lowQualScore : 22222222222222222
lowQualScore : 1 11111111 1111 1111111 1 11111111 2 11 1111111 111111 444444444444 1111111111 222 1111 11 1 11111111111111 1 2222222 1111 1 22222222222 111 1 55555 2222 333333 22 777777777777 222 2 333333 222 44444444444444444 2 2 1 22 2 2 2 22222 1 2
lowQualScore : 99 3 3 3 0 3 3 555 777 11111111 2 6 3 4444 2222 0 7777777 3 5 3 3 9 33333333 8 99 3 3 00 8888 8888888 111111 5 3 9999 1 333333333333 3333333333 0 888 222 3 4444 33 0 55555555555555 0 5555555 4444 0 55555555555 999 3 00000 9999 77 4 6 333333 88 77 333333333333 111 0 777777 444 33333333333333333 0 0 5 4 2 77 0 4 0 6 0 3 88888 5 0 88
lowQualScore : .. . . . . . . ... ... ........ . . . .... .... . ....... . . . . . ........ . .. . . .. .... ....... ...... . . .... . ............ .......... . ... ... . .... .. . .............. . ....... .... . ........... ... . ..... .... .. . . ...... .. .. ............ ... . ...... ... ................. . . . . . .. . . . . . . ..... . . ..
lowQualScore : 11 6 6 3 0 3 3 888 111 22222222 6 2 1 3333 1111 4 8888888 3 0 3 3 6 44444444 6 66 6 6 99 5555 4444444 555555 0 4 0000 4 000000000000 2222222222 7 777 777 2 2222 88 0 88888888888888 0 8888888 8888 0 88888888888 000 3 00000 0000 00 0 0 000000 00 55 000000000000 000 0 000000 000 55555555555555555 0 0 5 0 5 55 0 0 0 0 0 0 55555 0 0 00
consensus : ATTTATT-NCTAATT-CAGA-GCCCAA-ACAGGGCAAAA-GG-AGCATAA-CA---TACATCAA--------GAAAGG-AAACC-AAAA-G--A---CAGAGCTA--A---CAT-AAAGTGAGACAT-A-ATGACA--NA----CATTGA-AAAN-AAG-ACAAAATTG-TATT-GCAC----AA-----G-AGGG--A---AGGA-GTCATACATTGCTCAAATT-CG-------A-CAAG-AT--AA---GAATTAAA-A-TAGG--TTAAGGTAAA----TTATCG--TGA-AGAAATCTA-CCCAAGACGTT-CATAA-T--TTCAAT-A--TC-TTCACAATTTAAAA---TCCAAAAAAAGT--TTTT-CTTTATCTGGACAGTTAAANCCAATTNNATNTATCACTAGCTTTTGGGNNTGGTTACAAGTCTAAAT-GTTTCT-TCTTTGTTGACTAAATTTGTCACATTGAATAAGGTAAGTGAATATATTTCATCTTCCA--------------CTACACTTTCTGTGCAAATTTATTGCAANTTCTTTNACAATCCTGGGNGATATTGTAATATCTAACCAGTTCTCNATTAAAAGTCTGTGTTGATATGATGTCCTGAAATCTACAANNTGATCTTCTATAT
Reference ( gi|1 ) : ATTTATT-GCTAATT-CAGA-GCCCAA-ACAGGGCAAAA-GG-AGCATAA-CA---TACATTAA--------GAAAAG-AAACC-AAAA-G--A---TAGAGCTT--A---CAT-AAAGTGCGACAT-A-ACGACA--AA----CATTGACAAAA-AAG-ACAAAATTG-TATC-GCAC----AA-----G-AGGG--A---AGGA-GTCATACATTGCTCAAATT-CG-------ACCAAG-AT--AA---GAATTGAA-A-TAGG--TTAAGGTAAA----TTATCA--TGA-AGAAAGCTA-CCCAAGGCATT-CATGA-T--TTCAAT-A--TC-TTCACAATTTAGAA---TCCAAAAAAAGC--TTTT-CTTTATC-----AGTTAAATT--ATTAAATTTGT-A-TA-CTTTTGAAATT--TTACAAGTCTAAATAGTTTCTCTCTTTGTTTAATAAATTTGTCACATTGAATAAGG-AAGTGA--AT--TTCGTCTTCCAAGTAGAAAGTGGTGCTATATTTTTTGTGC-AATTT-TTGCAAATTCTTTCAT--TCCT-GGAGATATTGTAATATCT-ATCAG-TCTCAATTAAAAGTCTGTG-TG--ATGATGTCCTG-AATCTACAAATTGATCTTCTATATTAGTAAGTGTAGTCAACATTAATCATCTACAAAAATATTTAGTGTTGAATTCCATAATTTTGTTAAATGTTATATATTTAAAAAATGCAAGTGAAGAG
gi|4 : ATTTATT-GCTAATC-CAGA-GCCCAA-ACAGGGCAAAA-GG-AGCATAA-CA---TACATTAA--------GAAATG-AAACC-AAAA-G--A---TAGAGCTT--A---CAT-AAAGTGAGACAT-A-AAGACA--AA----CATTGA-AGAA-AAG-ACAAAATTG-TATT-GCAC----AATTGAAG-AGGG--A---AGGA-GTCTTACATTGCTCAAATT-CG-------ACCAAG-AT--AA---AAATTAAA-A-TAGG--TTAAGGTAAA----TTAGCA--TGA-AGAAAGCTA-CCCAAGACGTT-CATAA-T--TTCAAT-A--TC-TTCACAATTTAAAA---TCCAAAA
gi|10 : atagATTTATT-ACTAATT-CAGA-GCCCAA-ACAGGGCAAAA-GTTAGCATAA-CA---TACATCAA--------GAAAAGGAAACC-AAAA-G--A---CAGAGCTA--A---CAT-AAAGTGAGCCAT-A-GTAAC-----------TTTAGAGAT-GAG-ACAAAATTG-TATT-GCAT----AA-----G-AGGG--A---AGGG-GTCCTACATTGCTCAAATT------------CAAG-GT--AA---GAAT
gi|3 : agaatagATTTATT-TCATATT-CAGA-GTCAAA-ACAGGGCTTAA-GG-AGCACAC-CA---TACCTAAAAACATACGGAAAAA-TAACC-AAAA-G--A---AAGAGTCA--G---TAT-AAAATGAGACAT-A-ATGATA--TA----TATTGA------------------G-TATA-GGAC----AAA----G-AAGG--A---GTGA-ATCATA--TTGCTAAAATT-CA-------AGTAAACATTAAA---AAGCTGAA-T-TAAAACTTAAGGTAAA----TCATCG--TGA-AGAAATCTA-CCAAAGA-GTT-CATCA-A--TTCGAT-A--TC-TTCACAATTTAAAA---TCC-AAAAACGT--TTTT-C
gi|7 : gaaatagATTTATT-ACTAATT-CAGA-GCCCAA-ACAGGGCAAAA-GT-AGTATAC-CATAGTACATCAA--------GAAAGG-AAACCAAAAA-G--A---CAGAGCTA--T---CATAAAAGTGAGCCAT-ATA----A--GA----CTTTGAGAATG-AGA-ACAAAATTG-TATT-GCAT----AA-----G-AGGGTTC---AGGA-GTCATACATTGTTCAAATT------------CAAG-TT--AA---GAA
gi|6 : agaatagATTTATT-TCTAATT-CATA-GCCCAA-ACAGGGCAAAA--G-AGCATTG-CA---TACATCAG--------GAAAGA-AAACC-ATAA----A---CA-AGCAA--A---CAT-AAAGTGAGACAT-A-ATTACA--CA----CATTG--AAAT-TAGCACAAAATT--TATT-AGAC----AA-------AGAG--G---AGGA-GTT-T---TTGTGTAAATT--G---------CAAA-AT--AA---AAATT
gi|15 : atagtatATCTATT-TCTAATC-CAGA-GGCCAA-ACAGGACACAACAG-AGCAAAA-CA---AATATTAA--------GAAAGA-AAACC-AAAA-A--A---tttagtaattaagaattaatttgagaggatattt
gi|2 : acagtagaatagTTTATTTGCTAATTTCAGA-GCCCAA-ACAGGGCAAAAAGG-AGCATAG-CA---TACATTAA--------GAAAAG-AAACC-AAAA-G--A----AGAACTT--AAACCAT-AAAGTGAGAACTAA-ATGACA--AA----CTTTGA-AAAA-AAG-ACAAAACTGATATTGGCAC----AA-----GAAAGG--A---GGGATGTCATACA-TGCTCAAATTCCG-------ACCAAG-AT--A-----AATCGAA-ATTAGG--TTTAGG-AAA----TTATCA--TTG-AGAGA-------------ATT-CA-GATT--TTCAAT-AACTC-TTCACAATTT-------T---AAAAAAAC--TTTT-CTTTATC-----AGTTAAATC--ATTTAATTTAT-ACTA-CTTTTGGGAATGGTTACAAGTCT-AAT-GTTT---TCTTTGTTGACTAAATTTGTCACATTGAATAAGGTAAGTGAATAT--TTCA--TTCCA--------------C--TACTTTTTGTGCAAATTTATTGC-AATTCTTTCATAATCCTGGGAGATATTGTAATATCTAACCAGTTCTCAATTAAAAGTCTGTGTTGATATGAT-TCCTGAAATCTACAATATGATCTTCTATATataaatagaaaataaaaaaaaaaa
gi|13 : aaatatattTTTATT-GCTAATT-CAGA-GCCCAAGACAGGGCAAAAAGG-AGCATAAACA---TACATTAA--------GAAAAG-AAA-------------------GCTT--AA--CAT-AAAGTGGAACTA-A-ATGACA--AA----CTTTGA-AAAA-AAG-ACAAAATTG-TATT-GCAC----AA-----G-AGatttgtaattattaatt
gi|12 : aaatagatTTATT-TCTAATT-TAGA-GCCCAA-ACAGCTCATAC-GG-AGCATAA-CA---TAGA-GAA--------GAAAAGAAAACC-AAAA-GACA---TAGAATTTTGA---CAT-AAAATAAGATAT-A-ATGACA--TA----CAT
gi|14 : agaataaagaaaaattttaCTAATT-CAGA-GCTCAA-ACTGGGCAAAA-GG-AGAATAA-C----------AA--------GAAAGG-AAACC-AAAA-G--A---CAGAGCTA--A---CAT----GTGAGACAT-A-GTAACATGTA----CATTGA-AAAC-GAG-ACAGAATTG-TATgtacgtataattgagatataagacaaa
gi|5 : AATT-CTGAAGCTCAA-ACTGGGCAATA-GA-AGCATAA-CA---T------A--------GGACTG--AACT-AAAA-G--A---CAGAACTA--A---CAT--AAGTGAGGCAT-A-ATGACA--CACATGCATTGA-GAAT-AGG-ACAAAATTG-CATT-GTAC----AA-----GAAGGG--ATCGAGGA-ATCAT--ATTGCTAAAATT-CAAATAAACATTAAG-A---AAGCTGAATTAAA-A-CAGC--TTGAGGTAAA----ATATt
gi|8 : ttctaCCAA-GCAGGACAAAA-GG-AGCAT--------TAC--------------------AAGCC-AAAA-G--A---CAGAGCTA--G---CAT-AAAGTGAGGCAT-A-ATAACA--CA----CATTGA-GAAC-AGG-ACAAAATTG-TATT-GTACAATTAA-----G-AAGG--A---AGGA-GACATAC--TGCTAAAATT-CA-------AATAAG-CT-------GAATTAAA-A-CAA----CAAGGTAAA----TTgcgaaataagtacaaaaca
gi|16 : aatataatagatttattAA--------GAAAGA-GAACC-AAAAAG--ACGCTA-AGCTA--A---CAT-AAATTGAGACAC-A-ATGACA--CA----CATT--CAGAACAGG-ACAAAATTG-TATT-GCAC----AA-----t
gi|9 : ---GAATTAAACA-TCG---TTAAGGGGAAGACTCTACCGAGTGAGAGAAATCTAGCCCAAGGCGCTACAGAA-TAATTCAATTA--TCCTTCACAATTTAAAAAGTCCCAAGAAAAGTAGTTTCGCTTTATCTGGACAGTTAAAGTCAATTACATATATCA-TAGCTTTTGAATTT--TTACAAGTCTA-----TTTCTt
gi|11 : AAATTTGTCACATTGAATAAGG-AAGTGA--ATATTTCATCTTTCA--------------CTACATTTTCTGTGC-AATTT-TTGCAATTTCTTTAAC--TTCT-GATAATATTGTAATATCT-ACCAG-TCTCCATTAAAAGTCTGTG-TG--ATGATGTTCTG-AATCTACAAATTGATCTTCTATAT
Alignments
lowQualScore : 11111111 11111111111 11111 44444444444444 222222 11111 1111 1 11 11 111 11 1 55555 3333 444444 33 22222 1 2 33333 77777777777777 11 2 2 1 22222 2 2 2 33333 2
lowQualScore : 44 3 3 3 3 9 3 3 555 66 00000000 2 555 2 2 0 44 6666 3 3 44 3 3 555 44444444444 6666 3 3 1 3 3 3 66666 8 999999 4 2 444 0 66666666666666 777 555555 5 11111 1 2222 99 6 0 8 66 8 0 11 8 11 8 0 444 5 33 0 00000 2222 22 1 333333 3333 00 66666 7 3 2 2 3 66666 7 88888888888888 11 0 0 3 3 4 33333 3 1 3 3 1 55555 6 3 22
lowQualScore : .. . . . . . . . ... .. ........ . ... . . . .. .... . . .. . . ... ........... .... . . . . . . ..... . ...... . . ... . .............. ... ...... . ..... . .... .. . . . .. . . .. . .. . . ... . .. . ..... .... .. . ...... .... .. ..... . . . . . ..... . .............. .. . . . . . ..... . . . . . ..... . . ..
lowQualScore : 33 3 3 3 1 2 1 1 444 11 44444444 9 000 9 9 2 22 5555 1 1 22 1 1 222 66666666666 5555 1 1 0 1 3 3 88888 0 222222 4 0 888 1 00000000000000 888 555555 7 99999 4 1111 22 7 4 0 88 0 6 00 0 00 0 8 000 6 88 0 77777 0000 00 0 000000 3333 00 00000 3 3 5 5 7 00000 3 33333333333333 00 7 7 7 7 0 33333 3 0 7 7 0 33333 7 7 00
consensus : ATTTATTN-CTAA-TT-CAGA-GCCCAA-ACAGGGCAAAA-GG-AGCATAA-CA---TACATTAA--------GAAA-GGA---AACC-AAAA-GACA--GAG----C-T-AA--CAT-AAAGTGAGACAT-AATGACA--NAC-----------AT----TGA-GA-ANAAG-ACAAAATTG-TATT-GCAC-----AAG-AGGG--A---AGGA-GTCATACATTGCTCAAATT-CGA--------C-AAGA---TAA------GAATTAAA-A-CAGGTTAAGGTAAA----TTATCG--TGA-AGAAANCTA-CCCAAGGCGTT-CATAAT--TTCAAT-A--TC-TTCACAATTTAAAA---TCCAAAAAAAGC--TTTT-CTTTAT-----CAGTTAAATT--ATTAAATTTAT-A-TA-CTTTTGAAATT--TTACAAGTCTAAAT-GTTTCT-TCTTTGTTNANTAAATTTGTCACATTGAATAAGG-AAGTGA--ATATTTCGTCTTCCA--------------CTACATTTTTTGTGC-AATTT-TTGCAA-TTCTTT-ACA-TCCT-GGAGATATTGTAATATCT-ACCAG-TCTCAATTAAAAGTCTGTG-TG--ATGATGTCCTG-AATCTACAAATTGATCTTCTATAT
Reference ( family-8175 ) : ATTTATTN-CTAA-TT-CAGA-GCCCAA-ACAGGGCAAAA-GG-AGCATAA-CA---TACATCAA--------GAAA-GGA---AACC-AAAA-GACA--GAG----C-T-AA--CAT-AAAGTGAGACAT-AATGACA--NAC-----------AT----TGA-AA-ANAAG-ACAAAATTG-TATT-GCAC-----AAG-AGGG--A---AGGA-GTCATACATTGCTCAAATT-CGA--------C-AAGA---TAA------GAATTAAA-A-TAGGTTAAGGTAAA----TTATCG--TGA-AGAAATCTA-CCCAAGACGTT-CATAAT--TTCAAT-A--TC-TTCACAATTTAAAA---TCCAAAAAAAGT--TTTT-CTTTATCTGGACAGTTAAANCCAATTNNATNTATCACTAGCTTTTGGGNNTGGTTACAAGTCTAAAT-GTTTCT-TCTTTGTTGACTAAATTTGTCACATTGAATAAGGTAAGTGAATATATTTCATCTTCCA--------------CTACACTTTCTGTGCAAATTTATTGCAANTTCTTTNACAATCCTGGGNGATATTGTAATATCTAACCAGTTCTCNATTAAAAGTCTGTGTTGATATGATGTCCTGAAATCTACAANNTGATCTTCTATAT
gi|1 : ATTTATTG-CTAA-TT-CAGA-GCCCAA-ACAGGGCAAAA-GG-AGCATAA-CA---TACATTAA--------GAAA-AGA---AACC-AAAA-GATA--GAG----C-T-TA--CAT-AAAGTGCGACAT-AACGACA--AAC-----------AT----TGACAA-AAAAG-ACAAAATTG-TATC-GCAC-----AAG-AGGG--A---AGGA-GTCATACATTGCTCAAATT-CGA--------CCAAGA---TAA------GAATTGAA-A-TAGGTTAAGGTAAA----TTATCA--TGA-AGAAAGCTA-CCCAAGGCATT-CATGAT--TTCAAT-A--TC-TTCACAATTTAGAA---TCCAAAAAAAGC--TTTT-CTTTAT-----CAGTTAAATT--ATTAAATTTGT-A-TA-CTTTTGAAATT--TTACAAGTCTAAATAGTTTCTCTCTTTGTTTAATAAATTTGTCACATTGAATAAGG-AAGTGA----ATTTCGTCTTCCAAGTAGAAAGTGGTGCTATATTTTTTGTGC-AATTT-TTGCAAATTCTTT--CATTCCT-GGAGATATTGTAATATCT-ATCAG-TCTCAATTAAAAGTCTGTG-TG--ATGATGTCCTG-AATCTACAAATTGATCTTCTATAT
gi|10 : ATTTATTA-CTAA-TT-CAGA-GCCCAA-ACAGGGCAAAA-GTTAGCATAA-CA---TACATCAA--------GAAAAGGA---AACC-AAAA-GACA--GAG----C-T-AA--CAT-AAAGTGAGCCAT-AGT------AAC-----------TT----TAG-AG-ATGAG-ACAAAATTG-TATT-GCAT-----AAG-AGGG--A---AGGG-GTCCTACATTGCTCAAATT------------C-AAGG---TAA------GAATtagtaagtgtagtcaacattaatcatctacaaaaatatttagtgttgaattccataattttgttaaatgttatatatttaaaaaatgcaagtgaagag
gi|11 : agaatagAAATTTGTCACATTGAATAAGG-AAGTGAATAT--TTCATCTTTCA--------------CTACATTTTCTGTGC-AATTT-TTGCAATTTCTTTAAC--TTCT-GATAATATTGTAATATCT-ACCAG-TCTCCATTAAAAGTCTGTG-TG--ATGATGTTCTG-AATCTACAAATTGATCTTCTATAT
gi|12 : TTATTT-CTAA-TT-TAGA-GCCCAA-ACAGCTCATAC-GG-AGCATAA-CA---TAGAGAAG--------AAAA-GAA---AACC-AAAA-GACA--TAGAATTT-T-GA--CAT-AAAATAAGATAT-AATGACA--TACATGTACGTATAAT----TGA-GATATAAG-ACAAAatgcagattactagt
gi|13 : agaataaagaaaaattttaTTTATTG-CTAA-TT-CAGA-GCCCAAGACAGGGCAAAAAGG-AGCATAAACA---TACATTAA--------GAAA-AGA---AA----------------G----C-TTAA--CAT-AAAGTGGAACTA-AATGACA--AAC-----------TT----TGA-AA-AAAAG-ACAAAATTG-TATT-GCAC-----AAG-AG
gi|14 : aaatagat-CTAA-TT-CAGA-GCTCAA-ACTGGGCAAAA-GG-AGAATAA-CA----------A--------GAAA-GGA---AACC-AAAA-GACA--GAG----C-T-AA--CAT----GTGAGACAT-AGTAACATGTAC-----------AT----TGA-AA-ACGAG-ACAGAATTG-TATT-
gi|15 : ATCTATTT-CTAA-TC-CAGA-GGCCAA-ACAGGACACAACAG-AGCAAAA-CA---AATATTAA--------GAAA-GAA---AACC-AAAA-AA
gi|16 : acagtagaatagAA--------GAAA-GAG---AACC-AAAAAGACGCTAAG----C-T-AA--CAT-AAATTGAGACAC-AATGACA--CAC-----------AT----TCA-GA-ACAGG-ACAAAATTG-TATT-GCAC-----AAataaatagaaaataaaaaaaaaaa
gi|2 : TTTATTTGCTAA-TTTCAGA-GCCCAA-ACAGGGCAAAAAGG-AGCATAG-CA---TACATTAA--------GAAA-AGA---AACC-AAAA-GA-A--GAA----CTT-AAACCAT-AAAGTGAGAACTAAATGACA--AAC-----------TT----TGA-AA-AAAAG-ACAAAACTGATATTGGCAC-----AAGAAAGG--A---GGGATGTCATACA-TGCTCAAATTCCGAC-------C-AAGA---TA--------AATCGAA-ATTAGGTTTAGG-AAA----TTATCA--TTG-AGAGA-------------ATT-CAGATT--TTCAAT-AACTC-TTCACAATTT-------T---AAAAAAAC--TTTT-CTTTAT-----CAGTTAAATC--ATTTAATTTAT-ACTA-CTTTTGGGAATGGTTACAAGTCT-AAT-GTT--T-TCTTTGTTGACTAAATTTGTCACATTGAATAAGGTAAGTGA--ATATTTCA--TTCCA--------------CT--ACTTTTTGTGCAAATTTATTGCAA-TTCTTTCATAATCCTGGGAGATATTGTAATATCTAACCAGTTCTCAATTAAAAGTCTGTGTTGATATGAT-TCCTGAAATCTACAATATGATCTTCTATATt
gi|3 : aaatatattATTTATTT-CATA-TT-CAGA-GTCAAA-ACAGGGCTTAA-GG-AGCACAC-CA---TACCTAAAAACATACGGAAA-AAT---AACC-AAAA-GAAA--GAG----T-C-AG--TAT-AAAATGAGACAT-AATGATA--TAT-----------AT----TGA-GT-ATAGG-ACAAA---------------------G-AAGG--A---GTGA-ATCATA--TTGCTAAAATT-CAA--------G-TAAACATTAAAAAGCTGAATTAAA-A-C---TTAAGGTAAA----TCATCG--TGA-AGAAATCTA-CCAAAGA-GTT-CATCAA--TTCGAT-A--TC-TTCACAATTTAAAA---TCC-AAAAACGT--TTTT-Catttgtaattattaatt
gi|4 : gaaatagATTTATTG-CTAA-TC-CAGA-GCCCAA-ACAGGGCAAAA-GG-AGCATAA-CA---TACATTAA--------GAAA-TGA---AACC-AAAA-GATA--GAG----C-T-TA--CAT-AAAGTGAGACAT-AAAGACA--AAC-----------AT----TGA-AG-AAAAG-ACAAAATTG-TATT-GCACAATTGAAG-AGGG--A---AGGA-GTCTTACATTGCTCAAATT-CGAC-------C-AAGA---TAA------AAATTAAA-A-TAGGTTAAGGTAAA----TTAGCA--TGA-AGAAAGCTA-CCCAAGACGTT-CATAAT--TTCAAT-A--TC-TTCACAATTTAAAA---TCCAAAA
gi|5 : atagTT-CTAAATT-CTGAAGCTCAA-ACTGGGCAATA-GA-AGCATAA-CA---TA-------------------GGACTGAACT-AAAA-GACA--GAA----C-T-AA--CAT-AA-GTGAGGCAT-AATGACA--CAC-----------ATGCATTGA-GA-ATAGG-ACAAAATTG-CATT-GTAC-----AAGAAGGG--ATCGAGGA-ATCAT--ATTGCTAAAATT-CAAATAAACATT-AAGA----AAGCT---GAATTAAA-A-CAGCTTGAGGTAAA----ATAT-G--CGA-A
gi|6 : ATTTATTT-CTAA-TT-CATA-GCCCAA-ACAGGGCAAAA-G--AGCATTG-CA---TACATCAG--------GAAA-GAA---AACC-ATAA--ACA---AG----C-A-AA--CAT-AAAGTGAGACAT-AATTACA--CAC-----------AT----TGA-AA-TTAGC-ACAAAATT--TATT-AGAC-----AA--AGAG--G---AGGA-GTT-T---TTGTGTAAATT---G--------C-AAAA---TAA------AAATTataagtacaaaaca
gi|7 : atagtatATTTATTA-CTAA-TT-CAGA-GCCCAA-ACAGGGCAAAA-GT-AGTATAC-CATAGTACATCAA--------GAAA-GGA---AACCAAAAA-GACA--GAG----C-T-AT--CATAAAAGTGAGCCAT--ATA--A--GAC-----------TT----TGA-GA-ATGAGAACAAAATTG-TATT-GCAT-----AAG-AGGGTTC---AGGA-GTCATACATTGTTCAAATT------------C-AAGT---TAA------GAAtttagtaattaagaattaatttgagaggatattt
gi|8 : agaatagCCAA-GCAGGACAAAA-GG-AGCAT--------TACA-----------------------AGCC-AAAA-GACA--GAG----C-T-AG--CAT-AAAGTGAGGCAT-AATAACA--CAC-----------AT----TGA-GA-ACAGG-ACAAAATTG-TATT-GTACAATT-AAG-AAGG--A---AGGA-GACATAC--TGCTAAAATT-C-------------AAA---TAAGCT---GAATTAAA-A-CAA--CAAGGTAAA----TT
gi|9 : aatataatagatttatt------GAATTAAACA-TCG-TTAAGGGGAAGACTCTACCGAGTGAGAGAAATCTAGCCCAAGGCGCTACAGAATAATTCAATTA--TCCTTCACAATTTAAAAAGTCCCAAGAAAAGTAGTTTCGCTTTATCTGGACAGTTAAAGTCAATTACATATATCA-TAGCTTTTGAATTT--TTACAAGTCTA-----TTTCT-t
Alignments
lowQualScore : 11111111 11111111111 11111 44444444444444 222222 11 1111 11 11 111 11 1 33333 11 111 1 11 22222 1 1 77777777777777 1 1 1 1 555555 1 1 1 1 11 1
lowQualScore : 44 3 3 3 3 9 3 3 555 44 00000000 2 555 2 2 0 44 6666 3 3 44 3 3 666 44444444444 6666 3 6 1 3 3 3 66666 8 999999 4 2 444 0 66666666666666 777 555555 5 00 1 2222 99 6 1 8 66 8 0 11 8 11 8 0 444 5 33 0 33333 88 777 3 88 66666 7 3 1 1 3 7 88 88888888888888 7 3 3 3 3 000000 3 3 3 3 6 88 3
lowQualScore : .. . . . . . . . ... .. ........ . ... . . . .. .... . . .. . . ... ........... .... . . . . . . ..... . ...... . . ... . .............. ... ...... . .. . .... .. . . . .. . . .. . .. . . ... . .. . ..... .. ... . .. ..... . . . . . . .. .............. . . . . . ...... . . . . . .. .
lowQualScore : 33 3 3 3 1 2 1 1 444 33 44444444 9 000 9 9 2 22 5555 1 1 22 1 1 333 66666666666 5555 1 2 0 1 3 3 88888 0 222222 4 0 888 1 00000000000000 888 555555 7 00 4 1111 22 7 0 0 44 0 6 00 0 00 0 8 000 6 88 0 33333 33 777 3 33 00000 3 3 0 0 3 3 00 33333333333333 3 3 3 3 3 000000 3 3 3 3 7 33 3
consensus : ATTTATTN-CTAA-TT-CAGA-GCCCAA-ACAGGGCAAAA-GG-AGCATAA-CA---TACATTAA--------GAAA-GGA---AACC-AAAA-GACA--GAG----C-T-AA--CAT-AAAGTGAGACAT-AATGACA--NAC-----------AT----TGA-GA-ANAAG-ACAAAATTG-TATT-GCAC-----AAG-AGGG--A---AGGA-GTCATACATTGCTCAAATT-CGA--------C-AAGA---TAA------GAATTAAAA-CAG-GTTAAGGTAAA----TTATCG--TGA-AGAAANCTA-CCCAAGGCGTT-CATAAT--TTCAAT-A--TC-TTCACAATTTAAAA---TCCAAAAAAAGC--TTTT-CTTTATC-----AGTTAAATT--ATTAAATTTAT-A-TA-CTTTTGAAATT--TTACAAGTCTAAAT-GTTTCT-TCTTTGTTNANTAAATTTGTCACATTGAATAAGG-AAGTGAATATTTCGTCTTCCA--------------CTACATTTTTTGTGC-AATTT-TTGC-AATT-CTTT-AN-A-TCCT-GGAGATATTGTAATATCT-ACCAG-TCTCAATTAAAAGTCTGTG-TGATGATG--TCCTG-AATCTACAAATTGATCTTCTATAT
Reference ( family-8175 ) : ATTTATTN-CTAA-TT-CAGA-GCCCAA-ACAGGGCAAAA-GG-AGCATAA-CA---TACATTAA--------GAAA-GGA---AACC-AAAA-GACA--GAG----C-T-AA--CAT-AAAGTGAGACAT-AATGACA--NAC-----------AT----TGA-GA-ANAAG-ACAAAATTG-TATT-GCAC-----AAG-AGGG--A---AGGA-GTCATACATTGCTCAAATT-CGA--------C-AAGA---TAA------GAATTAAAA-CAG-GTTAAGGTAAA----TTATCG--TGA-AGAAANCTA-CCCAAGGCGTT-CATAAT--TTCAAT-A--TC-TTCACAATTTAAAA---TCCAAAAAAAGC--TTTT-CTTTATC-----AGTTAAATT--ATTAAATTTAT-A-TA-CTTTTGAAATT--TTACAAGTCTAAAT-GTTTCT-TCTTTGTTNANTAAATTTGTCACATTGAATAAGG-AAGTGAATATTTCGTCTTCCA--------------CTACATTTTTTGTGC-AATTT-TTGC-AATT-CTTT-AC-A-TCCT-GGAGATATTGTAATATCT-ACCAG-TCTCAATTAAAAGTCTGTG-TGATGATG--TCCTG-AATCTACAAATTGATCTTCTATAT
gi|1 : ATTTATTG-CTAA-TT-CAGA-GCCCAA-ACAGGGCAAAA-GG-AGCATAA-CA---TACATTAA--------GAAA-AGA---AACC-AAAA-GATA--GAG----C-T-TA--CAT-AAAGTGCGACAT-AACGACA--AAC-----------AT----TGACAA-AAAAG-ACAAAATTG-TATC-GCAC-----AAG-AGGG--A---AGGA-GTCATACATTGCTCAAATT-CGA--------CCAAGA---TAA------GAATTGAAA-TAG-GTTAAGGTAAA----TTATCA--TGA-AGAAAGCTA-CCCAAGGCATT-CATGAT--TTCAAT-A--TC-TTCACAATTTAGAA---TCCAAAAAAAGC--TTTT-CTTTATC-----AGTTAAATT--ATTAAATTTGT-A-TA-CTTTTGAAATT--TTACAAGTCTAAATAGTTTCTCTCTTTGTTTAATAAATTTGTCACATTGAATAAGG-AAGTGA--ATTTCGTCTTCCAAGTAGAAAGTGGTGCTATATTTTTTGTGC-AATTT-TTGCAAATT-CTTT--C-ATTCCT-GGAGATATTGTAATATCT-ATCAG-TCTCAATTAAAAGTCTGTG-TGATGATG--TCCTG-AATCTACAAATTGATCTTCTATAT
gi|10 : ATTTATTA-CTAA-TT-CAGA-GCCCAA-ACAGGGCAAAA-GTTAGCATAA-CA---TACATCAA--------GAAAAGGA---AACC-AAAA-GACA--GAG----C-T-AA--CAT-AAAGTGAGCCAT-AGTAAC------------------T----TTA-GAGATGAG-ACAAAATTG-TATT-GCAT-----AAG-AGGG--A---AGGG-GTCCTACATTGCTCAAATT------------C-AAGG---TAA------GAATtagtaagtgtagtcaacattaatcatctacaaaaatatttagtgttgaattccataattttgttaaatgttatatatttaaaaaatgcaagtgaagag
gi|11 : agaatagAAATTTGTCACATTGAATAAGG-AAGTGAATATTTCATCTTTCA--------------CTACATTTTCTGTGC-AATTT-TTGC-AATTTCTTT-AA-C-TTCT-GATAATATTGTAATATCT-ACCAG-TCTCCATTAAAAGTCTGTG-TGATGATG--TTCTG-AATCTACAAATTGATCTTCTATAT
gi|12 : TTATTT-CTAA-TT-TAGA-GCCCAA-ACAGCTCATAC-GG-AGCATAA-CA---TAGAGAAG--------AAAA-GAA---AACC-AAAA-GACA--TAGAATTT-T-GA--CAT-AAAATAAGATAT-AATGACA--TACATGTACGTATAAT----TGA-GATATAAG-ACAAAatgcagattactagt
gi|13 : agaataaagaaaaattttaTTTATTG-CTAA-TT-CAGA-GCCCAAGACAGGGCAAAAAGG-AGCATAAACA---TACATTAA--------GAAA-AGA---AA----------------G----C-TTAA--CAT-AAAGTGGAACTA-AATGACA--AAC-----------TT----TGA-AA-AAAAG-ACAAAATTG-TATT-GCAC-----AAG-AG
gi|14 : aaatagat-CTAA-TT-CAGA-GCTCAA-ACTGGGCAAAA-GG-AGAATAA-C----------AA--------GAAA-GGA---AACC-AAAA-GACA--GAG----C-T-AA--CAT----GTGAGACAT-AGTAACATGTAC-----------AT----TGA-AA-ACGAG-ACAGAATTG-TATT-
gi|15 : ATCTATTT-CTAA-TC-CAGA-GGCCAA-ACAGGACACAACAG-AGCAAAA-CA---AATATTAA--------GAAA-GAA---AACC-AAAA-AA
gi|16 : acagtagaatagAA--------GAAA-GAG---AACC-AAAAAGACGCTAAG----C-T-AA--CAT-AAATTGAGACAC-AATGACA--CAC-----------AT----TCA-GA-ACAGG-ACAAAATTG-TATT-GCAC-----AAataaatagaaaataaaaaaaaaaa
gi|2 : TTTATTTGCTAA-TTTCAGA-GCCCAA-ACAGGGCAAAAAGG-AGCATAG-CA---TACATTAA--------GAAA-AGA---AACC-AAAA-GA-A--GAA----CTT-AAACCAT-AAAGTGAGAACTAAATGACA--AAC-----------TT----TGA-AA-AAAAG-ACAAAACTGATATTGGCAC-----AAGAAAGG--A---GGGATGTCATACA-TGCTCAAATTCCGAC-------C-AAGA---TA--------AATCGAAATTAG-GTTTAGG-AAA----TTATCA--TTG-AGAGAA-------------TT-CAGATT--TTCAAT-AACTC-TTCACAATTT-------T---AAAAAAAC--TTTT-CTTTATC-----AGTTAAATC--ATTTAATTTAT-ACTA-CTTTTGGGAATGGTTACAAGTCT-AAT-GTT--T-TCTTTGTTGACTAAATTTGTCACATTGAATAAGGTAAGTGAATATTTCA--TTCCA--------------CTAC--TTTTTGTGCAAATTTATTGC-AATT-CTTTCATAA-TCCTGGGAGATATTGTAATATCTAACCAGTTCTCAATTAAAAGTCTGTGTTGAT-ATGATTCCTGAAATCTACAATATGATCTTCTATATt
gi|3 : aaatatattATTTATTT-CATA-TT-CAGA-GTCAAA-ACAGGGCTTAA-GG-AGCACAC-CA---TACCTAAAAACATACGGAAA-AAT---AACC-AAAA-GAAA--GAG----T-C-AG--TAT-AAAATGAGACAT-AATGATA--TAT-----------AT----TGA-GT-ATAGG-ACAAA---------------------G-AAGG--A---GTGA-ATCATA--TTGCTAAAATT-CAA--------G-TAAACATTAAAAAGCTGAATTAAAA-C----TTAAGGTAAA----TCATCG--TGA-AGAAATCTA-CCAAAGA-GTT-CATCAA--TTCGAT-A--TC-TTCACAATTTAAAA---TCC-AAAAACGT--TTTT-Catttgtaattattaatt
gi|4 : gaaatagATTTATTG-CTAA-TC-CAGA-GCCCAA-ACAGGGCAAAA-GG-AGCATAA-CA---TACATTAA--------GAAA-TGA---AACC-AAAA-GATA--GAG----C-T-TA--CAT-AAAGTGAGACAT-AAAGACA--AAC-----------AT----TGA-AG-AAAAG-ACAAAATTG-TATT-GCACAATTGAAG-AGGG--A---AGGA-GTCTTACATTGCTCAAATT-CGAC-------C-AAGA---TAA------AAATTAAAA-TAG-GTTAAGGTAAA----TTAGCA--TGA-AGAAAGCTA-CCCAAGACGTT-CATAAT--TTCAAT-A--TC-TTCACAATTTAAAA---TCCAAAA
gi|5 : atagTT-CTAAATT-CTGAAGCTCAA-ACTGGGCAATA-GA-AGCATAA-CA---TA-------------------GGACTGAACT-AAAA-GACA--GAA----C-T-AA--CAT-AA-GTGAGGCAT-AATGACA--CAC-----------ATGCATTGA-GA-ATAGG-ACAAAATTG-CATT-GTAC-----AAGAAGGG--ATCGAGGA-ATCAT--ATTGCTAAAATT-CAAATAAACATT-AAGA----AAGCT---GAATTAAAA-CAG-CTTGAGGTAAA----ATAT-G--CGA-A
gi|6 : ATTTATTT-CTAA-TT-CATA-GCCCAA-ACAGGGCAAAA--G-AGCATTG-CA---TACATCAG--------GAAA-GAA---AACC-ATAA--ACA---AG----C-A-AA--CAT-AAAGTGAGACAT-AATTACA--CAC-----------AT----TGA-AA-TTAGC-ACAAAATT--TATT-AGAC-----AA--AGAG--G---AGGA-GTT-T---TTGTGTAAATT---G--------C-AAAA---TAA------AAATTataagtacaaaaca
gi|7 : atagtatATTTATTA-CTAA-TT-CAGA-GCCCAA-ACAGGGCAAAA-GT-AGTATAC-CATAGTACATCAA--------GAAA-GGA---AACCAAAAA-GACA--GAG----C-T-AT--CATAAAAGTGAGCCAT--ATA--A--GAC-----------TT----TGA-GA-ATGAGAACAAAATTG-TATT-GCAT-----AAG-AGGGTTC---AGGA-GTCATACATTGTTCAAATT------------C-AAGT---TAA------GAAtttagtaattaagaattaatttgagaggatattt
gi|8 : agaatagCCAA-GCAGGACAAAA-GG-AGCAT--------TACA-----------------------AGCC-AAAA-GACA--GAG----C-T-AG--CAT-AAAGTGAGGCAT-AATAACA--CAC-----------AT----TGA-GA-ACAGG-ACAAAATTG-TATT-GTACAATT-AAG-AAGG--A---AGGA-GACATAC--TGCTAAAATT-C-------------AAA---TAAGCT---GAATTAAAA-CAA---CAAGGTAAA----TT
gi|9 : aatataatagatttatt------GAATTAAA--CATCGTTAAGGGGAAGACTCTACCGAGTGAGAGAAATCTAGCCCAAGGCGCTACAGAATAATTCAATTA--TCCTTCACAATTTAAAAAGTCCCAAGAAAAGTAGTTTCGCTTTATCTGGACAGTTAAAGTCAATTACATATATCA-TAGCTTTTGAATTT--TTACAAGTCTA-----TTTCT-t
Alignments
lowQualScore : 11111111 11111111111 11111 44444444444444 222222 11 1111 11 11 111 11 1 33333 11 111 1 11 22222 1 1 77777777777777 1 1 1 1 33333 1 1 1 1 11 1
lowQualScore : 44 3 3 3 3 9 3 3 555 44 00000000 2 555 2 2 0 44 6666 3 3 44 3 3 666 44444444444 6666 3 6 1 3 3 3 66666 8 999999 4 2 444 0 66666666666666 777 555555 5 00 1 2222 99 6 1 8 66 8 0 11 8 11 8 0 444 5 33 0 33333 88 777 3 88 66666 7 3 1 1 3 7 88 88888888888888 7 3 3 3 3 44444 3 3 3 3 6 88 3
lowQualScore : .. . . . . . . . ... .. ........ . ... . . . .. .... . . .. . . ... ........... .... . . . . . . ..... . ...... . . ... . .............. ... ...... . .. . .... .. . . . .. . . .. . .. . . ... . .. . ..... .. ... . .. ..... . . . . . . .. .............. . . . . . ..... . . . . . .. .
lowQualScore : 33 3 3 3 1 2 1 1 444 33 44444444 9 000 9 9 2 22 5555 1 1 22 1 1 333 66666666666 5555 1 2 0 1 3 3 88888 0 222222 4 0 888 1 00000000000000 888 555555 7 00 4 1111 22 7 0 0 44 0 6 00 0 00 0 8 000 6 88 0 33333 33 777 3 33 00000 3 3 0 0 3 3 00 33333333333333 3 3 3 3 3 33333 3 3 3 3 7 33 3
consensus : ATTTATTN-CTAA-TT-CAGA-GCCCAA-ACAGGGCAAAA-GG-AGCATAA-CA---TACATTAA--------GAAA-GGA---AACC-AAAA-GACA--GAG----C-T-AA--CAT-AAAGTGAGACAT-AATGACA--NAC-----------AT----TGA-GA-ANAAG-ACAAAATTG-TATT-GCAC-----AAG-AGGG--A---AGGA-GTCATACATTGCTCAAATT-CGA--------C-AAGA---TAA------GAATTAAAA-CAG-GTTAAGGTAAA----TTATCG--TGA-AGAAANCTA-CCCAAGGCGTT-CATAAT--TTCAAT-A--TC-TTCACAATTTAAAA---TCCAAAAAAAGC--TTTT-CTTTATC-----AGTTAAATT--ATTAAATTTAT-A-TA-CTTTTGAAATT--TTACAAGTCTAAAT-GTTTCT-TCTTTGTTNANTAAATTTGTCACATTGAATAAGG-AAGTGAATATTTCGTCTTCCA--------------CTACATTTTTTGTGC-AATTT-TTGC-AATT-CTTT-A-ANTCCT-GGAGATATTGTAATATCT-ACCAG-TCTCAATTAAAAGTCTGTG-TGATGATG--TCCTG-AATCTACAAATTGATCTTCTATAT
Reference ( family-8175 ) : ATTTATTN-CTAA-TT-CAGA-GCCCAA-ACAGGGCAAAA-GG-AGCATAA-CA---TACATTAA--------GAAA-GGA---AACC-AAAA-GACA--GAG----C-T-AA--CAT-AAAGTGAGACAT-AATGACA--NAC-----------AT----TGA-GA-ANAAG-ACAAAATTG-TATT-GCAC-----AAG-AGGG--A---AGGA-GTCATACATTGCTCAAATT-CGA--------C-AAGA---TAA------GAATTAAAA-CAG-GTTAAGGTAAA----TTATCG--TGA-AGAAANCTA-CCCAAGGCGTT-CATAAT--TTCAAT-A--TC-TTCACAATTTAAAA---TCCAAAAAAAGC--TTTT-CTTTATC-----AGTTAAATT--ATTAAATTTAT-A-TA-CTTTTGAAATT--TTACAAGTCTAAAT-GTTTCT-TCTTTGTTNANTAAATTTGTCACATTGAATAAGG-AAGTGAATATTTCGTCTTCCA--------------CTACATTTTTTGTGC-AATTT-TTGC-AATT-CTTT-A-NATCCT-GGAGATATTGTAATATCT-ACCAG-TCTCAATTAAAAGTCTGTG-TGATGATG--TCCTG-AATCTACAAATTGATCTTCTATAT
gi|1 : ATTTATTG-CTAA-TT-CAGA-GCCCAA-ACAGGGCAAAA-GG-AGCATAA-CA---TACATTAA--------GAAA-AGA---AACC-AAAA-GATA--GAG----C-T-TA--CAT-AAAGTGCGACAT-AACGACA--AAC-----------AT----TGACAA-AAAAG-ACAAAATTG-TATC-GCAC-----AAG-AGGG--A---AGGA-GTCATACATTGCTCAAATT-CGA--------CCAAGA---TAA------GAATTGAAA-TAG-GTTAAGGTAAA----TTATCA--TGA-AGAAAGCTA-CCCAAGGCATT-CATGAT--TTCAAT-A--TC-TTCACAATTTAGAA---TCCAAAAAAAGC--TTTT-CTTTATC-----AGTTAAATT--ATTAAATTTGT-A-TA-CTTTTGAAATT--TTACAAGTCTAAATAGTTTCTCTCTTTGTTTAATAAATTTGTCACATTGAATAAGG-AAGTGA--ATTTCGTCTTCCAAGTAGAAAGTGGTGCTATATTTTTTGTGC-AATTT-TTGCAAATT-CTTT-C-ATTCCT-GGAGATATTGTAATATCT-ATCAG-TCTCAATTAAAAGTCTGTG-TGATGATG--TCCTG-AATCTACAAATTGATCTTCTATAT
gi|10 : ATTTATTA-CTAA-TT-CAGA-GCCCAA-ACAGGGCAAAA-GTTAGCATAA-CA---TACATCAA--------GAAAAGGA---AACC-AAAA-GACA--GAG----C-T-AA--CAT-AAAGTGAGCCAT-AGTAAC------------------T----TTA-GAGATGAG-ACAAAATTG-TATT-GCAT-----AAG-AGGG--A---AGGG-GTCCTACATTGCTCAAATT------------C-AAGG---TAA------GAATtagtaagtgtagtcaacattaatcatctacaaaaatatttagtgttgaattccataattttgttaaatgttatatatttaaaaaatgcaagtgaagag
gi|11 : agaatagAAATTTGTCACATTGAATAAGG-AAGTGAATATTTCATCTTTCA--------------CTACATTTTCTGTGC-AATTT-TTGC-AATTTCTTT-A-ACTTCT-GATAATATTGTAATATCT-ACCAG-TCTCCATTAAAAGTCTGTG-TGATGATG--TTCTG-AATCTACAAATTGATCTTCTATAT
gi|12 : TTATTT-CTAA-TT-TAGA-GCCCAA-ACAGCTCATAC-GG-AGCATAA-CA---TAGAGAAG--------AAAA-GAA---AACC-AAAA-GACA--TAGAATTT-T-GA--CAT-AAAATAAGATAT-AATGACA--TACATGTACGTATAAT----TGA-GATATAAG-ACAAAatgcagattactagt
gi|13 : agaataaagaaaaattttaTTTATTG-CTAA-TT-CAGA-GCCCAAGACAGGGCAAAAAGG-AGCATAAACA---TACATTAA--------GAAA-AGA---AA----------------G----C-TTAA--CAT-AAAGTGGAACTA-AATGACA--AAC-----------TT----TGA-AA-AAAAG-ACAAAATTG-TATT-GCAC-----AAG-AG
gi|14 : aaatagat-CTAA-TT-CAGA-GCTCAA-ACTGGGCAAAA-GG-AGAATAA-C----------AA--------GAAA-GGA---AACC-AAAA-GACA--GAG----C-T-AA--CAT----GTGAGACAT-AGTAACATGTAC-----------AT----TGA-AA-ACGAG-ACAGAATTG-TATT-
gi|15 : ATCTATTT-CTAA-TC-CAGA-GGCCAA-ACAGGACACAACAG-AGCAAAA-CA---AATATTAA--------GAAA-GAA---AACC-AAAA-AA
gi|16 : acagtagaatagAA--------GAAA-GAG---AACC-AAAAAGACGCTAAG----C-T-AA--CAT-AAATTGAGACAC-AATGACA--CAC-----------AT----TCA-GA-ACAGG-ACAAAATTG-TATT-GCAC-----AAataaatagaaaataaaaaaaaaaa
gi|2 : TTTATTTGCTAA-TTTCAGA-GCCCAA-ACAGGGCAAAAAGG-AGCATAG-CA---TACATTAA--------GAAA-AGA---AACC-AAAA-GA-A--GAA----CTT-AAACCAT-AAAGTGAGAACTAAATGACA--AAC-----------TT----TGA-AA-AAAAG-ACAAAACTGATATTGGCAC-----AAGAAAGG--A---GGGATGTCATACA-TGCTCAAATTCCGAC-------C-AAGA---TA--------AATCGAAATTAG-GTTTAGG-AAA----TTATCA--TTG-AGAGAA-------------TT-CAGATT--TTCAAT-AACTC-TTCACAATTT-------T---AAAAAAAC--TTTT-CTTTATC-----AGTTAAATC--ATTTAATTTAT-ACTA-CTTTTGGGAATGGTTACAAGTCT-AAT-GTT--T-TCTTTGTTGACTAAATTTGTCACATTGAATAAGGTAAGTGAATATTTCA--TTCCA--------------CTAC--TTTTTGTGCAAATTTATTGC-AATT-CTTTCATAATCCTGGGAGATATTGTAATATCTAACCAGTTCTCAATTAAAAGTCTGTGTTGAT-ATGATTCCTGAAATCTACAATATGATCTTCTATATt
gi|3 : aaatatattATTTATTT-CATA-TT-CAGA-GTCAAA-ACAGGGCTTAA-GG-AGCACAC-CA---TACCTAAAAACATACGGAAA-AAT---AACC-AAAA-GAAA--GAG----T-C-AG--TAT-AAAATGAGACAT-AATGATA--TAT-----------AT----TGA-GT-ATAGG-ACAAA---------------------G-AAGG--A---GTGA-ATCATA--TTGCTAAAATT-CAA--------G-TAAACATTAAAAAGCTGAATTAAAA-C----TTAAGGTAAA----TCATCG--TGA-AGAAATCTA-CCAAAGA-GTT-CATCAA--TTCGAT-A--TC-TTCACAATTTAAAA---TCC-AAAAACGT--TTTT-Catttgtaattattaatt
gi|4 : gaaatagATTTATTG-CTAA-TC-CAGA-GCCCAA-ACAGGGCAAAA-GG-AGCATAA-CA---TACATTAA--------GAAA-TGA---AACC-AAAA-GATA--GAG----C-T-TA--CAT-AAAGTGAGACAT-AAAGACA--AAC-----------AT----TGA-AG-AAAAG-ACAAAATTG-TATT-GCACAATTGAAG-AGGG--A---AGGA-GTCTTACATTGCTCAAATT-CGAC-------C-AAGA---TAA------AAATTAAAA-TAG-GTTAAGGTAAA----TTAGCA--TGA-AGAAAGCTA-CCCAAGACGTT-CATAAT--TTCAAT-A--TC-TTCACAATTTAAAA---TCCAAAA
gi|5 : atagTT-CTAAATT-CTGAAGCTCAA-ACTGGGCAATA-GA-AGCATAA-CA---TA-------------------GGACTGAACT-AAAA-GACA--GAA----C-T-AA--CAT-AA-GTGAGGCAT-AATGACA--CAC-----------ATGCATTGA-GA-ATAGG-ACAAAATTG-CATT-GTAC-----AAGAAGGG--ATCGAGGA-ATCAT--ATTGCTAAAATT-CAAATAAACATT-AAGA----AAGCT---GAATTAAAA-CAG-CTTGAGGTAAA----ATAT-G--CGA-A
gi|6 : ATTTATTT-CTAA-TT-CATA-GCCCAA-ACAGGGCAAAA--G-AGCATTG-CA---TACATCAG--------GAAA-GAA---AACC-ATAA--ACA---AG----C-A-AA--CAT-AAAGTGAGACAT-AATTACA--CAC-----------AT----TGA-AA-TTAGC-ACAAAATT--TATT-AGAC-----AA--AGAG--G---AGGA-GTT-T---TTGTGTAAATT---G--------C-AAAA---TAA------AAATTataagtacaaaaca
gi|7 : atagtatATTTATTA-CTAA-TT-CAGA-GCCCAA-ACAGGGCAAAA-GT-AGTATAC-CATAGTACATCAA--------GAAA-GGA---AACCAAAAA-GACA--GAG----C-T-AT--CATAAAAGTGAGCCAT--ATA--A--GAC-----------TT----TGA-GA-ATGAGAACAAAATTG-TATT-GCAT-----AAG-AGGGTTC---AGGA-GTCATACATTGTTCAAATT------------C-AAGT---TAA------GAAtttagtaattaagaattaatttgagaggatattt
gi|8 : agaatagCCAA-GCAGGACAAAA-GG-AGCAT--------TACA-----------------------AGCC-AAAA-GACA--GAG----C-T-AG--CAT-AAAGTGAGGCAT-AATAACA--CAC-----------AT----TGA-GA-ACAGG-ACAAAATTG-TATT-GTACAATT-AAG-AAGG--A---AGGA-GACATAC--TGCTAAAATT-C-------------AAA---TAAGCT---GAATTAAAA-CAA---CAAGGTAAA----TT
gi|9 : aatataatagatttatt------GAATTAAA--CATCGTTAAGGGGAAGACTCTACCGAGTGAGAGAAATCTAGCCCAAGGCGCTACAGAATAATTCAATTA--TCCTTCACAATTTAAAAAGTCCCAAGAAAAGTAGTTTCGCTTTATCTGGACAGTTAAAGTCAATTACATATATCA-TAGCTTTTGAATTT--TTACAAGTCTA-----TTTCT-t
Alignments
lowQualScore : 11111111 11111111111 11111 44444444444444 222222 11 1111 11 11 111 11 1 33333 11 111 1 11 22222 1 1 77777777777777 1 1 1 1 222 1 1 1 1 11 1
lowQualScore : 44 3 3 3 3 9 3 3 555 44 00000000 2 555 2 2 0 44 6666 3 3 44 3 3 666 44444444444 6666 3 6 1 3 3 3 66666 8 999999 4 2 444 0 66666666666666 777 555555 5 00 1 2222 99 6 1 8 66 8 0 11 8 11 8 0 444 5 33 0 33333 88 777 3 88 66666 7 3 1 1 3 7 88 88888888888888 7 3 3 3 3 555 1 3 3 3 3 6 88 3
lowQualScore : .. . . . . . . . ... .. ........ . ... . . . .. .... . . .. . . ... ........... .... . . . . . . ..... . ...... . . ... . .............. ... ...... . .. . .... .. . . . .. . . .. . .. . . ... . .. . ..... .. ... . .. ..... . . . . . . .. .............. . . . . . ... . . . . . . .. .
lowQualScore : 33 3 3 3 1 2 1 1 444 33 44444444 9 000 9 9 2 22 5555 1 1 22 1 1 333 66666666666 5555 1 2 0 1 3 3 88888 0 222222 4 0 888 1 00000000000000 888 555555 7 00 4 1111 22 7 0 0 44 0 6 00 0 00 0 8 000 6 88 0 33333 33 777 3 33 00000 3 3 0 0 3 3 00 33333333333333 3 3 3 3 3 777 0 3 3 3 3 7 33 3
consensus : ATTTATTN-CTAA-TT-CAGA-GCCCAA-ACAGGGCAAAA-GG-AGCATAA-CA---TACATTAA--------GAAA-GGA---AACC-AAAA-GACA--GAG----C-T-AA--CAT-AAAGTGAGACAT-AATGACA--NAC-----------AT----TGA-GA-ANAAG-ACAAAATTG-TATT-GCAC-----AAG-AGGG--A---AGGA-GTCATACATTGCTCAAATT-CGA--------C-AAGA---TAA------GAATTAAAA-CAG-GTTAAGGTAAA----TTATCG--TGA-AGAAANCTA-CCCAAGGCGTT-CATAAT--TTCAAT-A--TC-TTCACAATTTAAAA---TCCAAAAAAAGC--TTTT-CTTTATC-----AGTTAAATT--ATTAAATTTAT-A-TA-CTTTTGAAATT--TTACAAGTCTAAAT-GTTTCT-TCTTTGTTNANTAAATTTGTCACATTGAATAAGG-AAGTGAATATTTCGTCTTCCA--------------CTACATTTTTTGTGC-AATTT-TTGC-AATT-CTTT-A-ANTCCT-GGAGATATTGTAATATCT-ACCAG-TCTCAATTAAAAGTCTGTG-TGATGATG--TCCTG-AATCTACAAATTGATCTTCTATAT
Reference ( family-8175 ) : ATTTATTN-CTAA-TT-CAGA-GCCCAA-ACAGGGCAAAA-GG-AGCATAA-CA---TACATTAA--------GAAA-GGA---AACC-AAAA-GACA--GAG----C-T-AA--CAT-AAAGTGAGACAT-AATGACA--NAC-----------AT----TGA-GA-ANAAG-ACAAAATTG-TATT-GCAC-----AAG-AGGG--A---AGGA-GTCATACATTGCTCAAATT-CGA--------C-AAGA---TAA------GAATTAAAA-CAG-GTTAAGGTAAA----TTATCG--TGA-AGAAANCTA-CCCAAGGCGTT-CATAAT--TTCAAT-A--TC-TTCACAATTTAAAA---TCCAAAAAAAGC--TTTT-CTTTATC-----AGTTAAATT--ATTAAATTTAT-A-TA-CTTTTGAAATT--TTACAAGTCTAAAT-GTTTCT-TCTTTGTTNANTAAATTTGTCACATTGAATAAGG-AAGTGAATATTTCGTCTTCCA--------------CTACATTTTTTGTGC-AATTT-TTGC-AATT-CTTT-A-ANTCCT-GGAGATATTGTAATATCT-ACCAG-TCTCAATTAAAAGTCTGTG-TGATGATG--TCCTG-AATCTACAAATTGATCTTCTATAT
gi|1 : ATTTATTG-CTAA-TT-CAGA-GCCCAA-ACAGGGCAAAA-GG-AGCATAA-CA---TACATTAA--------GAAA-AGA---AACC-AAAA-GATA--GAG----C-T-TA--CAT-AAAGTGCGACAT-AACGACA--AAC-----------AT----TGACAA-AAAAG-ACAAAATTG-TATC-GCAC-----AAG-AGGG--A---AGGA-GTCATACATTGCTCAAATT-CGA--------CCAAGA---TAA------GAATTGAAA-TAG-GTTAAGGTAAA----TTATCA--TGA-AGAAAGCTA-CCCAAGGCATT-CATGAT--TTCAAT-A--TC-TTCACAATTTAGAA---TCCAAAAAAAGC--TTTT-CTTTATC-----AGTTAAATT--ATTAAATTTGT-A-TA-CTTTTGAAATT--TTACAAGTCTAAATAGTTTCTCTCTTTGTTTAATAAATTTGTCACATTGAATAAGG-AAGTGA--ATTTCGTCTTCCAAGTAGAAAGTGGTGCTATATTTTTTGTGC-AATTT-TTGCAAATT-CTTT-C-ATTCCT-GGAGATATTGTAATATCT-ATCAG-TCTCAATTAAAAGTCTGTG-TGATGATG--TCCTG-AATCTACAAATTGATCTTCTATAT
gi|10 : ATTTATTA-CTAA-TT-CAGA-GCCCAA-ACAGGGCAAAA-GTTAGCATAA-CA---TACATCAA--------GAAAAGGA---AACC-AAAA-GACA--GAG----C-T-AA--CAT-AAAGTGAGCCAT-AGTAAC------------------T----TTA-GAGATGAG-ACAAAATTG-TATT-GCAT-----AAG-AGGG--A---AGGG-GTCCTACATTGCTCAAATT------------C-AAGG---TAA------GAATtagtaagtgtagtcaacattaatcatctacaaaaatatttagtgttgaattccataattttgttaaatgttatatatttaaaaaatgcaagtgaagag
gi|11 : agaatagAAATTTGTCACATTGAATAAGG-AAGTGAATATTTCATCTTTCA--------------CTACATTTTCTGTGC-AATTT-TTGC-AATTTCTTT-A-ACTTCT-GATAATATTGTAATATCT-ACCAG-TCTCCATTAAAAGTCTGTG-TGATGATG--TTCTG-AATCTACAAATTGATCTTCTATAT
gi|12 : TTATTT-CTAA-TT-TAGA-GCCCAA-ACAGCTCATAC-GG-AGCATAA-CA---TAGAGAAG--------AAAA-GAA---AACC-AAAA-GACA--TAGAATTT-T-GA--CAT-AAAATAAGATAT-AATGACA--TACATGTACGTATAAT----TGA-GATATAAG-ACAAAatgcagattactagt
gi|13 : agaataaagaaaaattttaTTTATTG-CTAA-TT-CAGA-GCCCAAGACAGGGCAAAAAGG-AGCATAAACA---TACATTAA--------GAAA-AGA---AA----------------G----C-TTAA--CAT-AAAGTGGAACTA-AATGACA--AAC-----------TT----TGA-AA-AAAAG-ACAAAATTG-TATT-GCAC-----AAG-AG
gi|14 : aaatagat-CTAA-TT-CAGA-GCTCAA-ACTGGGCAAAA-GG-AGAATAA-C----------AA--------GAAA-GGA---AACC-AAAA-GACA--GAG----C-T-AA--CAT----GTGAGACAT-AGTAACATGTAC-----------AT----TGA-AA-ACGAG-ACAGAATTG-TATT-
gi|15 : ATCTATTT-CTAA-TC-CAGA-GGCCAA-ACAGGACACAACAG-AGCAAAA-CA---AATATTAA--------GAAA-GAA---AACC-AAAA-AA
gi|16 : acagtagaatagAA--------GAAA-GAG---AACC-AAAAAGACGCTAAG----C-T-AA--CAT-AAATTGAGACAC-AATGACA--CAC-----------AT----TCA-GA-ACAGG-ACAAAATTG-TATT-GCAC-----AAataaatagaaaataaaaaaaaaaa
gi|2 : TTTATTTGCTAA-TTTCAGA-GCCCAA-ACAGGGCAAAAAGG-AGCATAG-CA---TACATTAA--------GAAA-AGA---AACC-AAAA-GA-A--GAA----CTT-AAACCAT-AAAGTGAGAACTAAATGACA--AAC-----------TT----TGA-AA-AAAAG-ACAAAACTGATATTGGCAC-----AAGAAAGG--A---GGGATGTCATACA-TGCTCAAATTCCGAC-------C-AAGA---TA--------AATCGAAATTAG-GTTTAGG-AAA----TTATCA--TTG-AGAGAA-------------TT-CAGATT--TTCAAT-AACTC-TTCACAATTT-------T---AAAAAAAC--TTTT-CTTTATC-----AGTTAAATC--ATTTAATTTAT-ACTA-CTTTTGGGAATGGTTACAAGTCT-AAT-GTT--T-TCTTTGTTGACTAAATTTGTCACATTGAATAAGGTAAGTGAATATTTCA--TTCCA--------------CTAC--TTTTTGTGCAAATTTATTGC-AATT-CTTTCATAATCCTGGGAGATATTGTAATATCTAACCAGTTCTCAATTAAAAGTCTGTGTTGAT-ATGATTCCTGAAATCTACAATATGATCTTCTATATt
gi|3 : aaatatattATTTATTT-CATA-TT-CAGA-GTCAAA-ACAGGGCTTAA-GG-AGCACAC-CA---TACCTAAAAACATACGGAAA-AAT---AACC-AAAA-GAAA--GAG----T-C-AG--TAT-AAAATGAGACAT-AATGATA--TAT-----------AT----TGA-GT-ATAGG-ACAAA---------------------G-AAGG--A---GTGA-ATCATA--TTGCTAAAATT-CAA--------G-TAAACATTAAAAAGCTGAATTAAAA-C----TTAAGGTAAA----TCATCG--TGA-AGAAATCTA-CCAAAGA-GTT-CATCAA--TTCGAT-A--TC-TTCACAATTTAAAA---TCC-AAAAACGT--TTTT-Catttgtaattattaatt
gi|4 : gaaatagATTTATTG-CTAA-TC-CAGA-GCCCAA-ACAGGGCAAAA-GG-AGCATAA-CA---TACATTAA--------GAAA-TGA---AACC-AAAA-GATA--GAG----C-T-TA--CAT-AAAGTGAGACAT-AAAGACA--AAC-----------AT----TGA-AG-AAAAG-ACAAAATTG-TATT-GCACAATTGAAG-AGGG--A---AGGA-GTCTTACATTGCTCAAATT-CGAC-------C-AAGA---TAA------AAATTAAAA-TAG-GTTAAGGTAAA----TTAGCA--TGA-AGAAAGCTA-CCCAAGACGTT-CATAAT--TTCAAT-A--TC-TTCACAATTTAAAA---TCCAAAA
gi|5 : atagTT-CTAAATT-CTGAAGCTCAA-ACTGGGCAATA-GA-AGCATAA-CA---TA-------------------GGACTGAACT-AAAA-GACA--GAA----C-T-AA--CAT-AA-GTGAGGCAT-AATGACA--CAC-----------ATGCATTGA-GA-ATAGG-ACAAAATTG-CATT-GTAC-----AAGAAGGG--ATCGAGGA-ATCAT--ATTGCTAAAATT-CAAATAAACATT-AAGA----AAGCT---GAATTAAAA-CAG-CTTGAGGTAAA----ATAT-G--CGA-A
gi|6 : ATTTATTT-CTAA-TT-CATA-GCCCAA-ACAGGGCAAAA--G-AGCATTG-CA---TACATCAG--------GAAA-GAA---AACC-ATAA--ACA---AG----C-A-AA--CAT-AAAGTGAGACAT-AATTACA--CAC-----------AT----TGA-AA-TTAGC-ACAAAATT--TATT-AGAC-----AA--AGAG--G---AGGA-GTT-T---TTGTGTAAATT---G--------C-AAAA---TAA------AAATTataagtacaaaaca
gi|7 : atagtatATTTATTA-CTAA-TT-CAGA-GCCCAA-ACAGGGCAAAA-GT-AGTATAC-CATAGTACATCAA--------GAAA-GGA---AACCAAAAA-GACA--GAG----C-T-AT--CATAAAAGTGAGCCAT--ATA--A--GAC-----------TT----TGA-GA-ATGAGAACAAAATTG-TATT-GCAT-----AAG-AGGGTTC---AGGA-GTCATACATTGTTCAAATT------------C-AAGT---TAA------GAAtttagtaattaagaattaatttgagaggatattt
gi|8 : agaatagCCAA-GCAGGACAAAA-GG-AGCAT--------TACA-----------------------AGCC-AAAA-GACA--GAG----C-T-AG--CAT-AAAGTGAGGCAT-AATAACA--CAC-----------AT----TGA-GA-ACAGG-ACAAAATTG-TATT-GTACAATT-AAG-AAGG--A---AGGA-GACATAC--TGCTAAAATT-C-------------AAA---TAAGCT---GAATTAAAA-CAA---CAAGGTAAA----TT
gi|9 : aatataatagatttatt------GAATTAAA--CATCGTTAAGGGGAAGACTCTACCGAGTGAGAGAAATCTAGCCCAAGGCGCTACAGAATAATTCAATTA--TCCTTCACAATTTAAAAAGTCCCAAGAAAAGTAGTTTCGCTTTATCTGGACAGTTAAAGTCAATTACATATATCA-TAGCTTTTGAATTT--TTACAAGTCTA-----TTTCT-t
blockSeqs : TG A T A G A T A TAG TC AACATACG A CTG A A CT AATT T T AC A A TGT ATGTACGTATA GCAT . G T A A G AATTG A ATCG T C ACA CAAATAAACATT CAT AAAGCT T CG T GACT AG G A G AC A AA T AC C AGT A AG G TGGAC CA AC G GG AAT T . G C T A AT . A A A . T CAT C G A T T G AT A
blockSeqs : A . . . . C . . . GA . . . . . . . . . . . . T . . . T T . . . AATT A TTC . A ACA CCGACC . GCT . G T . . . T . GC . . . . . . A . . . . CA . . A . . . A A . . . . . . A A . . . . . . .
blockSeqs : T . . . . A . . . TT . . . . . . . . . . . . A . . . . A . . . . . A . A ACA CGACC . GCT . G T . . . G . A . . . . . . . . .
blockSeqs : G . . . . . . . . TT . . . . . . . . . . . . C . . . . C . . . . . A . T ACA CAAG . . . C T . . . T . . . . . . . . .
blockSeqs : T . . . . . . . . TT . . . . . . . . . . . . A . . . . C . . . . . A . A AC GC . . . . G . . .
blockSeqs : T . . . . . . . . TA . . . . . . . . . . . . T . . . . A . . . . . A . A A C . . . . . .
blockSeqs : G . . . . . . . . TT . . . . . . . . . . . . A . . . . T . . . . . G . A A C . .
blockSeqs : T . . . . . . . . TC . . . . . . . . . . . . C . . . . A . . . . . A . . . C . .
blockSeqs : T . . . . . . . . TC . . . . . . . . . . . . C . . . . T . . . . . .
blockSeqs : A . . . . . . . . . . . . . . . . . . . . . G . . . . T . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . C . . . . T . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . . C .
blockSeqs : . . . . .
blockSeqCons : C*************
originalCons : ATTTATTN-CTAA-TT-CAGA-GCCCAA-ACAGGGCAAAA-GG-AGCATAA-CA---TACATTAA--------GAAA-GGA---AACC-AAAA-GACA--GAG----C-T-AA--CAT-AAAGTGAGACAT-AATGACA--NAC-----------AT----TGA-GA-ANAAG-ACAAAATTG-TATT-GCAC-----AAG-AGGG--A---AGGA-GTCATACATTGCTCAAATT-CGA--------C-AAGA---TAA------GAATTAAAA-CAG-GTTAAGGTAAA----TTATCG--TGA-AGAAANCTA-CCCAAGGCGTT-CATAAT--TTCAAT-A--TC-TTCACAATTTAAAA---TCCAAAAAAAGC--TTTT-CTTTATC-----AGTTAAATT--ATTAAATTTAT-A-TA-CTTTTGAAATT--TTACAAGTCTAAAT-GTTTCT-TCTTTGTTNANTAAATTTGTCACATTGAATAAGG-AAGTGAATATTTCGTCTTCCA--------------CTACATTTTTTGTGC-AATTT-TTGC-AATT-CTTT-A-ANTCCT-GGAGATATTGTAATATCT-ACCAG-TCTCAATTAAAAGTCTGTG-TGATGATG--TCCTG-AATCTACAAATTGATCTTCTATAT
finalCons : ATTTATTN-CTAA-TT-CAGA-GCCCAA-ACAGGGCAAAA-GG-AGCATAA-CA---TACATTAA--------GAAA-GGA---AACC-AAAA-GACA--GAG----C-T-AA--CAT-AAAGTGAGACAT-AATGACA--NAC-----------AT----TGA-GA-ANAAG-ACAAAATTG-TATT-GCAC-----AAG-AGGG--A---AGGA-GTCATACATTGCTCAAATTC-------------AAGA---TAA------GAATTAAAA-CAG-GTTAAGGTAAA----TTATCG--TGA-AGAAANCTA-CCCAAGGCGTT-CATAAT--TTCAAT-A--TC-TTCACAATTTAAAA---TCCAAAAAAAGC--TTTT-CTTTATC-----AGTTAAATT--ATTAAATTTAT-A-TA-CTTTTGAAATT--TTACAAGTCTAAAT-GTTTCT-TCTTTGTTNANTAAATTTGTCACATTGAATAAGG-AAGTGAATATTTCGTCTTCCA--------------CTACATTTTTTGTGC-AATTT-TTGC-AATT-CTTT-A-ANTCCT-GGAGATATTGTAATATCT-ACCAG-TCTCAATTAAAAGTCTGTG-TGATGATG--TCCTG-AATCTACAAATTGATCTTCTATAT
Alignments
lowQualScore : 11111111 11111111111 11111 22222 55555555555555 11 1111 11 11 11 111 11 1 33333 11 111 1 11 22222 1 1 77777777777777 1 1 1 1 222 1 1 1 1 11 1
lowQualScore : 44 3 3 3 3 3 6 3 3 555 44 00000000 2 555 2 2 0 44 6666 3 3 44 3 3 666 44444444444 6666 3 6 1 3 3 3 66666 4 4 999999 4 2 88 0 55555 9999 33 22222222222222 5 00 1 2222 99 6 1 33 8 0 11 8 11 8 0 444 5 33 0 33333 88 777 3 88 66666 7 3 1 1 3 7 88 88888888888888 7 3 3 3 3 555 1 3 3 3 3 6 88 3
lowQualScore : .. . . . . . . . . ... .. ........ . ... . . . .. .... . . .. . . ... ........... .... . . . . . . ..... . . ...... . . .. . ..... .... .. .............. . .. . .... .. . . .. . . .. . .. . . ... . .. . ..... .. ... . .. ..... . . . . . . .. .............. . . . . . ... . . . . . . .. .
lowQualScore : 33 3 3 3 1 1 2 1 1 444 33 44444444 9 000 9 9 2 22 5555 1 1 22 1 1 333 66666666666 5555 1 2 0 1 3 3 88888 0 0 222222 4 0 33 1 00000 4444 99 55555555555555 7 00 4 1111 22 7 0 00 0 6 00 0 00 0 8 000 6 88 0 33333 33 777 3 33 00000 3 3 0 0 3 3 00 33333333333333 3 3 3 3 3 777 0 3 3 3 3 7 33 3
consensus : ATTTATTN-CTAA-TT-CAGA-GCCCAA-ACAGGGCA-AAA-GG-AGCATAA-CA---TACATTAA--------GAAA-GGA---AACC-AAAA-GACA--GAG----C-T-AA--CAT-AAAGTGAGACAT-AATGACA--NAC-----------AT----TGA-GA-ANAAG-ACAAAATTG-TATT-GCAC-----AAG-A-GGG--A---AGGA-GTCATACATTGCTCAAATT-----C----AAGATAA--------------GAATTAAAA-CAG-GTTAAGGTAAA----TTATCG--TGA-AGAAANCTA-CCCAAGGCGTT-CATAAT--TTCAAT-A--TC-TTCACAATTTAAAA---TCCAAAAAAAGC--TTTT-CTTTATC-----AGTTAAATT--ATTAAATTTAT-A-TA-CTTTTGAAATT--TTACAAGTCTAAAT-GTTTCT-TCTTTGTTNANTAAATTTGTCACATTGAATAAGG-AAGTGAATATTTCGTCTTCCA--------------CTACATTTTTTGTGC-AATTT-TTGC-AATT-CTTT-A-ANTCCT-GGAGATATTGTAATATCT-ACCAG-TCTCAATTAAAAGTCTGTG-TGATGATG--TCCTG-AATCTACAAATTGATCTTCTATAT
Reference ( family-8175 ) : ATTTATTN-CTAA-TT-CAGA-GCCCAA-ACAGGGCA-AAA-GG-AGCATAA-CA---TACATTAA--------GAAA-GGA---AACC-AAAA-GACA--GAG----C-T-AA--CAT-AAAGTGAGACAT-AATGACA--NAC-----------AT----TGA-GA-ANAAG-ACAAAATTG-TATT-GCAC-----AAG-A-GGG--A---AGGA-GTCATACATTGCTCAAATT-----C----AAGATAA--------------GAATTAAAA-CAG-GTTAAGGTAAA----TTATCG--TGA-AGAAANCTA-CCCAAGGCGTT-CATAAT--TTCAAT-A--TC-TTCACAATTTAAAA---TCCAAAAAAAGC--TTTT-CTTTATC-----AGTTAAATT--ATTAAATTTAT-A-TA-CTTTTGAAATT--TTACAAGTCTAAAT-GTTTCT-TCTTTGTTNANTAAATTTGTCACATTGAATAAGG-AAGTGAATATTTCGTCTTCCA--------------CTACATTTTTTGTGC-AATTT-TTGC-AATT-CTTT-A-ANTCCT-GGAGATATTGTAATATCT-ACCAG-TCTCAATTAAAAGTCTGTG-TGATGATG--TCCTG-AATCTACAAATTGATCTTCTATAT
gi|1 : ATTTATTG-CTAA-TT-CAGA-GCCCAA-ACAGGGCA-AAA-GG-AGCATAA-CA---TACATTAA--------GAAA-AGA---AACC-AAAA-GATA--GAG----C-T-TA--CAT-AAAGTGCGACAT-AACGACA--AAC-----------AT----TGACAA-AAAAG-ACAAAATTG-TATC-GCAC-----AAG-A-GGG--A---AGGA-GTCATACATTGCTCAAATT-----CGACCAAGATAA--------------GAATTGAAA-TAG-GTTAAGGTAAA----TTATCA--TGA-AGAAAGCTA-CCCAAGGCATT-CATGAT--TTCAAT-A--TC-TTCACAATTTAGAA---TCCAAAAAAAGC--TTTT-CTTTATC-----AGTTAAATT--ATTAAATTTGT-A-TA-CTTTTGAAATT--TTACAAGTCTAAATAGTTTCTCTCTTTGTTTAATAAATTTGTCACATTGAATAAGG-AAGTGA--ATTTCGTCTTCCAAGTAGAAAGTGGTGCTATATTTTTTGTGC-AATTT-TTGCAAATT-CTTT-C-ATTCCT-GGAGATATTGTAATATCT-ATCAG-TCTCAATTAAAAGTCTGTG-TGATGATG--TCCTG-AATCTACAAATTGATCTTCTATAT
gi|10 : ATTTATTA-CTAA-TT-CAGA-GCCCAA-ACAGGGCA-AAA-GTTAGCATAA-CA---TACATCAA--------GAAAAGGA---AACC-AAAA-GACA--GAG----C-T-AA--CAT-AAAGTGAGCCAT-AGTAAC------------------T----TTA-GAGATGAG-ACAAAATTG-TATT-GCAT-----AAG-A-GGG--A---AGGG-GTCCTACATTGCTCAAATT-----C----AAGGTAA--------------GAATtagtaagtgtagtcaacattaatcatctacaaaaatatttagtgttgaattccataattttgttaaatgttatatatttaaaaaatgcaagtgaagag
gi|11 : agaatagAAATTTGTCACATTGAATAAGG-AAGTGAATATTTCATCTTTCA--------------CTACATTTTCTGTGC-AATTT-TTGC-AATTTCTTT-A-ACTTCT-GATAATATTGTAATATCT-ACCAG-TCTCCATTAAAAGTCTGTG-TGATGATG--TTCTG-AATCTACAAATTGATCTTCTATAT
gi|12 : TTATTT-CTAA-TT-TAGA-GCCCAA-ACAGCTCA-TAC-GG-AGCATAA-CA---TAGAGAAG--------AAAA-GAA---AACC-AAAA-GACA--TAGAATTT-T-GA--CAT-AAAATAAGATAT-AATGACA--TACATGTACGTATAAT----TGA-GATATAAG-ACAAAatgcagattactagt
gi|13 : agaataaagaaaaattttaTTTATTG-CTAA-TT-CAGA-GCCCAAGACAGGGCA-AAAAGG-AGCATAAACA---TACATTAA--------GAAA-AGA---AA----------------G----C-TTAA--CAT-AAAGTGGAACTA-AATGACA--AAC-----------TT----TGA-AA-AAAAG-ACAAAATTG-TATT-GCAC-----AAG-A-G
gi|14 : aaatagat-CTAA-TT-CAGA-GCTCAA-ACTGGGCA-AAA-GG-AGAATAA-C----------AA--------GAAA-GGA---AACC-AAAA-GACA--GAG----C-T-AA--CAT----GTGAGACAT-AGTAACATGTAC-----------AT----TGA-AA-ACGAG-ACAGAATTG-TATT-
gi|15 : ATCTATTT-CTAA-TC-CAGA-GGCCAA-ACAGGACACAAC-AG-AGCAAAA-CA---AATATTAA--------GAAA-GAA---AACC-AAAA-AA
gi|16 : acagtagaatagAA--------GAAA-GAG---AACC-AAAAAGACGCTAAG----C-T-AA--CAT-AAATTGAGACAC-AATGACA--CAC-----------AT----TCA-GA-ACAGG-ACAAAATTG-TATT-GCAC-----AAataaatagaaaataaaaaaaaaaa
gi|2 : TTTATTTGCTAA-TTTCAGA-GCCCAA-ACAGGGCA-AAAAGG-AGCATAG-CA---TACATTAA--------GAAA-AGA---AACC-AAAA-GA-A--GAA----CTT-AAACCAT-AAAGTGAGAACTAAATGACA--AAC-----------TT----TGA-AA-AAAAG-ACAAAACTGATATTGGCAC-----AAGAA-AGG--A---GGGATGTCATACA-TGCTCAAATTCCGACC----AAGATA----------------AATCGAAATTAG-GTTTAGG-AAA----TTATCA--TTG-AGAGAA-------------TT-CAGATT--TTCAAT-AACTC-TTCACAATTT-------T---AAAAAAAC--TTTT-CTTTATC-----AGTTAAATC--ATTTAATTTAT-ACTA-CTTTTGGGAATGGTTACAAGTCT-AAT-GTT--T-TCTTTGTTGACTAAATTTGTCACATTGAATAAGGTAAGTGAATATTTCA--TTCCA--------------CTAC--TTTTTGTGCAAATTTATTGC-AATT-CTTTCATAATCCTGGGAGATATTGTAATATCTAACCAGTTCTCAATTAAAAGTCTGTGTTGAT-ATGATTCCTGAAATCTACAATATGATCTTCTATATt
gi|3 : aaatatattATTTATTT-CATA-TT-CAGA-GTCAAA-ACAGGGCT-TAA-GG-AGCACAC-CA---TACCTAAAAACATACGGAAA-AAT---AACC-AAAA-GAAA--GAG----T-C-AG--TAT-AAAATGAGACAT-AATGATA--TAT-----------AT----TGA-GT-ATAGG-ACAAA---------------------G-A-AGG--A---GTGA-ATCATA--TTGCTAAAATT-----C----AAG-TAAACATTAAAAAGCT-GAATTAAAA-C----TTAAGGTAAA----TCATCG--TGA-AGAAATCTA--CCAAAGAGTT-CATCAA--TTCGAT-A--TC-TTCACAATTTAAAA---TCC-AAAAACGT--TTTT-Catttgtaattattaatt
gi|4 : gaaatagATTTATTG-CTAA-TC-CAGA-GCCCAA-ACAGGGCA-AAA-GG-AGCATAA-CA---TACATTAA--------GAAA-TGA---AACC-AAAA-GATA--GAG----C-T-TA--CAT-AAAGTGAGACAT-AAAGACA--AAC-----------AT----TGA-AG-AAAAG-ACAAAATTG-TATT-GCACAATTGAAG-A-GGG--A---AGGA-GTCTTACATTGCTCAAATTCGAC-C----AAGATAA--------------AAATTAAAA-TAG-GTTAAGGTAAA----TTAGCA--TGA-AGAAAGCTA-CCCAAGACGTT-CATAAT--TTCAAT-A--TC-TTCACAATTTAAAA---TCCAAAA
gi|5 : atagTT-CTAAATT-CTGAAGCTCAA-ACTGGGCA-ATA-GA-AGCATAA-CA---TA-------------------GGACTGAACT-AAAA-GACA--GAA----C-T-AA--CAT-AA-GTGAGGCAT-AATGACA--CAC-----------ATGCATTGA-GA-ATAGG-ACAAAATTG-CATT-GTAC-----AAG-AAGGG--ATCGAGGA-ATCATA--TTGCTAAAATT-----C----AA-ATAAACATTAAGAAAGCTGAATTAAAA-CAG-CTTGAGGTAAA----ATAT-G--CGA-A
gi|6 : ATTTATTT-CTAA-TT-CATA-GCCCAA-ACAGGGCA-AAA-G--AGCATTG-CA---TACATCAG--------GAAA-GAA---AACC-ATAA--ACA---AG----C-A-AA--CAT-AAAGTGAGACAT-AATTACA--CAC-----------AT----TGA-AA-TTAGC-ACAAAATT--TATT-AGAC-----AA--A-GAG--G---AGGA-GTT-T---TTGTGTAAATTG----C----AAAATAA--------------AAATTataagtacaaaaca
gi|7 : atagtatATTTATTA-CTAA-TT-CAGA-GCCCAA-ACAGGGCA-AAA-GT-AGTATAC-CATAGTACATCAA--------GAAA-GGA---AACCAAAAA-GACA--GAG----C-T-AT--CATAAAAGTGAGCCAT--ATA--A--GAC-----------TT----TGA-GA-ATGAGAACAAAATTG-TATT-GCAT-----AAG-A-GGGTTC---AGGA-GTCATACATTGTTCAAATT-----C----AAGTTAA--------------GAAtttagtaattaagaattaatttgagaggatattt
gi|8 : agaatagCCAA-GCAGGACA-AAA-GG-AGCAT--------TACA-----------------------AGCC-AAAA-GACA--GAG----C-T-AG--CAT-AAAGTGAGGCAT-AATAACA--CAC-----------AT----TGA-GA-ACAGG-ACAAAATTG-TATT-GTACAATT-AAG-A-AGG--A---AGGA-GACATAC--TGCTAAAATT-----C----AA-ATAAGCT-----------GAATTAAAA-CAA---CAAGGTAAA----TT
gi|9 : aatataatagatttatt--------------GAATTAAA--CATCGTTAAGGGGAAGACTCTACCGAGTGAGAGAAATCTAGCCCAAGGCGCTACAGAATAATTCAATTA--TCCTTCACAATTTAAAAAGTCCCAAGAAAAGTAGTTTCGCTTTATCTGGACAGTTAAAGTCAATTACATATATCA-TAGCTTTTGAATTT--TTACAAGTCTA-----TTTCT-t