lowQualScore : 111111111111111111111111111111111111111111111111111111111111
lowQualScore : 2 2 2 11 22 2 11 33 2 11 555555 222 2222 1 111 3333333 1 22222 11 22222222 111 1111 555555555555555555555555555555555555555555555555555555555555 111111111 111111111 22222 333333333333333333333
lowQualScore : 6 3 7 0 0 8 11 44 0 11 8 8 33 8 8 0 0 99 88 5 666666 000 5 77 7777 1 5 000 77 5 0000000 5 3 0 66 5 888 5 66 5 3 66 33333 0 5 9 9999 5 22 4 55555555 4 55 000 3 88 6666 888888888888888888888888888888888888888888888888888888888888 3 3 3 3 777777777 333333333 44 55555 5 2 2 0 2 33 2 2 2 2 777 2 2 2 2 4 2 666666666666666666666 55555 2 33 1 2 2 33 2 2 7777 44
lowQualScore : . . . . . . .. .. . .. . . .. . . . . .. .. . ...... ... . .. .... . . ... .. . ....... . . . .. . ... . .. . . .. ..... . . . .... . .. . ........ . .. ... . .. .... ............................................................ . . . . ......... ......... .. ..... . . . . . .. . . . . ... . . . . . . ..................... ..... . .. . . . .. . . .... ..
lowQualScore : 7 7 0 0 6 0 66 55 0 00 0 0 00 0 0 0 8 22 77 7 777777 000 7 99 7777 4 7 000 11 0 3333333 0 5 0 99 0 888 0 99 0 2 99 22222 1 0 4 4444 7 22 4 66666666 0 55 888 6 66 8888 333333333333333333333333333333333333333333333333333333333333 6 6 3 3 888888888 333333333 66 77777 0 4 4 2 4 22 2 1 1 1 444 8 1 1 1 0 0 000000000000000000000 66666 2 11 0 2 5 44 5 5 8888 33
consensus : NNNNATAGTTAGGAATGCTAC-AATTTAACTCAATTTTAAAAGTTTAATAAATAATTGAAATGGGG-AATCCTGTGTGTGTN-GCTCCTGCAGAT-TTAGAAAAACCATCTTTCTNGAATCC--T-GTGTGT-GTTGCTCCTGC-A-GAT-TTAG--AAAA-CCAT-CCTTCTTA------GTTGT-AACTGCATA-CATTC--AAAAT--TGT-AAA-CTG---ACNAATACATACATG-ATTAAGTTTG-TTT--GCA-AT---TTTT-ATGATAT--GACACGGT-GAAGG--G-N-C-AACT-TAACTGTGAT----ATTTT--AAATAA-TGN----G-CCAAATAC-TTG--CACA-T-GATT-T--AA---AAATGTATGT-GTATG----C--AATGTANG-T-ACTA-T-T--ATGTA-GCTAATGA--TTT--T----TAT-GT-T-AT-TTAT-------T-ATG---------TA--TTTTT---ATGTC-AT-G-TCG-GTCAAA--A-GCT-CTA-C-A---GAGC-T-TA-T-G-TTACT---G--TT---A-A-------ATA-----TCCG-AC--TTT-AAAT-A--AA-ATT-T----TCTGAA-CTTCT
Reference ( gi|1 ) : AGAGATA-TTAGGAATGCTACAAATTTAAATCAA-TTTAAAAGTTTAATAAATAATTGGAATGGGG-AATCCTGTGTGTGTT-GCTCCTGTAGATCTTAG-AAAACCATCTTTCTNGAATCC--T-GTGTGT-G--GCTCCTGC-A-GATCTTAG--AAAA-TCAT-CTTTCTTA----TAGTTGT-AATTGCATA-CATTC--AAA-C--TGT-AAA-CTG---ACTAATACATACATGTATTAAGTTTG-TTT--GCA-AT---TTTT-ATGATAT--GACACGGT-GAAGG--G-A-C-AACT-TAACTGTGAT----AGTTT--AAATAA-TAA----G-CCAAATAC-TTG--CACA-T-GATT-T--AC---AAATGTATGT-GTATG--AAC--AATGTATG-T-ACTAGTAT--ATGTA-GCTAATGA--TTTACTGA-ATAT-GT-T-AT-TTAT-------T-ATG---------TA--TTTCC---ATGTC-AT-G-TCG-GTCAAA--A-GCT-CTA-C-A---GAAC-T-TA-T-G-TTACT---G--TT---A-A-------ATA-----TCCG-AC--TTT-AAAT-A--AA-ATT-T----TCTGAA-CTTCT
gi|3 : ATAGTTAGGAATGCTAC-AATTTAACTCAATTTTAAAAGTTTAATAAATACTTGAAATGGGA-AATCCTGTGTGTGTT-GCTCCTGTAGAT-TTAGAAAAACCATCTTTCT
gi|2 : ATAGTTAGGAATGCTAC-AATTTAACTCAATTTTAAAAGTTTAATAAATACTTGAAATGGGA-AATCCTGTGTGTGTT-GCTCCTGTAGAT-TTAGAAAAACCATCTTTCTtagttgtgaattgcatacattcaaactgtaaaactgactatacatacatgtattaagtttgttttgcaatttttatgatatgacacggtgagggacaaacttactgtgatagttttagaataataagtccaaatacttgcacatggatttacaaatgtatgtggtatgaacaatgttggtaactagtatatgtaggctaatggcttttactgaggtatgttatttattatgtattttatgtcgatgtggtcaaaagctctacacatgaactcatggttactggtttagaatatcgacttttaataaaattttctgaacttctgaaggctaaaaggtaa
gi|6 : ATA-TTAGGAATACTACAAATTTAAATCAA-TTTAAAAGTTTAATAAATAATTGGAATGGGG-AATCCT-TGTGTGTG-GCTCCTGCAGATA-TAG-AAAACCATCTTTCTtagttgtgaattgcatacattcaaactgtaaaactgactatacatacatgtattaagtttgttttgcaatttttatgatatgacacggtgagggacaaacttactgtgatagttttagaataataagtccaaatacttgcacatggatttacaaatgtatgtggtatgaacaatgttggtaactagtatatgtaggctaatggcttttactgaggtatgttatttattatgtattttatgtcgatgtggtcaaaagctctacacatgaactcatggttactggtttagaatatcgacttttaataaaattttctgaacttctgaaggctaaaaggtaa
gi|5 : aAA-TTTAAAAGTTTTATAAATAATTAGAATGGGG-AATCCTGTGTGTGTG-GCTCCTGCAGATCTTAG-AAAACCTTCCTTtagttgtactgcatcattcaaaattgtaaactgactaatacatattatgtttgcaatttttatgatacgacacggtgaagggtcaacttaactgtgatattttaaataatgtgcaaaatacttgcacaagatttaaaaaatgtatgtgttgtgtatgcatagctgatgtttatgttatttatgtatttttttatgtcatgtcggtcaaaagctctacagagcttatgttactgttttaaaatatccgactttaatgaat
gi|4 : AATAATTGAATCGGTGCAATCCAGTGTGTGTCGGCTCCTGattacatgtagttgtactacatacattcaaaattgtaacctgactaatacatatcatgtttgcaatttttatgatatgacatggtaaagggtcaacttaactgtgatattttaaatagtgtgccaaatacttgcacatgatttagaaatgtatgtatctgtctgtgtacgtatatataaatgtagttaattttttagtttatttatgtaccagtatgtatttttatgtcatgtcgatcaaaagctctacagagcttatgcttccgactataaataaaattttctgaatctgaa
gi|6 : GAATCC--TTGTGTGT-G--GCTCCTGC-A-GATAT-AG--AAAA-CCAT-CTTTCTTA------GTTGT-A-CTGCAT--CATTC--AAAAT--TGT-AAA-CTG---ACTAATACATA------TTA----TG-TTT--GCA-AT---TTTT-ATGATAC--GACACGGT-GAAGG--G-T-C-AACT-TAACTGTGAT----ATTTT--AAATAA-TGT----G-CAAAATAC-TTG--CACA-A-GATT-TA-AA---AAATGTATGT-GT-TG---------TGTATG-C-A------------TA-GCTGATG---TT--------TAT-GT-T-AT-TTA--------T-GTA---------TT--TTTTT---ATGTC-AT-G-TCG-GTCAAA--A-GCT-CTA-C-A---GAGC-T-TA-T-G-TTACT---G--TTTTAA-A-------ATA-----TCCG-AC--TTT-AAccatgatgataggcaacagcattccttcttagctgtactttataacatttcgaaattgtaaaactgtcgacaaaacacatgatttagtttacaatgtattttgtaatatccgacatggtgaagggtcaacttaactgtgatcaaaagttaaataaataatcgtgcctaataccttgcacatggtggtacgtaaaatgtatgttatgttagcgtaatctttaatattattgtatgtagttttttgttttattatcatttgtcgaccaaaaagctctacagagcttttgtttactgcttatatatattttccgaactataataaaaattttctgaaatctgga
gi|5 : aatattaggaatactacaaatttaaatcaatttaaaagtttaataaataattggaatgggGAATCC--T-GTGTGT-GTGGCTCCTGC-A-GATCTTAG--AAAA-CCTT-CCTTATTACATGTAGTTGT-A-CTACATA-CATTC--AAAAT--TGT-AAC-CTG---ACTAATACATA------TCA----TG-TTT--GCA-AT---TTTT-ATGATAT--GACATGGT-AAAGG--G-T-C-AACT-TAACTGTGAT----ATTTT--AAATAG-TGT----G-CCAAATAC-TTG--CACA-T-GATT-T--AG---AAATGTATGT-ATCTG---TC--TGTGTACG-T-A-TA-TATAAATGTA-GTTAATTT--TTTAGT---------T-T-AT-TTATGTACCAGT-ATG---------TA--TTTTT---ATGTC-AT-G-TCG-ATCAAA--A-GCT-CTA-C-A---GAGC-T-TA-T-G-CT--------------------------------TCCG-AC--TAT-AAAT-A--AA-ATT-T----TCTGAA-tgaat
gi|3 : aatttaaaagttttataaataattagaatgggAATCC--T-GTGTGT-GTTGCTCCTGT-A-GAT-TTAG--AAAAACCAT-CTTTCTTA------GTTGTGAATTGCATA-CATTC--AAA-C--TGTAAAA-CTG---ACT-ATACATACATGTATTAAGTTTGTTTT--GCA-AT---TTTT-ATGATAT--GACACGGT-G-AGG--G-A-CAAACT-T-ACTGTGAT----AGTTTTAGAATAA-TAA----GTCCAAATAC-TTG--CACA-TGGATT-T--AC---AAATGTATGTGGTATG--AAC--AATGTTGG-TAACTAGTAT--ATGTAGGCTAATGGCTTTTACTGAGGTAT-GT-T-AT-TTAT-------T-ATG---------TA--TTT-T---ATGTCGAT-G-T-G-GTCAAA--A-GCT-CTA-C-ACATGAAC-T-CA-TGG-TTACT---GGTTT---AGA-------ATA-----T-CG-AC--TTT-TAAT-A--AA-ATT-T----TCTGAA-CTTCTtctgaa
gi|2 : atagttaggaatgctacaatttaactcaattttaaaagtttaataaatacttgaaatgggaAATCC--T-GTGTGT-GTTGCTCCTGT-A-GAT-TTAG--AAAAACCAT-CTTTCTTA------GTTGTGAATTGCATA-CATTC--AAA-C--TGTAAAA-CTG---ACT-ATACATACATGTATTAAGTTTGTTTT--GCA-AT---TTTT-ATGATAT--GACACGGT-G-AGG--G-A-CAAACT-T-ACTGTGAT----AGTTTTAGAATAA-TAA----GTCCAAATAC-TTG--CACA-TGGATT-T--AC---AAATGTATGTGGTATG--AAC--AATGTTGG-TAACTAGTAT--ATGTAGGCTAATGGCTTTTACTGAGGTAT-GT-T-AT-TTAT-------T-ATG---------TA--TTT-T---ATGTCGAT-G-T-G-GTCAAA--A-GCT-CTA-C-ACATGAAC-T-CA-TGG-TTACT---GGTTT---AGA-------ATA-----T-CG-AC--TTT-TAAT-A--AA-ATT-T----TCTGAA-CTTCTgaaggctaaaaggtaa
gi|4 : atagttaggaatgctacaatttaactcaattttaaaagtttaataaatacttgaaatgggaAATCCAGT-GTGTGTCG--GCTCCTGCCATGATGATAGGCAACA-GCATTCCTTCTTA------GCTGT-ACTT-TATAACATTTCGAAA-T--TGT-AAAACTGTCGACAAA---ACACATG-ATTTAGTTTA-------CA-ATGTATTTT-GTAATATCCGACATGGT-GAAGG--G-T-C-AACT-TAACTGTGATCAAAAGTT---AAATAAATAATCGTG-CCTAATACCTTG--CACA-T-GGTGGT--ACGTAAAATGTATGT--TATGTTAGCGTAATCTTTAAT-ATTATTGT--ATGTA-GTT-------TTT---------T-GT-T----TTAT-------T-AT----------CA--TTT--------------G-TCG-ACCAAA--AAGCT-CTA-C-A---GAGC-T-TT-T-GTTTACT---GC-TT---A-T-------ATATATTTTCCGAAC--TAT-AATA-A--AA-ATT-T----TCTGAA-gaaggctaaaaggtaa
gi|7 : aataattgaatcggtgcAG--CAAA-CCAT-CCTTTTCA------GT-AT-GACTGCATA-CATTC--AAA-AAATGT-AAA-ATG---ACAAA---ATACATA-A--AAGTATG-TTTCGGCA-AT---TTTT-ATGATAT--GACACGGT-GAAGGTTGTA-C-A-CT-T--TTG-GAT----ATTTT--AAATTA-TTGTT--G-CCAAATAC-TTAAACACAAT-GATT-TTAAA---AAATGTATGT-------------AATGT-TG-A-A------------TA-GCTAA--A--TTT--T----TATCGTAT-AT-TTAT-------G-AAG---------TA--TTTTTCTTATGTC-ATCG-TCGCGTCAAA--A-GCT-CTA-C-A---GAGC-TATA-T-G-Tatctgga
gi|9 : tcattaAAA-CCAT-CTTTCTCA------GTTGT-A-CTGCATA-CATTC--AAAAT--TGT-AAA-ATG---ACAAATACATATA------AAGTATG-TTT--GCA-AT---TTTTTATGATAT--GACACGGT-GAAGG--G-------TTGTAACTTTGAT----ATTTT--AAATTT-TGT----G-CCAAATAC-TTG--CACA-T-GATT-T--AA---AAATGTA--T-GTATG---------TGTAGG----CT--------TTTA----AAT-A--TTT-------TAT-GT-T-AT-TTAT-------GAATG---------TATTTTTTT---ATGTC-AT-G-TCG-GTCAAA--A-GCT-CTACC-A---GAGC-T-TA-T-G-TTCCT---atcctg
gi|14 : gcTTA-TTC--GAATAT---ATCT-ATGATAT---ACACGGTTGAAGG--T-TTC-AACT-TAACT-TGAT----ATTTT--AAATAA-TGT----G-CCAAATAC-TGC--CACA-A-GATT-T--AG---AAATGTATGT-AT
gi|8 : gaAC----AATTT--AAATAA-TGT----A-CCAAATAC-TTG--CAGA-T-GATT-T--A-----------------------AC--AATGTA---------------ATGTA-GCTAATG---TGT-------TAT-GT-T-AT-TTATG------T-ATG---------TG--TCTTT---ATGTC-AT-G-TCG-GTCAAA--A-GTT-CTA-C-A---GTGC-T-TA-T-G-TTACT---G--TT---ATATACATGTATA-----TCCG-AC--TAT-AAAT-A--CA-ATT-T----TCTGAATCTT
gi|24 : actcgaaattatatgaatctatgatatatacatctgtaactgttgtaaaatcattatttaaatgtgaatttttatttattgtttATAC-TTG--CACA-A-GATT-T--AA---AAATGTATGT-GTGTG--taaaaaaagtcaat
gi|10 : ATT-T--AA---AAATGTATG---------------ATATATG-T-AC--------ATG-----TAATGA--TGT--TGT-ATAT-AT-T-ATATTTT-------T-ATA---------TA-----CC----TGTC-A------G-GGCAAA--A-GCT-CTA-C-A---GAGC-T-TATT-G-CTATT---G--TG---ATA-------ATA-----TTAA-AT--TTTCAAAT-A--AA-CTT-TTGAATCTGAA-C
gi|11 : aaattttgttgaaaactTAT-GT-TTAT-TTAT-------T-ATG---------TA--TCTTT---ATGTC-AT-G-TCG-GTCATA--A-GCT-CTA-C-A---GAGCTT-TA-T-G-TTACT---GT-TT---T-A-------ATA-----TCCG-AC--TT---AAT-AATAA-ATT-T----TCTGAA--TTCT
gi|15 : ttatcatgtaaatagggcttaataaaacgattatTGT-GT-T-AT-CCAT-------TTATGCGGGTTTTTTT--TTTCTT--ATGCC-AT-G-TCG-GTCAAA--A-GTT-CTA-C-A---Ggaa
gi|12 : aatatttcaatatttaaagatttatattt-AT-TTAT-------G-ATG---------CA--TTTTT---ATGTC-AT-GATC--GTCAGAACA-GCTACTA-CAA---GAGC-T-TA-T-G-----------------A-A-------ATC-----ACCG-ACAATAT-GAAT-A--AA-ATTGTA---TCTGAA-Ctgctcttg
gi|20 : gtattaagactttttatgttatatgatgtaata---ATTTT-AT-G-TTG-GTCAAA--A-GCT-CT---------AGC-T-TA-T------------------------------TC-----TCCG-AC--TT---GAT-A--AA-ATG-T----TCTGAA-catgaa
gi|13 : ttTC-AT-G-TTG-GTCAAA--A-GGT-CTA-C-A---GAGC-T-TA-T-G-TTACT---GTTTT---A-T-------ATA-----TCCA-AC--TAT-AAAT-A--AA-ATT-T----TCTGAA-actaaatg
gi|21 : attttttttctaatcataaC-AT-G-CTG-GTCAAA--A-GCT-CTA-A-A---GAGC-T-TA-T-G-TTACT---GTTTT---A-A-------ATA-----TCCA-AC--TTT-AAtctgagactttgacatc
gi|16 : -AT-G-TCA-TTCAAA--A-GCT-CCA-C-A---GAA--T-CA-T-A-GTATT---A---T---A-T-------GTC-----TCCA-AT--TTT-AAAT-A--AA-AAA-T----TTTGAA-TCTC
gi|17 : -G-TCG-GTAAAT--T-GCT-CTT-C-A---GAGC-T-AA-T-G-TTATTTATA--TT---G-A-------ATA-----TCCG-AC--TTT-AAAT-A--AATATT-A----TTTGAaatg
gi|19 : a-GCA-CTA-C-A---GAGC-T-TA-T-G-TTACT---G--TTTC-A-T-------GTG-----TCCG-AC--TAT-AGAT-A--AA-ATT-T----TCTAAA--TTCTtt
gi|18 : at-CTA---A---GAGC-T-TA-T-G-TTACT---G--TT---A----------------------------T-AATT-A--AA-ATT-T----TCTGAA-gaa
gi|22 : AC-T-T--T-G-TT---------TT---A-A-------ATA-----TCCA-AC--ATT-AAAT-A--AA-ATT-T----TCTGAA-Ctctgaattctgaatgatatgaaaccacc
gi|23 : tgt-G-TTACT---G--TTTT-A-A-------ATA-----TCCG-AC--TTT-AAGTCA--AA-ATT-T----TCCGAA-CTTCctgaaatttg
Alignments
lowQualScore : 1 2 1 1 1 111 1 222222 111 1 2222222 6666666666666666666666666666666666666666666666666666666666666666 1111111111111 111111111 1111111111 33333333333333333
lowQualScore : 5 0 2 0 6 77 6 0 0 1 5 6 6 6 555 1 66 5 111111 888 5 5 5 5 0 5 888 44 3 1111111 3 2 8 66 4 777 4 66 4 888888 7 9999 8 777 8 4 4 55 8 3 55 3 7 3 3 555 2222222222222222222222222222222222222222222222222222222222222222 3 444 6666666666666 555555555 3333333333 44 555 2 4 2 2 2 2 2 33 2 2 2 777 2 2 2 4 2 333 11111111111111111 55555 2 22 0 2 2 33 2 2 7777 33
lowQualScore : . . . . . .. . . . . . . . . ... . .. . ...... ... . . . . . . ... .. . ....... . . . .. . ... . .. . ...... . .... . ... . . . .. . . .. . . . . ... ................................................................ . ... ............. ......... .......... .. ... . . . . . . . .. . . . ... . . . . . ... ................. ..... . .. . . . .. . . .... ..
lowQualScore : 0 0 5 6 7 77 0 6 8 0 5 7 7 7 333 4 99 0 222222 444 0 0 1 0 0 0 888 22 2 1111111 2 1 9 11 4 888 4 11 4 000000 3 4444 9 000 0 0 0 00 0 6 00 6 3 3 3 888 9999999999999999999999999999999999999999999999999999999999999999 1 777 9999999999999 888888888 5555555555 22 000 5 7 2 2 2 2 2 11 0 0 0 000 0 0 1 0 0 777 22222222222222222 33333 1 99 5 1 4 22 4 4 4444 00
consensus : NNNNATAGTTAGGAATGCTACAAATTTAANTCAATTTTAAAAGTTTAATAAATAATTGGAATGGGG-AATCCTGTGTGTGT-NGCTCCTGCAGATCTTAGAAAAACCATCTTTCTNGAATCCTGTGTGTGTNG-CTCCTGC-A-GAT-T-TAG-AAAAC--CAT-CTTTCTTA------GTTGT-AACTGCATA-CATT-CAAAAC-TGT-AAA-CTG---ACTAATACATACATGTATTAAGTTTG-TTT--GCA-AT---TTTT-ATGATAT--GACACGGT-GAAGG--GT-CAACTTAACTGTGAT----A-TTT---TA-AA-TAAT-G-TG-CCAAATA-CTT--GCAC-AT-GAT-TT-A---AAAATGTATGT-GTATG--CAATGTA------NGT-ACTA-TA-TA--TGTA-GCTAATGATTT--T--------TAT-GT-T-AT-------------TTAT-------T-ATG----------TA--TTT---TTATGT-C-AT-G-TC-G-GTC-AAA--AGCT-CTA-C-A---GAGC-T-TA-T-G-TTACT---G--TT---A-A-------ATA-----TCCG-AC--TTT-AAAT-A--AA-ATT-T----TCTGAA-CTTCT
Reference ( family-817 ) : NNNNATAGTTAGGAATGCTACAA-TTTAACTCAATTTTAAAAGTTTAATAAATAATTGAAATGGGG-AATCCTGTGTGTGT-NGCTCCTGCAGAT-TTAGAAAAACCATCTTTCTNGAATCCTGTGTGTGTTG-CTCCTGC-A-GAT-T-TAG-AAAAC--CAT-CCTTCTTA------GTTGT-AACTGCATA-CATT-CAAAAT-TGT-AAA-CTG---ACNAATACATACATG-ATTAAGTTTG-TTT--GCA-AT---TTTT-ATGATAT--GACACGGT-GAAGG--GN-CAACTTAACTGTGAT----A-TTT---TA-AA-TAAT-G-NG-CCAAATA-CTT--GCAC-AT-GAT-TT-A---AAAATGTATGT-GTATG--CAATGTA------NGT-ACTA-T--TA--TGTA-GCTAATGATTT--T--------TAT-GT-T-AT-------------TTAT-------T-ATG----------TA--TTT---TTATGT-C-AT-G-TC-G-GTC-AAA--AGCT-CTA-C-A---GAGC-T-TA-T-G-TTACT---G--TT---A-A-------ATA-----TCCG-AC--TTT-AAAT-A--AA-ATT-T----TCTGAA-CTTCT
gi|1 : ATA-TTAGGAATGCTACAAATTTAAATCAATTT-AAAAGTTTAATAAATAATTGGAATGGGG-AATCCTGTGTGTGT-TGCTCCTGTAGATCTTAGAAAA-CCATCTTTCTNGAATCCTGTGTGTG--G-CTCCTGC-A-GATCT-TAG-AAAAT--CAT-CTTTCTTATA----GTTGT-AATTGCATA-CATT-CAAA-C-TGT-AAA-CTG---ACTAATACATACATGTATTAAGTTTG-TTT--GCA-AT---TTTT-ATGATAT--GACACGGT-GAAGG--GA-CAACTTAACTGTGAT----A-GTT---TA-AA-TAAT-A-AG-CCAAATA-CTT--GCAC-AT-GAT-TT-A---CAAATGTATGT-GTATGAACAATGTA------TGT-ACTAGTA-TA--TGTA-GCTAATGATTTACTGAA-----TAT-GT-T-AT-------------TTAT-------T-ATG----------TA--TTT---CCATGT-C-AT-G-TC-G-GTC-AAA--AGCT-CTA-C-A---GAAC-T-TA-T-G-TTACT---G--TT---A-A-------ATA-----TCCG-AC--TTT-AAAT-A--AA-ATT-T----TCTGAA-CTTCT
gi|10 : agagAT-TT-A---AAAATGTATG-----------ATATA------TGT-AC-------A--TGTA-----ATGATGT--T------------GT---AT-------------ATAT-------T-AT------------A--TTT---TTATATAC-CT-G-TCAG-GGC-AAA--AGCT-CTA-C-A---GAGC-T-TATT-G-CTATT---G--TG---ATA-------ATA-----TTAA-AT--TTTCAAAT-A--AA-CTT-TTGAATCTGAA-C
gi|11 : aaattttgttgaaaactAACGATTA--T--------TAT-GT-TTAT-------------TTAT-------T-ATG----------TA--TCT---TTATGT-C-AT-G-TC-G-GTC-ATA--AGCT-CTA-C-A---GAGCTT-TA-T-G-TTACT---GT-TT---T-A-------ATA-----TCCG-AC--TT---AAT-AATAA-ATT-T----TCTGAA--TTCT
gi|12 : ttatcatgtaaatagggcttaataaTTT--T--------TAT-GT-T-ATATGATGTAATAATTTAT-------G-ATG----------CA--TTT---TTATGT-C-AT-GATC---GTC-AGAACAGCTACTA-CAA---GAGC-T-TA-T-G-----------------A-A-------ATC-----ACCG-ACAATAT-GAAT-A--AA-ATTGTA---TCTGAA-Cgaa
gi|13 : gtattaagacT-C-AT-G-TT-G-GTC-AAA--AGGT-CTA-C-A---GAGC-T-TA-T-G-TTACT---GTTTT---A-T-------ATA-----TCCA-AC--TAT-AAAT-A--AA-ATT-T----TCTGAA-catgaa
gi|14 : attttttttctaatcataaTTA-TTC--GAATAT---ATCT-ATGATAT---ACACGGTTGAAGG--TTTCAACTTAACT-TGAT----A-TTT---TA-AA-TAAT-G-TG-CCAAATA-CTG--CCAC-AA-GAT-TT-A---GAAATGTATGT-ATtctgagactttgacatc
gi|15 : gaTT--T--------TGT-GT-T-AT-------------CCAT-------TTATGCGGGTTTTTTTT--TTC---TTATGC-C-AT-G-TC-G-GTC-AAA--AGTT-CTA-C-A---GTGC-T-
gi|16 : aatatttcaatatttaaagatttata-AT-G-TC-A-TTC-AAA--AGCT-CCA-C-A---GAA--T-CA-T-A-GTATT---A---T---A-T-------GTC-----TCCA-AT--TTT-AAAT-A--AA-AAA-T----TTTGAA-TCTCcttg
gi|17 : -G-TC-G-GTA-AAT--TGCT-CTT-C-A---GAGC-T-AA-T-G-TTATTTATA--TT---G-A-------ATA-----TCCG-AC--TTT-AAAT-A--AATATT-A----TTTGAaatg
gi|18 : a-CTA---A---GAGC-T-TA-T-G-TTACT---G--TT---A----------------------------T-AATT-A--AA-ATT-T----TCTGAA-tt
gi|19 : GCA-CTA-C-A---GAGC-T-TA-T-G-TTACT---G--TTTC-A-T-------GTG-----TCCG-AC--TAT-AGAT-A--AA-ATT-T----TCTAAA--TTCTtctgaattctgaatgatatgaaaccacc
gi|2 : atATAGTTAGGAATGCTACAA-TTTAACTCAATTTTAAAAGTTTAATAAATACTTGAAATGGGA-AATCCTGTGTGTGT-TGCTCCTGTAGAT-TTAGAAAAACCATCTTTCTgaa
gi|2 : AATCCTGTGTGTGTTG-CTCCTGT-A-GAT-T-TAGAAAAAC--CAT-CTTTCTTA------GTTGTGAATTGCATA-CATT-C-AAAC-TGTAAAA-CTG---ACT-ATACATACATGTATTAAGTTTGTTTT--GCA-AT---TTTT-ATGATAT--GACACGGT-GAGGG--AC-AAACTT-ACTGTGAT----AGTTT---TAGAA-TAAT-A-AGTCCAAATA-CTT--GCAC-ATGGAT-TT-A---CAAATGTATGTGGTATGAACAATGTT------GGTAACTAGTA-TA--TGTAGGCTAATGGCTT--TTACTGAGGTAT-GT-T-AT-------------TTAT-------T-ATG----------TA---TT---TTATGT-CGAT-G-T--G-GTC-AAA--AGCT-CTA-C-ACATGAAC-T-CA-TGG-TTACT---GGTTT---AGA-------ATA-----T-CG-AC--TTT-TAAT-A--AA-ATT-T----TCTGAA-CTTCTtagttgtgaattgcatacattcaaactgtaaaactgactatacatacatgtattaagtttgttttgcaatttttatgatatgacacggtgagggacaaacttactgtgatagttttagaataataagtccaaatacttgcacatggatttacaaatgtatgtggtatgaacaatgttggtaactagtatatgtaggctaatggcttttactgaggtatgttatttattatgtattttatgtcgatgtggtcaaaagctctacacatgaactcatggttactggtttagaatatcgacttttaataaaattttctgaacttctgaaggctaaaaggtaa
gi|20 : atagttaggaatgctacaatttaactcaattttaaaagtttaataaatacttgaaatggga---TTATTT-T-AT-G-TT-G-GTC-AAA--AGCT-CT---------AGC-T-TA-T------------------------------TC-----TCCG-AC--TT---GAT-A--AA-ATG-T----TCTGAA-gaaggctaaaaggtaa
gi|21 : -C-AT-G-CT-G-GTC-AAA--AGCT-CTA-A-A---GAGC-T-TA-T-G-TTACT---GTTTT---A-A-------ATA-----TCCA-AC--TTT-AAactaaatg
gi|22 : --TT---A-A-------ATA-----TCCA-AC--ATT-AAAT-A--AA-ATT-T----TCTGAA-C
gi|23 : tgtactttgtt-G-TTACT---G--TTTT-A-A-------ATA-----TCCG-AC--TTT-AAGTCA--AA-ATT-T----TCCGAA-CTTCctgaaatttg
gi|24 : ATA-CTT--GCAC-AA-GAT-TT-A---AAAATGTATGT-GTGTG--
gi|3 : ATAGTTAGGAATGCTACAA-TTTAACTCAATTTTAAAAGTTTAATAAATACTTGAAATGGGA-AATCCTGTGTGTGT-TGCTCCTGTAGAT-TTAGAAAAACCATCTTTCT
gi|3 : AATCCTGTGTGTGTTG-CTCCTGT-A-GAT-T-TAGAAAAAC--CAT-CTTTCTTA------GTTGTGAATTGCATA-CATT-C-AAAC-TGTAAAA-CTG---ACT-ATACATACATGTATTAAGTTTGTTTT--GCA-AT---TTTT-ATGATAT--GACACGGT-GAGGG--AC-AAACTT-ACTGTGAT----AGTTT---TAGAA-TAAT-A-AGTCCAAATA-CTT--GCAC-ATGGAT-TT-A---CAAATGTATGTGGTATGAACAATGTT------GGTAACTAGTA-TA--TGTAGGCTAATGGCTT--TTACTGAGGTAT-GT-T-AT-------------TTAT-------T-ATG----------TA---TT---TTATGT-CGAT-G-T--G-GTC-AAA--AGCT-CTA-C-ACATGAAC-T-CA-TGG-TTACT---GGTTT---AGA-------ATA-----T-CG-AC--TTT-TAAT-A--AA-ATT-T----TCTGAA-CTTCTtagttgtgaattgcatacattcaaactgtaaaactgactatacatacatgtattaagtttgttttgcaatttttatgatatgacacggtgagggacaaacttactgtgatagttttagaataataagtccaaatacttgcacatggatttacaaatgtatgtggtatgaacaatgttggtaactagtatatgtaggctaatggcttttactgaggtatgttatttattatgtattttatgtcgatgtggtcaaaagctctacacatgaactcatggttactggtttagaatatcgacttttaataaaattttctgaacttctgaaggctaaaaggtaa
gi|4 : atagttaggaatgctacaatttaactcaattttaaaagtttaataaatacttgaaatgggaAATAATTGAATCGGTGCAATCCAGTGTGTGTCGGCTCCTGCgaaggctaaaaggtaa
gi|4 : AATCCAGTGTGTGTCGGCTCCTGCCATGAT-GATAG-GCAACAGCATTCCTTCTTA------GCTGT-A-CTTTATAACATTTCGAAAT-TGT-AAAACTGTCGACAAA---ACACATG-ATTTAGTTTA-------CA-ATGTATTTT-GTAATATCCGACATGGT-GAAGG--GT-CAACTTAACTGTGATCAAAA-GTTAAATA-AA-TAATCG-TG-CCTAATACCTT--GCAC-AT-GGTGGT-ACGTAAAATGTATGT--TATGT-TAGCGTAATCTTTAAT-ATTA-TTGTA--TGTA-G-------TTT--T--------T-T-GT----T-------------TTAT-------T-AT-----------CA--TT--------------T-G-TC-G-ACCAAAA--AGCT-CTA-C-A---GAGC-T-TT-T-GTTTACT---GC-TT---A-T-------ATATATTTTCCGAAC--TAT-AATA-A--AA-ATT-T----TCTGAA-catgatgataggcaacagcattccttcttagctgtactttataacatttcgaaattgtaaaactgtcgacaaaacacatgatttagtttacaatgtattttgtaatatccgacatggtgaagggtcaacttaactgtgatcaaaagttaaataaataatcgtgcctaataccttgcacatggtggtacgtaaaatgtatgttatgttagcgtaatctttaatattattgtatgtagttttttgttttattatcatttgtcgaccaaaaagctctacagagcttttgtttactgcttatatatattttccgaactataataaaaattttctgaaatctgga
gi|5 : aataattgaatcggtgcTTTAAAAGTTTTATAAATAATTAGAATGGGG-AATCCTGTGTGTGT-GGCTCCTGCAGATCTTAG-AAAACCTTCCTTatctgga
gi|5 : aaGAATCCTGTGTGTGTGG-CTCCTGC-A-GATCT-TAG-AAAAC--CTT-CCTTATTACATGTAGTTGT-A-CTACATA-CATT-CAAAAT-TGT-AAC-CTG---ACTAATACATA------TCA----TG-TTT--GCA-AT---TTTT-ATGATAT--GACATGGT-AAAGG--GT-CAACTTAACTGTGAT----A-TTT---TA-AA-TAGT-G-TG-CCAAATA-CTT--GCAC-AT-GAT-TT-A---GAAATGTATGT-ATCTGT-CTGTGTA------CGT-A-TA-TA-TAAATGTA-GTTAAT--TTT--T--------TAG-TT-T-AT-------------TTATGTACCAGT-ATG----------TA--TTT---TTATGT-C-AT-G-TC-G-ATC-AAA--AGCT-CTA-C-A---GAGC-T-TA-T-G-CT--------------------------------TCCG-AC--TAT-AAAT-A--AA-ATT-T----TCTGAA-attacatgtagttgtactacatacattcaaaattgtaacctgactaatacatatcatgtttgcaatttttatgatatgacatggtaaagggtcaacttaactgtgatattttaaatagtgtgccaaatacttgcacatgatttagaaatgtatgtatctgtctgtgtacgtatatataaatgtagttaattttttagtttatttatgtaccagtatgtatttttatgtcatgtcgatcaaaagctctacagagcttatgcttccgactataaataaaattttctgaatctgaa
gi|6 : aatttaaaagttttataaataattagaatgggATA-TTAGGAATACTACAAATTTAAATCAATTT-AAAAGTTTAATAAATAATTGGAATGGGG-AATCCT-TGTGTGT-GGCTCCTGCAGAT-ATAG-AAAACCATCTTTCTtctgaa
gi|6 : aGAATCCT-TGTGTGTGG-CTCCTGC-A-GAT-A-TAG-AAAAC--CAT-CTTTCTTA------GTTGT-A-CTGCAT--CATT-CAAAAT-TGT-AAA-CTG---ACTAATACATA------TTA----TG-TTT--GCA-AT---TTTT-ATGATAC--GACACGGT-GAAGG--GT-CAACTTAACTGTGAT----A-TTT---TA-AA-TAAT-G-TG-CAAAATA-CTT--GCAC-AA-GAT-TTAA---AAAATGTATGT-GT-TG-----TGTA------TGC-A-------------TA-GCTGATG---T--T--------TAT-GT-T-AT-------------TTA--------T-GTA----------TT--TTT---TTATGT-C-AT-G-TC-G-GTC-AAA--AGCT-CTA-C-A---GAGC-T-TA-T-G-TTACT---G--TTTTAA-A-------ATA-----TCCG-AC--TTT-AAtagttgtactgcatcattcaaaattgtaaactgactaatacatattatgtttgcaatttttatgatacgacacggtgaagggtcaacttaactgtgatattttaaataatgtgcaaaatacttgcacaagatttaaaaaatgtatgtgttgtgtatgcatagctgatgtttatgttatttatgtatttttttatgtcatgtcggtcaaaagctctacagagcttatgttactgttttaaaatatccgactttaatgaat
gi|7 : aatattaggaatactacaaatttaaatcaatttaaaagtttaataaataattggaatgggAT-T-AAG-CAAAC--CAT-CCTTTTCA------GT-AT-GACTGCATA-CATT-CAAAAAATGT-AAA-ATG---ACAAA---ATACATA-A--AAGTATG-TTTCGGCA-AT---TTTT-ATGATAT--GACACGGT-GAAGGTTGT-ACACTT--TTG-GAT----A-TTT---TA-AATTATT-GTTG-CCAAATA-CTTAAACACAAT-GAT-TT-T---AAAA----------------AATGTA------TGT-AATG-T--TG--AATA-GCTAA--ATTT--T--------TATCGTAT-AT-------------TTAT-------G-AAG----------TA--TTTTTCTTATGT-C-ATCG-TC-GCGTC-AAA--AGCT-CTA-C-A---GAGC-TATA-T-G-Ttgaat
gi|8 : tcTT---TA-AA-TAAT-G-TA-CCAAATA-CTT--GCAG-AT-GAT-TT-A---A------------------CAATGTA-------------------A--TGTA-GCTAATG--TG--T--------TAT-GT-T-AT-------------TTATG------T-ATG----------TG--TCT---TTATGT-C-AT-G-TC-G-GTC-AAA--AGTT-CTA-C-A---GTGC-T-TA-T-G-TTACT---G--TT---ATATACATGTATA-----TCCG-AC--TAT-AAAT-A--CA-ATT-T----TCTGAATCTTatcctg
gi|9 : actcgaaattatatgaatctatgatatatacatctgtaactgttgtaaaatcattatttaaatgtgaatttttatttattgtttacaaAAAC--CAT-CTTTCTCA------GTTGT-A-CTGCATA-CATT-CAAAAT-TGT-AAA-ATG---ACAAATACATATA------AAGTATG-TTT--GCA-AT---TTTTTATGATAT--GACACGGT-GAAGG--GT-TG---TAACTTTGAT----A-TTT---TA-AA-TTTT-G-TG-CCAAATA-CTT--GCAC-AT-GAT-TT-A---AAAATGTA--T-GTATG-----TGTA------GG---CTT-T--TA----------AATA--TT--T--------TAT-GT-T-AT-------------TTAT-------GAATG----------TATTTTT---TTATGT-C-AT-G-TC-G-GTC-AAA--AGCT-CTACC-A---GAGC-T-TA-T-G-TTCCT---taaaaaaagtcaat
Alignments
lowQualScore : 1 1 1 11 11 111 1 222222 111 1 1111111 11 777777777777777777777777777777777777 11 22222222 1111111111111 111111111 1111111111 33333333333333333
lowQualScore : 5 5 1 0 6 77 6 6 88 66 6 1 3 6 6 6 555 0 66 5 111111 888 5 5 5 66 0 5 888 44 3 8888888 3 2 8 66 4 777 4 66 4 66 44 7 9999 8 777 8 4 55 4 1 3 55 3 7 3 77 555 888888888888888888888888888888888888 999 22 44 77777777 3 444 6666666666666 555555555 3333333333 44 555 2 4 2 2 2 2 2 33 2 2 2 777 2 2 2 4 2 333 11111111111111111 55555 2 22 0 2 2 33 2 2 7777 33
lowQualScore : . . . . . .. . . .. .. . . . . . . ... . .. . ...... ... . . . .. . . ... .. . ....... . . . .. . ... . .. . .. .. . .... . ... . . .. . . . .. . . . .. ... .................................... ... .. .. ........ . ... ............. ......... .......... .. ... . . . . . . . .. . . . ... . . . . . ... ................. ..... . .. . . . .. . . .... ..
lowQualScore : 0 5 0 6 7 77 7 7 55 55 7 0 3 7 7 7 333 0 99 0 222222 444 0 0 1 11 0 0 888 00 2 4444444 2 1 9 11 4 888 4 11 4 11 66 3 4444 9 000 0 0 00 0 6 6 00 6 3 3 99 888 000000000000000000000000000000000000 666 00 22 77777777 1 777 9999999999999 888888888 5555555555 22 000 5 7 2 2 2 2 2 11 0 0 0 000 0 0 1 0 0 777 22222222222222222 33333 1 99 5 1 4 22 4 4 4444 00
consensus : NNNNATAGTTAGGAATGCTACAAATTTAANTCAATTTTAAAAGTTTAATAAATAATTGGAATGGGG-AATCCTGTGTGTGT-NGCTCCTG-CA-GAT-TTAGA-AAAACCA-TCTTTCTNGAATCCTGTGTGTGTNG-CTCCTGC-A-GAT-T-TAGAAAA-C--CAT-CTTTCTTA------GTTGT-AACTGCATA-CATT-CAAAAC-TGT-AAA-CTG---ACTAATACATACATGTATTAAGTTTG-TTT--GCA-AT---TTTT-ATGATAT--GACACGGT-GAAGG--GT-CAACTTAACTGTGAT----A-TTT---TA-AA-TAAT--G-TGCCAAATA-CTT--GCAC-AT-GAT-TT--A---AAAATGTATGT-GTATG--CAATGTA------NGT-ACTA-TATA--TGTA-GCTAATGATTT--T--------TAT-GT-T-AT-------------TTAT-------T-ATG----------TA--TTT---TTATGT-C-AT-G-TC-G-GTC-AAA--AGCT-CTA-C-A---GAGC-T-TA-T-G-TTACT---G--TT---A-A-------ATA-----TCCG-AC--TTT-AAAT-A--AA-ATT-T----TCTGAA-CTTCT
Reference ( family-817 ) : NNNNATAGTTAGGAATGCTACAAATTTAANTCAATTTTAAAAGTTTAATAAATAATTGGAATGGGG-AATCCTGTGTGTGT-NGCTCCTG-CA-GATCTTAGA-AAAACCA-TCTTTCTNGAATCCTGTGTGTGTNG-CTCCTGC-A-GAT-T-TAGAAAA-C--CAT-CTTTCTTA------GTTGT-AACTGCATA-CATT-CAAAAC-TGT-AAA-CTG---ACTAATACATACATGTATTAAGTTTG-TTT--GCA-AT---TTTT-ATGATAT--GACACGGT-GAAGG--GT-CAACTTAACTGTGAT----A-TTT---TA-AA-TAAT--G-TGCCAAATA-CTT--GCAC-AT-GAT-TT--A---AAAATGTATGT-GTATG--CAATGTA------NGT-ACTA-TATA--TGTA-GCTAATGATTT--T--------TAT-GT-T-AT-------------TTAT-------T-ATG----------TA--TTT---TTATGT-C-AT-G-TC-G-GTC-AAA--AGCT-CTA-C-A---GAGC-T-TA-T-G-TTACT---G--TT---A-A-------ATA-----TCCG-AC--TTT-AAAT-A--AA-ATT-T----TCTGAA-CTTCT
gi|1 : ATA-TTAGGAATGCTACAAATTTAAATCAATTT-AAAAGTTTAATAAATAATTGGAATGGGG-AATCCTGTGTGTGT-TGCTCCTG-TA-GATCTTAGA-AAA-CCA-TCTTTCTNGAATCCTGTGTGTG--G-CTCCTGC-A-GATCT-TAGAAAA-T--CAT-CTTTCTTATA----GTTGT-AATTGCATA-CATT-CAAA-C-TGT-AAA-CTG---ACTAATACATACATGTATTAAGTTTG-TTT--GCA-AT---TTTT-ATGATAT--GACACGGT-GAAGG--GA-CAACTTAACTGTGAT----A-GTT---TA-AA-TAAT--A-AGCCAAATA-CTT--GCAC-AT-GAT-TT--A---CAAATGTATGT-GTATGAACAATGTA------TGT-ACTAGTATA--TGTA-GCTAATGATTTACTGAA-----TAT-GT-T-AT-------------TTAT-------T-ATG----------TA--TTT---CCATGT-C-AT-G-TC-G-GTC-AAA--AGCT-CTA-C-A---GAAC-T-TA-T-G-TTACT---G--TT---A-A-------ATA-----TCCG-AC--TTT-AAAT-A--AA-ATT-T----TCTGAA-CTTCT
gi|10 : agagAT-TT--A---AAAATGTATG-----------ATATA------TGT-AC------A--TGTA-----ATGATGT--T------------GT---AT-------------ATAT-------T-AT------------A--TTT---TTATATAC-CT-G-TCAG-GGC-AAA--AGCT-CTA-C-A---GAGC-T-TATT-G-CTATT---G--TG---ATA-------ATA-----TTAA-AT--TTTCAAAT-A--AA-CTT-TTGAATCTGAA-C
gi|11 : aaattttgttgaaaactAACGATTA--T--------TAT-GT-TTAT-------------TTAT-------T-ATG----------TA--TCT---TTATGT-C-AT-G-TC-G-GTC-ATA--AGCT-CTA-C-A---GAGCTT-TA-T-G-TTACT---GT-TT---T-A-------ATA-----TCCG-AC--TT---AAT-AATAA-ATT-T----TCTGAA--TTCT
gi|12 : ttatcatgtaaatagggcttaataaTTT--T--------TAT-GT-T-ATATGATGTAATAATTTAT-------G-ATG----------CA--TTT---TTATGT-C-AT-GATC---GTC-AGAACAGCTACTA-CAA---GAGC-T-TA-T-G-----------------A-A-------ATC-----ACCG-ACAATAT-GAAT-A--AA-ATTGTA---TCTGAA-Cgaa
gi|13 : gtattaagacT-C-AT-G-TT-G-GTC-AAA--AGGT-CTA-C-A---GAGC-T-TA-T-G-TTACT---GTTTT---A-T-------ATA-----TCCA-AC--TAT-AAAT-A--AA-ATT-T----TCTGAA-catgaa
gi|14 : attttttttctaatcataaTTA-TTC--GAATAT---ATCT-ATGATAT---ACACGGTTGAAGG--TTTCAACTTAACT-TGAT----A-TTT---TA-AA-TAAT--G-TGCCAAATA-CTG--CCAC-AA-GAT-TT--A---GAAATGTATGT-ATtctgagactttgacatc
gi|15 : gaTT--T--------TGT-GT-T-AT-------------CCAT-------TTATGCGGGTTTTTTTT--TTC---TTATGC-C-AT-G-TC-G-GTC-AAA--AGTT-CTA-C-A---GTGC-T-
gi|16 : aatatttcaatatttaaagatttata-AT-G-TC-A-TTC-AAA--AGCT-CCA-C-A---GAA--T-CA-T-A-GTATT---A---T---A-T-------GTC-----TCCA-AT--TTT-AAAT-A--AA-AAA-T----TTTGAA-TCTCcttg
gi|17 : -G-TC-G-GTA-AAT--TGCT-CTT-C-A---GAGC-T-AA-T-G-TTATTTATA--TT---G-A-------ATA-----TCCG-AC--TTT-AAAT-A--AATATT-A----TTTGAaatg
gi|18 : a-CTA---A---GAGC-T-TA-T-G-TTACT---G--TT---A----------------------------T-AATT-A--AA-ATT-T----TCTGAA-tt
gi|19 : GCA-CTA-C-A---GAGC-T-TA-T-G-TTACT---G--TTTC-A-T-------GTG-----TCCG-AC--TAT-AGAT-A--AA-ATT-T----TCTAAA--TTCTtctgaattctgaatgatatgaaaccacc
gi|2 : atATAGTTAGGAATGCTACAA-TTTAACTCAATTTTAAAAGTTTAATAAATACTTGAAATGGGA-AATCCTGTGTGTGT-TGCTCCTG-TA-GAT-TTAGA-AAAACCA-TCTTTCTgaa
gi|2 : AATCCTGTGTGTGTTG-CTCCTGT-A-GAT-T-TAGAAAAAC--CAT-CTTTCTTA------GTTGTGAATTGCATA-CATT-C-AAAC-TGTAAAA-CTG---ACT-ATACATACATGTATTAAGTTTGTTTT--GCA-AT---TTTT-ATGATAT--GACACGGT-GAGGG--AC-AAACTT-ACTGTGAT----AGTTT---TAGAA-TAATAAG-T-CCAAATA-CTT--GCAC-ATGGAT-TT--A---CAAATGTATGTGGTATGAACAATGTT------GGTAACTAGTATA--TGTAGGCTAATGGCTT--TTACTGAGGTAT-GT-T-AT-------------TTAT-------T-ATG----------TA---TT---TTATGT-CGAT-G-T--G-GTC-AAA--AGCT-CTA-C-ACATGAAC-T-CA-TGG-TTACT---GGTTT---AGA-------ATA-----T-CG-AC--TTT-TAAT-A--AA-ATT-T----TCTGAA-CTTCTtagttgtgaattgcatacattcaaactgtaaaactgactatacatacatgtattaagtttgttttgcaatttttatgatatgacacggtgagggacaaacttactgtgatagttttagaataataagtccaaatacttgcacatggatttacaaatgtatgtggtatgaacaatgttggtaactagtatatgtaggctaatggcttttactgaggtatgttatttattatgtattttatgtcgatgtggtcaaaagctctacacatgaactcatggttactggtttagaatatcgacttttaataaaattttctgaacttctgaaggctaaaaggtaa
gi|20 : atagttaggaatgctacaatttaactcaattttaaaagtttaataaatacttgaaatggga---TTATTT-T-AT-G-TT-G-GTC-AAA--AGCT-CT---------AGC-T-TA-T------------------------------TC-----TCCG-AC--TT---GAT-A--AA-ATG-T----TCTGAA-gaaggctaaaaggtaa
gi|21 : -C-AT-G-CT-G-GTC-AAA--AGCT-CTA-A-A---GAGC-T-TA-T-G-TTACT---GTTTT---A-A-------ATA-----TCCA-AC--TTT-AAactaaatg
gi|22 : --TT---A-A-------ATA-----TCCA-AC--ATT-AAAT-A--AA-ATT-T----TCTGAA-C
gi|23 : tgtactttgtt-G-TTACT---G--TTTT-A-A-------ATA-----TCCG-AC--TTT-AAGTCA--AA-ATT-T----TCCGAA-CTTCctgaaatttg
gi|24 : ATA-CTT--GCAC-AA-GAT-TT--A---AAAATGTATGT-GTGTG--
gi|3 : ATAGTTAGGAATGCTACAA-TTTAACTCAATTTTAAAAGTTTAATAAATACTTGAAATGGGA-AATCCTGTGTGTGT-TGCTCCTG-TA-GAT-TTAGA-AAAACCA-TCTTTCT
gi|3 : AATCCTGTGTGTGTTG-CTCCTGT-A-GAT-T-TAGAAAAAC--CAT-CTTTCTTA------GTTGTGAATTGCATA-CATT-C-AAAC-TGTAAAA-CTG---ACT-ATACATACATGTATTAAGTTTGTTTT--GCA-AT---TTTT-ATGATAT--GACACGGT-GAGGG--AC-AAACTT-ACTGTGAT----AGTTT---TAGAA-TAATAAG-T-CCAAATA-CTT--GCAC-ATGGAT-TT--A---CAAATGTATGTGGTATGAACAATGTT------GGTAACTAGTATA--TGTAGGCTAATGGCTT--TTACTGAGGTAT-GT-T-AT-------------TTAT-------T-ATG----------TA---TT---TTATGT-CGAT-G-T--G-GTC-AAA--AGCT-CTA-C-ACATGAAC-T-CA-TGG-TTACT---GGTTT---AGA-------ATA-----T-CG-AC--TTT-TAAT-A--AA-ATT-T----TCTGAA-CTTCTtagttgtgaattgcatacattcaaactgtaaaactgactatacatacatgtattaagtttgttttgcaatttttatgatatgacacggtgagggacaaacttactgtgatagttttagaataataagtccaaatacttgcacatggatttacaaatgtatgtggtatgaacaatgttggtaactagtatatgtaggctaatggcttttactgaggtatgttatttattatgtattttatgtcgatgtggtcaaaagctctacacatgaactcatggttactggtttagaatatcgacttttaataaaattttctgaacttctgaaggctaaaaggtaa
gi|4 : atagttaggaatgctacaatttaactcaattttaaaagtttaataaatacttgaaatgggaAATAATTGAATCGGTGCAATCCAGTGTGTGTCGGCTCCTGCCATGATGATAGGCAACAGCATTCCTTCTgaaggctaaaaggtaa
gi|4 : AATCCAGTGTGTGTCGGCTCCTGCCATGAT-GATAGGCAA-CAGCATTCCTTCTTA------GCTGT-A-CTTTATAACATTTCGAAAT-TGT-AAAACTGTCGACAAA---ACACATG-ATTTAGTTTA-------CA-ATGTATTTT-GTAATATCCGACATGGT-GAAGG--GT-CAACTTAACTGTGATCAAAA-GTTAAATA-AA-TAATC-G-TGCCTAATACCTT--GCAC-AT-GGTGGT--ACGTAAAATGTATGT--TATGT-TAGCGTAATCTTTAAT-ATTATTGTA--TGTA-G-------TTT--T--------T-T-GT----T-------------TTAT-------T-AT-----------CA--TT--------------T-G-TC-G-ACCAAAA--AGCT-CTA-C-A---GAGC-T-TT-T-GTTTACT---GC-TT---A-T-------ATATATTTTCCGAAC--TAT-AATA-A--AA-ATT-T----TCTGAA-tagctgtactttataacatttcgaaattgtaaaactgtcgacaaaacacatgatttagtttacaatgtattttgtaatatccgacatggtgaagggtcaacttaactgtgatcaaaagttaaataaataatcgtgcctaataccttgcacatggtggtacgtaaaatgtatgttatgttagcgtaatctttaatattattgtatgtagttttttgttttattatcatttgtcgaccaaaaagctctacagagcttttgtttactgcttatatatattttccgaactataataaaaattttctgaaatctgga
gi|5 : aataattgaatcggtgcTTTAAAAGTTTTATAAATAATTAGAATGGGG-AATCCTGTGTGTGT-GGCTCCTG-CA-GATCTTAG--AAAACCT-TCCTTatctgga
gi|5 : aaGAATCCTGTGTGTGTGG-CTCCTGC-A-GATCT-TAGAAAA-C--CTT-CCTTATTACATGTAGTTGT-A-CTACATA-CATT-CAAAAT-TGT-AAC-CTG---ACTAATACATA------TCA----TG-TTT--GCA-AT---TTTT-ATGATAT--GACATGGT-AAAGG--GT-CAACTTAACTGTGAT----A-TTT---TA-AA-TAGT--G-TGCCAAATA-CTT--GCAC-AT-GAT-TT--A---GAAATGTATGT-ATCTGT-CTGTGTA------CGT-A-TA-TATAAATGTA-GTTAAT--TTT--T--------TAG-TT-T-AT-------------TTATGTACCAGT-ATG----------TA--TTT---TTATGT-C-AT-G-TC-G-ATC-AAA--AGCT-CTA-C-A---GAGC-T-TA-T-G-CT--------------------------------TCCG-AC--TAT-AAAT-A--AA-ATT-T----TCTGAA-attacatgtagttgtactacatacattcaaaattgtaacctgactaatacatatcatgtttgcaatttttatgatatgacatggtaaagggtcaacttaactgtgatattttaaatagtgtgccaaatacttgcacatgatttagaaatgtatgtatctgtctgtgtacgtatatataaatgtagttaattttttagtttatttatgtaccagtatgtatttttatgtcatgtcgatcaaaagctctacagagcttatgcttccgactataaataaaattttctgaatctgaa
gi|6 : aatttaaaagttttataaataattagaatgggATA-TTAGGAATACTACAAATTTAAATCAATTT-AAAAGTTTAATAAATAATTGGAATGGGG-AATCCT-TGTGTGT-GGCTCCTG-CA-GATA-TAG--AAAACCA-TCTTTCTtctgaa
gi|6 : aGAATCCT-TGTGTGTGG-CTCCTGC-A-GAT-A-TAGAAAA-C--CAT-CTTTCTTA------GTTGT-A-CTGCAT--CATT-CAAAAT-TGT-AAA-CTG---ACTAATACATA------TTA----TG-TTT--GCA-AT---TTTT-ATGATAC--GACACGGT-GAAGG--GT-CAACTTAACTGTGAT----A-TTT---TA-AA-TAAT--G-TGCAAAATA-CTT--GCAC-AA-GAT-TTA-A---AAAATGTATGT-GT-TG-----TGTA------TGC-A------------TA-GCTGATG---T--T--------TAT-GT-T-AT-------------TTA--------T-GTA----------TT--TTT---TTATGT-C-AT-G-TC-G-GTC-AAA--AGCT-CTA-C-A---GAGC-T-TA-T-G-TTACT---G--TTTTAA-A-------ATA-----TCCG-AC--TTT-AAtagttgtactgcatcattcaaaattgtaaactgactaatacatattatgtttgcaatttttatgatacgacacggtgaagggtcaacttaactgtgatattttaaataatgtgcaaaatacttgcacaagatttaaaaaatgtatgtgttgtgtatgcatagctgatgtttatgttatttatgtatttttttatgtcatgtcggtcaaaagctctacagagcttatgttactgttttaaaatatccgactttaatgaat
gi|7 : aatattaggaatactacaaatttaaatcaatttaaaagtttaataaataattggaatgggAT-T-AAGCAAA-C--CAT-CCTTTTCA------GT-AT-GACTGCATA-CATT-CAAAAAATGT-AAA-ATG---ACAAA---ATACATA-A--AAGTATG-TTTCGGCA-AT---TTTT-ATGATAT--GACACGGT-GAAGGTTGT-ACACTT--TTG-GAT----A-TTT---TA-AATTATT--GTTGCCAAATA-CTTAAACACAAT-GAT-TTTAA---AAAATGTATGT---------AATGT-------TGA-A------------TA-GCTAA--ATTT--T--------TATCGTAT-AT-------------TTAT-------G-AAG----------TA--TTTTTCTTATGT-C-ATCG-TC-GCGTC-AAA--AGCT-CTA-C-A---GAGC-TATA-T-G-Ttgaat
gi|8 : tcTT---TA-AA-TAAT--G-TACCAAATA-CTT--GCAG-AT-GAT-TT--A---A------------------CAATGTA------------------A--TGTA-GCTAATG--TG--T--------TAT-GT-T-AT-------------TTATG------T-ATG----------TG--TCT---TTATGT-C-AT-G-TC-G-GTC-AAA--AGTT-CTA-C-A---GTGC-T-TA-T-G-TTACT---G--TT---ATATACATGTATA-----TCCG-AC--TAT-AAAT-A--CA-ATT-T----TCTGAATCTTatcctg
gi|9 : actcgaaattatatgaatctatgatatatacatctgtaactgttgtaaaatcattatttaaatgtgaatttttatttattgtttacaaAAA-C--CAT-CTTTCTCA------GTTGT-A-CTGCATA-CATT-CAAAAT-TGT-AAA-ATG---ACAAATACATATA------AAGTATG-TTT--GCA-AT---TTTTTATGATAT--GACACGGT-GAAGG--GT-TG---TAACTTTGAT----A-TTT---TA-AA-TTTT--G-TGCCAAATA-CTT--GCAC-AT-GAT-TT--A---AAAATGTA--T-GTATG-----TGTA------GG---CT--------TTTA----AATA--TT--T--------TAT-GT-T-AT-------------TTAT-------GAATG----------TATTTTT---TTATGT-C-AT-G-TC-G-GTC-AAA--AGCT-CTACC-A---GAGC-T-TA-T-G-TTCCT---taaaaaaagtcaat
Alignments
lowQualScore : 1 1 1 1 1 111 1 222222 111 1 1111111 11 777777777777777777777777777777777777 11 22222222 1111111111111 111111111 1111111111 33333333333333333
lowQualScore : 5 5 1 0 6 77 6 0 0 1 3 6 6 6 555 0 66 5 111111 888 5 5 5 66 0 5 888 44 3 8888888 3 2 8 66 4 777 4 66 4 66 44 7 9999 8 777 8 99 55 3 55 999 3 77 555 888888888888888888888888888888888888 999 22 44 77777777 3 444 6666666666666 555555555 3333333333 44 555 2 4 2 2 2 2 2 33 2 2 2 777 2 2 2 4 2 333 11111111111111111 55555 2 22 0 2 2 33 2 2 7777 33
lowQualScore : . . . . . .. . . . . . . . . ... . .. . ...... ... . . . .. . . ... .. . ....... . . . .. . ... . .. . .. .. . .... . ... . .. .. . .. ... . .. ... .................................... ... .. .. ........ . ... ............. ......... .......... .. ... . . . . . . . .. . . . ... . . . . . ... ................. ..... . .. . . . .. . . .... ..
lowQualScore : 0 5 0 6 7 77 0 6 8 0 3 7 7 7 333 0 99 0 222222 444 0 0 1 11 0 0 888 00 2 4444444 2 1 9 11 4 888 4 11 4 11 66 3 4444 9 000 0 00 66 6 00 000 3 99 888 000000000000000000000000000000000000 666 00 22 77777777 1 777 9999999999999 888888888 5555555555 22 000 5 7 2 2 2 2 2 11 0 0 0 000 0 0 1 0 0 777 22222222222222222 33333 1 99 5 1 4 22 4 4 4444 00
consensus : NNNNATAGTTAGGAATGCTACAAATTTAANTCAATTTTAAAAGTTTAATAAATAATTGGAATGGGG-AATCCTGTGTGTGT-NGCTCCTGCAGATCTTAGAAAAACCATCTTTCTNGAATCCTGTGTGTGTNG-CTCCTGC-A-GAT-T-TAGAAAA-C--CAT-CTTTCTTA------GTTGT-AACTGCATA-CATT-CAAAAC-TGT-AAA-CTG---ACTAATACATACATGTATTAAGTTTG-TTT--GCA-AT---TTTT-ATGATAT--GACACGGT-GAAGG--GT-CAACTTAACTGTGAT----A-TTT---TA-AATAAT--GT-GCCAAATA-CTTG--CACA-T-GAT-TT--A---AAAATGTATGT-GTATG--CAATGTA------NGT-ACTA-TATA--TGTA-GCTAATGATTT--T--------TAT-GT-T-AT-------------TTAT-------T-ATG----------TA--TTTTT---ATGT-C-AT-G-TC-G-GTC-AAA--AGCT-CTA-C-A---GAGC-T-TA-T-G-TTACT---G--TT---A-A-------ATA-----TCCG-AC--TTT-AAAT-A--AA-ATT-T----TCTGAA-CTTCT
Reference ( family-817 ) : NNNNATAGTTAGGAATGCTACAAATTTAANTCAATTTTAAAAGTTTAATAAATAATTGGAATGGGG-AATCCTGTGTGTGT-NGCTCCTGCAGAT-TTAGAAAAACCATCTTTCTNGAATCCTGTGTGTGTNG-CTCCTGC-A-GAT-T-TAGAAAA-C--CAT-CTTTCTTA------GTTGT-AACTGCATA-CATT-CAAAAC-TGT-AAA-CTG---ACTAATACATACATGTATTAAGTTTG-TTT--GCA-AT---TTTT-ATGATAT--GACACGGT-GAAGG--GT-CAACTTAACTGTGAT----A-TTT---TA-AATAAT--GT-GCCAAATA-CTTG--CACA-T-GAT-TT--A---AAAATGTATGT-GTATG--CAATGTA------NGT-ACTA-TATA--TGTA-GCTAATGATTT--T--------TAT-GT-T-AT-------------TTAT-------T-ATG----------TA--TTTTT---ATGT-C-AT-G-TC-G-GTC-AAA--AGCT-CTA-C-A---GAGC-T-TA-T-G-TTACT---G--TT---A-A-------ATA-----TCCG-AC--TTT-AAAT-A--AA-ATT-T----TCTGAA-CTTCT
gi|1 : ATA-TTAGGAATGCTACAAATTTAAATCAATTT-AAAAGTTTAATAAATAATTGGAATGGGG-AATCCTGTGTGTGT-TGCTCCTGTAGATCTTAGAAAA-CCATCTTTCTNGAATCCTGTGTGTG--G-CTCCTGC-A-GATCT-TAGAAAA-T--CAT-CTTTCTTATA----GTTGT-AATTGCATA-CATT-CAAA-C-TGT-AAA-CTG---ACTAATACATACATGTATTAAGTTTG-TTT--GCA-AT---TTTT-ATGATAT--GACACGGT-GAAGG--GA-CAACTTAACTGTGAT----A-GTT---TA-AATAAT--AA-GCCAAATA-CTTG--CACA-T-GAT-TT--A---CAAATGTATGT-GTATGAACAATGTA------TGT-ACTAGTATA--TGTA-GCTAATGATTTACTGAA-----TAT-GT-T-AT-------------TTAT-------T-ATG----------TA--TTTCC---ATGT-C-AT-G-TC-G-GTC-AAA--AGCT-CTA-C-A---GAAC-T-TA-T-G-TTACT---G--TT---A-A-------ATA-----TCCG-AC--TTT-AAAT-A--AA-ATT-T----TCTGAA-CTTCT
gi|10 : agagAT-TT--A---AAAATGTATG-----------ATATA------TGT-AC------A--TGTA-----ATGATGT--T------------GT---AT-------------ATAT-------T-AT------------A--TTTTT---ATATAC-CT-G-TCAG-GGC-AAA--AGCT-CTA-C-A---GAGC-T-TATT-G-CTATT---G--TG---ATA-------ATA-----TTAA-AT--TTTCAAAT-A--AA-CTT-TTGAATCTGAA-C
gi|11 : aaattttgttgaaaactAACGATTA--T--------TAT-GT-TTAT-------------TTAT-------T-ATG----------TA--TCTTT---ATGT-C-AT-G-TC-G-GTC-ATA--AGCT-CTA-C-A---GAGCTT-TA-T-G-TTACT---GT-TT---T-A-------ATA-----TCCG-AC--TT---AAT-AATAA-ATT-T----TCTGAA--TTCT
gi|12 : ttatcatgtaaatagggcttaataaTTT--T--------TAT-GT-T-ATATGATGTAATAATTTAT-------G-ATG----------CA--TTTTT---ATGT-C-AT-GATC---GTC-AGAACAGCTACTA-CAA---GAGC-T-TA-T-G-----------------A-A-------ATC-----ACCG-ACAATAT-GAAT-A--AA-ATTGTA---TCTGAA-Cgaa
gi|13 : gtattaagacT-C-AT-G-TT-G-GTC-AAA--AGGT-CTA-C-A---GAGC-T-TA-T-G-TTACT---GTTTT---A-T-------ATA-----TCCA-AC--TAT-AAAT-A--AA-ATT-T----TCTGAA-catgaa
gi|14 : attttttttctaatcataaTTA-TTC--GAATAT---ATCT-ATGATAT---ACACGGTTGAAGG--TTTCAACTTAACT-TGAT----A-TTT---TA-AATAAT--GT-GCCAAATA-CTGC--CACA-A-GAT-TT--A---GAAATGTATGT-ATtctgagactttgacatc
gi|15 : gaTT--T--------TGT-GT-T-AT-------------CCAT-------TTATGCGGGTTTTTTTT--TTCTT---ATGC-C-AT-G-TC-G-GTC-AAA--AGTT-CTA-C-A---GTGC-T-
gi|16 : aatatttcaatatttaaagatttata-AT-G-TC-A-TTC-AAA--AGCT-CCA-C-A---GAA--T-CA-T-A-GTATT---A---T---A-T-------GTC-----TCCA-AT--TTT-AAAT-A--AA-AAA-T----TTTGAA-TCTCcttg
gi|17 : -G-TC-G-GTA-AAT--TGCT-CTT-C-A---GAGC-T-AA-T-G-TTATTTATA--TT---G-A-------ATA-----TCCG-AC--TTT-AAAT-A--AATATT-A----TTTGAaatg
gi|18 : a-CTA---A---GAGC-T-TA-T-G-TTACT---G--TT---A----------------------------T-AATT-A--AA-ATT-T----TCTGAA-tt
gi|19 : GCA-CTA-C-A---GAGC-T-TA-T-G-TTACT---G--TTTC-A-T-------GTG-----TCCG-AC--TAT-AGAT-A--AA-ATT-T----TCTAAA--TTCTtctgaattctgaatgatatgaaaccacc
gi|2 : atATAGTTAGGAATGCTACAA-TTTAACTCAATTTTAAAAGTTTAATAAATACTTGAAATGGGA-AATCCTGTGTGTGT-TGCTCCTGTAGAT-TTAGAAAAACCATCTTTCTgaa
gi|2 : AATCCTGTGTGTGTTG-CTCCTGT-A-GAT-T-TAGAAAAAC--CAT-CTTTCTTA------GTTGTGAATTGCATA-CATT-C-AAAC-TGTAAAA-CTG---ACT-ATACATACATGTATTAAGTTTGTTTT--GCA-AT---TTTT-ATGATAT--GACACGGT-GAGGG--AC-AAACTT-ACTGTGAT----AGTTT---TAGAATAATAAGT--CCAAATA-CTTG--CACA-TGGAT-TT--A---CAAATGTATGTGGTATGAACAATGTT------GGTAACTAGTATA--TGTAGGCTAATGGCTT--TTACTGAGGTAT-GT-T-AT-------------TTAT-------T-ATG----------TA---TTTT---ATGT-CGAT-G-T--G-GTC-AAA--AGCT-CTA-C-ACATGAAC-T-CA-TGG-TTACT---GGTTT---AGA-------ATA-----T-CG-AC--TTT-TAAT-A--AA-ATT-T----TCTGAA-CTTCTtagttgtgaattgcatacattcaaactgtaaaactgactatacatacatgtattaagtttgttttgcaatttttatgatatgacacggtgagggacaaacttactgtgatagttttagaataataagtccaaatacttgcacatggatttacaaatgtatgtggtatgaacaatgttggtaactagtatatgtaggctaatggcttttactgaggtatgttatttattatgtattttatgtcgatgtggtcaaaagctctacacatgaactcatggttactggtttagaatatcgacttttaataaaattttctgaacttctgaaggctaaaaggtaa
gi|20 : atagttaggaatgctacaatttaactcaattttaaaagtttaataaatacttgaaatgggaTT---ATTT-T-AT-G-TT-G-GTC-AAA--AGCT-CT---------AGC-T-TA-T------------------------------TC-----TCCG-AC--TT---GAT-A--AA-ATG-T----TCTGAA-gaaggctaaaaggtaa
gi|21 : -C-AT-G-CT-G-GTC-AAA--AGCT-CTA-A-A---GAGC-T-TA-T-G-TTACT---GTTTT---A-A-------ATA-----TCCA-AC--TTT-AAactaaatg
gi|22 : --TT---A-A-------ATA-----TCCA-AC--ATT-AAAT-A--AA-ATT-T----TCTGAA-C
gi|23 : tgtactttgtt-G-TTACT---G--TTTT-A-A-------ATA-----TCCG-AC--TTT-AAGTCA--AA-ATT-T----TCCGAA-CTTCctgaaatttg
gi|24 : ATA-CTTG--CACA-A-GAT-TT--A---AAAATGTATGT-GTGTG--
gi|3 : ATAGTTAGGAATGCTACAA-TTTAACTCAATTTTAAAAGTTTAATAAATACTTGAAATGGGA-AATCCTGTGTGTGT-TGCTCCTGTAGAT-TTAGAAAAACCATCTTTCT
gi|3 : AATCCTGTGTGTGTTG-CTCCTGT-A-GAT-T-TAGAAAAAC--CAT-CTTTCTTA------GTTGTGAATTGCATA-CATT-C-AAAC-TGTAAAA-CTG---ACT-ATACATACATGTATTAAGTTTGTTTT--GCA-AT---TTTT-ATGATAT--GACACGGT-GAGGG--AC-AAACTT-ACTGTGAT----AGTTT---TAGAATAATAAGT--CCAAATA-CTTG--CACA-TGGAT-TT--A---CAAATGTATGTGGTATGAACAATGTT------GGTAACTAGTATA--TGTAGGCTAATGGCTT--TTACTGAGGTAT-GT-T-AT-------------TTAT-------T-ATG----------TA---TTTT---ATGT-CGAT-G-T--G-GTC-AAA--AGCT-CTA-C-ACATGAAC-T-CA-TGG-TTACT---GGTTT---AGA-------ATA-----T-CG-AC--TTT-TAAT-A--AA-ATT-T----TCTGAA-CTTCTtagttgtgaattgcatacattcaaactgtaaaactgactatacatacatgtattaagtttgttttgcaatttttatgatatgacacggtgagggacaaacttactgtgatagttttagaataataagtccaaatacttgcacatggatttacaaatgtatgtggtatgaacaatgttggtaactagtatatgtaggctaatggcttttactgaggtatgttatttattatgtattttatgtcgatgtggtcaaaagctctacacatgaactcatggttactggtttagaatatcgacttttaataaaattttctgaacttctgaaggctaaaaggtaa
gi|4 : atagttaggaatgctacaatttaactcaattttaaaagtttaataaatacttgaaatgggaAATAATTGAATCGGTGCAATCCAGTGTGTGTCGGCTCCTGCgaaggctaaaaggtaa
gi|4 : AATCCAGTGTGTGTCGGCTCCTGCCATGAT-GATAGGCAA-CAGCATTCCTTCTTA------GCTGT-A-CTTTATAACATTTCGAAAT-TGT-AAAACTGTCGACAAA---ACACATG-ATTTAGTTTA-------CA-ATGTATTTT-GTAATATCCGACATGGT-GAAGG--GT-CAACTTAACTGTGATCAAAA-GTTAAATA-AATAATC-GT-GCCTAATACCTTG--CACA-T-GGTGGT--ACGTAAAATGTATGT--TATGT-TAGCGTAATCTTTAAT-ATTATTGTA--TGTA-G-------TTT--T--------T-T-GT----T-------------TTAT-------T-AT-----------CA--TT--------------T-G-TC-G-ACCAAAA--AGCT-CTA-C-A---GAGC-T-TT-T-GTTTACT---GC-TT---A-T-------ATATATTTTCCGAAC--TAT-AATA-A--AA-ATT-T----TCTGAA-catgatgataggcaacagcattccttcttagctgtactttataacatttcgaaattgtaaaactgtcgacaaaacacatgatttagtttacaatgtattttgtaatatccgacatggtgaagggtcaacttaactgtgatcaaaagttaaataaataatcgtgcctaataccttgcacatggtggtacgtaaaatgtatgttatgttagcgtaatctttaatattattgtatgtagttttttgttttattatcatttgtcgaccaaaaagctctacagagcttttgtttactgcttatatatattttccgaactataataaaaattttctgaaatctgga
gi|5 : aataattgaatcggtgcTTTAAAAGTTTTATAAATAATTAGAATGGGG-AATCCTGTGTGTGT-GGCTCCTGCAGATCTTAG-AAAACCTTCCTTatctgga
gi|5 : aaGAATCCTGTGTGTGTGG-CTCCTGC-A-GATCT-TAGAAAA-C--CTT-CCTTATTACATGTAGTTGT-A-CTACATA-CATT-CAAAAT-TGT-AAC-CTG---ACTAATACATA------TCA----TG-TTT--GCA-AT---TTTT-ATGATAT--GACATGGT-AAAGG--GT-CAACTTAACTGTGAT----A-TTT---TA-AATAGT--GT-GCCAAATA-CTTG--CACA-T-GAT-TT--A---GAAATGTATGT-ATCTGT-CTGTGTA------CGT-A-TA-TATAAATGTA-GTTAAT--TTT--T--------TAG-TT-T-AT-------------TTATGTACCAGT-ATG----------TA--TTTTT---ATGT-C-AT-G-TC-G-ATC-AAA--AGCT-CTA-C-A---GAGC-T-TA-T-G-CT--------------------------------TCCG-AC--TAT-AAAT-A--AA-ATT-T----TCTGAA-attacatgtagttgtactacatacattcaaaattgtaacctgactaatacatatcatgtttgcaatttttatgatatgacatggtaaagggtcaacttaactgtgatattttaaatagtgtgccaaatacttgcacatgatttagaaatgtatgtatctgtctgtgtacgtatatataaatgtagttaattttttagtttatttatgtaccagtatgtatttttatgtcatgtcgatcaaaagctctacagagcttatgcttccgactataaataaaattttctgaatctgaa
gi|6 : aatttaaaagttttataaataattagaatgggATA-TTAGGAATACTACAAATTTAAATCAATTT-AAAAGTTTAATAAATAATTGGAATGGGG-AATCCT-TGTGTGT-GGCTCCTGCAGAT-ATAG-AAAACCATCTTTCTtctgaa
gi|6 : aGAATCCT-TGTGTGTGG-CTCCTGC-A-GAT-A-TAGAAAA-C--CAT-CTTTCTTA------GTTGT-A-CTGCAT--CATT-CAAAAT-TGT-AAA-CTG---ACTAATACATA------TTA----TG-TTT--GCA-AT---TTTT-ATGATAC--GACACGGT-GAAGG--GT-CAACTTAACTGTGAT----A-TTT---TA-AATAAT--GT-GCAAAATA-CTTG--CACA-A-GAT-TTA-A---AAAATGTATGT-GT-TG-----TGTA------TGC-A------------TA-GCTGATG---T--T--------TAT-GT-T-AT-------------TTA--------T-GTA----------TT--TTTTT---ATGT-C-AT-G-TC-G-GTC-AAA--AGCT-CTA-C-A---GAGC-T-TA-T-G-TTACT---G--TTTTAA-A-------ATA-----TCCG-AC--TTT-AAtagttgtactgcatcattcaaaattgtaaactgactaatacatattatgtttgcaatttttatgatacgacacggtgaagggtcaacttaactgtgatattttaaataatgtgcaaaatacttgcacaagatttaaaaaatgtatgtgttgtgtatgcatagctgatgtttatgttatttatgtatttttttatgtcatgtcggtcaaaagctctacagagcttatgttactgttttaaaatatccgactttaatgaat
gi|7 : aatattaggaatactacaaatttaaatcaatttaaaagtttaataaataattggaatgggAT-T-AAGCAAA-C--CAT-CCTTTTCA------GT-AT-GACTGCATA-CATT-CAAAAAATGT-AAA-ATG---ACAAA---ATACATA-A--AAGTATG-TTTCGGCA-AT---TTTT-ATGATAT--GACACGGT-GAAGGTTGT-ACACTT--TTG-GAT----A-TTT---TA-AATTATT-GTTGCCAAATA-CTTAAACACAAT-GAT-TTTAA---AAAATGTATGT---------AATGT-------TGA-A------------TA-GCTAA--ATTT--T--------TATCGTAT-AT-------------TTAT-------G-AAG----------TA--TTTTTCTTATGT-C-ATCG-TC-GCGTC-AAA--AGCT-CTA-C-A---GAGC-TATA-T-G-Ttgaat
gi|8 : tcTT---TA-AATAAT--GT-ACCAAATA-CTTG--CAGA-T-GAT-TT--A---A------------------CAATGTA------------------A--TGTA-GCTAATG--TG--T--------TAT-GT-T-AT-------------TTATG------T-ATG----------TG--TCTTT---ATGT-C-AT-G-TC-G-GTC-AAA--AGTT-CTA-C-A---GTGC-T-TA-T-G-TTACT---G--TT---ATATACATGTATA-----TCCG-AC--TAT-AAAT-A--CA-ATT-T----TCTGAATCTTatcctg
gi|9 : actcgaaattatatgaatctatgatatatacatctgtaactgttgtaaaatcattatttaaatgtgaatttttatttattgtttacaaAAA-C--CAT-CTTTCTCA------GTTGT-A-CTGCATA-CATT-CAAAAT-TGT-AAA-ATG---ACAAATACATATA------AAGTATG-TTT--GCA-AT---TTTTTATGATAT--GACACGGT-GAAGG--GT-TG---TAACTTTGAT----A-TTT---TA-AATTTT--GT-GCCAAATA-CTTG--CACA-T-GAT-TT--A---AAAATGTA--T-GTATG-----TGTA------GG---CT--------TTTA----AATA--TT--T--------TAT-GT-T-AT-------------TTAT-------GAATG----------TATTTTTTT---ATGT-C-AT-G-TC-G-GTC-AAA--AGCT-CTACC-A---GAGC-T-TA-T-G-TTCCT---taaaaaaagtcaat
Alignments
lowQualScore : 1 1 1 11 11 111 1 222222 111 1 1111111 11 777777777777777777777777777777777777 11 22222222 1111111111111 111111111 1111111111 33333333333333333
lowQualScore : 5 5 1 0 6 77 6 6 88 66 6 1 3 6 6 6 555 0 66 5 111111 888 5 5 5 66 0 5 888 44 3 8888888 3 2 8 66 4 777 4 66 4 66 44 7 9999 8 777 8 4 55 4 1 3 55 3 7 3 77 555 888888888888888888888888888888888888 999 22 44 77777777 3 444 6666666666666 555555555 3333333333 44 555 2 4 2 2 2 2 2 33 2 2 2 777 2 2 2 4 2 333 11111111111111111 55555 2 22 0 2 2 33 2 2 7777 33
lowQualScore : . . . . . .. . . .. .. . . . . . . ... . .. . ...... ... . . . .. . . ... .. . ....... . . . .. . ... . .. . .. .. . .... . ... . . .. . . . .. . . . .. ... .................................... ... .. .. ........ . ... ............. ......... .......... .. ... . . . . . . . .. . . . ... . . . . . ... ................. ..... . .. . . . .. . . .... ..
lowQualScore : 0 5 0 6 7 77 7 7 55 55 7 0 3 7 7 7 333 0 99 0 222222 444 0 0 1 11 0 0 888 00 2 4444444 2 1 9 11 4 888 4 11 4 11 66 3 4444 9 000 0 0 00 0 6 6 00 6 3 3 99 888 000000000000000000000000000000000000 666 00 22 77777777 1 777 9999999999999 888888888 5555555555 22 000 5 7 2 2 2 2 2 11 0 0 0 000 0 0 1 0 0 777 22222222222222222 33333 1 99 5 1 4 22 4 4 4444 00
consensus : NNNNATAGTTAGGAATGCTACAAATTTAANTCAATTTTAAAAGTTTAATAAATAATTGGAATGGGG-AATCCTGTGTGTGT-NGCTCCTG-CA-GAT-TTAGA-AAAACCA-TCTTTCTNGAATCCTGTGTGTGTNG-CTCCTGC-A-GAT-T-TAGAAAA-C--CAT-CTTTCTTA------GTTGT-AACTGCATA-CATT-CAAAAC-TGT-AAA-CTG---ACTAATACATACATGTATTAAGTTTG-TTT--GCA-AT---TTTT-ATGATAT--GACACGGT-GAAGG--GT-CAACTTAACTGTGAT----A-TTT---TA-AA-TAAT--G-TGCCAAATA-CTT--GCAC-AT-GAT-TT--A---AAAATGTATGT-GTATG--CAATGTA------NGT-ACTA-TATA--TGTA-GCTAATGATTT--T--------TAT-GT-T-AT-------------TTAT-------T-ATG----------TA--TTT---TTATGT-C-AT-G-TC-G-GTC-AAA--AGCT-CTA-C-A---GAGC-T-TA-T-G-TTACT---G--TT---A-A-------ATA-----TCCG-AC--TTT-AAAT-A--AA-ATT-T----TCTGAA-CTTCT
Reference ( family-817 ) : NNNNATAGTTAGGAATGCTACAAATTTAANTCAATTTTAAAAGTTTAATAAATAATTGGAATGGGG-AATCCTGTGTGTGT-NGCTCCTG-CA-GATCTTAGA-AAAACCA-TCTTTCTNGAATCCTGTGTGTGTNG-CTCCTGC-A-GAT-T-TAGAAAA-C--CAT-CTTTCTTA------GTTGT-AACTGCATA-CATT-CAAAAC-TGT-AAA-CTG---ACTAATACATACATGTATTAAGTTTG-TTT--GCA-AT---TTTT-ATGATAT--GACACGGT-GAAGG--GT-CAACTTAACTGTGAT----A-TTT---TA-AA-TAAT--G-TGCCAAATA-CTT--GCAC-AT-GAT-TT--A---AAAATGTATGT-GTATG--CAATGTA------NGT-ACTA-TATA--TGTA-GCTAATGATTT--T--------TAT-GT-T-AT-------------TTAT-------T-ATG----------TA--TTT---TTATGT-C-AT-G-TC-G-GTC-AAA--AGCT-CTA-C-A---GAGC-T-TA-T-G-TTACT---G--TT---A-A-------ATA-----TCCG-AC--TTT-AAAT-A--AA-ATT-T----TCTGAA-CTTCT
gi|1 : ATA-TTAGGAATGCTACAAATTTAAATCAATTT-AAAAGTTTAATAAATAATTGGAATGGGG-AATCCTGTGTGTGT-TGCTCCTG-TA-GATCTTAGA-AAA-CCA-TCTTTCTNGAATCCTGTGTGTG--G-CTCCTGC-A-GATCT-TAGAAAA-T--CAT-CTTTCTTATA----GTTGT-AATTGCATA-CATT-CAAA-C-TGT-AAA-CTG---ACTAATACATACATGTATTAAGTTTG-TTT--GCA-AT---TTTT-ATGATAT--GACACGGT-GAAGG--GA-CAACTTAACTGTGAT----A-GTT---TA-AA-TAAT--A-AGCCAAATA-CTT--GCAC-AT-GAT-TT--A---CAAATGTATGT-GTATGAACAATGTA------TGT-ACTAGTATA--TGTA-GCTAATGATTTACTGAA-----TAT-GT-T-AT-------------TTAT-------T-ATG----------TA--TTT---CCATGT-C-AT-G-TC-G-GTC-AAA--AGCT-CTA-C-A---GAAC-T-TA-T-G-TTACT---G--TT---A-A-------ATA-----TCCG-AC--TTT-AAAT-A--AA-ATT-T----TCTGAA-CTTCT
gi|10 : agagAT-TT--A---AAAATGTATG-----------ATATA------TGT-AC------A--TGTA-----ATGATGT--T------------GT---AT-------------ATAT-------T-AT------------A--TTT---TTATATAC-CT-G-TCAG-GGC-AAA--AGCT-CTA-C-A---GAGC-T-TATT-G-CTATT---G--TG---ATA-------ATA-----TTAA-AT--TTTCAAAT-A--AA-CTT-TTGAATCTGAA-C
gi|11 : aaattttgttgaaaactAACGATTA--T--------TAT-GT-TTAT-------------TTAT-------T-ATG----------TA--TCT---TTATGT-C-AT-G-TC-G-GTC-ATA--AGCT-CTA-C-A---GAGCTT-TA-T-G-TTACT---GT-TT---T-A-------ATA-----TCCG-AC--TT---AAT-AATAA-ATT-T----TCTGAA--TTCT
gi|12 : ttatcatgtaaatagggcttaataaTTT--T--------TAT-GT-T-ATATGATGTAATAATTTAT-------G-ATG----------CA--TTT---TTATGT-C-AT-GATC---GTC-AGAACAGCTACTA-CAA---GAGC-T-TA-T-G-----------------A-A-------ATC-----ACCG-ACAATAT-GAAT-A--AA-ATTGTA---TCTGAA-Cgaa
gi|13 : gtattaagacT-C-AT-G-TT-G-GTC-AAA--AGGT-CTA-C-A---GAGC-T-TA-T-G-TTACT---GTTTT---A-T-------ATA-----TCCA-AC--TAT-AAAT-A--AA-ATT-T----TCTGAA-catgaa
gi|14 : attttttttctaatcataaTTA-TTC--GAATAT---ATCT-ATGATAT---ACACGGTTGAAGG--TTTCAACTTAACT-TGAT----A-TTT---TA-AA-TAAT--G-TGCCAAATA-CTG--CCAC-AA-GAT-TT--A---GAAATGTATGT-ATtctgagactttgacatc
gi|15 : gaTT--T--------TGT-GT-T-AT-------------CCAT-------TTATGCGGGTTTTTTTT--TTC---TTATGC-C-AT-G-TC-G-GTC-AAA--AGTT-CTA-C-A---GTGC-T-
gi|16 : aatatttcaatatttaaagatttata-AT-G-TC-A-TTC-AAA--AGCT-CCA-C-A---GAA--T-CA-T-A-GTATT---A---T---A-T-------GTC-----TCCA-AT--TTT-AAAT-A--AA-AAA-T----TTTGAA-TCTCcttg
gi|17 : -G-TC-G-GTA-AAT--TGCT-CTT-C-A---GAGC-T-AA-T-G-TTATTTATA--TT---G-A-------ATA-----TCCG-AC--TTT-AAAT-A--AATATT-A----TTTGAaatg
gi|18 : a-CTA---A---GAGC-T-TA-T-G-TTACT---G--TT---A----------------------------T-AATT-A--AA-ATT-T----TCTGAA-tt
gi|19 : GCA-CTA-C-A---GAGC-T-TA-T-G-TTACT---G--TTTC-A-T-------GTG-----TCCG-AC--TAT-AGAT-A--AA-ATT-T----TCTAAA--TTCTtctgaattctgaatgatatgaaaccacc
gi|2 : atATAGTTAGGAATGCTACAA-TTTAACTCAATTTTAAAAGTTTAATAAATACTTGAAATGGGA-AATCCTGTGTGTGT-TGCTCCTG-TA-GAT-TTAGA-AAAACCA-TCTTTCTgaa
gi|2 : AATCCTGTGTGTGTTG-CTCCTGT-A-GAT-T-TAGAAAAAC--CAT-CTTTCTTA------GTTGTGAATTGCATA-CATT-C-AAAC-TGTAAAA-CTG---ACT-ATACATACATGTATTAAGTTTGTTTT--GCA-AT---TTTT-ATGATAT--GACACGGT-GAGGG--AC-AAACTT-ACTGTGAT----AGTTT---TAGAA-TAATAAG-T-CCAAATA-CTT--GCAC-ATGGAT-TT--A---CAAATGTATGTGGTATGAACAATGTT------GGTAACTAGTATA--TGTAGGCTAATGGCTT--TTACTGAGGTAT-GT-T-AT-------------TTAT-------T-ATG----------TA---TT---TTATGT-CGAT-G-T--G-GTC-AAA--AGCT-CTA-C-ACATGAAC-T-CA-TGG-TTACT---GGTTT---AGA-------ATA-----T-CG-AC--TTT-TAAT-A--AA-ATT-T----TCTGAA-CTTCTtagttgtgaattgcatacattcaaactgtaaaactgactatacatacatgtattaagtttgttttgcaatttttatgatatgacacggtgagggacaaacttactgtgatagttttagaataataagtccaaatacttgcacatggatttacaaatgtatgtggtatgaacaatgttggtaactagtatatgtaggctaatggcttttactgaggtatgttatttattatgtattttatgtcgatgtggtcaaaagctctacacatgaactcatggttactggtttagaatatcgacttttaataaaattttctgaacttctgaaggctaaaaggtaa
gi|20 : atagttaggaatgctacaatttaactcaattttaaaagtttaataaatacttgaaatggga---TTATTT-T-AT-G-TT-G-GTC-AAA--AGCT-CT---------AGC-T-TA-T------------------------------TC-----TCCG-AC--TT---GAT-A--AA-ATG-T----TCTGAA-gaaggctaaaaggtaa
gi|21 : -C-AT-G-CT-G-GTC-AAA--AGCT-CTA-A-A---GAGC-T-TA-T-G-TTACT---GTTTT---A-A-------ATA-----TCCA-AC--TTT-AAactaaatg
gi|22 : --TT---A-A-------ATA-----TCCA-AC--ATT-AAAT-A--AA-ATT-T----TCTGAA-C
gi|23 : tgtactttgtt-G-TTACT---G--TTTT-A-A-------ATA-----TCCG-AC--TTT-AAGTCA--AA-ATT-T----TCCGAA-CTTCctgaaatttg
gi|24 : ATA-CTT--GCAC-AA-GAT-TT--A---AAAATGTATGT-GTGTG--
gi|3 : ATAGTTAGGAATGCTACAA-TTTAACTCAATTTTAAAAGTTTAATAAATACTTGAAATGGGA-AATCCTGTGTGTGT-TGCTCCTG-TA-GAT-TTAGA-AAAACCA-TCTTTCT
gi|3 : AATCCTGTGTGTGTTG-CTCCTGT-A-GAT-T-TAGAAAAAC--CAT-CTTTCTTA------GTTGTGAATTGCATA-CATT-C-AAAC-TGTAAAA-CTG---ACT-ATACATACATGTATTAAGTTTGTTTT--GCA-AT---TTTT-ATGATAT--GACACGGT-GAGGG--AC-AAACTT-ACTGTGAT----AGTTT---TAGAA-TAATAAG-T-CCAAATA-CTT--GCAC-ATGGAT-TT--A---CAAATGTATGTGGTATGAACAATGTT------GGTAACTAGTATA--TGTAGGCTAATGGCTT--TTACTGAGGTAT-GT-T-AT-------------TTAT-------T-ATG----------TA---TT---TTATGT-CGAT-G-T--G-GTC-AAA--AGCT-CTA-C-ACATGAAC-T-CA-TGG-TTACT---GGTTT---AGA-------ATA-----T-CG-AC--TTT-TAAT-A--AA-ATT-T----TCTGAA-CTTCTtagttgtgaattgcatacattcaaactgtaaaactgactatacatacatgtattaagtttgttttgcaatttttatgatatgacacggtgagggacaaacttactgtgatagttttagaataataagtccaaatacttgcacatggatttacaaatgtatgtggtatgaacaatgttggtaactagtatatgtaggctaatggcttttactgaggtatgttatttattatgtattttatgtcgatgtggtcaaaagctctacacatgaactcatggttactggtttagaatatcgacttttaataaaattttctgaacttctgaaggctaaaaggtaa
gi|4 : atagttaggaatgctacaatttaactcaattttaaaagtttaataaatacttgaaatgggaAATAATTGAATCGGTGCAATCCAGTGTGTGTCGGCTCCTGCCATGATGATAGGCAACAGCATTCCTTCTgaaggctaaaaggtaa
gi|4 : AATCCAGTGTGTGTCGGCTCCTGCCATGAT-GATAGGCAA-CAGCATTCCTTCTTA------GCTGT-A-CTTTATAACATTTCGAAAT-TGT-AAAACTGTCGACAAA---ACACATG-ATTTAGTTTA-------CA-ATGTATTTT-GTAATATCCGACATGGT-GAAGG--GT-CAACTTAACTGTGATCAAAA-GTTAAATA-AA-TAATC-G-TGCCTAATACCTT--GCAC-AT-GGTGGT--ACGTAAAATGTATGT--TATGT-TAGCGTAATCTTTAAT-ATTATTGTA--TGTA-G-------TTT--T--------T-T-GT----T-------------TTAT-------T-AT-----------CA--TT--------------T-G-TC-G-ACCAAAA--AGCT-CTA-C-A---GAGC-T-TT-T-GTTTACT---GC-TT---A-T-------ATATATTTTCCGAAC--TAT-AATA-A--AA-ATT-T----TCTGAA-tagctgtactttataacatttcgaaattgtaaaactgtcgacaaaacacatgatttagtttacaatgtattttgtaatatccgacatggtgaagggtcaacttaactgtgatcaaaagttaaataaataatcgtgcctaataccttgcacatggtggtacgtaaaatgtatgttatgttagcgtaatctttaatattattgtatgtagttttttgttttattatcatttgtcgaccaaaaagctctacagagcttttgtttactgcttatatatattttccgaactataataaaaattttctgaaatctgga
gi|5 : aataattgaatcggtgcTTTAAAAGTTTTATAAATAATTAGAATGGGG-AATCCTGTGTGTGT-GGCTCCTG-CA-GATCTTAG--AAAACCT-TCCTTatctgga
gi|5 : aaGAATCCTGTGTGTGTGG-CTCCTGC-A-GATCT-TAGAAAA-C--CTT-CCTTATTACATGTAGTTGT-A-CTACATA-CATT-CAAAAT-TGT-AAC-CTG---ACTAATACATA------TCA----TG-TTT--GCA-AT---TTTT-ATGATAT--GACATGGT-AAAGG--GT-CAACTTAACTGTGAT----A-TTT---TA-AA-TAGT--G-TGCCAAATA-CTT--GCAC-AT-GAT-TT--A---GAAATGTATGT-ATCTGT-CTGTGTA------CGT-A-TA-TATAAATGTA-GTTAAT--TTT--T--------TAG-TT-T-AT-------------TTATGTACCAGT-ATG----------TA--TTT---TTATGT-C-AT-G-TC-G-ATC-AAA--AGCT-CTA-C-A---GAGC-T-TA-T-G-CT--------------------------------TCCG-AC--TAT-AAAT-A--AA-ATT-T----TCTGAA-attacatgtagttgtactacatacattcaaaattgtaacctgactaatacatatcatgtttgcaatttttatgatatgacatggtaaagggtcaacttaactgtgatattttaaatagtgtgccaaatacttgcacatgatttagaaatgtatgtatctgtctgtgtacgtatatataaatgtagttaattttttagtttatttatgtaccagtatgtatttttatgtcatgtcgatcaaaagctctacagagcttatgcttccgactataaataaaattttctgaatctgaa
gi|6 : aatttaaaagttttataaataattagaatgggATA-TTAGGAATACTACAAATTTAAATCAATTT-AAAAGTTTAATAAATAATTGGAATGGGG-AATCCT-TGTGTGT-GGCTCCTG-CA-GATA-TAG--AAAACCA-TCTTTCTtctgaa
gi|6 : aGAATCCT-TGTGTGTGG-CTCCTGC-A-GAT-A-TAGAAAA-C--CAT-CTTTCTTA------GTTGT-A-CTGCAT--CATT-CAAAAT-TGT-AAA-CTG---ACTAATACATA------TTA----TG-TTT--GCA-AT---TTTT-ATGATAC--GACACGGT-GAAGG--GT-CAACTTAACTGTGAT----A-TTT---TA-AA-TAAT--G-TGCAAAATA-CTT--GCAC-AA-GAT-TTA-A---AAAATGTATGT-GT-TG-----TGTA------TGC-A------------TA-GCTGATG---T--T--------TAT-GT-T-AT-------------TTA--------T-GTA----------TT--TTT---TTATGT-C-AT-G-TC-G-GTC-AAA--AGCT-CTA-C-A---GAGC-T-TA-T-G-TTACT---G--TTTTAA-A-------ATA-----TCCG-AC--TTT-AAtagttgtactgcatcattcaaaattgtaaactgactaatacatattatgtttgcaatttttatgatacgacacggtgaagggtcaacttaactgtgatattttaaataatgtgcaaaatacttgcacaagatttaaaaaatgtatgtgttgtgtatgcatagctgatgtttatgttatttatgtatttttttatgtcatgtcggtcaaaagctctacagagcttatgttactgttttaaaatatccgactttaatgaat
gi|7 : aatattaggaatactacaaatttaaatcaatttaaaagtttaataaataattggaatgggAT-T-AAGCAAA-C--CAT-CCTTTTCA------GT-AT-GACTGCATA-CATT-CAAAAAATGT-AAA-ATG---ACAAA---ATACATA-A--AAGTATG-TTTCGGCA-AT---TTTT-ATGATAT--GACACGGT-GAAGGTTGT-ACACTT--TTG-GAT----A-TTT---TA-AATTATT--GTTGCCAAATA-CTTAAACACAAT-GAT-TTTAA---AAAATGTATGT---------AATGT-------TGA-A------------TA-GCTAA--ATTT--T--------TATCGTAT-AT-------------TTAT-------G-AAG----------TA--TTTTTCTTATGT-C-ATCG-TC-GCGTC-AAA--AGCT-CTA-C-A---GAGC-TATA-T-G-Ttgaat
gi|8 : tcTT---TA-AA-TAAT--G-TACCAAATA-CTT--GCAG-AT-GAT-TT--A---A------------------CAATGTA------------------A--TGTA-GCTAATG--TG--T--------TAT-GT-T-AT-------------TTATG------T-ATG----------TG--TCT---TTATGT-C-AT-G-TC-G-GTC-AAA--AGTT-CTA-C-A---GTGC-T-TA-T-G-TTACT---G--TT---ATATACATGTATA-----TCCG-AC--TAT-AAAT-A--CA-ATT-T----TCTGAATCTTatcctg
gi|9 : actcgaaattatatgaatctatgatatatacatctgtaactgttgtaaaatcattatttaaatgtgaatttttatttattgtttacaaAAA-C--CAT-CTTTCTCA------GTTGT-A-CTGCATA-CATT-CAAAAT-TGT-AAA-ATG---ACAAATACATATA------AAGTATG-TTT--GCA-AT---TTTTTATGATAT--GACACGGT-GAAGG--GT-TG---TAACTTTGAT----A-TTT---TA-AA-TTTT--G-TGCCAAATA-CTT--GCAC-AT-GAT-TT--A---AAAATGTA--T-GTATG-----TGTA------GG---CT--------TTTA----AATA--TT--T--------TAT-GT-T-AT-------------TTAT-------GAATG----------TATTTTT---TTATGT-C-AT-G-TC-G-GTC-AAA--AGCT-CTACC-A---GAGC-T-TA-T-G-TTCCT---taaaaaaagtcaat
Alignments
lowQualScore : 1 1 1 1 1 111 1 222222 111 1 1111111 11 777777777777777777777777777777777777 11 22222222 1111111111111 111111111 1111111111 33333333333333333
lowQualScore : 5 5 1 0 6 77 6 0 0 1 3 6 6 6 555 0 66 5 111111 888 5 5 5 66 0 5 888 44 3 8888888 3 2 8 66 4 777 4 66 4 66 44 7 9999 8 777 8 99 55 3 55 999 3 77 555 888888888888888888888888888888888888 999 22 44 77777777 3 444 6666666666666 555555555 3333333333 44 555 2 4 2 2 2 2 2 33 2 2 2 777 2 2 2 4 2 333 11111111111111111 55555 2 22 0 2 2 33 2 2 7777 33
lowQualScore : . . . . . .. . . . . . . . . ... . .. . ...... ... . . . .. . . ... .. . ....... . . . .. . ... . .. . .. .. . .... . ... . .. .. . .. ... . .. ... .................................... ... .. .. ........ . ... ............. ......... .......... .. ... . . . . . . . .. . . . ... . . . . . ... ................. ..... . .. . . . .. . . .... ..
lowQualScore : 0 5 0 6 7 77 0 6 8 0 3 7 7 7 333 0 99 0 222222 444 0 0 1 11 0 0 888 00 2 4444444 2 1 9 11 4 888 4 11 4 11 66 3 4444 9 000 0 00 66 6 00 000 3 99 888 000000000000000000000000000000000000 666 00 22 77777777 1 777 9999999999999 888888888 5555555555 22 000 5 7 2 2 2 2 2 11 0 0 0 000 0 0 1 0 0 777 22222222222222222 33333 1 99 5 1 4 22 4 4 4444 00
consensus : NNNNATAGTTAGGAATGCTACAAATTTAANTCAATTTTAAAAGTTTAATAAATAATTGGAATGGGG-AATCCTGTGTGTGT-NGCTCCTGCAGATCTTAGAAAAACCATCTTTCTNGAATCCTGTGTGTGTNG-CTCCTGC-A-GAT-T-TAGAAAA-C--CAT-CTTTCTTA------GTTGT-AACTGCATA-CATT-CAAAAC-TGT-AAA-CTG---ACTAATACATACATGTATTAAGTTTG-TTT--GCA-AT---TTTT-ATGATAT--GACACGGT-GAAGG--GT-CAACTTAACTGTGAT----A-TTT---TA-AATAAT--GT-GCCAAATA-CTTG--CACA-T-GAT-TT--A---AAAATGTATGT-GTATG--CAATGTA------NGT-ACTA-TATA--TGTA-GCTAATGATTT--T--------TAT-GT-T-AT-------------TTAT-------T-ATG----------TA--TTTTT---ATGT-C-AT-G-TC-G-GTC-AAA--AGCT-CTA-C-A---GAGC-T-TA-T-G-TTACT---G--TT---A-A-------ATA-----TCCG-AC--TTT-AAAT-A--AA-ATT-T----TCTGAA-CTTCT
Reference ( family-817 ) : NNNNATAGTTAGGAATGCTACAAATTTAANTCAATTTTAAAAGTTTAATAAATAATTGGAATGGGG-AATCCTGTGTGTGT-NGCTCCTGCAGAT-TTAGAAAAACCATCTTTCTNGAATCCTGTGTGTGTNG-CTCCTGC-A-GAT-T-TAGAAAA-C--CAT-CTTTCTTA------GTTGT-AACTGCATA-CATT-CAAAAC-TGT-AAA-CTG---ACTAATACATACATGTATTAAGTTTG-TTT--GCA-AT---TTTT-ATGATAT--GACACGGT-GAAGG--GT-CAACTTAACTGTGAT----A-TTT---TA-AATAAT--GT-GCCAAATA-CTTG--CACA-T-GAT-TT--A---AAAATGTATGT-GTATG--CAATGTA------NGT-ACTA-TATA--TGTA-GCTAATGATTT--T--------TAT-GT-T-AT-------------TTAT-------T-ATG----------TA--TTTTT---ATGT-C-AT-G-TC-G-GTC-AAA--AGCT-CTA-C-A---GAGC-T-TA-T-G-TTACT---G--TT---A-A-------ATA-----TCCG-AC--TTT-AAAT-A--AA-ATT-T----TCTGAA-CTTCT
gi|1 : ATA-TTAGGAATGCTACAAATTTAAATCAATTT-AAAAGTTTAATAAATAATTGGAATGGGG-AATCCTGTGTGTGT-TGCTCCTGTAGATCTTAGAAAA-CCATCTTTCTNGAATCCTGTGTGTG--G-CTCCTGC-A-GATCT-TAGAAAA-T--CAT-CTTTCTTATA----GTTGT-AATTGCATA-CATT-CAAA-C-TGT-AAA-CTG---ACTAATACATACATGTATTAAGTTTG-TTT--GCA-AT---TTTT-ATGATAT--GACACGGT-GAAGG--GA-CAACTTAACTGTGAT----A-GTT---TA-AATAAT--AA-GCCAAATA-CTTG--CACA-T-GAT-TT--A---CAAATGTATGT-GTATGAACAATGTA------TGT-ACTAGTATA--TGTA-GCTAATGATTTACTGAA-----TAT-GT-T-AT-------------TTAT-------T-ATG----------TA--TTTCC---ATGT-C-AT-G-TC-G-GTC-AAA--AGCT-CTA-C-A---GAAC-T-TA-T-G-TTACT---G--TT---A-A-------ATA-----TCCG-AC--TTT-AAAT-A--AA-ATT-T----TCTGAA-CTTCT
gi|10 : agagAT-TT--A---AAAATGTATG-----------ATATA------TGT-AC------A--TGTA-----ATGATGT--T------------GT---AT-------------ATAT-------T-AT------------A--TTTTT---ATATAC-CT-G-TCAG-GGC-AAA--AGCT-CTA-C-A---GAGC-T-TATT-G-CTATT---G--TG---ATA-------ATA-----TTAA-AT--TTTCAAAT-A--AA-CTT-TTGAATCTGAA-C
gi|11 : aaattttgttgaaaactAACGATTA--T--------TAT-GT-TTAT-------------TTAT-------T-ATG----------TA--TCTTT---ATGT-C-AT-G-TC-G-GTC-ATA--AGCT-CTA-C-A---GAGCTT-TA-T-G-TTACT---GT-TT---T-A-------ATA-----TCCG-AC--TT---AAT-AATAA-ATT-T----TCTGAA--TTCT
gi|12 : ttatcatgtaaatagggcttaataaTTT--T--------TAT-GT-T-ATATGATGTAATAATTTAT-------G-ATG----------CA--TTTTT---ATGT-C-AT-GATC---GTC-AGAACAGCTACTA-CAA---GAGC-T-TA-T-G-----------------A-A-------ATC-----ACCG-ACAATAT-GAAT-A--AA-ATTGTA---TCTGAA-Cgaa
gi|13 : gtattaagacT-C-AT-G-TT-G-GTC-AAA--AGGT-CTA-C-A---GAGC-T-TA-T-G-TTACT---GTTTT---A-T-------ATA-----TCCA-AC--TAT-AAAT-A--AA-ATT-T----TCTGAA-catgaa
gi|14 : attttttttctaatcataaTTA-TTC--GAATAT---ATCT-ATGATAT---ACACGGTTGAAGG--TTTCAACTTAACT-TGAT----A-TTT---TA-AATAAT--GT-GCCAAATA-CTGC--CACA-A-GAT-TT--A---GAAATGTATGT-ATtctgagactttgacatc
gi|15 : gaTT--T--------TGT-GT-T-AT-------------CCAT-------TTATGCGGGTTTTTTTT--TTCTT---ATGC-C-AT-G-TC-G-GTC-AAA--AGTT-CTA-C-A---GTGC-T-
gi|16 : aatatttcaatatttaaagatttata-AT-G-TC-A-TTC-AAA--AGCT-CCA-C-A---GAA--T-CA-T-A-GTATT---A---T---A-T-------GTC-----TCCA-AT--TTT-AAAT-A--AA-AAA-T----TTTGAA-TCTCcttg
gi|17 : -G-TC-G-GTA-AAT--TGCT-CTT-C-A---GAGC-T-AA-T-G-TTATTTATA--TT---G-A-------ATA-----TCCG-AC--TTT-AAAT-A--AATATT-A----TTTGAaatg
gi|18 : a-CTA---A---GAGC-T-TA-T-G-TTACT---G--TT---A----------------------------T-AATT-A--AA-ATT-T----TCTGAA-tt
gi|19 : GCA-CTA-C-A---GAGC-T-TA-T-G-TTACT---G--TTTC-A-T-------GTG-----TCCG-AC--TAT-AGAT-A--AA-ATT-T----TCTAAA--TTCTtctgaattctgaatgatatgaaaccacc
gi|2 : atATAGTTAGGAATGCTACAA-TTTAACTCAATTTTAAAAGTTTAATAAATACTTGAAATGGGA-AATCCTGTGTGTGT-TGCTCCTGTAGAT-TTAGAAAAACCATCTTTCTgaa
gi|2 : AATCCTGTGTGTGTTG-CTCCTGT-A-GAT-T-TAGAAAAAC--CAT-CTTTCTTA------GTTGTGAATTGCATA-CATT-C-AAAC-TGTAAAA-CTG---ACT-ATACATACATGTATTAAGTTTGTTTT--GCA-AT---TTTT-ATGATAT--GACACGGT-GAGGG--AC-AAACTT-ACTGTGAT----AGTTT---TAGAATAATAAGT--CCAAATA-CTTG--CACA-TGGAT-TT--A---CAAATGTATGTGGTATGAACAATGTT------GGTAACTAGTATA--TGTAGGCTAATGGCTT--TTACTGAGGTAT-GT-T-AT-------------TTAT-------T-ATG----------TA---TTTT---ATGT-CGAT-G-T--G-GTC-AAA--AGCT-CTA-C-ACATGAAC-T-CA-TGG-TTACT---GGTTT---AGA-------ATA-----T-CG-AC--TTT-TAAT-A--AA-ATT-T----TCTGAA-CTTCTtagttgtgaattgcatacattcaaactgtaaaactgactatacatacatgtattaagtttgttttgcaatttttatgatatgacacggtgagggacaaacttactgtgatagttttagaataataagtccaaatacttgcacatggatttacaaatgtatgtggtatgaacaatgttggtaactagtatatgtaggctaatggcttttactgaggtatgttatttattatgtattttatgtcgatgtggtcaaaagctctacacatgaactcatggttactggtttagaatatcgacttttaataaaattttctgaacttctgaaggctaaaaggtaa
gi|20 : atagttaggaatgctacaatttaactcaattttaaaagtttaataaatacttgaaatgggaTT---ATTT-T-AT-G-TT-G-GTC-AAA--AGCT-CT---------AGC-T-TA-T------------------------------TC-----TCCG-AC--TT---GAT-A--AA-ATG-T----TCTGAA-gaaggctaaaaggtaa
gi|21 : -C-AT-G-CT-G-GTC-AAA--AGCT-CTA-A-A---GAGC-T-TA-T-G-TTACT---GTTTT---A-A-------ATA-----TCCA-AC--TTT-AAactaaatg
gi|22 : --TT---A-A-------ATA-----TCCA-AC--ATT-AAAT-A--AA-ATT-T----TCTGAA-C
gi|23 : tgtactttgtt-G-TTACT---G--TTTT-A-A-------ATA-----TCCG-AC--TTT-AAGTCA--AA-ATT-T----TCCGAA-CTTCctgaaatttg
gi|24 : ATA-CTTG--CACA-A-GAT-TT--A---AAAATGTATGT-GTGTG--
gi|3 : ATAGTTAGGAATGCTACAA-TTTAACTCAATTTTAAAAGTTTAATAAATACTTGAAATGGGA-AATCCTGTGTGTGT-TGCTCCTGTAGAT-TTAGAAAAACCATCTTTCT
gi|3 : AATCCTGTGTGTGTTG-CTCCTGT-A-GAT-T-TAGAAAAAC--CAT-CTTTCTTA------GTTGTGAATTGCATA-CATT-C-AAAC-TGTAAAA-CTG---ACT-ATACATACATGTATTAAGTTTGTTTT--GCA-AT---TTTT-ATGATAT--GACACGGT-GAGGG--AC-AAACTT-ACTGTGAT----AGTTT---TAGAATAATAAGT--CCAAATA-CTTG--CACA-TGGAT-TT--A---CAAATGTATGTGGTATGAACAATGTT------GGTAACTAGTATA--TGTAGGCTAATGGCTT--TTACTGAGGTAT-GT-T-AT-------------TTAT-------T-ATG----------TA---TTTT---ATGT-CGAT-G-T--G-GTC-AAA--AGCT-CTA-C-ACATGAAC-T-CA-TGG-TTACT---GGTTT---AGA-------ATA-----T-CG-AC--TTT-TAAT-A--AA-ATT-T----TCTGAA-CTTCTtagttgtgaattgcatacattcaaactgtaaaactgactatacatacatgtattaagtttgttttgcaatttttatgatatgacacggtgagggacaaacttactgtgatagttttagaataataagtccaaatacttgcacatggatttacaaatgtatgtggtatgaacaatgttggtaactagtatatgtaggctaatggcttttactgaggtatgttatttattatgtattttatgtcgatgtggtcaaaagctctacacatgaactcatggttactggtttagaatatcgacttttaataaaattttctgaacttctgaaggctaaaaggtaa
gi|4 : atagttaggaatgctacaatttaactcaattttaaaagtttaataaatacttgaaatgggaAATAATTGAATCGGTGCAATCCAGTGTGTGTCGGCTCCTGCgaaggctaaaaggtaa
gi|4 : AATCCAGTGTGTGTCGGCTCCTGCCATGAT-GATAGGCAA-CAGCATTCCTTCTTA------GCTGT-A-CTTTATAACATTTCGAAAT-TGT-AAAACTGTCGACAAA---ACACATG-ATTTAGTTTA-------CA-ATGTATTTT-GTAATATCCGACATGGT-GAAGG--GT-CAACTTAACTGTGATCAAAA-GTTAAATA-AATAATC-GT-GCCTAATACCTTG--CACA-T-GGTGGT--ACGTAAAATGTATGT--TATGT-TAGCGTAATCTTTAAT-ATTATTGTA--TGTA-G-------TTT--T--------T-T-GT----T-------------TTAT-------T-AT-----------CA--TT--------------T-G-TC-G-ACCAAAA--AGCT-CTA-C-A---GAGC-T-TT-T-GTTTACT---GC-TT---A-T-------ATATATTTTCCGAAC--TAT-AATA-A--AA-ATT-T----TCTGAA-catgatgataggcaacagcattccttcttagctgtactttataacatttcgaaattgtaaaactgtcgacaaaacacatgatttagtttacaatgtattttgtaatatccgacatggtgaagggtcaacttaactgtgatcaaaagttaaataaataatcgtgcctaataccttgcacatggtggtacgtaaaatgtatgttatgttagcgtaatctttaatattattgtatgtagttttttgttttattatcatttgtcgaccaaaaagctctacagagcttttgtttactgcttatatatattttccgaactataataaaaattttctgaaatctgga
gi|5 : aataattgaatcggtgcTTTAAAAGTTTTATAAATAATTAGAATGGGG-AATCCTGTGTGTGT-GGCTCCTGCAGATCTTAG-AAAACCTTCCTTatctgga
gi|5 : aaGAATCCTGTGTGTGTGG-CTCCTGC-A-GATCT-TAGAAAA-C--CTT-CCTTATTACATGTAGTTGT-A-CTACATA-CATT-CAAAAT-TGT-AAC-CTG---ACTAATACATA------TCA----TG-TTT--GCA-AT---TTTT-ATGATAT--GACATGGT-AAAGG--GT-CAACTTAACTGTGAT----A-TTT---TA-AATAGT--GT-GCCAAATA-CTTG--CACA-T-GAT-TT--A---GAAATGTATGT-ATCTGT-CTGTGTA------CGT-A-TA-TATAAATGTA-GTTAAT--TTT--T--------TAG-TT-T-AT-------------TTATGTACCAGT-ATG----------TA--TTTTT---ATGT-C-AT-G-TC-G-ATC-AAA--AGCT-CTA-C-A---GAGC-T-TA-T-G-CT--------------------------------TCCG-AC--TAT-AAAT-A--AA-ATT-T----TCTGAA-attacatgtagttgtactacatacattcaaaattgtaacctgactaatacatatcatgtttgcaatttttatgatatgacatggtaaagggtcaacttaactgtgatattttaaatagtgtgccaaatacttgcacatgatttagaaatgtatgtatctgtctgtgtacgtatatataaatgtagttaattttttagtttatttatgtaccagtatgtatttttatgtcatgtcgatcaaaagctctacagagcttatgcttccgactataaataaaattttctgaatctgaa
gi|6 : aatttaaaagttttataaataattagaatgggATA-TTAGGAATACTACAAATTTAAATCAATTT-AAAAGTTTAATAAATAATTGGAATGGGG-AATCCT-TGTGTGT-GGCTCCTGCAGAT-ATAG-AAAACCATCTTTCTtctgaa
gi|6 : aGAATCCT-TGTGTGTGG-CTCCTGC-A-GAT-A-TAGAAAA-C--CAT-CTTTCTTA------GTTGT-A-CTGCAT--CATT-CAAAAT-TGT-AAA-CTG---ACTAATACATA------TTA----TG-TTT--GCA-AT---TTTT-ATGATAC--GACACGGT-GAAGG--GT-CAACTTAACTGTGAT----A-TTT---TA-AATAAT--GT-GCAAAATA-CTTG--CACA-A-GAT-TTA-A---AAAATGTATGT-GT-TG-----TGTA------TGC-A------------TA-GCTGATG---T--T--------TAT-GT-T-AT-------------TTA--------T-GTA----------TT--TTTTT---ATGT-C-AT-G-TC-G-GTC-AAA--AGCT-CTA-C-A---GAGC-T-TA-T-G-TTACT---G--TTTTAA-A-------ATA-----TCCG-AC--TTT-AAtagttgtactgcatcattcaaaattgtaaactgactaatacatattatgtttgcaatttttatgatacgacacggtgaagggtcaacttaactgtgatattttaaataatgtgcaaaatacttgcacaagatttaaaaaatgtatgtgttgtgtatgcatagctgatgtttatgttatttatgtatttttttatgtcatgtcggtcaaaagctctacagagcttatgttactgttttaaaatatccgactttaatgaat
gi|7 : aatattaggaatactacaaatttaaatcaatttaaaagtttaataaataattggaatgggAT-T-AAGCAAA-C--CAT-CCTTTTCA------GT-AT-GACTGCATA-CATT-CAAAAAATGT-AAA-ATG---ACAAA---ATACATA-A--AAGTATG-TTTCGGCA-AT---TTTT-ATGATAT--GACACGGT-GAAGGTTGT-ACACTT--TTG-GAT----A-TTT---TA-AATTATT-GTTGCCAAATA-CTTAAACACAAT-GAT-TTTAA---AAAATGTATGT---------AATGT-------TGA-A------------TA-GCTAA--ATTT--T--------TATCGTAT-AT-------------TTAT-------G-AAG----------TA--TTTTTCTTATGT-C-ATCG-TC-GCGTC-AAA--AGCT-CTA-C-A---GAGC-TATA-T-G-Ttgaat
gi|8 : tcTT---TA-AATAAT--GT-ACCAAATA-CTTG--CAGA-T-GAT-TT--A---A------------------CAATGTA------------------A--TGTA-GCTAATG--TG--T--------TAT-GT-T-AT-------------TTATG------T-ATG----------TG--TCTTT---ATGT-C-AT-G-TC-G-GTC-AAA--AGTT-CTA-C-A---GTGC-T-TA-T-G-TTACT---G--TT---ATATACATGTATA-----TCCG-AC--TAT-AAAT-A--CA-ATT-T----TCTGAATCTTatcctg
gi|9 : actcgaaattatatgaatctatgatatatacatctgtaactgttgtaaaatcattatttaaatgtgaatttttatttattgtttacaaAAA-C--CAT-CTTTCTCA------GTTGT-A-CTGCATA-CATT-CAAAAT-TGT-AAA-ATG---ACAAATACATATA------AAGTATG-TTT--GCA-AT---TTTTTATGATAT--GACACGGT-GAAGG--GT-TG---TAACTTTGAT----A-TTT---TA-AATTTT--GT-GCCAAATA-CTTG--CACA-T-GAT-TT--A---AAAATGTA--T-GTATG-----TGTA------GG---CT--------TTTA----AATA--TT--T--------TAT-GT-T-AT-------------TTAT-------GAATG----------TATTTTTTT---ATGT-C-AT-G-TC-G-GTC-AAA--AGCT-CTACC-A---GAGC-T-TA-T-G-TTCCT---taaaaaaagtcaat
Alignments
lowQualScore : 1 1 1 11 11 111 1 222222 111 1 1111111 11 777777777777777777777777777777777777 11 22222222 1111111111111 111111111 1111111111 33333333333333333
lowQualScore : 5 5 1 0 6 77 6 6 88 66 6 1 3 6 6 6 555 0 66 5 111111 888 5 5 5 66 0 5 888 44 3 8888888 3 2 8 66 4 777 4 66 4 66 44 7 9999 8 777 8 4 55 4 1 3 55 3 7 3 77 555 888888888888888888888888888888888888 999 22 44 77777777 3 444 6666666666666 555555555 3333333333 44 555 2 4 2 2 2 2 2 33 2 2 2 777 2 2 2 4 2 333 11111111111111111 55555 2 22 0 2 2 33 2 2 7777 33
lowQualScore : . . . . . .. . . .. .. . . . . . . ... . .. . ...... ... . . . .. . . ... .. . ....... . . . .. . ... . .. . .. .. . .... . ... . . .. . . . .. . . . .. ... .................................... ... .. .. ........ . ... ............. ......... .......... .. ... . . . . . . . .. . . . ... . . . . . ... ................. ..... . .. . . . .. . . .... ..
lowQualScore : 0 5 0 6 7 77 7 7 55 55 7 0 3 7 7 7 333 0 99 0 222222 444 0 0 1 11 0 0 888 00 2 4444444 2 1 9 11 4 888 4 11 4 11 66 3 4444 9 000 0 0 00 0 6 6 00 6 3 3 99 888 000000000000000000000000000000000000 666 00 22 77777777 1 777 9999999999999 888888888 5555555555 22 000 5 7 2 2 2 2 2 11 0 0 0 000 0 0 1 0 0 777 22222222222222222 33333 1 99 5 1 4 22 4 4 4444 00
consensus : NNNNATAGTTAGGAATGCTACAAATTTAANTCAATTTTAAAAGTTTAATAAATAATTGGAATGGGG-AATCCTGTGTGTGT-NGCTCCTG-CA-GAT-TTAGA-AAAACCA-TCTTTCTNGAATCCTGTGTGTGTNG-CTCCTGC-A-GAT-T-TAGAAAA-C--CAT-CTTTCTTA------GTTGT-AACTGCATA-CATT-CAAAAC-TGT-AAA-CTG---ACTAATACATACATGTATTAAGTTTG-TTT--GCA-AT---TTTT-ATGATAT--GACACGGT-GAAGG--GT-CAACTTAACTGTGAT----A-TTT---TA-AA-TAAT--G-TGCCAAATA-CTT--GCAC-AT-GAT-TT--A---AAAATGTATGT-GTATG--CAATGTA------NGT-ACTA-TATA--TGTA-GCTAATGATTT--T--------TAT-GT-T-AT-------------TTAT-------T-ATG----------TA--TTT---TTATGT-C-AT-G-TC-G-GTC-AAA--AGCT-CTA-C-A---GAGC-T-TA-T-G-TTACT---G--TT---A-A-------ATA-----TCCG-AC--TTT-AAAT-A--AA-ATT-T----TCTGAA-CTTCT
Reference ( family-817 ) : NNNNATAGTTAGGAATGCTACAAATTTAANTCAATTTTAAAAGTTTAATAAATAATTGGAATGGGG-AATCCTGTGTGTGT-NGCTCCTG-CA-GATCTTAGA-AAAACCA-TCTTTCTNGAATCCTGTGTGTGTNG-CTCCTGC-A-GAT-T-TAGAAAA-C--CAT-CTTTCTTA------GTTGT-AACTGCATA-CATT-CAAAAC-TGT-AAA-CTG---ACTAATACATACATGTATTAAGTTTG-TTT--GCA-AT---TTTT-ATGATAT--GACACGGT-GAAGG--GT-CAACTTAACTGTGAT----A-TTT---TA-AA-TAAT--G-TGCCAAATA-CTT--GCAC-AT-GAT-TT--A---AAAATGTATGT-GTATG--CAATGTA------NGT-ACTA-TATA--TGTA-GCTAATGATTT--T--------TAT-GT-T-AT-------------TTAT-------T-ATG----------TA--TTT---TTATGT-C-AT-G-TC-G-GTC-AAA--AGCT-CTA-C-A---GAGC-T-TA-T-G-TTACT---G--TT---A-A-------ATA-----TCCG-AC--TTT-AAAT-A--AA-ATT-T----TCTGAA-CTTCT
gi|1 : ATA-TTAGGAATGCTACAAATTTAAATCAATTT-AAAAGTTTAATAAATAATTGGAATGGGG-AATCCTGTGTGTGT-TGCTCCTG-TA-GATCTTAGA-AAA-CCA-TCTTTCTNGAATCCTGTGTGTG--G-CTCCTGC-A-GATCT-TAGAAAA-T--CAT-CTTTCTTATA----GTTGT-AATTGCATA-CATT-CAAA-C-TGT-AAA-CTG---ACTAATACATACATGTATTAAGTTTG-TTT--GCA-AT---TTTT-ATGATAT--GACACGGT-GAAGG--GA-CAACTTAACTGTGAT----A-GTT---TA-AA-TAAT--A-AGCCAAATA-CTT--GCAC-AT-GAT-TT--A---CAAATGTATGT-GTATGAACAATGTA------TGT-ACTAGTATA--TGTA-GCTAATGATTTACTGAA-----TAT-GT-T-AT-------------TTAT-------T-ATG----------TA--TTT---CCATGT-C-AT-G-TC-G-GTC-AAA--AGCT-CTA-C-A---GAAC-T-TA-T-G-TTACT---G--TT---A-A-------ATA-----TCCG-AC--TTT-AAAT-A--AA-ATT-T----TCTGAA-CTTCT
gi|10 : agagAT-TT--A---AAAATGTATG-----------ATATA------TGT-AC------A--TGTA-----ATGATGT--T------------GT---AT-------------ATAT-------T-AT------------A--TTT---TTATATAC-CT-G-TCAG-GGC-AAA--AGCT-CTA-C-A---GAGC-T-TATT-G-CTATT---G--TG---ATA-------ATA-----TTAA-AT--TTTCAAAT-A--AA-CTT-TTGAATCTGAA-C
gi|11 : aaattttgttgaaaactAACGATTA--T--------TAT-GT-TTAT-------------TTAT-------T-ATG----------TA--TCT---TTATGT-C-AT-G-TC-G-GTC-ATA--AGCT-CTA-C-A---GAGCTT-TA-T-G-TTACT---GT-TT---T-A-------ATA-----TCCG-AC--TT---AAT-AATAA-ATT-T----TCTGAA--TTCT
gi|12 : ttatcatgtaaatagggcttaataaTTT--T--------TAT-GT-T-ATATGATGTAATAATTTAT-------G-ATG----------CA--TTT---TTATGT-C-AT-GATC---GTC-AGAACAGCTACTA-CAA---GAGC-T-TA-T-G-----------------A-A-------ATC-----ACCG-ACAATAT-GAAT-A--AA-ATTGTA---TCTGAA-Cgaa
gi|13 : gtattaagacT-C-AT-G-TT-G-GTC-AAA--AGGT-CTA-C-A---GAGC-T-TA-T-G-TTACT---GTTTT---A-T-------ATA-----TCCA-AC--TAT-AAAT-A--AA-ATT-T----TCTGAA-catgaa
gi|14 : attttttttctaatcataaTTA-TTC--GAATAT---ATCT-ATGATAT---ACACGGTTGAAGG--TTTCAACTTAACT-TGAT----A-TTT---TA-AA-TAAT--G-TGCCAAATA-CTG--CCAC-AA-GAT-TT--A---GAAATGTATGT-ATtctgagactttgacatc
gi|15 : gaTT--T--------TGT-GT-T-AT-------------CCAT-------TTATGCGGGTTTTTTTT--TTC---TTATGC-C-AT-G-TC-G-GTC-AAA--AGTT-CTA-C-A---GTGC-T-
gi|16 : aatatttcaatatttaaagatttata-AT-G-TC-A-TTC-AAA--AGCT-CCA-C-A---GAA--T-CA-T-A-GTATT---A---T---A-T-------GTC-----TCCA-AT--TTT-AAAT-A--AA-AAA-T----TTTGAA-TCTCcttg
gi|17 : -G-TC-G-GTA-AAT--TGCT-CTT-C-A---GAGC-T-AA-T-G-TTATTTATA--TT---G-A-------ATA-----TCCG-AC--TTT-AAAT-A--AATATT-A----TTTGAaatg
gi|18 : a-CTA---A---GAGC-T-TA-T-G-TTACT---G--TT---A----------------------------T-AATT-A--AA-ATT-T----TCTGAA-tt
gi|19 : GCA-CTA-C-A---GAGC-T-TA-T-G-TTACT---G--TTTC-A-T-------GTG-----TCCG-AC--TAT-AGAT-A--AA-ATT-T----TCTAAA--TTCTtctgaattctgaatgatatgaaaccacc
gi|2 : atATAGTTAGGAATGCTACAA-TTTAACTCAATTTTAAAAGTTTAATAAATACTTGAAATGGGA-AATCCTGTGTGTGT-TGCTCCTG-TA-GAT-TTAGA-AAAACCA-TCTTTCTgaa
gi|2 : AATCCTGTGTGTGTTG-CTCCTGT-A-GAT-T-TAGAAAAAC--CAT-CTTTCTTA------GTTGTGAATTGCATA-CATT-C-AAAC-TGTAAAA-CTG---ACT-ATACATACATGTATTAAGTTTGTTTT--GCA-AT---TTTT-ATGATAT--GACACGGT-GAGGG--AC-AAACTT-ACTGTGAT----AGTTT---TAGAA-TAATAAG-T-CCAAATA-CTT--GCAC-ATGGAT-TT--A---CAAATGTATGTGGTATGAACAATGTT------GGTAACTAGTATA--TGTAGGCTAATGGCTT--TTACTGAGGTAT-GT-T-AT-------------TTAT-------T-ATG----------TA---TT---TTATGT-CGAT-G-T--G-GTC-AAA--AGCT-CTA-C-ACATGAAC-T-CA-TGG-TTACT---GGTTT---AGA-------ATA-----T-CG-AC--TTT-TAAT-A--AA-ATT-T----TCTGAA-CTTCTtagttgtgaattgcatacattcaaactgtaaaactgactatacatacatgtattaagtttgttttgcaatttttatgatatgacacggtgagggacaaacttactgtgatagttttagaataataagtccaaatacttgcacatggatttacaaatgtatgtggtatgaacaatgttggtaactagtatatgtaggctaatggcttttactgaggtatgttatttattatgtattttatgtcgatgtggtcaaaagctctacacatgaactcatggttactggtttagaatatcgacttttaataaaattttctgaacttctgaaggctaaaaggtaa
gi|20 : atagttaggaatgctacaatttaactcaattttaaaagtttaataaatacttgaaatggga---TTATTT-T-AT-G-TT-G-GTC-AAA--AGCT-CT---------AGC-T-TA-T------------------------------TC-----TCCG-AC--TT---GAT-A--AA-ATG-T----TCTGAA-gaaggctaaaaggtaa
gi|21 : -C-AT-G-CT-G-GTC-AAA--AGCT-CTA-A-A---GAGC-T-TA-T-G-TTACT---GTTTT---A-A-------ATA-----TCCA-AC--TTT-AAactaaatg
gi|22 : --TT---A-A-------ATA-----TCCA-AC--ATT-AAAT-A--AA-ATT-T----TCTGAA-C
gi|23 : tgtactttgtt-G-TTACT---G--TTTT-A-A-------ATA-----TCCG-AC--TTT-AAGTCA--AA-ATT-T----TCCGAA-CTTCctgaaatttg
gi|24 : ATA-CTT--GCAC-AA-GAT-TT--A---AAAATGTATGT-GTGTG--
gi|3 : ATAGTTAGGAATGCTACAA-TTTAACTCAATTTTAAAAGTTTAATAAATACTTGAAATGGGA-AATCCTGTGTGTGT-TGCTCCTG-TA-GAT-TTAGA-AAAACCA-TCTTTCT
gi|3 : AATCCTGTGTGTGTTG-CTCCTGT-A-GAT-T-TAGAAAAAC--CAT-CTTTCTTA------GTTGTGAATTGCATA-CATT-C-AAAC-TGTAAAA-CTG---ACT-ATACATACATGTATTAAGTTTGTTTT--GCA-AT---TTTT-ATGATAT--GACACGGT-GAGGG--AC-AAACTT-ACTGTGAT----AGTTT---TAGAA-TAATAAG-T-CCAAATA-CTT--GCAC-ATGGAT-TT--A---CAAATGTATGTGGTATGAACAATGTT------GGTAACTAGTATA--TGTAGGCTAATGGCTT--TTACTGAGGTAT-GT-T-AT-------------TTAT-------T-ATG----------TA---TT---TTATGT-CGAT-G-T--G-GTC-AAA--AGCT-CTA-C-ACATGAAC-T-CA-TGG-TTACT---GGTTT---AGA-------ATA-----T-CG-AC--TTT-TAAT-A--AA-ATT-T----TCTGAA-CTTCTtagttgtgaattgcatacattcaaactgtaaaactgactatacatacatgtattaagtttgttttgcaatttttatgatatgacacggtgagggacaaacttactgtgatagttttagaataataagtccaaatacttgcacatggatttacaaatgtatgtggtatgaacaatgttggtaactagtatatgtaggctaatggcttttactgaggtatgttatttattatgtattttatgtcgatgtggtcaaaagctctacacatgaactcatggttactggtttagaatatcgacttttaataaaattttctgaacttctgaaggctaaaaggtaa
gi|4 : atagttaggaatgctacaatttaactcaattttaaaagtttaataaatacttgaaatgggaAATAATTGAATCGGTGCAATCCAGTGTGTGTCGGCTCCTGCCATGATGATAGGCAACAGCATTCCTTCTgaaggctaaaaggtaa
gi|4 : AATCCAGTGTGTGTCGGCTCCTGCCATGAT-GATAGGCAA-CAGCATTCCTTCTTA------GCTGT-A-CTTTATAACATTTCGAAAT-TGT-AAAACTGTCGACAAA---ACACATG-ATTTAGTTTA-------CA-ATGTATTTT-GTAATATCCGACATGGT-GAAGG--GT-CAACTTAACTGTGATCAAAA-GTTAAATA-AA-TAATC-G-TGCCTAATACCTT--GCAC-AT-GGTGGT--ACGTAAAATGTATGT--TATGT-TAGCGTAATCTTTAAT-ATTATTGTA--TGTA-G-------TTT--T--------T-T-GT----T-------------TTAT-------T-AT-----------CA--TT--------------T-G-TC-G-ACCAAAA--AGCT-CTA-C-A---GAGC-T-TT-T-GTTTACT---GC-TT---A-T-------ATATATTTTCCGAAC--TAT-AATA-A--AA-ATT-T----TCTGAA-tagctgtactttataacatttcgaaattgtaaaactgtcgacaaaacacatgatttagtttacaatgtattttgtaatatccgacatggtgaagggtcaacttaactgtgatcaaaagttaaataaataatcgtgcctaataccttgcacatggtggtacgtaaaatgtatgttatgttagcgtaatctttaatattattgtatgtagttttttgttttattatcatttgtcgaccaaaaagctctacagagcttttgtttactgcttatatatattttccgaactataataaaaattttctgaaatctgga
gi|5 : aataattgaatcggtgcTTTAAAAGTTTTATAAATAATTAGAATGGGG-AATCCTGTGTGTGT-GGCTCCTG-CA-GATCTTAG--AAAACCT-TCCTTatctgga
gi|5 : aaGAATCCTGTGTGTGTGG-CTCCTGC-A-GATCT-TAGAAAA-C--CTT-CCTTATTACATGTAGTTGT-A-CTACATA-CATT-CAAAAT-TGT-AAC-CTG---ACTAATACATA------TCA----TG-TTT--GCA-AT---TTTT-ATGATAT--GACATGGT-AAAGG--GT-CAACTTAACTGTGAT----A-TTT---TA-AA-TAGT--G-TGCCAAATA-CTT--GCAC-AT-GAT-TT--A---GAAATGTATGT-ATCTGT-CTGTGTA------CGT-A-TA-TATAAATGTA-GTTAAT--TTT--T--------TAG-TT-T-AT-------------TTATGTACCAGT-ATG----------TA--TTT---TTATGT-C-AT-G-TC-G-ATC-AAA--AGCT-CTA-C-A---GAGC-T-TA-T-G-CT--------------------------------TCCG-AC--TAT-AAAT-A--AA-ATT-T----TCTGAA-attacatgtagttgtactacatacattcaaaattgtaacctgactaatacatatcatgtttgcaatttttatgatatgacatggtaaagggtcaacttaactgtgatattttaaatagtgtgccaaatacttgcacatgatttagaaatgtatgtatctgtctgtgtacgtatatataaatgtagttaattttttagtttatttatgtaccagtatgtatttttatgtcatgtcgatcaaaagctctacagagcttatgcttccgactataaataaaattttctgaatctgaa
gi|6 : aatttaaaagttttataaataattagaatgggATA-TTAGGAATACTACAAATTTAAATCAATTT-AAAAGTTTAATAAATAATTGGAATGGGG-AATCCT-TGTGTGT-GGCTCCTG-CA-GATA-TAG--AAAACCA-TCTTTCTtctgaa
gi|6 : aGAATCCT-TGTGTGTGG-CTCCTGC-A-GAT-A-TAGAAAA-C--CAT-CTTTCTTA------GTTGT-A-CTGCAT--CATT-CAAAAT-TGT-AAA-CTG---ACTAATACATA------TTA----TG-TTT--GCA-AT---TTTT-ATGATAC--GACACGGT-GAAGG--GT-CAACTTAACTGTGAT----A-TTT---TA-AA-TAAT--G-TGCAAAATA-CTT--GCAC-AA-GAT-TTA-A---AAAATGTATGT-GT-TG-----TGTA------TGC-A------------TA-GCTGATG---T--T--------TAT-GT-T-AT-------------TTA--------T-GTA----------TT--TTT---TTATGT-C-AT-G-TC-G-GTC-AAA--AGCT-CTA-C-A---GAGC-T-TA-T-G-TTACT---G--TTTTAA-A-------ATA-----TCCG-AC--TTT-AAtagttgtactgcatcattcaaaattgtaaactgactaatacatattatgtttgcaatttttatgatacgacacggtgaagggtcaacttaactgtgatattttaaataatgtgcaaaatacttgcacaagatttaaaaaatgtatgtgttgtgtatgcatagctgatgtttatgttatttatgtatttttttatgtcatgtcggtcaaaagctctacagagcttatgttactgttttaaaatatccgactttaatgaat
gi|7 : aatattaggaatactacaaatttaaatcaatttaaaagtttaataaataattggaatgggAT-T-AAGCAAA-C--CAT-CCTTTTCA------GT-AT-GACTGCATA-CATT-CAAAAAATGT-AAA-ATG---ACAAA---ATACATA-A--AAGTATG-TTTCGGCA-AT---TTTT-ATGATAT--GACACGGT-GAAGGTTGT-ACACTT--TTG-GAT----A-TTT---TA-AATTATT--GTTGCCAAATA-CTTAAACACAAT-GAT-TTTAA---AAAATGTATGT---------AATGT-------TGA-A------------TA-GCTAA--ATTT--T--------TATCGTAT-AT-------------TTAT-------G-AAG----------TA--TTTTTCTTATGT-C-ATCG-TC-GCGTC-AAA--AGCT-CTA-C-A---GAGC-TATA-T-G-Ttgaat
gi|8 : tcTT---TA-AA-TAAT--G-TACCAAATA-CTT--GCAG-AT-GAT-TT--A---A------------------CAATGTA------------------A--TGTA-GCTAATG--TG--T--------TAT-GT-T-AT-------------TTATG------T-ATG----------TG--TCT---TTATGT-C-AT-G-TC-G-GTC-AAA--AGTT-CTA-C-A---GTGC-T-TA-T-G-TTACT---G--TT---ATATACATGTATA-----TCCG-AC--TAT-AAAT-A--CA-ATT-T----TCTGAATCTTatcctg
gi|9 : actcgaaattatatgaatctatgatatatacatctgtaactgttgtaaaatcattatttaaatgtgaatttttatttattgtttacaaAAA-C--CAT-CTTTCTCA------GTTGT-A-CTGCATA-CATT-CAAAAT-TGT-AAA-ATG---ACAAATACATATA------AAGTATG-TTT--GCA-AT---TTTTTATGATAT--GACACGGT-GAAGG--GT-TG---TAACTTTGAT----A-TTT---TA-AA-TTTT--G-TGCCAAATA-CTT--GCAC-AT-GAT-TT--A---AAAATGTA--T-GTATG-----TGTA------GG---CT--------TTTA----AATA--TT--T--------TAT-GT-T-AT-------------TTAT-------GAATG----------TATTTTT---TTATGT-C-AT-G-TC-G-GTC-AAA--AGCT-CTACC-A---GAGC-T-TA-T-G-TTCCT---taaaaaaagtcaat
Alignments
lowQualScore : 1 1 1 1 1 111 1 222222 111 1 1111111 11 777777777777777777777777777777777777 11 22222222 1111111111111 111111111 1111111111 33333333333333333
lowQualScore : 5 5 1 0 6 77 6 0 0 1 3 6 6 6 555 0 66 5 111111 888 5 5 5 66 0 5 888 44 3 8888888 3 2 8 66 4 777 4 66 4 66 44 7 9999 8 777 8 99 55 3 55 999 3 77 555 888888888888888888888888888888888888 999 22 44 77777777 3 444 6666666666666 555555555 3333333333 44 555 2 4 2 2 2 2 2 33 2 2 2 777 2 2 2 4 2 333 11111111111111111 55555 2 22 0 2 2 33 2 2 7777 33
lowQualScore : . . . . . .. . . . . . . . . ... . .. . ...... ... . . . .. . . ... .. . ....... . . . .. . ... . .. . .. .. . .... . ... . .. .. . .. ... . .. ... .................................... ... .. .. ........ . ... ............. ......... .......... .. ... . . . . . . . .. . . . ... . . . . . ... ................. ..... . .. . . . .. . . .... ..
lowQualScore : 0 5 0 6 7 77 0 6 8 0 3 7 7 7 333 0 99 0 222222 444 0 0 1 11 0 0 888 00 2 4444444 2 1 9 11 4 888 4 11 4 11 66 3 4444 9 000 0 00 66 6 00 000 3 99 888 000000000000000000000000000000000000 666 00 22 77777777 1 777 9999999999999 888888888 5555555555 22 000 5 7 2 2 2 2 2 11 0 0 0 000 0 0 1 0 0 777 22222222222222222 33333 1 99 5 1 4 22 4 4 4444 00
consensus : NNNNATAGTTAGGAATGCTACAAATTTAANTCAATTTTAAAAGTTTAATAAATAATTGGAATGGGG-AATCCTGTGTGTGT-NGCTCCTGCAGATCTTAGAAAAACCATCTTTCTNGAATCCTGTGTGTGTNG-CTCCTGC-A-GAT-T-TAGAAAA-C--CAT-CTTTCTTA------GTTGT-AACTGCATA-CATT-CAAAAC-TGT-AAA-CTG---ACTAATACATACATGTATTAAGTTTG-TTT--GCA-AT---TTTT-ATGATAT--GACACGGT-GAAGG--GT-CAACTTAACTGTGAT----A-TTT---TA-AATAAT--GT-GCCAAATA-CTTG--CACA-T-GAT-TT--A---AAAATGTATGT-GTATG--CAATGTA------NGT-ACTA-TATA--TGTA-GCTAATGATTT--T--------TAT-GT-T-AT-------------TTAT-------T-ATG----------TA--TTTTT---ATGT-C-AT-G-TC-G-GTC-AAA--AGCT-CTA-C-A---GAGC-T-TA-T-G-TTACT---G--TT---A-A-------ATA-----TCCG-AC--TTT-AAAT-A--AA-ATT-T----TCTGAA-CTTCT
Reference ( family-817 ) : NNNNATAGTTAGGAATGCTACAAATTTAANTCAATTTTAAAAGTTTAATAAATAATTGGAATGGGG-AATCCTGTGTGTGT-NGCTCCTGCAGAT-TTAGAAAAACCATCTTTCTNGAATCCTGTGTGTGTNG-CTCCTGC-A-GAT-T-TAGAAAA-C--CAT-CTTTCTTA------GTTGT-AACTGCATA-CATT-CAAAAC-TGT-AAA-CTG---ACTAATACATACATGTATTAAGTTTG-TTT--GCA-AT---TTTT-ATGATAT--GACACGGT-GAAGG--GT-CAACTTAACTGTGAT----A-TTT---TA-AATAAT--GT-GCCAAATA-CTTG--CACA-T-GAT-TT--A---AAAATGTATGT-GTATG--CAATGTA------NGT-ACTA-TATA--TGTA-GCTAATGATTT--T--------TAT-GT-T-AT-------------TTAT-------T-ATG----------TA--TTTTT---ATGT-C-AT-G-TC-G-GTC-AAA--AGCT-CTA-C-A---GAGC-T-TA-T-G-TTACT---G--TT---A-A-------ATA-----TCCG-AC--TTT-AAAT-A--AA-ATT-T----TCTGAA-CTTCT
gi|1 : ATA-TTAGGAATGCTACAAATTTAAATCAATTT-AAAAGTTTAATAAATAATTGGAATGGGG-AATCCTGTGTGTGT-TGCTCCTGTAGATCTTAGAAAA-CCATCTTTCTNGAATCCTGTGTGTG--G-CTCCTGC-A-GATCT-TAGAAAA-T--CAT-CTTTCTTATA----GTTGT-AATTGCATA-CATT-CAAA-C-TGT-AAA-CTG---ACTAATACATACATGTATTAAGTTTG-TTT--GCA-AT---TTTT-ATGATAT--GACACGGT-GAAGG--GA-CAACTTAACTGTGAT----A-GTT---TA-AATAAT--AA-GCCAAATA-CTTG--CACA-T-GAT-TT--A---CAAATGTATGT-GTATGAACAATGTA------TGT-ACTAGTATA--TGTA-GCTAATGATTTACTGAA-----TAT-GT-T-AT-------------TTAT-------T-ATG----------TA--TTTCC---ATGT-C-AT-G-TC-G-GTC-AAA--AGCT-CTA-C-A---GAAC-T-TA-T-G-TTACT---G--TT---A-A-------ATA-----TCCG-AC--TTT-AAAT-A--AA-ATT-T----TCTGAA-CTTCT
gi|10 : agagAT-TT--A---AAAATGTATG-----------ATATA------TGT-AC------A--TGTA-----ATGATGT--T------------GT---AT-------------ATAT-------T-AT------------A--TTTTT---ATATAC-CT-G-TCAG-GGC-AAA--AGCT-CTA-C-A---GAGC-T-TATT-G-CTATT---G--TG---ATA-------ATA-----TTAA-AT--TTTCAAAT-A--AA-CTT-TTGAATCTGAA-C
gi|11 : aaattttgttgaaaactAACGATTA--T--------TAT-GT-TTAT-------------TTAT-------T-ATG----------TA--TCTTT---ATGT-C-AT-G-TC-G-GTC-ATA--AGCT-CTA-C-A---GAGCTT-TA-T-G-TTACT---GT-TT---T-A-------ATA-----TCCG-AC--TT---AAT-AATAA-ATT-T----TCTGAA--TTCT
gi|12 : ttatcatgtaaatagggcttaataaTTT--T--------TAT-GT-T-ATATGATGTAATAATTTAT-------G-ATG----------CA--TTTTT---ATGT-C-AT-GATC---GTC-AGAACAGCTACTA-CAA---GAGC-T-TA-T-G-----------------A-A-------ATC-----ACCG-ACAATAT-GAAT-A--AA-ATTGTA---TCTGAA-Cgaa
gi|13 : gtattaagacT-C-AT-G-TT-G-GTC-AAA--AGGT-CTA-C-A---GAGC-T-TA-T-G-TTACT---GTTTT---A-T-------ATA-----TCCA-AC--TAT-AAAT-A--AA-ATT-T----TCTGAA-catgaa
gi|14 : attttttttctaatcataaTTA-TTC--GAATAT---ATCT-ATGATAT---ACACGGTTGAAGG--TTTCAACTTAACT-TGAT----A-TTT---TA-AATAAT--GT-GCCAAATA-CTGC--CACA-A-GAT-TT--A---GAAATGTATGT-ATtctgagactttgacatc
gi|15 : gaTT--T--------TGT-GT-T-AT-------------CCAT-------TTATGCGGGTTTTTTTT--TTCTT---ATGC-C-AT-G-TC-G-GTC-AAA--AGTT-CTA-C-A---GTGC-T-
gi|16 : aatatttcaatatttaaagatttata-AT-G-TC-A-TTC-AAA--AGCT-CCA-C-A---GAA--T-CA-T-A-GTATT---A---T---A-T-------GTC-----TCCA-AT--TTT-AAAT-A--AA-AAA-T----TTTGAA-TCTCcttg
gi|17 : -G-TC-G-GTA-AAT--TGCT-CTT-C-A---GAGC-T-AA-T-G-TTATTTATA--TT---G-A-------ATA-----TCCG-AC--TTT-AAAT-A--AATATT-A----TTTGAaatg
gi|18 : a-CTA---A---GAGC-T-TA-T-G-TTACT---G--TT---A----------------------------T-AATT-A--AA-ATT-T----TCTGAA-tt
gi|19 : GCA-CTA-C-A---GAGC-T-TA-T-G-TTACT---G--TTTC-A-T-------GTG-----TCCG-AC--TAT-AGAT-A--AA-ATT-T----TCTAAA--TTCTtctgaattctgaatgatatgaaaccacc
gi|2 : atATAGTTAGGAATGCTACAA-TTTAACTCAATTTTAAAAGTTTAATAAATACTTGAAATGGGA-AATCCTGTGTGTGT-TGCTCCTGTAGAT-TTAGAAAAACCATCTTTCTgaa
gi|2 : AATCCTGTGTGTGTTG-CTCCTGT-A-GAT-T-TAGAAAAAC--CAT-CTTTCTTA------GTTGTGAATTGCATA-CATT-C-AAAC-TGTAAAA-CTG---ACT-ATACATACATGTATTAAGTTTGTTTT--GCA-AT---TTTT-ATGATAT--GACACGGT-GAGGG--AC-AAACTT-ACTGTGAT----AGTTT---TAGAATAATAAGT--CCAAATA-CTTG--CACA-TGGAT-TT--A---CAAATGTATGTGGTATGAACAATGTT------GGTAACTAGTATA--TGTAGGCTAATGGCTT--TTACTGAGGTAT-GT-T-AT-------------TTAT-------T-ATG----------TA---TTTT---ATGT-CGAT-G-T--G-GTC-AAA--AGCT-CTA-C-ACATGAAC-T-CA-TGG-TTACT---GGTTT---AGA-------ATA-----T-CG-AC--TTT-TAAT-A--AA-ATT-T----TCTGAA-CTTCTtagttgtgaattgcatacattcaaactgtaaaactgactatacatacatgtattaagtttgttttgcaatttttatgatatgacacggtgagggacaaacttactgtgatagttttagaataataagtccaaatacttgcacatggatttacaaatgtatgtggtatgaacaatgttggtaactagtatatgtaggctaatggcttttactgaggtatgttatttattatgtattttatgtcgatgtggtcaaaagctctacacatgaactcatggttactggtttagaatatcgacttttaataaaattttctgaacttctgaaggctaaaaggtaa
gi|20 : atagttaggaatgctacaatttaactcaattttaaaagtttaataaatacttgaaatgggaTT---ATTT-T-AT-G-TT-G-GTC-AAA--AGCT-CT---------AGC-T-TA-T------------------------------TC-----TCCG-AC--TT---GAT-A--AA-ATG-T----TCTGAA-gaaggctaaaaggtaa
gi|21 : -C-AT-G-CT-G-GTC-AAA--AGCT-CTA-A-A---GAGC-T-TA-T-G-TTACT---GTTTT---A-A-------ATA-----TCCA-AC--TTT-AAactaaatg
gi|22 : --TT---A-A-------ATA-----TCCA-AC--ATT-AAAT-A--AA-ATT-T----TCTGAA-C
gi|23 : tgtactttgtt-G-TTACT---G--TTTT-A-A-------ATA-----TCCG-AC--TTT-AAGTCA--AA-ATT-T----TCCGAA-CTTCctgaaatttg
gi|24 : ATA-CTTG--CACA-A-GAT-TT--A---AAAATGTATGT-GTGTG--
gi|3 : ATAGTTAGGAATGCTACAA-TTTAACTCAATTTTAAAAGTTTAATAAATACTTGAAATGGGA-AATCCTGTGTGTGT-TGCTCCTGTAGAT-TTAGAAAAACCATCTTTCT
gi|3 : AATCCTGTGTGTGTTG-CTCCTGT-A-GAT-T-TAGAAAAAC--CAT-CTTTCTTA------GTTGTGAATTGCATA-CATT-C-AAAC-TGTAAAA-CTG---ACT-ATACATACATGTATTAAGTTTGTTTT--GCA-AT---TTTT-ATGATAT--GACACGGT-GAGGG--AC-AAACTT-ACTGTGAT----AGTTT---TAGAATAATAAGT--CCAAATA-CTTG--CACA-TGGAT-TT--A---CAAATGTATGTGGTATGAACAATGTT------GGTAACTAGTATA--TGTAGGCTAATGGCTT--TTACTGAGGTAT-GT-T-AT-------------TTAT-------T-ATG----------TA---TTTT---ATGT-CGAT-G-T--G-GTC-AAA--AGCT-CTA-C-ACATGAAC-T-CA-TGG-TTACT---GGTTT---AGA-------ATA-----T-CG-AC--TTT-TAAT-A--AA-ATT-T----TCTGAA-CTTCTtagttgtgaattgcatacattcaaactgtaaaactgactatacatacatgtattaagtttgttttgcaatttttatgatatgacacggtgagggacaaacttactgtgatagttttagaataataagtccaaatacttgcacatggatttacaaatgtatgtggtatgaacaatgttggtaactagtatatgtaggctaatggcttttactgaggtatgttatttattatgtattttatgtcgatgtggtcaaaagctctacacatgaactcatggttactggtttagaatatcgacttttaataaaattttctgaacttctgaaggctaaaaggtaa
gi|4 : atagttaggaatgctacaatttaactcaattttaaaagtttaataaatacttgaaatgggaAATAATTGAATCGGTGCAATCCAGTGTGTGTCGGCTCCTGCgaaggctaaaaggtaa
gi|4 : AATCCAGTGTGTGTCGGCTCCTGCCATGAT-GATAGGCAA-CAGCATTCCTTCTTA------GCTGT-A-CTTTATAACATTTCGAAAT-TGT-AAAACTGTCGACAAA---ACACATG-ATTTAGTTTA-------CA-ATGTATTTT-GTAATATCCGACATGGT-GAAGG--GT-CAACTTAACTGTGATCAAAA-GTTAAATA-AATAATC-GT-GCCTAATACCTTG--CACA-T-GGTGGT--ACGTAAAATGTATGT--TATGT-TAGCGTAATCTTTAAT-ATTATTGTA--TGTA-G-------TTT--T--------T-T-GT----T-------------TTAT-------T-AT-----------CA--TT--------------T-G-TC-G-ACCAAAA--AGCT-CTA-C-A---GAGC-T-TT-T-GTTTACT---GC-TT---A-T-------ATATATTTTCCGAAC--TAT-AATA-A--AA-ATT-T----TCTGAA-catgatgataggcaacagcattccttcttagctgtactttataacatttcgaaattgtaaaactgtcgacaaaacacatgatttagtttacaatgtattttgtaatatccgacatggtgaagggtcaacttaactgtgatcaaaagttaaataaataatcgtgcctaataccttgcacatggtggtacgtaaaatgtatgttatgttagcgtaatctttaatattattgtatgtagttttttgttttattatcatttgtcgaccaaaaagctctacagagcttttgtttactgcttatatatattttccgaactataataaaaattttctgaaatctgga
gi|5 : aataattgaatcggtgcTTTAAAAGTTTTATAAATAATTAGAATGGGG-AATCCTGTGTGTGT-GGCTCCTGCAGATCTTAG-AAAACCTTCCTTatctgga
gi|5 : aaGAATCCTGTGTGTGTGG-CTCCTGC-A-GATCT-TAGAAAA-C--CTT-CCTTATTACATGTAGTTGT-A-CTACATA-CATT-CAAAAT-TGT-AAC-CTG---ACTAATACATA------TCA----TG-TTT--GCA-AT---TTTT-ATGATAT--GACATGGT-AAAGG--GT-CAACTTAACTGTGAT----A-TTT---TA-AATAGT--GT-GCCAAATA-CTTG--CACA-T-GAT-TT--A---GAAATGTATGT-ATCTGT-CTGTGTA------CGT-A-TA-TATAAATGTA-GTTAAT--TTT--T--------TAG-TT-T-AT-------------TTATGTACCAGT-ATG----------TA--TTTTT---ATGT-C-AT-G-TC-G-ATC-AAA--AGCT-CTA-C-A---GAGC-T-TA-T-G-CT--------------------------------TCCG-AC--TAT-AAAT-A--AA-ATT-T----TCTGAA-attacatgtagttgtactacatacattcaaaattgtaacctgactaatacatatcatgtttgcaatttttatgatatgacatggtaaagggtcaacttaactgtgatattttaaatagtgtgccaaatacttgcacatgatttagaaatgtatgtatctgtctgtgtacgtatatataaatgtagttaattttttagtttatttatgtaccagtatgtatttttatgtcatgtcgatcaaaagctctacagagcttatgcttccgactataaataaaattttctgaatctgaa
gi|6 : aatttaaaagttttataaataattagaatgggATA-TTAGGAATACTACAAATTTAAATCAATTT-AAAAGTTTAATAAATAATTGGAATGGGG-AATCCT-TGTGTGT-GGCTCCTGCAGAT-ATAG-AAAACCATCTTTCTtctgaa
gi|6 : aGAATCCT-TGTGTGTGG-CTCCTGC-A-GAT-A-TAGAAAA-C--CAT-CTTTCTTA------GTTGT-A-CTGCAT--CATT-CAAAAT-TGT-AAA-CTG---ACTAATACATA------TTA----TG-TTT--GCA-AT---TTTT-ATGATAC--GACACGGT-GAAGG--GT-CAACTTAACTGTGAT----A-TTT---TA-AATAAT--GT-GCAAAATA-CTTG--CACA-A-GAT-TTA-A---AAAATGTATGT-GT-TG-----TGTA------TGC-A------------TA-GCTGATG---T--T--------TAT-GT-T-AT-------------TTA--------T-GTA----------TT--TTTTT---ATGT-C-AT-G-TC-G-GTC-AAA--AGCT-CTA-C-A---GAGC-T-TA-T-G-TTACT---G--TTTTAA-A-------ATA-----TCCG-AC--TTT-AAtagttgtactgcatcattcaaaattgtaaactgactaatacatattatgtttgcaatttttatgatacgacacggtgaagggtcaacttaactgtgatattttaaataatgtgcaaaatacttgcacaagatttaaaaaatgtatgtgttgtgtatgcatagctgatgtttatgttatttatgtatttttttatgtcatgtcggtcaaaagctctacagagcttatgttactgttttaaaatatccgactttaatgaat
gi|7 : aatattaggaatactacaaatttaaatcaatttaaaagtttaataaataattggaatgggAT-T-AAGCAAA-C--CAT-CCTTTTCA------GT-AT-GACTGCATA-CATT-CAAAAAATGT-AAA-ATG---ACAAA---ATACATA-A--AAGTATG-TTTCGGCA-AT---TTTT-ATGATAT--GACACGGT-GAAGGTTGT-ACACTT--TTG-GAT----A-TTT---TA-AATTATT-GTTGCCAAATA-CTTAAACACAAT-GAT-TTTAA---AAAATGTATGT---------AATGT-------TGA-A------------TA-GCTAA--ATTT--T--------TATCGTAT-AT-------------TTAT-------G-AAG----------TA--TTTTTCTTATGT-C-ATCG-TC-GCGTC-AAA--AGCT-CTA-C-A---GAGC-TATA-T-G-Ttgaat
gi|8 : tcTT---TA-AATAAT--GT-ACCAAATA-CTTG--CAGA-T-GAT-TT--A---A------------------CAATGTA------------------A--TGTA-GCTAATG--TG--T--------TAT-GT-T-AT-------------TTATG------T-ATG----------TG--TCTTT---ATGT-C-AT-G-TC-G-GTC-AAA--AGTT-CTA-C-A---GTGC-T-TA-T-G-TTACT---G--TT---ATATACATGTATA-----TCCG-AC--TAT-AAAT-A--CA-ATT-T----TCTGAATCTTatcctg
gi|9 : actcgaaattatatgaatctatgatatatacatctgtaactgttgtaaaatcattatttaaatgtgaatttttatttattgtttacaaAAA-C--CAT-CTTTCTCA------GTTGT-A-CTGCATA-CATT-CAAAAT-TGT-AAA-ATG---ACAAATACATATA------AAGTATG-TTT--GCA-AT---TTTTTATGATAT--GACACGGT-GAAGG--GT-TG---TAACTTTGAT----A-TTT---TA-AATTTT--GT-GCCAAATA-CTTG--CACA-T-GAT-TT--A---AAAATGTA--T-GTATG-----TGTA------GG---CT--------TTTA----AATA--TT--T--------TAT-GT-T-AT-------------TTAT-------GAATG----------TATTTTTTT---ATGT-C-AT-G-TC-G-GTC-AAA--AGCT-CTACC-A---GAGC-T-TA-T-G-TTCCT---taaaaaaagtcaat
Alignments
lowQualScore : 1 1 1 11 11 111 1 222222 111 1 1111111 11 777777777777777777777777777777777777 11 22222222 1111111111111 111111111 1111111111 33333333333333333
lowQualScore : 5 5 1 0 6 77 6 6 88 66 6 1 3 6 6 6 555 0 66 5 111111 888 5 5 5 66 0 5 888 44 3 8888888 3 2 8 66 4 777 4 66 4 66 44 7 9999 8 777 8 4 55 4 1 3 55 3 7 3 77 555 888888888888888888888888888888888888 999 22 44 77777777 3 444 6666666666666 555555555 3333333333 44 555 2 4 2 2 2 2 2 33 2 2 2 777 2 2 2 4 2 333 11111111111111111 55555 2 22 0 2 2 33 2 2 7777 33
lowQualScore : . . . . . .. . . .. .. . . . . . . ... . .. . ...... ... . . . .. . . ... .. . ....... . . . .. . ... . .. . .. .. . .... . ... . . .. . . . .. . . . .. ... .................................... ... .. .. ........ . ... ............. ......... .......... .. ... . . . . . . . .. . . . ... . . . . . ... ................. ..... . .. . . . .. . . .... ..
lowQualScore : 0 5 0 6 7 77 7 7 55 55 7 0 3 7 7 7 333 0 99 0 222222 444 0 0 1 11 0 0 888 00 2 4444444 2 1 9 11 4 888 4 11 4 11 66 3 4444 9 000 0 0 00 0 6 6 00 6 3 3 99 888 000000000000000000000000000000000000 666 00 22 77777777 1 777 9999999999999 888888888 5555555555 22 000 5 7 2 2 2 2 2 11 0 0 0 000 0 0 1 0 0 777 22222222222222222 33333 1 99 5 1 4 22 4 4 4444 00
consensus : NNNNATAGTTAGGAATGCTACAAATTTAANTCAATTTTAAAAGTTTAATAAATAATTGGAATGGGG-AATCCTGTGTGTGT-NGCTCCTG-CA-GAT-TTAGA-AAAACCA-TCTTTCTNGAATCCTGTGTGTGTNG-CTCCTGC-A-GAT-T-TAGAAAA-C--CAT-CTTTCTTA------GTTGT-AACTGCATA-CATT-CAAAAC-TGT-AAA-CTG---ACTAATACATACATGTATTAAGTTTG-TTT--GCA-AT---TTTT-ATGATAT--GACACGGT-GAAGG--GT-CAACTTAACTGTGAT----A-TTT---TA-AA-TAAT--G-TGCCAAATA-CTT--GCAC-AT-GAT-TT--A---AAAATGTATGT-GTATG--CAATGTA------NGT-ACTA-TATA--TGTA-GCTAATGATTT--T--------TAT-GT-T-AT-------------TTAT-------T-ATG----------TA--TTT---TTATGT-C-AT-G-TC-G-GTC-AAA--AGCT-CTA-C-A---GAGC-T-TA-T-G-TTACT---G--TT---A-A-------ATA-----TCCG-AC--TTT-AAAT-A--AA-ATT-T----TCTGAA-CTTCT
Reference ( family-817 ) : NNNNATAGTTAGGAATGCTACAAATTTAANTCAATTTTAAAAGTTTAATAAATAATTGGAATGGGG-AATCCTGTGTGTGT-NGCTCCTG-CA-GATCTTAGA-AAAACCA-TCTTTCTNGAATCCTGTGTGTGTNG-CTCCTGC-A-GAT-T-TAGAAAA-C--CAT-CTTTCTTA------GTTGT-AACTGCATA-CATT-CAAAAC-TGT-AAA-CTG---ACTAATACATACATGTATTAAGTTTG-TTT--GCA-AT---TTTT-ATGATAT--GACACGGT-GAAGG--GT-CAACTTAACTGTGAT----A-TTT---TA-AA-TAAT--G-TGCCAAATA-CTT--GCAC-AT-GAT-TT--A---AAAATGTATGT-GTATG--CAATGTA------NGT-ACTA-TATA--TGTA-GCTAATGATTT--T--------TAT-GT-T-AT-------------TTAT-------T-ATG----------TA--TTT---TTATGT-C-AT-G-TC-G-GTC-AAA--AGCT-CTA-C-A---GAGC-T-TA-T-G-TTACT---G--TT---A-A-------ATA-----TCCG-AC--TTT-AAAT-A--AA-ATT-T----TCTGAA-CTTCT
gi|1 : ATA-TTAGGAATGCTACAAATTTAAATCAATTT-AAAAGTTTAATAAATAATTGGAATGGGG-AATCCTGTGTGTGT-TGCTCCTG-TA-GATCTTAGA-AAA-CCA-TCTTTCTNGAATCCTGTGTGTG--G-CTCCTGC-A-GATCT-TAGAAAA-T--CAT-CTTTCTTATA----GTTGT-AATTGCATA-CATT-CAAA-C-TGT-AAA-CTG---ACTAATACATACATGTATTAAGTTTG-TTT--GCA-AT---TTTT-ATGATAT--GACACGGT-GAAGG--GA-CAACTTAACTGTGAT----A-GTT---TA-AA-TAAT--A-AGCCAAATA-CTT--GCAC-AT-GAT-TT--A---CAAATGTATGT-GTATGAACAATGTA------TGT-ACTAGTATA--TGTA-GCTAATGATTTACTGAA-----TAT-GT-T-AT-------------TTAT-------T-ATG----------TA--TTT---CCATGT-C-AT-G-TC-G-GTC-AAA--AGCT-CTA-C-A---GAAC-T-TA-T-G-TTACT---G--TT---A-A-------ATA-----TCCG-AC--TTT-AAAT-A--AA-ATT-T----TCTGAA-CTTCT
gi|10 : agagAT-TT--A---AAAATGTATG-----------ATATA------TGT-AC------A--TGTA-----ATGATGT--T------------GT---AT-------------ATAT-------T-AT------------A--TTT---TTATATAC-CT-G-TCAG-GGC-AAA--AGCT-CTA-C-A---GAGC-T-TATT-G-CTATT---G--TG---ATA-------ATA-----TTAA-AT--TTTCAAAT-A--AA-CTT-TTGAATCTGAA-C
gi|11 : aaattttgttgaaaactAACGATTA--T--------TAT-GT-TTAT-------------TTAT-------T-ATG----------TA--TCT---TTATGT-C-AT-G-TC-G-GTC-ATA--AGCT-CTA-C-A---GAGCTT-TA-T-G-TTACT---GT-TT---T-A-------ATA-----TCCG-AC--TT---AAT-AATAA-ATT-T----TCTGAA--TTCT
gi|12 : ttatcatgtaaatagggcttaataaTTT--T--------TAT-GT-T-ATATGATGTAATAATTTAT-------G-ATG----------CA--TTT---TTATGT-C-AT-GATC---GTC-AGAACAGCTACTA-CAA---GAGC-T-TA-T-G-----------------A-A-------ATC-----ACCG-ACAATAT-GAAT-A--AA-ATTGTA---TCTGAA-Cgaa
gi|13 : gtattaagacT-C-AT-G-TT-G-GTC-AAA--AGGT-CTA-C-A---GAGC-T-TA-T-G-TTACT---GTTTT---A-T-------ATA-----TCCA-AC--TAT-AAAT-A--AA-ATT-T----TCTGAA-catgaa
gi|14 : attttttttctaatcataaTTA-TTC--GAATAT---ATCT-ATGATAT---ACACGGTTGAAGG--TTTCAACTTAACT-TGAT----A-TTT---TA-AA-TAAT--G-TGCCAAATA-CTG--CCAC-AA-GAT-TT--A---GAAATGTATGT-ATtctgagactttgacatc
gi|15 : gaTT--T--------TGT-GT-T-AT-------------CCAT-------TTATGCGGGTTTTTTTT--TTC---TTATGC-C-AT-G-TC-G-GTC-AAA--AGTT-CTA-C-A---GTGC-T-
gi|16 : aatatttcaatatttaaagatttata-AT-G-TC-A-TTC-AAA--AGCT-CCA-C-A---GAA--T-CA-T-A-GTATT---A---T---A-T-------GTC-----TCCA-AT--TTT-AAAT-A--AA-AAA-T----TTTGAA-TCTCcttg
gi|17 : -G-TC-G-GTA-AAT--TGCT-CTT-C-A---GAGC-T-AA-T-G-TTATTTATA--TT---G-A-------ATA-----TCCG-AC--TTT-AAAT-A--AATATT-A----TTTGAaatg
gi|18 : a-CTA---A---GAGC-T-TA-T-G-TTACT---G--TT---A----------------------------T-AATT-A--AA-ATT-T----TCTGAA-tt
gi|19 : GCA-CTA-C-A---GAGC-T-TA-T-G-TTACT---G--TTTC-A-T-------GTG-----TCCG-AC--TAT-AGAT-A--AA-ATT-T----TCTAAA--TTCTtctgaattctgaatgatatgaaaccacc
gi|2 : atATAGTTAGGAATGCTACAA-TTTAACTCAATTTTAAAAGTTTAATAAATACTTGAAATGGGA-AATCCTGTGTGTGT-TGCTCCTG-TA-GAT-TTAGA-AAAACCA-TCTTTCTgaa
gi|2 : AATCCTGTGTGTGTTG-CTCCTGT-A-GAT-T-TAGAAAAAC--CAT-CTTTCTTA------GTTGTGAATTGCATA-CATT-C-AAAC-TGTAAAA-CTG---ACT-ATACATACATGTATTAAGTTTGTTTT--GCA-AT---TTTT-ATGATAT--GACACGGT-GAGGG--AC-AAACTT-ACTGTGAT----AGTTT---TAGAA-TAATAAG-T-CCAAATA-CTT--GCAC-ATGGAT-TT--A---CAAATGTATGTGGTATGAACAATGTT------GGTAACTAGTATA--TGTAGGCTAATGGCTT--TTACTGAGGTAT-GT-T-AT-------------TTAT-------T-ATG----------TA---TT---TTATGT-CGAT-G-T--G-GTC-AAA--AGCT-CTA-C-ACATGAAC-T-CA-TGG-TTACT---GGTTT---AGA-------ATA-----T-CG-AC--TTT-TAAT-A--AA-ATT-T----TCTGAA-CTTCTtagttgtgaattgcatacattcaaactgtaaaactgactatacatacatgtattaagtttgttttgcaatttttatgatatgacacggtgagggacaaacttactgtgatagttttagaataataagtccaaatacttgcacatggatttacaaatgtatgtggtatgaacaatgttggtaactagtatatgtaggctaatggcttttactgaggtatgttatttattatgtattttatgtcgatgtggtcaaaagctctacacatgaactcatggttactggtttagaatatcgacttttaataaaattttctgaacttctgaaggctaaaaggtaa
gi|20 : atagttaggaatgctacaatttaactcaattttaaaagtttaataaatacttgaaatggga---TTATTT-T-AT-G-TT-G-GTC-AAA--AGCT-CT---------AGC-T-TA-T------------------------------TC-----TCCG-AC--TT---GAT-A--AA-ATG-T----TCTGAA-gaaggctaaaaggtaa
gi|21 : -C-AT-G-CT-G-GTC-AAA--AGCT-CTA-A-A---GAGC-T-TA-T-G-TTACT---GTTTT---A-A-------ATA-----TCCA-AC--TTT-AAactaaatg
gi|22 : --TT---A-A-------ATA-----TCCA-AC--ATT-AAAT-A--AA-ATT-T----TCTGAA-C
gi|23 : tgtactttgtt-G-TTACT---G--TTTT-A-A-------ATA-----TCCG-AC--TTT-AAGTCA--AA-ATT-T----TCCGAA-CTTCctgaaatttg
gi|24 : ATA-CTT--GCAC-AA-GAT-TT--A---AAAATGTATGT-GTGTG--
gi|3 : ATAGTTAGGAATGCTACAA-TTTAACTCAATTTTAAAAGTTTAATAAATACTTGAAATGGGA-AATCCTGTGTGTGT-TGCTCCTG-TA-GAT-TTAGA-AAAACCA-TCTTTCT
gi|3 : AATCCTGTGTGTGTTG-CTCCTGT-A-GAT-T-TAGAAAAAC--CAT-CTTTCTTA------GTTGTGAATTGCATA-CATT-C-AAAC-TGTAAAA-CTG---ACT-ATACATACATGTATTAAGTTTGTTTT--GCA-AT---TTTT-ATGATAT--GACACGGT-GAGGG--AC-AAACTT-ACTGTGAT----AGTTT---TAGAA-TAATAAG-T-CCAAATA-CTT--GCAC-ATGGAT-TT--A---CAAATGTATGTGGTATGAACAATGTT------GGTAACTAGTATA--TGTAGGCTAATGGCTT--TTACTGAGGTAT-GT-T-AT-------------TTAT-------T-ATG----------TA---TT---TTATGT-CGAT-G-T--G-GTC-AAA--AGCT-CTA-C-ACATGAAC-T-CA-TGG-TTACT---GGTTT---AGA-------ATA-----T-CG-AC--TTT-TAAT-A--AA-ATT-T----TCTGAA-CTTCTtagttgtgaattgcatacattcaaactgtaaaactgactatacatacatgtattaagtttgttttgcaatttttatgatatgacacggtgagggacaaacttactgtgatagttttagaataataagtccaaatacttgcacatggatttacaaatgtatgtggtatgaacaatgttggtaactagtatatgtaggctaatggcttttactgaggtatgttatttattatgtattttatgtcgatgtggtcaaaagctctacacatgaactcatggttactggtttagaatatcgacttttaataaaattttctgaacttctgaaggctaaaaggtaa
gi|4 : atagttaggaatgctacaatttaactcaattttaaaagtttaataaatacttgaaatgggaAATAATTGAATCGGTGCAATCCAGTGTGTGTCGGCTCCTGCCATGATGATAGGCAACAGCATTCCTTCTgaaggctaaaaggtaa
gi|4 : AATCCAGTGTGTGTCGGCTCCTGCCATGAT-GATAGGCAA-CAGCATTCCTTCTTA------GCTGT-A-CTTTATAACATTTCGAAAT-TGT-AAAACTGTCGACAAA---ACACATG-ATTTAGTTTA-------CA-ATGTATTTT-GTAATATCCGACATGGT-GAAGG--GT-CAACTTAACTGTGATCAAAA-GTTAAATA-AA-TAATC-G-TGCCTAATACCTT--GCAC-AT-GGTGGT--ACGTAAAATGTATGT--TATGT-TAGCGTAATCTTTAAT-ATTATTGTA--TGTA-G-------TTT--T--------T-T-GT----T-------------TTAT-------T-AT-----------CA--TT--------------T-G-TC-G-ACCAAAA--AGCT-CTA-C-A---GAGC-T-TT-T-GTTTACT---GC-TT---A-T-------ATATATTTTCCGAAC--TAT-AATA-A--AA-ATT-T----TCTGAA-tagctgtactttataacatttcgaaattgtaaaactgtcgacaaaacacatgatttagtttacaatgtattttgtaatatccgacatggtgaagggtcaacttaactgtgatcaaaagttaaataaataatcgtgcctaataccttgcacatggtggtacgtaaaatgtatgttatgttagcgtaatctttaatattattgtatgtagttttttgttttattatcatttgtcgaccaaaaagctctacagagcttttgtttactgcttatatatattttccgaactataataaaaattttctgaaatctgga
gi|5 : aataattgaatcggtgcTTTAAAAGTTTTATAAATAATTAGAATGGGG-AATCCTGTGTGTGT-GGCTCCTG-CA-GATCTTAG--AAAACCT-TCCTTatctgga
gi|5 : aaGAATCCTGTGTGTGTGG-CTCCTGC-A-GATCT-TAGAAAA-C--CTT-CCTTATTACATGTAGTTGT-A-CTACATA-CATT-CAAAAT-TGT-AAC-CTG---ACTAATACATA------TCA----TG-TTT--GCA-AT---TTTT-ATGATAT--GACATGGT-AAAGG--GT-CAACTTAACTGTGAT----A-TTT---TA-AA-TAGT--G-TGCCAAATA-CTT--GCAC-AT-GAT-TT--A---GAAATGTATGT-ATCTGT-CTGTGTA------CGT-A-TA-TATAAATGTA-GTTAAT--TTT--T--------TAG-TT-T-AT-------------TTATGTACCAGT-ATG----------TA--TTT---TTATGT-C-AT-G-TC-G-ATC-AAA--AGCT-CTA-C-A---GAGC-T-TA-T-G-CT--------------------------------TCCG-AC--TAT-AAAT-A--AA-ATT-T----TCTGAA-attacatgtagttgtactacatacattcaaaattgtaacctgactaatacatatcatgtttgcaatttttatgatatgacatggtaaagggtcaacttaactgtgatattttaaatagtgtgccaaatacttgcacatgatttagaaatgtatgtatctgtctgtgtacgtatatataaatgtagttaattttttagtttatttatgtaccagtatgtatttttatgtcatgtcgatcaaaagctctacagagcttatgcttccgactataaataaaattttctgaatctgaa
gi|6 : aatttaaaagttttataaataattagaatgggATA-TTAGGAATACTACAAATTTAAATCAATTT-AAAAGTTTAATAAATAATTGGAATGGGG-AATCCT-TGTGTGT-GGCTCCTG-CA-GATA-TAG--AAAACCA-TCTTTCTtctgaa
gi|6 : aGAATCCT-TGTGTGTGG-CTCCTGC-A-GAT-A-TAGAAAA-C--CAT-CTTTCTTA------GTTGT-A-CTGCAT--CATT-CAAAAT-TGT-AAA-CTG---ACTAATACATA------TTA----TG-TTT--GCA-AT---TTTT-ATGATAC--GACACGGT-GAAGG--GT-CAACTTAACTGTGAT----A-TTT---TA-AA-TAAT--G-TGCAAAATA-CTT--GCAC-AA-GAT-TTA-A---AAAATGTATGT-GT-TG-----TGTA------TGC-A------------TA-GCTGATG---T--T--------TAT-GT-T-AT-------------TTA--------T-GTA----------TT--TTT---TTATGT-C-AT-G-TC-G-GTC-AAA--AGCT-CTA-C-A---GAGC-T-TA-T-G-TTACT---G--TTTTAA-A-------ATA-----TCCG-AC--TTT-AAtagttgtactgcatcattcaaaattgtaaactgactaatacatattatgtttgcaatttttatgatacgacacggtgaagggtcaacttaactgtgatattttaaataatgtgcaaaatacttgcacaagatttaaaaaatgtatgtgttgtgtatgcatagctgatgtttatgttatttatgtatttttttatgtcatgtcggtcaaaagctctacagagcttatgttactgttttaaaatatccgactttaatgaat
gi|7 : aatattaggaatactacaaatttaaatcaatttaaaagtttaataaataattggaatgggAT-T-AAGCAAA-C--CAT-CCTTTTCA------GT-AT-GACTGCATA-CATT-CAAAAAATGT-AAA-ATG---ACAAA---ATACATA-A--AAGTATG-TTTCGGCA-AT---TTTT-ATGATAT--GACACGGT-GAAGGTTGT-ACACTT--TTG-GAT----A-TTT---TA-AATTATT--GTTGCCAAATA-CTTAAACACAAT-GAT-TTTAA---AAAATGTATGT---------AATGT-------TGA-A------------TA-GCTAA--ATTT--T--------TATCGTAT-AT-------------TTAT-------G-AAG----------TA--TTTTTCTTATGT-C-ATCG-TC-GCGTC-AAA--AGCT-CTA-C-A---GAGC-TATA-T-G-Ttgaat
gi|8 : tcTT---TA-AA-TAAT--G-TACCAAATA-CTT--GCAG-AT-GAT-TT--A---A------------------CAATGTA------------------A--TGTA-GCTAATG--TG--T--------TAT-GT-T-AT-------------TTATG------T-ATG----------TG--TCT---TTATGT-C-AT-G-TC-G-GTC-AAA--AGTT-CTA-C-A---GTGC-T-TA-T-G-TTACT---G--TT---ATATACATGTATA-----TCCG-AC--TAT-AAAT-A--CA-ATT-T----TCTGAATCTTatcctg
gi|9 : actcgaaattatatgaatctatgatatatacatctgtaactgttgtaaaatcattatttaaatgtgaatttttatttattgtttacaaAAA-C--CAT-CTTTCTCA------GTTGT-A-CTGCATA-CATT-CAAAAT-TGT-AAA-ATG---ACAAATACATATA------AAGTATG-TTT--GCA-AT---TTTTTATGATAT--GACACGGT-GAAGG--GT-TG---TAACTTTGAT----A-TTT---TA-AA-TTTT--G-TGCCAAATA-CTT--GCAC-AT-GAT-TT--A---AAAATGTA--T-GTATG-----TGTA------GG---CT--------TTTA----AATA--TT--T--------TAT-GT-T-AT-------------TTAT-------GAATG----------TATTTTT---TTATGT-C-AT-G-TC-G-GTC-AAA--AGCT-CTACC-A---GAGC-T-TA-T-G-TTCCT---taaaaaaagtcaat
Alignments
lowQualScore : 1 1 1 1 1 111 1 222222 111 1 1111111 11 777777777777777777777777777777777777 11 22222222 1111111111111 111111111 1111111111 33333333333333333
lowQualScore : 5 5 1 0 6 77 6 0 0 1 3 6 6 6 555 0 66 5 111111 888 5 5 5 66 0 5 888 44 3 8888888 3 2 8 66 4 777 4 66 4 66 44 7 9999 8 777 8 99 55 3 55 999 3 77 555 888888888888888888888888888888888888 999 22 44 77777777 3 444 6666666666666 555555555 3333333333 44 555 2 4 2 2 2 2 2 33 2 2 2 777 2 2 2 4 2 333 11111111111111111 55555 2 22 0 2 2 33 2 2 7777 33
lowQualScore : . . . . . .. . . . . . . . . ... . .. . ...... ... . . . .. . . ... .. . ....... . . . .. . ... . .. . .. .. . .... . ... . .. .. . .. ... . .. ... .................................... ... .. .. ........ . ... ............. ......... .......... .. ... . . . . . . . .. . . . ... . . . . . ... ................. ..... . .. . . . .. . . .... ..
lowQualScore : 0 5 0 6 7 77 0 6 8 0 3 7 7 7 333 0 99 0 222222 444 0 0 1 11 0 0 888 00 2 4444444 2 1 9 11 4 888 4 11 4 11 66 3 4444 9 000 0 00 66 6 00 000 3 99 888 000000000000000000000000000000000000 666 00 22 77777777 1 777 9999999999999 888888888 5555555555 22 000 5 7 2 2 2 2 2 11 0 0 0 000 0 0 1 0 0 777 22222222222222222 33333 1 99 5 1 4 22 4 4 4444 00
consensus : NNNNATAGTTAGGAATGCTACAAATTTAANTCAATTTTAAAAGTTTAATAAATAATTGGAATGGGG-AATCCTGTGTGTGT-NGCTCCTGCAGATCTTAGAAAAACCATCTTTCTNGAATCCTGTGTGTGTNG-CTCCTGC-A-GAT-T-TAGAAAA-C--CAT-CTTTCTTA------GTTGT-AACTGCATA-CATT-CAAAAC-TGT-AAA-CTG---ACTAATACATACATGTATTAAGTTTG-TTT--GCA-AT---TTTT-ATGATAT--GACACGGT-GAAGG--GT-CAACTTAACTGTGAT----A-TTT---TA-AATAAT--GT-GCCAAATA-CTTG--CACA-T-GAT-TT--A---AAAATGTATGT-GTATG--CAATGTA------NGT-ACTA-TATA--TGTA-GCTAATGATTT--T--------TAT-GT-T-AT-------------TTAT-------T-ATG----------TA--TTTTT---ATGT-C-AT-G-TC-G-GTC-AAA--AGCT-CTA-C-A---GAGC-T-TA-T-G-TTACT---G--TT---A-A-------ATA-----TCCG-AC--TTT-AAAT-A--AA-ATT-T----TCTGAA-CTTCT
Reference ( family-817 ) : NNNNATAGTTAGGAATGCTACAAATTTAANTCAATTTTAAAAGTTTAATAAATAATTGGAATGGGG-AATCCTGTGTGTGT-NGCTCCTGCAGAT-TTAGAAAAACCATCTTTCTNGAATCCTGTGTGTGTNG-CTCCTGC-A-GAT-T-TAGAAAA-C--CAT-CTTTCTTA------GTTGT-AACTGCATA-CATT-CAAAAC-TGT-AAA-CTG---ACTAATACATACATGTATTAAGTTTG-TTT--GCA-AT---TTTT-ATGATAT--GACACGGT-GAAGG--GT-CAACTTAACTGTGAT----A-TTT---TA-AATAAT--GT-GCCAAATA-CTTG--CACA-T-GAT-TT--A---AAAATGTATGT-GTATG--CAATGTA------NGT-ACTA-TATA--TGTA-GCTAATGATTT--T--------TAT-GT-T-AT-------------TTAT-------T-ATG----------TA--TTTTT---ATGT-C-AT-G-TC-G-GTC-AAA--AGCT-CTA-C-A---GAGC-T-TA-T-G-TTACT---G--TT---A-A-------ATA-----TCCG-AC--TTT-AAAT-A--AA-ATT-T----TCTGAA-CTTCT
gi|1 : ATA-TTAGGAATGCTACAAATTTAAATCAATTT-AAAAGTTTAATAAATAATTGGAATGGGG-AATCCTGTGTGTGT-TGCTCCTGTAGATCTTAGAAAA-CCATCTTTCTNGAATCCTGTGTGTG--G-CTCCTGC-A-GATCT-TAGAAAA-T--CAT-CTTTCTTATA----GTTGT-AATTGCATA-CATT-CAAA-C-TGT-AAA-CTG---ACTAATACATACATGTATTAAGTTTG-TTT--GCA-AT---TTTT-ATGATAT--GACACGGT-GAAGG--GA-CAACTTAACTGTGAT----A-GTT---TA-AATAAT--AA-GCCAAATA-CTTG--CACA-T-GAT-TT--A---CAAATGTATGT-GTATGAACAATGTA------TGT-ACTAGTATA--TGTA-GCTAATGATTTACTGAA-----TAT-GT-T-AT-------------TTAT-------T-ATG----------TA--TTTCC---ATGT-C-AT-G-TC-G-GTC-AAA--AGCT-CTA-C-A---GAAC-T-TA-T-G-TTACT---G--TT---A-A-------ATA-----TCCG-AC--TTT-AAAT-A--AA-ATT-T----TCTGAA-CTTCT
gi|10 : agagAT-TT--A---AAAATGTATG-----------ATATA------TGT-AC------A--TGTA-----ATGATGT--T------------GT---AT-------------ATAT-------T-AT------------A--TTTTT---ATATAC-CT-G-TCAG-GGC-AAA--AGCT-CTA-C-A---GAGC-T-TATT-G-CTATT---G--TG---ATA-------ATA-----TTAA-AT--TTTCAAAT-A--AA-CTT-TTGAATCTGAA-C
gi|11 : aaattttgttgaaaactAACGATTA--T--------TAT-GT-TTAT-------------TTAT-------T-ATG----------TA--TCTTT---ATGT-C-AT-G-TC-G-GTC-ATA--AGCT-CTA-C-A---GAGCTT-TA-T-G-TTACT---GT-TT---T-A-------ATA-----TCCG-AC--TT---AAT-AATAA-ATT-T----TCTGAA--TTCT
gi|12 : ttatcatgtaaatagggcttaataaTTT--T--------TAT-GT-T-ATATGATGTAATAATTTAT-------G-ATG----------CA--TTTTT---ATGT-C-AT-GATC---GTC-AGAACAGCTACTA-CAA---GAGC-T-TA-T-G-----------------A-A-------ATC-----ACCG-ACAATAT-GAAT-A--AA-ATTGTA---TCTGAA-Cgaa
gi|13 : gtattaagacT-C-AT-G-TT-G-GTC-AAA--AGGT-CTA-C-A---GAGC-T-TA-T-G-TTACT---GTTTT---A-T-------ATA-----TCCA-AC--TAT-AAAT-A--AA-ATT-T----TCTGAA-catgaa
gi|14 : attttttttctaatcataaTTA-TTC--GAATAT---ATCT-ATGATAT---ACACGGTTGAAGG--TTTCAACTTAACT-TGAT----A-TTT---TA-AATAAT--GT-GCCAAATA-CTGC--CACA-A-GAT-TT--A---GAAATGTATGT-ATtctgagactttgacatc
gi|15 : gaTT--T--------TGT-GT-T-AT-------------CCAT-------TTATGCGGGTTTTTTTT--TTCTT---ATGC-C-AT-G-TC-G-GTC-AAA--AGTT-CTA-C-A---GTGC-T-
gi|16 : aatatttcaatatttaaagatttata-AT-G-TC-A-TTC-AAA--AGCT-CCA-C-A---GAA--T-CA-T-A-GTATT---A---T---A-T-------GTC-----TCCA-AT--TTT-AAAT-A--AA-AAA-T----TTTGAA-TCTCcttg
gi|17 : -G-TC-G-GTA-AAT--TGCT-CTT-C-A---GAGC-T-AA-T-G-TTATTTATA--TT---G-A-------ATA-----TCCG-AC--TTT-AAAT-A--AATATT-A----TTTGAaatg
gi|18 : a-CTA---A---GAGC-T-TA-T-G-TTACT---G--TT---A----------------------------T-AATT-A--AA-ATT-T----TCTGAA-tt
gi|19 : GCA-CTA-C-A---GAGC-T-TA-T-G-TTACT---G--TTTC-A-T-------GTG-----TCCG-AC--TAT-AGAT-A--AA-ATT-T----TCTAAA--TTCTtctgaattctgaatgatatgaaaccacc
gi|2 : atATAGTTAGGAATGCTACAA-TTTAACTCAATTTTAAAAGTTTAATAAATACTTGAAATGGGA-AATCCTGTGTGTGT-TGCTCCTGTAGAT-TTAGAAAAACCATCTTTCTgaa
gi|2 : AATCCTGTGTGTGTTG-CTCCTGT-A-GAT-T-TAGAAAAAC--CAT-CTTTCTTA------GTTGTGAATTGCATA-CATT-C-AAAC-TGTAAAA-CTG---ACT-ATACATACATGTATTAAGTTTGTTTT--GCA-AT---TTTT-ATGATAT--GACACGGT-GAGGG--AC-AAACTT-ACTGTGAT----AGTTT---TAGAATAATAAGT--CCAAATA-CTTG--CACA-TGGAT-TT--A---CAAATGTATGTGGTATGAACAATGTT------GGTAACTAGTATA--TGTAGGCTAATGGCTT--TTACTGAGGTAT-GT-T-AT-------------TTAT-------T-ATG----------TA---TTTT---ATGT-CGAT-G-T--G-GTC-AAA--AGCT-CTA-C-ACATGAAC-T-CA-TGG-TTACT---GGTTT---AGA-------ATA-----T-CG-AC--TTT-TAAT-A--AA-ATT-T----TCTGAA-CTTCTtagttgtgaattgcatacattcaaactgtaaaactgactatacatacatgtattaagtttgttttgcaatttttatgatatgacacggtgagggacaaacttactgtgatagttttagaataataagtccaaatacttgcacatggatttacaaatgtatgtggtatgaacaatgttggtaactagtatatgtaggctaatggcttttactgaggtatgttatttattatgtattttatgtcgatgtggtcaaaagctctacacatgaactcatggttactggtttagaatatcgacttttaataaaattttctgaacttctgaaggctaaaaggtaa
gi|20 : atagttaggaatgctacaatttaactcaattttaaaagtttaataaatacttgaaatgggaTT---ATTT-T-AT-G-TT-G-GTC-AAA--AGCT-CT---------AGC-T-TA-T------------------------------TC-----TCCG-AC--TT---GAT-A--AA-ATG-T----TCTGAA-gaaggctaaaaggtaa
gi|21 : -C-AT-G-CT-G-GTC-AAA--AGCT-CTA-A-A---GAGC-T-TA-T-G-TTACT---GTTTT---A-A-------ATA-----TCCA-AC--TTT-AAactaaatg
gi|22 : --TT---A-A-------ATA-----TCCA-AC--ATT-AAAT-A--AA-ATT-T----TCTGAA-C
gi|23 : tgtactttgtt-G-TTACT---G--TTTT-A-A-------ATA-----TCCG-AC--TTT-AAGTCA--AA-ATT-T----TCCGAA-CTTCctgaaatttg
gi|24 : ATA-CTTG--CACA-A-GAT-TT--A---AAAATGTATGT-GTGTG--
gi|3 : ATAGTTAGGAATGCTACAA-TTTAACTCAATTTTAAAAGTTTAATAAATACTTGAAATGGGA-AATCCTGTGTGTGT-TGCTCCTGTAGAT-TTAGAAAAACCATCTTTCT
gi|3 : AATCCTGTGTGTGTTG-CTCCTGT-A-GAT-T-TAGAAAAAC--CAT-CTTTCTTA------GTTGTGAATTGCATA-CATT-C-AAAC-TGTAAAA-CTG---ACT-ATACATACATGTATTAAGTTTGTTTT--GCA-AT---TTTT-ATGATAT--GACACGGT-GAGGG--AC-AAACTT-ACTGTGAT----AGTTT---TAGAATAATAAGT--CCAAATA-CTTG--CACA-TGGAT-TT--A---CAAATGTATGTGGTATGAACAATGTT------GGTAACTAGTATA--TGTAGGCTAATGGCTT--TTACTGAGGTAT-GT-T-AT-------------TTAT-------T-ATG----------TA---TTTT---ATGT-CGAT-G-T--G-GTC-AAA--AGCT-CTA-C-ACATGAAC-T-CA-TGG-TTACT---GGTTT---AGA-------ATA-----T-CG-AC--TTT-TAAT-A--AA-ATT-T----TCTGAA-CTTCTtagttgtgaattgcatacattcaaactgtaaaactgactatacatacatgtattaagtttgttttgcaatttttatgatatgacacggtgagggacaaacttactgtgatagttttagaataataagtccaaatacttgcacatggatttacaaatgtatgtggtatgaacaatgttggtaactagtatatgtaggctaatggcttttactgaggtatgttatttattatgtattttatgtcgatgtggtcaaaagctctacacatgaactcatggttactggtttagaatatcgacttttaataaaattttctgaacttctgaaggctaaaaggtaa
gi|4 : atagttaggaatgctacaatttaactcaattttaaaagtttaataaatacttgaaatgggaAATAATTGAATCGGTGCAATCCAGTGTGTGTCGGCTCCTGCgaaggctaaaaggtaa
gi|4 : AATCCAGTGTGTGTCGGCTCCTGCCATGAT-GATAGGCAA-CAGCATTCCTTCTTA------GCTGT-A-CTTTATAACATTTCGAAAT-TGT-AAAACTGTCGACAAA---ACACATG-ATTTAGTTTA-------CA-ATGTATTTT-GTAATATCCGACATGGT-GAAGG--GT-CAACTTAACTGTGATCAAAA-GTTAAATA-AATAATC-GT-GCCTAATACCTTG--CACA-T-GGTGGT--ACGTAAAATGTATGT--TATGT-TAGCGTAATCTTTAAT-ATTATTGTA--TGTA-G-------TTT--T--------T-T-GT----T-------------TTAT-------T-AT-----------CA--TT--------------T-G-TC-G-ACCAAAA--AGCT-CTA-C-A---GAGC-T-TT-T-GTTTACT---GC-TT---A-T-------ATATATTTTCCGAAC--TAT-AATA-A--AA-ATT-T----TCTGAA-catgatgataggcaacagcattccttcttagctgtactttataacatttcgaaattgtaaaactgtcgacaaaacacatgatttagtttacaatgtattttgtaatatccgacatggtgaagggtcaacttaactgtgatcaaaagttaaataaataatcgtgcctaataccttgcacatggtggtacgtaaaatgtatgttatgttagcgtaatctttaatattattgtatgtagttttttgttttattatcatttgtcgaccaaaaagctctacagagcttttgtttactgcttatatatattttccgaactataataaaaattttctgaaatctgga
gi|5 : aataattgaatcggtgcTTTAAAAGTTTTATAAATAATTAGAATGGGG-AATCCTGTGTGTGT-GGCTCCTGCAGATCTTAG-AAAACCTTCCTTatctgga
gi|5 : aaGAATCCTGTGTGTGTGG-CTCCTGC-A-GATCT-TAGAAAA-C--CTT-CCTTATTACATGTAGTTGT-A-CTACATA-CATT-CAAAAT-TGT-AAC-CTG---ACTAATACATA------TCA----TG-TTT--GCA-AT---TTTT-ATGATAT--GACATGGT-AAAGG--GT-CAACTTAACTGTGAT----A-TTT---TA-AATAGT--GT-GCCAAATA-CTTG--CACA-T-GAT-TT--A---GAAATGTATGT-ATCTGT-CTGTGTA------CGT-A-TA-TATAAATGTA-GTTAAT--TTT--T--------TAG-TT-T-AT-------------TTATGTACCAGT-ATG----------TA--TTTTT---ATGT-C-AT-G-TC-G-ATC-AAA--AGCT-CTA-C-A---GAGC-T-TA-T-G-CT--------------------------------TCCG-AC--TAT-AAAT-A--AA-ATT-T----TCTGAA-attacatgtagttgtactacatacattcaaaattgtaacctgactaatacatatcatgtttgcaatttttatgatatgacatggtaaagggtcaacttaactgtgatattttaaatagtgtgccaaatacttgcacatgatttagaaatgtatgtatctgtctgtgtacgtatatataaatgtagttaattttttagtttatttatgtaccagtatgtatttttatgtcatgtcgatcaaaagctctacagagcttatgcttccgactataaataaaattttctgaatctgaa
gi|6 : aatttaaaagttttataaataattagaatgggATA-TTAGGAATACTACAAATTTAAATCAATTT-AAAAGTTTAATAAATAATTGGAATGGGG-AATCCT-TGTGTGT-GGCTCCTGCAGAT-ATAG-AAAACCATCTTTCTtctgaa
gi|6 : aGAATCCT-TGTGTGTGG-CTCCTGC-A-GAT-A-TAGAAAA-C--CAT-CTTTCTTA------GTTGT-A-CTGCAT--CATT-CAAAAT-TGT-AAA-CTG---ACTAATACATA------TTA----TG-TTT--GCA-AT---TTTT-ATGATAC--GACACGGT-GAAGG--GT-CAACTTAACTGTGAT----A-TTT---TA-AATAAT--GT-GCAAAATA-CTTG--CACA-A-GAT-TTA-A---AAAATGTATGT-GT-TG-----TGTA------TGC-A------------TA-GCTGATG---T--T--------TAT-GT-T-AT-------------TTA--------T-GTA----------TT--TTTTT---ATGT-C-AT-G-TC-G-GTC-AAA--AGCT-CTA-C-A---GAGC-T-TA-T-G-TTACT---G--TTTTAA-A-------ATA-----TCCG-AC--TTT-AAtagttgtactgcatcattcaaaattgtaaactgactaatacatattatgtttgcaatttttatgatacgacacggtgaagggtcaacttaactgtgatattttaaataatgtgcaaaatacttgcacaagatttaaaaaatgtatgtgttgtgtatgcatagctgatgtttatgttatttatgtatttttttatgtcatgtcggtcaaaagctctacagagcttatgttactgttttaaaatatccgactttaatgaat
gi|7 : aatattaggaatactacaaatttaaatcaatttaaaagtttaataaataattggaatgggAT-T-AAGCAAA-C--CAT-CCTTTTCA------GT-AT-GACTGCATA-CATT-CAAAAAATGT-AAA-ATG---ACAAA---ATACATA-A--AAGTATG-TTTCGGCA-AT---TTTT-ATGATAT--GACACGGT-GAAGGTTGT-ACACTT--TTG-GAT----A-TTT---TA-AATTATT-GTTGCCAAATA-CTTAAACACAAT-GAT-TTTAA---AAAATGTATGT---------AATGT-------TGA-A------------TA-GCTAA--ATTT--T--------TATCGTAT-AT-------------TTAT-------G-AAG----------TA--TTTTTCTTATGT-C-ATCG-TC-GCGTC-AAA--AGCT-CTA-C-A---GAGC-TATA-T-G-Ttgaat
gi|8 : tcTT---TA-AATAAT--GT-ACCAAATA-CTTG--CAGA-T-GAT-TT--A---A------------------CAATGTA------------------A--TGTA-GCTAATG--TG--T--------TAT-GT-T-AT-------------TTATG------T-ATG----------TG--TCTTT---ATGT-C-AT-G-TC-G-GTC-AAA--AGTT-CTA-C-A---GTGC-T-TA-T-G-TTACT---G--TT---ATATACATGTATA-----TCCG-AC--TAT-AAAT-A--CA-ATT-T----TCTGAATCTTatcctg
gi|9 : actcgaaattatatgaatctatgatatatacatctgtaactgttgtaaaatcattatttaaatgtgaatttttatttattgtttacaaAAA-C--CAT-CTTTCTCA------GTTGT-A-CTGCATA-CATT-CAAAAT-TGT-AAA-ATG---ACAAATACATATA------AAGTATG-TTT--GCA-AT---TTTTTATGATAT--GACACGGT-GAAGG--GT-TG---TAACTTTGAT----A-TTT---TA-AATTTT--GT-GCCAAATA-CTTG--CACA-T-GAT-TT--A---AAAATGTA--T-GTATG-----TGTA------GG---CT--------TTTA----AATA--TT--T--------TAT-GT-T-AT-------------TTAT-------GAATG----------TATTTTTTT---ATGT-C-AT-G-TC-G-GTC-AAA--AGCT-CTACC-A---GAGC-T-TA-T-G-TTCCT---taaaaaaagtcaat
blockSeqs : G A C T C CG C A T G C T GA A AG T CATGTA GAA A T G AA A A TCG AA T CATGTAT A T T CG T GTA T CC T TT TC A CAAA G AAA G AA TG C AA TG G TA CGT TATGTTAGCGTAATCTTTAATATTATTGTA GGC GA . TACTGAGG C TT ATGATGTAATAAT GTACCAGT CGGGTTTTTT TT CTT A G C A A C A AC A C A CAT T A T G T TAT TTATATACATGT TATTT A AA C C AT T G TGAA TC
blockSeqs : G . C T . T . A T . . . CT A . . . GAA . . A C A . . TA T CATGTAT A T T . . . . . . . A A . G . G AA G . . TG . A . GGTATGAACAATGTTGGTAACTAGTATA GGC GA . TACTGAGG . AT . TT . . . . G . . . . . . . . . CAT . . . G . . GTTTAGA . . . . . . . . A C
blockSeqs : . . A T . T . . C . . . T . . . . GA . . A C . . . TA T CATGAT A T . . . . . . . . A A . . . . C G . . AT . . . GGTATGAACAATGTTGGTAACTAGTATA GT GG . . . T . GT . . . . . . . . . . . . . . . . . . . . . GTTTAGA . . . . . . . . . C
blockSeqs : . . G . . G . . . T . . . . A . . A T . . . AA T CATAA A T . . . . . . . . C A . . . . T G . . A . . . ATCTGTCTGTGTACGTATATATAAA GC GG . . . T . GA . . . . . . . . . . . . . . . . . . . . . TTTTAAA . . . . . . . . . T
blockSeqs : . G G . . . A . . . . A . . A T . . . AA T TA A A . . . . . . . . C A . . . . . G . . A . . . GTATGTGTAGGCT GC G . . . T . T . . . . . . . . . . . . . . . . . . . . . TTTTAT . . . . . . . . . C
blockSeqs : T . . . . A . . . T . . . T . T . A . . . . . . . . C . . . . . . A . . T . . . GTTGTGTATGCA GC A . . . T . T . . . . . . . . . . . . . . . . . . . . . TTTCAT . . . . . . . . . C
blockSeqs : . . . . A . . . T . . . T . T . . . . . . . . . . A . . . . . . G . . T . . . ATATATGTACA G G . . . T . G . . . . . . . . . . . . . . . . . . . . . TTTTAA . . . . . . . . . C
blockSeqs : . . . . . . . . . T . . . . . . . . . A . . . AATGTTGAA . A . . . T . T . . . . . . . . . . . . . . . . . . . . . TTTTAA . . . . . . . . . C
blockSeqs : . . . . . . T . . . CAATGTAA . . . . . T . T . . . . . . . . . . . . . . . . . . . . . TGATA . . . . . . . . . .
blockSeqs : . . T . . . . . . . T . T . . . . . . . . . . . . . . . . . . . . . TTTTA . . . . . . . . . .
blockSeqs : . . . . . . . . T . . . . . . . . . . . . . . . . . . . . . CTTAT . . . . . . . . .
blockSeqs : . . . . . G . . . . . . . . . . . . . . . . . . . . . TTGA . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . TTAA . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . TAT . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . TTA . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . AA . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . .
blockSeqCons : T** ****** A** GTATGCAATGTGGTATATACA*************** ** ******** TTTTAA***********
originalCons : NNNNATAGTTAGGAATGCTACAAATTTAANTCAATTTTAAAAGTTTAATAAATAATTGGAATGGGG-AATCCTGTGTGTGT-NGCTCCTGCAGATCTTAGAAAAACCATCTTTCTNGAATCCTGTGTGTGTNG-CTCCTGC-A-GAT-T-TAGAAAA-C--CAT-CTTTCTTA------GTTGT-AACTGCATA-CATT-CAAAAC-TGT-AAA-CTG---ACTAATACATACATGTATTAAGTTTG-TTT--GCA-AT---TTTT-ATGATAT--GACACGGT-GAAGG--GT-CAACTTAACTGTGAT----A-TTT---TA-AATAAT--GT-GCCAAATA-CTTG--CACA-T-GAT-TT--A---AAAATGTATGT-GTATG--CAATGTA------NGT-ACTA-TATA--TGTA-GCTAATGATTT--T--------TAT-GT-T-AT-------------TTAT-------T-ATG----------TA--TTTTT---ATGT-C-AT-G-TC-G-GTC-AAA--AGCT-CTA-C-A---GAGC-T-TA-T-G-TTACT---G--TT---A-A-------ATA-----TCCG-AC--TTT-AAAT-A--AA-ATT-T----TCTGAA-CTTCT
finalCons : NNNNATAGTTAGGAATGCTACAAATTTAANTCAATTTTAAAAGTTTAATAAATAATTGGAATGGGG-AATCCTGTGTGTGT-NGCTCCTGCAGATCTTAGAAAAACCATCTTTCTNGAATCCTGTGTGTGTNG-CTCCTGC-A-GATT--TAGAAAA-C--CAT-CTTTCTTA------GTTGTA--CTGCATA-CATT-CAAAAC-TGT-AAA-CTG---ACTAATACATACATGTATTAAGTTTG-TTT--GCA-AT---TTTT-ATGATAT--GACACGGT-GAAGG--GT-CAACTTAACTGTGAT----A-TTT---TA-AATAAT--GT-GCCAAATA-CTTG--CACA-T-GAT-TT--A---AAAATGTATGTGTATGCAATGTGGTATATACA---------------TGTA-GCTAATGATTT--T--------TAT-GT-T-AT-------------TTAT-------T-ATG----------TA--TTTTT---ATGT-C-AT-G-TC-G-GTC-AAA--AGCT-CTA-C-A---GAGC-T-TA-T-G-TTACT---GTTTTAA-----------ATA-----TCCG-AC--TTT-AAAT-A--AA-ATT-T----TCTGAA-CTTCT
Alignments
lowQualScore : 111111111111111111111111111111
lowQualScore : 1 1 1 11 2 111 1 111111 11 1 1 1111111 11 000000000000000000000000000000 11 11 33333333 1111111111111 111111111 1111111111 111111111
lowQualScore : 5 5 1 0 6 77 55 0 1 3 6 6 6 555 1 66 5 66 444444 5 88 5 5 1 66 0 5 888 44 3 8888888 3 2 8 66 4 777 4 66 4 66 44 7 9999 8 777 8 4 55 4 1 3 55 3 7 3 77 555 888888888888888888888888888888 00 22 3 44 00000000 3 3 3 6666666666666 555555555 3333333333 44 555 2 4 55 2 2 2 33 2 2 2 2 777 2 2 2 4 2 2 4444 444444444 333 2 22 0 2 2 33 2 2 7777 33
lowQualScore : . . . . . .. .. . . . . . . ... . .. . .. ...... . .. . . . .. . . ... .. . ....... . . . .. . ... . .. . .. .. . .... . ... . . .. . . . .. . . . .. ... .............................. .. .. . .. ........ . . . ............. ......... .......... .. ... . . .. . . . .. . . . . ... . . . . . . .... ......... ... . .. . . . .. . . .... ..
lowQualScore : 0 5 0 6 7 77 88 4 0 3 7 7 7 333 4 99 0 99 444444 0 88 0 0 2 11 0 0 888 00 2 4444444 2 1 9 11 4 888 4 11 4 11 66 3 4444 9 000 0 0 00 0 6 6 00 6 3 3 99 888 888888888888888888888888888888 55 11 1 22 88888888 1 1 1 9999999999999 888888888 5555555555 22 000 5 7 33 2 2 2 11 1 0 0 0 000 0 0 1 0 0 0 2222 777777777 777 1 99 5 1 4 22 4 4 4444 00
consensus : NNNNATAGTTAGGAATGCTACAAATTTAANTCAATTTTAAAAGTTTAATAAATAATTGGAATGGGG-AATCCTGTGTGTGT-NGCTCCTGCAGATCTTAGAAAAACCATCTTTCTNGAATCCTGTGTGTGTNG-CTCCTGC-A-GAT-T-TAG-AAAAC--CAT-CTTTCT--TA------GT-TGT--ACTGCATA-CATT-CAAAAC-TGT-AAA-CTG---ACTAATACATACATGTATTAAGTTTG-TTT--GCA-AT---TTTT-ATGATAT--GACACGGT-GAAGG--GT-CAACTTAACTGTGAT----A-TTT---TA-AA-TAAT--G-TGCCAAATAC-TT--GCAC-AT-GATT-T--A---AAAATGTATGT-GTATG--CAATG-TG-GTA--TA-TAC--ATGTA-GCTAATGATT-T--T--------TAT-GT-T-AT-------------TTAT-------T-ATG----------TA--TTT---TTATGT-C-AT--G-TC-G-GTCAAA--A-GCT-CTA-C-A---GAGC-T-TA-T-G-TTACT-GTTT-T-A-A-----ATA---TCCG-AC--TTT-AAAT-A--AA-ATT-T----TCTGAA-CTTCT
Reference ( family-817 ) : NNNNATAGTTAGGAATGCTACAAATTTAANTCAATTTTAAAAGTTTAATAAATAATTGGAATGGGG-AATCCTGTGTGTGT-NGCTCCTGCAGATCTTAGAAAAACCATCTTTCTNGAATCCTGTGTGTGTNG-CTCCTGC-A-GAT-T-TAG-AAAAC--CAT-CTTTCT--TA------GT-TGT--ACTGCATA-CATT-CAAAAC-TGT-AAA-CTG---ACTAATACATACATGTATTAAGTTTG-TTT--GCA-AT---TTTT-ATGATAT--GACACGGT-GAAGG--GT-CAACTTAACTGTGAT----A-TTT---TA-AA-TAAT--G-TGCCAAATAC-TT--GCAC-AT-GATT-T--A---AAAATGTATGT-GTATG--CAATG-TG-GTA--TA-TAC--ATGTA-GCTAATGATT-T--T--------TAT-GT-T-AT-------------TTAT-------T-ATG----------TA--TTT---TTATGT-C-AT--G-TC-G-GTCAAA--A-GCT-CTA-C-A---GAGC-T-TA-T-G-TTACT-GTTT-T-A-A-----ATA---TCCG-AC--TTT-AAAT-A--AA-ATT-T----TCTGAA-CTTCT
gi|1 : ATA-TTAGGAATGCTACAAATTTAAATCAATTT-AAAAGTTTAATAAATAATTGGAATGGGG-AATCCTGTGTGTGT-TGCTCCTGTAGATCTTAG-AAAACCATCTTTCTNGAATCCTGTGTGTG--G-CTCCTGC-A-GATCT-TAG-AAAAT--CAT-CTTTCTTATA------GT-TGTA-ATTGCATA-CATT-C-AAAC-TGT-AAA-CTG---ACTAATACATACATGTATTAAGTTTG-TTT--GCA-AT---TTTT-ATGATAT--GACACGGT-GAAGG--GA-CAACTTAACTGTGAT----A-GTT---TA-AA-TAAT--A-AGCCAAATAC-TT--GCAC-AT-GATT-T--A---CAAATGTATGT-GTATGAACAATG-TATGTAC-TAGTAT--ATGTA-GCTAATGATT-TACTGAA-----TAT-GT-T-AT-------------TTAT-------T-ATG----------TA--TTT---CCATGT-C-AT--G-TC-G-GTCAAA--A-GCT-CTA-C-A---GAAC-T-TA-T-G-TTACT-G--T-T-A-A-----ATA---TCCG-AC--TTT-AAAT-A--AA-ATT-T----TCTGAA-CTTCT
gi|10 : agagATT-T--A---AAAATGTATG-----------ATA-T----A--TG-TAC--ATGTA-----ATGATG-T--T------------GT---AT-------------ATAT-------T-AT------------A--TTT---TTATATAC-CT--G-TCAG-GGCAAA--A-GCT-CTA-C-A---GAGC-T-TATT-G-CTATT-GTGA-T---A-----ATA---TTAA-AT--TTTCAAAT-A--AA-CTT-TTGAATCTGAA-C
gi|11 : aaattttgttgaaaactAACGATT-A--T--------TAT-GT-TTAT-------------TTAT-------T-ATG----------TA--TCT---TTATGT-C-AT--G-TC-G-GTCATA--A-GCT-CTA-C-A---GAGCTT-TA-T-G-TTACT-GTTT-T---A-----ATA---TCCG-AC--TT---AAT-AATAA-ATT-T----TCTGAA--TTCT
gi|12 : ttatcatgtaaatagggcttaataaTT-T--T--------TAT-GT-T-ATATGATGTAATAATTTAT-------G-ATG----------CA--TTT---TTATGT-C-AT--GATC---GTCAGAACA-GCTACTA-CAA---GAGC-T-TA-T-G--------------A-A-----ATC---ACCG-ACAATAT-GAAT-A--AA-ATTGTA---TCTGAA-Cgaa
gi|13 : gtattaagacT-C-AT--G-TT-G-GTCAAA--A-GGT-CTA-C-A---GAGC-T-TA-T-G-TTACT-GTTT-T-A-T-----ATA---TCCA-AC--TAT-AAAT-A--AA-ATT-T----TCTGAA-catgaa
gi|14 : attttttttctaatcataaTTA-TTC--GAATAT---ATCT-ATGATAT---ACACGGTTGAAGG--TTTCAACTTAACT-TGAT----A-TTT---TA-AA-TAAT--G-TGCCAAATAC-TG--CCAC-AA-GATT-T--A---GAAATGTATGT-ATtctgagactttgacatc
gi|15 : gaT-T--T--------TGT-GT-T-AT-------------CCAT-------TTATGCGGGTTTTTTTT--TTC---TTATGC-C-AT--G-TC-G-GTCAAA--A-GTT-CTA-C-A---GTGC-T-
gi|16 : aatatttcaatatttaaagatttata-AT--G-TC-A-TTCAAA--A-GCT-CCA-C-A---GA------A-T-C-ATAGT-ATTA-T-A-T-----GTC---TCCA-AT--TTT-AAAT-A--AA-AAA-T----TTTGAA-TCTCcttg
gi|17 : --G-TC-G-GTAAAT--T-GCT-CTT-C-A---GAGC-T-AA-T-G-TTATTTATAT-T-G-A-----ATA---TCCG-AC--TTT-AAAT-A--AATATT-A----TTTGAaatg
gi|18 : a-CTA---A---GAGC-T-TA-T-G-TTACT-G--T-T-A------------------------T-AATT-A--AA-ATT-T----TCTGAA-tt
gi|19 : -GCA-CTA-C-A---GAGC-T-TA-T-G-TTACT-GTTT-C-A-T-----GTG---TCCG-AC--TAT-AGAT-A--AA-ATT-T----TCTAAA--TTCTtctgaattctgaatgatatgaaaccacc
gi|2 : atATAGTTAGGAATGCTACAA-TTTAACTCAATTTTAAAAGTTTAATAAATACTTGAAATGGGA-AATCCTGTGTGTGT-TGCTCCTGTAGAT-TTAGAAAAACCATCTTTCTgaa
gi|2 : AATCCTGTGTGTGTTG-CTCCTGT-A-GAT-T-TAGAAAAAC--CAT-CTTTCT--TA------GT-TGTGAATTGCATA-CATT-C-AAAC-TGTAAAA-CTG---ACT-ATACATACATGTATTAAGTTTGTTTT--GCA-AT---TTTT-ATGATAT--GACACGGT-GAGGG--AC-AAACTT-ACTGTGAT----AGTTT---TAGAA-TAATAAG-T-CCAAATAC-TT--GCAC-ATGGATT-T--A---CAAATGTATGTGGTATGAACAATGTTG-GTAACTAGTAT--ATGTAGGCTAATGGCT-T--TTACTGAGGTAT-GT-T-AT-------------TTAT-------T-ATG----------TA---TT---TTATGT-CGAT--G-T--G-GTCAAA--A-GCT-CTA-C-ACATGAAC-T-CA-TGG-TTACT-GGTT-T-AGA-----ATA---T-CG-AC--TTT-TAAT-A--AA-ATT-T----TCTGAA-CTTCTtagttgtgaattgcatacattcaaactgtaaaactgactatacatacatgtattaagtttgttttgcaatttttatgatatgacacggtgagggacaaacttactgtgatagttttagaataataagtccaaatacttgcacatggatttacaaatgtatgtggtatgaacaatgttggtaactagtatatgtaggctaatggcttttactgaggtatgttatttattatgtattttatgtcgatgtggtcaaaagctctacacatgaactcatggttactggtttagaatatcgacttttaataaaattttctgaacttctgaaggctaaaaggtaa
gi|20 : atagttaggaatgctacaatttaactcaattttaaaagtttaataaatacttgaaatggga---TTATTT-T-AT--G-TT-G-GTCAAA--A-GCT-CT---------AGC-T-TA-T-------------------------TC---TCCG-AC--TT---GAT-A--AA-ATG-T----TCTGAA-gaaggctaaaaggtaa
gi|21 : -C-AT--G-CT-G-GTCAAA--A-GCT-CTA-A-A---GAGC-T-TA-T-G-TTACT-GTTT-T-A-A-----ATA---TCCA-AC--TTT-AAactaaatg
gi|22 : T-GTTT-T-A-A-----ATA---TCCA-AC--ATT-AAAT-A--AA-ATT-T----TCTGAA-C
gi|23 : tgtactt-G-TTACT-GTTT-T-A-A-----ATA---TCCG-AC--TTT-AAGTCA--AA-ATT-T----TCCGAA-CTTCctgaaatttg
gi|24 : ATAC-TT--GCAC-AA-GATT-T--A---AAAATGTATGT-GTGTG--
gi|3 : ATAGTTAGGAATGCTACAA-TTTAACTCAATTTTAAAAGTTTAATAAATACTTGAAATGGGA-AATCCTGTGTGTGT-TGCTCCTGTAGAT-TTAGAAAAACCATCTTTCT
gi|3 : AATCCTGTGTGTGTTG-CTCCTGT-A-GAT-T-TAGAAAAAC--CAT-CTTTCT--TA------GT-TGTGAATTGCATA-CATT-C-AAAC-TGTAAAA-CTG---ACT-ATACATACATGTATTAAGTTTGTTTT--GCA-AT---TTTT-ATGATAT--GACACGGT-GAGGG--AC-AAACTT-ACTGTGAT----AGTTT---TAGAA-TAATAAG-T-CCAAATAC-TT--GCAC-ATGGATT-T--A---CAAATGTATGTGGTATGAACAATGTTG-GTAACTAGTAT--ATGTAGGCTAATGGCT-T--TTACTGAGGTAT-GT-T-AT-------------TTAT-------T-ATG----------TA---TT---TTATGT-CGAT--G-T--G-GTCAAA--A-GCT-CTA-C-ACATGAAC-T-CA-TGG-TTACT-GGTT-T-AGA-----ATA---T-CG-AC--TTT-TAAT-A--AA-ATT-T----TCTGAA-CTTCTtagttgtgaattgcatacattcaaactgtaaaactgactatacatacatgtattaagtttgttttgcaatttttatgatatgacacggtgagggacaaacttactgtgatagttttagaataataagtccaaatacttgcacatggatttacaaatgtatgtggtatgaacaatgttggtaactagtatatgtaggctaatggcttttactgaggtatgttatttattatgtattttatgtcgatgtggtcaaaagctctacacatgaactcatggttactggtttagaatatcgacttttaataaaattttctgaacttctgaaggctaaaaggtaa
gi|4 : atagttaggaatgctacaatttaactcaattttaaaagtttaataaatacttgaaatgggaAATAATTGAATCGGTGCAATCCAGTGTGTGTCGGCTCCTGCgaaggctaaaaggtaa
gi|4 : AATCCAGTGTGTGTCGGCTCCTGCCATGAT-GATAG-GCAACAGCATTCCTTCT--TA------GC-TGT--ACTTTATAACATTTCGAAAT-TGT-AAAACTGTCGACAAA---ACACATG-ATTTAGTTTA-------CA-ATGTATTTT-GTAATATCCGACATGGT-GAAGG--GT-CAACTTAACTGTGATCAAAA-GTTAAATA-AA-TAATC-G-TGCCTAATACCTT--GCAC-AT-GGTGGT--ACGTAAAATGTATGT--TATG--T-----TA-GCG--TA------ATCT---TTAAT-ATTAT--TG-------TAT-GT-A-GT-------------TT-T-------T--TG----------TT--TTA---TTAT---C-ATTTG-TC-G-ACCAAA--AAGCT-CTA-C-A---GAGC-T-TT-T-GTTTACT-GCTTAT-A-T-----ATATTTTCCGAAC--TAT-AATA-A--AA-ATT-T----TCTGAA-catgatgataggcaacagcattccttcttagctgtactttataacatttcgaaattgtaaaactgtcgacaaaacacatgatttagtttacaatgtattttgtaatatccgacatggtgaagggtcaacttaactgtgatcaaaagttaaataaataatcgtgcctaataccttgcacatggtggtacgtaaaatgtatgttatgttagcgtaatctttaatattattgtatgtagttttttgttttattatcatttgtcgaccaaaaagctctacagagcttttgtttactgcttatatatattttccgaactataataaaaattttctgaaatctgga
gi|5 : aataattgaatcggtgcTTTAAAAGTTTTATAAATAATTAGAATGGGG-AATCCTGTGTGTGT-GGCTCCTGCAGATCTTAG-AAAACCTTCCTTatctgga
gi|5 : aaGAATCCTGTGTGTGTGG-CTCCTGC-A-GATCT-TAG-AAAAC--CTT-CCTTAT--TACATGTAGT-TGT--ACTACATA-CATT-CAAAAT-TGT-AAC-CTG---ACTAATACATA------TCA----TG-TTT--GCA-AT---TTTT-ATGATAT--GACATGGT-AAAGG--GT-CAACTTAACTGTGAT----A-TTT---TA-AA-TAGT--G-TGCCAAATAC-TT--GCAC-AT-GATT-T--A---GAAATGTATGT-ATCTGT-CTGTG-TACGTA--TA-TATAAATGTA-GTTAAT--TT-T--T--------TAG-TT-T-AT-------------TTATGTACCAGT-ATG----------TA--TTT---TTATGT-C-AT--G-TC-G-ATCAAA--A-GCT-CTA-C-A---GAGC-T-TA-T-G-CT-------------------------TCCG-AC--TAT-AAAT-A--AA-ATT-T----TCTGAA-attacatgtagttgtactacatacattcaaaattgtaacctgactaatacatatcatgtttgcaatttttatgatatgacatggtaaagggtcaacttaactgtgatattttaaatagtgtgccaaatacttgcacatgatttagaaatgtatgtatctgtctgtgtacgtatatataaatgtagttaattttttagtttatttatgtaccagtatgtatttttatgtcatgtcgatcaaaagctctacagagcttatgcttccgactataaataaaattttctgaatctgaa
gi|6 : aatttaaaagttttataaataattagaatgggATA-TTAGGAATACTACAAATTTAAATCAATTT-AAAAGTTTAATAAATAATTGGAATGGGG-AATCCT-TGTGTGT-GGCTCCTGCAGATA-TAG-AAAACCATCTTTCTtctgaa
gi|6 : aGAATCCT-TGTGTGTGG-CTCCTGC-A-GAT-A-TAG-AAAAC--CAT-CTTTCT--TA------GT-TGT--ACTGCAT--CATT-CAAAAT-TGT-AAA-CTG---ACTAATACATA------TTA----TG-TTT--GCA-AT---TTTT-ATGATAC--GACACGGT-GAAGG--GT-CAACTTAACTGTGAT----A-TTT---TA-AA-TAAT--G-TGCAAAATAC-TT--GCAC-AA-GATT-TA-A---AAAATGTATGT-GT--------TG-TG------TA-TGC--A--TA-GCTGATG----T--T--------TAT-GT-T-AT-------------TTA--------T-GTA----------TT--TTT---TTATGT-C-AT--G-TC-G-GTCAAA--A-GCT-CTA-C-A---GAGC-T-TA-T-G-TTACT-GTTT-TAA-A-----ATA---TCCG-AC--TTT-AAtagttgtactgcatcattcaaaattgtaaactgactaatacatattatgtttgcaatttttatgatacgacacggtgaagggtcaacttaactgtgatattttaaataatgtgcaaaatacttgcacaagatttaaaaaatgtatgtgttgtgtatgcatagctgatgtttatgttatttatgtatttttttatgtcatgtcggtcaaaagctctacagagcttatgttactgttttaaaatatccgactttaatgaat
gi|7 : aatattaggaatactacaaatttaaatcaatttaaaagtttaataaataattggaatgggAT-T-AAG-CAAAC--CAT-CCTTTT--CA------GTATG---ACTGCATA-CATT-CAAAAAATGT-AAA-ATG---ACAAA---ATACATA-A--AAGTATG-TTTCGGCA-AT---TTTT-ATGATAT--GACACGGT-GAAGGTTGT-ACACTT--TTG-GAT----A-TTT---TA-AATTATT--GTTGCCAAATAC-TTAAACACAAT-GATT-TTAA---AAAATGTATGT---------AATG-TT-GAA-------------TA-GCTAA--ATT-T--T--------TATCGTAT-AT-------------TTAT-------G-AAG----------TA--TTTTTCTTATGT-C-ATC-G-TC-GCGTCAAA--A-GCT-CTA-C-A---GAGC-TATA-T-G-Ttgaat
gi|8 : tcTT---TA-AA-TAAT--G-TACCAAATAC-TT--GCAG-AT-GATT-T--A---ACAATGTA---------------------------------ATGTA-GCTAATG--T-G--T--------TAT-GT-T-AT-------------TTATG------T-ATG----------TG--TCT---TTATGT-C-AT--G-TC-G-GTCAAA--A-GTT-CTA-C-A---GTGC-T-TA-T-G-TTACT-GTTA-T-ATACATGTATA---TCCG-AC--TAT-AAAT-A--CA-ATT-T----TCTGAATCTTatcctg
gi|9 : actcgaaattatatgaatctatgatatatacatctgtaactgttgtaaaatcattatttaaatgtgaatttttatttattgtttacaaAAAC--CAT-CTTTCT--CA------GT-TGT--ACTGCATA-CATT-CAAAAT-TGT-AAA-ATG---ACAAATACATATA------AAGTATG-TTT--GCA-AT---TTTTTATGATAT--GACACGGT-GAAGG--GT-TG---TAACTTTGAT----A-TTT---TA-AA-TTTT--G-TGCCAAATAC-TT--GCAC-AT-GATT-T--A---AAAATGTATGT----------ATG-TG------TA-GGC--TTTTA----AATA--T-T--T--------TAT-GT-T-AT-------------TTAT-------GAATG----------TATTTTT---TTATGT-C-AT--G-TC-G-GTCAAA--A-GCT-CTACC-A---GAGC-T-TA-T-G-TTCCT-taaaaaaagtcaat