaatcaagagtgttatttggagatatgactttataggtgagctggaatttaatgataattctgaaaaacatgattagattaaatacatcaaaaagcaattaataacttgtgttggtgtatatacttttgttgtaatcagacagaagaaaatacgttgggtatctaaagaattgtttcttattactatgtgaatgcaaaatacagtcttcatctattaaacttagcatcagttaaatagatccaacaaaaggtcctatagtcacaaaaaattttagatcagctaggatgacaagtcttgtatcctatcataactcttgtcataagacacataccttgtccgaaacgatattataactTGTTTAAA-C-ATTAT--AGAAATATTGAAAAAT-ATTTGTGTGAAA-TGCTTTCCA---AA--GTA-AA-T-C-AAA----CTCTAGT-A--AA-T--GGACAGCTATATG------------ATAaattgcaaaaaatacaggagtgtatgaaaagaataatgaactgccgattgtgctaattagaaaaaagtaagataattttatttttgagcagatactacttgtgaattgattgtatttctagaattagtgctgttcgtgatctttcgtgtggatgcttgtaagatagattaatgttgccataatataattagattcatgaagtatataaacataacaaca
gi|11 : G-TATCAA-TA-TCTTTTTTTT-CCCAC-----TATATACATGTATG-TTTACTG--T-GTA-TCATAAG---G---TATATATTGG--CTGTCGTG-T-GC-TA------TATT-ATTTACA------GTAC----TACTTTGATTGA-TTA-TAT--GAATG------CGTGTGATTGT----------------TAG---TGTAATGTC-ATA-TGTG-TAC-A-TTA-T--G--------T-----TTATA-T--AAATGT-CTAAAAATAAAAC---A--TAAAAAaaaaaaaaaaaaagaaatatatgttttttgatatttagtttgttgacaaactattttaacattcttaaggataaacatttattttttttttcttagagtatgtctttcttattattt
gi|12 : GG--CTGTCATG-T-GT-CAGGTGCTTGTTTAGTTACA--TGCA--------TGCTTC--TTAA-T-A-CAT--AAGAG------GGAGGGG----GAGGG------AT----GG---TGTAATGTC-ATA-TGTG-TAT-A-TTA-TGGG--------TATATAT-ATA-T--ATATGT-CTGAAAATAAAGCATTATTTAAAAAa
gi|13 : TATG------------ATAT-T---------GTGTACA-A--CA-A----------GTGA-TGA-AAAACCA-TGT------A--TA--TA----AA-GC-TATA-TC--AA-C-A-C-ATGT-ACATGCATG------TTAATTTA-----TGC-----T-TT-A--AAT--CAG-TATCA---A-TTTTTTCTCT-CTCAC-----TA------TATATG---TA-TG--T-ATA-TTATAAG---a
gi|14 : GTGTG------ACT-GTAG---TGTAATGTC-ATACTGCG-TAG-A-TTAAT--G--------T-----TTATA-T--AAATGT-CTAAAAAAAAAAC-TTA--TAAAAA
gi|15 : gtgGGAAATTT-TCTTTTATTGGTTGC-AAAAAAAAGTT-TATTT-ATTATT---CT-TGA-TCACAAGGCCTTAGGC-CAAAATTTTCAt
gi|16 : ------ATT-TGTG---TGTGATATC-ATG-TGTG-TAT-A-TT--T--A--------T-----T-GTA-T--AA-TGT-CTGAAAATAAAGCATTA---AAAA
gi|17 : AC-----TACAT------ATG-TTTACTG--T-GTA-TTATAAG---G---TATAT--TG
gi|2 : ttttaAAAGGAGTTTA-TAGCCCCAACTTTAAAAAAAAAAATAAGTGGGAAAACTTAT-TAGATGAATCCTTATCTGACAAAGACTGGGAATTT-ATTTTGTAAATGCTT-CGTTATGTACGAAGGATACAAAAATAATTTTATT-TTCAA-TAC-C-AAATA-CTGATGAACTAT-ATTG-TTACCAACTCCTT-TC-TT-CATAAAA-TTAAAATTTCAGATAATAA----TT--TGTG-T-ACTTTGT--AAATG---TGAAGC-AGAAACGA-TA-AC-TCA---CATA-TTT----TAC--GATT--GTG-TG--------CAA-GTCAA----CTTA---TTTTGG----ATGA---TTTT----G---T--GCAG-T-GG--TTTA---A--TG-C-AA-T--TGAAA---A-TGATTA---T-------AAG-ATA-T-CAAAAAA-AA-TGTTTTACTTGGT-AACA-C-A--GAAGG-GAGC-TGTTT----AGAAAAATG-TCTTTTATTGGTTGC-AAAA---AGTTATTTAT-TTTATT---CT-AGA-TCACAAGGCCTTAGGC-CAAAATTTTCAGAGGCATTGAA-TTTATTCAAG-T-TTTAT--AGAAATATGGAAAATT-GC---TGTGAAA-AGGTATTCA---AAT-GTA-AA-TCC-GAA-ATGCT-TAGC-A--AA-T--GGGCAA-TATATG------------ATAT-T---------GTTTATA-A--CA-A----------GTGA-TGG-AAAACCA-TGT------A--TA--TA----GA-GC-TACA-TC--AA-CTA-C-ATGT-A----CATG------TTA----A-----TAC-----T-TT-G--AAT--CAG-TATCAA-TA-TCTTTTTTTT-CCCAC-----TACATG--TATATG-TTTACTG--T-GTA-TCATAAG---G---TATAT--TGG--CTGTCGTG-T-GC-TA------TATT-ATTTACATGTACAGTAC----TACTTTGATTGA-TTA-TAT--GAATG------TGTGTGGTTGTGTGTG------ATT-TTAG---TGTAATGTC-ATA-TGTG-TAT-A-TTA-T--G--------T-----T-ATA-T--AAATGT-CTAAAAATAAAACATTA---AAAAA
gi|3 : AT-ATTGCT-ACCAACTCCTT-TC-TTTCATAAAA-TTAAA-TTTC-GATAATAA----TT--TGTG-TGACTTTTTTTAAATG---TGAAGC-AGAA-CAA-TACAC-TCA---CATAATTT----CATTTAGTT--GTG-TG--------CAA-GTCAA-----TTA---TTGTGA----ATGA---TTTT----AGTCT--GCAG-T-GG--TTTA--CA--TG-C-AA-T--TGAAA---G-TC-TTG---TTCTTGAGAAG-ATAAT-CCAAAAA-TATTGTTTTACTTGGTTAACATC-ATTGAAGGGAAGC-TGTTTTTAAAAAAAATTTAGCTTTATTTGGTTGC-AAAA---AGTT-TATAT-TTTATTATTCT-AGA-TCACAAGGCCTTAGGCACAAAATTTTCAGCAGCAGTGAA-TTACTTCAAGCT-TTTAT--AG-AATATGGAAAATT-AC---TGGG--A-AGGTATTAA---AAT-GTA-AA-T-C-AAA-ATGCT-TAGCAA--AA-T--GTGGAA-TATATG------------ATAT-T---------GTA---A-A--CA-A----------GTGA-T-G-AAAACCATTGT------A--TA--TA----GA-ACTTACATTC--AA-ACA-CAATGT-A----CATG------TTA----A-----TAC-----TGTT-GA-AAT--CAG-TATC-A-TATTCTTTTTTTTCCCCAC-----TAGA-----ATGT--TTTACTG----GTT-TCATAAG---GGTATATAT--TAGGCCTGTCGTG-T-GCATA------TATT-AATTAT---CACAATAC----TACTTTGATGAG-TTA-TATTGGAATGGTGAAATGTATTGTTGTGTATG----------TTAGAAATGTAATGTCAATA-TATGTTACAA-TTA-T--G--------T-----T-TTA-TTAAAATGT-CTAAAAAAAAAACATT
gi|4 : cAACTAT-ATTGCTTACCAACTTCTT-TC-TT-C-TAAAA-T-AAATTCT-AGATAATAA----TT--TGTG-T-ACTTTTGT-AAATG---TGAAGCCAGAAACAA-TA-AAATCA---CATA-TTT----TAT--GTTT--GTGCTG--------CAA-ATCAA----TTTA---TTTTGA----ATGA---TTTT----G---TTTGCAG-T-GG--TTTA--TA--GG-C-AAAT--TGAAA---A-TTATTA---T-------AAG------------------TGTTTAATT--GT-ACCA-CCA--GAAGG-AAGC-TGTTT----AGGAAATTT-TTCTTTATTGG-TGC-AAAA---AGTT-TATTTATTTATT---CT-AGATTCACAA-GCCTTA-GC-CAAAA-TTTCAGAGGCAGTGAATTTTATCAAAG-T-TTTAT--AGAAATAT-GAAAATTAACG--TGTGAAA-AGGCATTAATTTAAT-GTATAA-TCCAAAA-ATGCT-TAGC-A--AAGTGGGGGCAA-TAAATG------------ATCA-T---------ATGTATATA--CACA----------GTGA-TGGAAAAACCA-TGG------A--TA--TATTAGAA-GC-TACA-TTCAAA-CTA-C-ATGT-A----CATG------TTA----A-----TAC-----T-TT-GGAAAT--CAGCTATCAA-TATTCTTTTTTTT-TTCAA------ACATA--TATATGATTTACCG--TCGTATTCATAAGCGTA---TATAT--TGG--CTGTCGTGTT-GC-TA------TATT-ATTTACA--T---GTAC----TACTTTAATTGATTTATTAT--GAAAG------TG---------GTGTG------ATTGTTAG---TGTAATGTC-ATA-TGGA-TAC-ATTTA-T--A--------TG----T-ATACT--AAATGTACT-CAAATAAAACATTA--TAAAAAtattgaaaa
gi|5 : TAC-ATTGCTTAT-AACTCGTT-TCCTT-CACAAAACTTAAACTTGTAGAAAATGA----CAAATGTT-T-CTCTTGT--AAATGAG-TGAAG--AGAAACAA-TT-TC-TCA---TATA-TTT-----AT--GATA--TTG-T----------AATATCAC----CCTAGCCTTTTGG----G-GAGATTTTT----G---T--GAAA-TTGG-----AACCAGTTG-CTGA-T--TGAAA---AAGGATTA---T-------AAG-ATT-TTCGAAAAG-AATTGTATTACTTGGA-AATG-T-T--AATGG-AAGCTTGTT--------ATATTT-TTTCTTTCT-ATAGCAAAAA---AGCA-TATAT-ATTATG---CCAAGA-TC-CAAGG--TTTGAC-C-AAATTTTTAT-GCCATTAAA-TTTGTTTAAA-CATATAT--AGAAATATTGAAAAA--AT---TGT-AAA-TGCTTTCCA---AA--G-A-AA-TCC-AAA-ACTCC-TAGT-A--AA-T--G
gi|6 : -T-TTTATCTAGAA-TA---AAAGTT-AC---CATGAAA-AGGTATTTA---AAT-GTA-AA-ACC-AAA-ATGCT-TAGC-A--AA-T--GGGCAAATATATG------------ATAT-T---------GTATATA-AAACA-A----------GTGAATGG-AAAACGA-TGT------A--TA--TA----GATGC-TACA-TC--AA-CAA-C-ATGT-A----CATG------TTAT---A-----AAC-----T-TTTG--AAT--CAG-TATCAA-TA-TCTTTTTTT---CCAC-----TA------TATATG-TTTACTG--T-GTA-TCATAAG---G---TATAT--TGG--CTGTCGTG-TTGC-TA------TATT-ATTTACA------GTAC----TACTTTGATTGA-TTA-TAT--GAATG------TGTGTGGTTGTGTGTG------ATTGTTAG---TGTAATGTC-ATA-TGCG-TAT-ATTTA-T-----------T-----T-ATA-T--AAATGT-CTGAAAATAAAACATTA--TAAAAAacactattatacttaacgttttgatatttagtttgtagaaaacctatttaac
gi|7 : ttt------A--TA--TA----------TACA-TC--AA-CTA-C-ATGT-A----CATACATGTTTTA----AATTTATAC-----T-TT-G--AAT--CAG-TATCAA-T------TTCGTT-CTCAC-----TA------TATATG-TTT---G--T-ATA-TTATAAG---G---CATAT--TAA--CTGTCCCG-T-GC-TA------TATT-ATTTACAGTCATAATAAATTGTACTTTGATTGA-TTA-TAT--GAATG------TGTATGATTGTGTGTGTATGTAATTGTTAG---TGTAATGTC-ATA-TGTG-TAT-A-TCA-T--G--------TGTA--T-ATA-T--AAATGT-CTGAAAATAAAGCATTA--a
gi|8 : cGT------A--TA--TA----GA-GC-TACA-TC--AA-CTA-C-ATGT-A----CATG------TTA----A-----TAC-----T-TT-G--AAT--CAG-TATCAA-T----TTTTTTTT-TCCAC-----TA------TATATG-TTTAGTG--T-GTA-TCATAAG---G---TATAT--TGG--CTGTCGTG-T-GC-TA------TATT-ATT------TACAGTAC----TA---TGATTGA-TTA-TAT--GAATG------TGTGTGATTG----------------TTAG---TGTAATGTC-ATA-TGTG-TAT-A-TTA-T--GTTTTAAAAT-----T-ATA-T--AAATGT-CTAAAAATAAAACATTA--TAAAAAaa
gi|9 : CTTCTGTTAGCTTC-GAA-----GTT-TATAT-GTTATT---CC-AGA-TCACAAGGCCCTAAGT-C-ATTTTTTCTGAGGCAGTG-A-TTTATCTAAG-T-GACAC--AGAAATATGGAAAAAT-AC---TTTGTAA-ATGTGTTCC---ATT-CTA-AAGCCC-AAATATGTA-TGGC-AAGAA-T----GCAA-TTTACG-------------TAT-TTTTATGTACGTGTATA-A--AA-AT---------GTGA-TGA-AAAACCA-
blockSeqs : . C A ATAA A . AT . G . T . . C . . TT . C TCA C T A CA CAAA . G TT AG C . C A . A T TT . C . T C GCCT . GAT AGTCT C . T T ACCAGT CT A . AA TTCTTGAG ATAATCC ATAT T T ATCATT G T TTTAA A A A G T A . A AT ATT A T G A A C T CT CT G T A TTG . TTT T T GCC A T C A AG G GG C . . TTTATGTAC T AA C T A A T . . . TTAGA T T T CA . T . A . CATG CATGTT AATTTA . G GGA . C . AT C . TATACA A . C T CGT GTA . GC T T A GGTGCT T ATGTACAG ATTG T T TG GTGAAA T TATGTAATTG AAA A C T A T A GTTTTAAAAT T C TA A G TTT
blockSeqs : . TT . . CA . T T TA TT . . T . . . . . . . C . . . . . T T . . GTTT C . . T CA C . . A T ATTTTCG GAAT T . ACCA . . T A . T G T . . . T . . . G . A A . CA . G T . G . . T . TC . . . . . . . A . . . . . . . . . . . . . A . . . . . C . . . . . ATTTA . . GA . . . AT . . CATG . . . . . . . . . . . . . AGTCATAA . . . . . T ATTG . . . . . T . GGGTATATA . . . . A T
blockSeqs : . TT . . CA . T C C TT . . . . . . . . . . T . . . . . C T . . GT C . . T TA C . . G T ATATCA AAA . . GTT . . . G . A G T . . . T . . . G . A A . T . T T . . . . T . TC . . . . . . . . . . . . . . . . . . . . . G . . . . . T . . . . . TA . . TG . . . A . . CATA . . . . . . . . . . . . . ATGCA . . . . . T ATTG . . . . . . . GTGTA . . . . G T
blockSeqs : . T . . C . . . A TT . . . . . . . . . . . . . . . . . T . . GT A . . . A C . . A T . . . . T A C . . . A . . . A . . . . T . G A . . . . T . TC . . . . . . . . . . . . . . . . . . . . . G . . . . . A . . . . . A . . A . . . A . . CAT . . . . . . . . . . . . . CACAA . . . . . T ACT . . . . . . . ATG . . . . A T
blockSeqs : G . . . . . G . . . . . . T . . T . . . . T . AC . . . . . . . . . . . . . . . . . . . . . G . . . . . T . . . . . A . . G . . . A . . GA . . . . . . . . . . . . . TACAG . . . . . . ATT . . . . . . . GT . . . . A T
blockSeqs : T . . A . . . . . . T . . . . . . . . . . . . . . . . . . . . . G . . . . . T . . . . . A . . G . . . A . . . . . . . . . . . . . . . . ATG . . . . . . ATT . . . . . . . AT . . . . G .
blockSeqs : . . . . . T . . . . . . . . . . . . . . . . . . . . . . . A . . G . . . . . . . . . . . . . . . . . . . . AG . . . . . . AT . . . . . . . GT . . . . G .
blockSeqs : . . . . . . . . . . . . . . . . . . . GT . . . . A
blockSeqs : . . . . . . . . . . . . . . T . . . . .
blockSeqCons : TT CA* CA TT****** T* *** *** T**** ** ******** C**** T*** **** GT********* T** CA**** C** ** A**** T********** AA*** *** T* ************ ********** ****** ** ** ***** G*** ** ***** AT**** ** ** ACACAG** ATT*******
originalCons : AAAGGAGTTTAATAGCCCCAACTTTAAAANAAAAAATAAGTGGGAAAACTTATATAGATGAATCCTTATCTGACAAAGACTGGGAATTTTATTTTGTAAATGCTTTCGTTATGTACGAAGGATACAAAAATAATTTTATTATTCAAATACGCGAAATATCTGATGAACTAT-ATTGCTTACCAACTCCTT-TC-TT-CATAAAA-TTAAACTTTCAGATAATAA----TT--TGTG-T-ACTTTGTT-AAATG---TGAAGC-AGAAACAA-TA-AC-TCA---CATA-TTT----CAT--GATT--GTG-TG--------CAA-ATCAA----CTTA---TTTTGG----ATGA---TTTT----G---T--GCAG-T-GG--TTTA--CA--TG-C-AA-T--TGAAA---A-TGATTA---T-------AAG-ATA-T-CGAAAAG-AATTGTTTTACTTGGT-AACG-C-A--GAAGG-AAGC-TGTTT----AGGAAATTT-TCTTTTNTTGGTTGC-AAAA---AGTT-TATAT-NTTATT---CT-AGA-TCACAAGGCCTTAGGC-CAAAATTTTCAGAGGCAGTGAA-TTTATTTAAG-T-TTTAT--AGAAATATGGAAAANT-AC---TGTGAAA-AGGTATTCA---AAT-GTA-AA-TCC-AAA-ATGCT-TAGC-A--AA-T--GGGCAA-TATATG------------ATAT-T---------GTGTATA-A--CA-A----------GTGA-TGG-AAAACCA-TGT------A--TA--TA----GA-GC-TACA-TC--AA-CTA-C-ATGT-A----CATG------TTA----A-----TAC-----T-TT-G--AAT--CAG-TATCAA-TA-TCTTTTTTTT-CCCAC-----TACAT---TATATG-TTTACTG--T-GTA-TCATAAG---G---TATAT--TGG--CTGTCGTG-T-GC-TA------TATT-ATTTACA--TACAGTAC----TACTTTGATTGA-TTA-TAT--GAATG------TGTGTGGTTGTGTGTG------ATT-TTAG---TGTAATGTC-ATA-TGTG-TAT-A-TTA-T--G--------T-----T-ATA-T--AAATGT-CTGAAAATAAAACATTA--TAAAAA
finalCons : AAAGGAGTTTAATAGCCCCAACTTTAAAANAAAAAATAAGTGGGAAAACTTATATAGATGAATCCTTATCTGACAAAGACTGGGAATTTTATTTTGTAAATGCTTTCGTTATGTACGAAGGATACAAAAATAATTTTATTATTCAAATACGCGAAATATCTGATGAACTAT-ATTGCTTACCAACTCCTT-TC-TTCA-TAAAA-TTAAACTTTCAGATAATAATT------TGTG-T-ACTTTGTT-AAATG---TGAAGC-AGAAACAA-TA-AC-TCA---CATA-TTTT----AT--GATT--GTG-TG--------CAA-ATCAAC----TTAT---TTTGG----ATGA---TTTTGT---------GCAG-T-GGT--TTACA----TGC--AA-T--TGAAAA----TGATTAT----------AAG-ATA-T-CGAAAAAA---TGTTTTACTTGGT-AACG-C-A--GAAGG-AAGC-TGTTT----AGGAAATTT-TCTTTTNTTGGTTGC-AAAA---AGTT-TATAT-NTTATT---CT-AGA-TCACAAGGCCTTAGGC-CAAAATTTTCAGAGGCAGTGAA-TTTATTTAAG-T-TTTAT--AGAAATATGGAAAANT-AC---TGTGAAA-AGGTATTCA---AAT-GTA-AA-TCC-AAA-ATGCT-TAGC-A--AA-T--GGGCAA-TATATG------------ATAT-T---------GTGTATA-A--CA-A----------GTGA-TGG-AAAACCA-TGT------A--TA--TA----GA-GC-TACA-TC--AA-CTA-C-ATGT-A----CATG------TTA----A-----TAC-----T-TTG---AAT--CAG-TATCAA-TA-TCTTTTTTTT-CCCAC-----TAAT----TATATG-TTTACTG--T-GTA-TCATAAG---G---TATAT--TGG--CTGTCGTG-T-GC-TA------TATT-ATTTACACACAG--TAC----TACTTTGATTGA-TTA-TAT--GAATG------TGTGTGGTTGTGTGTGATT-------TTAG---TGTAATGTC-ATA-TGTG-TAT-A-TTA-T--G--------T-----T-ATA-T--AAATGT-CTGAAAATAAAACATTA--TAAAAA
Alignments
lowQualScore : 1 1 2222 1 1 11 1 1 1 1 1 1 222 1 1 111 11111111 11 222 111 22222 11 11 22222222 22222 1111 1111 111 22222222222 111 222222 11 11111 4444444444444444444444444444444444 1 2222222 1 1 22222 11111 111 111 1 222222222222 222222222 3333333333 111111 11111 1111 111111 1111111111 11111 1111 11 555555 11111 3333333 1111 111111 2222222222 33333333333333333
lowQualScore : 5 5 1 4444 5 5 88 5 5 5 5 5 5 000 5 8 11 8 6 333 8 3 8 99 0 88888888 8 8 88 555 0 8 0 8 8 8 444 8 33333 11 11 8 99999999 8 55555 4444 7777 0 444 66666666666 5 8 8 111 666666 999 8 11 66666 0 3333333333333333333333333333333333 3 0 7777777 0 0 44444 1 8 1 1 33333 6 77 111 6 6 1 6 3 5 0 8 0 5 1 5 77 7 1 5 333 0 5 0 888 88 5 777 5 5 5 5 66 5 66 1 555555555555 5 222222222 00 5 77 5 0000000000 5 5 5 444444 66 66 00000 5 5 5 66 5 2 5 5 5 0000 444444 9999999999 22222 5 3333 66 8 4 00 4 666666 00000 8 55 4 4 777 888 66 77 5 5 5 8888888 2222 5 5 77 666666 0 1 7777777777 777 4 4 4 4 8 4 00000000000000000 8 4 55 4 3 0 999
lowQualScore : . . . .... . . .. . . . . . . ... . . .. . . ... . . . .. . ........ . . .. ... . . . . . . ... . ..... .. .. . ........ . ..... .... .... . ... ........... . . . ... ...... ... . .. ..... . .................................. . . ....... . . ..... . . . . ..... . .. ... . . . . . . . . . . . . .. . . . ... . . . ... .. . ... . . . . .. . .. . ............ . ......... .. . .. . .......... . . . ...... .. .. ..... . . . .. . . . . . .... ...... .......... ..... . .... .. . . .. . ...... ..... . .. . . ... ... .. .. . . . ....... .... . . .. ...... . . .......... ... . . . . . . ................. . . .. . . . ...
lowQualScore : 5 0 0 5555 5 5 55 5 0 5 5 5 5 000 5 0 66 0 0 666 0 8 2 22 8 22222222 0 0 66 000 8 0 8 0 0 0 000 0 88888 00 00 0 00000000 0 22222 8888 0000 8 000 22222222222 0 0 0 888 222222 222 0 00 00000 8 7777777777777777777777777777777777 2 0 2222222 0 0 55555 4 0 0 7 33333 7 77 777 7 7 0 7 5 6 8 0 3 7 9 7 99 9 0 7 888 4 0 2 888 22 0 555 0 0 0 0 99 0 99 4 666666666666 7 999999999 66 7 99 7 7777777777 7 7 7 444444 99 99 99999 0 0 0 99 0 2 0 0 0 6666 444444 1111111111 55555 0 9999 99 9 4 88 4 444444 00000 0 55 0 0 888 888 99 99 7 7 7 7777777 1111 7 7 99 444444 4 4 6666666666 000 0 0 0 0 0 0 22222222222222222 0 0 55 0 0 8 444
consensus : AAAGGAGTTTAATAGCCCCAACTTTAAAANAAAAAATAAGTGGGAAAACTTATATAGATGAATCCTTATCTGACAAAGACTGGGAATTTTATTTTGTAAATGCTTTCGTTATGTACGAAGGATACAAAAATAATTTTATTATTCAAATACGCGAAATATCTGATGAACTAT-ATTGCTTACCAACTCCTT-TC-TT-CATAAAA-TTAAACTTTCAGATAATAA----TT--TGTG-T-ACTTTGTT-AAATG---TGAAGC-AGAAACAA-TA-AC-TCA---CATA-TTT----CAT--GATT--GTG-TG--------CAA-ATCAA----CTTA---TTTTGG----ATGA---TTTT----G---T--GCAG-T-GG--TTTA--CA--TG-C-AA-T--TGAAA---A-TGATTA---T-------AAG-ATA-T-CGAAAAA-AA-T-GTTTTACTTGGT-AACG-C-A--GAAGG-AAGCT-GTTT----AGGAAATTT-TCTTTTNTTGGTTGCAAAA---A-GTT-TATAT-NTTATT---CTA-GA-TCACAAGGCCTTAGGC-CAAAATTTTCAGAGGCAGTGAA-TTTATTTAAG-TTT-TAT--AGAAATATGGAAAANT-AC---TGTGAAA-AGGTATTCA---AAT-GTA-AA-TCC-AAA-ATGCT-TAGC-A--AA-T--GGGCAA-TATATG------------ATAT-T---------GTGTATA-A--CA-A----------GTGA-TGG-AAAACCA-TGT------A--TA--TA----GA-GC-TACA-TC--AA-CTA-C-ATGT-A----CATG------TTA----A-----TAC-----T-TT-G--AAT--CAG-TATCAA-TA-TCTTTTTTTT-CCCACTA-A----TATA-----TG-TTTACTG--T-GTA-TCATAAG---G---TATAT--TGG--CTGTCGTG-T-GC-TATATTATTTACA--CACAGTAC----TACTTTGATTGA-TTA-TAT--GAATG------TGTGTGGTTGTGTGTG------ATT-TTAG---TGTAATGTC-ATA-TGTG-TAT-A-TTA-T--G--------T-----T-ATA-T--AAATGT-CTGAAAATAAAACATTA--TAAAAA
Reference ( family-829 ) : AAAGGAGTTTAATAGCCCCAACTTTAAAANAAAAAATAAGTGGGAAAACTTATATAGATGAATCCTTATCTGACAAAGACTGGGAATTTTATTTTGTAAATGCTTTCGTTATGTACGAAGGATACAAAAATAATTTTATTATTCAAATACGCGAAATATCTGATGAACTAT-ATTGCTTACCAACTCCTT-TC-TT-CATAAAA-TTAAACTTTCAGATAATAA----TT--TGTG-T-ACTTTGTT-AAATG---TGAAGC-AGAAACAA-TA-AC-TCA---CATA-TTT----TAT--GATT--GTG-TG--------CAA-ATCAA----CTTA---TTTTGG----ATGA---TTTT----G---T--GCAG-T-GG--TTTA--CA--TG-C-AA-T--TGAAA---A-TGATTA---T-------AAG-ATA-T-CGAAAAA-A--T-GTTTTACTTGGT-AACG-C-A--GAAGG-AAGCT-GTTT----AGGAAATTT-TCTTTTNTTGGTTGCAAAA---A-GTT-TATAT-NTTATT---CTA-GA-TCACAAGGCCTTAGGC-CAAAATTTTCAGAGGCAGTGAA-TTTATTTAAG-TTT-TAT--AGAAATATGGAAAANT-AC---TGTGAAA-AGGTATTCA---AAT-GTA-AA-TCC-AAA-ATGCT-TAGC-A--AA-T--GGGCAA-TATATG------------ATAT-T---------GTGTATA-A--CA-A----------GTGA-TGG-AAAACCA-TGT------A--TA--TA----GA-GC-TACA-TC--AA-CTA-C-ATGT-A----CATG------TTA----A-----TAC-----T-TT-G--AAT--CAG-TATCAA-TA-TCTTTTTTTT-CCCACTA-AT---TATA-----TG-TTTACTG--T-GTA-TCATAAG---G---TATAT--TGG--CTGTCGTG-T-GC-TATATTATTTACA--CACAGTAC----TACTTTGATTGA-TTA-TAT--GAATG------TGTGTGGTTGTGTGTG------ATT-TTAG---TGTAATGTC-ATA-TGTG-TAT-A-TTA-T--G--------T-----T-ATA-T--AAATGT-CTGAAAATAAAACATTA--TAAAAA
gi|1 : AAAGGAGTTTAATAGCCCCAA-TTTAAAACAAAAA----GTGGGAAA-CTTATATAGATAA--CCTTATCTGACAAAGACTGGAAATTTTATTTT-TAAATGTTTTCGTTATGTACGAAGGATACAAAAATAATTT-ATTATTCAAATACGCGAAATATCTGATGAACTATAATTGC-TACCAACTCCTTATCATT---TAAAA-TCAAACTTTCTGATAG-AAGATTTT--TGTGTT-ACTTTGTT-ACACATCCTG-AGC-AGAAACAATTA-AC-TTGTACCATA-CTTCTCACAT--GATTTGATG-TGGGATAGGTCCA-ATCAAGAGTGTTA----TTTGGAGATATGA---CTTTATAGG---T--G-AGCT-GGAATTTA---A--TGAT-AA-TTCTGAAAAACA-TGATTAGATT-------AAATACA-T-CAAAAA
gi|1 : ga---TGTCAAAGAGGTATTTA---AATTGTA-AA-CTC-CAA-ATGCT-TAGC-A--A--T--GGTCAA-TATATGCACTAGGTTTAGATATAT---------GGACCTA-A--CA-AACACTCGAAAGTG---GG-AAAACCA-TGTTGTGCTAGTTACTTA----GA-GC-TACA-TG--AAGCTAGC-ATGTTA----CAT--------TA----A-----CACATTGGT-TTAG--AATTACAGATATTAAATA-TCTTTT-TTT-CCCACTA-ATA--TACATGTATTG-TTTACTGGAT-GTA-gcaattaataacttgtgttggtgtatatacttttgttgtaatcagacagaagaaaatacgttgggtatctaaagaattgtttcttattactatgtgaatgcaaaatacagtcttcatctattaaacttagcatcagttaaatagatccaacaaaaggtcctatagtcacaaaaaattttagatcagctaggatgacaagtcttgtatcctatcataactcttgtcataagacacataccttgtccgaaacgatattataacttgtcaaagaggtatttaaattgtaaactccaaatgcttagcaatggtcaatatatgcactaggtttagatatatggacctaacaaacactcgaaagtgggaaaaccatgttgtgctagttacttagagctacatgaagctagcatgttacattaacacattggtttagaattacagatattaaatatctttttttcccactaatatacatgtattgtttactggatgtaaattgcaaaaaatacaggagtgtatgaaaagaataatgaactgccgattgtgctaattagaaaaaagtaagataattttatttttgagcagatactacttgtgaattgattgtatttctagaattagtgctgttcgtgatctttcgtgtggatgcttgtaagatagattaatgttgccataatataattagattcatgaagtatataaacataacaaca
gi|10 : gaaaaggagtttaatagccccaatttaaaacaaaaagtgggaaacttatatagataaccttatctgacaaagactggaaattttatttttaaatgttttcgttatgtacgaaggatacaaaaataatttattattcaaatacgcgaaatatctgatgaactataattgctaccaactccttatcatttaaaatcaaactttctgatagaagatttttgtgttactttgttacacatcctgagcagaaacaattaacttgtaccatacttctcacatgatttgatgtgggataggtccaatcaagagtgttatttggagatatgactttataggtgagctggaatttaatgataattctgaaaaacatgattagattaaatacatcaaaaagcaattaataacttgtgttggtgtatatacttttgttgtaatcagacagaagaaaatacgttgggtatctaaagaattgtttcttattactatgtgaatgcaaaatacagtcttcatctattaaacttagcatcagttaaatagatccaacaaaaggtcctatagtcacaaaaaattttagatcagctaggatgacaagtcttgtatcctatcataactcttgtcataagacacataccttgtccgaaacgatattataactTGTTTAAA-CAT-TAT--AGAAATATTGAAAAAT-ATTTGTGTGAAA-TGCTTTCCA---AA--GTA-AA-T-C-AAA----CTCTAGT-A--AA-T--GGACAGCTATATG------------ATAaattgcaaaaaatacaggagtgtatgaaaagaataatgaactgccgattgtgctaattagaaaaaagtaagataattttatttttgagcagatactacttgtgaattgattgtatttctagaattagtgctgttcgtgatctttcgtgtggatgcttgtaagatagattaatgttgccataatataattagattcatgaagtatataaacataacaaca
gi|11 : G-TATCAA-TA-TCTTTTTTTT-CCCACTATATACATGTA-----TG-TTTACTG--T-GTA-TCATAAG---G---TATATATTGG--CTGTCGTG-T-GC-TATATTATTTACA------GTAC----TACTTTGATTGA-TTA-TAT--GAATG------CGTGTGATTGT----------------TAG---TGTAATGTC-ATA-TGTG-TAC-A-TTA-T--G--------T-----TTATA-T--AAATGT-CTAAAAATAAAAC---A--TAAAAAaaaaaaaaaaaaagaaatatatgttttttgatatttagtttgttgacaaactattttaacattcttaaggataaacatttattttttttttcttagagtatgtctttcttattattt
gi|12 : TGG---TGTAATGTC-ATA-TGTG-TAT-A-TTA-TGGG--------TATATAT-ATA-T--ATATGT-CTGAAAATAAAGCATTATTTAAAAAa
gi|13 : ggctgtcatgtgtcaggtgcttgtttagttacatgcatgcttcttaatacataagagggagggggagggaTATG------------ATAT-T---------GTGTACA-A--CA-A----------GTGA-TGA-AAAACCA-TGT------A--TA--TA----AA-GC-TATA-TC--AA-C-A-C-ATGT-ACATGCATG------TTAATTTA-----TGC-----T-TT-A--AAT--CAG-TATCA---A-TTTTTTCTCT-CTCACTA------TATA-----TG---TA-TG--T-ATA-TTATAAG---a
gi|14 : GTGTG------ACT-GTAG---TGTAATGTC-ATACTGCG-TAG-A-TTAAT--G--------T-----TTATA-T--AAATGT-CTAAAAAAAAAAC-TTA--TAAAAA
gi|15 : gtgGGAAATTT-TCTTTTATTGGTTGCAAAAAAAA-GTT-TATTT-ATTATT---CTT-GA-TCACAAGGCCTTAGGC-CAAAATTTTCAt
gi|16 : ------ATT-TGTG---TGTGATATC-ATG-TGTG-TAT-A-TT--T--A--------T-----T-GTA-T--AA-TGT-CTGAAAATAAAGCATTA---AAAA
gi|17 : ACTA------CATA-----TG-TTTACTG--T-GTA-TTATAAG---G---TATAT--TG
gi|2 : ttttaAAAGGAGTTTA-TAGCCCCAACTTTAAAAAAAAAAATAAGTGGGAAAACTTAT-TAGATGAATCCTTATCTGACAAAGACTGGGAATTT-ATTTTGTAAATGCTT-CGTTATGTACGAAGGATACAAAAATAATTTTATT-TTCAA-TAC-C-AAATA-CTGATGAACTAT-ATTG-TTACCAACTCCTT-TC-TT-CATAAAA-TTAAAATTTCAGATAATAA----TT--TGTG-T-ACTTTGT--AAATG---TGAAGC-AGAAACGA-TA-AC-TCA---CATA-TTT----TAC--GATT--GTG-TG--------CAA-GTCAA----CTTA---TTTTGG----ATGA---TTTT----G---T--GCAG-T-GG--TTTA---A--TG-C-AA-T--TGAAA---A-TGATTA---T-------AAG-ATA-T-CAAAAAA-AA-T-GTTTTACTTGGT-AACA-C-A--GAAGG-GAGCT-GTTT----AGAAAAATG-TCTTTTATTGGTTGCAAAA---A-GTTATTTAT-TTTATT---CTA-GA-TCACAAGGCCTTAGGC-CAAAATTTTCAGAGGCATTGAA-TTTATTCAAG-TTT-TAT--AGAAATATGGAAAATT-GC---TGTGAAA-AGGTATTCA---AAT-GTA-AA-TCC-GAA-ATGCT-TAGC-A--AA-T--GGGCAA-TATATG------------ATAT-T---------GTTTATA-A--CA-A----------GTGA-TGG-AAAACCA-TGT------A--TA--TA----GA-GC-TACA-TC--AA-CTA-C-ATGT-A----CATG------TTA----A-----TAC-----T-TT-G--AAT--CAG-TATCAA-TA-TCTTTTTTTT-CCCACTACATG--TATA-----TG-TTTACTG--T-GTA-TCATAAG---G---TATAT--TGG--CTGTCGTG-T-GC-TATATTATTTACATGTACAGTAC----TACTTTGATTGA-TTA-TAT--GAATG------TGTGTGGTTGTGTGTG------ATT-TTAG---TGTAATGTC-ATA-TGTG-TAT-A-TTA-T--G--------T-----T-ATA-T--AAATGT-CTAAAAATAAAACATTA---AAAAA
gi|3 : AT-ATTGCT-ACCAACTCCTT-TC-TTTCATAAAA-TTAAA-TTTC-GATAATAA----TT--TGTG-TGACTTTTTTTAAATG---TGAAGC-AGAA-CAA-TACAC-TCA---CATAATTT----CATTTAGTT--GTG-TG--------CAA-GTCAA-----TTA---TTGTGA----ATGA---TTTT----AGTCT--GCAG-T-GG--TTTA--CA--TG-C-AA-T--TGAAA---G-TC-TTG---TTCTTGAGAAG-ATAAT-CCAAAAATA--TTGTTTTACTTGGTTAACATC-ATTGAAGGGAAGCT-GTTTTTAAAAAAAATTTAGCTTTATTTGGTTGCAAAA---A-GTT-TATAT-TTTATTATTCTA-GA-TCACAAGGCCTTAGGCACAAAATTTTCAGCAGCAGTGAA-TTACTTCAAGCTTT-TAT--AG-AATATGGAAAATT-AC---TGGG--A-AGGTATTAA---AAT-GTA-AA-T-C-AAA-ATGCT-TAGCAA--AA-T--GTGGAA-TATATG------------ATAT-T---------GTA---A-A--CA-A----------GTGA-T-G-AAAACCATTGT------A--TA--TA----GA-ACTTACATTC--AA-ACA-CAATGT-A----CATG------TTA----A-----TAC-----TGTT-GA-AAT--CAG-TATC-A-TATTCTTTTTTTTCCCCACTA-G-----A-A-----TGTTTTACTG----GTT-TCATAAG---GGTATATAT--TAGGCCTGTCGTG-T-GCATATATTAATTAT---CACAATAC----TACTTTGATGAG-TTA-TATTGGAATGGTGAAATGTATTGTTGTGTATG----------TTAGAAATGTAATGTCAATA-TATGTTACAA-TTA-T--G--------T-----T-TTA-TTAAAATGT-CTAAAAAAAAAACATT
gi|4 : cAACTAT-ATTGCTTACCAACTTCTT-TC-TT-C-TAAAA-T-AAATTCT-AGATAATAA----TT--TGTG-T-ACTTTTGT-AAATG---TGAAGCCAGAAACAA-TA-AAATCA---CATA-TTT----TAT--GTTT--GTGCTG--------CAA-ATCAA----TTTA---TTTTGA----ATGA---TTTT----G---TTTGCAG-T-GG--TTTA--TA--GG-C-AAAT--TGAAA---A-TTATTA---T-------AAG------------------T-GTTTAATT--GT-ACCA-CCA--GAAGG-AAGCT-GTTT----AGGAAATTT-TTCTTTATTGG-TGCAAAA---A-GTT-TATTTATTTATT---CTA-GATTCACAA-GCCTTA-GC-CAAAA-TTTCAGAGGCAGTGAATTTTATCAAAG-TTT-TAT--AGAAATAT-GAAAATTAACG--TGTGAAA-AGGCATTAATTTAAT-GTATAA-TCCAAAA-ATGCT-TAGC-A--AAGTGGGGGCAA-TAAATG------------ATCA-T---------ATGTATATA--CACA----------GTGA-TGGAAAAACCA-TGG------A--TA--TATTAGAA-GC-TACA-TTCAAA-CTA-C-ATGT-A----CATG------TTA----A-----TAC-----T-TT-GGAAAT--CAGCTATCAA-TATTCTTTTTTTT-TTCA--A-ACATATATA-----TGATTTACCG--TCGTATTCATAAGCGTA---TATAT--TGG--CTGTCGTGTT-GC-TATATTATTTACA--T---GTAC----TACTTTAATTGATTTATTAT--GAAAG------TG---------GTGTG------ATTGTTAG---TGTAATGTC-ATA-TGGA-TAC-ATTTA-T--A--------TG----T-ATACT--AAATGTACT-CAAATAAAACATTA--TAAAAAtattgaaaa
gi|5 : TAC-ATTGCTTAT-AACTCGTT-TCCTT-CACAAAACTTAAACTTGTAGAAAATGA----CAAATGTT-T-CTCTTGT--AAATGAG-TGAAG--AGAAACAA-TT-TC-TCA---TATA-TTT-----AT--GATA--TTG-T----------AATATCAC----CCTAGCCTTTTGG----G-GAGATTTTT----G---T--GAAA-TTGG-----AACCAGTTG-CTGA-T--TGAAA---AAGGATTA---T-------AAG-ATT-TTCGAAAAG-AATT-GTATTACTTGGA-AATG-T-T--AATGG-AAGCTTGTT--------ATATTT-TTTCTTTCTA-TAGCAAAA---AAGCA-TATAT-ATTATG---CCAAGA-TC-CAAGG--TTTGAC-CAAA-TTTTTAT-GCCATTAAA-TTTGTTTAAA-CATATAT--AGAAATATTGAAAAA--AT---TGT-AAA-TGCTTTCCA---AA--G-A-AA-TCC-AAA-ACTCC-TAGT-A--AA-T--G
gi|6 : -TTT-TATCTAGAA-TA---AAAGTT-AC---CATGAAA-AGGTATTTA---AAT-GTA-AA-ACC-AAA-ATGCT-TAGC-A--AA-T--GGGCAAATATATG------------ATAT-T---------GTATATA-AAACA-A----------GTGAATGG-AAAACGA-TGT------A--TA--TA----GATGC-TACA-TC--AA-CAA-C-ATGT-A----CATG------TTAT---A-----AAC-----T-TTTG--AAT--CAG-TATCAA-TA-TCTTTTTTT---CCACTA------TATA-----TG-TTTACTG--T-GTA-TCATAAG---G---TATAT--TGG--CTGTCGTG-TTGC-TATATTATTTACA------GTAC----TACTTTGATTGA-TTA-TAT--GAATG------TGTGTGGTTGTGTGTG------ATTGTTAG---TGTAATGTC-ATA-TGCG-TAT-ATTTA-T-----------T-----T-ATA-T--AAATGT-CTGAAAATAAAACATTA--TAAAAAacactattatacttaacgttttgatatttagtttgtagaaaacctatttaac
gi|7 : ttt------A--TA--TA----------TACA-TC--AA-CTA-C-ATGT-A----CATACATGTTTTA----AATTTATAC-----T-TT-G--AAT--CAG-TATCAA-T------TTCGTT-CTCACTA------TATA-----TG-TTT---G--T-ATA-TTATAAG---G---CATAT--TAA--CTGTCCCG-T-GC-TATATTATTTACAGTCATAATAAATTGTACTTTGATTGA-TTA-TAT--GAATG------TGTATGATTGTGTGTGTATGTAATTGTTAG---TGTAATGTC-ATA-TGTG-TAT-A-TCA-T--G--------TGTA--T-ATA-T--AAATGT-CTGAAAATAAAGCATTA--a
gi|8 : cGT------A--TA--TA----GA-GC-TACA-TC--AA-CTA-C-ATGT-A----CATG------TTA----A-----TAC-----T-TT-G--AAT--CAG-TATCAA-T----TTTTTTTT-TCCACTA------TATA-----TG-TTTAGTG--T-GTA-TCATAAG---G---TATAT--TGG--CTGTCGTG-T-GC-TATATTATTT------ACAGTAC----TA---TGATTGA-TTA-TAT--GAATG------TGTGTGATTG----------------TTAG---TGTAATGTC-ATA-TGTG-TAT-A-TTA-T--GTTTTAAAAT-----T-ATA-T--AAATGT-CTAAAAATAAAACATTA--TAAAAAaa
gi|9 : CTTCTGTTAGCTTCGAA------GTT-TATAT-GTTATT---CCA-GA-TCACAAGGCCCTAAGT-C-ATTTTTTCTGAGGCAGTG-A-TTTATCTAAG-TGA-CAC--AGAAATATGGAAAAAT-AC---TTTGTAA-ATGTGTTCC---ATT-CTA-AAGCCC-AAATATGTA-TGGC-AAGAA-T----GCAA-TTTACG-------------TAT-TTTTATGTACGTGTATA-A--AA-AT---------GTGA-TGA-AAAACCA-