lowQualScore : 11111111111111111111111111111111111111111111 22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 111111 1111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 22222222222222222222222222222222222222222222 4 4 777 1 66666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 4 22 777777777777 1 666 1 4 1 3333333 9999999999999 1 2 77777777777 1 1 33 2 66666666666 2 11 2 555555 4444 2 1 333 222 66666666666666666666666666666666666666666666 5555555555 666666666666666666 4444 2 2 4 1 4444 11 2222 1 2222 1111 2222 333333333 2222 11 1 1 999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 2222 1 11 11 2222 1 2 2 2 2 2 1 1 2 11 1 000000 222 33 11 1 44444444444444444444444 5555555555555555555555555555555555555555555555555555555555555555555555 3333333 111 11 11 1 2
lowQualScore : 99999999999999999999999999999999999999999999 0 0 000 6 7 55555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 6 6 0 33 444444444444 5 111 5 0 5 4444444 6666666666666 2 5 0 00000000000 5 4 5 55 0 6 99999999999 0 88 0 222222 2222 0 5 555 555 88888888888888888888888888888888888888888888 6666666666 444444444444444444 5555 0 0 0 5 3 2222 4 88 2222 7 3 2222 6666 2222 777777777 4444 44 3 3 777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 1111 0 33 88 8888 3 2 6 6 0 4 3 0 3 0 0 2 0 6 3 2 4 4 1 2 5 77 4 0 7 0 11 7 7 6 333333 55 7 333 7 6 00 6 88 3 6 0 77777777777777777777777 6 8888888888888888888888888888888888888888888888888888888888888888888888 7777777 7 999 88 7 88 3 7 3 9
lowQualScore : ............................................ . . ... . . ............................................................................................................................. . . . .. ............ . ... . . . ....... ............. . . . ........... . . . .. . . ........... . .. . ...... .... . . ... ... ............................................ .......... .................. .... . . . . . .... . .. .... . . .... .... .... ......... .... .. . . ....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... .... . .. .. .... . . . . . . . . . . . . . . . . . . . . . .. . . . . .. . . . ...... .. . ... . . .. . .. . . . ....................... . ...................................................................... ....... . ... .. . .. . . . .
lowQualScore : 00000000000000000000000000000000000000000000 0 0 000 0 0 00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 0 0 0 00 000000000000 0 000 0 0 5 5555555 0000000000000 5 5 0 55555555555 5 0 5 00 0 0 55555555555 0 00 0 555555 5555 0 0 000 555 55555555555555555555555555555555555555555555 0000000000 555555555555555555 5555 0 0 0 5 0 5555 0 33 7777 3 3 7777 0000 7777 333333333 0000 00 3 3 333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 2222 0 88 33 3333 3 5 0 0 0 0 0 0 0 0 0 5 0 0 0 5 0 0 5 5 5 00 0 0 3 7 00 3 3 7 777777 33 3 333 0 7 33 7 33 3 0 7 77777777777777777777777 7 0000000000000000000000000000000000000000000000000000000000000000000000 3333333 3 000 33 3 33 3 3 3 7
consensus : TAGTGGCCAGTATCCCAACGCGTATTTAAAAA---GGTTCTCACACTTGGACATAATAATGTGACAACACAAAAGGGCTGTTCTATAAAGGACGTTTTCATACGTGGCAGAGAATTACTCCAGTTTTTCCCTAATATGGACCTTAAATACACTACTTCTAAAGTCAAAGACAAAACCAGTATTGGATTAAACTATCTCCTCTATTCTAGGACTTTGATGACAAAGGCTTTTGACTCTTTGGAATGGATTTTTATTAGGCAAGCCGTTCCTTAACTCATTTCAAATGTTGGTGAGCTCACTTATTGAATGGTTTCCATTTACATTTTCATCTCTCGATATCCCAATACTANTTGTGTAAGTAAAGAATACAAACATGGTCATNTTATCAAGGTTGCTTTAGTCATTGAGAGGGCGTATGTAGGAACAGGAGTGATCCTCTGGGCACCGGCGTTATCCTCTCTTTCATCGATTACAGTACTAGAGCTAACTGGCAATTTCATTGAAAAGAAAAATGATTCTAACTTACTCGAAGAAGGCATANCTATNGG-GGGAAGAGAATAGAGNTATAGGGACAATCACTNCGACGATGATTCCATTTCTTACCTCCTTAGATGGACACTCGAACACTCNCTTAACGAGAGANCCAATGTGC--GTTA-T--TGACAAG-TT-T--AGTAG-TG-TCTCG--GGCCTGAAAC-TT-AATATTT---CAAA-ATCACAAGC-AG-TTT-T------GGA---TCG-GT-AG-T--TAAA-ANC---GGC-TCA-G--C-AG-AAA---C-T-CTGTGTCGTGANGCGACGCGAAT-CAATGGTCGCGGGCTAATGTNAA-GATAA-GTT--CA-AACTTC-TT------GGAATACAAC-TTTACCAAAA---ATC-T-C----GANGA-CATCGTAA--CGT----AATTAT-CAA--TCC----AAAA-T-----TTCAGCAATTAAAAGN---TTA-T--TAGG-ATCCTGG--GT-GG-------TAAAA----GAGA--TTTAANA--CCA--ATTAGG----AAATT--ACAA-TTATCAACAC--TAGC--T-CC-TAAGCC-G-CATACC-----CTTATTTTCAGC-TGT--GC-C------------GAATATANT----CG--ACGAA--AAATAAA------ATAT--TA----------TTT-CAAT-TCAT--ATGGG-GTTAT---------AAGGTAGAAAG---------AAATACACTCGTT----GGT-AG--TTATGAGG--AGGGTGGAT----TAAACAT-GATTCANTTGTCTCCTTTCAGTTTCNTACATCACGCTAGANATGGGTCAAACAGGTACCCTGNCAGAAAATGAGGGGATCGGGNAGCATTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTNTTTNTCAAAAGAAAANCTTCAANAGTTTGTGTTTTTTNNTGGNAATGATTTTTGGAGAGATGTTATTAAAGCGTTGATACANGTTAAAAAAAGTCCTGAACATGTATCAGACTAC-----CTGCGCTTAGATATTAGAAA---TGTTTGCTGTGTG-AAAAAATGGGCACTTTAT--TCAA-AATGGATCGAC-AATGGTGTTAAAA---GA-CAGAGGACCC-G-----TG-AT--GAA--AAC-G--------AAATA--TAGA-GCTTTAATG-A--CAAGGG-A-----GTGCTTGG--TA---CTAATAAC-TTTTT--AGACTATTTTC--ATGTGAT-ATCAAAAATA-CCTCAAAAGTCAA
Reference ( gi|2 ) : TAGTG-TCA-TATCC-AAC-CGTATTAAGAAAACAGGTTCTGA-AT---GACATAATAA-GTGACA-CACAAAAGGG---TTTTAAAAAGGACGTT--CATA---GG-GGAAAAT-ACTC--GTTT---CCTA-TATG-ACCTTAT-TA-ACTA--TCTAAAG--AAAGA-AAAAC-GGT-TTGGATTA--CTA---CTTCTATT---AGACTTTGA----AAAAGTTTTTGACTCTT-GGAATGGGATTTTATTAG-CAAG--GCTC-TTAAATCATTC--AATTTTGGTGA-CTCACTTATTAAATGGTT-CCAT--ACATTT--AT---TC----TTCCAATACTAGTTGTGTAA-TAAA---TA-A----TGGTCATTTTATCAAGGTT-CTTTAGTC-TTGAAAGGG-GT-TGTATAGACAGG-GTGATCCTCTGG-CAC-G----TATCTT----TTCATC-ATTACAGTA---GAGCTA-CTGGCAATTTCATTGAAAG--AAAATG-TT--AA-T-A-TC-AAG--GGCATAACTATTGGTGGGAAGAGAATA-AGTTA---GGACAAT-A-TGCA--GAT-ATTC-ATTTCT-AC-TCCT-AGATGGA-ACT-GAACACTCTCT----AAGAGAATCAATGTGC--GTTA-T--TGACAAG-TT-T--AGTAG-TG-TCTCA--GACCTGAAAC-TT-AATATTC---CAAA-GTCACAAGC-AG-TTT--------GGA---TTG-GT-AG----TAAA-ACT---GGT-TCA-G--C-AG-AAA---C-T-CTGGGTCCTGAT-T--TGCAAATACAA----TG-GG---A---TCAA-GATAA-GTT--CA-AACTTC-TT------GGAATA-AAT-TTTACCAAAA---ATC-T-T----GAAGA-TATCATAACATAT----AATTAT-TAA--TCT----AAAC-T-----TTCAGCAATTAAAAGG---TTA-T--TAGG-ATCCTGG--AT----------TAGAA----GAGA--TCTAACA--CCA--ATTGGG----AAATT--ACAA-TTATTAAAACTTTAGCACTGCC-TAAGCT-AATATACCGGTATTTTATTTTCAGC-TTT--GC-T------------GAATATACT----CG--ATGAA--AATTAAA------ATAT--TA----------TTT-AAAT-TCAT--ATGGG-GTTAT---------AAGGTGAAAAG---------AAATACACTCATT----GGT-AG--TTATGAGG--AGGGTGGAT----TAAACAT-GATTCACTTGCCCTCTTTT-GTTTCATATATCAAACTA-AAATGGGTTAAAC-GATA-CTTGGCA-AAAATAAAGGAGTTTGGCAGCATTGCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTATTTATCAAAAGAAAAACTTCAAGAGTTTGTATTTTTTATTGATAATGA-TTTTGGAGAGATGTTATTAAAGCGTTGATACAGGTTAAAAAAAGTCTTGAACATGTATCAGACTACCGTAGCTGTGCTTAGATATTAGAAA---TTTTTGCTGTGTGAAAAAAATGGGCACTTTAT--TCAA-AACGGACTGTC-AATGGTGTTAAAA---GATTAGAGGACCT-G-----TG-ATCGGAA--AATGG--------AAATAT-TAGATGCTTTAATGAAATTAAGGG-A-----GTGCTTGG--TA---CTAATAAC-TTTTT--AGACTATTTTC--ATGTGAT-ATCAAAAATACCCTTAAAAGTCAA
gi|5 : TAGTGGCCAGTATCCCAACGCGTATTTAAAAA---GGTTCTCACACTTGGACATAATAATGTGACAACACAAAAGGGCTGTTCTATAAAGGACGTTTTCATACGTGGCAGAGAATTACTCCAGTTTTTCCCTAATATGGACCTTAAATACACTACTTCTAAAGTCAAAGACAAAACCAGTATTGGATTAAACTATCTCCTCTATTCTAGGACTTTGATGACAAAGGCTTTTGACTCTTTGGAATGGATTTTTATTAGGCAAGCCGTTCCTTAACTCATTTCAAATGTTGGTGAGCTCACTTATTAAATGGTTTCCATTTACATTTT-ATCTCTC----TCCCAATACTAGT-GTGTAAGTAAA---TACA----TGGTCATTT-ATCAAGGTTGCTTTAGTCATTGAGAGGGCGTATGTAGGAACAGGAGTGATCCTCTGGGCAC-GGCGTTATCCTCTCTTTCATCGATTACAGTACTAGAGCTAACTGGCAATTTCATTGAAAAGAAAAATGATT--AACT-ACTC-AAGAAGGCATATCT-TTGG-GGGAAGAGAATA-AAGTATAGGGACAATCACTGCGACGATGATTCCATTTCTTACCTCCTTAGATGGA-ACTCGAACAC-CTCTTAACGAGAGATCCAATGTGCTGATTA-TCTTGACAAGATT-T--AGTAGCTGCTCTCATCGGCCTGAA---CT-AATATCCTATCAAA-ATCACAAGCTAG-TCTAT------GGAAAACTG-GTTAGGTGTTAAACACT---GGCCTCAAG--C-AG-AAA---CAT-CT
gi|1 : TCACTTATTGA-TGGTT-C-AT--ACATTTTCAT---TTGATATTCCAATACTATTTGTGTAA-TAAAGAATA-AAACATGG-CATATTATCAAGGTT--TTTAGTC-TTGAGAGGG----TGTA---ACAGG-GTGA--CTCTGA-CACCG----TATCTT----TTCATC-ATTA-AGTA---GAGCTA-C-GACAATTTCATTGAAA----AAATG-TTCTAA-TTA-TCGAAG--GGCA-AA-TATGGG-GGAAAGAGAATAGAGTT-----GACAAT-A-TTCA--GAT-A----ATTTCT--C-TCCT-AGATGGACACTTGAACACTCGCT----AAGAGAATCAATGTGT--GTTAAT--TG-CAAG-TTCT--AGTAG-TG-TCTCA--GGCCTGAAAT-TG-AATATTT---CAAA-ATCACAAGC-AGATTTTTCGTTGAGGA---TCGTGT-AGCT--TCAA-ATCGA-GGT-TCA-G--CTAG-AAATACC-TACTGTG-CCT-ATGT--TGCAAAT-CAA----CGCGGGCTA---TAAAGGATAATGTTTGCACAACTCCGTTTTAATGGAAACACAAC-TTTACCAAAACATATCGT-TAGCAGAATA--ATCATAAACTATTCAAAGTCATCCAAGTTCTTATCAAATAT-----TCCAGCAA-TAAAAGAGATTTA-TCCTAGGAATCCTGG--GTTAA-------TAGAA----AAGACGTCTAATACTCCAACATCTGG----AG-----ACA-------AACACTGTCGC----CCATAACCCGAATAGAC---------ATGATCAAC-TGT--GA-T------------AAAAATAATTTTGCGTAACAAA--AAATAAT------ATGTTCTA----------TTT-CAAT-TCAT--ATGGG-GTTAT---------A---T---AAG---------ACACGCACACAGG----AGT-AGAATTATGAGtgttggactgat
gi|3 : tggtagagagagaC--GTTA-T--TGATAAG-TT-TTGAGTTG-TC-TCTCG--CGCTT---ACGTTGAATCTTT---CAAAAGTCACAGGC-AA-TTT--------TGG---TTG-G--GG----CAAA-AATTCAGGC-TCA-GATC-TGAAAA---C-T-TT--GTTGTGAA-CGACGTGAAT--AATGGTTG-GG---AATGTTAA--AGAA-TTT--AA-GGCTTC-TT------TGAATATAACATTTA-CAAAA---ATC-TGC----GATGAGCATGGTTTCACGT----AATTAC-TAT--TCCG---AAAA-TGTGAATTC--CATTTAATCAT---TTAGT--TTGC-ATCCTGGAAATAGGGTGGATATAAAACCGCGAGA--CTTAACA--CCA----TAGGTTTAAAATTGGACAATTTATCAACAC--TAGCCCTTCC-CAAGCT---CCTTCCA----CTTATTTTCCGCATGTGGGCGT------------G-ATCCAC-----CA--AAAAAC-AATTGGATAGATGATAT--CAACAGAACATTTTT-CAATATTATTTATGGGTGATAC---------AAAGTAGAAAGGTTGAAAATAAATACAATTGTTTTCAGGTAAA--TTATGAGGCAAGGGGGGATGGGCTTAATATCGGTTCAGTTGTCTCCTTTCAATTTCTTACATCAAGTTAGAAATGGGTCAAACAGGTA-CCTGTCAGAAAATGAGGGAATTGGGCAcaaatacacatccctatatattaatcatgttgtggaggaggtgagactcacacacgtggaatatcacgaactttagactcatccgtgttttgtttcgattacacacagaatggaatggtgtaaaaggctgtagtagaagtatggggcaatgatagagattaacggtagtctggcagctatattatgcttaaaatggtcaatttcacccttaagatatatagatttcaattttttttttcaaaagaaaagtttcaagagtttgtgtttttttgtgataatgattttggagagatttaattaagcgttgatacggttaaaaaaagtctgaaatgtatcagactactgtgctagatataagaaaatttttttgctgtgtgaaaaaatggcactttattcaacaatggactgacaaatggtgttaaaagattagagacctggtatatgatatgaaataatagatgctttaatgaatcaagggagtgcttggtaactctaataactttatagacattttcatgtgataatcaaaaatacatcacaaatcaaaagatattattggattgaaagaaaggtagaagaataaaataatgaattaatgatgttcgtgcataatttattgtcaacatgtaattctaaatatttatcaaattttgaaaagaaaaggagtttaatagccccaatttaaaa
gi|4 : AA-GATAA-GTT--CA-AAGTTT-TT------GGAATA-AAT-TTTACCAAAA---ACC-T-T----GAGGA-TATCATAA---------AATTAT-CAA--TCC----AAAA-T-----TTCAGCAATTAAAAGG---TTA-T--TAGG-ATCCTGG--GG----------TGAAA----GAGA--TTTAAAA--TCA--ATTAGGAA--AAATT--ACAA-TTATTAAAAC-TTAGCA-TGCC-TAAGCT-G--ATACC-----TTTATTTTCAGC-TTT--GC-CTGACCTTCCAAAGAATATGTT----GG--ATGAAATAAATAAA------ATAT--TT----------TTTCAAAT-TCAT--TTGAG-GTTATAAAACAGAAAAGGTAAAAAG---------AAATACACTCATT----GGT-AG--TTATGAGG--AGGGTGGAT----TAAACAT-GATTCACTTGTCTTCTTTT-GTTTCATATATCACACTA-ACATGGGTTAAAC-GATACCTTAGCA-AAAATAAAGGGATCTGGAAGCATTaaactcttgtgtatgcatccaagtacttgtaaacctttaaattgtgtgattctatgttttatttgggcaaagaacaaatatgtgattattgcatggcaagttgtaatgttgttctggtaagagatgttttatagaagtggtagcaaaagcttataacaaaagttacttttgaatgtgtctaggaatacttacaattagacataaaggaaactttgttgatagtaaaaaatgggaatttttagtacaaaatggtgggaaataaaggtatcaaaacctttagacattggacttttttaaagtaaaacaagaaatggaactttttaaatgttttaa
gi|17 : gtgtaTT----GGT-AG--TTATGAGG--AGGGTGGAT----TAAACAT-CATTCAtggtacaatgcatgttcaaccttaaaaatatagattttattttttatttatcaaaagaaaatcttcaatagtttgtatttttattggaaatgatttttggagagatgttataaaagcattgatacaagttaaaaaagacctgatcatgtatcacactatctacactcaggtattagaaatgtttctgtgtgaaaaagtgggcacgttataatcaaaatggatcgacaacagaggacctggtgtatggaaataattgcgtgcaataaagatctagaagttttaatgaataagggcagggatgtgcttggttttctaaacttttttagactattttcatatgtgatatcaaaatgtctcaaaagtcaaagagatattattacattgacaaga
gi|4 : TTTTATTTATCAAAAGAAAATCTTCAATAGTTTGTA-TTTTTATTGGAAATGATTTTTGGAGAGATGTTATAAAAGCATTGATACAAGTT-AAAAAAGACCTGATCATGTATCACACTAT-----CTACACTCAGGTATTAGAAA---TGTTT-CTGTGTG-AAAAAGTGGGCACGTTATAATCAA-AATGGATCGAC-AA-----------------CAGAGGACCTGG-----TGTAT-GGAAATAATTGCGTGCAATAAAGATCTAGAAGTTTTAATGAA--TAAGGGCAGGGATGTGCTTGGTTTT---CTA--AACTTTTTT--AGACTATTTTCATATGTGAT-ATC-AAAATG-TCTCAAAAGTCAAt
gi|1 : gtgtaaagataagttcaaagtttttggaataaattttaccaaaaaccttgaggatatcataaaattatcaatccaaaatttcagcaattaaaaggttattaggatcctggggtgaaagagatttaaaatcaattaggaaaaattacaattattaaaacttagcatgcctaagctgatacctttattttcagctttgcctgaccttccaaagaatatgttggatgaaataaataaaatattttttcaaattcatttgaggttataaaacagaaaaggtaaaaagaaatacactcattggtagttatgaggagggtggattaaacatgattcacttgtcttcttttgtttcatatatcacactaacatgggttaaacgataccttagcaaaaataaagggatctggaagcatttggtacaatgcatgttcaaccttaaaaatatagattttattTTTTTTTTTTCAAAAGAAAAGTTTCAAGAGTTTGTGTTTTTTTGTGATAATGA-TTTTGGAGAGATTTAATT-AAGCGTTGATAC-GGTTAAAAAAAGTC-TGAA-ATGTATCAGACTA------CTGTGC-TAGATATAAGAAAATTTTTTTGCTGTGTG-AAAAAAT-GGCACTTTAT--TCAACAATGGACTGACAAATGGTGTTAAAA---GATTAGA-GACCT-GGTATATG-AT--------AT-G--------AAATAA-TAGATGCTTTAATG-AATCAAGGG-A-----GTGCTTGG--TAACTCTAATAAC-TTTAT--AGAC-ATTTTC--ATGTGATAATCAAAAATA-CATCACAAATCAAagagatattattacattgacaaga
gi|8 : tggtagagagagatcacttattgatggttcatacattttcatttgatattccaatactatttgtgtaataaagaataaaacatggcatattatcaaggtttttagtcttgagagggtgtaacagggtgactctgacaccgtatcttttcatcattaagtagagctacgacaatttcattgaaaaaatgttctaattatcgaagggcaaatatgggggaaagagaatagagttgacaatattcagataatttctctcctagatggacacttgaacactcgctaagagaatcaatgtgtgttaattgcaagttctagtagtgtctcaggcctgaaattgaatatttcaaaatcacaagcagatttttcgttgaggatcgtgtagcttcaaatcgaggttcagctagaaatacctactgtgcctatgttgcaaatcaacgcgggctataaaggataatgtttgcacaactccgttttaatggaaacacaactttaccaaaacatatcgttagcagaataatcataaactattcaaagtcatccaagttcttatcaaatattccagcaataaaagagatttatcctaggaatcctgggttaatagaaaagacgtctaatactccaacatctggagacaaacactgtcgcccataacccgaatagacatgatcaactgtgataaaaataattttgcgtaacaaaaaataatatgttctatttcaattcatatggggttatataagacacgcacacaggagtagaattatgagcaaatacacatccctatatattaatcatgttgtggaggaggtgagactcacacacgtggaatatcacgaactttagactcatccgtgttttgtttcgattacacacagaatggaatggtgtaaaaggctgtagtagaagtatggggcaatgatagagattaacggtagtctggcagctatattatgcttaaaatggtcaatttcacccttaagatatatagatttcaaTGCTATTAAAGCAATAGCAAACGTTAAGAAAAGTTCTGAACATGTATTAGACTAC-----TTGAACTTAGATATTAGAAA---TGTTTGCTGTGT-AAAAAAATGGGAAATTTCT--TCTA-AATGGGTTGGT-AATGGTGTTAAAATCTAA--AGAGGTCCC-G-----AT-CTCTGAA--AACAG--------AAATA---------------------AAAGA-A-----GTGCTTGG--CA---ATAATA---TTTTTAAAGATTATTTTC--ATGTAGT-ATCAAATATACCCTAAAAAGTCAAaagatattattggattgaaagaaaggtagaagaataaaataatgaattaatgatgttcgtgcataatttattgtcaacatgtaattctaaatatttatcaaattttgaaaagaaaaggagtttaatagccccaatttaaaa
10 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|6 ): TAGGAATTGAGAGCCCCAACACTAAAAACAAAATAAGTGGGGAAACTTTATTAGATGAATCCATATCTGATAAAGACTGGAGATTTTATTTTGTAAATGCATCATAATGTACAAAAGGATACAAAATGAATTTATTTTCAATACCGAATCTGATGAATTATATTACTACCAACTCTTTTCTTCATAAAATTAAAATTTCAGATAATATTTGCGTATTTTTTTGTACTGTGAAGCAGAAACAATAACTCGCATATTTTATGATTGTGTACACATCAACTTATTTTGAATGATTTTTGTGCAGTGGTTTAATGTATAAGATATCAAAAAGAAAATTGTTTTACTCGGTAATAATGAAGAAAAGCTGTTAGAAAATTGTCTTTTATTGGTTGCAGAAAGTGTATTATTTTTTTAAAATCACAATTTAAGGCCTTAGCCCAAAAATTTTCCGAGGCAGTGACTTTATTTAAGTATTTAGAAATAGGAATTACTGTGAAAATGTATTCAAATGTAAATCCAAAATACTTGCAAAGGGCAATATATGATATTGTACAAAACAAGTAAGAATGGAAAACCAGGTATATATAAG
Unaligned ( gi|7 ): AAAAAGTGGGAAACTTATATAGATAACCTTATCTGACAAAGACTGGAAATTTTATTTTTAAATGTTTTCGTTATGTACGAAGGATACAAAAATAATTTATTATTCAAATACGCGAAATATCTGATGAACTATAATTGCTACCAACTCCTTATCATTTAAAATCAAACTTTCTGATAGAAGATTTTTGTGTTACTTTGTTACACATCCTGAGCAGAAACAATTAACTTGTACCATACTTCTCACATGATTTGATGTGGGATAGGTCCAATCAAGAGTGTTATTTGGAGATATGACTTTATAGGTGAGCTGGAATTTAATGATAATTCTGAAAAACATGATTAGATTAAATACATCAAAAAGCAATTAATAACTTGTGTTGGTGTATATACTTTTGTTGTAATCA
Unaligned ( gi|9 ): TTACATTGCTATAACTCGTTCCTTCACAAACTTAAACTTGTAGAAAATGACAAATGTTCTCTTTGTAAATGTGAAAGAGAAACAATTTCTCATATATTTATGATTGTAATATCACCCTAGCCTTTTGGGGAGATTTTGTGAAATGGAACAGTGCTGTTGAAAAGGATTATAAGATTTCGAAAAGAATTGTATTACTTGGANNNNNNNNNNNNNNNNNNNNNNNNNAATATATCTTTATTA
Unaligned ( gi|10 ): AAGAGAGATATATTATTGCATTGAAAGAAGGTAAATAGATGCAAACGATGAACATACTAAAAATAATAATTATTGTCAACATGTAATATGAAATATTTATATCAAATTTTTAAAAGAAAGGAGATTTATAGCCCAACATAAA
Unaligned ( gi|11 ): AGAGAGATATATTATTGCATTGAAAGAAGGTAAAATAGATGCAAACGATGAACATACTAAAAAATAATAATTATTGTCAACATGTAATATGAATATTTATATCAAATTTTTAAAAGAAAGGAGATATACCCCAACATAAAA
Unaligned ( gi|12 ): TATTATTGCATTGAAAGAAGGTAAAATAGATGCAAACGATGAACATACTAAAAATAATAATTATTGTCAACATGTAATATGAAATATTTATATCAAATTTTAAAAGAAAGGAGATTATAGCCCCAACATAAA
Unaligned ( gi|13 ): AGCTAGGATCAGAATAATATGAACATTCTGAAATATATCTGTTGTCCCATAAAAATGTTAGTGAAATTGTAGATACGAAATATTTATATAAACT
Unaligned ( gi|14 ): GAGATATTATTGGATTGAAAGAAGGTAGGATAGATAAAAATAATGAAGTACGGAATGTGTCGTCAACATGTAATTCGAAATATTTATATCAA
Unaligned ( gi|15 ): AAGGATACAAAAATAATTTATTTTCAATAACGAATACTGATTAATTATATTGCTACCAACTCCTTTCTTC
Unaligned ( gi|16 ): TGAAAATGTATTTGAATGTAAATCTAAAATACTAAGCAAATGGGCAAATAT
Alignments
lowQualScore : 11111111111111111111111111111111111111111111 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 1 1 1 1 333 222222 1 1 222 11 222 1 1 11 222 1 1 11 1 11 11 1 1 1 11 222 222 2222 1 1 11 1 11 2 33 7777777777777 6666666666666 1 2 2 1 2222222 2 1 4444444444444444 2 222 2 2222 66666666666666666666 1 1 1 444444 555555555555555555 2222 11 2 1 44444 11 1111 1 1111 1 1 111 111111 111 1 1 11 6666666666666666666666666666666666666666 1 1 11 1 99999999999999999999999999999999999999999999999999 11 1 11 1 1 222222 1 1 1 1 22222 222 111 55555555555 1 11 222222 1 22222 1111 1111 1 55555555555555555 2222 11 11 111 3333 11 11 555555555555555 3333333333333333 1 00000000000000000000000000000000000000000000 11111 1111 1 1 11 1 44444444444444444444444444444 1111 11 11 2222 1 22 2 2 2 2 7777777777777777777777777777777777777777777777777777777777777777777777777777 22 11 1111 111 22222 222222 11 11111 11 111111 1111 22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 2222222 2222222 1 11 11 1 2
lowQualScore : 5 5 5 5 4 555 2 555555 5 5 000 4 88 000 5 5 88 111 5 5 99 5 88 88 5 5 5 88 111 111 3333 5 4 5 77 5 2 88 2 6 0 7 3 00 2222222222222 0 88 8888888888888 7 4 3 3 2 9999999 3 7 6 2 6666666666666666 3 6 111 3 5555 55555555555555555555 4 7 1 3 2 111111 000000000000000000 7777 44 3 2 7 1 55555 11 33 4444 3 0 4444 0 0 555 2 555555 777 0 0 33 2222222222222222222222222222222222222222 0 0 33 0 44444444444444444444444444444444444444444444444444 1 22 0 33 0 0 888888 9 0 2 0 0 55555 1 222 555 22222222222 0 33 555555 0 55555 3 3 8888 4444 0 00000000000000000 1111 33 1 33 777 1 5555 3 33 33 4 2 999999999999999 5555555555555555 0 2 99999999999999999999999999999999999999999999 2 88888 4444 0 0 33 0 22222222222222222222222222222 2 7777 8 11 33 1111 0 1 0 44 1 0 77 3 1 0 3 0 3 0 1 3 0 0 0 77 1 6666666666666666666666666666666666666666666666666666666666666666666666666666 1 1 1 1 0 999 1 55 33 0 4444 1 11 444 0 33333 3 333333 1 0 1 11 88888 8 8 11 111111 8 555 888 4444 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 6666666 3333333 3 3 0 33 3 33 0 3 0 0
lowQualScore : . . . . . ... . ...... . . ... . .. ... . . .. ... . . .. . .. .. . . . .. ... ... .... . . . .. . . .. . . . . . .. ............. . .. ............. . . . . . ....... . . . . ................ . . ... . .... .................... . . . . . ...... .................. .... .. . . . . ..... .. .. .... . . .... . . ... . ...... ... . . .. ........................................ . . .. . .................................................. . .. . .. . . ...... . . . . . ..... . ... ... ........... . .. ...... . ..... . . .... .... . ................. .... .. . .. ... . .... . .. .. . . ............... ................ . . ............................................ . ..... .... . . .. . ............................. . .... . .. .. .... . . . .. . . .. . . . . . . . . . . . . .. . ............................................................................ . . . . . ... . .. .. . .... . .. ... . ..... . ...... . . . .. ..... . . .. ...... . ... ... .... ............................................................................................... ....... ....... . . . .. . .. . . . .
lowQualScore : 0 0 0 0 0 000 5 000000 5 5 555 0 55 555 0 5 00 000 5 0 55 0 00 00 0 0 5 55 000 000 5555 5 0 0 55 0 5 00 5 7 7 3 7 77 0000000000000 7 33 7777777777777 3 0 3 7 0 3333333 7 3 7 0 7777777777777777 3 7 333 7 3333 77777777777777777777 0 3 0 3 0 333333 000000000000000000 7777 77 3 0 3 0 00000 77 88 8888 2 0 8888 0 0 888 5 222222 555 0 0 22 2222222222222222222222222222222222222222 0 0 88 0 88888888888888888888888888888888888888888888888888 0 55 0 88 0 0 888888 0 0 5 0 0 00000 0 000 888 88888888888 0 88 222222 0 00000 2 2 5555 8888 0 22222222222222222 2222 88 0 88 000 2 0000 2 88 22 2 5 222222222222222 5555555555555555 0 5 88888888888888888888888888888888888888888888 0 55555 5555 0 0 88 0 00000000000000000000000000000 0 0000 0 00 88 2222 0 0 7 33 0 7 33 3 0 7 7 7 3 7 0 3 7 7 7 33 0 0000000000000000000000000000000000000000000000000000000000000000000000000000 0 0 0 0 7 333 0 55 88 8 8888 0 88 000 8 44444 2 222222 4 8 4 00 00000 0 0 22 888888 0 444 444 8888 33333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 0000000 5555555 2 2 0 88 2 88 0 2 0 2
consensus : TAGTGGCCAGTATCCCAACGCGTATTNAGAAAACAGGTTCTNACACTTGGACATAATAATGTGACAACACAAAAGGGCTGTTCTANAAAGGACGTTTTCATACGTGGCGGAGAATTACTCCAGTTTTTCCCTAATATGGACCTTANATACACTACTTCTAAAGTCAAAGACAAAACCGGTATTGGATTAAACTATCTCCTCTATTCTAGGACTTTGATGACAAAGGCTTTTGACTCTTTGGAATGGGNTTTTATTAGGCAAGCCGCTCCTTAANTCATTCCAAATNTTGGTGAGCTCACTTATTAAATGGTT-CCAT--ACATTTT-ATCT-TC----TTCCAATACTAGTTGTGTAA-TAAA-AATA---ACATGGTCAT-TTATCAAGGTT-CTTTAGTC-TTGAGAGGGCGT-TGTA-GAACAGG-GTGATCCTCTGGGCACCG--GTTATCCT--CTTTCATC-ATTACAGTA-TAGAGCTA-CCGGCAATTTCATTGAAAG-AAAAATG-T-CTAA--TA-TC-AAG--GGCATA-CTATTGG-GGGAAGAGAATAGAGTTA---GGACAAT-ACTGCGACGAT-ATTC-ATTTCT-ACCTCCTTAGATGGA-ACTCGAACACTCTCT----AAGAGAATCAATGTGC--GTT-A--TTGACAAG-TT-T--AGTAG-TG-TCTCA--GGCCTGAAAC-TT-AATATT---TCAAAA-TCACAAGC-AG-TTT-T-------GGA--------TNG-GTAG-TTAAA-ACT-AGG-CTC-AG--C-AGAAA---C-T-CTGTGTCGTGAT-C--CGCGAAT-CAATGG-CG--GG--A-TGTNAA-GATAA-GTT--CA-AACTTC-TT------GGAATACAAC-TTTACCAAAA-ATCT-CG-----AGGA-T-ATCA--TAA------C--GTAATTAT-CAA--TC----C-AAA-AT-----TTCAGCAATTAAAAG---NTTA-T--TAGG-ATCCT-------GGG-TGG---TAGAA----GAGA--TCTAACA--CCA--ATTAGG----AAATT--ACAA-TTATTAANACT-TA--G--C---TGCCTAAGCT-GNATACN-----CTTATTTTCAGC-TNTG--------CC------------GAANATANT----C-----G--ACGAA--A--AATAAAATAT--TATTTC-AAT-TCA--TATGGG-GTTAT---------AAGGTAAAAAG---------AAATACACTCGTT----GGT-AG--TTATGAGG--AGGGTGGAT----TAAACAT-GATTCACTTGTCTTCTTTC-GTTTCATATATCAAACTA-AAATGGGTTAAAC-GATA-CTTGGCA-AAAATAAAGGAATTTGGCAGCATTGCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTATTTATCAAAAGAAAANCTTCAAGAGTTTGTATTTTTTATTGGTAATGAT-TTTTGG--AGAGATGTTATTA---AAGCGTTGATACAGGTT---AAAAAAAGTC----CTGAACATGTATCAGACTAC-----CTGCGCTTAGATATTA--GAAA---TNTTTGCTG-T-GTG-AAAAAATGGGCACTTT--AT--TCAA-AATGGATTGGC-AAT---GGTGTTAAA------A--GATCAGAGGAC--CT-G-----TG-A----T--G-AAAAC-GA--------AAT-A------TAG-ATGCTTT---AATG-AA--TAAGGG-A-----GTGCTTGG--TA---CTAATAAC-TTTTT--AGACTATTTTC--ATGTGAT-ATCAAAAATACCCTCAAAAGTCAA
Reference ( family-828 ) : TAGTGGCCAGTATCCCAACGCGTATTTAAAAA---GGTTCTCACACTTGGACATAATAATGTGACAACACAAAAGGGCTGTTCTATAAAGGACGTTTTCATACGTGGCAGAGAATTACTCCAGTTTTTCCCTAATATGGACCTTAAATACACTACTTCTAAAGTCAAAGACAAAACCAGTATTGGATTAAACTATCTCCTCTATTCTAGGACTTTGATGACAAAGGCTTTTGACTCTTTGGAATGGATTTTTATTAGGCAAGCCGTTCCTTAACTCATTTCAAATGTTGGTGAGCTCACTTATTGAATGGTTTCCATTTACATTTTCATCTCTCGATATCCCAATACTANTTGTGTAAGTAAAGAATACAAACATGGTCATNTTATCAAGGTTGCTTTAGTCATTGAGAGGGCGTATGTAGGAACAGGAGTGATCCTCTGGGCACCGGCGTTATCCTCTCTTTCATCGATTACAGTACTAGAGCTAACTGGCAATTTCATTGAAAAGAAAAATGATTCTAACTTACTCGAAGAAGGCATANCTATNGG-GGGAAGAGAATAGAGNTATAGGGACAATCACTNCGACGATGATTCCATTTCTTACCTCCTTAGATGGACACTCGAACACTCNCTTAACGAGAGANCCAATGTGC--GTT-A--TTGACAAG-TT-T--AGTAG-TG-TCTCG--GGCCTGAAAC-TT-AATATT---TCAAAA-TCACAAGC-AG-TTT-T-------GGA--------TCG-GTAG-TTAAA-ANC--GG-CTC-AG--C-AGAAA---C-T-CTGTGTCGTGANGCGACGCGAAT-CAATGGTCGCGGGCTAATGTNAA-GATAA-GTT--CA-AACTTC-TT------GGAATACAAC-TTTACCAAAA-ATCT-CG-----ANGA-C-ATCG--TAA------C--GTAATTAT-CAA--TC----C-AAA-AT-----TTCAGCAATTAAAAG---NTTA-T--TAGG-ATCCT-------GGG-TGG---TAAAA----GAGA--TTTAANA--CCA--ATTAGG----AAATT--ACAA-TTATCAACAC--TA--G--C---T-CCTAAGCC-GCATACC-----CTTATTTTCAGC-TGTG--------CC------------GAATATANT----C-----G--ACGAA--A--AATAAAATAT--TATTTC-AAT-TCA--TATGGG-GTTAT---------AAGGTAGAAAG---------AAATACACTCGTT----GGT-AG--TTATGAGG--AGGGTGGAT----TAAACAT-GATTCANTTGTCTCCTTTCAGTTTCNTACATCACGCTAGANATGGGTCAAACAGGTACCCTGNCAGAAAATGAGGGGATCGGGNAGCATTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTNTTTNTCAAAAGAAAANCTTCAANAGTTTGTGTTTTTTNNTGGNAATGAT-TTTTGG--AGAGATGTTATTA---AAGCGTTGATACANGTT---AAAAAAAGTC----CTGAACATGTATCAGACTAC-----CTGCGCTTAGATATTA--GAAA---TGTTTGCTG-T-GTG-AAAAAATGGGCACTTT--AT--TCAA-AATGGATCGAC-AAT---GGTGTTAAA------A--GA-CAGAGGAC--CC-G-----TG-A----T--G-AAAAC-GA--------AAT-A------TAG-A-GCTTT---AATG-A---CAAGGG-A-----GTGCTTGG--TA---CTAATAAC-TTTTT--AGACTATTTTC--ATGTGAT-ATCAAAAATA-CCTCAAAAGTCAA
gi|1 : GAGATCACTTATTGA-TGGTT--CAT--ACATTTTCATTT---GATATTCCAATACTATTTGTGTAA-TAAAGAATA-AAACATGG-CATATTATCAAGGTT--TTTAGTC-TTGAGAGGGTGT-------AACAGG-GTGA--CTCT-GACACCG----TATC----TTTTCATC-ATTA-AG---TAGAGCTA--CGACAATTTCATTGA----AAAAATG-TTCTAA-TTA-TCGAAG--GGCAAA--TATGGG-GGAAAGAGAATAGAGTT-----GACAAT-ATTCAGATA--------ATTTCT---CTCC-TAGATGGACACTTGAACACTCGCT----AAGAGAATCAATGTGT--GTTAA--TTG-CAAG-TTCT--AGTAG-TG-TCTCA--GGCCTGAAAT-TG-AATATT---TCAAAA-TCACAAGC-AGATTT-TTCGTTGAGGA--------TCGTGTAGCTTCAA-ATCGAGG-TTC-AG--CTAGAAATACC-TACTGTGCC-T-ATGT--TGCAAAT-CAA----CGCGGGCTA---TAAAGGATAATGTTTGCACAACTCCGTTTTAATGGAAACACAAC-TTTACCAAAACATAT-CGTTAGCAGAA-TAATCA--TAAACTATTC--AAAGTCATCCAAGTTCTTATC-AAATAT-----TCCAGCAA-TAAAAGAGATTTA-TCCTAGGAATCCT-------GGGTTAA---TAGAA----AAGACGTCTAATACTCCAACATCTGG----AG-----ACA-------AACAC--TGTCG--C---C-CATAACCC-GAATAGA-----C--ATGATCAAC-TGTG--------AT------------AAAAATAATTTTGC-----GTAACAAA--A--AATAATATGTTCTATTTC-AAT-TCA--TATGGG-GTTAT---------A---T---AAG---------ACACGCACACAGG----AGT-AGAATTATGAG
gi|1 : tggtagagaTTTTTTTTTTCAAAAGAAAAGTTTCAAGAGTTTGTGTTTTTTTGTGATAATGA--TTTTGG--AGAGATTTAATT----AAGCGTTGATAC-GGTT---AAAAAAAGT-----CTGAA-ATGTATCAGACTA------CTGTGC-TAGATATAA--GAAAATTTTTTTGCTG-T-GTG-AAAAAAT-GGCACTTT--AT--TCAACAATGGACTGACAAAT---GGTGTTAAA------A--GATTAGA-GAC--CT-GGTATATG-A----T-------AT-GA--------AATAA------TAG-ATGCTTT---AATG-AAT-CAAGGG-A-----GTGCTTGG--TAACTCTAATAAC-TTTAT--AGAC-ATTTTC--ATGTGATAATCAAAAATA-CATCACAAATCAAcaaatacacatccctatatattaatcatgttgtggaggaggtgagactcacacacgtggaatatcacgaactttagactcatccgtgttttgtttcgattacacacagaatggaatggtgtaaaaggctgtagtagaagtatggggcaatgatagagattaacggtagtctggcagctatattatgcttaaaatggtcaatttcacccttaagatatatagatttcaattttttttttcaaaagaaaagtttcaagagtttgtgtttttttgtgataatgattttggagagatttaattaagcgttgatacggttaaaaaaagtctgaaatgtatcagactactgtgctagatataagaaaatttttttgctgtgtgaaaaaatggcactttattcaacaatggactgacaaatggtgttaaaagattagagacctggtatatgatatgaaataatagatgctttaatgaatcaagggagtgcttggtaactctaataactttatagacattttcatgtgataatcaaaaatacatcacaaatcaaaagatattattggattgaaagaaaggtagaagaataaaataatgaattaatgatgttcgtgcataatttattgtcaacatgtaattctaaatatttatcaaattttgaaaagaaaaggagtttaatagccccaatttaaaa
gi|17 : tggtagagagagatcacttattgatggttcatacattttcatttgatattccaatactatttgtgtaataaagaataaaacatggcatattatcaaggtttttagtcttgagagggtgtaacagggtgactctgacaccgtatcttttcatcattaagtagagctacgacaatttcattgaaaaaatgttctaattatcgaagggcaaatatgggggaaagagaatagagttgacaatattcagataatttctctcctagatggacacttgaacactcgctaagagaatcaatgtgtgttaattgcaagttctagtagtgtctcaggcctgaaattgaatatttcaaaatcacaagcagatttttcgttgaggatcgtgtagcttcaaatcgaggttcagctagaaatacctactgtgcctatgttgcaaatcaacgcgggctataaaggataatgtttgcacaactccgttttaatggaaacacaactttaccaaaacatatcgttagcagaataatcataaactattcaaagtcatccaagttcttatcaaatattccagcaataaaagagatttatcctaggaatcctgggttaatagaaaagacgtctaatactccaacatctggagacaaacactgtcgcccataacccgaatagacatgatcaactgtgataaaaataattttgcgtaacaaaaaataatatgttctatttcaattcatatggggttatataagacacgcacacaggagtagaattatgagcaaatacacatccctatatattaatcatgttgtggaggaggtgagactcacacacgtggaatatcacgaactttagactcatccgtgttttgtttcgattacacacagaatggaatggtgtaaaaggctgtagtagaagtatggggcaatgatagagattaacggtagtctggcagctatattatgcttaaaatggtcaatttcacccttaagatatatagatttcaaTT----GGT-AG--TTATGAGG--AGGGTGGAT----TAAACAT-CATTCAaagatattattggattgaaagaaaggtagaagaataaaataatgaattaatgatgttcgtgcataatttattgtcaacatgtaattctaaatatttatcaaattttgaaaagaaaaggagtttaatagccccaatttaaaa
gi|2 : TAGTG-TCA-TATCC-AAC-CGTATTAAGAAAACAGGTTCTGA-AT---GACATAATAA-GTGACA-CACAAAAGGG---TTTTAAAAAGGACGTT--CATA---GG-GGAAAAT-ACTC--GTTT---CCTA-TATG-ACCTTAT-TA-ACTA--TCTAAAG--AAAGA-AAAAC-GGT-TTGGATTA--CTA---CTTCTATT---AGACTTTGA----AAAAGTTTTTGACTCTT-GGAATGGGATTTTATTAG-CAAG--GCTC-TTAAATCATTC--AATTTTGGTGA-CTCACTTATTAAATGGTT-CCAT--ACATTT--AT---TC----TTCCAATACTAGTTGTGTAA-TAAA---TA-----ATGGTCATTTTATCAAGGTT-CTTTAGTC-TTGAAAGGG-GT-TGTATAGACAGG-GTGATCCTCTGG-CAC----GT-ATCTT----TTCATC-ATTACAGTA---GAGCTA-CTGGCAATTTCATTGAAAG--AAAATG---TTAA--TA-TC-AAG--GGCATAACTATTGGTGGGAAGAGAATA-AGTTA---GGACAAT-A-TGCA--GAT-ATTC-ATTTCT-AC-TCCT-AGATGGA-ACT-GAACACTCTCT----AAGAGAATCAATGTGC--GTT-A--TTGACAAG-TT-T--AGTAG-TG-TCTCA--GACCTGAAAC-TT-AATATT---CCAAAG-TCACAAGC-AG--TT-T-------GGA--------TTG-GTAG--TAAA-ACT--GG-TTC-AG--C-AGAAA---C-T-CTGGGTCCTGATT---TGCAAATACAATGG--G---------ATCAA-GATAA-GTT--CA-AACTTC-TT------GGAATA-AAT-TTTACCAAAA-ATCT-TG-----AAGA-T-ATCA--TAA------CATATAATTAT-TAA--TC----T-AAA-CT-----TTCAGCAATTAAAAG---GTTA-T--TAGG-ATCCT-------GGA-T-----TAGAA----GAGA--TCTAACA--CCA--ATTGGG----AAATT--ACAA-TTATTAAAACTTTA--GCAC---TGCCTAAGCTAATATACCGGTATTTTATTTTCAGC-TTTG--------CT------------GAATATACT----C-----G--ATGAA--A--ATTAAAATAT--TATTTA-AAT-TCA--TATGGG-GTTAT---------AAGGTGAAAAG---------AAATACACTCATT----GGT-AG--TTATGAGG--AGGGTGGAT----TAAACAT-GATTCACTTGCCCTCTTTT-GTTTCATATATCAAACTA-AAATGGGTTAAAC-GATA-CTTGGCA-AAAATAAAGGAGTTTGGCAGCATTGCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTATTTATCAAAAGAAAAACTTCAAGAGTTTGTATTTTTTATTGATAATGA--TTTTGG--AGAGATGTTATTA---AAGCGTTGATACAGGTT---AAAAAAAGTC----TTGAACATGTATCAGACTACCGTAGCTGTGCTTAGATATTA--GAAA---TTTTTGCTG-T-GTGAAAAAAATGGGCACTTT--AT--TCAA-AACGGACTGTC-AAT---GGTGTTAAA------A--GATTAGAGGAC--CT-G-----TG-A----TCGG-AAAATGGA--------AAT-AT-----TAG-ATGCTTT---AATG-AAATTAAGGG-A-----GTGCTTGG--TA---CTAATAAC-TTTTT--AGACTATTTTC--ATGTGAT-ATCAAAAATACCCTTAAAAGTCAAt
gi|3 : C--GTT-A--TTGATAAG-TT-TTGAGTTG-TC-TCTCG--CGCTT---ACGTTGAATCTT---TCAAAAGTCACAGGC-AA-TTT-T-------GGT--------TGG-G--G-CAAAA-ATTCAGG-CTC-AGATC-TGAAA---A---CTTTGTTGTGAA-CGACGTGAAT--AATGGTTG--GG--AATGTTAA--AGAA-TTT--AA-GGCTTC-TT------TGAATATAACATTTAC-AAAA-ATCTGCG-----ATGAGC-ATGGTTTCA------C--GTAATTAC-TAT--TC----CGAAA-ATGTGAATTC--CATTTAATCA---TTTAGT--TTGC-ATCCTGGAAATAGGG-TGGATATAAAACCGCGAGA--CTTAACA--CCA----TAGGTTTAAAATTGGACAATTTATCAACAC--TA--G--CCCTT-CCCAAGCT-CCTTCCA-----CTTATTTTCCGCATGTGGGCGTGATCCACCA--------AAAAACAAT----TGGATAG--ATGAT--ATCAACAGAACAT--T-TTTC-AATATTATTTATGGGTGATAC---------AAAGTAGAAAGGTTGAAAATAAATACAATTGTTTTCAGGTAAA--TTATGAGGCAAGGGGGGATGGGCTTAATATCGGTTCAGTTGTCTCCTTTCAATTTCTTACATCAAGTTAGAAATGGGTCAAACAGGTA-CCTGTCAGAAAATGAGGGAATTGGGCA
gi|3 : GTAATGTTGTTCTGGTAAGAGATGTT-TTATAGAAGTGGTAGCAAAAGCTTATAACAAAAGTTACTTTTGAATGTGTCTAGGAATAC-----TTACAATTAGACATAAAGGAAA---C-TTTGTTGATAGT--AAAAAATGGGAATTTTTAGT--ACAA-AATGG-TGGGA-AATAAAGGTATCAAAACCTTTA--GA-CATTGGACTTTT-T-----TA-A----A--GTAAAAC-AA--------GAA-A------TGG-A-ACTTTTTAAATG-aaactcttgtgtatgcatccaagtacttgtaaacctttaaattgtgtgattctatgttttatttgggcaaagaacaaatatgtgattattgcatggcaagttgtaatgttgttctggtaagagatgttttatagaagtggtagcaaaagcttataacaaaagttacttttgaatgtgtctaggaatacttacaattagacataaaggaaactttgttgatagtaaaaaatgggaatttttagtacaaaatggtgggaaataaaggtatcaaaacctttagacattggacttttttaaagtaaaacaagaaatggaactttttaaatgttttaa
gi|4 : cgttattgataagttttgagttgtctctcgcgcttacgttgaatctttcaaaagtcacaggcaattttggttggggcaaaaattcaggctcagatctgaaaactttgttgtgaacgacgtgaataatggttgggaatgttaaagaatttaaggcttctttgaatataacatttacaaaaatctgcgatgagcatggtttcacgtaattactattccgaaaatgtgaattccatttaatcatttagtttgcatcctggaaatagggtggatataaaaccgcgagacttaacaccataggtttaaaattggacaatttatcaacactagcccttcccaagctccttccacttattttccgcatgtgggcgtgatccaccaaaaaacaattggatagatgatatcaacagaacatttttcaatattatttatgggtgatacaaagtagaaaggttgaaaataaatacaattgttttcaggtaaattatgaggcaaggggggatgggcttaatatcggttcagttgtctcctttcaatttcttacatcaagttagaaatgggtcaaacaggtacctgtcagaaaatgagggaattgggcaaaactcttgtgtatgcatccaagtacttgtaaacctttaaattgtgtgattctatgttttatttgggcaaagaacaaatatgtgattattgcatggcaagttTGTAAA-GATAA-GTT--CA-AAGTTT-TT------GGAATA-AAT-TTTACCAAAA-ACCT-TG-----AGGA-T-ATCA--TAA-----------AATTAT-CAA--TC----C-AAA-AT-----TTCAGCAATTAAAAG---GTTA-T--TAGG-ATCCT-------GG---GG---TGAAA----GAGA--TTTAAAA--TCA--ATTAGGAA--AAATT--ACAA-TTATTAAAACT-TA--G--CA--TGCCTAAGCT-G-ATACC-----TTTATTTTCAGC-TTTG--------CCTGACCTTCCAAAGAATATGTT----G-----G--ATGAAATA--AATAAAATAT--TTTTTCAAAT-TCA--TTTGAG-GTTATAAAACAGAAAAGGTAAAAAG---------AAATACACTCATT----GGT-AG--TTATGAGG--AGGGTGGAT----TAAACAT-GATTCACTTGTCTTCTTTT-GTTTCATATATCACACTA-ACATGGGTTAAAC-GATACCTTAGCA-AAAATAAAGGGATCTGGAAGCATTttttaa
gi|4 : gTTTTATTTATCAAAAGAAAATCTTCAATAGTTTGTATTTTT-ATTGGAAATGAT-TTTTGG--AGAGATGTTATAA---AAGCATTGATACAAGTT---AAAAAA-GAC----CTGATCATGTATCACACTAT-----CTACACTCAGGTATTA--GAAA---TGTTT-CTG-T-GTG-AAAAAGTGGGCACGTT--ATAATCAA-AATGGATCGAC-AA-------------------------CAGAGGAC--CTGG-----TGTA----T--G-GAAAT-AATTGCGTGCAAT-AAAGATCTAGAA-GTTTT---AATGAA---TAAGGGCAGGGATGTGCTTGGTTTT---CTA--AACTTTTTT--AGACTATTTTCATATGTGAT-ATC-AAAATG-TCTCAAAAGTCAAtggtacaatgcatgttcaaccttaaaaatatagattttattttttatttatcaaaagaaaatcttcaatagtttgtatttttattggaaatgatttttggagagatgttataaaagcattgatacaagttaaaaaagacctgatcatgtatcacactatctacactcaggtattagaaatgtttctgtgtgaaaaagtgggcacgttataatcaaaatggatcgacaacagaggacctggtgtatggaaataattgcgtgcaataaagatctagaagttttaatgaataagggcagggatgtgcttggttttctaaacttttttagactattttcatatgtgatatcaaaatgtctcaaaagtcaaagagatattattacattgacaaga
gi|5 : gtgtaaagataagttcaaagtttttggaataaattttaccaaaaaccttgaggatatcataaaattatcaatccaaaatttcagcaattaaaaggttattaggatcctggggtgaaagagatttaaaatcaattaggaaaaattacaattattaaaacttagcatgcctaagctgatacctttattttcagctttgcctgaccttccaaagaatatgttggatgaaataaataaaatattttttcaaattcatttgaggttataaaacagaaaaggtaaaaagaaatacactcattggtagttatgaggagggtggattaaacatgattcacttgtcttcttttgtttcatatatcacactaacatgggttaaacgataccttagcaaaaataaagggatctggaagcatttggtacaatgcatgttcaaccttaaaaatatagattttattTAGTGGCCAGTATCCCAACGCGTATTTAAAAA---GGTTCTCACACTTGGACATAATAATGTGACAACACAAAAGGGCTGTTCTATAAAGGACGTTTTCATACGTGGCAGAGAATTACTCCAGTTTTTCCCTAATATGGACCTTAAATACACTACTTCTAAAGTCAAAGACAAAACCAGTATTGGATTAAACTATCTCCTCTATTCTAGGACTTTGATGACAAAGGCTTTTGACTCTTTGGAATGGATTTTTATTAGGCAAGCCGTTCCTTAACTCATTTCAAATGTTGGTGAGCTCACTTATTAAATGGTTTCCATTTACATTTT-ATCTCTC----TCCCAATACTAG-TGTGTAAGTA---AAT----ACATGGTCAT-TTATCAAGGTTGCTTTAGTCATTGAGAGGGCGTATGTAGGAACAGGAGTGATCCTCTGGGCA-CGGCGTTATCCTCTCTTTCATCGATTACAGTACTAGAGCTAACTGGCAATTTCATTGAAAAGAAAAATGAT--TAAC-TACTC-AAGAAGGCATATCT-TTGG-GGGAAGAGAATAAAG-TATAGGGACAATCACTGCGACGATGATTCCATTTCTTACCTCCTTAGATGGA-ACTCGAACAC-CTCTTAACGAGAGATCCAATGTGCTGATT-ATCTTGACAAGATT-T--AGTAGCTGCTCTCATCGGCCTGAA---CT-AATATCCTATCAAAA-TCACAAGCTAG-TCTAT-------GGAAAACTGGTTAG-GT-G-TTAAACACT--GGCCTCAAG--C-AGAAA---CAT-CT-TGTTGagagatattattacattgacaaga
gi|8 : TGCTATTA---AAGCAATAGCAAACGTT---AAGAAAAGTT----CTGAACATGTATTAGACTAC-----TTGAACTTAGATATTA--GAAA---TGTTTGCTG-T-GTA-AAAAAATGGGAAATTT--CT--TCTA-AATGGGTTGGT-AAT---GGTGTTAAA------ATCTA-AAGAGGTC--CC--------G-ATCTCT--G-AAAACAGA--------AAT-A------------------------------AAAGA-A-----GTGCTTGG--CA---ATAATA---TTTTTAAAGATTATTTTC--ATGTAGT-ATCAAATATACCCTAAAAAGTCAAgactgat
10 sequences could not be aligned to this reference sequence:
Unaligned ( gi|6 ): TAGGAATTGAGAGCCCCAACACTAAAAACAAAATAAGTGGGGAAACTTTATTAGATGAATCCATATCTGATAAAGACTGGAGATTTTATTTTGTAAATGCATCATAATGTACAAAAGGATACAAAATGAATTTATTTTCAATACCGAATCTGATGAATTATATTACTACCAACTCTTTTCTTCATAAAATTAAAATTTCAGATAATATTTGCGTATTTTTTTGTACTGTGAAGCAGAAACAATAACTCGCATATTTTATGATTGTGTACACATCAACTTATTTTGAATGATTTTTGTGCAGTGGTTTAATGTATAAGATATCAAAAAGAAAATTGTTTTACTCGGTAATAATGAAGAAAAGCTGTTAGAAAATTGTCTTTTATTGGTTGCAGAAAGTGTATTATTTTTTTAAAATCACAATTTAAGGCCTTAGCCCAAAAATTTTCCGAGGCAGTGACTTTATTTAAGTATTTAGAAATAGGAATTACTGTGAAAATGTATTCAAATGTAAATCCAAAATACTTGCAAAGGGCAATATATGATATTGTACAAAACAAGTAAGAATGGAAAACCAGGTATATATAAG
Unaligned ( gi|7 ): AAAAAGTGGGAAACTTATATAGATAACCTTATCTGACAAAGACTGGAAATTTTATTTTTAAATGTTTTCGTTATGTACGAAGGATACAAAAATAATTTATTATTCAAATACGCGAAATATCTGATGAACTATAATTGCTACCAACTCCTTATCATTTAAAATCAAACTTTCTGATAGAAGATTTTTGTGTTACTTTGTTACACATCCTGAGCAGAAACAATTAACTTGTACCATACTTCTCACATGATTTGATGTGGGATAGGTCCAATCAAGAGTGTTATTTGGAGATATGACTTTATAGGTGAGCTGGAATTTAATGATAATTCTGAAAAACATGATTAGATTAAATACATCAAAAAGCAATTAATAACTTGTGTTGGTGTATATACTTTTGTTGTAATCA
Unaligned ( gi|9 ): TTACATTGCTATAACTCGTTCCTTCACAAACTTAAACTTGTAGAAAATGACAAATGTTCTCTTTGTAAATGTGAAAGAGAAACAATTTCTCATATATTTATGATTGTAATATCACCCTAGCCTTTTGGGGAGATTTTGTGAAATGGAACAGTGCTGTTGAAAAGGATTATAAGATTTCGAAAAGAATTGTATTACTTGGANNNNNNNNNNNNNNNNNNNNNNNNNAATATATCTTTATTA
Unaligned ( gi|10 ): AAGAGAGATATATTATTGCATTGAAAGAAGGTAAATAGATGCAAACGATGAACATACTAAAAATAATAATTATTGTCAACATGTAATATGAAATATTTATATCAAATTTTTAAAAGAAAGGAGATTTATAGCCCAACATAAA
Unaligned ( gi|11 ): AGAGAGATATATTATTGCATTGAAAGAAGGTAAAATAGATGCAAACGATGAACATACTAAAAAATAATAATTATTGTCAACATGTAATATGAATATTTATATCAAATTTTTAAAAGAAAGGAGATATACCCCAACATAAAA
Unaligned ( gi|12 ): TATTATTGCATTGAAAGAAGGTAAAATAGATGCAAACGATGAACATACTAAAAATAATAATTATTGTCAACATGTAATATGAAATATTTATATCAAATTTTAAAAGAAAGGAGATTATAGCCCCAACATAAA
Unaligned ( gi|13 ): AGCTAGGATCAGAATAATATGAACATTCTGAAATATATCTGTTGTCCCATAAAAATGTTAGTGAAATTGTAGATACGAAATATTTATATAAACT
Unaligned ( gi|14 ): GAGATATTATTGGATTGAAAGAAGGTAGGATAGATAAAAATAATGAAGTACGGAATGTGTCGTCAACATGTAATTCGAAATATTTATATCAA
Unaligned ( gi|15 ): AAGGATACAAAAATAATTTATTTTCAATAACGAATACTGATTAATTATATTGCTACCAACTCCTTTCTTC
Unaligned ( gi|16 ): TGAAAATGTATTTGAATGTAAATCTAAAATACTAAGCAAATGGGCAAATAT
Alignments
lowQualScore : 11111111111111111111111111111111111111111111
lowQualScore : 1 1 1 1 222 222222 1 1 222 11 222 1 1 11 222 1 1 11 1 11 11 1 1 1 11 222 222 2222 1 1 11 1 11 1 11 44444444 33333333333333 1 1 22 1 1 444444444 1 2 555555555555555 1 444 1 1 1 22 22222 1 11 11 1 1 2222 333333333 22222 11111 2 1 1 2222 11 22 1 1111 1 1 11 111111 111 1 1 1 66666666666666666666666666666666 1 11 1 11 1 444444444444444444444444444 22 333 11 1 11 1 1 222222 1 1 1 1 22222 111 555555555555555555 1 11 222222 1 22222 1111 1111 1 55555555555555555 2222 11 11 111 3333333333333 11 3333333333 11 333333333333333 1 00000000000000000000000000000000000000000000 22 1111 111 11 1 4444444444444444444444444444 1111 11 11 2222 1 11 1 1 1 1 7777777777777777777777777777777777777777777777777777777777777777777777777 22 11 1111 1111 22222 222222 11 11111 11 111111 1111 11111111 999999999999999999999999999999999999999999999999 2222 2222222 2222222 1 11 11 1 1
lowQualScore : 5 5 5 5 1 111 1 555555 5 5 000 1 88 000 5 5 88 111 5 5 66 5 88 88 5 5 5 88 111 111 3333 5 1 5 77 5 1 88 1 6 7 3 6 88 55555555 7 55555555555555 7 3 3 00 3 2 111111111 3 7 3 222222222222222 3 6 444 3 7 3 6 7 55 22222 3 88 7 77 3 2 5555 555555555 44444 66666 3 3 2 7 8888 33 33 3 0 4444 0 0 33 2 555555 777 0 0 0 66666666666666666666666666666666 0 77 0 33 0 444444444444444444444444444 0 00 6 000 6 1 22 0 33 0 0 888888 9 0 2 0 0 55555 0 000 999999999999999999 0 33 555555 0 55555 3 3 8888 4444 0 00000000000000000 1111 33 0 33 777 1 1111111111111 33 0 1 5555555555 33 000000000000000 0 1 66666666666666666666666666666666666666666666 2 77 4444 111 33 0 7777777777777777777777777777 2 7777 8 11 33 1111 0 44 3 3 3 3 3333333333333333333333333333333333333333333333333333333333333333333333333 1 7 55 33 0 4444 1 22 4444 33333 3 333333 1 0 1 11 55555 8 8 11 111111 8 3 1 8 4444 77777777 2 333333333333333333333333333333333333333333333333 3 0 0000 6666666 3333333 3 3 0 33 3 33 0 3 5 0
lowQualScore : . . . . . ... . ...... . . ... . .. ... . . .. ... . . .. . .. .. . . . .. ... ... .... . . . .. . . .. . . . . . .. ........ . .............. . . . .. . . ......... . . . ............... . . ... . . . . . .. ..... . .. . .. . . .... ......... ..... ..... . . . . .... .. .. . . .... . . .. . ...... ... . . . ................................ . .. . .. . ........................... . .. . ... . . .. . .. . . ...... . . . . . ..... . ... .................. . .. ...... . ..... . . .... .... . ................. .... .. . .. ... . ............. .. . . .......... .. ............... . . ............................................ . .. .... ... .. . ............................ . .... . .. .. .... . .. . . . . ......................................................................... . . .. .. . .... . .. .... ..... . ...... . . . .. ..... . . .. ...... . . . . .... ........ . ................................................ . . .... ....... ....... . . . .. . .. . . . .
lowQualScore : 0 0 0 0 0 000 0 000000 5 5 555 0 55 555 0 5 00 000 5 0 55 0 00 00 0 0 5 55 000 000 5555 5 0 0 55 0 0 00 0 7 3 3 7 33 33333333 3 77777777777777 3 3 3 00 3 0 333333333 3 3 3 000000000000000 3 7 000 3 3 3 7 3 33 00000 3 33 3 00 3 0 0000 000000000 00000 77777 7 3 0 3 3333 88 88 2 0 8888 0 0 88 5 222222 555 0 0 0 00000000000000000000000000000000 0 00 0 88 0 222222222222222222222222222 7 00 7 333 5 0 55 0 88 0 0 888888 0 0 5 0 0 00000 2 222 888888888888888888 0 88 222222 0 00000 2 2 5555 8888 0 22222222222222222 2222 88 2 88 000 2 8888888888888 22 8 0 0000000000 88 000000000000000 0 0 88888888888888888888888888888888888888888888 0 55 5555 000 88 0 5555555555555555555555555555 0 0000 0 00 88 2222 0 00 3 3 3 3 0000000000000000000000000000000000000000000000000000000000000000000000000 0 3 55 88 8 8888 0 22 8888 44444 2 222222 4 8 4 00 88888 0 0 22 888888 0 8 4 0 8888 66666666 5 888888888888888888888888888888888888888888888888 5 2 8888 0000000 5555555 2 2 0 88 2 88 0 2 0 2
consensus : TAGTGGCCAGTATCCCAACGCGTATTNAGAAAACAGGTTCTNACACTTGGACATAATAATGTGACAACACAAAAGGGCTGTTCTANAAAGGACGTTTTCATACGTGGCGGAGAATTACTCCAGTTTTTCCCTAATATGGACCTTANATACACTACTTCTAAAGTCAAAGACAAAACCGGTATTGGATTAAACTATCTCCTCTATTCTAGGACTTTGATGACAAAGGCTTTTGACTCTTTGGAATGGGNTTTTATTAGGCAAGCCGCTCCTTAANTCATTCCAAATNTTGGTGAGCTCACTTATTAAATGG-TTCCA--TACATTTT-ATCT--TCTTCCAATACTAGTTGTGTAA-TAAA-AATAA--CATGGTCAT-TT-ATCAAGGTT-CTTTAGTC-TTGAGAGGGCGT-TGTA--A-ACAGG-GTGATCCTCTGG-CAC-G-GTTATC--TT--TTCATC-ATTACAGTA---GAGCT-ACTGGCAATTTCATTG-AAAGAAAAATGT-CTAA-T-A-TC-AAG--GGCATA-NTATTGG-GGGAAGAGAATAGAGT-TA-GGACAAT-ACTGCG--GAT-ATT-CATTTC-TACCTCCT-AGATGGA-ACTCGAACACTCTCT----AAGAGAATCAATGTGC--GTTA--TTGACAAG-TT-T--AGTAG-TG-TCTCA--GGCCTGAAAC-TT-AATATT---TCAAAA-TCACAAGC-AG-TTT-T-------GGA--------TNG-GTAG--TNAAA-ACT-AGGCTC-AG--C-AGAAA---C-T-CTGTGTC-G---TGATC--CGCGAAT-CAACGGC--GGGATGTNAA-GATAA-GTT--CA-AACTTC-TT------GGAATACAAC-TTTACCAAAA-ATCT-CG-----AGGAT-ATCATA-----A------CGTA--ATTAT-CAA--TC----C-AAA-AT-----TTCAGCAATTAAAAG---NTTA-T--TAGG-ATCCT-------GGG-TGG---TAGAA----GAGA--TCTAACA--CCA--ATTAGG----AAA--TT--ACAA-TTATTAANACTT-AG--CA-TGCC--TAAGCTGA-ATACN-----CTTATTTTCAGC-TNTG--------CC------------GAANATANT----C-----G--ACGAAAT-AATAAAATAT--TATTTCAA-T-TCA--TATGGG-GTTATAA---------GGTAAAAAG---------AAATACACTCGTT----GGT-AG--TTATGAGG--AGGGTGGAT----TAAACAT-GATTCACTTGTCTTCTTTC-GTTTCATATATCAAACTA-AAATGGGTTAAAC-GATA-CTTGGCA-AAAATAAAGGAATTTGGCAGCATTGCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTATTTATCAAAAGAAAANCTTCAAGAGTTTGTATTTTTTATTGGTAATGAT-TTTTGG--AGAGATGTTATTA---AAGCGTTGATACAGGTT---AAAAAAAGTC----CTGAACATGTATCAGACTAC-----CTGCGCTTAGATATTA--GAAA---TNTTTGCTG-T-GTG-AAAAAATGGGCACTTT--AT--TCAA-AATGGATTGGC-AAT---GGTGTTAAAAGATC---AGAGGACCT-G-----TG-A----T--GAAAATGGA--------AAT-A------TAGATGCTTTAATGAA--T-AAGGG-A-----GTGCTTGG--TA---CTAATAAC-TTTTT--AGACTATTTTC--ATGTGAT-ATCAAAAATACCCTCAAAAGTCAA
Reference ( family-828 ) : TAGTGGCCAGTATCCCAACGCGTATTNAGAAAACAGGTTCTNACACTTGGACATAATAATGTGACAACACAAAAGGGCTGTTCTANAAAGGACGTTTTCATACGTGGCGGAGAATTACTCCAGTTTTTCCCTAATATGGACCTTANATACACTACTTCTAAAGTCAAAGACAAAACCGGTATTGGATTAAACTATCTCCTCTATTCTAGGACTTTGATGACAAAGGCTTTTGACTCTTTGGAATGGGNTTTTATTAGGCAAGCCGCTCCTTAANTCATTCCAAATNTTGGTGAGCTCACTTATTAAATGG-TTCCA--TACATTTT-ATCT--TCTTCCAATACTAGTTGTGTAA-TAAA-AATAA--CATGGTCAT-TT-ATCAAGGTT-CTTTAGTC-TTGAGAGGGCGT-TGTA-GA-ACAGG-GTGATCCTCTGGGCACCG-GTTATC--CTCTTTCATC-ATTACAGTA-TAGAGCT-ACCGGCAATTTCATTG-AAAGAAAAATGT-CTAA-T-A-TC-AAG--GGCATA-CTATTGG-GGGAAGAGAATAGAGT-TA-GGACAAT-ACTGCGACGAT-ATT-CATTTC-TACCTCCTTAGATGGA-ACTCGAACACTCTCT----AAGAGAATCAATGTGC--GTTA--TTGACAAG-TT-T--AGTAG-TG-TCTCA--GGCCTGAAAC-TT-AATATT---TCAAAA-TCACAAGC-AG-TTT-T-------GGA--------TNG-GTAG--TTAAA-ACT-AGGCTC-AG--C-AGAAA---C-T-CTGTGTC-G---TGATC--CGCGAAT-CAATGGC--GGGATGTNAA-GATAA-GTT--CA-AACTTC-TT------GGAATACAAC-TTTACCAAAA-ATCT-CG-----AGGAT-ATCATA-----A------CGTA--ATTAT-CAA--TC----C-AAA-AT-----TTCAGCAATTAAAAG---NTTA-T--TAGG-ATCCT-------GGG-TGG---TAGAA----GAGA--TCTAACA--CCA--ATTAGG----AAA--TT--ACAA-TTATTAANACTT-AG--C--TGCC--TAAGCTGN-ATACN-----CTTATTTTCAGC-TNTG--------CC------------GAANATANT----C-----G--ACGAAA--AATAAAATAT--TATTTCAA-T-TCA--TATGGG-GTTATAA---------GGTAAAAAG---------AAATACACTCGTT----GGT-AG--TTATGAGG--AGGGTGGAT----TAAACAT-GATTCACTTGTCTTCTTTC-GTTTCATATATCAAACTA-AAATGGGTTAAAC-GATA-CTTGGCA-AAAATAAAGGAATTTGGCAGCATTGCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTATTTATCAAAAGAAAANCTTCAAGAGTTTGTATTTTTTATTGGTAATGAT-TTTTGG--AGAGATGTTATTA---AAGCGTTGATACAGGTT---AAAAAAAGTC----CTGAACATGTATCAGACTAC-----CTGCGCTTAGATATTA--GAAA---TNTTTGCTG-T-GTG-AAAAAATGGGCACTTT--AT--TCAA-AATGGATTGGC-AAT---GGTGTTAAAAGATC---AGAGGACCT-G-----TG-A----T--GAAAAC-GA--------AAT-A------TAGATGCTTTAATGAA--T-AAGGG-A-----GTGCTTGG--TA---CTAATAAC-TTTTT--AGACTATTTTC--ATGTGAT-ATCAAAAATACCCTCAAAAGTCAA
gi|1 : GAGATCACTTATTGA-TGG-TTC-A--TACATTTTCATTTGATATTCCAATACTATTTGTGTAA-TAAAGAATAAAACATGG-CATATT-ATCAAGGTT--TTTAGTC-TTGAGAGGGTGT-------A-ACAGG-GTGA--CTCTGA-CACCG---TATC--TT--TTCATC-ATTA-AGTA---GAGCT-AC-GACAATTTCATTG-AAA---AAATGTTCTAA-TTA-TCGAAG--GGCA-A-ATATGGG-GGAAAGAGAATAGAGT-T---GACAAT-ATT-CA--GAT-A----ATTTC-T--CTCCT-AGATGGACACTTGAACACTCGCT----AAGAGAATCAATGTGT--GTTAA-TTG-CAAG-TTCT--AGTAG-TG-TCTCA--GGCCTGAAAT-TG-AATATT---TCAAAA-TCACAAGC-AGATTT-TTCGTTGAGGA--------TCGTGTAGCTTCAAA-TCG-AGGTTC-AG--CTAGAAATACC-TACTGTGCCTA---TGTT----GCAAAT-CAAC-GC--GGGCTATAAAGGATAATGTTTGCACAACTCCGTTTTAATGGAAACACAAC-TTTACCAAAACATAT-CGTTAGCAGAATAATCATA-----AACTATTCAAA--GTCATCCAAGTTCTTATC-AAATAT-----TCCAGCAA-TAAAAGAGATTTA-TCCTAGGAATCCT-------GGGTTAA---TAGAA----AAGACGTCTAATACTCCAACATCTGG----AG-------ACA-------AACACT---G--T--CGCCCATAACCCGA-ATAGA-----C--ATGATCAAC-TGTG--------AT------------AAAAATAATTTTGC-----GTAACAAAA--AATAATATGTTCTATTTCAA-T-TCA--TATGGG-GTTATA------------T---AAG---------ACACGCACACAGG----AGT-AGAATTATGAG
gi|1 : tggtagagaTTTTTTTTTTCAAAAGAAAAGTTTCAAGAGTTTGTGTTTTTTTGTGATAATGA--TTTTGG--AGAGATTTAATT----AAGCGTTGATAC-GGTT---AAAAAAAGT-----CTGAA-ATGTATCAGACTA------CTGTGC-TAGATATAA--GAAAATTTTTTTGCTG-T-GTG-AAAAAAT-GGCACTTT--AT--TCAACAATGGACTGACAAAT---GGTGTTAAAAGATT---AGA-GACCT-GGTATATG-A----T------AT-GA--------AATAA------TAGATGCTTTAATGAA--TCAAGGG-A-----GTGCTTGG--TAACTCTAATAAC-TTTAT--AGAC-ATTTTC--ATGTGATAATCAAAAATA-CATCACAAATCAAcaaatacacatccctatatattaatcatgttgtggaggaggtgagactcacacacgtggaatatcacgaactttagactcatccgtgttttgtttcgattacacacagaatggaatggtgtaaaaggctgtagtagaagtatggggcaatgatagagattaacggtagtctggcagctatattatgcttaaaatggtcaatttcacccttaagatatatagatttcaattttttttttcaaaagaaaagtttcaagagtttgtgtttttttgtgataatgattttggagagatttaattaagcgttgatacggttaaaaaaagtctgaaatgtatcagactactgtgctagatataagaaaatttttttgctgtgtgaaaaaatggcactttattcaacaatggactgacaaatggtgttaaaagattagagacctggtatatgatatgaaataatagatgctttaatgaatcaagggagtgcttggtaactctaataactttatagacattttcatgtgataatcaaaaatacatcacaaatcaaaagatattattggattgaaagaaaggtagaagaataaaataatgaattaatgatgttcgtgcataatttattgtcaacatgtaattctaaatatttatcaaattttgaaaagaaaaggagtttaatagccccaatttaaaa
gi|17 : tggtagagagagatcacttattgatggttcatacattttcatttgatattccaatactatttgtgtaataaagaataaaacatggcatattatcaaggtttttagtcttgagagggtgtaacagggtgactctgacaccgtatcttttcatcattaagtagagctacgacaatttcattgaaaaaatgttctaattatcgaagggcaaatatgggggaaagagaatagagttgacaatattcagataatttctctcctagatggacacttgaacactcgctaagagaatcaatgtgtgttaattgcaagttctagtagtgtctcaggcctgaaattgaatatttcaaaatcacaagcagatttttcgttgaggatcgtgtagcttcaaatcgaggttcagctagaaatacctactgtgcctatgttgcaaatcaacgcgggctataaaggataatgtttgcacaactccgttttaatggaaacacaactttaccaaaacatatcgttagcagaataatcataaactattcaaagtcatccaagttcttatcaaatattccagcaataaaagagatttatcctaggaatcctgggttaatagaaaagacgtctaatactccaacatctggagacaaacactgtcgcccataacccgaatagacatgatcaactgtgataaaaataattttgcgtaacaaaaaataatatgttctatttcaattcatatggggttatataagacacgcacacaggagtagaattatgagcaaatacacatccctatatattaatcatgttgtggaggaggtgagactcacacacgtggaatatcacgaactttagactcatccgtgttttgtttcgattacacacagaatggaatggtgtaaaaggctgtagtagaagtatggggcaatgatagagattaacggtagtctggcagctatattatgcttaaaatggtcaatttcacccttaagatatatagatttcaaTT----GGT-AG--TTATGAGG--AGGGTGGAT----TAAACAT-CATTCAaagatattattggattgaaagaaaggtagaagaataaaataatgaattaatgatgttcgtgcataatttattgtcaacatgtaattctaaatatttatcaaattttgaaaagaaaaggagtttaatagccccaatttaaaa
gi|2 : TAGTG-TCA-TATCC-AAC-CGTATTAAGAAAACAGGTTCTGA-AT---GACATAATAA-GTGACA-CACAAAAGGG---TTTTAAAAAGGACGTT--CATA---GG-GGAAAAT-ACTC--GTTT---CCTA-TATG-ACCTTAT-TA-ACTA--TCTAAAG--AAAGA-AAAAC-GGT-TTGGATTA--CTA---CTTCTATT---AGACTTTGA----AAAAGTTTTTGACTCTT-GGAATGGGATTTTATTAG-CAAG--GCTC-TTAAATCATTC--AATTTTGGTGA-CTCACTTATTAAATGG-TTCCA--TACATTT--AT----TCTTCCAATACTAGTTGTGTAA-TAAA---TAA----TGGTCAT-TTTATCAAGGTT-CTTTAGTC-TTGAAAGGG-GT-TGTA-TAGACAGG-GTGATCCTCTGG-CAC---GT-ATC--TT--TTCATC-ATTACAGTA---GAGCT-ACTGGCAATTTCATTG-AAAGAAAA-TGT--TAA-T-A-TC-AAG--GGCATAACTATTGGTGGGAAGAGAATA-AGT-TA-GGACAAT-A-TGCA--GAT-ATT-CATTTC-TAC-TCCT-AGATGGA-ACT-GAACACTCTCT----AAGAGAATCAATGTGC--GTTA--TTGACAAG-TT-T--AGTAG-TG-TCTCA--GACCTGAAAC-TT-AATATT---CCAAAG-TCACAAGC-AG-TTT---------GGA--------TTG-GTAG--T-AAA-ACT--GGTTC-AG--C-AGAAA---C-T-CTGGGTC-C---TGATT--TGCAAATACAATGG-----GAT--CAA-GATAA-GTT--CA-AACTTC-TT------GGAATA-AAT-TTTACCAAAA-ATCT-TG-----AAGAT-ATCATA-----A------CATATAATTAT-TAA--TC----T-AAA-CT-----TTCAGCAATTAAAAG---GTTA-T--TAGG-ATCCT-------GGA-T-----TAGAA----GAGA--TCTAACA--CCA--ATTGGG----AAA--TT--ACAA-TTATTAAAACTTTAG--CACTGCC--TAAGCTAATATACCGGTATTTTATTTTCAGC-TTTG--------CT------------GAATATACT----C-----G--ATGAAA--ATTAAAATAT--TATTTAAA-T-TCA--TATGGG-GTTATAA---------GGTGAAAAG---------AAATACACTCATT----GGT-AG--TTATGAGG--AGGGTGGAT----TAAACAT-GATTCACTTGCCCTCTTTT-GTTTCATATATCAAACTA-AAATGGGTTAAAC-GATA-CTTGGCA-AAAATAAAGGAGTTTGGCAGCATTGCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTATTTATCAAAAGAAAAACTTCAAGAGTTTGTATTTTTTATTGATAATGA--TTTTGG--AGAGATGTTATTA---AAGCGTTGATACAGGTT---AAAAAAAGTC----TTGAACATGTATCAGACTACCGTAGCTGTGCTTAGATATTA--GAAA---TTTTTGCTG-T-GTGAAAAAAATGGGCACTTT--AT--TCAA-AACGGACTGTC-AAT---GGTGTTAAAAGATT---AGAGGACCT-G-----TG-A----TCGGAAAATGGA--------AAT-AT-----TAGATGCTTTAATGAAATT-AAGGG-A-----GTGCTTGG--TA---CTAATAAC-TTTTT--AGACTATTTTC--ATGTGAT-ATCAAAAATACCCTTAAAAGTCAAt
gi|3 : C--GTTA--TTGATAAG-TT-TTGAGTTG-TC-TCTCG--CGCTT---ACGTTGAATCTT---TCAAAAGTCACAGGC-AA-TTT-T-------GGT--------TGG-G--G--CAAAA-ATTCAGGCTC-AGATC-TGAAA---A---CTTTGTT-G---TGAACGACGTGAAT--AATGGTTGGGAATGTTAA--AGAA-TTT--AA-GGCTTC-TT------TGAATATAACATTTAC-AAAA-ATCTGCG-----ATG---AGCATGGTTTCA------CGTA--ATTAC-TAT--TC----CGAAA-ATGTGAATTC--CATTTAATCA---TTTAGT--TTGC-ATCCTGGAAATAGGG-TGGATATAAAACCGCGAGA--CTTAACA--CCA----TAGGTTTAAAA--TTGGACAATTTATCAACAC-T-AGCCC--TTCC--CAAGCTCC-TTCCA-----CTTATTTTCCGCATGTGGGCGTGATCCACCA--------AAAAACAAT----TGGATAG--ATGATATCAACAGAACAT--T-TTTCAA-TATTATTTATGGGTGATACAA---------AGTAGAAAGGTTGAAAATAAATACAATTGTTTTCAGGTAAA--TTATGAGGCAAGGGGGGATGGGCTTAATATCGGTTCAGTTGTCTCCTTTCAATTTCTTACATCAAGTTAGAAATGGGTCAAACAGGTA-CCTGTCAGAAAATGAGGGAATTGGGCA
gi|3 : GTAATGTTGTTCTGGTAAGAGATGTT-TTATAGAAGTGGTAGCAAAAGCTTATAACAAAAGTTACTTTTGAATGTGTCTAGGAATAC-----TTACAATTAGACATAAAGGAAA----CTTTGTTGATAGT--AAAAAATGGGAATTTTTAGT--ACAA-AATGG-TGGGA-AATAAAGGTATCAAAAaaactcttgtgtatgcatccaagtacttgtaaacctttaaattgtgtgattctatgttttatttgggcaaagaacaaatatgtgattattgcatggcaagttgtaatgttgttctggtaagagatgttttatagaagtggtagcaaaagcttataacaaaagttacttttgaatgtgtctaggaatacttacaattagacataaaggaaactttgttgatagtaaaaaatgggaatttttagtacaaaatggtgggaaataaaggtatcaaaacctttagacattggacttttttaaagtaaaacaagaaatggaactttttaaatgttttaa
gi|4 : cgttattgataagttttgagttgtctctcgcgcttacgttgaatctttcaaaagtcacaggcaattttggttggggcaaaaattcaggctcagatctgaaaactttgttgtgaacgacgtgaataatggttgggaatgttaaagaatttaaggcttctttgaatataacatttacaaaaatctgcgatgagcatggtttcacgtaattactattccgaaaatgtgaattccatttaatcatttagtttgcatcctggaaatagggtggatataaaaccgcgagacttaacaccataggtttaaaattggacaatttatcaacactagcccttcccaagctccttccacttattttccgcatgtgggcgtgatccaccaaaaaacaattggatagatgatatcaacagaacatttttcaatattatttatgggtgatacaaagtagaaaggttgaaaataaatacaattgttttcaggtaaattatgaggcaaggggggatgggcttaatatcggttcagttgtctcctttcaatttcttacatcaagttagaaatgggtcaaacaggtacctgtcagaaaatgagggaattgggcaaaactcttgtgtatgcatccaagtacttgtaaacctttaaattgtgtgattctatgttttatttgggcaaagaacaaatatgtgattattgcatggcaagttTGTAAA-GATAA-GTT--CA-AAGTTT-TT------GGAATA-AAT-TTTACCAAAA-ACCT-TG-----AGGAT-ATCATA-----A---------A--ATTAT-CAA--TC----C-AAA-AT-----TTCAGCAATTAAAAG---GTTA-T--TAGG-ATCCT-------GGG---G---TGAAA----GAGA--TTTAAAA--TCA--ATTAGG----AAAAATT--ACAA-TTATTAAAACTT-AG--CA-TGCC--TAAGCTG--ATACC-----TTTATTTTCAGC-TTTG--------CCTGACCTTCCAAAGAATATGTT----G-----G--ATGAAATAAATAAAATAT--TTTTTCAAAT-TCA--TTTGAG-GTTATAAAACAGAAAAGGTAAAAAG---------AAATACACTCATT----GGT-AG--TTATGAGG--AGGGTGGAT----TAAACAT-GATTCACTTGTCTTCTTTT-GTTTCATATATCACACTA-ACATGGGTTAAAC-GATACCTTAGCA-AAAATAAAGGGATCTGGAAGCATTcctttagacattggacttttttaaagtaaaacaagaaatggaactttttaaatgttttaa
gi|4 : gTTTTATTTATCAAAAGAAAATCTTCAATAGTTTGTATTTTT-ATTGGAAATGAT-TTTTGG--AGAGATGTTATAA---AAGCATTGATACAAGTT----AAAAAAGAC----CTGATCATGTATCACACTAT-----CTACACTCAGGTATTA--GAAA---TGTTT-CTG-T-GTG-AAAAAGTGGGCACGTT--ATAATCAA-AATGGATCGAC-AA-----------------C---AGAGGACCTGG-----TGTA----T--GGAAAT-AATTGCGTGCAAT-AAAGATCTAGAAGTTTTAATGAA--T-AAGGGCAGGGATGTGCTTGGTTTT---CTA--AACTTTTTT--AGACTATTTTCATATGTGAT-ATC-AAAATG-TCTCAAAAGTCAAtggtacaatgcatgttcaaccttaaaaatatagattttattttttatttatcaaaagaaaatcttcaatagtttgtatttttattggaaatgatttttggagagatgttataaaagcattgatacaagttaaaaaagacctgatcatgtatcacactatctacactcaggtattagaaatgtttctgtgtgaaaaagtgggcacgttataatcaaaatggatcgacaacagaggacctggtgtatggaaataattgcgtgcaataaagatctagaagttttaatgaataagggcagggatgtgcttggttttctaaacttttttagactattttcatatgtgatatcaaaatgtctcaaaagtcaaagagatattattacattgacaaga
gi|5 : gtgtaaagataagttcaaagtttttggaataaattttaccaaaaaccttgaggatatcataaaattatcaatccaaaatttcagcaattaaaaggttattaggatcctggggtgaaagagatttaaaatcaattaggaaaaattacaattattaaaacttagcatgcctaagctgatacctttattttcagctttgcctgaccttccaaagaatatgttggatgaaataaataaaatattttttcaaattcatttgaggttataaaacagaaaaggtaaaaagaaatacactcattggtagttatgaggagggtggattaaacatgattcacttgtcttcttttgtttcatatatcacactaacatgggttaaacgataccttagcaaaaataaagggatctggaagcatttggtacaatgcatgttcaaccttaaaaatatagattttattTAGTGGCCAGTATCCCAACGCGTATTTAAAAA---GGTTCTCACACTTGGACATAATAATGTGACAACACAAAAGGGCTGTTCTATAAAGGACGTTTTCATACGTGGCAGAGAATTACTCCAGTTTTTCCCTAATATGGACCTTAAATACACTACTTCTAAAGTCAAAGACAAAACCAGTATTGGATTAAACTATCTCCTCTATTCTAGGACTTTGATGACAAAGGCTTTTGACTCTTTGGAATGGATTTTTATTAGGCAAGCCGTTCCTTAACTCATTTCAAATGTTGGTGAGCTCACTTATTAAATGGTTTCCATTTACATTTT-ATCTC-TCTCCCAATACTAG-TGTGTAAGT--A-AAT-A--CATGGTCAT-TT-ATCAAGGTTGCTTTAGTCATTGAGAGGGCGTATGTAGGA-ACAGGAGTGATCCTCTGGGCACGGCGTTATCCTCTCTTTCATCGATTACAGTACTAGAGCTAACTGGCAATTTCATTGAAAAGAAAAATGA-TTAACT-ACTC-AAGAAGGCATA-TCTTTGG-GGGAAGAGAATAAAGTATAGGGACAATCACTGCGACGATGATTCCATTTCTTACCTCCTTAGATGGA-ACTCGAACAC-CTCTTAACGAGAGATCCAATGTGCTGATTATCTTGACAAGATT-T--AGTAGCTGCTCTCATCGGCCTGAA---CT-AATATCCTATCAAAA-TCACAAGCTAG-TCTAT-------GGAAAACTGGTTAG-GT-G--TTAAACACT-GGCCTCAAG--C-AGAAA---CAT-CT-TGTT-GGACTGATagagatattattacattgacaaga
gi|8 : TGCTATTA---AAGCAATAGCAAACGTT---AAGAAAAGTT----CTGAACATGTATTAGACTAC-----TTGAACTTAGATATTA--GAAA---TGTTTGCTG-T-GTA-AAAAAATGGGAAATTT--CT--TCTA-AATGGGTTGGT-AAT---GGTGTTAAA--ATCTAAAGAGGTCC--------CG-ATCTCT--GAAAACAGA--------AAT-A--------------------------AAAGA-A-----GTGCTTGG--CA---ATAATA---TTTTTAAAGATTATTTTC--ATGTAGT-ATCAAATATACCCTAAAAAGTCAA
10 sequences could not be aligned to this reference sequence:
Unaligned ( gi|6 ): TAGGAATTGAGAGCCCCAACACTAAAAACAAAATAAGTGGGGAAACTTTATTAGATGAATCCATATCTGATAAAGACTGGAGATTTTATTTTGTAAATGCATCATAATGTACAAAAGGATACAAAATGAATTTATTTTCAATACCGAATCTGATGAATTATATTACTACCAACTCTTTTCTTCATAAAATTAAAATTTCAGATAATATTTGCGTATTTTTTTGTACTGTGAAGCAGAAACAATAACTCGCATATTTTATGATTGTGTACACATCAACTTATTTTGAATGATTTTTGTGCAGTGGTTTAATGTATAAGATATCAAAAAGAAAATTGTTTTACTCGGTAATAATGAAGAAAAGCTGTTAGAAAATTGTCTTTTATTGGTTGCAGAAAGTGTATTATTTTTTTAAAATCACAATTTAAGGCCTTAGCCCAAAAATTTTCCGAGGCAGTGACTTTATTTAAGTATTTAGAAATAGGAATTACTGTGAAAATGTATTCAAATGTAAATCCAAAATACTTGCAAAGGGCAATATATGATATTGTACAAAACAAGTAAGAATGGAAAACCAGGTATATATAAG
Unaligned ( gi|7 ): AAAAAGTGGGAAACTTATATAGATAACCTTATCTGACAAAGACTGGAAATTTTATTTTTAAATGTTTTCGTTATGTACGAAGGATACAAAAATAATTTATTATTCAAATACGCGAAATATCTGATGAACTATAATTGCTACCAACTCCTTATCATTTAAAATCAAACTTTCTGATAGAAGATTTTTGTGTTACTTTGTTACACATCCTGAGCAGAAACAATTAACTTGTACCATACTTCTCACATGATTTGATGTGGGATAGGTCCAATCAAGAGTGTTATTTGGAGATATGACTTTATAGGTGAGCTGGAATTTAATGATAATTCTGAAAAACATGATTAGATTAAATACATCAAAAAGCAATTAATAACTTGTGTTGGTGTATATACTTTTGTTGTAATCA
Unaligned ( gi|9 ): TTACATTGCTATAACTCGTTCCTTCACAAACTTAAACTTGTAGAAAATGACAAATGTTCTCTTTGTAAATGTGAAAGAGAAACAATTTCTCATATATTTATGATTGTAATATCACCCTAGCCTTTTGGGGAGATTTTGTGAAATGGAACAGTGCTGTTGAAAAGGATTATAAGATTTCGAAAAGAATTGTATTACTTGGANNNNNNNNNNNNNNNNNNNNNNNNNAATATATCTTTATTA
Unaligned ( gi|10 ): AAGAGAGATATATTATTGCATTGAAAGAAGGTAAATAGATGCAAACGATGAACATACTAAAAATAATAATTATTGTCAACATGTAATATGAAATATTTATATCAAATTTTTAAAAGAAAGGAGATTTATAGCCCAACATAAA
Unaligned ( gi|11 ): AGAGAGATATATTATTGCATTGAAAGAAGGTAAAATAGATGCAAACGATGAACATACTAAAAAATAATAATTATTGTCAACATGTAATATGAATATTTATATCAAATTTTTAAAAGAAAGGAGATATACCCCAACATAAAA
Unaligned ( gi|12 ): TATTATTGCATTGAAAGAAGGTAAAATAGATGCAAACGATGAACATACTAAAAATAATAATTATTGTCAACATGTAATATGAAATATTTATATCAAATTTTAAAAGAAAGGAGATTATAGCCCCAACATAAA
Unaligned ( gi|13 ): AGCTAGGATCAGAATAATATGAACATTCTGAAATATATCTGTTGTCCCATAAAAATGTTAGTGAAATTGTAGATACGAAATATTTATATAAACT
Unaligned ( gi|14 ): GAGATATTATTGGATTGAAAGAAGGTAGGATAGATAAAAATAATGAAGTACGGAATGTGTCGTCAACATGTAATTCGAAATATTTATATCAA
Unaligned ( gi|15 ): AAGGATACAAAAATAATTTATTTTCAATAACGAATACTGATTAATTATATTGCTACCAACTCCTTTCTTC
Unaligned ( gi|16 ): TGAAAATGTATTTGAATGTAAATCTAAAATACTAAGCAAATGGGCAAATAT
Alignments
lowQualScore : 11111111111111111111111111111111111111111111
lowQualScore : 1 1 1 1 222 222222 1 1 222 11 222 1 1 11 222 1 1 11 1 11 11 1 1 1 11 222 222 2222 1 1 11 1 11 1 11 44444444 33333333333333 1 1 22 1 1 5555555 1 1 333333333333 1 222 1 1 22 22222 1 11 11 1 1 2222 222222222 22222 11111 1 1 1 2222 11 22 1 1111 1 1 11 111111 111 1 1 1 66666666666666666666666666666666 1 11 1 11 1 444444444444444444444444444 333333333 11 1 11 1 1 222222 1 1 1 1 22222 111 555555555555555555 1 11 222222 1 22222 1111 1111 1 55555555555555555 2222 11 11 111 3333333333333 11 2222222222 1 3333333333333 1 00000000000000000000000000000000000000000000 22 1 1111 111 11 1 4444444444444444444444444444 1111 11 11 2222 1 11 1 1 1 1 7777777777777777777777777777777777777777777777777777777777777777777777777 22 11 1111 1111 22222 222222 11 11111 11 111111 1111 11111111 77777777777777777777777777777777777777777777777 2222 2222222 2222222 1 11 11 1 1
lowQualScore : 5 5 5 5 1 111 1 555555 5 5 000 1 88 000 5 5 88 111 5 5 66 5 88 88 5 5 5 88 111 111 3333 5 1 5 77 5 1 88 1 6 7 3 6 88 55555555 7 55555555555555 7 3 3 00 3 2 3333333 3 7 3 111111111111 3 6 333 3 7 3 6 7 55 22222 3 88 7 44 3 2 5555 333333333 44444 66666 3 3 2 7 8888 33 33 3 0 4444 0 0 33 2 555555 777 0 0 0 33333333333333333333333333333333 0 77 0 33 0 444444444444444444444444444 0 555555555 6 1 22 0 33 0 0 888888 9 0 2 0 0 55555 0 000 999999999999999999 0 33 555555 0 55555 3 3 8888 4444 0 00000000000000000 1111 33 0 33 777 1 1111111111111 33 0 1 0000000000 2 0 0 1111111111111 0 1 66666666666666666666666666666666666666666666 2 55 0 4444 111 33 0 7777777777777777777777777777 2 7777 8 11 33 1111 0 44 3 3 3 3 3333333333333333333333333333333333333333333333333333333333333333333333333 1 7 55 33 0 4444 1 22 4444 33333 3 333333 1 0 1 11 55555 8 8 11 111111 8 3 1 8 4444 77777777 2 55555555555555555555555555555555555555555555555 3 0 0000 6666666 3333333 3 3 0 33 3 33 0 3 5 0
lowQualScore : . . . . . ... . ...... . . ... . .. ... . . .. ... . . .. . .. .. . . . .. ... ... .... . . . .. . . .. . . . . . .. ........ . .............. . . . .. . . ....... . . . ............ . . ... . . . . . .. ..... . .. . .. . . .... ......... ..... ..... . . . . .... .. .. . . .... . . .. . ...... ... . . . ................................ . .. . .. . ........................... . ......... . . .. . .. . . ...... . . . . . ..... . ... .................. . .. ...... . ..... . . .... .... . ................. .... .. . .. ... . ............. .. . . .......... . . . ............. . . ............................................ . .. . .... ... .. . ............................ . .... . .. .. .... . .. . . . . ......................................................................... . . .. .. . .... . .. .... ..... . ...... . . . .. ..... . . .. ...... . . . . .... ........ . ............................................... . . .... ....... ....... . . . .. . .. . . . .
lowQualScore : 0 0 0 0 0 000 0 000000 5 5 555 0 55 555 0 5 00 000 5 0 55 0 00 00 0 0 5 55 000 000 5555 5 0 0 55 0 0 00 0 7 3 3 7 33 33333333 3 77777777777777 3 3 3 00 3 0 7777777 3 3 3 777777777777 3 7 333 3 3 3 7 3 33 00000 3 33 3 33 3 0 0000 000000000 00000 77777 3 3 0 3 3333 88 88 2 0 8888 0 0 88 5 222222 555 0 0 0 22222222222222222222222222222222 0 00 0 88 0 222222222222222222222222222 7 000000000 5 0 55 0 88 0 0 888888 0 0 5 0 0 00000 2 222 888888888888888888 0 88 222222 0 00000 2 2 5555 8888 0 22222222222222222 2222 88 2 88 000 2 8888888888888 22 8 0 5555555555 5 0 2 2222222222222 0 0 88888888888888888888888888888888888888888888 0 55 0 5555 000 88 0 5555555555555555555555555555 0 0000 0 00 88 2222 0 00 3 3 3 3 0000000000000000000000000000000000000000000000000000000000000000000000000 0 3 55 88 8 8888 0 22 8888 44444 2 222222 4 8 4 00 88888 0 0 22 888888 0 8 4 0 8888 66666666 5 22222222222222222222222222222222222222222222222 5 2 8888 0000000 5555555 2 2 0 88 2 88 0 2 0 2
consensus : TAGTGGCCAGTATCCCAACGCGTATTNAGAAAACAGGTTCTNACACTTGGACATAATAATGTGACAACACAAAAGGGCTGTTCTANAAAGGACGTTTTCATACGTGGCGGAGAATTACTCCAGTTTTTCCCTAATATGGACCTTANATACACTACTTCTAAAGTCAAAGACAAAACCGGTATTGGATTAAACTATCTCCTCTATTCTAGGACTTTGATGACAAAGGCTTTTGACTCTTTGGAATGGGNTTTTATTAGGCAAGCCGCTCCTTAANTCATTCCAAATNTTGGTGAGCTCACTTATTAAATGG-TTCCA--TACATTTT-ATCT--TCTTCCAATACTAGTTGTGTAA-TAAA-AATAA--CATGGTCAT-TT-ATCAAGGTT-CTTTAGTC-TTGAGAGGGCGT-TGTA-GAACAGG-GTGATCCTCT-GGCACG--GTTATC----TTTTCATC-ATTACAG---TAGAGCT-ACTGGCAATTTCATTG-AAAGAAAAATGT-CTAA-T-A-TC-AAG--GGCATAA-TATTGG-GGGAAGAGAATAGAGT-TA-GGACAAT-ACTGCG--GAT-ATT-CATTTC-TACCTCC-TAGATGGA-ACTCGAACACTCTCT----AAGAGAATCAATGTGC--GTTA--TTGACAAG-TT-T--AGTAG-TG-TCTCA--GGCCTGAAAC-TT-AATATT---TCAAAA-TCACAAGC-AG-TTT-T-------GGA--------TNG-GTAG--TNAAA-ACT-AGGCTC-AG--C-AGAAA---C-T-CTGTGTC-G---TGATC--CGCGAAT-AACGGC--GGGATGTNAA-GATAA-GTT--CA-AACTTC-TT------GGAATACAAC-TTTACCAAAA-ATCT-CG-----AGGAT-ATCATA-----A------CGTA--ATTAT-CAA--TC----C-AAA-AT-----TTCAGCAATTAAAAG---NTTA-T--TAGG-ATCCT-------GGG-TGG---TAGAA----GAGA--TCTAACA--CCA--ATTAGG----AAA--TT--ACAA-TTATTAANACT-T-AG-CA-TGCC-TAAGCTGA-ATACN-----CTTATTTTCAGC-TNTG--------CC------------GAANATANT----C-----G--ACGAAAT-AA-TAAAATAT--TATTTCAA-T-TCA--TATGGG-GTTATAA---------GGTAAAAAG---------AAATACACTCGTT----GGT-AG--TTATGAGG--AGGGTGGAT----TAAACAT-GATTCACTTGTCTTCTTTC-GTTTCATATATCAAACTA-AAATGGGTTAAAC-GATA-CTTGGCA-AAAATAAAGGAATTTGGCAGCATTGCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTATTTATCAAAAGAAAANCTTCAAGAGTTTGTATTTTTTATTGGTAATGAT-TTTTGG--AGAGATGTTATTA---AAGCGTTGATACAGGTT---AAAAAAAGTC----CTGAACATGTATCAGACTAC-----CTGCGCTTAGATATTA--GAAA---TNTTTGCTG-T-GTG-AAAAAATGGGCACTTT--AT--TCAA-AATGGATTGGC-AAT---GGTGTTAAAAGATC---AGAGGACCT-G-----TG-A----T--GAAAATA-------GAAAT-A------TAGATGCTTTAATGAA--T-AAGGG-A-----GTGCTTGG--TA---CTAATAAC-TTTTT--AGACTATTTTC--ATGTGAT-ATCAAAAATACCCTCAAAAGTCAA
Reference ( family-828 ) : TAGTGGCCAGTATCCCAACGCGTATTNAGAAAACAGGTTCTNACACTTGGACATAATAATGTGACAACACAAAAGGGCTGTTCTANAAAGGACGTTTTCATACGTGGCGGAGAATTACTCCAGTTTTTCCCTAATATGGACCTTANATACACTACTTCTAAAGTCAAAGACAAAACCGGTATTGGATTAAACTATCTCCTCTATTCTAGGACTTTGATGACAAAGGCTTTTGACTCTTTGGAATGGGNTTTTATTAGGCAAGCCGCTCCTTAANTCATTCCAAATNTTGGTGAGCTCACTTATTAAATGG-TTCCA--TACATTTT-ATCT--TCTTCCAATACTAGTTGTGTAA-TAAA-AATAA--CATGGTCAT-TT-ATCAAGGTT-CTTTAGTC-TTGAGAGGGCGT-TGTA--AACAGG-GTGATCCTCT-GGCACG--GTTATC----TTTTCATC-ATTACAG---TAGAGCT-ACTGGCAATTTCATTG-AAAGAAAAATGT-CTAA-T-A-TC-AAG--GGCATAN-TATTGG-GGGAAGAGAATAGAGT-TA-GGACAAT-ACTGCG--GAT-ATT-CATTTC-TACCTCC-TAGATGGA-ACTCGAACACTCTCT----AAGAGAATCAATGTGC--GTTA--TTGACAAG-TT-T--AGTAG-TG-TCTCA--GGCCTGAAAC-TT-AATATT---TCAAAA-TCACAAGC-AG-TTT-T-------GGA--------TNG-GTAG--TNAAA-ACT-AGGCTC-AG--C-AGAAA---C-T-CTGTGTC-G---TGATC--CGCGAATCAACGGC--GGGATGTNAA-GATAA-GTT--CA-AACTTC-TT------GGAATACAAC-TTTACCAAAA-ATCT-CG-----AGGAT-ATCATA-----A------CGTA--ATTAT-CAA--TC----C-AAA-AT-----TTCAGCAATTAAAAG---NTTA-T--TAGG-ATCCT-------GGG-TGG---TAGAA----GAGA--TCTAACA--CCA--ATTAGG----AAA--TT--ACAA-TTATTAANACT-T-AG-CA-TGCC-TAAGCTGA-ATACN-----CTTATTTTCAGC-TNTG--------CC------------GAANATANT----C-----G--ACGAAAT-AA-TAAAATAT--TATTTCAA-T-TCA--TATGGG-GTTATAA---------GGTAAAAAG---------AAATACACTCGTT----GGT-AG--TTATGAGG--AGGGTGGAT----TAAACAT-GATTCACTTGTCTTCTTTC-GTTTCATATATCAAACTA-AAATGGGTTAAAC-GATA-CTTGGCA-AAAATAAAGGAATTTGGCAGCATTGCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTATTTATCAAAAGAAAANCTTCAAGAGTTTGTATTTTTTATTGGTAATGAT-TTTTGG--AGAGATGTTATTA---AAGCGTTGATACAGGTT---AAAAAAAGTC----CTGAACATGTATCAGACTAC-----CTGCGCTTAGATATTA--GAAA---TNTTTGCTG-T-GTG-AAAAAATGGGCACTTT--AT--TCAA-AATGGATTGGC-AAT---GGTGTTAAAAGATC---AGAGGACCT-G-----TG-A----T--GAAAATG-------GAAAT-A------TAGATGCTTTAATGAA--T-AAGGG-A-----GTGCTTGG--TA---CTAATAAC-TTTTT--AGACTATTTTC--ATGTGAT-ATCAAAAATACCCTCAAAAGTCAA
gi|1 : GAGATCACTTATTGA-TGG-TTC-A--TACATTTTCATTTGATATTCCAATACTATTTGTGTAA-TAAAGAATAAAACATGG-CATATT-ATCAAGGTT--TTTAGTC-TTGAGAGGGTGT-------AACAGG-GTGA--CTCT-GACACC--GT-ATC----TTTTCATC-ATTA-AG---TAGAGCT-AC-GACAATTTCATTG-AAA---AAATGTTCTAA-TTA-TCGAAG--GGCA-AA-TATGGG-GGAAAGAGAATAGAGT-T---GACAAT-ATT-CA--GAT-A----ATTTC-T--CTCC-TAGATGGACACTTGAACACTCGCT----AAGAGAATCAATGTGT--GTTAA-TTG-CAAG-TTCT--AGTAG-TG-TCTCA--GGCCTGAAAT-TG-AATATT---TCAAAA-TCACAAGC-AGATTT-TTCGTTGAGGA--------TCGTGTAGCTTCAAA-TCG-AGGTTC-AG--CTAGAAATACC-TACTGTGCCTA---TGTT----GCAAATCAAC-GC--GGGCTATAAAGGATAATGTTTGCACAACTCCGTTTTAATGGAAACACAAC-TTTACCAAAACATAT-CGTTAGCAGAATAATCATA-----AACTATTCAAA--GTCATCCAAGTTCTTATC-AAATAT-----TCCAGCAA-TAAAAGAGATTTA-TCCTAGGAATCCT-------GGGTTAA---TAGAA----AAGACGTCTAATACTCCAACATCTGG----AG-------ACA-------AACACTGT-CG-C----CCATAACCCGA-ATAGA-----C--ATGATCAAC-TGTG--------AT------------AAAAATAATTTTGC-----GTAACAAAA--AA-TAATATGTTCTATTTCAA-T-TCA--TATGGG-GTTATA------------T---AAG---------ACACGCACACAGG----AGT-AGAATTATGAG
gi|1 : tggtagagaTTTTTTTTTTCAAAAGAAAAGTTTCAAGAGTTTGTGTTTTTTTGTGATAATGA--TTTTGG--AGAGATTTAATT----AAGCGTTGATAC-GGTT---AAAAAAAGT-----CTGAA-ATGTATCAGACTA------CTGTGC-TAGATATAA--GAAAATTTTTTTGCTG-T-GTG-AAAAAAT-GGCACTTT--AT--TCAACAATGGACTGACAAAT---GGTGTTAAAAGATT---AGA-GACCT-GGTATATG-A----T------AT--------GAAATAA------TAGATGCTTTAATGAA--TCAAGGG-A-----GTGCTTGG--TAACTCTAATAAC-TTTAT--AGAC-ATTTTC--ATGTGATAATCAAAAATA-CATCACAAATCAAcaaatacacatccctatatattaatcatgttgtggaggaggtgagactcacacacgtggaatatcacgaactttagactcatccgtgttttgtttcgattacacacagaatggaatggtgtaaaaggctgtagtagaagtatggggcaatgatagagattaacggtagtctggcagctatattatgcttaaaatggtcaatttcacccttaagatatatagatttcaattttttttttcaaaagaaaagtttcaagagtttgtgtttttttgtgataatgattttggagagatttaattaagcgttgatacggttaaaaaaagtctgaaatgtatcagactactgtgctagatataagaaaatttttttgctgtgtgaaaaaatggcactttattcaacaatggactgacaaatggtgttaaaagattagagacctggtatatgatatgaaataatagatgctttaatgaatcaagggagtgcttggtaactctaataactttatagacattttcatgtgataatcaaaaatacatcacaaatcaaaagatattattggattgaaagaaaggtagaagaataaaataatgaattaatgatgttcgtgcataatttattgtcaacatgtaattctaaatatttatcaaattttgaaaagaaaaggagtttaatagccccaatttaaaa
gi|17 : tggtagagagagatcacttattgatggttcatacattttcatttgatattccaatactatttgtgtaataaagaataaaacatggcatattatcaaggtttttagtcttgagagggtgtaacagggtgactctgacaccgtatcttttcatcattaagtagagctacgacaatttcattgaaaaaatgttctaattatcgaagggcaaatatgggggaaagagaatagagttgacaatattcagataatttctctcctagatggacacttgaacactcgctaagagaatcaatgtgtgttaattgcaagttctagtagtgtctcaggcctgaaattgaatatttcaaaatcacaagcagatttttcgttgaggatcgtgtagcttcaaatcgaggttcagctagaaatacctactgtgcctatgttgcaaatcaacgcgggctataaaggataatgtttgcacaactccgttttaatggaaacacaactttaccaaaacatatcgttagcagaataatcataaactattcaaagtcatccaagttcttatcaaatattccagcaataaaagagatttatcctaggaatcctgggttaatagaaaagacgtctaatactccaacatctggagacaaacactgtcgcccataacccgaatagacatgatcaactgtgataaaaataattttgcgtaacaaaaaataatatgttctatttcaattcatatggggttatataagacacgcacacaggagtagaattatgagcaaatacacatccctatatattaatcatgttgtggaggaggtgagactcacacacgtggaatatcacgaactttagactcatccgtgttttgtttcgattacacacagaatggaatggtgtaaaaggctgtagtagaagtatggggcaatgatagagattaacggtagtctggcagctatattatgcttaaaatggtcaatttcacccttaagatatatagatttcaaTT----GGT-AG--TTATGAGG--AGGGTGGAT----TAAACAT-CATTCAaagatattattggattgaaagaaaggtagaagaataaaataatgaattaatgatgttcgtgcataatttattgtcaacatgtaattctaaatatttatcaaattttgaaaagaaaaggagtttaatagccccaatttaaaa
gi|2 : TAGTG-TCA-TATCC-AAC-CGTATTAAGAAAACAGGTTCTGA-AT---GACATAATAA-GTGACA-CACAAAAGGG---TTTTAAAAAGGACGTT--CATA---GG-GGAAAAT-ACTC--GTTT---CCTA-TATG-ACCTTAT-TA-ACTA--TCTAAAG--AAAGA-AAAAC-GGT-TTGGATTA--CTA---CTTCTATT---AGACTTTGA----AAAAGTTTTTGACTCTT-GGAATGGGATTTTATTAG-CAAG--GCTC-TTAAATCATTC--AATTTTGGTGA-CTCACTTATTAAATGG-TTCCA--TACATTT--AT----TCTTCCAATACTAGTTGTGTAA-TAAA---TAA----TGGTCAT-TTTATCAAGGTT-CTTTAGTC-TTGAAAGGG-GT-TGTATAGACAGG-GTGATCCTCT-GGCACG----TATC----TTTTCATC-ATTACAG---TAGAGCT-ACTGGCAATTTCATTG-AAAGAAAA-TGT--TAA-T-A-TC-AAG--GGCATAACTATTGGTGGGAAGAGAATA-AGT-TA-GGACAAT-A-TGCA--GAT-ATT-CATTTC-TAC-TCC-TAGATGGA-ACT-GAACACTCTCT----AAGAGAATCAATGTGC--GTTA--TTGACAAG-TT-T--AGTAG-TG-TCTCA--GACCTGAAAC-TT-AATATT---CCAAAG-TCACAAGC-AG-TTT---------GGA--------TTG-GTAG--T-AAA-ACT--GGTTC-AG--C-AGAAA---C-T-CTGGGTC-C---TGATT--TGCAAAT--ACAAT--GGGAT--CAA-GATAA-GTT--CA-AACTTC-TT------GGAATA-AAT-TTTACCAAAA-ATCT-TG-----AAGAT-ATCATA-----A------CATATAATTAT-TAA--TC----T-AAA-CT-----TTCAGCAATTAAAAG---GTTA-T--TAGG-ATCCT-------GGA-T-----TAGAA----GAGA--TCTAACA--CCA--ATTGGG----AAA--TT--ACAA-TTATTAAAACT-TTAG-CACTGCC-TAAGCTAATATACCGGTATTTTATTTTCAGC-TTTG--------CT------------GAATATACT----C-----G--ATGAAA--AT-TAAAATAT--TATTTAAA-T-TCA--TATGGG-GTTATAA---------GGTGAAAAG---------AAATACACTCATT----GGT-AG--TTATGAGG--AGGGTGGAT----TAAACAT-GATTCACTTGCCCTCTTTT-GTTTCATATATCAAACTA-AAATGGGTTAAAC-GATA-CTTGGCA-AAAATAAAGGAGTTTGGCAGCATTGCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTATTTATCAAAAGAAAAACTTCAAGAGTTTGTATTTTTTATTGATAATGA--TTTTGG--AGAGATGTTATTA---AAGCGTTGATACAGGTT---AAAAAAAGTC----TTGAACATGTATCAGACTACCGTAGCTGTGCTTAGATATTA--GAAA---TTTTTGCTG-T-GTGAAAAAAATGGGCACTTT--AT--TCAA-AACGGACTGTC-AAT---GGTGTTAAAAGATT---AGAGGACCT-G-----TG-A----TCGGAAAATG-------GAAAT-AT-----TAGATGCTTTAATGAAATT-AAGGG-A-----GTGCTTGG--TA---CTAATAAC-TTTTT--AGACTATTTTC--ATGTGAT-ATCAAAAATACCCTTAAAAGTCAAt
gi|3 : C--GTTA--TTGATAAG-TT-TTGAGTTG-TC-TCTCG--CGCTT---ACGTTGAATCTT---TCAAAAGTCACAGGC-AA-TTT-T-------GGT--------TGG-G--G--CAAAA-ATTCAGGCTC-AGATC-TGAAA---A---CTTTGTT-G---TGAACGACGTGAAT-AATGGTTGGGAATGTTAA--AGAA-TTT--AA-GGCTTC-TT------TGAATATAACATTTAC-AAAA-ATCTGCG-----ATG---AGCATGGTTTCA------CGTA--ATTAC-TAT--TC----CGAAA-ATGTGAATTC--CATTTAATCA---TTTAGT--TTGC-ATCCTGGAAATAGGG-TGGATATAAAACCGCGAGA--CTTAACA--CCA----TAGGTTTAAAA--TTGGACAATTTATCAACAC--T-AGCCC-TTCC-CAAGCTCC-TTCCA-----CTTATTTTCCGCATGTGGGCGTGATCCACCA--------AAAAACAAT----TGGATAG--ATGATATCAA-CAGAACAT--T-TTTCAA-TATTATTTATGGGTGATACAA---------AGTAGAAAGGTTGAAAATAAATACAATTGTTTTCAGGTAAA--TTATGAGGCAAGGGGGGATGGGCTTAATATCGGTTCAGTTGTCTCCTTTCAATTTCTTACATCAAGTTAGAAATGGGTCAAACAGGTA-CCTGTCAGAAAATGAGGGAATTGGGCA
gi|3 : GTAATGTTGTTCTGGTAAGAGATGTT-TTATAGAAGTGGTAGCAAAAGCTTATAACAAAAGTTACTTTTGAATGTGTCTAGGAATAC-----TTACAATTAGACATAAAGGAAA----CTTTGTTGATAGT--AAAAAATGGGAATTTTTAGT--ACAA-AATGG-TGGGA-AATAAAGGTATCAAAAaaactcttgtgtatgcatccaagtacttgtaaacctttaaattgtgtgattctatgttttatttgggcaaagaacaaatatgtgattattgcatggcaagttgtaatgttgttctggtaagagatgttttatagaagtggtagcaaaagcttataacaaaagttacttttgaatgtgtctaggaatacttacaattagacataaaggaaactttgttgatagtaaaaaatgggaatttttagtacaaaatggtgggaaataaaggtatcaaaacctttagacattggacttttttaaagtaaaacaagaaatggaactttttaaatgttttaa
gi|4 : cgttattgataagttttgagttgtctctcgcgcttacgttgaatctttcaaaagtcacaggcaattttggttggggcaaaaattcaggctcagatctgaaaactttgttgtgaacgacgtgaataatggttgggaatgttaaagaatttaaggcttctttgaatataacatttacaaaaatctgcgatgagcatggtttcacgtaattactattccgaaaatgtgaattccatttaatcatttagtttgcatcctggaaatagggtggatataaaaccgcgagacttaacaccataggtttaaaattggacaatttatcaacactagcccttcccaagctccttccacttattttccgcatgtgggcgtgatccaccaaaaaacaattggatagatgatatcaacagaacatttttcaatattatttatgggtgatacaaagtagaaaggttgaaaataaatacaattgttttcaggtaaattatgaggcaaggggggatgggcttaatatcggttcagttgtctcctttcaatttcttacatcaagttagaaatgggtcaaacaggtacctgtcagaaaatgagggaattgggcaaaactcttgtgtatgcatccaagtacttgtaaacctttaaattgtgtgattctatgttttatttgggcaaagaacaaatatgtgattattgcatggcaagttTGTAAA-GATAA-GTT--CA-AAGTTT-TT------GGAATA-AAT-TTTACCAAAA-ACCT-TG-----AGGAT-ATCATA-----A---------A--ATTAT-CAA--TC----C-AAA-AT-----TTCAGCAATTAAAAG---GTTA-T--TAGG-ATCCT-------GGG---G---TGAAA----GAGA--TTTAAAA--TCA--ATTAGG----AAAAATT--ACAA-TTATTAAAACT-T-AG-CA-TGCC-TAAGCTGA--TACC-----TTTATTTTCAGC-TTTG--------CCTGACCTTCCAAAGAATATGTT----G-----G--ATGAAAT-AAATAAAATAT--TTTTTCAAAT-TCA--TTTGAG-GTTATAAAACAGAAAAGGTAAAAAG---------AAATACACTCATT----GGT-AG--TTATGAGG--AGGGTGGAT----TAAACAT-GATTCACTTGTCTTCTTTT-GTTTCATATATCACACTA-ACATGGGTTAAAC-GATACCTTAGCA-AAAATAAAGGGATCTGGAAGCATTcctttagacattggacttttttaaagtaaaacaagaaatggaactttttaaatgttttaa
gi|4 : gTTTTATTTATCAAAAGAAAATCTTCAATAGTTTGTATTTTT-ATTGGAAATGAT-TTTTGG--AGAGATGTTATAA---AAGCATTGATACAAGTT----AAAAAAGAC----CTGATCATGTATCACACTAT-----CTACACTCAGGTATTA--GAAA---TGTTT-CTG-T-GTG-AAAAAGTGGGCACGTT--ATAATCAA-AATGGATCGAC-AA-----------------C---AGAGGACCTGG-----TGTA----T--GGAAATAATTGCGTGCAAT-AAAGATCTAGAAGTTTTAATGAA--T-AAGGGCAGGGATGTGCTTGGTTTT---CTA--AACTTTTTT--AGACTATTTTCATATGTGAT-ATC-AAAATG-TCTCAAAAGTCAAtggtacaatgcatgttcaaccttaaaaatatagattttattttttatttatcaaaagaaaatcttcaatagtttgtatttttattggaaatgatttttggagagatgttataaaagcattgatacaagttaaaaaagacctgatcatgtatcacactatctacactcaggtattagaaatgtttctgtgtgaaaaagtgggcacgttataatcaaaatggatcgacaacagaggacctggtgtatggaaataattgcgtgcaataaagatctagaagttttaatgaataagggcagggatgtgcttggttttctaaacttttttagactattttcatatgtgatatcaaaatgtctcaaaagtcaaagagatattattacattgacaaga
gi|5 : gtgtaaagataagttcaaagtttttggaataaattttaccaaaaaccttgaggatatcataaaattatcaatccaaaatttcagcaattaaaaggttattaggatcctggggtgaaagagatttaaaatcaattaggaaaaattacaattattaaaacttagcatgcctaagctgatacctttattttcagctttgcctgaccttccaaagaatatgttggatgaaataaataaaatattttttcaaattcatttgaggttataaaacagaaaaggtaaaaagaaatacactcattggtagttatgaggagggtggattaaacatgattcacttgtcttcttttgtttcatatatcacactaacatgggttaaacgataccttagcaaaaataaagggatctggaagcatttggtacaatgcatgttcaaccttaaaaatatagattttattTAGTGGCCAGTATCCCAACGCGTATTTAAAAA---GGTTCTCACACTTGGACATAATAATGTGACAACACAAAAGGGCTGTTCTATAAAGGACGTTTTCATACGTGGCAGAGAATTACTCCAGTTTTTCCCTAATATGGACCTTAAATACACTACTTCTAAAGTCAAAGACAAAACCAGTATTGGATTAAACTATCTCCTCTATTCTAGGACTTTGATGACAAAGGCTTTTGACTCTTTGGAATGGATTTTTATTAGGCAAGCCGTTCCTTAACTCATTTCAAATGTTGGTGAGCTCACTTATTAAATGGTTTCCATTTACATTTT-ATCTC-TCTCCCAATACTAG-TGTGTAAGT--A-AAT-A--CATGGTCAT-TT-ATCAAGGTTGCTTTAGTCATTGAGAGGGCGTATGTAGGAACAGGAGTGATCCTCTGGGCACGGCGTTATCCTCTCTTTCATCGATTACAGTACTAGAGCTAACTGGCAATTTCATTGAAAAGAAAAATGA-TTAACT-ACTC-AAGAAGGCATAT-CTTTGG-GGGAAGAGAATAAAGTATAGGGACAATCACTGCGACGATGATTCCATTTCTTACCTCCTTAGATGGA-ACTCGAACAC-CTCTTAACGAGAGATCCAATGTGCTGATTATCTTGACAAGATT-T--AGTAGCTGCTCTCATCGGCCTGAA---CT-AATATCCTATCAAAA-TCACAAGCTAG-TCTAT-------GGAAAACTGGTTAG-GT-G--TTAAACACT-GGCCTCAAG--C-AGAAA---CAT-CT-TGTT-GGACTGATagagatattattacattgacaaga
gi|8 : TGCTATTA---AAGCAATAGCAAACGTT---AAGAAAAGTT----CTGAACATGTATTAGACTAC-----TTGAACTTAGATATTA--GAAA---TGTTTGCTG-T-GTA-AAAAAATGGGAAATTT--CT--TCTA-AATGGGTTGGT-AAT---GGTGTTAAA--ATCTAAAGAGGTCC--------CG-ATCTCT--GAAAACA-------GAAAT-A--------------------------AAAGA-A-----GTGCTTGG--CA---ATAATA---TTTTTAAAGATTATTTTC--ATGTAGT-ATCAAATATACCCTAAAAAGTCAA
10 sequences could not be aligned to this reference sequence:
Unaligned ( gi|6 ): TAGGAATTGAGAGCCCCAACACTAAAAACAAAATAAGTGGGGAAACTTTATTAGATGAATCCATATCTGATAAAGACTGGAGATTTTATTTTGTAAATGCATCATAATGTACAAAAGGATACAAAATGAATTTATTTTCAATACCGAATCTGATGAATTATATTACTACCAACTCTTTTCTTCATAAAATTAAAATTTCAGATAATATTTGCGTATTTTTTTGTACTGTGAAGCAGAAACAATAACTCGCATATTTTATGATTGTGTACACATCAACTTATTTTGAATGATTTTTGTGCAGTGGTTTAATGTATAAGATATCAAAAAGAAAATTGTTTTACTCGGTAATAATGAAGAAAAGCTGTTAGAAAATTGTCTTTTATTGGTTGCAGAAAGTGTATTATTTTTTTAAAATCACAATTTAAGGCCTTAGCCCAAAAATTTTCCGAGGCAGTGACTTTATTTAAGTATTTAGAAATAGGAATTACTGTGAAAATGTATTCAAATGTAAATCCAAAATACTTGCAAAGGGCAATATATGATATTGTACAAAACAAGTAAGAATGGAAAACCAGGTATATATAAG
Unaligned ( gi|7 ): AAAAAGTGGGAAACTTATATAGATAACCTTATCTGACAAAGACTGGAAATTTTATTTTTAAATGTTTTCGTTATGTACGAAGGATACAAAAATAATTTATTATTCAAATACGCGAAATATCTGATGAACTATAATTGCTACCAACTCCTTATCATTTAAAATCAAACTTTCTGATAGAAGATTTTTGTGTTACTTTGTTACACATCCTGAGCAGAAACAATTAACTTGTACCATACTTCTCACATGATTTGATGTGGGATAGGTCCAATCAAGAGTGTTATTTGGAGATATGACTTTATAGGTGAGCTGGAATTTAATGATAATTCTGAAAAACATGATTAGATTAAATACATCAAAAAGCAATTAATAACTTGTGTTGGTGTATATACTTTTGTTGTAATCA
Unaligned ( gi|9 ): TTACATTGCTATAACTCGTTCCTTCACAAACTTAAACTTGTAGAAAATGACAAATGTTCTCTTTGTAAATGTGAAAGAGAAACAATTTCTCATATATTTATGATTGTAATATCACCCTAGCCTTTTGGGGAGATTTTGTGAAATGGAACAGTGCTGTTGAAAAGGATTATAAGATTTCGAAAAGAATTGTATTACTTGGANNNNNNNNNNNNNNNNNNNNNNNNNAATATATCTTTATTA
Unaligned ( gi|10 ): AAGAGAGATATATTATTGCATTGAAAGAAGGTAAATAGATGCAAACGATGAACATACTAAAAATAATAATTATTGTCAACATGTAATATGAAATATTTATATCAAATTTTTAAAAGAAAGGAGATTTATAGCCCAACATAAA
Unaligned ( gi|11 ): AGAGAGATATATTATTGCATTGAAAGAAGGTAAAATAGATGCAAACGATGAACATACTAAAAAATAATAATTATTGTCAACATGTAATATGAATATTTATATCAAATTTTTAAAAGAAAGGAGATATACCCCAACATAAAA
Unaligned ( gi|12 ): TATTATTGCATTGAAAGAAGGTAAAATAGATGCAAACGATGAACATACTAAAAATAATAATTATTGTCAACATGTAATATGAAATATTTATATCAAATTTTAAAAGAAAGGAGATTATAGCCCCAACATAAA
Unaligned ( gi|13 ): AGCTAGGATCAGAATAATATGAACATTCTGAAATATATCTGTTGTCCCATAAAAATGTTAGTGAAATTGTAGATACGAAATATTTATATAAACT
Unaligned ( gi|14 ): GAGATATTATTGGATTGAAAGAAGGTAGGATAGATAAAAATAATGAAGTACGGAATGTGTCGTCAACATGTAATTCGAAATATTTATATCAA
Unaligned ( gi|15 ): AAGGATACAAAAATAATTTATTTTCAATAACGAATACTGATTAATTATATTGCTACCAACTCCTTTCTTC
Unaligned ( gi|16 ): TGAAAATGTATTTGAATGTAAATCTAAAATACTAAGCAAATGGGCAAATAT
Alignments
lowQualScore : 11111111111111111111111111111111111111111111
lowQualScore : 1 1 1 1 222 222222 1 1 222 11 222 1 1 11 222 1 1 11 1 11 11 1 1 1 11 222 222 2222 1 1 11 1 11 1 11 44444444 33333333333333 1 1 22 1 1 444444444 1 1 333333333333 1 222 1 1 22 22222 1 11 1 1 1 2222 222222222 22222 11111 1 1 1 2222 11 22 1 1111 1 1 11 111111 111 1 1 1 66666666666666666666666666666666 1 11 1 11 1 444444444444444444444444444 333333333 11 1 11 1 1 222222 1 1 1 1 22222 111 555555555555555555 1 11 222222 1 22222 1111 1111 1 55555555555555555 2222 11 11 111 3333333333333 11 2222222222 1 3333333333333 1 00000000000000000000000000000000000000000000 22 1 1111 111 11 1 4444444444444444444444444444 1111 11 11 2222 1 11 1 1 1 1 7777777777777777777777777777777777777777777777777777777777777777777777777 22 11 1111 1111 22222 222222 11 11111 11 111111 1111 11111111 444444444444444444444444444444444444444444 2222 2222222 2222222 1 11 11 1 1
lowQualScore : 5 5 5 5 1 111 1 555555 5 5 000 1 88 000 5 5 88 111 5 5 66 5 88 88 5 5 5 88 111 111 3333 5 1 5 77 5 1 88 1 6 7 3 6 88 55555555 7 55555555555555 7 3 3 00 3 2 111111111 3 7 3 111111111111 3 6 333 3 7 3 6 7 55 22222 3 88 7 3 3 2 5555 333333333 44444 66666 3 3 2 7 8888 33 33 3 0 4444 0 0 33 2 555555 777 0 0 0 33333333333333333333333333333333 0 77 0 33 0 444444444444444444444444444 0 333333333 6 1 22 0 33 0 0 888888 9 0 2 0 0 55555 0 000 999999999999999999 0 33 555555 0 55555 3 3 8888 4444 0 00000000000000000 1111 33 0 33 777 1 1111111111111 33 0 1 0000000000 2 0 0 1111111111111 0 1 66666666666666666666666666666666666666666666 2 55 0 4444 111 33 0 7777777777777777777777777777 2 7777 8 11 33 1111 0 44 3 3 3 3 3333333333333333333333333333333333333333333333333333333333333333333333333 1 7 55 33 0 4444 1 22 4444 33333 3 333333 1 0 1 11 55555 8 8 11 111111 8 3 1 8 4444 77777777 2 999999999999999999999999999999999999999999 3 0 0000 6666666 3333333 3 3 0 33 3 33 0 3 5 0
lowQualScore : . . . . . ... . ...... . . ... . .. ... . . .. ... . . .. . .. .. . . . .. ... ... .... . . . .. . . .. . . . . . .. ........ . .............. . . . .. . . ......... . . . ............ . . ... . . . . . .. ..... . .. . . . . .... ......... ..... ..... . . . . .... .. .. . . .... . . .. . ...... ... . . . ................................ . .. . .. . ........................... . ......... . . .. . .. . . ...... . . . . . ..... . ... .................. . .. ...... . ..... . . .... .... . ................. .... .. . .. ... . ............. .. . . .......... . . . ............. . . ............................................ . .. . .... ... .. . ............................ . .... . .. .. .... . .. . . . . ......................................................................... . . .. .. . .... . .. .... ..... . ...... . . . .. ..... . . .. ...... . . . . .... ........ . .......................................... . . .... ....... ....... . . . .. . .. . . . .
lowQualScore : 0 0 0 0 0 000 0 000000 5 5 555 0 55 555 0 5 00 000 5 0 55 0 00 00 0 0 5 55 000 000 5555 5 0 0 55 0 0 00 0 7 3 3 7 33 33333333 3 77777777777777 3 3 3 00 3 0 333333333 3 3 3 777777777777 3 7 333 3 3 3 7 3 33 00000 3 33 3 3 3 0 0000 000000000 00000 77777 3 3 0 3 3333 88 88 2 0 8888 0 0 88 5 222222 555 0 0 0 22222222222222222222222222222222 0 00 0 88 0 222222222222222222222222222 7 333333333 5 0 55 0 88 0 0 888888 0 0 5 0 0 00000 2 222 888888888888888888 0 88 222222 0 00000 2 2 5555 8888 0 22222222222222222 2222 88 2 88 000 2 8888888888888 22 8 0 5555555555 5 0 2 2222222222222 0 0 88888888888888888888888888888888888888888888 0 55 0 5555 000 88 0 5555555555555555555555555555 0 0000 0 00 88 2222 0 00 3 3 3 3 0000000000000000000000000000000000000000000000000000000000000000000000000 0 3 55 88 8 8888 0 22 8888 44444 2 222222 4 8 4 00 88888 0 0 22 888888 0 8 4 0 8888 66666666 5 000000000000000000000000000000000000000000 5 2 8888 0000000 5555555 2 2 0 88 2 88 0 2 0 2
consensus : TAGTGGCCAGTATCCCAACGCGTATTNAGAAAACAGGTTCTNACACTTGGACATAATAATGTGACAACACAAAAGGGCTGTTCTANAAAGGACGTTTTCATACGTGGCGGAGAATTACTCCAGTTTTTCCCTAATATGGACCTTANATACACTACTTCTAAAGTCAAAGACAAAACCGGTATTGGATTAAACTATCTCCTCTATTCTAGGACTTTGATGACAAAGGCTTTTGACTCTTTGGAATGGGNTTTTATTAGGCAAGCCGCTCCTTAANTCATTCCAAATNTTGGTGAGCTCACTTATTAAATGG-TTCCA--TACATTTT-ATCT--TCTTCCAATACTAGTTGTGTAA-TAAA-AATAA--CATGGTCAT-TT-ATCAAGGTT-CTTTAGTC-TTGAGAGGGCGT-TGTA--A-ACAGG-GTGATCCTCT-GGCACG--GTTATC----TTTTCATC-ATTACAG---TAGAGCT-ACTGGCAATTTCATTG-AAAGAAAAATGT-CTAA-T-A-TC-AAG--GGCATAA-TATTGG-GGGAAGAGAATAGAGT-TA-GGACAAT-ACTGCG--GAT-ATT-CATTTC-TACCTCC-TAGATGGA-ACTCGAACACTCTCT----AAGAGAATCAATGTGC--GTTA--TTGACAAG-TT-T--AGTAG-TG-TCTCA--GGCCTGAAAC-TT-AATATT---TCAAAA-TCACAAGC-AG-TTT-T-------GGA--------TNG-GTAG--TNAAA-ACT-AGGCTC-AG--C-AGAAA---C-T-CTGTGTC-G---TGATC--CGCGAAT-AACGGC--GGGATGTNAA-GATAA-GTT--CA-AACTTC-TT------GGAATACAAC-TTTACCAAAA-ATCT-CG-----AGGAT-ATCATA-----A------CGTA--ATTAT-CAA--TC----C-AAA-AT-----TTCAGCAATTAAAAG---NTTA-T--TAGG-ATCCT-------GGG-TGG---TAGAA----GAGA--TCTAACA--CCA--ATTAGG----AAA--TT--ACAA-TTATTAANACT-T-AG-CA-TGCC-TAAGCTGA-ATACN-----CTTATTTTCAGC-TNTG--------CC------------GAANATANT----C-----G--ACGAAAT-AA-TAAAATAT--TATTTCAA-T-TCA--TATGGG-GTTATAA---------GGTAAAAAG---------AAATACACTCGTT----GGT-AG--TTATGAGG--AGGGTGGAT----TAAACAT-GATTCACTTGTCTTCTTTC-GTTTCATATATCAAACTA-AAATGGGTTAAAC-GATA-CTTGGCA-AAAATAAAGGAATTTGGCAGCATTGCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTATTTATCAAAAGAAAANCTTCAAGAGTTTGTATTTTTTATTGGTAATGAT-TTTTGG--AGAGATGTTATTA---AAGCGTTGATACAGGTT---AAAAAAAGTC----CTGAACATGTATCAGACTAC-----CTGCGCTTAGATATTA--GAAA---TNTTTGCTG-T-GTG-AAAAAATGGGCACTTT--AT--TCAA-AATGGATTGGC-AAT---GGTGTTAAAAGATC---AGAGGACCT-GCG-A----T--GAAAATA-------GAAAT-A------TAGATGCTTTAATGAA--T-AAGGG-A-----GTGCTTGG--TA---CTAATAAC-TTTTT--AGACTATTTTC--ATGTGAT-ATCAAAAATACCCTCAAAAGTCAA
Reference ( family-828 ) : TAGTGGCCAGTATCCCAACGCGTATTNAGAAAACAGGTTCTNACACTTGGACATAATAATGTGACAACACAAAAGGGCTGTTCTANAAAGGACGTTTTCATACGTGGCGGAGAATTACTCCAGTTTTTCCCTAATATGGACCTTANATACACTACTTCTAAAGTCAAAGACAAAACCGGTATTGGATTAAACTATCTCCTCTATTCTAGGACTTTGATGACAAAGGCTTTTGACTCTTTGGAATGGGNTTTTATTAGGCAAGCCGCTCCTTAANTCATTCCAAATNTTGGTGAGCTCACTTATTAAATGG-TTCCA--TACATTTT-ATCT--TCTTCCAATACTAGTTGTGTAA-TAAA-AATAA--CATGGTCAT-TT-ATCAAGGTT-CTTTAGTC-TTGAGAGGGCGT-TGTA-GA-ACAGG-GTGATCCTCT-GGCACG--GTTATC----TTTTCATC-ATTACAG---TAGAGCT-ACTGGCAATTTCATTG-AAAGAAAAATGT-CTAA-T-A-TC-AAG--GGCATAA-TATTGG-GGGAAGAGAATAGAGT-TA-GGACAAT-ACTGCG--GAT-ATT-CATTTC-TACCTCC-TAGATGGA-ACTCGAACACTCTCT----AAGAGAATCAATGTGC--GTTA--TTGACAAG-TT-T--AGTAG-TG-TCTCA--GGCCTGAAAC-TT-AATATT---TCAAAA-TCACAAGC-AG-TTT-T-------GGA--------TNG-GTAG--TNAAA-ACT-AGGCTC-AG--C-AGAAA---C-T-CTGTGTC-G---TGATC--CGCGAAT-AACGGC--GGGATGTNAA-GATAA-GTT--CA-AACTTC-TT------GGAATACAAC-TTTACCAAAA-ATCT-CG-----AGGAT-ATCATA-----A------CGTA--ATTAT-CAA--TC----C-AAA-AT-----TTCAGCAATTAAAAG---NTTA-T--TAGG-ATCCT-------GGG-TGG---TAGAA----GAGA--TCTAACA--CCA--ATTAGG----AAA--TT--ACAA-TTATTAANACT-T-AG-CA-TGCC-TAAGCTGA-ATACN-----CTTATTTTCAGC-TNTG--------CC------------GAANATANT----C-----G--ACGAAAT-AA-TAAAATAT--TATTTCAA-T-TCA--TATGGG-GTTATAA---------GGTAAAAAG---------AAATACACTCGTT----GGT-AG--TTATGAGG--AGGGTGGAT----TAAACAT-GATTCACTTGTCTTCTTTC-GTTTCATATATCAAACTA-AAATGGGTTAAAC-GATA-CTTGGCA-AAAATAAAGGAATTTGGCAGCATTGCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTATTTATCAAAAGAAAANCTTCAAGAGTTTGTATTTTTTATTGGTAATGAT-TTTTGG--AGAGATGTTATTA---AAGCGTTGATACAGGTT---AAAAAAAGTC----CTGAACATGTATCAGACTAC-----CTGCGCTTAGATATTA--GAAA---TNTTTGCTG-T-GTG-AAAAAATGGGCACTTT--AT--TCAA-AATGGATTGGC-AAT---GGTGTTAAAAGATC---AGAGGACCT-GTG-A----T--GAAAATA-------GAAAT-A------TAGATGCTTTAATGAA--T-AAGGG-A-----GTGCTTGG--TA---CTAATAAC-TTTTT--AGACTATTTTC--ATGTGAT-ATCAAAAATACCCTCAAAAGTCAA
gi|1 : GAGATCACTTATTGA-TGG-TTC-A--TACATTTTCATTTGATATTCCAATACTATTTGTGTAA-TAAAGAATAAAACATGG-CATATT-ATCAAGGTT--TTTAGTC-TTGAGAGGGTGT-------A-ACAGG-GTGA--CTCT-GACACC--GT-ATC----TTTTCATC-ATTA-AG---TAGAGCT-AC-GACAATTTCATTG-AAA---AAATGTTCTAA-TTA-TCGAAG--GGCA-AA-TATGGG-GGAAAGAGAATAGAGT-T---GACAAT-ATT-CA--GAT-A----ATTTC-T--CTCC-TAGATGGACACTTGAACACTCGCT----AAGAGAATCAATGTGT--GTTAA-TTG-CAAG-TTCT--AGTAG-TG-TCTCA--GGCCTGAAAT-TG-AATATT---TCAAAA-TCACAAGC-AGATTT-TTCGTTGAGGA--------TCGTGTAGCTTCAAA-TCG-AGGTTC-AG--CTAGAAATACC-TACTGTGCCTA---TGTT----GCAAATCAAC-GC--GGGCTATAAAGGATAATGTTTGCACAACTCCGTTTTAATGGAAACACAAC-TTTACCAAAACATAT-CGTTAGCAGAATAATCATA-----AACTATTCAAA--GTCATCCAAGTTCTTATC-AAATAT-----TCCAGCAA-TAAAAGAGATTTA-TCCTAGGAATCCT-------GGGTTAA---TAGAA----AAGACGTCTAATACTCCAACATCTGG----AG-------ACA-------AACACTGT-CG-C----CCATAACCCGA-ATAGA-----C--ATGATCAAC-TGTG--------AT------------AAAAATAATTTTGC-----GTAACAAAA--AA-TAATATGTTCTATTTCAA-T-TCA--TATGGG-GTTATA------------T---AAG---------ACACGCACACAGG----AGT-AGAATTATGAG
gi|1 : tggtagagaTTTTTTTTTTCAAAAGAAAAGTTTCAAGAGTTTGTGTTTTTTTGTGATAATGA--TTTTGG--AGAGATTTAATT----AAGCGTTGATAC-GGTT---AAAAAAAGT-----CTGAA-ATGTATCAGACTA------CTGTGC-TAGATATAA--GAAAATTTTTTTGCTG-T-GTG-AAAAAAT-GGCACTTT--AT--TCAACAATGGACTGACAAAT---GGTGTTAAAAGATT---AGA-GACCT-GGT-A----T---ATGATAT------GAAATAA------TAGATGCTTTAATGAA--TCAAGGG-A-----GTGCTTGG--TAACTCTAATAAC-TTTAT--AGAC-ATTTTC--ATGTGATAATCAAAAATA-CATCACAAATCAAcaaatacacatccctatatattaatcatgttgtggaggaggtgagactcacacacgtggaatatcacgaactttagactcatccgtgttttgtttcgattacacacagaatggaatggtgtaaaaggctgtagtagaagtatggggcaatgatagagattaacggtagtctggcagctatattatgcttaaaatggtcaatttcacccttaagatatatagatttcaattttttttttcaaaagaaaagtttcaagagtttgtgtttttttgtgataatgattttggagagatttaattaagcgttgatacggttaaaaaaagtctgaaatgtatcagactactgtgctagatataagaaaatttttttgctgtgtgaaaaaatggcactttattcaacaatggactgacaaatggtgttaaaagattagagacctggtatatgatatgaaataatagatgctttaatgaatcaagggagtgcttggtaactctaataactttatagacattttcatgtgataatcaaaaatacatcacaaatcaaaagatattattggattgaaagaaaggtagaagaataaaataatgaattaatgatgttcgtgcataatttattgtcaacatgtaattctaaatatttatcaaattttgaaaagaaaaggagtttaatagccccaatttaaaa
gi|17 : tggtagagagagatcacttattgatggttcatacattttcatttgatattccaatactatttgtgtaataaagaataaaacatggcatattatcaaggtttttagtcttgagagggtgtaacagggtgactctgacaccgtatcttttcatcattaagtagagctacgacaatttcattgaaaaaatgttctaattatcgaagggcaaatatgggggaaagagaatagagttgacaatattcagataatttctctcctagatggacacttgaacactcgctaagagaatcaatgtgtgttaattgcaagttctagtagtgtctcaggcctgaaattgaatatttcaaaatcacaagcagatttttcgttgaggatcgtgtagcttcaaatcgaggttcagctagaaatacctactgtgcctatgttgcaaatcaacgcgggctataaaggataatgtttgcacaactccgttttaatggaaacacaactttaccaaaacatatcgttagcagaataatcataaactattcaaagtcatccaagttcttatcaaatattccagcaataaaagagatttatcctaggaatcctgggttaatagaaaagacgtctaatactccaacatctggagacaaacactgtcgcccataacccgaatagacatgatcaactgtgataaaaataattttgcgtaacaaaaaataatatgttctatttcaattcatatggggttatataagacacgcacacaggagtagaattatgagcaaatacacatccctatatattaatcatgttgtggaggaggtgagactcacacacgtggaatatcacgaactttagactcatccgtgttttgtttcgattacacacagaatggaatggtgtaaaaggctgtagtagaagtatggggcaatgatagagattaacggtagtctggcagctatattatgcttaaaatggtcaatttcacccttaagatatatagatttcaaTT----GGT-AG--TTATGAGG--AGGGTGGAT----TAAACAT-CATTCAaagatattattggattgaaagaaaggtagaagaataaaataatgaattaatgatgttcgtgcataatttattgtcaacatgtaattctaaatatttatcaaattttgaaaagaaaaggagtttaatagccccaatttaaaa
gi|2 : TAGTG-TCA-TATCC-AAC-CGTATTAAGAAAACAGGTTCTGA-AT---GACATAATAA-GTGACA-CACAAAAGGG---TTTTAAAAAGGACGTT--CATA---GG-GGAAAAT-ACTC--GTTT---CCTA-TATG-ACCTTAT-TA-ACTA--TCTAAAG--AAAGA-AAAAC-GGT-TTGGATTA--CTA---CTTCTATT---AGACTTTGA----AAAAGTTTTTGACTCTT-GGAATGGGATTTTATTAG-CAAG--GCTC-TTAAATCATTC--AATTTTGGTGA-CTCACTTATTAAATGG-TTCCA--TACATTT--AT----TCTTCCAATACTAGTTGTGTAA-TAAA---TAA----TGGTCAT-TTTATCAAGGTT-CTTTAGTC-TTGAAAGGG-GT-TGTA-TAGACAGG-GTGATCCTCT-GGCACG----TATC----TTTTCATC-ATTACAG---TAGAGCT-ACTGGCAATTTCATTG-AAAGAAAA-TGT--TAA-T-A-TC-AAG--GGCATAACTATTGGTGGGAAGAGAATA-AGT-TA-GGACAAT-A-TGCA--GAT-ATT-CATTTC-TAC-TCC-TAGATGGA-ACT-GAACACTCTCT----AAGAGAATCAATGTGC--GTTA--TTGACAAG-TT-T--AGTAG-TG-TCTCA--GACCTGAAAC-TT-AATATT---CCAAAG-TCACAAGC-AG-TTT---------GGA--------TTG-GTAG--T-AAA-ACT--GGTTC-AG--C-AGAAA---C-T-CTGGGTC-C---TGATT--TGCAAAT-A-CAAT--GGGAT--CAA-GATAA-GTT--CA-AACTTC-TT------GGAATA-AAT-TTTACCAAAA-ATCT-TG-----AAGAT-ATCATA-----A------CATATAATTAT-TAA--TC----T-AAA-CT-----TTCAGCAATTAAAAG---GTTA-T--TAGG-ATCCT-------GGA-T-----TAGAA----GAGA--TCTAACA--CCA--ATTGGG----AAA--TT--ACAA-TTATTAAAACT-TTAG-CACTGCC-TAAGCTAATATACCGGTATTTTATTTTCAGC-TTTG--------CT------------GAATATACT----C-----G--ATGAAA--AT-TAAAATAT--TATTTAAA-T-TCA--TATGGG-GTTATAA---------GGTGAAAAG---------AAATACACTCATT----GGT-AG--TTATGAGG--AGGGTGGAT----TAAACAT-GATTCACTTGCCCTCTTTT-GTTTCATATATCAAACTA-AAATGGGTTAAAC-GATA-CTTGGCA-AAAATAAAGGAGTTTGGCAGCATTGCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTATTTATCAAAAGAAAAACTTCAAGAGTTTGTATTTTTTATTGATAATGA--TTTTGG--AGAGATGTTATTA---AAGCGTTGATACAGGTT---AAAAAAAGTC----TTGAACATGTATCAGACTACCGTAGCTGTGCTTAGATATTA--GAAA---TTTTTGCTG-T-GTGAAAAAAATGGGCACTTT--AT--TCAA-AACGGACTGTC-AAT---GGTGTTAAAAGATT---AGAGGACCT-GTG-A----TCGGAAAATG-------GAAAT-AT-----TAGATGCTTTAATGAAATT-AAGGG-A-----GTGCTTGG--TA---CTAATAAC-TTTTT--AGACTATTTTC--ATGTGAT-ATCAAAAATACCCTTAAAAGTCAAt
gi|3 : C--GTTA--TTGATAAG-TT-TTGAGTTG-TC-TCTCG--CGCTT---ACGTTGAATCTT---TCAAAAGTCACAGGC-AA-TTT-T-------GGT--------TGG-G--G--CAAAA-ATTCAGGCTC-AGATC-TGAAA---A---CTTTGTT-G---TGAACGACGTGAAT-AATGGTTGGGAATGTTAA--AGAA-TTT--AA-GGCTTC-TT------TGAATATAACATTTAC-AAAA-ATCTGCG-----ATG---AGCATGGTTTCA------CGTA--ATTAC-TAT--TC----CGAAA-ATGTGAATTC--CATTTAATCA---TTTAGT--TTGC-ATCCTGGAAATAGGG-TGGATATAAAACCGCGAGA--CTTAACA--CCA----TAGGTTTAAAA--TTGGACAATTTATCAACAC--T-AGCCC-TTCC-CAAGCTCC-TTCCA-----CTTATTTTCCGCATGTGGGCGTGATCCACCA--------AAAAACAAT----TGGATAG--ATGATATCAA-CAGAACAT--T-TTTCAA-TATTATTTATGGGTGATACAA---------AGTAGAAAGGTTGAAAATAAATACAATTGTTTTCAGGTAAA--TTATGAGGCAAGGGGGGATGGGCTTAATATCGGTTCAGTTGTCTCCTTTCAATTTCTTACATCAAGTTAGAAATGGGTCAAACAGGTA-CCTGTCAGAAAATGAGGGAATTGGGCA
gi|3 : GTAATGTTGTTCTGGTAAGAGATGTT-TTATAGAAGTGGTAGCAAAAGCTTATAACAAAAGTTACTTTTGAATGTGTCTAGGAATAC-----TTACAATTAGACATAAAGGAAA----CTTTGTTGATAGT--AAAAAATGGGAATTTTTAGT--ACAA-AATGG-TGGGA-AATAAAGGTATCAAAAaaactcttgtgtatgcatccaagtacttgtaaacctttaaattgtgtgattctatgttttatttgggcaaagaacaaatatgtgattattgcatggcaagttgtaatgttgttctggtaagagatgttttatagaagtggtagcaaaagcttataacaaaagttacttttgaatgtgtctaggaatacttacaattagacataaaggaaactttgttgatagtaaaaaatgggaatttttagtacaaaatggtgggaaataaaggtatcaaaacctttagacattggacttttttaaagtaaaacaagaaatggaactttttaaatgttttaa
gi|4 : cgttattgataagttttgagttgtctctcgcgcttacgttgaatctttcaaaagtcacaggcaattttggttggggcaaaaattcaggctcagatctgaaaactttgttgtgaacgacgtgaataatggttgggaatgttaaagaatttaaggcttctttgaatataacatttacaaaaatctgcgatgagcatggtttcacgtaattactattccgaaaatgtgaattccatttaatcatttagtttgcatcctggaaatagggtggatataaaaccgcgagacttaacaccataggtttaaaattggacaatttatcaacactagcccttcccaagctccttccacttattttccgcatgtgggcgtgatccaccaaaaaacaattggatagatgatatcaacagaacatttttcaatattatttatgggtgatacaaagtagaaaggttgaaaataaatacaattgttttcaggtaaattatgaggcaaggggggatgggcttaatatcggttcagttgtctcctttcaatttcttacatcaagttagaaatgggtcaaacaggtacctgtcagaaaatgagggaattgggcaaaactcttgtgtatgcatccaagtacttgtaaacctttaaattgtgtgattctatgttttatttgggcaaagaacaaatatgtgattattgcatggcaagttTGTAAA-GATAA-GTT--CA-AAGTTT-TT------GGAATA-AAT-TTTACCAAAA-ACCT-TG-----AGGAT-ATCATA-----A---------A--ATTAT-CAA--TC----C-AAA-AT-----TTCAGCAATTAAAAG---GTTA-T--TAGG-ATCCT-------GGG---G---TGAAA----GAGA--TTTAAAA--TCA--ATTAGG----AAAAATT--ACAA-TTATTAAAACT-T-AG-CA-TGCC-TAAGCTGA--TACC-----TTTATTTTCAGC-TTTG--------CCTGACCTTCCAAAGAATATGTT----G-----G--ATGAAAT-AAATAAAATAT--TTTTTCAAAT-TCA--TTTGAG-GTTATAAAACAGAAAAGGTAAAAAG---------AAATACACTCATT----GGT-AG--TTATGAGG--AGGGTGGAT----TAAACAT-GATTCACTTGTCTTCTTTT-GTTTCATATATCACACTA-ACATGGGTTAAAC-GATACCTTAGCA-AAAATAAAGGGATCTGGAAGCATTcctttagacattggacttttttaaagtaaaacaagaaatggaactttttaaatgttttaa
gi|4 : gTTTTATTTATCAAAAGAAAATCTTCAATAGTTTGTATTTTT-ATTGGAAATGAT-TTTTGG--AGAGATGTTATAA---AAGCATTGATACAAGTT----AAAAAAGAC----CTGATCATGTATCACACTAT-----CTACACTCAGGTATTA--GAAA---TGTTT-CTG-T-GTG-AAAAAGTGGGCACGTT--ATAATCAA-AATGGATCGAC-AA-----------------C---AGAGGACCTGGTGTA----T--GGAAATAATTGCGTGCAAT-AAAGATCTAGAAGTTTTAATGAA--T-AAGGGCAGGGATGTGCTTGGTTTT---CTA--AACTTTTTT--AGACTATTTTCATATGTGAT-ATC-AAAATG-TCTCAAAAGTCAAtggtacaatgcatgttcaaccttaaaaatatagattttattttttatttatcaaaagaaaatcttcaatagtttgtatttttattggaaatgatttttggagagatgttataaaagcattgatacaagttaaaaaagacctgatcatgtatcacactatctacactcaggtattagaaatgtttctgtgtgaaaaagtgggcacgttataatcaaaatggatcgacaacagaggacctggtgtatggaaataattgcgtgcaataaagatctagaagttttaatgaataagggcagggatgtgcttggttttctaaacttttttagactattttcatatgtgatatcaaaatgtctcaaaagtcaaagagatattattacattgacaaga
gi|5 : gtgtaaagataagttcaaagtttttggaataaattttaccaaaaaccttgaggatatcataaaattatcaatccaaaatttcagcaattaaaaggttattaggatcctggggtgaaagagatttaaaatcaattaggaaaaattacaattattaaaacttagcatgcctaagctgatacctttattttcagctttgcctgaccttccaaagaatatgttggatgaaataaataaaatattttttcaaattcatttgaggttataaaacagaaaaggtaaaaagaaatacactcattggtagttatgaggagggtggattaaacatgattcacttgtcttcttttgtttcatatatcacactaacatgggttaaacgataccttagcaaaaataaagggatctggaagcatttggtacaatgcatgttcaaccttaaaaatatagattttattTAGTGGCCAGTATCCCAACGCGTATTTAAAAA---GGTTCTCACACTTGGACATAATAATGTGACAACACAAAAGGGCTGTTCTATAAAGGACGTTTTCATACGTGGCAGAGAATTACTCCAGTTTTTCCCTAATATGGACCTTAAATACACTACTTCTAAAGTCAAAGACAAAACCAGTATTGGATTAAACTATCTCCTCTATTCTAGGACTTTGATGACAAAGGCTTTTGACTCTTTGGAATGGATTTTTATTAGGCAAGCCGTTCCTTAACTCATTTCAAATGTTGGTGAGCTCACTTATTAAATGGTTTCCATTTACATTTT-ATCTC-TCTCCCAATACTAG-TGTGTAAGT--A-AAT-A--CATGGTCAT-TT-ATCAAGGTTGCTTTAGTCATTGAGAGGGCGTATGTAGGA-ACAGGAGTGATCCTCTGGGCACGGCGTTATCCTCTCTTTCATCGATTACAGTACTAGAGCTAACTGGCAATTTCATTGAAAAGAAAAATGA-TTAACT-ACTC-AAGAAGGCATAT-CTTTGG-GGGAAGAGAATAAAGTATAGGGACAATCACTGCGACGATGATTCCATTTCTTACCTCCTTAGATGGA-ACTCGAACAC-CTCTTAACGAGAGATCCAATGTGCTGATTATCTTGACAAGATT-T--AGTAGCTGCTCTCATCGGCCTGAA---CT-AATATCCTATCAAAA-TCACAAGCTAG-TCTAT-------GGAAAACTGGTTAG-GT-G--TTAAACACT-GGCCTCAAG--C-AGAAA---CAT-CT-TGTT-GGACTGATagagatattattacattgacaaga
gi|8 : TGCTATTA---AAGCAATAGCAAACGTT---AAGAAAAGTT----CTGAACATGTATTAGACTAC-----TTGAACTTAGATATTA--GAAA---TGTTTGCTG-T-GTA-AAAAAATGGGAAATTT--CT--TCTA-AATGGGTTGGT-AAT---GGTGTTAAA--ATCTAAAGAGGTCC---CG-ATCTCT--GAAAACA-------GAAAT-A--------------------------AAAGA-A-----GTGCTTGG--CA---ATAATA---TTTTTAAAGATTATTTTC--ATGTAGT-ATCAAATATACCCTAAAAAGTCAA
10 sequences could not be aligned to this reference sequence:
Unaligned ( gi|6 ): TAGGAATTGAGAGCCCCAACACTAAAAACAAAATAAGTGGGGAAACTTTATTAGATGAATCCATATCTGATAAAGACTGGAGATTTTATTTTGTAAATGCATCATAATGTACAAAAGGATACAAAATGAATTTATTTTCAATACCGAATCTGATGAATTATATTACTACCAACTCTTTTCTTCATAAAATTAAAATTTCAGATAATATTTGCGTATTTTTTTGTACTGTGAAGCAGAAACAATAACTCGCATATTTTATGATTGTGTACACATCAACTTATTTTGAATGATTTTTGTGCAGTGGTTTAATGTATAAGATATCAAAAAGAAAATTGTTTTACTCGGTAATAATGAAGAAAAGCTGTTAGAAAATTGTCTTTTATTGGTTGCAGAAAGTGTATTATTTTTTTAAAATCACAATTTAAGGCCTTAGCCCAAAAATTTTCCGAGGCAGTGACTTTATTTAAGTATTTAGAAATAGGAATTACTGTGAAAATGTATTCAAATGTAAATCCAAAATACTTGCAAAGGGCAATATATGATATTGTACAAAACAAGTAAGAATGGAAAACCAGGTATATATAAG
Unaligned ( gi|7 ): AAAAAGTGGGAAACTTATATAGATAACCTTATCTGACAAAGACTGGAAATTTTATTTTTAAATGTTTTCGTTATGTACGAAGGATACAAAAATAATTTATTATTCAAATACGCGAAATATCTGATGAACTATAATTGCTACCAACTCCTTATCATTTAAAATCAAACTTTCTGATAGAAGATTTTTGTGTTACTTTGTTACACATCCTGAGCAGAAACAATTAACTTGTACCATACTTCTCACATGATTTGATGTGGGATAGGTCCAATCAAGAGTGTTATTTGGAGATATGACTTTATAGGTGAGCTGGAATTTAATGATAATTCTGAAAAACATGATTAGATTAAATACATCAAAAAGCAATTAATAACTTGTGTTGGTGTATATACTTTTGTTGTAATCA
Unaligned ( gi|9 ): TTACATTGCTATAACTCGTTCCTTCACAAACTTAAACTTGTAGAAAATGACAAATGTTCTCTTTGTAAATGTGAAAGAGAAACAATTTCTCATATATTTATGATTGTAATATCACCCTAGCCTTTTGGGGAGATTTTGTGAAATGGAACAGTGCTGTTGAAAAGGATTATAAGATTTCGAAAAGAATTGTATTACTTGGANNNNNNNNNNNNNNNNNNNNNNNNNAATATATCTTTATTA
Unaligned ( gi|10 ): AAGAGAGATATATTATTGCATTGAAAGAAGGTAAATAGATGCAAACGATGAACATACTAAAAATAATAATTATTGTCAACATGTAATATGAAATATTTATATCAAATTTTTAAAAGAAAGGAGATTTATAGCCCAACATAAA
Unaligned ( gi|11 ): AGAGAGATATATTATTGCATTGAAAGAAGGTAAAATAGATGCAAACGATGAACATACTAAAAAATAATAATTATTGTCAACATGTAATATGAATATTTATATCAAATTTTTAAAAGAAAGGAGATATACCCCAACATAAAA
Unaligned ( gi|12 ): TATTATTGCATTGAAAGAAGGTAAAATAGATGCAAACGATGAACATACTAAAAATAATAATTATTGTCAACATGTAATATGAAATATTTATATCAAATTTTAAAAGAAAGGAGATTATAGCCCCAACATAAA
Unaligned ( gi|13 ): AGCTAGGATCAGAATAATATGAACATTCTGAAATATATCTGTTGTCCCATAAAAATGTTAGTGAAATTGTAGATACGAAATATTTATATAAACT
Unaligned ( gi|14 ): GAGATATTATTGGATTGAAAGAAGGTAGGATAGATAAAAATAATGAAGTACGGAATGTGTCGTCAACATGTAATTCGAAATATTTATATCAA
Unaligned ( gi|15 ): AAGGATACAAAAATAATTTATTTTCAATAACGAATACTGATTAATTATATTGCTACCAACTCCTTTCTTC
Unaligned ( gi|16 ): TGAAAATGTATTTGAATGTAAATCTAAAATACTAAGCAAATGGGCAAATAT
Alignments
lowQualScore : 11111111111111111111111111111111111111111111
lowQualScore : 1 1 1 1 222 222222 1 1 222 11 222 1 1 11 222 1 1 11 1 11 11 1 1 1 11 222 222 2222 1 1 11 1 11 1 11 44444444 33333333333333 1 1 22 1 1 5555555 1 1 333333333333 1 222 1 1 22 22222 1 11 1 1 1 2222 222222222 22222 11111 1 1 1 2222 11 22 1 1111 1 1 11 111111 111 1 1 1 66666666666666666666666666666666 1 11 1 11 1 444444444444444444444444444 333333333 11 1 11 1 1 222222 1 1 1 1 22222 111 555555555555555555 1 11 222222 1 22222 1111 1111 1 55555555555555555 2222 11 11 111 3333333333333 11 2222222222 1 3333333333333 1 00000000000000000000000000000000000000000000 22 1 1111 111 11 1 4444444444444444444444444444 1111 11 11 2222 1 11 1 1 1 1 7777777777777777777777777777777777777777777777777777777777777777777777777 22 11 1111 1111 22222 222222 11 11111 11 111111 1111 11111111 555555555555555555555555555555555555555555 2222 2222222 2222222 1 11 11 1 1
lowQualScore : 5 5 5 5 1 111 1 555555 5 5 000 1 88 000 5 5 88 111 5 5 66 5 88 88 5 5 5 88 111 111 3333 5 1 5 77 5 1 88 1 6 7 3 6 88 55555555 7 55555555555555 7 3 3 00 3 2 3333333 3 7 3 111111111111 3 6 333 3 7 3 6 7 55 22222 3 88 7 3 3 2 5555 333333333 44444 66666 3 3 2 7 8888 33 33 3 0 4444 0 0 33 2 555555 777 0 0 0 33333333333333333333333333333333 0 77 0 33 0 444444444444444444444444444 0 333333333 6 1 22 0 33 0 0 888888 9 0 2 0 0 55555 0 000 999999999999999999 0 33 555555 0 55555 3 3 8888 4444 0 00000000000000000 1111 33 0 33 777 1 1111111111111 33 0 1 0000000000 2 0 0 1111111111111 0 1 66666666666666666666666666666666666666666666 2 55 0 4444 111 33 0 7777777777777777777777777777 2 7777 8 11 33 1111 0 44 3 3 3 3 3333333333333333333333333333333333333333333333333333333333333333333333333 1 7 55 33 0 4444 1 22 4444 33333 3 333333 1 0 1 11 55555 8 8 11 111111 8 3 1 8 4444 77777777 2 222222222222222222222222222222222222222222 3 0 0000 6666666 3333333 3 3 0 33 3 33 0 3 5 0
lowQualScore : . . . . . ... . ...... . . ... . .. ... . . .. ... . . .. . .. .. . . . .. ... ... .... . . . .. . . .. . . . . . .. ........ . .............. . . . .. . . ....... . . . ............ . . ... . . . . . .. ..... . .. . . . . .... ......... ..... ..... . . . . .... .. .. . . .... . . .. . ...... ... . . . ................................ . .. . .. . ........................... . ......... . . .. . .. . . ...... . . . . . ..... . ... .................. . .. ...... . ..... . . .... .... . ................. .... .. . .. ... . ............. .. . . .......... . . . ............. . . ............................................ . .. . .... ... .. . ............................ . .... . .. .. .... . .. . . . . ......................................................................... . . .. .. . .... . .. .... ..... . ...... . . . .. ..... . . .. ...... . . . . .... ........ . .......................................... . . .... ....... ....... . . . .. . .. . . . .
lowQualScore : 0 0 0 0 0 000 0 000000 5 5 555 0 55 555 0 5 00 000 5 0 55 0 00 00 0 0 5 55 000 000 5555 5 0 0 55 0 0 00 0 7 3 3 7 33 33333333 3 77777777777777 3 3 3 00 3 0 7777777 3 3 3 777777777777 3 7 333 3 3 3 7 3 33 00000 3 33 3 3 3 0 0000 000000000 00000 77777 3 3 0 3 3333 88 88 2 0 8888 0 0 88 5 222222 555 0 0 0 22222222222222222222222222222222 0 00 0 88 0 222222222222222222222222222 7 333333333 5 0 55 0 88 0 0 888888 0 0 5 0 0 00000 2 222 888888888888888888 0 88 222222 0 00000 2 2 5555 8888 0 22222222222222222 2222 88 2 88 000 2 8888888888888 22 8 0 5555555555 5 0 2 2222222222222 0 0 88888888888888888888888888888888888888888888 0 55 0 5555 000 88 0 5555555555555555555555555555 0 0000 0 00 88 2222 0 00 3 3 3 3 0000000000000000000000000000000000000000000000000000000000000000000000000 0 3 55 88 8 8888 0 22 8888 44444 2 222222 4 8 4 00 88888 0 0 22 888888 0 8 4 0 8888 66666666 5 555555555555555555555555555555555555555555 5 2 8888 0000000 5555555 2 2 0 88 2 88 0 2 0 2
consensus : TAGTGGCCAGTATCCCAACGCGTATTNAGAAAACAGGTTCTNACACTTGGACATAATAATGTGACAACACAAAAGGGCTGTTCTANAAAGGACGTTTTCATACGTGGCGGAGAATTACTCCAGTTTTTCCCTAATATGGACCTTANATACACTACTTCTAAAGTCAAAGACAAAACCGGTATTGGATTAAACTATCTCCTCTATTCTAGGACTTTGATGACAAAGGCTTTTGACTCTTTGGAATGGGNTTTTATTAGGCAAGCCGCTCCTTAANTCATTCCAAATNTTGGTGAGCTCACTTATTAAATGG-TTCCA--TACATTTT-ATCT--TCTTCCAATACTAGTTGTGTAA-TAAA-AATAA--CATGGTCAT-TT-ATCAAGGTT-CTTTAGTC-TTGAGAGGGCGT-TGTA-GAACAGG-GTGATCCTCT-GGCACG--GTTATC----TTTTCATC-ATTACAG---TAGAGCT-ACTGGCAATTTCATTG-AAAGAAAAATGT-CTAA-T-A-TC-AAG--GGCATAA-TATTGG-GGGAAGAGAATAGAGT-TA-GGACAAT-ACTGCG--GAT-ATT-CATTTC-TACCTCC-TAGATGGA-ACTCGAACACTCTCT----AAGAGAATCAATGTGC--GTTA--TTGACAAG-TT-T--AGTAG-TG-TCTCA--GGCCTGAAAC-TT-AATATT---TCAAAA-TCACAAGC-AG-TTT-T-------GGA--------TNG-GTAG--TNAAA-ACT-AGGCTC-AG--C-AGAAA---C-T-CTGTGTC-G---TGATC--CGCGAAT-AACGGC--GGGATGTNAA-GATAA-GTT--CA-AACTTC-TT------GGAATACAAC-TTTACCAAAA-ATCT-CG-----AGGAT-ATCATA-----A------CGTA--ATTAT-CAA--TC----C-AAA-AT-----TTCAGCAATTAAAAG---NTTA-T--TAGG-ATCCT-------GGG-TGG---TAGAA----GAGA--TCTAACA--CCA--ATTAGG----AAA--TT--ACAA-TTATTAANACT-T-AG-CA-TGCC-TAAGCTGA-ATACN-----CTTATTTTCAGC-TNTG--------CC------------GAANATANT----C-----G--ACGAAAT-AA-TAAAATAT--TATTTCAA-T-TCA--TATGGG-GTTATAA---------GGTAAAAAG---------AAATACACTCGTT----GGT-AG--TTATGAGG--AGGGTGGAT----TAAACAT-GATTCACTTGTCTTCTTTC-GTTTCATATATCAAACTA-AAATGGGTTAAAC-GATA-CTTGGCA-AAAATAAAGGAATTTGGCAGCATTGCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTATTTATCAAAAGAAAANCTTCAAGAGTTTGTATTTTTTATTGGTAATGAT-TTTTGG--AGAGATGTTATTA---AAGCGTTGATACAGGTT---AAAAAAAGTC----CTGAACATGTATCAGACTAC-----CTGCGCTTAGATATTA--GAAA---TNTTTGCTG-T-GTG-AAAAAATGGGCACTTT--AT--TCAA-AATGGATTGGC-AAT---GGTGTTAAAAGATC---AGAGGACCT-GCG-A----T--GAAAATA-------GAAAT-A------TAGATGCTTTAATGAA--T-AAGGG-A-----GTGCTTGG--TA---CTAATAAC-TTTTT--AGACTATTTTC--ATGTGAT-ATCAAAAATACCCTCAAAAGTCAA
Reference ( family-828 ) : TAGTGGCCAGTATCCCAACGCGTATTNAGAAAACAGGTTCTNACACTTGGACATAATAATGTGACAACACAAAAGGGCTGTTCTANAAAGGACGTTTTCATACGTGGCGGAGAATTACTCCAGTTTTTCCCTAATATGGACCTTANATACACTACTTCTAAAGTCAAAGACAAAACCGGTATTGGATTAAACTATCTCCTCTATTCTAGGACTTTGATGACAAAGGCTTTTGACTCTTTGGAATGGGNTTTTATTAGGCAAGCCGCTCCTTAANTCATTCCAAATNTTGGTGAGCTCACTTATTAAATGG-TTCCA--TACATTTT-ATCT--TCTTCCAATACTAGTTGTGTAA-TAAA-AATAA--CATGGTCAT-TT-ATCAAGGTT-CTTTAGTC-TTGAGAGGGCGT-TGTA--AACAGG-GTGATCCTCT-GGCACG--GTTATC----TTTTCATC-ATTACAG---TAGAGCT-ACTGGCAATTTCATTG-AAAGAAAAATGT-CTAA-T-A-TC-AAG--GGCATAA-TATTGG-GGGAAGAGAATAGAGT-TA-GGACAAT-ACTGCG--GAT-ATT-CATTTC-TACCTCC-TAGATGGA-ACTCGAACACTCTCT----AAGAGAATCAATGTGC--GTTA--TTGACAAG-TT-T--AGTAG-TG-TCTCA--GGCCTGAAAC-TT-AATATT---TCAAAA-TCACAAGC-AG-TTT-T-------GGA--------TNG-GTAG--TNAAA-ACT-AGGCTC-AG--C-AGAAA---C-T-CTGTGTC-G---TGATC--CGCGAAT-AACGGC--GGGATGTNAA-GATAA-GTT--CA-AACTTC-TT------GGAATACAAC-TTTACCAAAA-ATCT-CG-----AGGAT-ATCATA-----A------CGTA--ATTAT-CAA--TC----C-AAA-AT-----TTCAGCAATTAAAAG---NTTA-T--TAGG-ATCCT-------GGG-TGG---TAGAA----GAGA--TCTAACA--CCA--ATTAGG----AAA--TT--ACAA-TTATTAANACT-T-AG-CA-TGCC-TAAGCTGA-ATACN-----CTTATTTTCAGC-TNTG--------CC------------GAANATANT----C-----G--ACGAAAT-AA-TAAAATAT--TATTTCAA-T-TCA--TATGGG-GTTATAA---------GGTAAAAAG---------AAATACACTCGTT----GGT-AG--TTATGAGG--AGGGTGGAT----TAAACAT-GATTCACTTGTCTTCTTTC-GTTTCATATATCAAACTA-AAATGGGTTAAAC-GATA-CTTGGCA-AAAATAAAGGAATTTGGCAGCATTGCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTATTTATCAAAAGAAAANCTTCAAGAGTTTGTATTTTTTATTGGTAATGAT-TTTTGG--AGAGATGTTATTA---AAGCGTTGATACAGGTT---AAAAAAAGTC----CTGAACATGTATCAGACTAC-----CTGCGCTTAGATATTA--GAAA---TNTTTGCTG-T-GTG-AAAAAATGGGCACTTT--AT--TCAA-AATGGATTGGC-AAT---GGTGTTAAAAGATC---AGAGGACCT-GCG-A----T--GAAAATA-------GAAAT-A------TAGATGCTTTAATGAA--T-AAGGG-A-----GTGCTTGG--TA---CTAATAAC-TTTTT--AGACTATTTTC--ATGTGAT-ATCAAAAATACCCTCAAAAGTCAA
gi|1 : GAGATCACTTATTGA-TGG-TTC-A--TACATTTTCATTTGATATTCCAATACTATTTGTGTAA-TAAAGAATAAAACATGG-CATATT-ATCAAGGTT--TTTAGTC-TTGAGAGGGTGT-------AACAGG-GTGA--CTCT-GACACC--GT-ATC----TTTTCATC-ATTA-AG---TAGAGCT-AC-GACAATTTCATTG-AAA---AAATGTTCTAA-TTA-TCGAAG--GGCA-AA-TATGGG-GGAAAGAGAATAGAGT-T---GACAAT-ATT-CA--GAT-A----ATTTC-T--CTCC-TAGATGGACACTTGAACACTCGCT----AAGAGAATCAATGTGT--GTTAA-TTG-CAAG-TTCT--AGTAG-TG-TCTCA--GGCCTGAAAT-TG-AATATT---TCAAAA-TCACAAGC-AGATTT-TTCGTTGAGGA--------TCGTGTAGCTTCAAA-TCG-AGGTTC-AG--CTAGAAATACC-TACTGTGCCTA---TGTT----GCAAATCAAC-GC--GGGCTATAAAGGATAATGTTTGCACAACTCCGTTTTAATGGAAACACAAC-TTTACCAAAACATAT-CGTTAGCAGAATAATCATA-----AACTATTCAAA--GTCATCCAAGTTCTTATC-AAATAT-----TCCAGCAA-TAAAAGAGATTTA-TCCTAGGAATCCT-------GGGTTAA---TAGAA----AAGACGTCTAATACTCCAACATCTGG----AG-------ACA-------AACACTGT-CG-C----CCATAACCCGA-ATAGA-----C--ATGATCAAC-TGTG--------AT------------AAAAATAATTTTGC-----GTAACAAAA--AA-TAATATGTTCTATTTCAA-T-TCA--TATGGG-GTTATA------------T---AAG---------ACACGCACACAGG----AGT-AGAATTATGAG
gi|1 : tggtagagaTTTTTTTTTTCAAAAGAAAAGTTTCAAGAGTTTGTGTTTTTTTGTGATAATGA--TTTTGG--AGAGATTTAATT----AAGCGTTGATAC-GGTT---AAAAAAAGT-----CTGAA-ATGTATCAGACTA------CTGTGC-TAGATATAA--GAAAATTTTTTTGCTG-T-GTG-AAAAAAT-GGCACTTT--AT--TCAACAATGGACTGACAAAT---GGTGTTAAAAGATT---AGA-GACCT-GGT-A----T---ATGATAT------GAAATAA------TAGATGCTTTAATGAA--TCAAGGG-A-----GTGCTTGG--TAACTCTAATAAC-TTTAT--AGAC-ATTTTC--ATGTGATAATCAAAAATA-CATCACAAATCAAcaaatacacatccctatatattaatcatgttgtggaggaggtgagactcacacacgtggaatatcacgaactttagactcatccgtgttttgtttcgattacacacagaatggaatggtgtaaaaggctgtagtagaagtatggggcaatgatagagattaacggtagtctggcagctatattatgcttaaaatggtcaatttcacccttaagatatatagatttcaattttttttttcaaaagaaaagtttcaagagtttgtgtttttttgtgataatgattttggagagatttaattaagcgttgatacggttaaaaaaagtctgaaatgtatcagactactgtgctagatataagaaaatttttttgctgtgtgaaaaaatggcactttattcaacaatggactgacaaatggtgttaaaagattagagacctggtatatgatatgaaataatagatgctttaatgaatcaagggagtgcttggtaactctaataactttatagacattttcatgtgataatcaaaaatacatcacaaatcaaaagatattattggattgaaagaaaggtagaagaataaaataatgaattaatgatgttcgtgcataatttattgtcaacatgtaattctaaatatttatcaaattttgaaaagaaaaggagtttaatagccccaatttaaaa
gi|17 : tggtagagagagatcacttattgatggttcatacattttcatttgatattccaatactatttgtgtaataaagaataaaacatggcatattatcaaggtttttagtcttgagagggtgtaacagggtgactctgacaccgtatcttttcatcattaagtagagctacgacaatttcattgaaaaaatgttctaattatcgaagggcaaatatgggggaaagagaatagagttgacaatattcagataatttctctcctagatggacacttgaacactcgctaagagaatcaatgtgtgttaattgcaagttctagtagtgtctcaggcctgaaattgaatatttcaaaatcacaagcagatttttcgttgaggatcgtgtagcttcaaatcgaggttcagctagaaatacctactgtgcctatgttgcaaatcaacgcgggctataaaggataatgtttgcacaactccgttttaatggaaacacaactttaccaaaacatatcgttagcagaataatcataaactattcaaagtcatccaagttcttatcaaatattccagcaataaaagagatttatcctaggaatcctgggttaatagaaaagacgtctaatactccaacatctggagacaaacactgtcgcccataacccgaatagacatgatcaactgtgataaaaataattttgcgtaacaaaaaataatatgttctatttcaattcatatggggttatataagacacgcacacaggagtagaattatgagcaaatacacatccctatatattaatcatgttgtggaggaggtgagactcacacacgtggaatatcacgaactttagactcatccgtgttttgtttcgattacacacagaatggaatggtgtaaaaggctgtagtagaagtatggggcaatgatagagattaacggtagtctggcagctatattatgcttaaaatggtcaatttcacccttaagatatatagatttcaaTT----GGT-AG--TTATGAGG--AGGGTGGAT----TAAACAT-CATTCAaagatattattggattgaaagaaaggtagaagaataaaataatgaattaatgatgttcgtgcataatttattgtcaacatgtaattctaaatatttatcaaattttgaaaagaaaaggagtttaatagccccaatttaaaa
gi|2 : TAGTG-TCA-TATCC-AAC-CGTATTAAGAAAACAGGTTCTGA-AT---GACATAATAA-GTGACA-CACAAAAGGG---TTTTAAAAAGGACGTT--CATA---GG-GGAAAAT-ACTC--GTTT---CCTA-TATG-ACCTTAT-TA-ACTA--TCTAAAG--AAAGA-AAAAC-GGT-TTGGATTA--CTA---CTTCTATT---AGACTTTGA----AAAAGTTTTTGACTCTT-GGAATGGGATTTTATTAG-CAAG--GCTC-TTAAATCATTC--AATTTTGGTGA-CTCACTTATTAAATGG-TTCCA--TACATTT--AT----TCTTCCAATACTAGTTGTGTAA-TAAA---TAA----TGGTCAT-TTTATCAAGGTT-CTTTAGTC-TTGAAAGGG-GT-TGTATAGACAGG-GTGATCCTCT-GGCACG----TATC----TTTTCATC-ATTACAG---TAGAGCT-ACTGGCAATTTCATTG-AAAGAAAA-TGT--TAA-T-A-TC-AAG--GGCATAACTATTGGTGGGAAGAGAATA-AGT-TA-GGACAAT-A-TGCA--GAT-ATT-CATTTC-TAC-TCC-TAGATGGA-ACT-GAACACTCTCT----AAGAGAATCAATGTGC--GTTA--TTGACAAG-TT-T--AGTAG-TG-TCTCA--GACCTGAAAC-TT-AATATT---CCAAAG-TCACAAGC-AG-TTT---------GGA--------TTG-GTAG--T-AAA-ACT--GGTTC-AG--C-AGAAA---C-T-CTGGGTC-C---TGATT--TGCAAAT-A-CAAT--GGGAT--CAA-GATAA-GTT--CA-AACTTC-TT------GGAATA-AAT-TTTACCAAAA-ATCT-TG-----AAGAT-ATCATA-----A------CATATAATTAT-TAA--TC----T-AAA-CT-----TTCAGCAATTAAAAG---GTTA-T--TAGG-ATCCT-------GGA-T-----TAGAA----GAGA--TCTAACA--CCA--ATTGGG----AAA--TT--ACAA-TTATTAAAACT-TTAG-CACTGCC-TAAGCTAATATACCGGTATTTTATTTTCAGC-TTTG--------CT------------GAATATACT----C-----G--ATGAAA--AT-TAAAATAT--TATTTAAA-T-TCA--TATGGG-GTTATAA---------GGTGAAAAG---------AAATACACTCATT----GGT-AG--TTATGAGG--AGGGTGGAT----TAAACAT-GATTCACTTGCCCTCTTTT-GTTTCATATATCAAACTA-AAATGGGTTAAAC-GATA-CTTGGCA-AAAATAAAGGAGTTTGGCAGCATTGCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTATTTATCAAAAGAAAAACTTCAAGAGTTTGTATTTTTTATTGATAATGA--TTTTGG--AGAGATGTTATTA---AAGCGTTGATACAGGTT---AAAAAAAGTC----TTGAACATGTATCAGACTACCGTAGCTGTGCTTAGATATTA--GAAA---TTTTTGCTG-T-GTGAAAAAAATGGGCACTTT--AT--TCAA-AACGGACTGTC-AAT---GGTGTTAAAAGATT---AGAGGACCT-GTG-A----TCGGAAAATG-------GAAAT-AT-----TAGATGCTTTAATGAAATT-AAGGG-A-----GTGCTTGG--TA---CTAATAAC-TTTTT--AGACTATTTTC--ATGTGAT-ATCAAAAATACCCTTAAAAGTCAAt
gi|3 : C--GTTA--TTGATAAG-TT-TTGAGTTG-TC-TCTCG--CGCTT---ACGTTGAATCTT---TCAAAAGTCACAGGC-AA-TTT-T-------GGT--------TGG-G--G--CAAAA-ATTCAGGCTC-AGATC-TGAAA---A---CTTTGTT-G---TGAACGACGTGAAT-AATGGTTGGGAATGTTAA--AGAA-TTT--AA-GGCTTC-TT------TGAATATAACATTTAC-AAAA-ATCTGCG-----ATG---AGCATGGTTTCA------CGTA--ATTAC-TAT--TC----CGAAA-ATGTGAATTC--CATTTAATCA---TTTAGT--TTGC-ATCCTGGAAATAGGG-TGGATATAAAACCGCGAGA--CTTAACA--CCA----TAGGTTTAAAA--TTGGACAATTTATCAACAC--T-AGCCC-TTCC-CAAGCTCC-TTCCA-----CTTATTTTCCGCATGTGGGCGTGATCCACCA--------AAAAACAAT----TGGATAG--ATGATATCAA-CAGAACAT--T-TTTCAA-TATTATTTATGGGTGATACAA---------AGTAGAAAGGTTGAAAATAAATACAATTGTTTTCAGGTAAA--TTATGAGGCAAGGGGGGATGGGCTTAATATCGGTTCAGTTGTCTCCTTTCAATTTCTTACATCAAGTTAGAAATGGGTCAAACAGGTA-CCTGTCAGAAAATGAGGGAATTGGGCA
gi|3 : GTAATGTTGTTCTGGTAAGAGATGTT-TTATAGAAGTGGTAGCAAAAGCTTATAACAAAAGTTACTTTTGAATGTGTCTAGGAATAC-----TTACAATTAGACATAAAGGAAA----CTTTGTTGATAGT--AAAAAATGGGAATTTTTAGT--ACAA-AATGG-TGGGA-AATAAAGGTATCAAAAaaactcttgtgtatgcatccaagtacttgtaaacctttaaattgtgtgattctatgttttatttgggcaaagaacaaatatgtgattattgcatggcaagttgtaatgttgttctggtaagagatgttttatagaagtggtagcaaaagcttataacaaaagttacttttgaatgtgtctaggaatacttacaattagacataaaggaaactttgttgatagtaaaaaatgggaatttttagtacaaaatggtgggaaataaaggtatcaaaacctttagacattggacttttttaaagtaaaacaagaaatggaactttttaaatgttttaa
gi|4 : cgttattgataagttttgagttgtctctcgcgcttacgttgaatctttcaaaagtcacaggcaattttggttggggcaaaaattcaggctcagatctgaaaactttgttgtgaacgacgtgaataatggttgggaatgttaaagaatttaaggcttctttgaatataacatttacaaaaatctgcgatgagcatggtttcacgtaattactattccgaaaatgtgaattccatttaatcatttagtttgcatcctggaaatagggtggatataaaaccgcgagacttaacaccataggtttaaaattggacaatttatcaacactagcccttcccaagctccttccacttattttccgcatgtgggcgtgatccaccaaaaaacaattggatagatgatatcaacagaacatttttcaatattatttatgggtgatacaaagtagaaaggttgaaaataaatacaattgttttcaggtaaattatgaggcaaggggggatgggcttaatatcggttcagttgtctcctttcaatttcttacatcaagttagaaatgggtcaaacaggtacctgtcagaaaatgagggaattgggcaaaactcttgtgtatgcatccaagtacttgtaaacctttaaattgtgtgattctatgttttatttgggcaaagaacaaatatgtgattattgcatggcaagttTGTAAA-GATAA-GTT--CA-AAGTTT-TT------GGAATA-AAT-TTTACCAAAA-ACCT-TG-----AGGAT-ATCATA-----A---------A--ATTAT-CAA--TC----C-AAA-AT-----TTCAGCAATTAAAAG---GTTA-T--TAGG-ATCCT-------GGG---G---TGAAA----GAGA--TTTAAAA--TCA--ATTAGG----AAAAATT--ACAA-TTATTAAAACT-T-AG-CA-TGCC-TAAGCTGA--TACC-----TTTATTTTCAGC-TTTG--------CCTGACCTTCCAAAGAATATGTT----G-----G--ATGAAAT-AAATAAAATAT--TTTTTCAAAT-TCA--TTTGAG-GTTATAAAACAGAAAAGGTAAAAAG---------AAATACACTCATT----GGT-AG--TTATGAGG--AGGGTGGAT----TAAACAT-GATTCACTTGTCTTCTTTT-GTTTCATATATCACACTA-ACATGGGTTAAAC-GATACCTTAGCA-AAAATAAAGGGATCTGGAAGCATTcctttagacattggacttttttaaagtaaaacaagaaatggaactttttaaatgttttaa
gi|4 : gTTTTATTTATCAAAAGAAAATCTTCAATAGTTTGTATTTTT-ATTGGAAATGAT-TTTTGG--AGAGATGTTATAA---AAGCATTGATACAAGTT----AAAAAAGAC----CTGATCATGTATCACACTAT-----CTACACTCAGGTATTA--GAAA---TGTTT-CTG-T-GTG-AAAAAGTGGGCACGTT--ATAATCAA-AATGGATCGAC-AA-----------------C---AGAGGACCTGGTGTA----T--GGAAATAATTGCGTGCAAT-AAAGATCTAGAAGTTTTAATGAA--T-AAGGGCAGGGATGTGCTTGGTTTT---CTA--AACTTTTTT--AGACTATTTTCATATGTGAT-ATC-AAAATG-TCTCAAAAGTCAAtggtacaatgcatgttcaaccttaaaaatatagattttattttttatttatcaaaagaaaatcttcaatagtttgtatttttattggaaatgatttttggagagatgttataaaagcattgatacaagttaaaaaagacctgatcatgtatcacactatctacactcaggtattagaaatgtttctgtgtgaaaaagtgggcacgttataatcaaaatggatcgacaacagaggacctggtgtatggaaataattgcgtgcaataaagatctagaagttttaatgaataagggcagggatgtgcttggttttctaaacttttttagactattttcatatgtgatatcaaaatgtctcaaaagtcaaagagatattattacattgacaaga
gi|5 : gtgtaaagataagttcaaagtttttggaataaattttaccaaaaaccttgaggatatcataaaattatcaatccaaaatttcagcaattaaaaggttattaggatcctggggtgaaagagatttaaaatcaattaggaaaaattacaattattaaaacttagcatgcctaagctgatacctttattttcagctttgcctgaccttccaaagaatatgttggatgaaataaataaaatattttttcaaattcatttgaggttataaaacagaaaaggtaaaaagaaatacactcattggtagttatgaggagggtggattaaacatgattcacttgtcttcttttgtttcatatatcacactaacatgggttaaacgataccttagcaaaaataaagggatctggaagcatttggtacaatgcatgttcaaccttaaaaatatagattttattTAGTGGCCAGTATCCCAACGCGTATTTAAAAA---GGTTCTCACACTTGGACATAATAATGTGACAACACAAAAGGGCTGTTCTATAAAGGACGTTTTCATACGTGGCAGAGAATTACTCCAGTTTTTCCCTAATATGGACCTTAAATACACTACTTCTAAAGTCAAAGACAAAACCAGTATTGGATTAAACTATCTCCTCTATTCTAGGACTTTGATGACAAAGGCTTTTGACTCTTTGGAATGGATTTTTATTAGGCAAGCCGTTCCTTAACTCATTTCAAATGTTGGTGAGCTCACTTATTAAATGGTTTCCATTTACATTTT-ATCTC-TCTCCCAATACTAG-TGTGTAAGT--A-AAT-A--CATGGTCAT-TT-ATCAAGGTTGCTTTAGTCATTGAGAGGGCGTATGTAGGAACAGGAGTGATCCTCTGGGCACGGCGTTATCCTCTCTTTCATCGATTACAGTACTAGAGCTAACTGGCAATTTCATTGAAAAGAAAAATGA-TTAACT-ACTC-AAGAAGGCATAT-CTTTGG-GGGAAGAGAATAAAGTATAGGGACAATCACTGCGACGATGATTCCATTTCTTACCTCCTTAGATGGA-ACTCGAACAC-CTCTTAACGAGAGATCCAATGTGCTGATTATCTTGACAAGATT-T--AGTAGCTGCTCTCATCGGCCTGAA---CT-AATATCCTATCAAAA-TCACAAGCTAG-TCTAT-------GGAAAACTGGTTAG-GT-G--TTAAACACT-GGCCTCAAG--C-AGAAA---CAT-CT-TGTT-GGACTGATagagatattattacattgacaaga
gi|8 : TGCTATTA---AAGCAATAGCAAACGTT---AAGAAAAGTT----CTGAACATGTATTAGACTAC-----TTGAACTTAGATATTA--GAAA---TGTTTGCTG-T-GTA-AAAAAATGGGAAATTT--CT--TCTA-AATGGGTTGGT-AAT---GGTGTTAAA--ATCTAAAGAGGTCC---CG-ATCTCT--GAAAACA-------GAAAT-A--------------------------AAAGA-A-----GTGCTTGG--CA---ATAATA---TTTTTAAAGATTATTTTC--ATGTAGT-ATCAAATATACCCTAAAAAGTCAA
10 sequences could not be aligned to this reference sequence:
Unaligned ( gi|6 ): TAGGAATTGAGAGCCCCAACACTAAAAACAAAATAAGTGGGGAAACTTTATTAGATGAATCCATATCTGATAAAGACTGGAGATTTTATTTTGTAAATGCATCATAATGTACAAAAGGATACAAAATGAATTTATTTTCAATACCGAATCTGATGAATTATATTACTACCAACTCTTTTCTTCATAAAATTAAAATTTCAGATAATATTTGCGTATTTTTTTGTACTGTGAAGCAGAAACAATAACTCGCATATTTTATGATTGTGTACACATCAACTTATTTTGAATGATTTTTGTGCAGTGGTTTAATGTATAAGATATCAAAAAGAAAATTGTTTTACTCGGTAATAATGAAGAAAAGCTGTTAGAAAATTGTCTTTTATTGGTTGCAGAAAGTGTATTATTTTTTTAAAATCACAATTTAAGGCCTTAGCCCAAAAATTTTCCGAGGCAGTGACTTTATTTAAGTATTTAGAAATAGGAATTACTGTGAAAATGTATTCAAATGTAAATCCAAAATACTTGCAAAGGGCAATATATGATATTGTACAAAACAAGTAAGAATGGAAAACCAGGTATATATAAG
Unaligned ( gi|7 ): AAAAAGTGGGAAACTTATATAGATAACCTTATCTGACAAAGACTGGAAATTTTATTTTTAAATGTTTTCGTTATGTACGAAGGATACAAAAATAATTTATTATTCAAATACGCGAAATATCTGATGAACTATAATTGCTACCAACTCCTTATCATTTAAAATCAAACTTTCTGATAGAAGATTTTTGTGTTACTTTGTTACACATCCTGAGCAGAAACAATTAACTTGTACCATACTTCTCACATGATTTGATGTGGGATAGGTCCAATCAAGAGTGTTATTTGGAGATATGACTTTATAGGTGAGCTGGAATTTAATGATAATTCTGAAAAACATGATTAGATTAAATACATCAAAAAGCAATTAATAACTTGTGTTGGTGTATATACTTTTGTTGTAATCA
Unaligned ( gi|9 ): TTACATTGCTATAACTCGTTCCTTCACAAACTTAAACTTGTAGAAAATGACAAATGTTCTCTTTGTAAATGTGAAAGAGAAACAATTTCTCATATATTTATGATTGTAATATCACCCTAGCCTTTTGGGGAGATTTTGTGAAATGGAACAGTGCTGTTGAAAAGGATTATAAGATTTCGAAAAGAATTGTATTACTTGGANNNNNNNNNNNNNNNNNNNNNNNNNAATATATCTTTATTA
Unaligned ( gi|10 ): AAGAGAGATATATTATTGCATTGAAAGAAGGTAAATAGATGCAAACGATGAACATACTAAAAATAATAATTATTGTCAACATGTAATATGAAATATTTATATCAAATTTTTAAAAGAAAGGAGATTTATAGCCCAACATAAA
Unaligned ( gi|11 ): AGAGAGATATATTATTGCATTGAAAGAAGGTAAAATAGATGCAAACGATGAACATACTAAAAAATAATAATTATTGTCAACATGTAATATGAATATTTATATCAAATTTTTAAAAGAAAGGAGATATACCCCAACATAAAA
Unaligned ( gi|12 ): TATTATTGCATTGAAAGAAGGTAAAATAGATGCAAACGATGAACATACTAAAAATAATAATTATTGTCAACATGTAATATGAAATATTTATATCAAATTTTAAAAGAAAGGAGATTATAGCCCCAACATAAA
Unaligned ( gi|13 ): AGCTAGGATCAGAATAATATGAACATTCTGAAATATATCTGTTGTCCCATAAAAATGTTAGTGAAATTGTAGATACGAAATATTTATATAAACT
Unaligned ( gi|14 ): GAGATATTATTGGATTGAAAGAAGGTAGGATAGATAAAAATAATGAAGTACGGAATGTGTCGTCAACATGTAATTCGAAATATTTATATCAA
Unaligned ( gi|15 ): AAGGATACAAAAATAATTTATTTTCAATAACGAATACTGATTAATTATATTGCTACCAACTCCTTTCTTC
Unaligned ( gi|16 ): TGAAAATGTATTTGAATGTAAATCTAAAATACTAAGCAAATGGGCAAATAT
Alignments
lowQualScore : 11111111111111111111111111111111111111111111
lowQualScore : 1 1 1 1 222 222222 1 1 222 11 222 1 1 11 222 1 1 11 1 11 11 1 1 1 11 222 222 2222 1 1 11 1 11 1 11 44444444 33333333333333 1 1 22 1 1 444444444 1 1 333333333333 1 222 1 1 22 22222 1 11 1 1 1 2222 222222222 22222 11111 1 1 1 2222 11 22 1 1111 1 1 11 111111 111 1 1 1 66666666666666666666666666666666 1 11 1 11 1 444444444444444444444444444 333333333 11 1 11 1 1 222222 1 1 1 1 22222 111 555555555555555555 1 11 222222 1 22222 1111 1111 1 55555555555555555 2222 11 11 111 3333333333333 11 2222222222 1 3333333333333 1 00000000000000000000000000000000000000000000 22 1 1111 111 11 1 4444444444444444444444444444 1111 11 11 2222 1 11 1 1 1 1 7777777777777777777777777777777777777777777777777777777777777777777777777 22 11 1111 1111 22222 222222 11 11111 11 111111 1111 11111111 555555555555555555555555555555555555555555 2222 2222222 2222222 1 11 11 1 1
lowQualScore : 5 5 5 5 1 111 1 555555 5 5 000 1 88 000 5 5 88 111 5 5 66 5 88 88 5 5 5 88 111 111 3333 5 1 5 77 5 1 88 1 6 7 3 6 88 55555555 7 55555555555555 7 3 3 00 3 2 111111111 3 7 3 111111111111 3 6 333 3 7 3 6 7 55 22222 3 88 7 3 3 2 5555 333333333 44444 66666 3 3 2 7 8888 33 33 3 0 4444 0 0 33 2 555555 777 0 0 0 33333333333333333333333333333333 0 77 0 33 0 444444444444444444444444444 0 333333333 6 1 22 0 33 0 0 888888 9 0 2 0 0 55555 0 000 999999999999999999 0 33 555555 0 55555 3 3 8888 4444 0 00000000000000000 1111 33 0 33 777 1 1111111111111 33 0 1 0000000000 2 0 0 1111111111111 0 1 66666666666666666666666666666666666666666666 2 55 0 4444 111 33 0 7777777777777777777777777777 2 7777 8 11 33 1111 0 44 3 3 3 3 3333333333333333333333333333333333333333333333333333333333333333333333333 1 7 55 33 0 4444 1 22 4444 33333 3 333333 1 0 1 11 55555 8 8 11 111111 8 3 1 8 4444 77777777 2 222222222222222222222222222222222222222222 3 0 0000 6666666 3333333 3 3 0 33 3 33 0 3 5 0
lowQualScore : . . . . . ... . ...... . . ... . .. ... . . .. ... . . .. . .. .. . . . .. ... ... .... . . . .. . . .. . . . . . .. ........ . .............. . . . .. . . ......... . . . ............ . . ... . . . . . .. ..... . .. . . . . .... ......... ..... ..... . . . . .... .. .. . . .... . . .. . ...... ... . . . ................................ . .. . .. . ........................... . ......... . . .. . .. . . ...... . . . . . ..... . ... .................. . .. ...... . ..... . . .... .... . ................. .... .. . .. ... . ............. .. . . .......... . . . ............. . . ............................................ . .. . .... ... .. . ............................ . .... . .. .. .... . .. . . . . ......................................................................... . . .. .. . .... . .. .... ..... . ...... . . . .. ..... . . .. ...... . . . . .... ........ . .......................................... . . .... ....... ....... . . . .. . .. . . . .
lowQualScore : 0 0 0 0 0 000 0 000000 5 5 555 0 55 555 0 5 00 000 5 0 55 0 00 00 0 0 5 55 000 000 5555 5 0 0 55 0 0 00 0 7 3 3 7 33 33333333 3 77777777777777 3 3 3 00 3 0 333333333 3 3 3 777777777777 3 7 333 3 3 3 7 3 33 00000 3 33 3 3 3 0 0000 000000000 00000 77777 3 3 0 3 3333 88 88 2 0 8888 0 0 88 5 222222 555 0 0 0 22222222222222222222222222222222 0 00 0 88 0 222222222222222222222222222 7 333333333 5 0 55 0 88 0 0 888888 0 0 5 0 0 00000 2 222 888888888888888888 0 88 222222 0 00000 2 2 5555 8888 0 22222222222222222 2222 88 2 88 000 2 8888888888888 22 8 0 5555555555 5 0 2 2222222222222 0 0 88888888888888888888888888888888888888888888 0 55 0 5555 000 88 0 5555555555555555555555555555 0 0000 0 00 88 2222 0 00 3 3 3 3 0000000000000000000000000000000000000000000000000000000000000000000000000 0 3 55 88 8 8888 0 22 8888 44444 2 222222 4 8 4 00 88888 0 0 22 888888 0 8 4 0 8888 66666666 5 555555555555555555555555555555555555555555 5 2 8888 0000000 5555555 2 2 0 88 2 88 0 2 0 2
consensus : TAGTGGCCAGTATCCCAACGCGTATTNAGAAAACAGGTTCTNACACTTGGACATAATAATGTGACAACACAAAAGGGCTGTTCTANAAAGGACGTTTTCATACGTGGCGGAGAATTACTCCAGTTTTTCCCTAATATGGACCTTANATACACTACTTCTAAAGTCAAAGACAAAACCGGTATTGGATTAAACTATCTCCTCTATTCTAGGACTTTGATGACAAAGGCTTTTGACTCTTTGGAATGGGNTTTTATTAGGCAAGCCGCTCCTTAANTCATTCCAAATNTTGGTGAGCTCACTTATTAAATGG-TTCCA--TACATTTT-ATCT--TCTTCCAATACTAGTTGTGTAA-TAAA-AATAA--CATGGTCAT-TT-ATCAAGGTT-CTTTAGTC-TTGAGAGGGCGT-TGTA--A-ACAGG-GTGATCCTCT-GGCACG--GTTATC----TTTTCATC-ATTACAG---TAGAGCT-ACTGGCAATTTCATTG-AAAGAAAAATGT-CTAA-T-A-TC-AAG--GGCATAA-TATTGG-GGGAAGAGAATAGAGT-TA-GGACAAT-ACTGCG--GAT-ATT-CATTTC-TACCTCC-TAGATGGA-ACTCGAACACTCTCT----AAGAGAATCAATGTGC--GTTA--TTGACAAG-TT-T--AGTAG-TG-TCTCA--GGCCTGAAAC-TT-AATATT---TCAAAA-TCACAAGC-AG-TTT-T-------GGA--------TNG-GTAG--TNAAA-ACT-AGGCTC-AG--C-AGAAA---C-T-CTGTGTC-G---TGATC--CGCGAAT-AACGGC--GGGATGTNAA-GATAA-GTT--CA-AACTTC-TT------GGAATACAAC-TTTACCAAAA-ATCT-CG-----AGGAT-ATCATA-----A------CGTA--ATTAT-CAA--TC----C-AAA-AT-----TTCAGCAATTAAAAG---NTTA-T--TAGG-ATCCT-------GGG-TGG---TAGAA----GAGA--TCTAACA--CCA--ATTAGG----AAA--TT--ACAA-TTATTAANACT-T-AG-CA-TGCC-TAAGCTGA-ATACN-----CTTATTTTCAGC-TNTG--------CC------------GAANATANT----C-----G--ACGAAAT-AA-TAAAATAT--TATTTCAA-T-TCA--TATGGG-GTTATAA---------GGTAAAAAG---------AAATACACTCGTT----GGT-AG--TTATGAGG--AGGGTGGAT----TAAACAT-GATTCACTTGTCTTCTTTC-GTTTCATATATCAAACTA-AAATGGGTTAAAC-GATA-CTTGGCA-AAAATAAAGGAATTTGGCAGCATTGCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTATTTATCAAAAGAAAANCTTCAAGAGTTTGTATTTTTTATTGGTAATGAT-TTTTGG--AGAGATGTTATTA---AAGCGTTGATACAGGTT---AAAAAAAGTC----CTGAACATGTATCAGACTAC-----CTGCGCTTAGATATTA--GAAA---TNTTTGCTG-T-GTG-AAAAAATGGGCACTTT--AT--TCAA-AATGGATTGGC-AAT---GGTGTTAAAAGATC---AGAGGACCT-GCG-A----T--GAAAATA-------GAAAT-A------TAGATGCTTTAATGAA--T-AAGGG-A-----GTGCTTGG--TA---CTAATAAC-TTTTT--AGACTATTTTC--ATGTGAT-ATCAAAAATACCCTCAAAAGTCAA
Reference ( family-828 ) : TAGTGGCCAGTATCCCAACGCGTATTNAGAAAACAGGTTCTNACACTTGGACATAATAATGTGACAACACAAAAGGGCTGTTCTANAAAGGACGTTTTCATACGTGGCGGAGAATTACTCCAGTTTTTCCCTAATATGGACCTTANATACACTACTTCTAAAGTCAAAGACAAAACCGGTATTGGATTAAACTATCTCCTCTATTCTAGGACTTTGATGACAAAGGCTTTTGACTCTTTGGAATGGGNTTTTATTAGGCAAGCCGCTCCTTAANTCATTCCAAATNTTGGTGAGCTCACTTATTAAATGG-TTCCA--TACATTTT-ATCT--TCTTCCAATACTAGTTGTGTAA-TAAA-AATAA--CATGGTCAT-TT-ATCAAGGTT-CTTTAGTC-TTGAGAGGGCGT-TGTA-GA-ACAGG-GTGATCCTCT-GGCACG--GTTATC----TTTTCATC-ATTACAG---TAGAGCT-ACTGGCAATTTCATTG-AAAGAAAAATGT-CTAA-T-A-TC-AAG--GGCATAA-TATTGG-GGGAAGAGAATAGAGT-TA-GGACAAT-ACTGCG--GAT-ATT-CATTTC-TACCTCC-TAGATGGA-ACTCGAACACTCTCT----AAGAGAATCAATGTGC--GTTA--TTGACAAG-TT-T--AGTAG-TG-TCTCA--GGCCTGAAAC-TT-AATATT---TCAAAA-TCACAAGC-AG-TTT-T-------GGA--------TNG-GTAG--TNAAA-ACT-AGGCTC-AG--C-AGAAA---C-T-CTGTGTC-G---TGATC--CGCGAAT-AACGGC--GGGATGTNAA-GATAA-GTT--CA-AACTTC-TT------GGAATACAAC-TTTACCAAAA-ATCT-CG-----AGGAT-ATCATA-----A------CGTA--ATTAT-CAA--TC----C-AAA-AT-----TTCAGCAATTAAAAG---NTTA-T--TAGG-ATCCT-------GGG-TGG---TAGAA----GAGA--TCTAACA--CCA--ATTAGG----AAA--TT--ACAA-TTATTAANACT-T-AG-CA-TGCC-TAAGCTGA-ATACN-----CTTATTTTCAGC-TNTG--------CC------------GAANATANT----C-----G--ACGAAAT-AA-TAAAATAT--TATTTCAA-T-TCA--TATGGG-GTTATAA---------GGTAAAAAG---------AAATACACTCGTT----GGT-AG--TTATGAGG--AGGGTGGAT----TAAACAT-GATTCACTTGTCTTCTTTC-GTTTCATATATCAAACTA-AAATGGGTTAAAC-GATA-CTTGGCA-AAAATAAAGGAATTTGGCAGCATTGCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTATTTATCAAAAGAAAANCTTCAAGAGTTTGTATTTTTTATTGGTAATGAT-TTTTGG--AGAGATGTTATTA---AAGCGTTGATACAGGTT---AAAAAAAGTC----CTGAACATGTATCAGACTAC-----CTGCGCTTAGATATTA--GAAA---TNTTTGCTG-T-GTG-AAAAAATGGGCACTTT--AT--TCAA-AATGGATTGGC-AAT---GGTGTTAAAAGATC---AGAGGACCT-GCG-A----T--GAAAATA-------GAAAT-A------TAGATGCTTTAATGAA--T-AAGGG-A-----GTGCTTGG--TA---CTAATAAC-TTTTT--AGACTATTTTC--ATGTGAT-ATCAAAAATACCCTCAAAAGTCAA
gi|1 : GAGATCACTTATTGA-TGG-TTC-A--TACATTTTCATTTGATATTCCAATACTATTTGTGTAA-TAAAGAATAAAACATGG-CATATT-ATCAAGGTT--TTTAGTC-TTGAGAGGGTGT-------A-ACAGG-GTGA--CTCT-GACACC--GT-ATC----TTTTCATC-ATTA-AG---TAGAGCT-AC-GACAATTTCATTG-AAA---AAATGTTCTAA-TTA-TCGAAG--GGCA-AA-TATGGG-GGAAAGAGAATAGAGT-T---GACAAT-ATT-CA--GAT-A----ATTTC-T--CTCC-TAGATGGACACTTGAACACTCGCT----AAGAGAATCAATGTGT--GTTAA-TTG-CAAG-TTCT--AGTAG-TG-TCTCA--GGCCTGAAAT-TG-AATATT---TCAAAA-TCACAAGC-AGATTT-TTCGTTGAGGA--------TCGTGTAGCTTCAAA-TCG-AGGTTC-AG--CTAGAAATACC-TACTGTGCCTA---TGTT----GCAAATCAAC-GC--GGGCTATAAAGGATAATGTTTGCACAACTCCGTTTTAATGGAAACACAAC-TTTACCAAAACATAT-CGTTAGCAGAATAATCATA-----AACTATTCAAA--GTCATCCAAGTTCTTATC-AAATAT-----TCCAGCAA-TAAAAGAGATTTA-TCCTAGGAATCCT-------GGGTTAA---TAGAA----AAGACGTCTAATACTCCAACATCTGG----AG-------ACA-------AACACTGT-CG-C----CCATAACCCGA-ATAGA-----C--ATGATCAAC-TGTG--------AT------------AAAAATAATTTTGC-----GTAACAAAA--AA-TAATATGTTCTATTTCAA-T-TCA--TATGGG-GTTATA------------T---AAG---------ACACGCACACAGG----AGT-AGAATTATGAG
gi|1 : tggtagagaTTTTTTTTTTCAAAAGAAAAGTTTCAAGAGTTTGTGTTTTTTTGTGATAATGA--TTTTGG--AGAGATTTAATT----AAGCGTTGATAC-GGTT---AAAAAAAGT-----CTGAA-ATGTATCAGACTA------CTGTGC-TAGATATAA--GAAAATTTTTTTGCTG-T-GTG-AAAAAAT-GGCACTTT--AT--TCAACAATGGACTGACAAAT---GGTGTTAAAAGATT---AGA-GACCT-GGT-A----T---ATGATAT------GAAATAA------TAGATGCTTTAATGAA--TCAAGGG-A-----GTGCTTGG--TAACTCTAATAAC-TTTAT--AGAC-ATTTTC--ATGTGATAATCAAAAATA-CATCACAAATCAAcaaatacacatccctatatattaatcatgttgtggaggaggtgagactcacacacgtggaatatcacgaactttagactcatccgtgttttgtttcgattacacacagaatggaatggtgtaaaaggctgtagtagaagtatggggcaatgatagagattaacggtagtctggcagctatattatgcttaaaatggtcaatttcacccttaagatatatagatttcaattttttttttcaaaagaaaagtttcaagagtttgtgtttttttgtgataatgattttggagagatttaattaagcgttgatacggttaaaaaaagtctgaaatgtatcagactactgtgctagatataagaaaatttttttgctgtgtgaaaaaatggcactttattcaacaatggactgacaaatggtgttaaaagattagagacctggtatatgatatgaaataatagatgctttaatgaatcaagggagtgcttggtaactctaataactttatagacattttcatgtgataatcaaaaatacatcacaaatcaaaagatattattggattgaaagaaaggtagaagaataaaataatgaattaatgatgttcgtgcataatttattgtcaacatgtaattctaaatatttatcaaattttgaaaagaaaaggagtttaatagccccaatttaaaa
gi|17 : tggtagagagagatcacttattgatggttcatacattttcatttgatattccaatactatttgtgtaataaagaataaaacatggcatattatcaaggtttttagtcttgagagggtgtaacagggtgactctgacaccgtatcttttcatcattaagtagagctacgacaatttcattgaaaaaatgttctaattatcgaagggcaaatatgggggaaagagaatagagttgacaatattcagataatttctctcctagatggacacttgaacactcgctaagagaatcaatgtgtgttaattgcaagttctagtagtgtctcaggcctgaaattgaatatttcaaaatcacaagcagatttttcgttgaggatcgtgtagcttcaaatcgaggttcagctagaaatacctactgtgcctatgttgcaaatcaacgcgggctataaaggataatgtttgcacaactccgttttaatggaaacacaactttaccaaaacatatcgttagcagaataatcataaactattcaaagtcatccaagttcttatcaaatattccagcaataaaagagatttatcctaggaatcctgggttaatagaaaagacgtctaatactccaacatctggagacaaacactgtcgcccataacccgaatagacatgatcaactgtgataaaaataattttgcgtaacaaaaaataatatgttctatttcaattcatatggggttatataagacacgcacacaggagtagaattatgagcaaatacacatccctatatattaatcatgttgtggaggaggtgagactcacacacgtggaatatcacgaactttagactcatccgtgttttgtttcgattacacacagaatggaatggtgtaaaaggctgtagtagaagtatggggcaatgatagagattaacggtagtctggcagctatattatgcttaaaatggtcaatttcacccttaagatatatagatttcaaTT----GGT-AG--TTATGAGG--AGGGTGGAT----TAAACAT-CATTCAaagatattattggattgaaagaaaggtagaagaataaaataatgaattaatgatgttcgtgcataatttattgtcaacatgtaattctaaatatttatcaaattttgaaaagaaaaggagtttaatagccccaatttaaaa
gi|2 : TAGTG-TCA-TATCC-AAC-CGTATTAAGAAAACAGGTTCTGA-AT---GACATAATAA-GTGACA-CACAAAAGGG---TTTTAAAAAGGACGTT--CATA---GG-GGAAAAT-ACTC--GTTT---CCTA-TATG-ACCTTAT-TA-ACTA--TCTAAAG--AAAGA-AAAAC-GGT-TTGGATTA--CTA---CTTCTATT---AGACTTTGA----AAAAGTTTTTGACTCTT-GGAATGGGATTTTATTAG-CAAG--GCTC-TTAAATCATTC--AATTTTGGTGA-CTCACTTATTAAATGG-TTCCA--TACATTT--AT----TCTTCCAATACTAGTTGTGTAA-TAAA---TAA----TGGTCAT-TTTATCAAGGTT-CTTTAGTC-TTGAAAGGG-GT-TGTA-TAGACAGG-GTGATCCTCT-GGCACG----TATC----TTTTCATC-ATTACAG---TAGAGCT-ACTGGCAATTTCATTG-AAAGAAAA-TGT--TAA-T-A-TC-AAG--GGCATAACTATTGGTGGGAAGAGAATA-AGT-TA-GGACAAT-A-TGCA--GAT-ATT-CATTTC-TAC-TCC-TAGATGGA-ACT-GAACACTCTCT----AAGAGAATCAATGTGC--GTTA--TTGACAAG-TT-T--AGTAG-TG-TCTCA--GACCTGAAAC-TT-AATATT---CCAAAG-TCACAAGC-AG-TTT---------GGA--------TTG-GTAG--T-AAA-ACT--GGTTC-AG--C-AGAAA---C-T-CTGGGTC-C---TGATT--TGCAAAT-A-CAAT--GGGAT--CAA-GATAA-GTT--CA-AACTTC-TT------GGAATA-AAT-TTTACCAAAA-ATCT-TG-----AAGAT-ATCATA-----A------CATATAATTAT-TAA--TC----T-AAA-CT-----TTCAGCAATTAAAAG---GTTA-T--TAGG-ATCCT-------GGA-T-----TAGAA----GAGA--TCTAACA--CCA--ATTGGG----AAA--TT--ACAA-TTATTAAAACT-TTAG-CACTGCC-TAAGCTAATATACCGGTATTTTATTTTCAGC-TTTG--------CT------------GAATATACT----C-----G--ATGAAA--AT-TAAAATAT--TATTTAAA-T-TCA--TATGGG-GTTATAA---------GGTGAAAAG---------AAATACACTCATT----GGT-AG--TTATGAGG--AGGGTGGAT----TAAACAT-GATTCACTTGCCCTCTTTT-GTTTCATATATCAAACTA-AAATGGGTTAAAC-GATA-CTTGGCA-AAAATAAAGGAGTTTGGCAGCATTGCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTATTTATCAAAAGAAAAACTTCAAGAGTTTGTATTTTTTATTGATAATGA--TTTTGG--AGAGATGTTATTA---AAGCGTTGATACAGGTT---AAAAAAAGTC----TTGAACATGTATCAGACTACCGTAGCTGTGCTTAGATATTA--GAAA---TTTTTGCTG-T-GTGAAAAAAATGGGCACTTT--AT--TCAA-AACGGACTGTC-AAT---GGTGTTAAAAGATT---AGAGGACCT-GTG-A----TCGGAAAATG-------GAAAT-AT-----TAGATGCTTTAATGAAATT-AAGGG-A-----GTGCTTGG--TA---CTAATAAC-TTTTT--AGACTATTTTC--ATGTGAT-ATCAAAAATACCCTTAAAAGTCAAt
gi|3 : C--GTTA--TTGATAAG-TT-TTGAGTTG-TC-TCTCG--CGCTT---ACGTTGAATCTT---TCAAAAGTCACAGGC-AA-TTT-T-------GGT--------TGG-G--G--CAAAA-ATTCAGGCTC-AGATC-TGAAA---A---CTTTGTT-G---TGAACGACGTGAAT-AATGGTTGGGAATGTTAA--AGAA-TTT--AA-GGCTTC-TT------TGAATATAACATTTAC-AAAA-ATCTGCG-----ATG---AGCATGGTTTCA------CGTA--ATTAC-TAT--TC----CGAAA-ATGTGAATTC--CATTTAATCA---TTTAGT--TTGC-ATCCTGGAAATAGGG-TGGATATAAAACCGCGAGA--CTTAACA--CCA----TAGGTTTAAAA--TTGGACAATTTATCAACAC--T-AGCCC-TTCC-CAAGCTCC-TTCCA-----CTTATTTTCCGCATGTGGGCGTGATCCACCA--------AAAAACAAT----TGGATAG--ATGATATCAA-CAGAACAT--T-TTTCAA-TATTATTTATGGGTGATACAA---------AGTAGAAAGGTTGAAAATAAATACAATTGTTTTCAGGTAAA--TTATGAGGCAAGGGGGGATGGGCTTAATATCGGTTCAGTTGTCTCCTTTCAATTTCTTACATCAAGTTAGAAATGGGTCAAACAGGTA-CCTGTCAGAAAATGAGGGAATTGGGCA
gi|3 : GTAATGTTGTTCTGGTAAGAGATGTT-TTATAGAAGTGGTAGCAAAAGCTTATAACAAAAGTTACTTTTGAATGTGTCTAGGAATAC-----TTACAATTAGACATAAAGGAAA----CTTTGTTGATAGT--AAAAAATGGGAATTTTTAGT--ACAA-AATGG-TGGGA-AATAAAGGTATCAAAAaaactcttgtgtatgcatccaagtacttgtaaacctttaaattgtgtgattctatgttttatttgggcaaagaacaaatatgtgattattgcatggcaagttgtaatgttgttctggtaagagatgttttatagaagtggtagcaaaagcttataacaaaagttacttttgaatgtgtctaggaatacttacaattagacataaaggaaactttgttgatagtaaaaaatgggaatttttagtacaaaatggtgggaaataaaggtatcaaaacctttagacattggacttttttaaagtaaaacaagaaatggaactttttaaatgttttaa
gi|4 : cgttattgataagttttgagttgtctctcgcgcttacgttgaatctttcaaaagtcacaggcaattttggttggggcaaaaattcaggctcagatctgaaaactttgttgtgaacgacgtgaataatggttgggaatgttaaagaatttaaggcttctttgaatataacatttacaaaaatctgcgatgagcatggtttcacgtaattactattccgaaaatgtgaattccatttaatcatttagtttgcatcctggaaatagggtggatataaaaccgcgagacttaacaccataggtttaaaattggacaatttatcaacactagcccttcccaagctccttccacttattttccgcatgtgggcgtgatccaccaaaaaacaattggatagatgatatcaacagaacatttttcaatattatttatgggtgatacaaagtagaaaggttgaaaataaatacaattgttttcaggtaaattatgaggcaaggggggatgggcttaatatcggttcagttgtctcctttcaatttcttacatcaagttagaaatgggtcaaacaggtacctgtcagaaaatgagggaattgggcaaaactcttgtgtatgcatccaagtacttgtaaacctttaaattgtgtgattctatgttttatttgggcaaagaacaaatatgtgattattgcatggcaagttTGTAAA-GATAA-GTT--CA-AAGTTT-TT------GGAATA-AAT-TTTACCAAAA-ACCT-TG-----AGGAT-ATCATA-----A---------A--ATTAT-CAA--TC----C-AAA-AT-----TTCAGCAATTAAAAG---GTTA-T--TAGG-ATCCT-------GGG---G---TGAAA----GAGA--TTTAAAA--TCA--ATTAGG----AAAAATT--ACAA-TTATTAAAACT-T-AG-CA-TGCC-TAAGCTGA--TACC-----TTTATTTTCAGC-TTTG--------CCTGACCTTCCAAAGAATATGTT----G-----G--ATGAAAT-AAATAAAATAT--TTTTTCAAAT-TCA--TTTGAG-GTTATAAAACAGAAAAGGTAAAAAG---------AAATACACTCATT----GGT-AG--TTATGAGG--AGGGTGGAT----TAAACAT-GATTCACTTGTCTTCTTTT-GTTTCATATATCACACTA-ACATGGGTTAAAC-GATACCTTAGCA-AAAATAAAGGGATCTGGAAGCATTcctttagacattggacttttttaaagtaaaacaagaaatggaactttttaaatgttttaa
gi|4 : gTTTTATTTATCAAAAGAAAATCTTCAATAGTTTGTATTTTT-ATTGGAAATGAT-TTTTGG--AGAGATGTTATAA---AAGCATTGATACAAGTT----AAAAAAGAC----CTGATCATGTATCACACTAT-----CTACACTCAGGTATTA--GAAA---TGTTT-CTG-T-GTG-AAAAAGTGGGCACGTT--ATAATCAA-AATGGATCGAC-AA-----------------C---AGAGGACCTGGTGTA----T--GGAAATAATTGCGTGCAAT-AAAGATCTAGAAGTTTTAATGAA--T-AAGGGCAGGGATGTGCTTGGTTTT---CTA--AACTTTTTT--AGACTATTTTCATATGTGAT-ATC-AAAATG-TCTCAAAAGTCAAtggtacaatgcatgttcaaccttaaaaatatagattttattttttatttatcaaaagaaaatcttcaatagtttgtatttttattggaaatgatttttggagagatgttataaaagcattgatacaagttaaaaaagacctgatcatgtatcacactatctacactcaggtattagaaatgtttctgtgtgaaaaagtgggcacgttataatcaaaatggatcgacaacagaggacctggtgtatggaaataattgcgtgcaataaagatctagaagttttaatgaataagggcagggatgtgcttggttttctaaacttttttagactattttcatatgtgatatcaaaatgtctcaaaagtcaaagagatattattacattgacaaga
gi|5 : gtgtaaagataagttcaaagtttttggaataaattttaccaaaaaccttgaggatatcataaaattatcaatccaaaatttcagcaattaaaaggttattaggatcctggggtgaaagagatttaaaatcaattaggaaaaattacaattattaaaacttagcatgcctaagctgatacctttattttcagctttgcctgaccttccaaagaatatgttggatgaaataaataaaatattttttcaaattcatttgaggttataaaacagaaaaggtaaaaagaaatacactcattggtagttatgaggagggtggattaaacatgattcacttgtcttcttttgtttcatatatcacactaacatgggttaaacgataccttagcaaaaataaagggatctggaagcatttggtacaatgcatgttcaaccttaaaaatatagattttattTAGTGGCCAGTATCCCAACGCGTATTTAAAAA---GGTTCTCACACTTGGACATAATAATGTGACAACACAAAAGGGCTGTTCTATAAAGGACGTTTTCATACGTGGCAGAGAATTACTCCAGTTTTTCCCTAATATGGACCTTAAATACACTACTTCTAAAGTCAAAGACAAAACCAGTATTGGATTAAACTATCTCCTCTATTCTAGGACTTTGATGACAAAGGCTTTTGACTCTTTGGAATGGATTTTTATTAGGCAAGCCGTTCCTTAACTCATTTCAAATGTTGGTGAGCTCACTTATTAAATGGTTTCCATTTACATTTT-ATCTC-TCTCCCAATACTAG-TGTGTAAGT--A-AAT-A--CATGGTCAT-TT-ATCAAGGTTGCTTTAGTCATTGAGAGGGCGTATGTAGGA-ACAGGAGTGATCCTCTGGGCACGGCGTTATCCTCTCTTTCATCGATTACAGTACTAGAGCTAACTGGCAATTTCATTGAAAAGAAAAATGA-TTAACT-ACTC-AAGAAGGCATAT-CTTTGG-GGGAAGAGAATAAAGTATAGGGACAATCACTGCGACGATGATTCCATTTCTTACCTCCTTAGATGGA-ACTCGAACAC-CTCTTAACGAGAGATCCAATGTGCTGATTATCTTGACAAGATT-T--AGTAGCTGCTCTCATCGGCCTGAA---CT-AATATCCTATCAAAA-TCACAAGCTAG-TCTAT-------GGAAAACTGGTTAG-GT-G--TTAAACACT-GGCCTCAAG--C-AGAAA---CAT-CT-TGTT-GGACTGATagagatattattacattgacaaga
gi|8 : TGCTATTA---AAGCAATAGCAAACGTT---AAGAAAAGTT----CTGAACATGTATTAGACTAC-----TTGAACTTAGATATTA--GAAA---TGTTTGCTG-T-GTA-AAAAAATGGGAAATTT--CT--TCTA-AATGGGTTGGT-AAT---GGTGTTAAA--ATCTAAAGAGGTCC---CG-ATCTCT--GAAAACA-------GAAAT-A--------------------------AAAGA-A-----GTGCTTGG--CA---ATAATA---TTTTTAAAGATTATTTTC--ATGTAGT-ATCAAATATACCCTAAAAAGTCAA
10 sequences could not be aligned to this reference sequence:
Unaligned ( gi|6 ): TAGGAATTGAGAGCCCCAACACTAAAAACAAAATAAGTGGGGAAACTTTATTAGATGAATCCATATCTGATAAAGACTGGAGATTTTATTTTGTAAATGCATCATAATGTACAAAAGGATACAAAATGAATTTATTTTCAATACCGAATCTGATGAATTATATTACTACCAACTCTTTTCTTCATAAAATTAAAATTTCAGATAATATTTGCGTATTTTTTTGTACTGTGAAGCAGAAACAATAACTCGCATATTTTATGATTGTGTACACATCAACTTATTTTGAATGATTTTTGTGCAGTGGTTTAATGTATAAGATATCAAAAAGAAAATTGTTTTACTCGGTAATAATGAAGAAAAGCTGTTAGAAAATTGTCTTTTATTGGTTGCAGAAAGTGTATTATTTTTTTAAAATCACAATTTAAGGCCTTAGCCCAAAAATTTTCCGAGGCAGTGACTTTATTTAAGTATTTAGAAATAGGAATTACTGTGAAAATGTATTCAAATGTAAATCCAAAATACTTGCAAAGGGCAATATATGATATTGTACAAAACAAGTAAGAATGGAAAACCAGGTATATATAAG
Unaligned ( gi|7 ): AAAAAGTGGGAAACTTATATAGATAACCTTATCTGACAAAGACTGGAAATTTTATTTTTAAATGTTTTCGTTATGTACGAAGGATACAAAAATAATTTATTATTCAAATACGCGAAATATCTGATGAACTATAATTGCTACCAACTCCTTATCATTTAAAATCAAACTTTCTGATAGAAGATTTTTGTGTTACTTTGTTACACATCCTGAGCAGAAACAATTAACTTGTACCATACTTCTCACATGATTTGATGTGGGATAGGTCCAATCAAGAGTGTTATTTGGAGATATGACTTTATAGGTGAGCTGGAATTTAATGATAATTCTGAAAAACATGATTAGATTAAATACATCAAAAAGCAATTAATAACTTGTGTTGGTGTATATACTTTTGTTGTAATCA
Unaligned ( gi|9 ): TTACATTGCTATAACTCGTTCCTTCACAAACTTAAACTTGTAGAAAATGACAAATGTTCTCTTTGTAAATGTGAAAGAGAAACAATTTCTCATATATTTATGATTGTAATATCACCCTAGCCTTTTGGGGAGATTTTGTGAAATGGAACAGTGCTGTTGAAAAGGATTATAAGATTTCGAAAAGAATTGTATTACTTGGANNNNNNNNNNNNNNNNNNNNNNNNNAATATATCTTTATTA
Unaligned ( gi|10 ): AAGAGAGATATATTATTGCATTGAAAGAAGGTAAATAGATGCAAACGATGAACATACTAAAAATAATAATTATTGTCAACATGTAATATGAAATATTTATATCAAATTTTTAAAAGAAAGGAGATTTATAGCCCAACATAAA
Unaligned ( gi|11 ): AGAGAGATATATTATTGCATTGAAAGAAGGTAAAATAGATGCAAACGATGAACATACTAAAAAATAATAATTATTGTCAACATGTAATATGAATATTTATATCAAATTTTTAAAAGAAAGGAGATATACCCCAACATAAAA
Unaligned ( gi|12 ): TATTATTGCATTGAAAGAAGGTAAAATAGATGCAAACGATGAACATACTAAAAATAATAATTATTGTCAACATGTAATATGAAATATTTATATCAAATTTTAAAAGAAAGGAGATTATAGCCCCAACATAAA
Unaligned ( gi|13 ): AGCTAGGATCAGAATAATATGAACATTCTGAAATATATCTGTTGTCCCATAAAAATGTTAGTGAAATTGTAGATACGAAATATTTATATAAACT
Unaligned ( gi|14 ): GAGATATTATTGGATTGAAAGAAGGTAGGATAGATAAAAATAATGAAGTACGGAATGTGTCGTCAACATGTAATTCGAAATATTTATATCAA
Unaligned ( gi|15 ): AAGGATACAAAAATAATTTATTTTCAATAACGAATACTGATTAATTATATTGCTACCAACTCCTTTCTTC
Unaligned ( gi|16 ): TGAAAATGTATTTGAATGTAAATCTAAAATACTAAGCAAATGGGCAAATAT
Alignments
lowQualScore : 11111111111111111111111111111111111111111111
lowQualScore : 1 1 1 1 222 222222 1 1 222 11 222 1 1 11 222 1 1 11 1 11 11 1 1 1 11 222 222 2222 1 1 11 1 11 1 11 44444444 33333333333333 1 1 22 1 1 5555555 1 1 333333333333 1 222 1 1 22 22222 1 11 1 1 1 2222 222222222 22222 11111 1 1 1 2222 11 22 1 1111 1 1 11 111111 111 1 1 1 66666666666666666666666666666666 1 11 1 11 1 444444444444444444444444444 333333333 11 1 11 1 1 222222 1 1 1 1 22222 111 555555555555555555 1 11 222222 1 22222 1111 1111 1 55555555555555555 2222 11 11 111 3333333333333 11 2222222222 1 3333333333333 1 00000000000000000000000000000000000000000000 22 1 1111 111 11 1 4444444444444444444444444444 1111 11 11 2222 1 11 1 1 1 1 7777777777777777777777777777777777777777777777777777777777777777777777777 22 11 1111 1111 22222 222222 11 11111 11 111111 1111 11111111 555555555555555555555555555555555555555555 2222 2222222 2222222 1 11 11 1 1
lowQualScore : 5 5 5 5 1 111 1 555555 5 5 000 1 88 000 5 5 88 111 5 5 66 5 88 88 5 5 5 88 111 111 3333 5 1 5 77 5 1 88 1 6 7 3 6 88 55555555 7 55555555555555 7 3 3 00 3 2 3333333 3 7 3 111111111111 3 6 333 3 7 3 6 7 55 22222 3 88 7 3 3 2 5555 333333333 44444 66666 3 3 2 7 8888 33 33 3 0 4444 0 0 33 2 555555 777 0 0 0 33333333333333333333333333333333 0 77 0 33 0 444444444444444444444444444 0 333333333 6 1 22 0 33 0 0 888888 9 0 2 0 0 55555 0 000 999999999999999999 0 33 555555 0 55555 3 3 8888 4444 0 00000000000000000 1111 33 0 33 777 1 1111111111111 33 0 1 0000000000 2 0 0 1111111111111 0 1 66666666666666666666666666666666666666666666 2 55 0 4444 111 33 0 7777777777777777777777777777 2 7777 8 11 33 1111 0 44 3 3 3 3 3333333333333333333333333333333333333333333333333333333333333333333333333 1 7 55 33 0 4444 1 22 4444 33333 3 333333 1 0 1 11 55555 8 8 11 111111 8 3 1 8 4444 77777777 2 222222222222222222222222222222222222222222 3 0 0000 6666666 3333333 3 3 0 33 3 33 0 3 5 0
lowQualScore : . . . . . ... . ...... . . ... . .. ... . . .. ... . . .. . .. .. . . . .. ... ... .... . . . .. . . .. . . . . . .. ........ . .............. . . . .. . . ....... . . . ............ . . ... . . . . . .. ..... . .. . . . . .... ......... ..... ..... . . . . .... .. .. . . .... . . .. . ...... ... . . . ................................ . .. . .. . ........................... . ......... . . .. . .. . . ...... . . . . . ..... . ... .................. . .. ...... . ..... . . .... .... . ................. .... .. . .. ... . ............. .. . . .......... . . . ............. . . ............................................ . .. . .... ... .. . ............................ . .... . .. .. .... . .. . . . . ......................................................................... . . .. .. . .... . .. .... ..... . ...... . . . .. ..... . . .. ...... . . . . .... ........ . .......................................... . . .... ....... ....... . . . .. . .. . . . .
lowQualScore : 0 0 0 0 0 000 0 000000 5 5 555 0 55 555 0 5 00 000 5 0 55 0 00 00 0 0 5 55 000 000 5555 5 0 0 55 0 0 00 0 7 3 3 7 33 33333333 3 77777777777777 3 3 3 00 3 0 7777777 3 3 3 777777777777 3 7 333 3 3 3 7 3 33 00000 3 33 3 3 3 0 0000 000000000 00000 77777 3 3 0 3 3333 88 88 2 0 8888 0 0 88 5 222222 555 0 0 0 22222222222222222222222222222222 0 00 0 88 0 222222222222222222222222222 7 333333333 5 0 55 0 88 0 0 888888 0 0 5 0 0 00000 2 222 888888888888888888 0 88 222222 0 00000 2 2 5555 8888 0 22222222222222222 2222 88 2 88 000 2 8888888888888 22 8 0 5555555555 5 0 2 2222222222222 0 0 88888888888888888888888888888888888888888888 0 55 0 5555 000 88 0 5555555555555555555555555555 0 0000 0 00 88 2222 0 00 3 3 3 3 0000000000000000000000000000000000000000000000000000000000000000000000000 0 3 55 88 8 8888 0 22 8888 44444 2 222222 4 8 4 00 88888 0 0 22 888888 0 8 4 0 8888 66666666 5 555555555555555555555555555555555555555555 5 2 8888 0000000 5555555 2 2 0 88 2 88 0 2 0 2
consensus : TAGTGGCCAGTATCCCAACGCGTATTNAGAAAACAGGTTCTNACACTTGGACATAATAATGTGACAACACAAAAGGGCTGTTCTANAAAGGACGTTTTCATACGTGGCGGAGAATTACTCCAGTTTTTCCCTAATATGGACCTTANATACACTACTTCTAAAGTCAAAGACAAAACCGGTATTGGATTAAACTATCTCCTCTATTCTAGGACTTTGATGACAAAGGCTTTTGACTCTTTGGAATGGGNTTTTATTAGGCAAGCCGCTCCTTAANTCATTCCAAATNTTGGTGAGCTCACTTATTAAATGG-TTCCA--TACATTTT-ATCT--TCTTCCAATACTAGTTGTGTAA-TAAA-AATAA--CATGGTCAT-TT-ATCAAGGTT-CTTTAGTC-TTGAGAGGGCGT-TGTA-GAACAGG-GTGATCCTCT-GGCACG--GTTATC----TTTTCATC-ATTACAG---TAGAGCT-ACTGGCAATTTCATTG-AAAGAAAAATGT-CTAA-T-A-TC-AAG--GGCATAA-TATTGG-GGGAAGAGAATAGAGT-TA-GGACAAT-ACTGCG--GAT-ATT-CATTTC-TACCTCC-TAGATGGA-ACTCGAACACTCTCT----AAGAGAATCAATGTGC--GTTA--TTGACAAG-TT-T--AGTAG-TG-TCTCA--GGCCTGAAAC-TT-AATATT---TCAAAA-TCACAAGC-AG-TTT-T-------GGA--------TNG-GTAG--TNAAA-ACT-AGGCTC-AG--C-AGAAA---C-T-CTGTGTC-G---TGATC--CGCGAAT-AACGGC--GGGATGTNAA-GATAA-GTT--CA-AACTTC-TT------GGAATACAAC-TTTACCAAAA-ATCT-CG-----AGGAT-ATCATA-----A------CGTA--ATTAT-CAA--TC----C-AAA-AT-----TTCAGCAATTAAAAG---NTTA-T--TAGG-ATCCT-------GGG-TGG---TAGAA----GAGA--TCTAACA--CCA--ATTAGG----AAA--TT--ACAA-TTATTAANACT-T-AG-CA-TGCC-TAAGCTGA-ATACN-----CTTATTTTCAGC-TNTG--------CC------------GAANATANT----C-----G--ACGAAAT-AA-TAAAATAT--TATTTCAA-T-TCA--TATGGG-GTTATAA---------GGTAAAAAG---------AAATACACTCGTT----GGT-AG--TTATGAGG--AGGGTGGAT----TAAACAT-GATTCACTTGTCTTCTTTC-GTTTCATATATCAAACTA-AAATGGGTTAAAC-GATA-CTTGGCA-AAAATAAAGGAATTTGGCAGCATTGCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTATTTATCAAAAGAAAANCTTCAAGAGTTTGTATTTTTTATTGGTAATGAT-TTTTGG--AGAGATGTTATTA---AAGCGTTGATACAGGTT---AAAAAAAGTC----CTGAACATGTATCAGACTAC-----CTGCGCTTAGATATTA--GAAA---TNTTTGCTG-T-GTG-AAAAAATGGGCACTTT--AT--TCAA-AATGGATTGGC-AAT---GGTGTTAAAAGATC---AGAGGACCT-GCG-A----T--GAAAATA-------GAAAT-A------TAGATGCTTTAATGAA--T-AAGGG-A-----GTGCTTGG--TA---CTAATAAC-TTTTT--AGACTATTTTC--ATGTGAT-ATCAAAAATACCCTCAAAAGTCAA
Reference ( family-828 ) : TAGTGGCCAGTATCCCAACGCGTATTNAGAAAACAGGTTCTNACACTTGGACATAATAATGTGACAACACAAAAGGGCTGTTCTANAAAGGACGTTTTCATACGTGGCGGAGAATTACTCCAGTTTTTCCCTAATATGGACCTTANATACACTACTTCTAAAGTCAAAGACAAAACCGGTATTGGATTAAACTATCTCCTCTATTCTAGGACTTTGATGACAAAGGCTTTTGACTCTTTGGAATGGGNTTTTATTAGGCAAGCCGCTCCTTAANTCATTCCAAATNTTGGTGAGCTCACTTATTAAATGG-TTCCA--TACATTTT-ATCT--TCTTCCAATACTAGTTGTGTAA-TAAA-AATAA--CATGGTCAT-TT-ATCAAGGTT-CTTTAGTC-TTGAGAGGGCGT-TGTA--AACAGG-GTGATCCTCT-GGCACG--GTTATC----TTTTCATC-ATTACAG---TAGAGCT-ACTGGCAATTTCATTG-AAAGAAAAATGT-CTAA-T-A-TC-AAG--GGCATAA-TATTGG-GGGAAGAGAATAGAGT-TA-GGACAAT-ACTGCG--GAT-ATT-CATTTC-TACCTCC-TAGATGGA-ACTCGAACACTCTCT----AAGAGAATCAATGTGC--GTTA--TTGACAAG-TT-T--AGTAG-TG-TCTCA--GGCCTGAAAC-TT-AATATT---TCAAAA-TCACAAGC-AG-TTT-T-------GGA--------TNG-GTAG--TNAAA-ACT-AGGCTC-AG--C-AGAAA---C-T-CTGTGTC-G---TGATC--CGCGAAT-AACGGC--GGGATGTNAA-GATAA-GTT--CA-AACTTC-TT------GGAATACAAC-TTTACCAAAA-ATCT-CG-----AGGAT-ATCATA-----A------CGTA--ATTAT-CAA--TC----C-AAA-AT-----TTCAGCAATTAAAAG---NTTA-T--TAGG-ATCCT-------GGG-TGG---TAGAA----GAGA--TCTAACA--CCA--ATTAGG----AAA--TT--ACAA-TTATTAANACT-T-AG-CA-TGCC-TAAGCTGA-ATACN-----CTTATTTTCAGC-TNTG--------CC------------GAANATANT----C-----G--ACGAAAT-AA-TAAAATAT--TATTTCAA-T-TCA--TATGGG-GTTATAA---------GGTAAAAAG---------AAATACACTCGTT----GGT-AG--TTATGAGG--AGGGTGGAT----TAAACAT-GATTCACTTGTCTTCTTTC-GTTTCATATATCAAACTA-AAATGGGTTAAAC-GATA-CTTGGCA-AAAATAAAGGAATTTGGCAGCATTGCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTATTTATCAAAAGAAAANCTTCAAGAGTTTGTATTTTTTATTGGTAATGAT-TTTTGG--AGAGATGTTATTA---AAGCGTTGATACAGGTT---AAAAAAAGTC----CTGAACATGTATCAGACTAC-----CTGCGCTTAGATATTA--GAAA---TNTTTGCTG-T-GTG-AAAAAATGGGCACTTT--AT--TCAA-AATGGATTGGC-AAT---GGTGTTAAAAGATC---AGAGGACCT-GCG-A----T--GAAAATA-------GAAAT-A------TAGATGCTTTAATGAA--T-AAGGG-A-----GTGCTTGG--TA---CTAATAAC-TTTTT--AGACTATTTTC--ATGTGAT-ATCAAAAATACCCTCAAAAGTCAA
gi|1 : GAGATCACTTATTGA-TGG-TTC-A--TACATTTTCATTTGATATTCCAATACTATTTGTGTAA-TAAAGAATAAAACATGG-CATATT-ATCAAGGTT--TTTAGTC-TTGAGAGGGTGT-------AACAGG-GTGA--CTCT-GACACC--GT-ATC----TTTTCATC-ATTA-AG---TAGAGCT-AC-GACAATTTCATTG-AAA---AAATGTTCTAA-TTA-TCGAAG--GGCA-AA-TATGGG-GGAAAGAGAATAGAGT-T---GACAAT-ATT-CA--GAT-A----ATTTC-T--CTCC-TAGATGGACACTTGAACACTCGCT----AAGAGAATCAATGTGT--GTTAA-TTG-CAAG-TTCT--AGTAG-TG-TCTCA--GGCCTGAAAT-TG-AATATT---TCAAAA-TCACAAGC-AGATTT-TTCGTTGAGGA--------TCGTGTAGCTTCAAA-TCG-AGGTTC-AG--CTAGAAATACC-TACTGTGCCTA---TGTT----GCAAATCAAC-GC--GGGCTATAAAGGATAATGTTTGCACAACTCCGTTTTAATGGAAACACAAC-TTTACCAAAACATAT-CGTTAGCAGAATAATCATA-----AACTATTCAAA--GTCATCCAAGTTCTTATC-AAATAT-----TCCAGCAA-TAAAAGAGATTTA-TCCTAGGAATCCT-------GGGTTAA---TAGAA----AAGACGTCTAATACTCCAACATCTGG----AG-------ACA-------AACACTGT-CG-C----CCATAACCCGA-ATAGA-----C--ATGATCAAC-TGTG--------AT------------AAAAATAATTTTGC-----GTAACAAAA--AA-TAATATGTTCTATTTCAA-T-TCA--TATGGG-GTTATA------------T---AAG---------ACACGCACACAGG----AGT-AGAATTATGAG
gi|1 : tggtagagaTTTTTTTTTTCAAAAGAAAAGTTTCAAGAGTTTGTGTTTTTTTGTGATAATGA--TTTTGG--AGAGATTTAATT----AAGCGTTGATAC-GGTT---AAAAAAAGT-----CTGAA-ATGTATCAGACTA------CTGTGC-TAGATATAA--GAAAATTTTTTTGCTG-T-GTG-AAAAAAT-GGCACTTT--AT--TCAACAATGGACTGACAAAT---GGTGTTAAAAGATT---AGA-GACCT-GGT-A----T---ATGATAT------GAAATAA------TAGATGCTTTAATGAA--TCAAGGG-A-----GTGCTTGG--TAACTCTAATAAC-TTTAT--AGAC-ATTTTC--ATGTGATAATCAAAAATA-CATCACAAATCAAcaaatacacatccctatatattaatcatgttgtggaggaggtgagactcacacacgtggaatatcacgaactttagactcatccgtgttttgtttcgattacacacagaatggaatggtgtaaaaggctgtagtagaagtatggggcaatgatagagattaacggtagtctggcagctatattatgcttaaaatggtcaatttcacccttaagatatatagatttcaattttttttttcaaaagaaaagtttcaagagtttgtgtttttttgtgataatgattttggagagatttaattaagcgttgatacggttaaaaaaagtctgaaatgtatcagactactgtgctagatataagaaaatttttttgctgtgtgaaaaaatggcactttattcaacaatggactgacaaatggtgttaaaagattagagacctggtatatgatatgaaataatagatgctttaatgaatcaagggagtgcttggtaactctaataactttatagacattttcatgtgataatcaaaaatacatcacaaatcaaaagatattattggattgaaagaaaggtagaagaataaaataatgaattaatgatgttcgtgcataatttattgtcaacatgtaattctaaatatttatcaaattttgaaaagaaaaggagtttaatagccccaatttaaaa
gi|17 : tggtagagagagatcacttattgatggttcatacattttcatttgatattccaatactatttgtgtaataaagaataaaacatggcatattatcaaggtttttagtcttgagagggtgtaacagggtgactctgacaccgtatcttttcatcattaagtagagctacgacaatttcattgaaaaaatgttctaattatcgaagggcaaatatgggggaaagagaatagagttgacaatattcagataatttctctcctagatggacacttgaacactcgctaagagaatcaatgtgtgttaattgcaagttctagtagtgtctcaggcctgaaattgaatatttcaaaatcacaagcagatttttcgttgaggatcgtgtagcttcaaatcgaggttcagctagaaatacctactgtgcctatgttgcaaatcaacgcgggctataaaggataatgtttgcacaactccgttttaatggaaacacaactttaccaaaacatatcgttagcagaataatcataaactattcaaagtcatccaagttcttatcaaatattccagcaataaaagagatttatcctaggaatcctgggttaatagaaaagacgtctaatactccaacatctggagacaaacactgtcgcccataacccgaatagacatgatcaactgtgataaaaataattttgcgtaacaaaaaataatatgttctatttcaattcatatggggttatataagacacgcacacaggagtagaattatgagcaaatacacatccctatatattaatcatgttgtggaggaggtgagactcacacacgtggaatatcacgaactttagactcatccgtgttttgtttcgattacacacagaatggaatggtgtaaaaggctgtagtagaagtatggggcaatgatagagattaacggtagtctggcagctatattatgcttaaaatggtcaatttcacccttaagatatatagatttcaaTT----GGT-AG--TTATGAGG--AGGGTGGAT----TAAACAT-CATTCAaagatattattggattgaaagaaaggtagaagaataaaataatgaattaatgatgttcgtgcataatttattgtcaacatgtaattctaaatatttatcaaattttgaaaagaaaaggagtttaatagccccaatttaaaa
gi|2 : TAGTG-TCA-TATCC-AAC-CGTATTAAGAAAACAGGTTCTGA-AT---GACATAATAA-GTGACA-CACAAAAGGG---TTTTAAAAAGGACGTT--CATA---GG-GGAAAAT-ACTC--GTTT---CCTA-TATG-ACCTTAT-TA-ACTA--TCTAAAG--AAAGA-AAAAC-GGT-TTGGATTA--CTA---CTTCTATT---AGACTTTGA----AAAAGTTTTTGACTCTT-GGAATGGGATTTTATTAG-CAAG--GCTC-TTAAATCATTC--AATTTTGGTGA-CTCACTTATTAAATGG-TTCCA--TACATTT--AT----TCTTCCAATACTAGTTGTGTAA-TAAA---TAA----TGGTCAT-TTTATCAAGGTT-CTTTAGTC-TTGAAAGGG-GT-TGTATAGACAGG-GTGATCCTCT-GGCACG----TATC----TTTTCATC-ATTACAG---TAGAGCT-ACTGGCAATTTCATTG-AAAGAAAA-TGT--TAA-T-A-TC-AAG--GGCATAACTATTGGTGGGAAGAGAATA-AGT-TA-GGACAAT-A-TGCA--GAT-ATT-CATTTC-TAC-TCC-TAGATGGA-ACT-GAACACTCTCT----AAGAGAATCAATGTGC--GTTA--TTGACAAG-TT-T--AGTAG-TG-TCTCA--GACCTGAAAC-TT-AATATT---CCAAAG-TCACAAGC-AG-TTT---------GGA--------TTG-GTAG--T-AAA-ACT--GGTTC-AG--C-AGAAA---C-T-CTGGGTC-C---TGATT--TGCAAAT-A-CAAT--GGGAT--CAA-GATAA-GTT--CA-AACTTC-TT------GGAATA-AAT-TTTACCAAAA-ATCT-TG-----AAGAT-ATCATA-----A------CATATAATTAT-TAA--TC----T-AAA-CT-----TTCAGCAATTAAAAG---GTTA-T--TAGG-ATCCT-------GGA-T-----TAGAA----GAGA--TCTAACA--CCA--ATTGGG----AAA--TT--ACAA-TTATTAAAACT-TTAG-CACTGCC-TAAGCTAATATACCGGTATTTTATTTTCAGC-TTTG--------CT------------GAATATACT----C-----G--ATGAAA--AT-TAAAATAT--TATTTAAA-T-TCA--TATGGG-GTTATAA---------GGTGAAAAG---------AAATACACTCATT----GGT-AG--TTATGAGG--AGGGTGGAT----TAAACAT-GATTCACTTGCCCTCTTTT-GTTTCATATATCAAACTA-AAATGGGTTAAAC-GATA-CTTGGCA-AAAATAAAGGAGTTTGGCAGCATTGCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTATTTATCAAAAGAAAAACTTCAAGAGTTTGTATTTTTTATTGATAATGA--TTTTGG--AGAGATGTTATTA---AAGCGTTGATACAGGTT---AAAAAAAGTC----TTGAACATGTATCAGACTACCGTAGCTGTGCTTAGATATTA--GAAA---TTTTTGCTG-T-GTGAAAAAAATGGGCACTTT--AT--TCAA-AACGGACTGTC-AAT---GGTGTTAAAAGATT---AGAGGACCT-GTG-A----TCGGAAAATG-------GAAAT-AT-----TAGATGCTTTAATGAAATT-AAGGG-A-----GTGCTTGG--TA---CTAATAAC-TTTTT--AGACTATTTTC--ATGTGAT-ATCAAAAATACCCTTAAAAGTCAAt
gi|3 : C--GTTA--TTGATAAG-TT-TTGAGTTG-TC-TCTCG--CGCTT---ACGTTGAATCTT---TCAAAAGTCACAGGC-AA-TTT-T-------GGT--------TGG-G--G--CAAAA-ATTCAGGCTC-AGATC-TGAAA---A---CTTTGTT-G---TGAACGACGTGAAT-AATGGTTGGGAATGTTAA--AGAA-TTT--AA-GGCTTC-TT------TGAATATAACATTTAC-AAAA-ATCTGCG-----ATG---AGCATGGTTTCA------CGTA--ATTAC-TAT--TC----CGAAA-ATGTGAATTC--CATTTAATCA---TTTAGT--TTGC-ATCCTGGAAATAGGG-TGGATATAAAACCGCGAGA--CTTAACA--CCA----TAGGTTTAAAA--TTGGACAATTTATCAACAC--T-AGCCC-TTCC-CAAGCTCC-TTCCA-----CTTATTTTCCGCATGTGGGCGTGATCCACCA--------AAAAACAAT----TGGATAG--ATGATATCAA-CAGAACAT--T-TTTCAA-TATTATTTATGGGTGATACAA---------AGTAGAAAGGTTGAAAATAAATACAATTGTTTTCAGGTAAA--TTATGAGGCAAGGGGGGATGGGCTTAATATCGGTTCAGTTGTCTCCTTTCAATTTCTTACATCAAGTTAGAAATGGGTCAAACAGGTA-CCTGTCAGAAAATGAGGGAATTGGGCA
gi|3 : GTAATGTTGTTCTGGTAAGAGATGTT-TTATAGAAGTGGTAGCAAAAGCTTATAACAAAAGTTACTTTTGAATGTGTCTAGGAATAC-----TTACAATTAGACATAAAGGAAA----CTTTGTTGATAGT--AAAAAATGGGAATTTTTAGT--ACAA-AATGG-TGGGA-AATAAAGGTATCAAAAaaactcttgtgtatgcatccaagtacttgtaaacctttaaattgtgtgattctatgttttatttgggcaaagaacaaatatgtgattattgcatggcaagttgtaatgttgttctggtaagagatgttttatagaagtggtagcaaaagcttataacaaaagttacttttgaatgtgtctaggaatacttacaattagacataaaggaaactttgttgatagtaaaaaatgggaatttttagtacaaaatggtgggaaataaaggtatcaaaacctttagacattggacttttttaaagtaaaacaagaaatggaactttttaaatgttttaa
gi|4 : cgttattgataagttttgagttgtctctcgcgcttacgttgaatctttcaaaagtcacaggcaattttggttggggcaaaaattcaggctcagatctgaaaactttgttgtgaacgacgtgaataatggttgggaatgttaaagaatttaaggcttctttgaatataacatttacaaaaatctgcgatgagcatggtttcacgtaattactattccgaaaatgtgaattccatttaatcatttagtttgcatcctggaaatagggtggatataaaaccgcgagacttaacaccataggtttaaaattggacaatttatcaacactagcccttcccaagctccttccacttattttccgcatgtgggcgtgatccaccaaaaaacaattggatagatgatatcaacagaacatttttcaatattatttatgggtgatacaaagtagaaaggttgaaaataaatacaattgttttcaggtaaattatgaggcaaggggggatgggcttaatatcggttcagttgtctcctttcaatttcttacatcaagttagaaatgggtcaaacaggtacctgtcagaaaatgagggaattgggcaaaactcttgtgtatgcatccaagtacttgtaaacctttaaattgtgtgattctatgttttatttgggcaaagaacaaatatgtgattattgcatggcaagttTGTAAA-GATAA-GTT--CA-AAGTTT-TT------GGAATA-AAT-TTTACCAAAA-ACCT-TG-----AGGAT-ATCATA-----A---------A--ATTAT-CAA--TC----C-AAA-AT-----TTCAGCAATTAAAAG---GTTA-T--TAGG-ATCCT-------GGG---G---TGAAA----GAGA--TTTAAAA--TCA--ATTAGG----AAAAATT--ACAA-TTATTAAAACT-T-AG-CA-TGCC-TAAGCTGA--TACC-----TTTATTTTCAGC-TTTG--------CCTGACCTTCCAAAGAATATGTT----G-----G--ATGAAAT-AAATAAAATAT--TTTTTCAAAT-TCA--TTTGAG-GTTATAAAACAGAAAAGGTAAAAAG---------AAATACACTCATT----GGT-AG--TTATGAGG--AGGGTGGAT----TAAACAT-GATTCACTTGTCTTCTTTT-GTTTCATATATCACACTA-ACATGGGTTAAAC-GATACCTTAGCA-AAAATAAAGGGATCTGGAAGCATTcctttagacattggacttttttaaagtaaaacaagaaatggaactttttaaatgttttaa
gi|4 : gTTTTATTTATCAAAAGAAAATCTTCAATAGTTTGTATTTTT-ATTGGAAATGAT-TTTTGG--AGAGATGTTATAA---AAGCATTGATACAAGTT----AAAAAAGAC----CTGATCATGTATCACACTAT-----CTACACTCAGGTATTA--GAAA---TGTTT-CTG-T-GTG-AAAAAGTGGGCACGTT--ATAATCAA-AATGGATCGAC-AA-----------------C---AGAGGACCTGGTGTA----T--GGAAATAATTGCGTGCAAT-AAAGATCTAGAAGTTTTAATGAA--T-AAGGGCAGGGATGTGCTTGGTTTT---CTA--AACTTTTTT--AGACTATTTTCATATGTGAT-ATC-AAAATG-TCTCAAAAGTCAAtggtacaatgcatgttcaaccttaaaaatatagattttattttttatttatcaaaagaaaatcttcaatagtttgtatttttattggaaatgatttttggagagatgttataaaagcattgatacaagttaaaaaagacctgatcatgtatcacactatctacactcaggtattagaaatgtttctgtgtgaaaaagtgggcacgttataatcaaaatggatcgacaacagaggacctggtgtatggaaataattgcgtgcaataaagatctagaagttttaatgaataagggcagggatgtgcttggttttctaaacttttttagactattttcatatgtgatatcaaaatgtctcaaaagtcaaagagatattattacattgacaaga
gi|5 : gtgtaaagataagttcaaagtttttggaataaattttaccaaaaaccttgaggatatcataaaattatcaatccaaaatttcagcaattaaaaggttattaggatcctggggtgaaagagatttaaaatcaattaggaaaaattacaattattaaaacttagcatgcctaagctgatacctttattttcagctttgcctgaccttccaaagaatatgttggatgaaataaataaaatattttttcaaattcatttgaggttataaaacagaaaaggtaaaaagaaatacactcattggtagttatgaggagggtggattaaacatgattcacttgtcttcttttgtttcatatatcacactaacatgggttaaacgataccttagcaaaaataaagggatctggaagcatttggtacaatgcatgttcaaccttaaaaatatagattttattTAGTGGCCAGTATCCCAACGCGTATTTAAAAA---GGTTCTCACACTTGGACATAATAATGTGACAACACAAAAGGGCTGTTCTATAAAGGACGTTTTCATACGTGGCAGAGAATTACTCCAGTTTTTCCCTAATATGGACCTTAAATACACTACTTCTAAAGTCAAAGACAAAACCAGTATTGGATTAAACTATCTCCTCTATTCTAGGACTTTGATGACAAAGGCTTTTGACTCTTTGGAATGGATTTTTATTAGGCAAGCCGTTCCTTAACTCATTTCAAATGTTGGTGAGCTCACTTATTAAATGGTTTCCATTTACATTTT-ATCTC-TCTCCCAATACTAG-TGTGTAAGT--A-AAT-A--CATGGTCAT-TT-ATCAAGGTTGCTTTAGTCATTGAGAGGGCGTATGTAGGAACAGGAGTGATCCTCTGGGCACGGCGTTATCCTCTCTTTCATCGATTACAGTACTAGAGCTAACTGGCAATTTCATTGAAAAGAAAAATGA-TTAACT-ACTC-AAGAAGGCATAT-CTTTGG-GGGAAGAGAATAAAGTATAGGGACAATCACTGCGACGATGATTCCATTTCTTACCTCCTTAGATGGA-ACTCGAACAC-CTCTTAACGAGAGATCCAATGTGCTGATTATCTTGACAAGATT-T--AGTAGCTGCTCTCATCGGCCTGAA---CT-AATATCCTATCAAAA-TCACAAGCTAG-TCTAT-------GGAAAACTGGTTAG-GT-G--TTAAACACT-GGCCTCAAG--C-AGAAA---CAT-CT-TGTT-GGACTGATagagatattattacattgacaaga
gi|8 : TGCTATTA---AAGCAATAGCAAACGTT---AAGAAAAGTT----CTGAACATGTATTAGACTAC-----TTGAACTTAGATATTA--GAAA---TGTTTGCTG-T-GTA-AAAAAATGGGAAATTT--CT--TCTA-AATGGGTTGGT-AAT---GGTGTTAAA--ATCTAAAGAGGTCC---CG-ATCTCT--GAAAACA-------GAAAT-A--------------------------AAAGA-A-----GTGCTTGG--CA---ATAATA---TTTTTAAAGATTATTTTC--ATGTAGT-ATCAAATATACCCTAAAAAGTCAA
10 sequences could not be aligned to this reference sequence:
Unaligned ( gi|6 ): TAGGAATTGAGAGCCCCAACACTAAAAACAAAATAAGTGGGGAAACTTTATTAGATGAATCCATATCTGATAAAGACTGGAGATTTTATTTTGTAAATGCATCATAATGTACAAAAGGATACAAAATGAATTTATTTTCAATACCGAATCTGATGAATTATATTACTACCAACTCTTTTCTTCATAAAATTAAAATTTCAGATAATATTTGCGTATTTTTTTGTACTGTGAAGCAGAAACAATAACTCGCATATTTTATGATTGTGTACACATCAACTTATTTTGAATGATTTTTGTGCAGTGGTTTAATGTATAAGATATCAAAAAGAAAATTGTTTTACTCGGTAATAATGAAGAAAAGCTGTTAGAAAATTGTCTTTTATTGGTTGCAGAAAGTGTATTATTTTTTTAAAATCACAATTTAAGGCCTTAGCCCAAAAATTTTCCGAGGCAGTGACTTTATTTAAGTATTTAGAAATAGGAATTACTGTGAAAATGTATTCAAATGTAAATCCAAAATACTTGCAAAGGGCAATATATGATATTGTACAAAACAAGTAAGAATGGAAAACCAGGTATATATAAG
Unaligned ( gi|7 ): AAAAAGTGGGAAACTTATATAGATAACCTTATCTGACAAAGACTGGAAATTTTATTTTTAAATGTTTTCGTTATGTACGAAGGATACAAAAATAATTTATTATTCAAATACGCGAAATATCTGATGAACTATAATTGCTACCAACTCCTTATCATTTAAAATCAAACTTTCTGATAGAAGATTTTTGTGTTACTTTGTTACACATCCTGAGCAGAAACAATTAACTTGTACCATACTTCTCACATGATTTGATGTGGGATAGGTCCAATCAAGAGTGTTATTTGGAGATATGACTTTATAGGTGAGCTGGAATTTAATGATAATTCTGAAAAACATGATTAGATTAAATACATCAAAAAGCAATTAATAACTTGTGTTGGTGTATATACTTTTGTTGTAATCA
Unaligned ( gi|9 ): TTACATTGCTATAACTCGTTCCTTCACAAACTTAAACTTGTAGAAAATGACAAATGTTCTCTTTGTAAATGTGAAAGAGAAACAATTTCTCATATATTTATGATTGTAATATCACCCTAGCCTTTTGGGGAGATTTTGTGAAATGGAACAGTGCTGTTGAAAAGGATTATAAGATTTCGAAAAGAATTGTATTACTTGGANNNNNNNNNNNNNNNNNNNNNNNNNAATATATCTTTATTA
Unaligned ( gi|10 ): AAGAGAGATATATTATTGCATTGAAAGAAGGTAAATAGATGCAAACGATGAACATACTAAAAATAATAATTATTGTCAACATGTAATATGAAATATTTATATCAAATTTTTAAAAGAAAGGAGATTTATAGCCCAACATAAA
Unaligned ( gi|11 ): AGAGAGATATATTATTGCATTGAAAGAAGGTAAAATAGATGCAAACGATGAACATACTAAAAAATAATAATTATTGTCAACATGTAATATGAATATTTATATCAAATTTTTAAAAGAAAGGAGATATACCCCAACATAAAA
Unaligned ( gi|12 ): TATTATTGCATTGAAAGAAGGTAAAATAGATGCAAACGATGAACATACTAAAAATAATAATTATTGTCAACATGTAATATGAAATATTTATATCAAATTTTAAAAGAAAGGAGATTATAGCCCCAACATAAA
Unaligned ( gi|13 ): AGCTAGGATCAGAATAATATGAACATTCTGAAATATATCTGTTGTCCCATAAAAATGTTAGTGAAATTGTAGATACGAAATATTTATATAAACT
Unaligned ( gi|14 ): GAGATATTATTGGATTGAAAGAAGGTAGGATAGATAAAAATAATGAAGTACGGAATGTGTCGTCAACATGTAATTCGAAATATTTATATCAA
Unaligned ( gi|15 ): AAGGATACAAAAATAATTTATTTTCAATAACGAATACTGATTAATTATATTGCTACCAACTCCTTTCTTC
Unaligned ( gi|16 ): TGAAAATGTATTTGAATGTAAATCTAAAATACTAAGCAAATGGGCAAATAT
Alignments
lowQualScore : 11111111111111111111111111111111111111111111
lowQualScore : 1 1 1 1 222 222222 1 1 222 11 222 1 1 11 222 1 1 11 1 11 11 1 1 1 11 222 222 2222 1 1 11 1 11 1 11 44444444 33333333333333 1 1 22 1 1 444444444 1 1 333333333333 1 222 1 1 22 22222 1 11 1 1 1 2222 222222222 22222 11111 1 1 1 2222 11 22 1 1111 1 1 11 111111 111 1 1 1 66666666666666666666666666666666 1 11 1 11 1 444444444444444444444444444 333333333 11 1 11 1 1 222222 1 1 1 1 22222 111 555555555555555555 1 11 222222 1 22222 1111 1111 1 55555555555555555 2222 11 11 111 3333333333333 11 2222222222 1 3333333333333 1 00000000000000000000000000000000000000000000 22 1 1111 111 11 1 4444444444444444444444444444 1111 11 11 2222 1 11 1 1 1 1 7777777777777777777777777777777777777777777777777777777777777777777777777 22 11 1111 1111 22222 222222 11 11111 11 111111 1111 11111111 555555555555555555555555555555555555555555 2222 2222222 2222222 1 11 11 1 1
lowQualScore : 5 5 5 5 1 111 1 555555 5 5 000 1 88 000 5 5 88 111 5 5 66 5 88 88 5 5 5 88 111 111 3333 5 1 5 77 5 1 88 1 6 7 3 6 88 55555555 7 55555555555555 7 3 3 00 3 2 111111111 3 7 3 111111111111 3 6 333 3 7 3 6 7 55 22222 3 88 7 3 3 2 5555 333333333 44444 66666 3 3 2 7 8888 33 33 3 0 4444 0 0 33 2 555555 777 0 0 0 33333333333333333333333333333333 0 77 0 33 0 444444444444444444444444444 0 333333333 6 1 22 0 33 0 0 888888 9 0 2 0 0 55555 0 000 999999999999999999 0 33 555555 0 55555 3 3 8888 4444 0 00000000000000000 1111 33 0 33 777 1 1111111111111 33 0 1 0000000000 2 0 0 1111111111111 0 1 66666666666666666666666666666666666666666666 2 55 0 4444 111 33 0 7777777777777777777777777777 2 7777 8 11 33 1111 0 44 3 3 3 3 3333333333333333333333333333333333333333333333333333333333333333333333333 1 7 55 33 0 4444 1 22 4444 33333 3 333333 1 0 1 11 55555 8 8 11 111111 8 3 1 8 4444 77777777 2 222222222222222222222222222222222222222222 3 0 0000 6666666 3333333 3 3 0 33 3 33 0 3 5 0
lowQualScore : . . . . . ... . ...... . . ... . .. ... . . .. ... . . .. . .. .. . . . .. ... ... .... . . . .. . . .. . . . . . .. ........ . .............. . . . .. . . ......... . . . ............ . . ... . . . . . .. ..... . .. . . . . .... ......... ..... ..... . . . . .... .. .. . . .... . . .. . ...... ... . . . ................................ . .. . .. . ........................... . ......... . . .. . .. . . ...... . . . . . ..... . ... .................. . .. ...... . ..... . . .... .... . ................. .... .. . .. ... . ............. .. . . .......... . . . ............. . . ............................................ . .. . .... ... .. . ............................ . .... . .. .. .... . .. . . . . ......................................................................... . . .. .. . .... . .. .... ..... . ...... . . . .. ..... . . .. ...... . . . . .... ........ . .......................................... . . .... ....... ....... . . . .. . .. . . . .
lowQualScore : 0 0 0 0 0 000 0 000000 5 5 555 0 55 555 0 5 00 000 5 0 55 0 00 00 0 0 5 55 000 000 5555 5 0 0 55 0 0 00 0 7 3 3 7 33 33333333 3 77777777777777 3 3 3 00 3 0 333333333 3 3 3 777777777777 3 7 333 3 3 3 7 3 33 00000 3 33 3 3 3 0 0000 000000000 00000 77777 3 3 0 3 3333 88 88 2 0 8888 0 0 88 5 222222 555 0 0 0 22222222222222222222222222222222 0 00 0 88 0 222222222222222222222222222 7 333333333 5 0 55 0 88 0 0 888888 0 0 5 0 0 00000 2 222 888888888888888888 0 88 222222 0 00000 2 2 5555 8888 0 22222222222222222 2222 88 2 88 000 2 8888888888888 22 8 0 5555555555 5 0 2 2222222222222 0 0 88888888888888888888888888888888888888888888 0 55 0 5555 000 88 0 5555555555555555555555555555 0 0000 0 00 88 2222 0 00 3 3 3 3 0000000000000000000000000000000000000000000000000000000000000000000000000 0 3 55 88 8 8888 0 22 8888 44444 2 222222 4 8 4 00 88888 0 0 22 888888 0 8 4 0 8888 66666666 5 555555555555555555555555555555555555555555 5 2 8888 0000000 5555555 2 2 0 88 2 88 0 2 0 2
consensus : TAGTGGCCAGTATCCCAACGCGTATTNAGAAAACAGGTTCTNACACTTGGACATAATAATGTGACAACACAAAAGGGCTGTTCTANAAAGGACGTTTTCATACGTGGCGGAGAATTACTCCAGTTTTTCCCTAATATGGACCTTANATACACTACTTCTAAAGTCAAAGACAAAACCGGTATTGGATTAAACTATCTCCTCTATTCTAGGACTTTGATGACAAAGGCTTTTGACTCTTTGGAATGGGNTTTTATTAGGCAAGCCGCTCCTTAANTCATTCCAAATNTTGGTGAGCTCACTTATTAAATGG-TTCCA--TACATTTT-ATCT--TCTTCCAATACTAGTTGTGTAA-TAAA-AATAA--CATGGTCAT-TT-ATCAAGGTT-CTTTAGTC-TTGAGAGGGCGT-TGTA--A-ACAGG-GTGATCCTCT-GGCACG--GTTATC----TTTTCATC-ATTACAG---TAGAGCT-ACTGGCAATTTCATTG-AAAGAAAAATGT-CTAA-T-A-TC-AAG--GGCATAA-TATTGG-GGGAAGAGAATAGAGT-TA-GGACAAT-ACTGCG--GAT-ATT-CATTTC-TACCTCC-TAGATGGA-ACTCGAACACTCTCT----AAGAGAATCAATGTGC--GTTA--TTGACAAG-TT-T--AGTAG-TG-TCTCA--GGCCTGAAAC-TT-AATATT---TCAAAA-TCACAAGC-AG-TTT-T-------GGA--------TNG-GTAG--TNAAA-ACT-AGGCTC-AG--C-AGAAA---C-T-CTGTGTC-G---TGATC--CGCGAAT-AACGGC--GGGATGTNAA-GATAA-GTT--CA-AACTTC-TT------GGAATACAAC-TTTACCAAAA-ATCT-CG-----AGGAT-ATCATA-----A------CGTA--ATTAT-CAA--TC----C-AAA-AT-----TTCAGCAATTAAAAG---NTTA-T--TAGG-ATCCT-------GGG-TGG---TAGAA----GAGA--TCTAACA--CCA--ATTAGG----AAA--TT--ACAA-TTATTAANACT-T-AG-CA-TGCC-TAAGCTGA-ATACN-----CTTATTTTCAGC-TNTG--------CC------------GAANATANT----C-----G--ACGAAAT-AA-TAAAATAT--TATTTCAA-T-TCA--TATGGG-GTTATAA---------GGTAAAAAG---------AAATACACTCGTT----GGT-AG--TTATGAGG--AGGGTGGAT----TAAACAT-GATTCACTTGTCTTCTTTC-GTTTCATATATCAAACTA-AAATGGGTTAAAC-GATA-CTTGGCA-AAAATAAAGGAATTTGGCAGCATTGCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTATTTATCAAAAGAAAANCTTCAAGAGTTTGTATTTTTTATTGGTAATGAT-TTTTGG--AGAGATGTTATTA---AAGCGTTGATACAGGTT---AAAAAAAGTC----CTGAACATGTATCAGACTAC-----CTGCGCTTAGATATTA--GAAA---TNTTTGCTG-T-GTG-AAAAAATGGGCACTTT--AT--TCAA-AATGGATTGGC-AAT---GGTGTTAAAAGATC---AGAGGACCT-GCG-A----T--GAAAATA-------GAAAT-A------TAGATGCTTTAATGAA--T-AAGGG-A-----GTGCTTGG--TA---CTAATAAC-TTTTT--AGACTATTTTC--ATGTGAT-ATCAAAAATACCCTCAAAAGTCAA
Reference ( family-828 ) : TAGTGGCCAGTATCCCAACGCGTATTNAGAAAACAGGTTCTNACACTTGGACATAATAATGTGACAACACAAAAGGGCTGTTCTANAAAGGACGTTTTCATACGTGGCGGAGAATTACTCCAGTTTTTCCCTAATATGGACCTTANATACACTACTTCTAAAGTCAAAGACAAAACCGGTATTGGATTAAACTATCTCCTCTATTCTAGGACTTTGATGACAAAGGCTTTTGACTCTTTGGAATGGGNTTTTATTAGGCAAGCCGCTCCTTAANTCATTCCAAATNTTGGTGAGCTCACTTATTAAATGG-TTCCA--TACATTTT-ATCT--TCTTCCAATACTAGTTGTGTAA-TAAA-AATAA--CATGGTCAT-TT-ATCAAGGTT-CTTTAGTC-TTGAGAGGGCGT-TGTA-GA-ACAGG-GTGATCCTCT-GGCACG--GTTATC----TTTTCATC-ATTACAG---TAGAGCT-ACTGGCAATTTCATTG-AAAGAAAAATGT-CTAA-T-A-TC-AAG--GGCATAA-TATTGG-GGGAAGAGAATAGAGT-TA-GGACAAT-ACTGCG--GAT-ATT-CATTTC-TACCTCC-TAGATGGA-ACTCGAACACTCTCT----AAGAGAATCAATGTGC--GTTA--TTGACAAG-TT-T--AGTAG-TG-TCTCA--GGCCTGAAAC-TT-AATATT---TCAAAA-TCACAAGC-AG-TTT-T-------GGA--------TNG-GTAG--TNAAA-ACT-AGGCTC-AG--C-AGAAA---C-T-CTGTGTC-G---TGATC--CGCGAAT-AACGGC--GGGATGTNAA-GATAA-GTT--CA-AACTTC-TT------GGAATACAAC-TTTACCAAAA-ATCT-CG-----AGGAT-ATCATA-----A------CGTA--ATTAT-CAA--TC----C-AAA-AT-----TTCAGCAATTAAAAG---NTTA-T--TAGG-ATCCT-------GGG-TGG---TAGAA----GAGA--TCTAACA--CCA--ATTAGG----AAA--TT--ACAA-TTATTAANACT-T-AG-CA-TGCC-TAAGCTGA-ATACN-----CTTATTTTCAGC-TNTG--------CC------------GAANATANT----C-----G--ACGAAAT-AA-TAAAATAT--TATTTCAA-T-TCA--TATGGG-GTTATAA---------GGTAAAAAG---------AAATACACTCGTT----GGT-AG--TTATGAGG--AGGGTGGAT----TAAACAT-GATTCACTTGTCTTCTTTC-GTTTCATATATCAAACTA-AAATGGGTTAAAC-GATA-CTTGGCA-AAAATAAAGGAATTTGGCAGCATTGCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTATTTATCAAAAGAAAANCTTCAAGAGTTTGTATTTTTTATTGGTAATGAT-TTTTGG--AGAGATGTTATTA---AAGCGTTGATACAGGTT---AAAAAAAGTC----CTGAACATGTATCAGACTAC-----CTGCGCTTAGATATTA--GAAA---TNTTTGCTG-T-GTG-AAAAAATGGGCACTTT--AT--TCAA-AATGGATTGGC-AAT---GGTGTTAAAAGATC---AGAGGACCT-GCG-A----T--GAAAATA-------GAAAT-A------TAGATGCTTTAATGAA--T-AAGGG-A-----GTGCTTGG--TA---CTAATAAC-TTTTT--AGACTATTTTC--ATGTGAT-ATCAAAAATACCCTCAAAAGTCAA
gi|1 : GAGATCACTTATTGA-TGG-TTC-A--TACATTTTCATTTGATATTCCAATACTATTTGTGTAA-TAAAGAATAAAACATGG-CATATT-ATCAAGGTT--TTTAGTC-TTGAGAGGGTGT-------A-ACAGG-GTGA--CTCT-GACACC--GT-ATC----TTTTCATC-ATTA-AG---TAGAGCT-AC-GACAATTTCATTG-AAA---AAATGTTCTAA-TTA-TCGAAG--GGCA-AA-TATGGG-GGAAAGAGAATAGAGT-T---GACAAT-ATT-CA--GAT-A----ATTTC-T--CTCC-TAGATGGACACTTGAACACTCGCT----AAGAGAATCAATGTGT--GTTAA-TTG-CAAG-TTCT--AGTAG-TG-TCTCA--GGCCTGAAAT-TG-AATATT---TCAAAA-TCACAAGC-AGATTT-TTCGTTGAGGA--------TCGTGTAGCTTCAAA-TCG-AGGTTC-AG--CTAGAAATACC-TACTGTGCCTA---TGTT----GCAAATCAAC-GC--GGGCTATAAAGGATAATGTTTGCACAACTCCGTTTTAATGGAAACACAAC-TTTACCAAAACATAT-CGTTAGCAGAATAATCATA-----AACTATTCAAA--GTCATCCAAGTTCTTATC-AAATAT-----TCCAGCAA-TAAAAGAGATTTA-TCCTAGGAATCCT-------GGGTTAA---TAGAA----AAGACGTCTAATACTCCAACATCTGG----AG-------ACA-------AACACTGT-CG-C----CCATAACCCGA-ATAGA-----C--ATGATCAAC-TGTG--------AT------------AAAAATAATTTTGC-----GTAACAAAA--AA-TAATATGTTCTATTTCAA-T-TCA--TATGGG-GTTATA------------T---AAG---------ACACGCACACAGG----AGT-AGAATTATGAG
gi|1 : tggtagagaTTTTTTTTTTCAAAAGAAAAGTTTCAAGAGTTTGTGTTTTTTTGTGATAATGA--TTTTGG--AGAGATTTAATT----AAGCGTTGATAC-GGTT---AAAAAAAGT-----CTGAA-ATGTATCAGACTA------CTGTGC-TAGATATAA--GAAAATTTTTTTGCTG-T-GTG-AAAAAAT-GGCACTTT--AT--TCAACAATGGACTGACAAAT---GGTGTTAAAAGATT---AGA-GACCT-GGT-A----T---ATGATAT------GAAATAA------TAGATGCTTTAATGAA--TCAAGGG-A-----GTGCTTGG--TAACTCTAATAAC-TTTAT--AGAC-ATTTTC--ATGTGATAATCAAAAATA-CATCACAAATCAAcaaatacacatccctatatattaatcatgttgtggaggaggtgagactcacacacgtggaatatcacgaactttagactcatccgtgttttgtttcgattacacacagaatggaatggtgtaaaaggctgtagtagaagtatggggcaatgatagagattaacggtagtctggcagctatattatgcttaaaatggtcaatttcacccttaagatatatagatttcaattttttttttcaaaagaaaagtttcaagagtttgtgtttttttgtgataatgattttggagagatttaattaagcgttgatacggttaaaaaaagtctgaaatgtatcagactactgtgctagatataagaaaatttttttgctgtgtgaaaaaatggcactttattcaacaatggactgacaaatggtgttaaaagattagagacctggtatatgatatgaaataatagatgctttaatgaatcaagggagtgcttggtaactctaataactttatagacattttcatgtgataatcaaaaatacatcacaaatcaaaagatattattggattgaaagaaaggtagaagaataaaataatgaattaatgatgttcgtgcataatttattgtcaacatgtaattctaaatatttatcaaattttgaaaagaaaaggagtttaatagccccaatttaaaa
gi|17 : tggtagagagagatcacttattgatggttcatacattttcatttgatattccaatactatttgtgtaataaagaataaaacatggcatattatcaaggtttttagtcttgagagggtgtaacagggtgactctgacaccgtatcttttcatcattaagtagagctacgacaatttcattgaaaaaatgttctaattatcgaagggcaaatatgggggaaagagaatagagttgacaatattcagataatttctctcctagatggacacttgaacactcgctaagagaatcaatgtgtgttaattgcaagttctagtagtgtctcaggcctgaaattgaatatttcaaaatcacaagcagatttttcgttgaggatcgtgtagcttcaaatcgaggttcagctagaaatacctactgtgcctatgttgcaaatcaacgcgggctataaaggataatgtttgcacaactccgttttaatggaaacacaactttaccaaaacatatcgttagcagaataatcataaactattcaaagtcatccaagttcttatcaaatattccagcaataaaagagatttatcctaggaatcctgggttaatagaaaagacgtctaatactccaacatctggagacaaacactgtcgcccataacccgaatagacatgatcaactgtgataaaaataattttgcgtaacaaaaaataatatgttctatttcaattcatatggggttatataagacacgcacacaggagtagaattatgagcaaatacacatccctatatattaatcatgttgtggaggaggtgagactcacacacgtggaatatcacgaactttagactcatccgtgttttgtttcgattacacacagaatggaatggtgtaaaaggctgtagtagaagtatggggcaatgatagagattaacggtagtctggcagctatattatgcttaaaatggtcaatttcacccttaagatatatagatttcaaTT----GGT-AG--TTATGAGG--AGGGTGGAT----TAAACAT-CATTCAaagatattattggattgaaagaaaggtagaagaataaaataatgaattaatgatgttcgtgcataatttattgtcaacatgtaattctaaatatttatcaaattttgaaaagaaaaggagtttaatagccccaatttaaaa
gi|2 : TAGTG-TCA-TATCC-AAC-CGTATTAAGAAAACAGGTTCTGA-AT---GACATAATAA-GTGACA-CACAAAAGGG---TTTTAAAAAGGACGTT--CATA---GG-GGAAAAT-ACTC--GTTT---CCTA-TATG-ACCTTAT-TA-ACTA--TCTAAAG--AAAGA-AAAAC-GGT-TTGGATTA--CTA---CTTCTATT---AGACTTTGA----AAAAGTTTTTGACTCTT-GGAATGGGATTTTATTAG-CAAG--GCTC-TTAAATCATTC--AATTTTGGTGA-CTCACTTATTAAATGG-TTCCA--TACATTT--AT----TCTTCCAATACTAGTTGTGTAA-TAAA---TAA----TGGTCAT-TTTATCAAGGTT-CTTTAGTC-TTGAAAGGG-GT-TGTA-TAGACAGG-GTGATCCTCT-GGCACG----TATC----TTTTCATC-ATTACAG---TAGAGCT-ACTGGCAATTTCATTG-AAAGAAAA-TGT--TAA-T-A-TC-AAG--GGCATAACTATTGGTGGGAAGAGAATA-AGT-TA-GGACAAT-A-TGCA--GAT-ATT-CATTTC-TAC-TCC-TAGATGGA-ACT-GAACACTCTCT----AAGAGAATCAATGTGC--GTTA--TTGACAAG-TT-T--AGTAG-TG-TCTCA--GACCTGAAAC-TT-AATATT---CCAAAG-TCACAAGC-AG-TTT---------GGA--------TTG-GTAG--T-AAA-ACT--GGTTC-AG--C-AGAAA---C-T-CTGGGTC-C---TGATT--TGCAAAT-A-CAAT--GGGAT--CAA-GATAA-GTT--CA-AACTTC-TT------GGAATA-AAT-TTTACCAAAA-ATCT-TG-----AAGAT-ATCATA-----A------CATATAATTAT-TAA--TC----T-AAA-CT-----TTCAGCAATTAAAAG---GTTA-T--TAGG-ATCCT-------GGA-T-----TAGAA----GAGA--TCTAACA--CCA--ATTGGG----AAA--TT--ACAA-TTATTAAAACT-TTAG-CACTGCC-TAAGCTAATATACCGGTATTTTATTTTCAGC-TTTG--------CT------------GAATATACT----C-----G--ATGAAA--AT-TAAAATAT--TATTTAAA-T-TCA--TATGGG-GTTATAA---------GGTGAAAAG---------AAATACACTCATT----GGT-AG--TTATGAGG--AGGGTGGAT----TAAACAT-GATTCACTTGCCCTCTTTT-GTTTCATATATCAAACTA-AAATGGGTTAAAC-GATA-CTTGGCA-AAAATAAAGGAGTTTGGCAGCATTGCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTATTTATCAAAAGAAAAACTTCAAGAGTTTGTATTTTTTATTGATAATGA--TTTTGG--AGAGATGTTATTA---AAGCGTTGATACAGGTT---AAAAAAAGTC----TTGAACATGTATCAGACTACCGTAGCTGTGCTTAGATATTA--GAAA---TTTTTGCTG-T-GTGAAAAAAATGGGCACTTT--AT--TCAA-AACGGACTGTC-AAT---GGTGTTAAAAGATT---AGAGGACCT-GTG-A----TCGGAAAATG-------GAAAT-AT-----TAGATGCTTTAATGAAATT-AAGGG-A-----GTGCTTGG--TA---CTAATAAC-TTTTT--AGACTATTTTC--ATGTGAT-ATCAAAAATACCCTTAAAAGTCAAt
gi|3 : C--GTTA--TTGATAAG-TT-TTGAGTTG-TC-TCTCG--CGCTT---ACGTTGAATCTT---TCAAAAGTCACAGGC-AA-TTT-T-------GGT--------TGG-G--G--CAAAA-ATTCAGGCTC-AGATC-TGAAA---A---CTTTGTT-G---TGAACGACGTGAAT-AATGGTTGGGAATGTTAA--AGAA-TTT--AA-GGCTTC-TT------TGAATATAACATTTAC-AAAA-ATCTGCG-----ATG---AGCATGGTTTCA------CGTA--ATTAC-TAT--TC----CGAAA-ATGTGAATTC--CATTTAATCA---TTTAGT--TTGC-ATCCTGGAAATAGGG-TGGATATAAAACCGCGAGA--CTTAACA--CCA----TAGGTTTAAAA--TTGGACAATTTATCAACAC--T-AGCCC-TTCC-CAAGCTCC-TTCCA-----CTTATTTTCCGCATGTGGGCGTGATCCACCA--------AAAAACAAT----TGGATAG--ATGATATCAA-CAGAACAT--T-TTTCAA-TATTATTTATGGGTGATACAA---------AGTAGAAAGGTTGAAAATAAATACAATTGTTTTCAGGTAAA--TTATGAGGCAAGGGGGGATGGGCTTAATATCGGTTCAGTTGTCTCCTTTCAATTTCTTACATCAAGTTAGAAATGGGTCAAACAGGTA-CCTGTCAGAAAATGAGGGAATTGGGCA
gi|3 : GTAATGTTGTTCTGGTAAGAGATGTT-TTATAGAAGTGGTAGCAAAAGCTTATAACAAAAGTTACTTTTGAATGTGTCTAGGAATAC-----TTACAATTAGACATAAAGGAAA----CTTTGTTGATAGT--AAAAAATGGGAATTTTTAGT--ACAA-AATGG-TGGGA-AATAAAGGTATCAAAAaaactcttgtgtatgcatccaagtacttgtaaacctttaaattgtgtgattctatgttttatttgggcaaagaacaaatatgtgattattgcatggcaagttgtaatgttgttctggtaagagatgttttatagaagtggtagcaaaagcttataacaaaagttacttttgaatgtgtctaggaatacttacaattagacataaaggaaactttgttgatagtaaaaaatgggaatttttagtacaaaatggtgggaaataaaggtatcaaaacctttagacattggacttttttaaagtaaaacaagaaatggaactttttaaatgttttaa
gi|4 : cgttattgataagttttgagttgtctctcgcgcttacgttgaatctttcaaaagtcacaggcaattttggttggggcaaaaattcaggctcagatctgaaaactttgttgtgaacgacgtgaataatggttgggaatgttaaagaatttaaggcttctttgaatataacatttacaaaaatctgcgatgagcatggtttcacgtaattactattccgaaaatgtgaattccatttaatcatttagtttgcatcctggaaatagggtggatataaaaccgcgagacttaacaccataggtttaaaattggacaatttatcaacactagcccttcccaagctccttccacttattttccgcatgtgggcgtgatccaccaaaaaacaattggatagatgatatcaacagaacatttttcaatattatttatgggtgatacaaagtagaaaggttgaaaataaatacaattgttttcaggtaaattatgaggcaaggggggatgggcttaatatcggttcagttgtctcctttcaatttcttacatcaagttagaaatgggtcaaacaggtacctgtcagaaaatgagggaattgggcaaaactcttgtgtatgcatccaagtacttgtaaacctttaaattgtgtgattctatgttttatttgggcaaagaacaaatatgtgattattgcatggcaagttTGTAAA-GATAA-GTT--CA-AAGTTT-TT------GGAATA-AAT-TTTACCAAAA-ACCT-TG-----AGGAT-ATCATA-----A---------A--ATTAT-CAA--TC----C-AAA-AT-----TTCAGCAATTAAAAG---GTTA-T--TAGG-ATCCT-------GGG---G---TGAAA----GAGA--TTTAAAA--TCA--ATTAGG----AAAAATT--ACAA-TTATTAAAACT-T-AG-CA-TGCC-TAAGCTGA--TACC-----TTTATTTTCAGC-TTTG--------CCTGACCTTCCAAAGAATATGTT----G-----G--ATGAAAT-AAATAAAATAT--TTTTTCAAAT-TCA--TTTGAG-GTTATAAAACAGAAAAGGTAAAAAG---------AAATACACTCATT----GGT-AG--TTATGAGG--AGGGTGGAT----TAAACAT-GATTCACTTGTCTTCTTTT-GTTTCATATATCACACTA-ACATGGGTTAAAC-GATACCTTAGCA-AAAATAAAGGGATCTGGAAGCATTcctttagacattggacttttttaaagtaaaacaagaaatggaactttttaaatgttttaa
gi|4 : gTTTTATTTATCAAAAGAAAATCTTCAATAGTTTGTATTTTT-ATTGGAAATGAT-TTTTGG--AGAGATGTTATAA---AAGCATTGATACAAGTT----AAAAAAGAC----CTGATCATGTATCACACTAT-----CTACACTCAGGTATTA--GAAA---TGTTT-CTG-T-GTG-AAAAAGTGGGCACGTT--ATAATCAA-AATGGATCGAC-AA-----------------C---AGAGGACCTGGTGTA----T--GGAAATAATTGCGTGCAAT-AAAGATCTAGAAGTTTTAATGAA--T-AAGGGCAGGGATGTGCTTGGTTTT---CTA--AACTTTTTT--AGACTATTTTCATATGTGAT-ATC-AAAATG-TCTCAAAAGTCAAtggtacaatgcatgttcaaccttaaaaatatagattttattttttatttatcaaaagaaaatcttcaatagtttgtatttttattggaaatgatttttggagagatgttataaaagcattgatacaagttaaaaaagacctgatcatgtatcacactatctacactcaggtattagaaatgtttctgtgtgaaaaagtgggcacgttataatcaaaatggatcgacaacagaggacctggtgtatggaaataattgcgtgcaataaagatctagaagttttaatgaataagggcagggatgtgcttggttttctaaacttttttagactattttcatatgtgatatcaaaatgtctcaaaagtcaaagagatattattacattgacaaga
gi|5 : gtgtaaagataagttcaaagtttttggaataaattttaccaaaaaccttgaggatatcataaaattatcaatccaaaatttcagcaattaaaaggttattaggatcctggggtgaaagagatttaaaatcaattaggaaaaattacaattattaaaacttagcatgcctaagctgatacctttattttcagctttgcctgaccttccaaagaatatgttggatgaaataaataaaatattttttcaaattcatttgaggttataaaacagaaaaggtaaaaagaaatacactcattggtagttatgaggagggtggattaaacatgattcacttgtcttcttttgtttcatatatcacactaacatgggttaaacgataccttagcaaaaataaagggatctggaagcatttggtacaatgcatgttcaaccttaaaaatatagattttattTAGTGGCCAGTATCCCAACGCGTATTTAAAAA---GGTTCTCACACTTGGACATAATAATGTGACAACACAAAAGGGCTGTTCTATAAAGGACGTTTTCATACGTGGCAGAGAATTACTCCAGTTTTTCCCTAATATGGACCTTAAATACACTACTTCTAAAGTCAAAGACAAAACCAGTATTGGATTAAACTATCTCCTCTATTCTAGGACTTTGATGACAAAGGCTTTTGACTCTTTGGAATGGATTTTTATTAGGCAAGCCGTTCCTTAACTCATTTCAAATGTTGGTGAGCTCACTTATTAAATGGTTTCCATTTACATTTT-ATCTC-TCTCCCAATACTAG-TGTGTAAGT--A-AAT-A--CATGGTCAT-TT-ATCAAGGTTGCTTTAGTCATTGAGAGGGCGTATGTAGGA-ACAGGAGTGATCCTCTGGGCACGGCGTTATCCTCTCTTTCATCGATTACAGTACTAGAGCTAACTGGCAATTTCATTGAAAAGAAAAATGA-TTAACT-ACTC-AAGAAGGCATAT-CTTTGG-GGGAAGAGAATAAAGTATAGGGACAATCACTGCGACGATGATTCCATTTCTTACCTCCTTAGATGGA-ACTCGAACAC-CTCTTAACGAGAGATCCAATGTGCTGATTATCTTGACAAGATT-T--AGTAGCTGCTCTCATCGGCCTGAA---CT-AATATCCTATCAAAA-TCACAAGCTAG-TCTAT-------GGAAAACTGGTTAG-GT-G--TTAAACACT-GGCCTCAAG--C-AGAAA---CAT-CT-TGTT-GGACTGATagagatattattacattgacaaga
gi|8 : TGCTATTA---AAGCAATAGCAAACGTT---AAGAAAAGTT----CTGAACATGTATTAGACTAC-----TTGAACTTAGATATTA--GAAA---TGTTTGCTG-T-GTA-AAAAAATGGGAAATTT--CT--TCTA-AATGGGTTGGT-AAT---GGTGTTAAA--ATCTAAAGAGGTCC---CG-ATCTCT--GAAAACA-------GAAAT-A--------------------------AAAGA-A-----GTGCTTGG--CA---ATAATA---TTTTTAAAGATTATTTTC--ATGTAGT-ATCAAATATACCCTAAAAAGTCAA
10 sequences could not be aligned to this reference sequence:
Unaligned ( gi|6 ): TAGGAATTGAGAGCCCCAACACTAAAAACAAAATAAGTGGGGAAACTTTATTAGATGAATCCATATCTGATAAAGACTGGAGATTTTATTTTGTAAATGCATCATAATGTACAAAAGGATACAAAATGAATTTATTTTCAATACCGAATCTGATGAATTATATTACTACCAACTCTTTTCTTCATAAAATTAAAATTTCAGATAATATTTGCGTATTTTTTTGTACTGTGAAGCAGAAACAATAACTCGCATATTTTATGATTGTGTACACATCAACTTATTTTGAATGATTTTTGTGCAGTGGTTTAATGTATAAGATATCAAAAAGAAAATTGTTTTACTCGGTAATAATGAAGAAAAGCTGTTAGAAAATTGTCTTTTATTGGTTGCAGAAAGTGTATTATTTTTTTAAAATCACAATTTAAGGCCTTAGCCCAAAAATTTTCCGAGGCAGTGACTTTATTTAAGTATTTAGAAATAGGAATTACTGTGAAAATGTATTCAAATGTAAATCCAAAATACTTGCAAAGGGCAATATATGATATTGTACAAAACAAGTAAGAATGGAAAACCAGGTATATATAAG
Unaligned ( gi|7 ): AAAAAGTGGGAAACTTATATAGATAACCTTATCTGACAAAGACTGGAAATTTTATTTTTAAATGTTTTCGTTATGTACGAAGGATACAAAAATAATTTATTATTCAAATACGCGAAATATCTGATGAACTATAATTGCTACCAACTCCTTATCATTTAAAATCAAACTTTCTGATAGAAGATTTTTGTGTTACTTTGTTACACATCCTGAGCAGAAACAATTAACTTGTACCATACTTCTCACATGATTTGATGTGGGATAGGTCCAATCAAGAGTGTTATTTGGAGATATGACTTTATAGGTGAGCTGGAATTTAATGATAATTCTGAAAAACATGATTAGATTAAATACATCAAAAAGCAATTAATAACTTGTGTTGGTGTATATACTTTTGTTGTAATCA
Unaligned ( gi|9 ): TTACATTGCTATAACTCGTTCCTTCACAAACTTAAACTTGTAGAAAATGACAAATGTTCTCTTTGTAAATGTGAAAGAGAAACAATTTCTCATATATTTATGATTGTAATATCACCCTAGCCTTTTGGGGAGATTTTGTGAAATGGAACAGTGCTGTTGAAAAGGATTATAAGATTTCGAAAAGAATTGTATTACTTGGANNNNNNNNNNNNNNNNNNNNNNNNNAATATATCTTTATTA
Unaligned ( gi|10 ): AAGAGAGATATATTATTGCATTGAAAGAAGGTAAATAGATGCAAACGATGAACATACTAAAAATAATAATTATTGTCAACATGTAATATGAAATATTTATATCAAATTTTTAAAAGAAAGGAGATTTATAGCCCAACATAAA
Unaligned ( gi|11 ): AGAGAGATATATTATTGCATTGAAAGAAGGTAAAATAGATGCAAACGATGAACATACTAAAAAATAATAATTATTGTCAACATGTAATATGAATATTTATATCAAATTTTTAAAAGAAAGGAGATATACCCCAACATAAAA
Unaligned ( gi|12 ): TATTATTGCATTGAAAGAAGGTAAAATAGATGCAAACGATGAACATACTAAAAATAATAATTATTGTCAACATGTAATATGAAATATTTATATCAAATTTTAAAAGAAAGGAGATTATAGCCCCAACATAAA
Unaligned ( gi|13 ): AGCTAGGATCAGAATAATATGAACATTCTGAAATATATCTGTTGTCCCATAAAAATGTTAGTGAAATTGTAGATACGAAATATTTATATAAACT
Unaligned ( gi|14 ): GAGATATTATTGGATTGAAAGAAGGTAGGATAGATAAAAATAATGAAGTACGGAATGTGTCGTCAACATGTAATTCGAAATATTTATATCAA
Unaligned ( gi|15 ): AAGGATACAAAAATAATTTATTTTCAATAACGAATACTGATTAATTATATTGCTACCAACTCCTTTCTTC
Unaligned ( gi|16 ): TGAAAATGTATTTGAATGTAAATCTAAAATACTAAGCAAATGGGCAAATAT
Alignments
lowQualScore : 11111111111111111111111111111111111111111111
lowQualScore : 1 1 1 1 222 222222 1 1 222 11 222 1 1 11 222 1 1 11 1 11 11 1 1 1 11 222 222 2222 1 1 11 1 11 1 11 44444444 33333333333333 1 1 22 1 1 5555555 1 1 333333333333 1 222 1 1 22 22222 1 11 1 1 1 2222 222222222 22222 11111 1 1 1 2222 11 22 1 1111 1 1 11 111111 111 1 1 1 66666666666666666666666666666666 1 11 1 11 1 444444444444444444444444444 333333333 11 1 11 1 1 222222 1 1 1 1 22222 111 555555555555555555 1 11 222222 1 22222 1111 1111 1 55555555555555555 2222 11 11 111 3333333333333 11 2222222222 1 3333333333333 1 00000000000000000000000000000000000000000000 22 1 1111 111 11 1 4444444444444444444444444444 1111 11 11 2222 1 11 1 1 1 1 7777777777777777777777777777777777777777777777777777777777777777777777777 22 11 1111 1111 22222 222222 11 11111 11 111111 1111 11111111 555555555555555555555555555555555555555555 2222 2222222 2222222 1 11 11 1 1
lowQualScore : 5 5 5 5 1 111 1 555555 5 5 000 1 88 000 5 5 88 111 5 5 66 5 88 88 5 5 5 88 111 111 3333 5 1 5 77 5 1 88 1 6 7 3 6 88 55555555 7 55555555555555 7 3 3 00 3 2 3333333 3 7 3 111111111111 3 6 333 3 7 3 6 7 55 22222 3 88 7 3 3 2 5555 333333333 44444 66666 3 3 2 7 8888 33 33 3 0 4444 0 0 33 2 555555 777 0 0 0 33333333333333333333333333333333 0 77 0 33 0 444444444444444444444444444 0 333333333 6 1 22 0 33 0 0 888888 9 0 2 0 0 55555 0 000 999999999999999999 0 33 555555 0 55555 3 3 8888 4444 0 00000000000000000 1111 33 0 33 777 1 1111111111111 33 0 1 0000000000 2 0 0 1111111111111 0 1 66666666666666666666666666666666666666666666 2 55 0 4444 111 33 0 7777777777777777777777777777 2 7777 8 11 33 1111 0 44 3 3 3 3 3333333333333333333333333333333333333333333333333333333333333333333333333 1 7 55 33 0 4444 1 22 4444 33333 3 333333 1 0 1 11 55555 8 8 11 111111 8 3 1 8 4444 77777777 2 222222222222222222222222222222222222222222 3 0 0000 6666666 3333333 3 3 0 33 3 33 0 3 5 0
lowQualScore : . . . . . ... . ...... . . ... . .. ... . . .. ... . . .. . .. .. . . . .. ... ... .... . . . .. . . .. . . . . . .. ........ . .............. . . . .. . . ....... . . . ............ . . ... . . . . . .. ..... . .. . . . . .... ......... ..... ..... . . . . .... .. .. . . .... . . .. . ...... ... . . . ................................ . .. . .. . ........................... . ......... . . .. . .. . . ...... . . . . . ..... . ... .................. . .. ...... . ..... . . .... .... . ................. .... .. . .. ... . ............. .. . . .......... . . . ............. . . ............................................ . .. . .... ... .. . ............................ . .... . .. .. .... . .. . . . . ......................................................................... . . .. .. . .... . .. .... ..... . ...... . . . .. ..... . . .. ...... . . . . .... ........ . .......................................... . . .... ....... ....... . . . .. . .. . . . .
lowQualScore : 0 0 0 0 0 000 0 000000 5 5 555 0 55 555 0 5 00 000 5 0 55 0 00 00 0 0 5 55 000 000 5555 5 0 0 55 0 0 00 0 7 3 3 7 33 33333333 3 77777777777777 3 3 3 00 3 0 7777777 3 3 3 777777777777 3 7 333 3 3 3 7 3 33 00000 3 33 3 3 3 0 0000 000000000 00000 77777 3 3 0 3 3333 88 88 2 0 8888 0 0 88 5 222222 555 0 0 0 22222222222222222222222222222222 0 00 0 88 0 222222222222222222222222222 7 333333333 5 0 55 0 88 0 0 888888 0 0 5 0 0 00000 2 222 888888888888888888 0 88 222222 0 00000 2 2 5555 8888 0 22222222222222222 2222 88 2 88 000 2 8888888888888 22 8 0 5555555555 5 0 2 2222222222222 0 0 88888888888888888888888888888888888888888888 0 55 0 5555 000 88 0 5555555555555555555555555555 0 0000 0 00 88 2222 0 00 3 3 3 3 0000000000000000000000000000000000000000000000000000000000000000000000000 0 3 55 88 8 8888 0 22 8888 44444 2 222222 4 8 4 00 88888 0 0 22 888888 0 8 4 0 8888 66666666 5 555555555555555555555555555555555555555555 5 2 8888 0000000 5555555 2 2 0 88 2 88 0 2 0 2
consensus : TAGTGGCCAGTATCCCAACGCGTATTNAGAAAACAGGTTCTNACACTTGGACATAATAATGTGACAACACAAAAGGGCTGTTCTANAAAGGACGTTTTCATACGTGGCGGAGAATTACTCCAGTTTTTCCCTAATATGGACCTTANATACACTACTTCTAAAGTCAAAGACAAAACCGGTATTGGATTAAACTATCTCCTCTATTCTAGGACTTTGATGACAAAGGCTTTTGACTCTTTGGAATGGGNTTTTATTAGGCAAGCCGCTCCTTAANTCATTCCAAATNTTGGTGAGCTCACTTATTAAATGG-TTCCA--TACATTTT-ATCT--TCTTCCAATACTAGTTGTGTAA-TAAA-AATAA--CATGGTCAT-TT-ATCAAGGTT-CTTTAGTC-TTGAGAGGGCGT-TGTA-GAACAGG-GTGATCCTCT-GGCACG--GTTATC----TTTTCATC-ATTACAG---TAGAGCT-ACTGGCAATTTCATTG-AAAGAAAAATGT-CTAA-T-A-TC-AAG--GGCATAA-TATTGG-GGGAAGAGAATAGAGT-TA-GGACAAT-ACTGCG--GAT-ATT-CATTTC-TACCTCC-TAGATGGA-ACTCGAACACTCTCT----AAGAGAATCAATGTGC--GTTA--TTGACAAG-TT-T--AGTAG-TG-TCTCA--GGCCTGAAAC-TT-AATATT---TCAAAA-TCACAAGC-AG-TTT-T-------GGA--------TNG-GTAG--TNAAA-ACT-AGGCTC-AG--C-AGAAA---C-T-CTGTGTC-G---TGATC--CGCGAAT-AACGGC--GGGATGTNAA-GATAA-GTT--CA-AACTTC-TT------GGAATACAAC-TTTACCAAAA-ATCT-CG-----AGGAT-ATCATA-----A------CGTA--ATTAT-CAA--TC----C-AAA-AT-----TTCAGCAATTAAAAG---NTTA-T--TAGG-ATCCT-------GGG-TGG---TAGAA----GAGA--TCTAACA--CCA--ATTAGG----AAA--TT--ACAA-TTATTAANACT-T-AG-CA-TGCC-TAAGCTGA-ATACN-----CTTATTTTCAGC-TNTG--------CC------------GAANATANT----C-----G--ACGAAAT-AA-TAAAATAT--TATTTCAA-T-TCA--TATGGG-GTTATAA---------GGTAAAAAG---------AAATACACTCGTT----GGT-AG--TTATGAGG--AGGGTGGAT----TAAACAT-GATTCACTTGTCTTCTTTC-GTTTCATATATCAAACTA-AAATGGGTTAAAC-GATA-CTTGGCA-AAAATAAAGGAATTTGGCAGCATTGCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTATTTATCAAAAGAAAANCTTCAAGAGTTTGTATTTTTTATTGGTAATGAT-TTTTGG--AGAGATGTTATTA---AAGCGTTGATACAGGTT---AAAAAAAGTC----CTGAACATGTATCAGACTAC-----CTGCGCTTAGATATTA--GAAA---TNTTTGCTG-T-GTG-AAAAAATGGGCACTTT--AT--TCAA-AATGGATTGGC-AAT---GGTGTTAAAAGATC---AGAGGACCT-GCG-A----T--GAAAATA-------GAAAT-A------TAGATGCTTTAATGAA--T-AAGGG-A-----GTGCTTGG--TA---CTAATAAC-TTTTT--AGACTATTTTC--ATGTGAT-ATCAAAAATACCCTCAAAAGTCAA
Reference ( family-828 ) : TAGTGGCCAGTATCCCAACGCGTATTNAGAAAACAGGTTCTNACACTTGGACATAATAATGTGACAACACAAAAGGGCTGTTCTANAAAGGACGTTTTCATACGTGGCGGAGAATTACTCCAGTTTTTCCCTAATATGGACCTTANATACACTACTTCTAAAGTCAAAGACAAAACCGGTATTGGATTAAACTATCTCCTCTATTCTAGGACTTTGATGACAAAGGCTTTTGACTCTTTGGAATGGGNTTTTATTAGGCAAGCCGCTCCTTAANTCATTCCAAATNTTGGTGAGCTCACTTATTAAATGG-TTCCA--TACATTTT-ATCT--TCTTCCAATACTAGTTGTGTAA-TAAA-AATAA--CATGGTCAT-TT-ATCAAGGTT-CTTTAGTC-TTGAGAGGGCGT-TGTA--AACAGG-GTGATCCTCT-GGCACG--GTTATC----TTTTCATC-ATTACAG---TAGAGCT-ACTGGCAATTTCATTG-AAAGAAAAATGT-CTAA-T-A-TC-AAG--GGCATAA-TATTGG-GGGAAGAGAATAGAGT-TA-GGACAAT-ACTGCG--GAT-ATT-CATTTC-TACCTCC-TAGATGGA-ACTCGAACACTCTCT----AAGAGAATCAATGTGC--GTTA--TTGACAAG-TT-T--AGTAG-TG-TCTCA--GGCCTGAAAC-TT-AATATT---TCAAAA-TCACAAGC-AG-TTT-T-------GGA--------TNG-GTAG--TNAAA-ACT-AGGCTC-AG--C-AGAAA---C-T-CTGTGTC-G---TGATC--CGCGAAT-AACGGC--GGGATGTNAA-GATAA-GTT--CA-AACTTC-TT------GGAATACAAC-TTTACCAAAA-ATCT-CG-----AGGAT-ATCATA-----A------CGTA--ATTAT-CAA--TC----C-AAA-AT-----TTCAGCAATTAAAAG---NTTA-T--TAGG-ATCCT-------GGG-TGG---TAGAA----GAGA--TCTAACA--CCA--ATTAGG----AAA--TT--ACAA-TTATTAANACT-T-AG-CA-TGCC-TAAGCTGA-ATACN-----CTTATTTTCAGC-TNTG--------CC------------GAANATANT----C-----G--ACGAAAT-AA-TAAAATAT--TATTTCAA-T-TCA--TATGGG-GTTATAA---------GGTAAAAAG---------AAATACACTCGTT----GGT-AG--TTATGAGG--AGGGTGGAT----TAAACAT-GATTCACTTGTCTTCTTTC-GTTTCATATATCAAACTA-AAATGGGTTAAAC-GATA-CTTGGCA-AAAATAAAGGAATTTGGCAGCATTGCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTATTTATCAAAAGAAAANCTTCAAGAGTTTGTATTTTTTATTGGTAATGAT-TTTTGG--AGAGATGTTATTA---AAGCGTTGATACAGGTT---AAAAAAAGTC----CTGAACATGTATCAGACTAC-----CTGCGCTTAGATATTA--GAAA---TNTTTGCTG-T-GTG-AAAAAATGGGCACTTT--AT--TCAA-AATGGATTGGC-AAT---GGTGTTAAAAGATC---AGAGGACCT-GCG-A----T--GAAAATA-------GAAAT-A------TAGATGCTTTAATGAA--T-AAGGG-A-----GTGCTTGG--TA---CTAATAAC-TTTTT--AGACTATTTTC--ATGTGAT-ATCAAAAATACCCTCAAAAGTCAA
gi|1 : GAGATCACTTATTGA-TGG-TTC-A--TACATTTTCATTTGATATTCCAATACTATTTGTGTAA-TAAAGAATAAAACATGG-CATATT-ATCAAGGTT--TTTAGTC-TTGAGAGGGTGT-------AACAGG-GTGA--CTCT-GACACC--GT-ATC----TTTTCATC-ATTA-AG---TAGAGCT-AC-GACAATTTCATTG-AAA---AAATGTTCTAA-TTA-TCGAAG--GGCA-AA-TATGGG-GGAAAGAGAATAGAGT-T---GACAAT-ATT-CA--GAT-A----ATTTC-T--CTCC-TAGATGGACACTTGAACACTCGCT----AAGAGAATCAATGTGT--GTTAA-TTG-CAAG-TTCT--AGTAG-TG-TCTCA--GGCCTGAAAT-TG-AATATT---TCAAAA-TCACAAGC-AGATTT-TTCGTTGAGGA--------TCGTGTAGCTTCAAA-TCG-AGGTTC-AG--CTAGAAATACC-TACTGTGCCTA---TGTT----GCAAATCAAC-GC--GGGCTATAAAGGATAATGTTTGCACAACTCCGTTTTAATGGAAACACAAC-TTTACCAAAACATAT-CGTTAGCAGAATAATCATA-----AACTATTCAAA--GTCATCCAAGTTCTTATC-AAATAT-----TCCAGCAA-TAAAAGAGATTTA-TCCTAGGAATCCT-------GGGTTAA---TAGAA----AAGACGTCTAATACTCCAACATCTGG----AG-------ACA-------AACACTGT-CG-C----CCATAACCCGA-ATAGA-----C--ATGATCAAC-TGTG--------AT------------AAAAATAATTTTGC-----GTAACAAAA--AA-TAATATGTTCTATTTCAA-T-TCA--TATGGG-GTTATA------------T---AAG---------ACACGCACACAGG----AGT-AGAATTATGAG
gi|1 : tggtagagaTTTTTTTTTTCAAAAGAAAAGTTTCAAGAGTTTGTGTTTTTTTGTGATAATGA--TTTTGG--AGAGATTTAATT----AAGCGTTGATAC-GGTT---AAAAAAAGT-----CTGAA-ATGTATCAGACTA------CTGTGC-TAGATATAA--GAAAATTTTTTTGCTG-T-GTG-AAAAAAT-GGCACTTT--AT--TCAACAATGGACTGACAAAT---GGTGTTAAAAGATT---AGA-GACCT-GGT-A----T---ATGATAT------GAAATAA------TAGATGCTTTAATGAA--TCAAGGG-A-----GTGCTTGG--TAACTCTAATAAC-TTTAT--AGAC-ATTTTC--ATGTGATAATCAAAAATA-CATCACAAATCAAcaaatacacatccctatatattaatcatgttgtggaggaggtgagactcacacacgtggaatatcacgaactttagactcatccgtgttttgtttcgattacacacagaatggaatggtgtaaaaggctgtagtagaagtatggggcaatgatagagattaacggtagtctggcagctatattatgcttaaaatggtcaatttcacccttaagatatatagatttcaattttttttttcaaaagaaaagtttcaagagtttgtgtttttttgtgataatgattttggagagatttaattaagcgttgatacggttaaaaaaagtctgaaatgtatcagactactgtgctagatataagaaaatttttttgctgtgtgaaaaaatggcactttattcaacaatggactgacaaatggtgttaaaagattagagacctggtatatgatatgaaataatagatgctttaatgaatcaagggagtgcttggtaactctaataactttatagacattttcatgtgataatcaaaaatacatcacaaatcaaaagatattattggattgaaagaaaggtagaagaataaaataatgaattaatgatgttcgtgcataatttattgtcaacatgtaattctaaatatttatcaaattttgaaaagaaaaggagtttaatagccccaatttaaaa
gi|17 : tggtagagagagatcacttattgatggttcatacattttcatttgatattccaatactatttgtgtaataaagaataaaacatggcatattatcaaggtttttagtcttgagagggtgtaacagggtgactctgacaccgtatcttttcatcattaagtagagctacgacaatttcattgaaaaaatgttctaattatcgaagggcaaatatgggggaaagagaatagagttgacaatattcagataatttctctcctagatggacacttgaacactcgctaagagaatcaatgtgtgttaattgcaagttctagtagtgtctcaggcctgaaattgaatatttcaaaatcacaagcagatttttcgttgaggatcgtgtagcttcaaatcgaggttcagctagaaatacctactgtgcctatgttgcaaatcaacgcgggctataaaggataatgtttgcacaactccgttttaatggaaacacaactttaccaaaacatatcgttagcagaataatcataaactattcaaagtcatccaagttcttatcaaatattccagcaataaaagagatttatcctaggaatcctgggttaatagaaaagacgtctaatactccaacatctggagacaaacactgtcgcccataacccgaatagacatgatcaactgtgataaaaataattttgcgtaacaaaaaataatatgttctatttcaattcatatggggttatataagacacgcacacaggagtagaattatgagcaaatacacatccctatatattaatcatgttgtggaggaggtgagactcacacacgtggaatatcacgaactttagactcatccgtgttttgtttcgattacacacagaatggaatggtgtaaaaggctgtagtagaagtatggggcaatgatagagattaacggtagtctggcagctatattatgcttaaaatggtcaatttcacccttaagatatatagatttcaaTT----GGT-AG--TTATGAGG--AGGGTGGAT----TAAACAT-CATTCAaagatattattggattgaaagaaaggtagaagaataaaataatgaattaatgatgttcgtgcataatttattgtcaacatgtaattctaaatatttatcaaattttgaaaagaaaaggagtttaatagccccaatttaaaa
gi|2 : TAGTG-TCA-TATCC-AAC-CGTATTAAGAAAACAGGTTCTGA-AT---GACATAATAA-GTGACA-CACAAAAGGG---TTTTAAAAAGGACGTT--CATA---GG-GGAAAAT-ACTC--GTTT---CCTA-TATG-ACCTTAT-TA-ACTA--TCTAAAG--AAAGA-AAAAC-GGT-TTGGATTA--CTA---CTTCTATT---AGACTTTGA----AAAAGTTTTTGACTCTT-GGAATGGGATTTTATTAG-CAAG--GCTC-TTAAATCATTC--AATTTTGGTGA-CTCACTTATTAAATGG-TTCCA--TACATTT--AT----TCTTCCAATACTAGTTGTGTAA-TAAA---TAA----TGGTCAT-TTTATCAAGGTT-CTTTAGTC-TTGAAAGGG-GT-TGTATAGACAGG-GTGATCCTCT-GGCACG----TATC----TTTTCATC-ATTACAG---TAGAGCT-ACTGGCAATTTCATTG-AAAGAAAA-TGT--TAA-T-A-TC-AAG--GGCATAACTATTGGTGGGAAGAGAATA-AGT-TA-GGACAAT-A-TGCA--GAT-ATT-CATTTC-TAC-TCC-TAGATGGA-ACT-GAACACTCTCT----AAGAGAATCAATGTGC--GTTA--TTGACAAG-TT-T--AGTAG-TG-TCTCA--GACCTGAAAC-TT-AATATT---CCAAAG-TCACAAGC-AG-TTT---------GGA--------TTG-GTAG--T-AAA-ACT--GGTTC-AG--C-AGAAA---C-T-CTGGGTC-C---TGATT--TGCAAAT-A-CAAT--GGGAT--CAA-GATAA-GTT--CA-AACTTC-TT------GGAATA-AAT-TTTACCAAAA-ATCT-TG-----AAGAT-ATCATA-----A------CATATAATTAT-TAA--TC----T-AAA-CT-----TTCAGCAATTAAAAG---GTTA-T--TAGG-ATCCT-------GGA-T-----TAGAA----GAGA--TCTAACA--CCA--ATTGGG----AAA--TT--ACAA-TTATTAAAACT-TTAG-CACTGCC-TAAGCTAATATACCGGTATTTTATTTTCAGC-TTTG--------CT------------GAATATACT----C-----G--ATGAAA--AT-TAAAATAT--TATTTAAA-T-TCA--TATGGG-GTTATAA---------GGTGAAAAG---------AAATACACTCATT----GGT-AG--TTATGAGG--AGGGTGGAT----TAAACAT-GATTCACTTGCCCTCTTTT-GTTTCATATATCAAACTA-AAATGGGTTAAAC-GATA-CTTGGCA-AAAATAAAGGAGTTTGGCAGCATTGCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTATTTATCAAAAGAAAAACTTCAAGAGTTTGTATTTTTTATTGATAATGA--TTTTGG--AGAGATGTTATTA---AAGCGTTGATACAGGTT---AAAAAAAGTC----TTGAACATGTATCAGACTACCGTAGCTGTGCTTAGATATTA--GAAA---TTTTTGCTG-T-GTGAAAAAAATGGGCACTTT--AT--TCAA-AACGGACTGTC-AAT---GGTGTTAAAAGATT---AGAGGACCT-GTG-A----TCGGAAAATG-------GAAAT-AT-----TAGATGCTTTAATGAAATT-AAGGG-A-----GTGCTTGG--TA---CTAATAAC-TTTTT--AGACTATTTTC--ATGTGAT-ATCAAAAATACCCTTAAAAGTCAAt
gi|3 : C--GTTA--TTGATAAG-TT-TTGAGTTG-TC-TCTCG--CGCTT---ACGTTGAATCTT---TCAAAAGTCACAGGC-AA-TTT-T-------GGT--------TGG-G--G--CAAAA-ATTCAGGCTC-AGATC-TGAAA---A---CTTTGTT-G---TGAACGACGTGAAT-AATGGTTGGGAATGTTAA--AGAA-TTT--AA-GGCTTC-TT------TGAATATAACATTTAC-AAAA-ATCTGCG-----ATG---AGCATGGTTTCA------CGTA--ATTAC-TAT--TC----CGAAA-ATGTGAATTC--CATTTAATCA---TTTAGT--TTGC-ATCCTGGAAATAGGG-TGGATATAAAACCGCGAGA--CTTAACA--CCA----TAGGTTTAAAA--TTGGACAATTTATCAACAC--T-AGCCC-TTCC-CAAGCTCC-TTCCA-----CTTATTTTCCGCATGTGGGCGTGATCCACCA--------AAAAACAAT----TGGATAG--ATGATATCAA-CAGAACAT--T-TTTCAA-TATTATTTATGGGTGATACAA---------AGTAGAAAGGTTGAAAATAAATACAATTGTTTTCAGGTAAA--TTATGAGGCAAGGGGGGATGGGCTTAATATCGGTTCAGTTGTCTCCTTTCAATTTCTTACATCAAGTTAGAAATGGGTCAAACAGGTA-CCTGTCAGAAAATGAGGGAATTGGGCA
gi|3 : GTAATGTTGTTCTGGTAAGAGATGTT-TTATAGAAGTGGTAGCAAAAGCTTATAACAAAAGTTACTTTTGAATGTGTCTAGGAATAC-----TTACAATTAGACATAAAGGAAA----CTTTGTTGATAGT--AAAAAATGGGAATTTTTAGT--ACAA-AATGG-TGGGA-AATAAAGGTATCAAAAaaactcttgtgtatgcatccaagtacttgtaaacctttaaattgtgtgattctatgttttatttgggcaaagaacaaatatgtgattattgcatggcaagttgtaatgttgttctggtaagagatgttttatagaagtggtagcaaaagcttataacaaaagttacttttgaatgtgtctaggaatacttacaattagacataaaggaaactttgttgatagtaaaaaatgggaatttttagtacaaaatggtgggaaataaaggtatcaaaacctttagacattggacttttttaaagtaaaacaagaaatggaactttttaaatgttttaa
gi|4 : cgttattgataagttttgagttgtctctcgcgcttacgttgaatctttcaaaagtcacaggcaattttggttggggcaaaaattcaggctcagatctgaaaactttgttgtgaacgacgtgaataatggttgggaatgttaaagaatttaaggcttctttgaatataacatttacaaaaatctgcgatgagcatggtttcacgtaattactattccgaaaatgtgaattccatttaatcatttagtttgcatcctggaaatagggtggatataaaaccgcgagacttaacaccataggtttaaaattggacaatttatcaacactagcccttcccaagctccttccacttattttccgcatgtgggcgtgatccaccaaaaaacaattggatagatgatatcaacagaacatttttcaatattatttatgggtgatacaaagtagaaaggttgaaaataaatacaattgttttcaggtaaattatgaggcaaggggggatgggcttaatatcggttcagttgtctcctttcaatttcttacatcaagttagaaatgggtcaaacaggtacctgtcagaaaatgagggaattgggcaaaactcttgtgtatgcatccaagtacttgtaaacctttaaattgtgtgattctatgttttatttgggcaaagaacaaatatgtgattattgcatggcaagttTGTAAA-GATAA-GTT--CA-AAGTTT-TT------GGAATA-AAT-TTTACCAAAA-ACCT-TG-----AGGAT-ATCATA-----A---------A--ATTAT-CAA--TC----C-AAA-AT-----TTCAGCAATTAAAAG---GTTA-T--TAGG-ATCCT-------GGG---G---TGAAA----GAGA--TTTAAAA--TCA--ATTAGG----AAAAATT--ACAA-TTATTAAAACT-T-AG-CA-TGCC-TAAGCTGA--TACC-----TTTATTTTCAGC-TTTG--------CCTGACCTTCCAAAGAATATGTT----G-----G--ATGAAAT-AAATAAAATAT--TTTTTCAAAT-TCA--TTTGAG-GTTATAAAACAGAAAAGGTAAAAAG---------AAATACACTCATT----GGT-AG--TTATGAGG--AGGGTGGAT----TAAACAT-GATTCACTTGTCTTCTTTT-GTTTCATATATCACACTA-ACATGGGTTAAAC-GATACCTTAGCA-AAAATAAAGGGATCTGGAAGCATTcctttagacattggacttttttaaagtaaaacaagaaatggaactttttaaatgttttaa
gi|4 : gTTTTATTTATCAAAAGAAAATCTTCAATAGTTTGTATTTTT-ATTGGAAATGAT-TTTTGG--AGAGATGTTATAA---AAGCATTGATACAAGTT----AAAAAAGAC----CTGATCATGTATCACACTAT-----CTACACTCAGGTATTA--GAAA---TGTTT-CTG-T-GTG-AAAAAGTGGGCACGTT--ATAATCAA-AATGGATCGAC-AA-----------------C---AGAGGACCTGGTGTA----T--GGAAATAATTGCGTGCAAT-AAAGATCTAGAAGTTTTAATGAA--T-AAGGGCAGGGATGTGCTTGGTTTT---CTA--AACTTTTTT--AGACTATTTTCATATGTGAT-ATC-AAAATG-TCTCAAAAGTCAAtggtacaatgcatgttcaaccttaaaaatatagattttattttttatttatcaaaagaaaatcttcaatagtttgtatttttattggaaatgatttttggagagatgttataaaagcattgatacaagttaaaaaagacctgatcatgtatcacactatctacactcaggtattagaaatgtttctgtgtgaaaaagtgggcacgttataatcaaaatggatcgacaacagaggacctggtgtatggaaataattgcgtgcaataaagatctagaagttttaatgaataagggcagggatgtgcttggttttctaaacttttttagactattttcatatgtgatatcaaaatgtctcaaaagtcaaagagatattattacattgacaaga
gi|5 : gtgtaaagataagttcaaagtttttggaataaattttaccaaaaaccttgaggatatcataaaattatcaatccaaaatttcagcaattaaaaggttattaggatcctggggtgaaagagatttaaaatcaattaggaaaaattacaattattaaaacttagcatgcctaagctgatacctttattttcagctttgcctgaccttccaaagaatatgttggatgaaataaataaaatattttttcaaattcatttgaggttataaaacagaaaaggtaaaaagaaatacactcattggtagttatgaggagggtggattaaacatgattcacttgtcttcttttgtttcatatatcacactaacatgggttaaacgataccttagcaaaaataaagggatctggaagcatttggtacaatgcatgttcaaccttaaaaatatagattttattTAGTGGCCAGTATCCCAACGCGTATTTAAAAA---GGTTCTCACACTTGGACATAATAATGTGACAACACAAAAGGGCTGTTCTATAAAGGACGTTTTCATACGTGGCAGAGAATTACTCCAGTTTTTCCCTAATATGGACCTTAAATACACTACTTCTAAAGTCAAAGACAAAACCAGTATTGGATTAAACTATCTCCTCTATTCTAGGACTTTGATGACAAAGGCTTTTGACTCTTTGGAATGGATTTTTATTAGGCAAGCCGTTCCTTAACTCATTTCAAATGTTGGTGAGCTCACTTATTAAATGGTTTCCATTTACATTTT-ATCTC-TCTCCCAATACTAG-TGTGTAAGT--A-AAT-A--CATGGTCAT-TT-ATCAAGGTTGCTTTAGTCATTGAGAGGGCGTATGTAGGAACAGGAGTGATCCTCTGGGCACGGCGTTATCCTCTCTTTCATCGATTACAGTACTAGAGCTAACTGGCAATTTCATTGAAAAGAAAAATGA-TTAACT-ACTC-AAGAAGGCATAT-CTTTGG-GGGAAGAGAATAAAGTATAGGGACAATCACTGCGACGATGATTCCATTTCTTACCTCCTTAGATGGA-ACTCGAACAC-CTCTTAACGAGAGATCCAATGTGCTGATTATCTTGACAAGATT-T--AGTAGCTGCTCTCATCGGCCTGAA---CT-AATATCCTATCAAAA-TCACAAGCTAG-TCTAT-------GGAAAACTGGTTAG-GT-G--TTAAACACT-GGCCTCAAG--C-AGAAA---CAT-CT-TGTT-GGACTGATagagatattattacattgacaaga
gi|8 : TGCTATTA---AAGCAATAGCAAACGTT---AAGAAAAGTT----CTGAACATGTATTAGACTAC-----TTGAACTTAGATATTA--GAAA---TGTTTGCTG-T-GTA-AAAAAATGGGAAATTT--CT--TCTA-AATGGGTTGGT-AAT---GGTGTTAAA--ATCTAAAGAGGTCC---CG-ATCTCT--GAAAACA-------GAAAT-A--------------------------AAAGA-A-----GTGCTTGG--CA---ATAATA---TTTTTAAAGATTATTTTC--ATGTAGT-ATCAAATATACCCTAAAAAGTCAA
blockSeqs : G G C G T . C CACTTG T A CTG T TT CGT C T CA TTC A G AA C CT TC C C A AA TCT CTA TGAC T T G CC C C CA G G A T C TT TATCTC T GTAAATAC T . T GC A C ATGTAGG A T G GCGTTATCCTCT G C TAC A T A G A T CTAC . AA T C T A ATAG CACTGCGAC GATTC TTACC T . C T TAAC TG TC A A TTG C C TC G ACGTTG CTA G T . ATGGAAAACTGGTTAGGTGTT C CA A AT . ACTTTGTTGTGAACGAC AATGGTTG G C G . . . . . T A C . G . AT GTTTCACGTA . . CG . GTGAA A T G GT . GGAAATAGGGTGGATA CCGC . . A G TTTAAAATTGG AT A TTTAGCAC G . TATACCGGTATTT A T GGCGTGATCCACCAAAAAACAATTGGATAG T TC A TA TA TT T AAGTAGAAAGGTTGAAAAT A TTCA A . CA GGGC C CA G A C G A T TG TA ATAG T AG TATA TACTT C CCGTAG T T AG TT A A GA TAGT . A T . TAAA ATCTAA G TGGTGTATGGAAATAATTGCGTGCAATAAAGATCT T ATT CAGGGAT TTTT A A T AA T AT . A C
blockSeqs : . A . C . AT . TAAATAA T . . C . . TGTATA . T . TATC . C . . T . G . . TA . . T . . . TA ATGCA ATT TAC . . . . . . . A . T . . . G ACTT . . . . GGATTGGTAGT . G . . . CTCTGGGTCCTGATTT ACAAT G T G . . . . . . . C . . . AT ACATATA . . T . . A T T T . GGAT . . . A A AAAAATT A C TAGCCC T . TTCCACT . G CCTGACCTTCCAAAGAATATGTTGG T T . TT AT . . AAACAGAAAAGGTAAAAAG G . . . . . . T . . . . T . T . A G AA A C T C C A . TG . . G ATAA . A G . T AGATT G TGTGATCGGAAAATGGAAATATT A T A TA A A . . T . . A C
blockSeqs : . . A . T . . . . CT . . . . TGGTTGGGGCA . . . . . . A . . . . . . . . . . . . . AA . . C . . . T G T . GGGG . . . . A AAATT A A TTAGCA G . TACCTT . T CTGAATATACTCG T . . T T . . AGGTGAAAAG A . . . . . . . . A T AA A C C T C T . TG . . A AT . G A . T C G CGATCTCTGAAAACAGAAATA . . A CA . . . . T . . . .
blockSeqs : . . . A A AC . T C C A T . C . . . CT . . G . .
blockSeqCons : ** A*** AA C**** C***** TG*** NT****
originalCons : TAGTGGCCAGTATCCCAACGCGTATTNAGAAAACAGGTTCTNACACTTGGACATAATAATGTGACAACACAAAAGGGCTGTTCTANAAAGGACGTTTTCATACGTGGCGGAGAATTACTCCAGTTTTTCCCTAATATGGACCTTANATACACTACTTCTAAAGTCAAAGACAAAACCGGTATTGGATTAAACTATCTCCTCTATTCTAGGACTTTGATGACAAAGGCTTTTGACTCTTTGGAATGGGNTTTTATTAGGCAAGCCGCTCCTTAANTCATTCCAAATNTTGGTGAGCTCACTTATTAAATGG-TTCCA--TACATTTT-ATCT--TCTTCCAATACTAGTTGTGTAA-TAAA-AATAA--CATGGTCAT-TT-ATCAAGGTT-CTTTAGTC-TTGAGAGGGCGT-TGTA-GAACAGG-GTGATCCTCT-GGCACG--GTTATC----TTTTCATC-ATTACAG---TAGAGCT-ACTGGCAATTTCATTG-AAAGAAAAATGT-CTAA-T-A-TC-AAG--GGCATAA-TATTGG-GGGAAGAGAATAGAGT-TA-GGACAAT-ACTGCG--GAT-ATT-CATTTC-TACCTCC-TAGATGGA-ACTCGAACACTCTCT----AAGAGAATCAATGTGC--GTTA--TTGACAAG-TT-T--AGTAG-TG-TCTCA--GGCCTGAAAC-TT-AATATT---TCAAAA-TCACAAGC-AG-TTT-T-------GGA--------TNG-GTAG--TNAAA-ACT-AGGCTC-AG--C-AGAAA---C-T-CTGTGTC-G---TGATC--CGCGAAT-AACGGC--GGGATGTNAA-GATAA-GTT--CA-AACTTC-TT------GGAATACAAC-TTTACCAAAA-ATCT-CG-----AGGAT-ATCATA-----A------CGTA--ATTAT-CAA--TC----C-AAA-AT-----TTCAGCAATTAAAAG---NTTA-T--TAGG-ATCCT-------GGG-TGG---TAGAA----GAGA--TCTAACA--CCA--ATTAGG----AAA--TT--ACAA-TTATTAANACT-T-AG-CA-TGCC-TAAGCTGA-ATACN-----CTTATTTTCAGC-TNTG--------CC------------GAANATANT----C-----G--ACGAAAT-AA-TAAAATAT--TATTTCAA-T-TCA--TATGGG-GTTATAA---------GGTAAAAAG---------AAATACACTCGTT----GGT-AG--TTATGAGG--AGGGTGGAT----TAAACAT-GATTCACTTGTCTTCTTTC-GTTTCATATATCAAACTA-AAATGGGTTAAAC-GATA-CTTGGCA-AAAATAAAGGAATTTGGCAGCATTGCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTATTTATCAAAAGAAAANCTTCAAGAGTTTGTATTTTTTATTGGTAATGAT-TTTTGG--AGAGATGTTATTA---AAGCGTTGATACAGGTT---AAAAAAAGTC----CTGAACATGTATCAGACTAC-----CTGCGCTTAGATATTA--GAAA---TNTTTGCTG-T-GTG-AAAAAATGGGCACTTT--AT--TCAA-AATGGATTGGC-AAT---GGTGTTAAAAGATC---AGAGGACCT-GCG-A----T--GAAAATA-------GAAAT-A------TAGATGCTTTAATGAA--T-AAGGG-A-----GTGCTTGG--TA---CTAATAAC-TTTTT--AGACTATTTTC--ATGTGAT-ATCAAAAATACCCTCAAAAGTCAA
finalCons : TAGTGGCCAGTATCCCAACGCGTATTNAGAAAACAGGTTCTNACACTTGGACATAATAATGTGACAACACAAAAGGGCTGTTCTANAAAGGACGTTTTCATACGTGGCGGAGAATTACTCCAGTTTTTCCCTAATATGGACCTTANATACACTACTTCTAAAGTCAAAGACAAAACCGGTATTGGATTAAACTATCTCCTCTATTCTAGGACTTTGATGACAAAGGCTTTTGACTCTTTGGAATGGGNTTTTATTAGGCAAGCCGCTCCTTAANTCATTCCAAATNTTGGTGAGCTCACTTATTAAATGG-TTCCA--TACATTTT-ATCT--TCTTCCAATACTAGTTGTGTAA-TAAA-AATAA--CATGGTCAT-TT-ATCAAGGTT-CTTTAGTC-TTGAGAGGGCGT-TGTA-GAACAGG-GTGATCCTCT-GGCACG--GTTATC----TTTTCATC-ATTACAG---TAGAGCT-ACTGGCAATTTCATTG-AAAGAAAAATGT-CTAA-T-A-TC-AAG--GGCATAA-TATTGG-GGGAAGAGAATAGAGT-TA-GGACAAT-ACTGCG--GAT-ATT-CATTTC-TACCTCC-TAGATGGA-ACTCGAACACTCTCT----AAGAGAATCAATGTGC--GTTA--TTGACAAG-TT-T--AGTAG-TG-TCTCA--GGCCTGAAAC-TT-AATATT---TCAAAA-TCACAAGC-AG-TTT-T-------GGA--------TNG-GTAG--TNAAA-ACT-AGGCTC-AG--C-AGAAA---C-T-CTGTGTC-G---TGATC--CGCGAAT-AACGGC--GGGATGTNAA-GATAA-GTT--CA-AACTTC-TT------GGAATACAAC-TTTACCAAAA-ATCT-CG-----AGGAT-ATCATA-----A------CGTA--ATTAT-CAA--TC----C-AAA-AT-----TTCAGCAATTAAAAG---NTTA-T--TAGG-ATCCT-------GGG-TGG---TAGAA----GAGA--TCTAACA--CCA--ATTAGG----AAA--TT--ACAA-TTATTAANACT-T-AG-CA-TGCC-TAAGCTGA-ATACN-----CTTATTTTCAGC-TNTG--------CC------------GAANATANT----C-----G--ACGAAAT-AA-TAAAATAT--TATTTCAA-T-TCA--TATGGG-GTTATAA---------GGTAAAAAG---------AAATACACTCGTT----GGT-AG--TTATGAGG--AGGGTGGAT----TAAACAT-GATTCACTTGTCTTCTTTC-GTTTCATATATCAAACTA-AAATGGGTTAAAC-GATA-CTTGGCA-AAAATAAAGGAATTTGGCAGCATTGCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTATTTATCAAAAGAAAANCTTCAAGAGTTTGTATTTTTTATTGGTAATGAT-TTTTGG--AGAGATGTTATTA---AAGCGTTGATACAAGTT---AAAAAAAGTC----CTGAACATGTATCAGACTAC-----CTGCGCTTAGATATTA--GAAATG---TTTGCTG-T-GTG-AAAAAATGGGCACTTTNT----TCAA-AATGGATTGGC-AAT---GGTGTTAAAAGATC---AGAGGACCT-GCG-A----T--GAAAATA-------GAAAT-A------TAGATGCTTTAATGAA--T-AAGGG-A-----GTGCTTGG--TA---CTAATAAC-TTTTT--AGACTATTTTC--ATGTGAT-ATCAAAAATACCCTCAAAAGTCAA
10 sequences could not be aligned to this reference sequence:
Unaligned ( gi|6 ): TAGGAATTGAGAGCCCCAACACTAAAAACAAAATAAGTGGGGAAACTTTATTAGATGAATCCATATCTGATAAAGACTGGAGATTTTATTTTGTAAATGCATCATAATGTACAAAAGGATACAAAATGAATTTATTTTCAATACCGAATCTGATGAATTATATTACTACCAACTCTTTTCTTCATAAAATTAAAATTTCAGATAATATTTGCGTATTTTTTTGTACTGTGAAGCAGAAACAATAACTCGCATATTTTATGATTGTGTACACATCAACTTATTTTGAATGATTTTTGTGCAGTGGTTTAATGTATAAGATATCAAAAAGAAAATTGTTTTACTCGGTAATAATGAAGAAAAGCTGTTAGAAAATTGTCTTTTATTGGTTGCAGAAAGTGTATTATTTTTTTAAAATCACAATTTAAGGCCTTAGCCCAAAAATTTTCCGAGGCAGTGACTTTATTTAAGTATTTAGAAATAGGAATTACTGTGAAAATGTATTCAAATGTAAATCCAAAATACTTGCAAAGGGCAATATATGATATTGTACAAAACAAGTAAGAATGGAAAACCAGGTATATATAAG
Unaligned ( gi|7 ): AAAAAGTGGGAAACTTATATAGATAACCTTATCTGACAAAGACTGGAAATTTTATTTTTAAATGTTTTCGTTATGTACGAAGGATACAAAAATAATTTATTATTCAAATACGCGAAATATCTGATGAACTATAATTGCTACCAACTCCTTATCATTTAAAATCAAACTTTCTGATAGAAGATTTTTGTGTTACTTTGTTACACATCCTGAGCAGAAACAATTAACTTGTACCATACTTCTCACATGATTTGATGTGGGATAGGTCCAATCAAGAGTGTTATTTGGAGATATGACTTTATAGGTGAGCTGGAATTTAATGATAATTCTGAAAAACATGATTAGATTAAATACATCAAAAAGCAATTAATAACTTGTGTTGGTGTATATACTTTTGTTGTAATCA
Unaligned ( gi|9 ): TTACATTGCTATAACTCGTTCCTTCACAAACTTAAACTTGTAGAAAATGACAAATGTTCTCTTTGTAAATGTGAAAGAGAAACAATTTCTCATATATTTATGATTGTAATATCACCCTAGCCTTTTGGGGAGATTTTGTGAAATGGAACAGTGCTGTTGAAAAGGATTATAAGATTTCGAAAAGAATTGTATTACTTGGANNNNNNNNNNNNNNNNNNNNNNNNNAATATATCTTTATTA
Unaligned ( gi|10 ): AAGAGAGATATATTATTGCATTGAAAGAAGGTAAATAGATGCAAACGATGAACATACTAAAAATAATAATTATTGTCAACATGTAATATGAAATATTTATATCAAATTTTTAAAAGAAAGGAGATTTATAGCCCAACATAAA
Unaligned ( gi|11 ): AGAGAGATATATTATTGCATTGAAAGAAGGTAAAATAGATGCAAACGATGAACATACTAAAAAATAATAATTATTGTCAACATGTAATATGAATATTTATATCAAATTTTTAAAAGAAAGGAGATATACCCCAACATAAAA
Unaligned ( gi|12 ): TATTATTGCATTGAAAGAAGGTAAAATAGATGCAAACGATGAACATACTAAAAATAATAATTATTGTCAACATGTAATATGAAATATTTATATCAAATTTTAAAAGAAAGGAGATTATAGCCCCAACATAAA
Unaligned ( gi|13 ): AGCTAGGATCAGAATAATATGAACATTCTGAAATATATCTGTTGTCCCATAAAAATGTTAGTGAAATTGTAGATACGAAATATTTATATAAACT
Unaligned ( gi|14 ): GAGATATTATTGGATTGAAAGAAGGTAGGATAGATAAAAATAATGAAGTACGGAATGTGTCGTCAACATGTAATTCGAAATATTTATATCAA
Unaligned ( gi|15 ): AAGGATACAAAAATAATTTATTTTCAATAACGAATACTGATTAATTATATTGCTACCAACTCCTTTCTTC
Unaligned ( gi|16 ): TGAAAATGTATTTGAATGTAAATCTAAAATACTAAGCAAATGGGCAAATAT
Alignments
lowQualScore : 11111111111111111111111111111111111111111111
lowQualScore : 1 1 1 1 222 222222 1 1 222 11 222 1 1 11 222 1 1 11 1 11 11 1 1 1 11 222 222 2222 1 1 11 1 11 1 11 44444444 33333333333333 1 1 22 1 1 444444444 1 1 333333333333 1 222 1 1 22 22222 1 11 1 1 1 2222 222222222 22222 11111 1 1 1 2222 11 22 1 1111 1 1 11 111111 111 1 1 1 66666666666666666666666666666666 1 11 1 11 1 444444444444444444444444444 333333333 11 1 11 1 1 222222 1 1 1 1 22222 111 555555555555555555 1 11 222222 1 22222 1111 1111 1 55555555555555555 2222 11 11 111 3333333333333 11 2222222222 1 3333333333333 1 00000000000000000000000000000000000000000000 22 1 1111 111 11 1 4444444444444444444444444444 1111 11 11 2222 1 11 1 1 1 1 7777777777777777777777777777777777777777777777777777777777777777777777777 22 11 1111 111111 1111 22222 222222 11 11111 11 111111 1111 11111111 555555555555555555555555555555555555555555 2222 2222222 2222222 1 11 11 1 1
lowQualScore : 5 5 5 5 1 111 1 555555 5 5 000 1 88 000 5 5 88 111 5 5 66 5 88 88 5 5 5 88 111 111 3333 5 1 5 77 5 1 88 1 6 7 3 6 88 55555555 7 55555555555555 7 3 3 00 3 2 111111111 3 7 3 111111111111 3 6 333 3 7 3 6 7 55 22222 3 88 7 3 3 2 5555 333333333 44444 66666 3 3 2 7 8888 33 33 3 0 4444 0 0 33 2 555555 777 0 0 0 33333333333333333333333333333333 0 77 0 33 0 444444444444444444444444444 0 333333333 6 1 22 0 33 0 0 888888 9 0 2 0 0 55555 0 000 999999999999999999 0 33 555555 0 55555 3 3 8888 4444 0 00000000000000000 1111 33 0 33 777 1 1111111111111 33 0 1 0000000000 2 0 0 1111111111111 0 1 66666666666666666666666666666666666666666666 2 55 0 4444 111 33 0 7777777777777777777777777777 2 7777 8 11 33 1111 0 44 3 3 3 3 3333333333333333333333333333333333333333333333333333333333333333333333333 1 7 55 33 0 4444 5 111111 4444 33333 3 333333 1 0 1 11 88888 8 8 11 444444 8 3 1 8 4444 77777777 2 222222222222222222222222222222222222222222 3 0 0000 6666666 3333333 3 3 0 33 3 33 0 3 5 0
lowQualScore : . . . . . ... . ...... . . ... . .. ... . . .. ... . . .. . .. .. . . . .. ... ... .... . . . .. . . .. . . . . . .. ........ . .............. . . . .. . . ......... . . . ............ . . ... . . . . . .. ..... . .. . . . . .... ......... ..... ..... . . . . .... .. .. . . .... . . .. . ...... ... . . . ................................ . .. . .. . ........................... . ......... . . .. . .. . . ...... . . . . . ..... . ... .................. . .. ...... . ..... . . .... .... . ................. .... .. . .. ... . ............. .. . . .......... . . . ............. . . ............................................ . .. . .... ... .. . ............................ . .... . .. .. .... . .. . . . . ......................................................................... . . .. .. . .... . ...... .... ..... . ...... . . . .. ..... . . .. ...... . . . . .... ........ . .......................................... . . .... ....... ....... . . . .. . .. . . . .
lowQualScore : 0 0 0 0 0 000 0 000000 5 5 555 0 55 555 0 5 00 000 5 0 55 0 00 00 0 0 5 55 000 000 5555 5 0 0 55 0 0 00 0 7 3 3 7 33 33333333 3 77777777777777 3 3 3 00 3 0 333333333 3 3 3 777777777777 3 7 333 3 3 3 7 3 33 00000 3 33 3 3 3 0 0000 000000000 00000 77777 3 3 0 3 3333 88 88 2 0 8888 0 0 88 5 222222 555 0 0 0 22222222222222222222222222222222 0 00 0 88 0 222222222222222222222222222 7 333333333 5 0 55 0 88 0 0 888888 0 0 5 0 0 00000 2 222 888888888888888888 0 88 222222 0 00000 2 2 5555 8888 0 22222222222222222 2222 88 2 88 000 2 8888888888888 22 8 0 5555555555 5 0 2 2222222222222 0 0 88888888888888888888888888888888888888888888 0 55 0 5555 000 88 0 5555555555555555555555555555 0 0000 0 00 88 2222 0 00 3 3 3 3 0000000000000000000000000000000000000000000000000000000000000000000000000 0 3 55 88 8 8888 6 888888 8888 44444 2 222222 4 8 4 00 00000 0 0 22 000000 0 8 4 0 8888 66666666 5 555555555555555555555555555555555555555555 5 2 8888 0000000 5555555 2 2 0 88 2 88 0 2 0 2
consensus : TAGTGGCCAGTATCCCAACGCGTATTNAGAAAACAGGTTCTNACACTTGGACATAATAATGTGACAACACAAAAGGGCTGTTCTANAAAGGACGTTTTCATACGTGGCGGAGAATTACTCCAGTTTTTCCCTAATATGGACCTTANATACACTACTTCTAAAGTCAAAGACAAAACCGGTATTGGATTAAACTATCTCCTCTATTCTAGGACTTTGATGACAAAGGCTTTTGACTCTTTGGAATGGGNTTTTATTAGGCAAGCCGCTCCTTAANTCATTCCAAATNTTGGTGAGCTCACTTATTAAATGG-TTCCA--TACATTTT-ATCT--TCTTCCAATACTAGTTGTGTAA-TAAA-AATAA--CATGGTCAT-TT-ATCAAGGTT-CTTTAGTC-TTGAGAGGGCGT-TGTA--A-ACAGG-GTGATCCTCT-GGCACG--GTTATC----TTTTCATC-ATTACAG---TAGAGCT-ACTGGCAATTTCATTG-AAAGAAAAATGT-CTAA-T-A-TC-AAG--GGCATAA-TATTGG-GGGAAGAGAATAGAGT-TA-GGACAAT-ACTGCG--GAT-ATT-CATTTC-TACCTCC-TAGATGGA-ACTCGAACACTCTCT----AAGAGAATCAATGTGC--GTTA--TTGACAAG-TT-T--AGTAG-TG-TCTCA--GGCCTGAAAC-TT-AATATT---TCAAAA-TCACAAGC-AG-TTT-T-------GGA--------TNG-GTAG--TNAAA-ACT-AGGCTC-AG--C-AGAAA---C-T-CTGTGTC-G---TGATC--CGCGAAT-AACGGC--GGGATGTNAA-GATAA-GTT--CA-AACTTC-TT------GGAATACAAC-TTTACCAAAA-ATCT-CG-----AGGAT-ATCATA-----A------CGTA--ATTAT-CAA--TC----C-AAA-AT-----TTCAGCAATTAAAAG---NTTA-T--TAGG-ATCCT-------GGG-TGG---TAGAA----GAGA--TCTAACA--CCA--ATTAGG----AAA--TT--ACAA-TTATTAANACT-T-AG-CA-TGCC-TAAGCTGA-ATACN-----CTTATTTTCAGC-TNTG--------CC------------GAANATANT----C-----G--ACGAAAT-AA-TAAAATAT--TATTTCAA-T-TCA--TATGGG-GTTATAA---------GGTAAAAAG---------AAATACACTCGTT----GGT-AG--TTATGAGG--AGGGTGGAT----TAAACAT-GATTCACTTGTCTTCTTTC-GTTTCATATATCAAACTA-AAATGGGTTAAAC-GATA-CTTGGCA-AAAATAAAGGAATTTGGCAGCATTGCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTATTTATCAAAAGAAAANCTTCAAGAGTTTGTATTTTTTATTGGTAATGAT-TTTTGG--AGAGATGTTATTA---AAGCGTTGATA-CAA--GTT---AAAAAAAGTC----CTGAACATGTATCAGACTAC-----CTGCGCTTAGATATTA--GAAA---TNTTTGCTG-T-GTG-AAAAAATGGGCACTTT--AT--TCAA-AATGGATTGGC-AAT---GGTGTTAAAAGATC---AGAGGACCT-GCG-A----T--GAAAATA-------GAAAT-A------TAGATGCTTTAATGAA--T-AAGGG-A-----GTGCTTGG--TA---CTAATAAC-TTTTT--AGACTATTTTC--ATGTGAT-ATCAAAAATACCCTCAAAAGTCAA
Reference ( family-828 ) : TAGTGGCCAGTATCCCAACGCGTATTNAGAAAACAGGTTCTNACACTTGGACATAATAATGTGACAACACAAAAGGGCTGTTCTANAAAGGACGTTTTCATACGTGGCGGAGAATTACTCCAGTTTTTCCCTAATATGGACCTTANATACACTACTTCTAAAGTCAAAGACAAAACCGGTATTGGATTAAACTATCTCCTCTATTCTAGGACTTTGATGACAAAGGCTTTTGACTCTTTGGAATGGGNTTTTATTAGGCAAGCCGCTCCTTAANTCATTCCAAATNTTGGTGAGCTCACTTATTAAATGG-TTCCA--TACATTTT-ATCT--TCTTCCAATACTAGTTGTGTAA-TAAA-AATAA--CATGGTCAT-TT-ATCAAGGTT-CTTTAGTC-TTGAGAGGGCGT-TGTA-GA-ACAGG-GTGATCCTCT-GGCACG--GTTATC----TTTTCATC-ATTACAG---TAGAGCT-ACTGGCAATTTCATTG-AAAGAAAAATGT-CTAA-T-A-TC-AAG--GGCATAA-TATTGG-GGGAAGAGAATAGAGT-TA-GGACAAT-ACTGCG--GAT-ATT-CATTTC-TACCTCC-TAGATGGA-ACTCGAACACTCTCT----AAGAGAATCAATGTGC--GTTA--TTGACAAG-TT-T--AGTAG-TG-TCTCA--GGCCTGAAAC-TT-AATATT---TCAAAA-TCACAAGC-AG-TTT-T-------GGA--------TNG-GTAG--TNAAA-ACT-AGGCTC-AG--C-AGAAA---C-T-CTGTGTC-G---TGATC--CGCGAAT-AACGGC--GGGATGTNAA-GATAA-GTT--CA-AACTTC-TT------GGAATACAAC-TTTACCAAAA-ATCT-CG-----AGGAT-ATCATA-----A------CGTA--ATTAT-CAA--TC----C-AAA-AT-----TTCAGCAATTAAAAG---NTTA-T--TAGG-ATCCT-------GGG-TGG---TAGAA----GAGA--TCTAACA--CCA--ATTAGG----AAA--TT--ACAA-TTATTAANACT-T-AG-CA-TGCC-TAAGCTGA-ATACN-----CTTATTTTCAGC-TNTG--------CC------------GAANATANT----C-----G--ACGAAAT-AA-TAAAATAT--TATTTCAA-T-TCA--TATGGG-GTTATAA---------GGTAAAAAG---------AAATACACTCGTT----GGT-AG--TTATGAGG--AGGGTGGAT----TAAACAT-GATTCACTTGTCTTCTTTC-GTTTCATATATCAAACTA-AAATGGGTTAAAC-GATA-CTTGGCA-AAAATAAAGGAATTTGGCAGCATTGCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTATTTATCAAAAGAAAANCTTCAAGAGTTTGTATTTTTTATTGGTAATGAT-TTTTGG--AGAGATGTTATTA---AAGCGTTGATA-CAA--GTT---AAAAAAAGTC----CTGAACATGTATCAGACTAC-----CTGCGCTTAGATATTA--GAAA---TGTTTGCTG-T-GTG-AAAAAATGGGCACTTT--NT--TCAA-AATGGATTGGC-AAT---GGTGTTAAAAGATC---AGAGGACCT-GCG-A----T--GAAAATA-------GAAAT-A------TAGATGCTTTAATGAA--T-AAGGG-A-----GTGCTTGG--TA---CTAATAAC-TTTTT--AGACTATTTTC--ATGTGAT-ATCAAAAATACCCTCAAAAGTCAA
gi|1 : GAGATCACTTATTGA-TGG-TTC-A--TACATTTTCATTTGATATTCCAATACTATTTGTGTAA-TAAAGAATAAAACATGG-CATATT-ATCAAGGTT--TTTAGTC-TTGAGAGGGTGT-------A-ACAGG-GTGA--CTCT-GACACC--GT-ATC----TTTTCATC-ATTA-AG---TAGAGCT-AC-GACAATTTCATTG-AAA---AAATGTTCTAA-TTA-TCGAAG--GGCA-AA-TATGGG-GGAAAGAGAATAGAGT-T---GACAAT-ATT-CA--GAT-A----ATTTC-T--CTCC-TAGATGGACACTTGAACACTCGCT----AAGAGAATCAATGTGT--GTTAA-TTG-CAAG-TTCT--AGTAG-TG-TCTCA--GGCCTGAAAT-TG-AATATT---TCAAAA-TCACAAGC-AGATTT-TTCGTTGAGGA--------TCGTGTAGCTTCAAA-TCG-AGGTTC-AG--CTAGAAATACC-TACTGTGCCTA---TGTT----GCAAATCAAC-GC--GGGCTATAAAGGATAATGTTTGCACAACTCCGTTTTAATGGAAACACAAC-TTTACCAAAACATAT-CGTTAGCAGAATAATCATA-----AACTATTCAAA--GTCATCCAAGTTCTTATC-AAATAT-----TCCAGCAA-TAAAAGAGATTTA-TCCTAGGAATCCT-------GGGTTAA---TAGAA----AAGACGTCTAATACTCCAACATCTGG----AG-------ACA-------AACACTGT-CG-C----CCATAACCCGA-ATAGA-----C--ATGATCAAC-TGTG--------AT------------AAAAATAATTTTGC-----GTAACAAAA--AA-TAATATGTTCTATTTCAA-T-TCA--TATGGG-GTTATA------------T---AAG---------ACACGCACACAGG----AGT-AGAATTATGAG
gi|1 : tggtagagaTTTTTTTTTTCAAAAGAAAAGTTTCAAGAGTTTGTGTTTTTTTGTGATAATGA--TTTTGG--AGAGATTTAATT----AAGCGTTGATA-C-G--GTT---AAAAAAAGT-----CTGAA-ATGTATCAGACTA------CTGTGC-TAGATATAA--GAAAATTTTTTTGCTG-T-GTG-AAAAAAT-GGCACTTT--AT--TCAACAATGGACTGACAAAT---GGTGTTAAAAGATT---AGA-GACCT-GGT-A----T---ATGATAT------GAAATAA------TAGATGCTTTAATGAA--TCAAGGG-A-----GTGCTTGG--TAACTCTAATAAC-TTTAT--AGAC-ATTTTC--ATGTGATAATCAAAAATA-CATCACAAATCAAcaaatacacatccctatatattaatcatgttgtggaggaggtgagactcacacacgtggaatatcacgaactttagactcatccgtgttttgtttcgattacacacagaatggaatggtgtaaaaggctgtagtagaagtatggggcaatgatagagattaacggtagtctggcagctatattatgcttaaaatggtcaatttcacccttaagatatatagatttcaattttttttttcaaaagaaaagtttcaagagtttgtgtttttttgtgataatgattttggagagatttaattaagcgttgatacggttaaaaaaagtctgaaatgtatcagactactgtgctagatataagaaaatttttttgctgtgtgaaaaaatggcactttattcaacaatggactgacaaatggtgttaaaagattagagacctggtatatgatatgaaataatagatgctttaatgaatcaagggagtgcttggtaactctaataactttatagacattttcatgtgataatcaaaaatacatcacaaatcaaaagatattattggattgaaagaaaggtagaagaataaaataatgaattaatgatgttcgtgcataatttattgtcaacatgtaattctaaatatttatcaaattttgaaaagaaaaggagtttaatagccccaatttaaaa
gi|17 : tggtagagagagatcacttattgatggttcatacattttcatttgatattccaatactatttgtgtaataaagaataaaacatggcatattatcaaggtttttagtcttgagagggtgtaacagggtgactctgacaccgtatcttttcatcattaagtagagctacgacaatttcattgaaaaaatgttctaattatcgaagggcaaatatgggggaaagagaatagagttgacaatattcagataatttctctcctagatggacacttgaacactcgctaagagaatcaatgtgtgttaattgcaagttctagtagtgtctcaggcctgaaattgaatatttcaaaatcacaagcagatttttcgttgaggatcgtgtagcttcaaatcgaggttcagctagaaatacctactgtgcctatgttgcaaatcaacgcgggctataaaggataatgtttgcacaactccgttttaatggaaacacaactttaccaaaacatatcgttagcagaataatcataaactattcaaagtcatccaagttcttatcaaatattccagcaataaaagagatttatcctaggaatcctgggttaatagaaaagacgtctaatactccaacatctggagacaaacactgtcgcccataacccgaatagacatgatcaactgtgataaaaataattttgcgtaacaaaaaataatatgttctatttcaattcatatggggttatataagacacgcacacaggagtagaattatgagcaaatacacatccctatatattaatcatgttgtggaggaggtgagactcacacacgtggaatatcacgaactttagactcatccgtgttttgtttcgattacacacagaatggaatggtgtaaaaggctgtagtagaagtatggggcaatgatagagattaacggtagtctggcagctatattatgcttaaaatggtcaatttcacccttaagatatatagatttcaaTT----GGT-AG--TTATGAGG--AGGGTGGAT----TAAACAT-CATTCAaagatattattggattgaaagaaaggtagaagaataaaataatgaattaatgatgttcgtgcataatttattgtcaacatgtaattctaaatatttatcaaattttgaaaagaaaaggagtttaatagccccaatttaaaa
gi|2 : TAGTG-TCA-TATCC-AAC-CGTATTAAGAAAACAGGTTCTGA-AT---GACATAATAA-GTGACA-CACAAAAGGG---TTTTAAAAAGGACGTT--CATA---GG-GGAAAAT-ACTC--GTTT---CCTA-TATG-ACCTTAT-TA-ACTA--TCTAAAG--AAAGA-AAAAC-GGT-TTGGATTA--CTA---CTTCTATT---AGACTTTGA----AAAAGTTTTTGACTCTT-GGAATGGGATTTTATTAG-CAAG--GCTC-TTAAATCATTC--AATTTTGGTGA-CTCACTTATTAAATGG-TTCCA--TACATTT--AT----TCTTCCAATACTAGTTGTGTAA-TAAA---TAA----TGGTCAT-TTTATCAAGGTT-CTTTAGTC-TTGAAAGGG-GT-TGTA-TAGACAGG-GTGATCCTCT-GGCACG----TATC----TTTTCATC-ATTACAG---TAGAGCT-ACTGGCAATTTCATTG-AAAGAAAA-TGT--TAA-T-A-TC-AAG--GGCATAACTATTGGTGGGAAGAGAATA-AGT-TA-GGACAAT-A-TGCA--GAT-ATT-CATTTC-TAC-TCC-TAGATGGA-ACT-GAACACTCTCT----AAGAGAATCAATGTGC--GTTA--TTGACAAG-TT-T--AGTAG-TG-TCTCA--GACCTGAAAC-TT-AATATT---CCAAAG-TCACAAGC-AG-TTT---------GGA--------TTG-GTAG--T-AAA-ACT--GGTTC-AG--C-AGAAA---C-T-CTGGGTC-C---TGATT--TGCAAAT-A-CAAT--GGGAT--CAA-GATAA-GTT--CA-AACTTC-TT------GGAATA-AAT-TTTACCAAAA-ATCT-TG-----AAGAT-ATCATA-----A------CATATAATTAT-TAA--TC----T-AAA-CT-----TTCAGCAATTAAAAG---GTTA-T--TAGG-ATCCT-------GGA-T-----TAGAA----GAGA--TCTAACA--CCA--ATTGGG----AAA--TT--ACAA-TTATTAAAACT-TTAG-CACTGCC-TAAGCTAATATACCGGTATTTTATTTTCAGC-TTTG--------CT------------GAATATACT----C-----G--ATGAAA--AT-TAAAATAT--TATTTAAA-T-TCA--TATGGG-GTTATAA---------GGTGAAAAG---------AAATACACTCATT----GGT-AG--TTATGAGG--AGGGTGGAT----TAAACAT-GATTCACTTGCCCTCTTTT-GTTTCATATATCAAACTA-AAATGGGTTAAAC-GATA-CTTGGCA-AAAATAAAGGAGTTTGGCAGCATTGCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTATTTATCAAAAGAAAAACTTCAAGAGTTTGTATTTTTTATTGATAATGA--TTTTGG--AGAGATGTTATTA---AAGCGTTGATA-CAG--GTT---AAAAAAAGTC----TTGAACATGTATCAGACTACCGTAGCTGTGCTTAGATATTA--GAAA---TTTTTGCTG-T-GTGAAAAAAATGGGCACTTT--AT--TCAA-AACGGACTGTC-AAT---GGTGTTAAAAGATT---AGAGGACCT-GTG-A----TCGGAAAATG-------GAAAT-AT-----TAGATGCTTTAATGAAATT-AAGGG-A-----GTGCTTGG--TA---CTAATAAC-TTTTT--AGACTATTTTC--ATGTGAT-ATCAAAAATACCCTTAAAAGTCAAt
gi|3 : C--GTTA--TTGATAAG-TT-TTGAGTTG-TC-TCTCG--CGCTT---ACGTTGAATCTT---TCAAAAGTCACAGGC-AA-TTT-T-------GGT--------TGG-G--G--CAAAA-ATTCAGGCTC-AGATC-TGAAA---A---CTTTGTT-G---TGAACGACGTGAAT-AATGGTTGGGAATGTTAA--AGAA-TTT--AA-GGCTTC-TT------TGAATATAACATTTAC-AAAA-ATCTGCG-----ATG---AGCATGGTTTCA------CGTA--ATTAC-TAT--TC----CGAAA-ATGTGAATTC--CATTTAATCA---TTTAGT--TTGC-ATCCTGGAAATAGGG-TGGATATAAAACCGCGAGA--CTTAACA--CCA----TAGGTTTAAAA--TTGGACAATTTATCAACAC--T-AGCCC-TTCC-CAAGCTCC-TTCCA-----CTTATTTTCCGCATGTGGGCGTGATCCACCA--------AAAAACAAT----TGGATAG--ATGATATCAA-CAGAACAT--T-TTTCAA-TATTATTTATGGGTGATACAA---------AGTAGAAAGGTTGAAAATAAATACAATTGTTTTCAGGTAAA--TTATGAGGCAAGGGGGGATGGGCTTAATATCGGTTCAGTTGTCTCCTTTCAATTTCTTACATCAAGTTAGAAATGGGTCAAACAGGTA-CCTGTCAGAAAATGAGGGAATTGGGCA
gi|3 : GTAATGTTGTTCTGGTAAGAGATGTT-TTATAGAAGTGGTAGCA-AAA--GCTTATAACAAAAGTTACTTTTGAATGTGTCTAGGAATAC-----TTACAATTAGACATAAAGGAAA---C-TTTGTTGATAGT--AAAAAATGGGAATTTTTAGT--ACAA-AATGG-TGGGA-AATAAAGGTATCAAAAaaactcttgtgtatgcatccaagtacttgtaaacctttaaattgtgtgattctatgttttatttgggcaaagaacaaatatgtgattattgcatggcaagttgtaatgttgttctggtaagagatgttttatagaagtggtagcaaaagcttataacaaaagttacttttgaatgtgtctaggaatacttacaattagacataaaggaaactttgttgatagtaaaaaatgggaatttttagtacaaaatggtgggaaataaaggtatcaaaacctttagacattggacttttttaaagtaaaacaagaaatggaactttttaaatgttttaa
gi|4 : cgttattgataagttttgagttgtctctcgcgcttacgttgaatctttcaaaagtcacaggcaattttggttggggcaaaaattcaggctcagatctgaaaactttgttgtgaacgacgtgaataatggttgggaatgttaaagaatttaaggcttctttgaatataacatttacaaaaatctgcgatgagcatggtttcacgtaattactattccgaaaatgtgaattccatttaatcatttagtttgcatcctggaaatagggtggatataaaaccgcgagacttaacaccataggtttaaaattggacaatttatcaacactagcccttcccaagctccttccacttattttccgcatgtgggcgtgatccaccaaaaaacaattggatagatgatatcaacagaacatttttcaatattatttatgggtgatacaaagtagaaaggttgaaaataaatacaattgttttcaggtaaattatgaggcaaggggggatgggcttaatatcggttcagttgtctcctttcaatttcttacatcaagttagaaatgggtcaaacaggtacctgtcagaaaatgagggaattgggcaaaactcttgtgtatgcatccaagtacttgtaaacctttaaattgtgtgattctatgttttatttgggcaaagaacaaatatgtgattattgcatggcaagttTGTAAA-GATAA-GTT--CA-AAGTTT-TT------GGAATA-AAT-TTTACCAAAA-ACCT-TG-----AGGAT-ATCATA-----A---------A--ATTAT-CAA--TC----C-AAA-AT-----TTCAGCAATTAAAAG---GTTA-T--TAGG-ATCCT-------GGG---G---TGAAA----GAGA--TTTAAAA--TCA--ATTAGG----AAAAATT--ACAA-TTATTAAAACT-T-AG-CA-TGCC-TAAGCTGA--TACC-----TTTATTTTCAGC-TTTG--------CCTGACCTTCCAAAGAATATGTT----G-----G--ATGAAAT-AAATAAAATAT--TTTTTCAAAT-TCA--TTTGAG-GTTATAAAACAGAAAAGGTAAAAAG---------AAATACACTCATT----GGT-AG--TTATGAGG--AGGGTGGAT----TAAACAT-GATTCACTTGTCTTCTTTT-GTTTCATATATCACACTA-ACATGGGTTAAAC-GATACCTTAGCA-AAAATAAAGGGATCTGGAAGCATTcctttagacattggacttttttaaagtaaaacaagaaatggaactttttaaatgttttaa
gi|4 : gTTTTATTTATCAAAAGAAAATCTTCAATAGTTTGTATTTTT-ATTGGAAATGAT-TTTTGG--AGAGATGTTATAA---AAGCATTGATA-CAA--GTT----AAAAAAGAC----CTGATCATGTATCACACTAT-----CTACACTCAGGTATTA--GAAA---TGTTT-CTG-T-GTG-AAAAAGTGGGCACGTT--ATAATCAA-AATGGATCGAC-AA-----------------C---AGAGGACCTGGTGTA----T--GGAAATAATTGCGTGCAAT-AAAGATCTAGAAGTTTTAATGAA--T-AAGGGCAGGGATGTGCTTGGTTTT---CTA--AACTTTTTT--AGACTATTTTCATATGTGAT-ATC-AAAATG-TCTCAAAAGTCAAtggtacaatgcatgttcaaccttaaaaatatagattttattttttatttatcaaaagaaaatcttcaatagtttgtatttttattggaaatgatttttggagagatgttataaaagcattgatacaagttaaaaaagacctgatcatgtatcacactatctacactcaggtattagaaatgtttctgtgtgaaaaagtgggcacgttataatcaaaatggatcgacaacagaggacctggtgtatggaaataattgcgtgcaataaagatctagaagttttaatgaataagggcagggatgtgcttggttttctaaacttttttagactattttcatatgtgatatcaaaatgtctcaaaagtcaaagagatattattacattgacaaga
gi|5 : gtgtaaagataagttcaaagtttttggaataaattttaccaaaaaccttgaggatatcataaaattatcaatccaaaatttcagcaattaaaaggttattaggatcctggggtgaaagagatttaaaatcaattaggaaaaattacaattattaaaacttagcatgcctaagctgatacctttattttcagctttgcctgaccttccaaagaatatgttggatgaaataaataaaatattttttcaaattcatttgaggttataaaacagaaaaggtaaaaagaaatacactcattggtagttatgaggagggtggattaaacatgattcacttgtcttcttttgtttcatatatcacactaacatgggttaaacgataccttagcaaaaataaagggatctggaagcatttggtacaatgcatgttcaaccttaaaaatatagattttattTAGTGGCCAGTATCCCAACGCGTATTTAAAAA---GGTTCTCACACTTGGACATAATAATGTGACAACACAAAAGGGCTGTTCTATAAAGGACGTTTTCATACGTGGCAGAGAATTACTCCAGTTTTTCCCTAATATGGACCTTAAATACACTACTTCTAAAGTCAAAGACAAAACCAGTATTGGATTAAACTATCTCCTCTATTCTAGGACTTTGATGACAAAGGCTTTTGACTCTTTGGAATGGATTTTTATTAGGCAAGCCGTTCCTTAACTCATTTCAAATGTTGGTGAGCTCACTTATTAAATGGTTTCCATTTACATTTT-ATCTC-TCTCCCAATACTAG-TGTGTAAGT--A-AAT-A--CATGGTCAT-TT-ATCAAGGTTGCTTTAGTCATTGAGAGGGCGTATGTAGGA-ACAGGAGTGATCCTCTGGGCACGGCGTTATCCTCTCTTTCATCGATTACAGTACTAGAGCTAACTGGCAATTTCATTGAAAAGAAAAATGA-TTAACT-ACTC-AAGAAGGCATAT-CTTTGG-GGGAAGAGAATAAAGTATAGGGACAATCACTGCGACGATGATTCCATTTCTTACCTCCTTAGATGGA-ACTCGAACAC-CTCTTAACGAGAGATCCAATGTGCTGATTATCTTGACAAGATT-T--AGTAGCTGCTCTCATCGGCCTGAA---CT-AATATCCTATCAAAA-TCACAAGCTAG-TCTAT-------GGAAAACTGGTTAG-GT-G--TTAAACACT-GGCCTCAAG--C-AGAAA---CAT-CT-TGTT-GGACTGATagagatattattacattgacaaga
gi|8 : TGCTATTA---AAGCA---ATAGCAAACGTT---AAGAAAAGTT----CTGAACATGTATTAGACTAC-----TTGAACTTAGATATTA--GAAA---TGTTTGCTG-T-GTA-AAAAAATGGGAAATTT--CT--TCTA-AATGGGTTGGT-AAT---GGTGTTAAA--ATCTAAAGAGGTCC---CG-ATCTCT--GAAAACA-------GAAAT-A--------------------------AAAGA-A-----GTGCTTGG--CA---ATAATA---TTTTTAAAGATTATTTTC--ATGTAGT-ATCAAATATACCCTAAAAAGTCAA
10 sequences could not be aligned to this reference sequence:
Unaligned ( gi|6 ): TAGGAATTGAGAGCCCCAACACTAAAAACAAAATAAGTGGGGAAACTTTATTAGATGAATCCATATCTGATAAAGACTGGAGATTTTATTTTGTAAATGCATCATAATGTACAAAAGGATACAAAATGAATTTATTTTCAATACCGAATCTGATGAATTATATTACTACCAACTCTTTTCTTCATAAAATTAAAATTTCAGATAATATTTGCGTATTTTTTTGTACTGTGAAGCAGAAACAATAACTCGCATATTTTATGATTGTGTACACATCAACTTATTTTGAATGATTTTTGTGCAGTGGTTTAATGTATAAGATATCAAAAAGAAAATTGTTTTACTCGGTAATAATGAAGAAAAGCTGTTAGAAAATTGTCTTTTATTGGTTGCAGAAAGTGTATTATTTTTTTAAAATCACAATTTAAGGCCTTAGCCCAAAAATTTTCCGAGGCAGTGACTTTATTTAAGTATTTAGAAATAGGAATTACTGTGAAAATGTATTCAAATGTAAATCCAAAATACTTGCAAAGGGCAATATATGATATTGTACAAAACAAGTAAGAATGGAAAACCAGGTATATATAAG
Unaligned ( gi|7 ): AAAAAGTGGGAAACTTATATAGATAACCTTATCTGACAAAGACTGGAAATTTTATTTTTAAATGTTTTCGTTATGTACGAAGGATACAAAAATAATTTATTATTCAAATACGCGAAATATCTGATGAACTATAATTGCTACCAACTCCTTATCATTTAAAATCAAACTTTCTGATAGAAGATTTTTGTGTTACTTTGTTACACATCCTGAGCAGAAACAATTAACTTGTACCATACTTCTCACATGATTTGATGTGGGATAGGTCCAATCAAGAGTGTTATTTGGAGATATGACTTTATAGGTGAGCTGGAATTTAATGATAATTCTGAAAAACATGATTAGATTAAATACATCAAAAAGCAATTAATAACTTGTGTTGGTGTATATACTTTTGTTGTAATCA
Unaligned ( gi|9 ): TTACATTGCTATAACTCGTTCCTTCACAAACTTAAACTTGTAGAAAATGACAAATGTTCTCTTTGTAAATGTGAAAGAGAAACAATTTCTCATATATTTATGATTGTAATATCACCCTAGCCTTTTGGGGAGATTTTGTGAAATGGAACAGTGCTGTTGAAAAGGATTATAAGATTTCGAAAAGAATTGTATTACTTGGANNNNNNNNNNNNNNNNNNNNNNNNNAATATATCTTTATTA
Unaligned ( gi|10 ): AAGAGAGATATATTATTGCATTGAAAGAAGGTAAATAGATGCAAACGATGAACATACTAAAAATAATAATTATTGTCAACATGTAATATGAAATATTTATATCAAATTTTTAAAAGAAAGGAGATTTATAGCCCAACATAAA
Unaligned ( gi|11 ): AGAGAGATATATTATTGCATTGAAAGAAGGTAAAATAGATGCAAACGATGAACATACTAAAAAATAATAATTATTGTCAACATGTAATATGAATATTTATATCAAATTTTTAAAAGAAAGGAGATATACCCCAACATAAAA
Unaligned ( gi|12 ): TATTATTGCATTGAAAGAAGGTAAAATAGATGCAAACGATGAACATACTAAAAATAATAATTATTGTCAACATGTAATATGAAATATTTATATCAAATTTTAAAAGAAAGGAGATTATAGCCCCAACATAAA
Unaligned ( gi|13 ): AGCTAGGATCAGAATAATATGAACATTCTGAAATATATCTGTTGTCCCATAAAAATGTTAGTGAAATTGTAGATACGAAATATTTATATAAACT
Unaligned ( gi|14 ): GAGATATTATTGGATTGAAAGAAGGTAGGATAGATAAAAATAATGAAGTACGGAATGTGTCGTCAACATGTAATTCGAAATATTTATATCAA
Unaligned ( gi|15 ): AAGGATACAAAAATAATTTATTTTCAATAACGAATACTGATTAATTATATTGCTACCAACTCCTTTCTTC
Unaligned ( gi|16 ): TGAAAATGTATTTGAATGTAAATCTAAAATACTAAGCAAATGGGCAAATAT