lowQualScore : 1111111111 11111111111111
lowQualScore : 444444444444444444444444444444 11 2 1 1 77777777 444444 222 1111111111 11 111 2 1 2222222222222222 2 1 111111 3333333333 444444 111 111111 333333333 333333333333333333 444444 1 44444 2 99999999999999999999 1 1 11111111111111 2222 3333333 1 1 11 2222222 11 55555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 111111 888888888888888888888888888888 22 1 1
lowQualScore : 999999999999999999999999999999 3 33 2 6 0 9 0 00000000 444444 444 3 2222222222 66 777 88 2 7 2 0 7777777777777777 0 0 0 77 99 99 222222 2 5555555555 5 22 000000 888 6 99 999999 4 999 8 111111111 6 555555555555555555 6 000000 6 6 5 66 4 11111 2 0 99999999999999999999 5 3 6 5 6 77777777777777 1111 5 1111111 6 1 11 8 1111111 44 5 22 5 99999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 777777 444 44 1 666666 2 444 777 2 5 5 333333333333333333333333333333 3 33 0 2 6 7 6
lowQualScore : .............................. . .. . . . . . ........ ...... ... . .......... .. ... .. . . . . ................ . . . .. .. .. ...... . .......... . .. ...... ... . .. ...... . ... . ......... . .................. . ...... . . . .. . ..... . . .................... . . . . . .............. .... . ....... . . .. . ....... .. . .. . ............................................................................................ ...... ... .. . ...... . ... ... . . . .............................. . .. . . . . .
lowQualScore : 555555555555555555555555555555 2 88 8 0 0 0 0 22222222 555555 222 2 2222222222 00 555 00 5 8 5 0 0000000000000000 0 7 0 55 22 22 777777 5 0000000000 2 88 000000 000 7 44 999999 3 444 0 444444444 5 333333333333333333 7 000000 0 0 0 00 0 55555 5 0 00000000000000000000 0 0 0 0 0 00000000000000 2222 0 5555555 0 6 00 4 3333333 00 7 00 7 22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 333333 888 22 9 000000 3 777 888 9 0 7 222222222222222222222222222222 5 88 0 5 0 0 0
consensus : NNNNNTATATGAATGNNNTCAATACAANNNCTGGCG----AAGTTA--ACATCGTGTCAAAC-GTAATCAT-AATC-CA-----AAAAACA----ATATACAAAATCGAGTGTAGG----------GCAAC-ACGGA---CCTCCGACAAAAGCGAAGGTAGGATCAGG-TGC-CATGGAGGAG-AAGCATCCT-CTGAACTAAGAGTT-GGGCAAACACGGA--C--CC-TCGG-ACACA--AAAG----AGGTGGGATCAGGTNCTCNTGGAGGA-GTAAA-CATCCTCTGCTGA---CCGGTCACACCCGCC-GTGAGCC-CT-TA--TCGGTCGAAAA--AA--AAG--TA---A-ACGGGATTACCCGT-----AGTCAAATCTAGTAGGNNAATGACAGTCCNACACCNATGNGTATGTAAACAAATCCGGTCAACCNTNTGANCTTAGCGATANTTTGTAATNNNNNNNNNNNTTACTAGATTTGACTACGGGTAAT---CCCGGTTTAC----TTGATCA---N-GACTACAGG--GCTCACGGCGGGTGTGACCG--NTCAGCAGNGGATG-CTTAC-TCCTCC-TGAGNACCTGATCCCACCT----CTTT--TG-TGT-CCA---A-GG--G--TCCGTGTT-------TGCCC-AGCTC--TT-A--TTC-GCATTCTTT-GT--AGGA--AT-CATGA-A----ATTGATCACTGTT-CGT---TATCTTCACCT-TT-T--CCTAT---ATTATTNTNA------T---GTNTATC--AATAT-TGNTGAAAGAGGTA
Reference ( gi|3 ) : ATTAATATATAAATGTATTTGATATAAATT--AGCG----AAATTA--ACAATGTATTAAAC-GTAATAAT-AATCATA-----AAAAACA---AACATACAAGGTCGAGTGTAGGACAAGCC---GCAAT-ACGGA---CCTCCGACAAAAGCGAAGACAGGATCAGGTTGC-CATGGA-GAGTAAGCATCCT-CTGAAT-AAGAGCT-GGGTAACCACGGA--C--CC-TTGG-ACACA--AAAG----AGGTGGGATCAGGTGGTTA-GGAGGA-ATAAA-CATCCTCTGCTGA---CCGGTCACACCCGCC-GTGAGCC-CT-TA--TTAGTCGAAAA--AA--AAG--TA---A-ACGGGATTACCCGT-----CGTCAAATCCAGCACGAAAATGACAGTCTAACA--AA-GGGTATG-AAACAAA-----TCAA-CATATGA---TAGTGCTAATTTGTAATAGCAAACAAGATTATTATATTCGAAAAC---TAATTTTCTTAGTTTAC----TTAATTA---A-GA-TATAGG--GCTCACGGAGGGTGTGATCG--GTCAACAGTGGATG-TTTAC-TCCTCC-TAACCACCTGATCCCACCT----CTTT--TG-TGT-CCA---A-GG--G--TCCGTGTT-------TACCC-AGCTC--TT-A--TTCAACATTCTTT-GT--AGGA--AT-CATAA-A----ATTGATCACTGTT-CGT---TATCTTCACTT-TT-T--CCTAT---ATTGTTGTCA------T---GTTTATC--AATAT-TGCTGGATGAAGTAACATTTCTTTAATGGAAAAA
gi|1 : TATAT---TGAATTTAAT-TAACTTCTAACACTTAAAATTATAACATCGTGTTAAAC-GTAATAAT-AGTC-CACTCCCCAAAACA---TATATACAA-GTATAGTGTAGG----------GTAAC-ACAGA---CATCCAACAAAAGCGAAGGCAGGGTCAGG-TGC-CATGGAGGAGAAAGCATCCT-TTG
gi|4 : gtgatcaaccatgggaattggaggtcaaatgtggaattcctcaaaaatgagatttttggtttgaaattacactcattatgccttctcagaaattaaaacaattgcgttcttatttctcctctttatggatatttgacgacatttatatggtacccttcatTATGAATATTATCAATACAAAAA--GGCG----AAGTTA--ACATTGTGTCAAAC-GTAATCAT-AATCC-------AAAAACA-----TATACAAAATCGAGTGTAGG----------GCAAC-ACGGA---CCTTCGACAAAAGCGAAGGTAGGATCctgacgggtgatatccgccgtgagcccttagtcaagataaagtaaacgggattacccgtactcaaatctagtaggacaatgacagtctaacacagggtatgaaacaaatcagtcaacttttgacttagcgataattcaaagttggaaactatttcagtatagcgactgtagaaattgcaaaatgataattgttataaccctggaacatcaacgttttcttagcagttgatctcgctttaaaaaaccctcatacacatagcatgctcttacattttgactcaactgggagatatacacatcataagcaggtgatagttattggtaccgtatatgatttatattgtatattactacaaagaaaggaaaagttgacggttgcaaagttaaggtcatcacgcttaccatataatgtagttgtcagtctgccattagagtcaatattaagaaaaaatccaaatattatgcagatatgtcagagtatgtggtgtcctttacttcgagttcgtcaggatatatcaagtagacataattatcaaacattttgatcgttaactgataggacattgtctgtatatctatatgtaaagttgaaggacacggacagttttttgtttttatcctgtaacagtttttgaacacaatctgcttcgtttgaatatagaaataagtctgccaatacacaataaatatccatattaatactaacggggtgttggaaattatgatctccaaagactacatctctctaatctgaataaaactaggttttaatttatcgtgagtatttattgtatgtaaaggcaaatgcaacgaagaataatcaatcttgcaagtcccatgtagaatacgaaaacaagagttggacaaacacagaccactggtcacactagaggtggtataaacactgacccctggacacaccagatgtgggaccagtgt
gi|2 : ttttcgattgaaataaaataaatgtgattattaggtattttctgcctattaaaatgttgttgatgtttgaaatgataacatttgtttttGCG----AGGT-A--ACCTCGTGTTAAAC-GTAATCATCAATC-CA-----AAAAACATATAACACACA---TCGAG--------AAGCTTGGGCAACAACGGAAACCCTCCGACAAAGCCGAAGGTA-GATCAGG-TGCGCATGGAGGAG--AACATCTTGCTGAAcatatcttgttaagaaataa
gi|13 : cgcATTA--ACA-TGTGTCAAACCGTAATCAT-AATC-CA-----AAAAACA-----TATACAAAATCGAGTGTAGGG---------GCAAC-ACGGA---CCTCCAACAAAAGCGAGGaacgtcacactcggtgagcccgctagtcgacataattaagtaatccgggattacccgtagtcaaatctagtaagcaaatgacagtcctacaccaatgcgtatgtaaacaaatccagtcaaccatatgaacttagtgatactttgtaatcccccccccgccaaaaaaaacaagggtatcataggcgacaccgtagaaacattgcgaaatgcatggactttaacggagattccgtttaactatcaacctcgcaactctcaacactttttgttaagtcagcttgcgcctcgctttaaacatcccgcatacgccaatagcatctctttgcgtatcgaatccaacctgcgagataatacacatccataagcagctcgtgatcagtggtatatctaaacatagaaagggaaagttgacgatttgcaagttaaagctcatcacgccttattcatatagtgtaagtctgtcagtctgccattcagaggtcaattgttaagtaacatatcccaaatatgaagcagaatctgtcagtctgtggtgtccctt
gi|20 : tcaaaaaagcCAAAAGCGAAGGTAGGATCAGG-TGC-CA
gi|1 : tagggtgcacatacacgtagCAAGTC-C-CATGTA-GAATACGAA--------AAC-AAGAGTT-GGACAAACACAGA--C--CA-CTGG-TCACA--CTAG----AGGTGGTAT
gi|16 : gtgatcaaccatgggaattggaggtcaaatgtggaattcctcaaaaatgagatttttggtttgaaattacactcattatgccttctcagaaattaaaacaattgcgttcttatttctcctctttatggatatttgacgacatttatatggtacccttcattatattgaatttaattaacttctaacacttaaaattataacatcgtgttaaacgtaataatagtccactccccaaaacatatatacaagtatagtgtagggtaacacagacatccaacaaaagcgaaggcagggtcaggtgccatggaggagaaagcatcctttgctgacgggtgatatccgccgtgagcccttagtcaagataaagtaaacgggattacccgtactcaaatctagtaggacaatgacagtctaacacagggtatgaaacaaatcagtcaacttttgacttagcgataattcaaagttggaaactatttcagtatagcgactgtagaaattgcaaaatgataattgttataaccctggaacatcaacgttttcttagcagttgatctcgctttaaaaaaccctcatacacatagcatgctcttacattttgactcaactgggagatatacacatcataagcaggtgatagttattggtaccgtatatgatttatattgtatattactacaaagaaaggaaaagttgacggttgcaaagttaaggtcatcacgcttaccatataatgtagttgtcagtctgccattagagtcaatattaagaaaaaatccaaatattatgcagatatgtcagagtatgtggtgtcctttacttcgagttcgtcaggatatatcaagtagacataattatcaaacattttgatcgttaactgataggacattgtctgtatatctatatgtaaagttgaaggacacggacagttttttgtttttatcctgtaacagtttttgaacacaatctgcttcgtttgaatatagaaataagtctgccaatacacaataaatatccatattaatactaacggggtgttggaaattatgatctccaaagactacatctctctaatctgaataaaactaggttttaatttatcgtgagtatttattgtatgtaaaggcaaatgcaacgaagaataatcaatcttgTGAATTAAGAGTT-CGGCAAACACGTT--C--CT-TCGGTACACA--AA------AGGTGGAATCAaaacactgacccctggacacaccagatgtgggaccagtgt
gi|2 : AGCTTGGGCAACAACGGAAAC--CC-TCCG-ACA-----AAGCCGAAGGTAG-ATCAGGTGCGCATGGAGGA-G--AA-CATCTT--GCTGAAAAC--GTCACACTCG---GTGAGCC-C---G--CTAGTCGACAT--AATTAAG--TA---ATCCGGGATTACCCGT-----AGTCAAATCTAGTAAGCAAATGACAGTCCTACACCAATGCGTATGTAAACAAATCCAGTCAACCATATGAACTTAGTGATACTTTGTAATttcattggattatgataacaattaacact
gi|1 : cgcgcgaggtaacctcgtgttaaacgtaatcatcaatccaaaaaacatataacacacatcgaga-GGGTAAC-ACAGA--CATCC------A-ACA--AAAGCGA-AGGCAGGGTCAGGTG-CCATGGAGGA-GAAAG-CATCCTTTGCTGA---CGGGTGATATCCGCC-GTGAGCC-CT-TA-----GTC-AAGA--TA--AAG--TA---A-ACGGGATTACCCGT-----ACTCAAATCTAGTAGGACAATGACAGTCTAACA--CA-GGGTATG-AAACAAATCAG-TCAA-CTTTTGACT-TAGCGATAATTcccccccccgccaaaaaaaacaagggtatcataggcgacaccgtagaaacattgcgaaatgcatggactttaacggagattccgtttaactatcaacctcgcaactctcaacactttttgttaagtcagcttgcgcctcgctttaaacatcccgcatacgccaatagcatctctttgcgtatcgaatccaacctgcgagataatacacatccataagcagctcgtgatcagtggtatatctaaacatagaaagggaaagttgacgatttgcaagttaaagctcatcacgccttattcatatagtgtaagtctgtcagtctgccattcagaggtcaattgttaagtaacatatcccaaatatgaagcagaatctgtcagtctgtggtgtccctt
gi|8 : gtgatcaaccatgggaattggaggtcaaatgtggaattcctcaaaaatgagatttttggtttgaaattacactcattatgccttctcagaaattaaaacaattgcgttcttatttctcctctttatggatatttgacgacatttatatggtacccttcattatattgaatttaattaacttctaacacttaaaattataacatcgtgttaaacgtaataatagtccactccccaaaacatatatacaagtatagtgtaGGTAAACATGGA--C--CCACTGG-ACACATCAAA-------ATGCGATCA--CTGTCT-GGAGGAGGTAAAGCATCC-CTGCTGA---TCTG-CACA--CGTC-ATGGGCCGCC-TA--Tcaaagttggaaactatttcagtatagcgactgtagaaattgcaaaatgataattgttataaccctggaacatcaacgttttcttagcagttgatctcgctttaaaaaaccctcatacacatagcatgctcttacattttgactcaactgggagatatacacatcataagcaggtgatagttattggtaccgtatatgatttatattgtatattactacaaagaaaggaaaagttgacggttgcaaagttaaggtcatcacgcttaccatataatgtagttgtcagtctgccattagagtcaatattaagaaaaaatccaaatattatgcagatatgtcagagtatgtggtgtcctttacttcgagttcgtcaggatatatcaagtagacataattatcaaacattttgatcgttaactgataggacattgtctgtatatctatatgtaaagttgaaggacacggacagttttttgtttttatcctgtaacagtttttgaacacaatctgcttcgtttgaatatagaaataagtctgccaatacacaataaatatccatattaatactaacggggtgttggaaattatgatctccaaagactacatctctctaatctgaataaaactaggttttaatttatcgtgagtatttattgtatgtaaaggcaaatgcaacgaagaataatcaatcttgcaagtcccatgtagaatacgaaaacaagagttggacaaacacagaccactggtcacactagaggtggtataaacactgacccctggacacaccagatgtgggaccagtgt
gi|9 : tttatttgataaaagatCAAGGA--C--TC-TTAG-AAACA--ACAG----AAATTGGATCAGATTCTTC-GGAGAA-AAAGG-CATCAATTGTTGA---CAAATAACACCttgatttaaatttgcattcttcaatgaaaattatggaatt
gi|23 : -GGGGGA-GTAAA-CATCCTCCACTGA---TCGGTCACACACGttcctaaatattcgctcgtatgttctctgtatcagtcatgagaaaggcgactgt
gi|15 : A-GTGAA-CACCCACTGTCAA---TCTATCACACCCGCT-GCTATCC-CTGTATCTTGGTCAA
gi|7 : ttaattgacaaaaTCCTTTGCAGAA--CCGGT-GCACCCGCCAGTGAGCC-CT-TA---CGGTCGGAAACCAA--ACGTTTATATA-AC-GTATTACCCGTACTCACGTCAAATCtgtctatcactac
gi|2 : gggaacacggtatctccaccaaaatgcgaagtcggcagtctggatattcaagtgcccctaatggaacggagtggagTTACTAGATTTGACTACGGGTAAT---CCCGGATTAC----TTAATTATGTC-GACTAGCGG--GCTCACCGA--GTGTGA-CGTTTTCAGCA--AGATG-TT--C-TCCTCCATGCGCACCTGAT-CTACCTTCGGCTT------TGT-CGG---A-GG--GTTTCCGTTGT-------TGCCCAAGCTt
gi|15 : cgcgcgaggtaacctcgtgttaaacgtaatcatcaatccaaaaaacatataacacacatcgagaTTAATTGACAAAATTGACCA---A-GA-TACAGG--GATAGCAGCGGGTGTGATAG--ATTGACAGTGGGTG-TTCAC-Tgcaaatgacagtcctacaccaatgcgtatgtaaacaaatccagtcaaccatatgaacttagtgatactttgtaatcccccccccgccaaaaaaaacaagggtatcataggcgacaccgtagaaacattgcgaaatgcatggactttaacggagattccgtttaactatcaacctcgcaactctcaacactttttgttaagtcagcttgcgcctcgctttaaacatcccgcatacgccaatagcatctctttgcgtatcgaatccaacctgcgagataatacacatccataagcagctcgtgatcagtggtatatctaaacatagaaagggaaagttgacgatttgcaagttaaagctcatcacgccttattcatatagtgtaagtctgtcagtctgccattcagaggtcaattgttaagtaacatatcccaaatatgaagcagaatctgtcagtctgtggtgtccctt
gi|1 : GTTTAC----TTTATCT---T-GACTA-AGG--GCTCACGGCGGATATCACCC--GTCAGCAAAGGATG-CTTTC-TCCTCCATGG-CACCTGACCCTGCCTTCG-CTTT--TG-T-T---------GGATG--TCTGTG-T-------TACCC-tgtctatcactac
gi|8 : gtgatcaaccatgggaattggaggtcaaatgtggaattcctcaaaaatgagatttttggtttgaaattacactcattatgccttctcagaaattaaaacaattgcgttcttatttctcctctttatggatatttgacgacatttatatggtacccttcattatattgaatttaattaacttctaacacttaaaattataacatcgtgttaaacgtaataatagtccactccccaaaacatatatacaagtatagtgtaTTTAT----TTGATAA---AAGA-TATAGGCGGCCCATGACGTGTGCA---G--ATCAGCAG-GGATGCTTTACCTCCTCC-AGACAG--TGATCGCAT-------TTTGATG-TGT-CCA---GTGG--G--TCCATGTT-------TACCT-TGATT--TA-A--ATTTGCATTCTTCAAT--GAAA--AT-TATGG-A----ATTgggattacccgtactcaaatctagtaggacaatgacagtctaacacagggtatgaaacaaatcagtcaacttttgacttagcgataattcaaagttggaaactatttcagtatagcgactgtagaaattgcaaaatgataattgttataaccctggaacatcaacgttttcttagcagttgatctcgctttaaaaaaccctcatacacatagcatgctcttacattttgactcaactgggagatatacacatcataagcaggtgatagttattggtaccgtatatgatttatattgtatattactacaaagaaaggaaaagttgacggttgcaaagttaaggtcatcacgcttaccatataatgtagttgtcagtctgccattagagtcaatattaagaaaaaatccaaatattatgcagatatgtcagagtatgtggtgtcctttacttcgagttcgtcaggatatatcaagtagacataattatcaaacattttgatcgttaactgataggacattgtctgtatatctatatgtaaagttgaaggacacggacagttttttgtttttatcctgtaacagtttttgaacacaatctgcttcgtttgaatatagaaataagtctgccaatacacaataaatatccatattaatactaacggggtgttggaaattatgatctccaaagactacatctctctaatctgaataaaactaggttttaatttatcgtgagtatttattgtatgtaaaggcaaatgcaacgaagaataatcaatcttgcaagtcccatgtagaatacgaaaacaagagttggacaaacacagaccactggtcacactagaggtggtataaacactgacccctggacacaccagatgtgggaccagtgt
gi|5 : -GA-AACAGG--GTTCAAGGGGGGGGGGGGCT--TTCAATAGGGCATG-CTTAC-TCCTC--TAAATA--TG----CA----------------TGT-TCATATA-TG--G--T---TGTT-------TGTTC-TTCTC--TT-AATTTTGA-ATTCTT--GC--AGGA--TG-TATGG-C----ATTGA-CATTGCT-------TATGTTCACTT-GT-T--C-------ATTAATATGA------T---GTTTATC--AATTT-T
gi|9 : attGGTGTTATTT--GTCAACAATTGATG-CCTTT-TTCTCC-GAAGAATCTGATCCAATTT----CTGT--TG-TTT-CTA---A-GA--G--TCCTTGTTCCTAAA-TATTC--GCTC--GT-A--T-----GTTCTCT-GT--ATCA--GT-CATGA-G----A
gi|23 : GTGTGACCG--ATCAGTGGAGGATG-TTTAC-TCCCCC-aaggcgactgt
gi|6 : CCGATTCC--CT----CTTC--TGGTAT-ACT---A-GG--A--TTCGTGTTGCTCTCTTACAC-AACTAAATT-T--TT--GCATTCCTG-AT--AGGA--GT-TATAT-A----ACTGACCACTGGT-CAT---TATCTTCACCC-TTGTAACCTATCAAATTCTTTTAATTCCTTT---GTTTACCTAAACATCTGATGAAAGAGGTAacg
gi|16 : TGATTCCACCT------TT--TG-TGTACCG---A-AG--G--AACGTGTT-------TGCCG-AACTC--TTAA--TT---CATTCATT------GGATTAT-GATAACA----ATTAA-CACT
gi|1 : ATACCACCT----CTAG--TG-TGA-CCA---G-TG--G--TCTGTGTT-------TGTCC-AACTC--TT-GTTTTC-GTATTCTAC-AT--GGGA--CT-TGCAA-G----ATTGATTATTCTT-CGT---TGCATTTGCCT-TT-
gi|14 : gtgatcaaccatgggaattggaggtcaaatgtggaattcctcaaaaatgagatttttggtttgaaattacactcattatgccttctcagaaattaaaacaattgcgttcttatttctcctctttatggatatttgacgacatttatatggtacccttcattatattgaatttaattaacttctaacacttaaaattataacatcgtgttaaacgtaataatagtccactccccaaaacatatatacaagtatagtgtagggtaacacagacatccaacaaaagcgaaggcagggtcaggtgccatggaggagaaagcatcctttgctgacgggtgatatccgccgtgagcccttagtcaagataaagtaaacgggattacccgtactcaaatctagtaggacaatgacagtctaacacagggtatgaaacaaatcagtcaacttttgacttagcgataattcaaagttggaaactatttcagtatagcgactgtagaaattgcaaaatgataattgttataaccctggaacatcaacgttttcttagcagttgatctcgctttaaaaaaccctcatacacatagcatgctcttacattttgactcaactgggagatatacacatcataagcaggtgatagttattggtaccgtatatgatttatattgtatattactacaaagaaaggaaaagttgacggttgcaaagttaaggtcatcacgcttaccatataatgtagttgtcagtctgccattagagtcaatattaagaaaaaatccaaatattatgcagatatgtcagagtatgtggtgtcctttacttcgagttcgtcaggatatatcaagtagacataattatcaaacattttgatcgttaactgataggacattgtctgtatatctatatgtaaagttgaaggacacggacagttttttgtttttatcctgtaacagtttttgaacacaatctgcttcgtttgaatatagaaataagtctgccaatacacaataaatatccatattaatactaacggggtgttggaaattatgatctccaaagactacatctctctaatctgaataaaactaggttttaatttatcgtgagtatttattgtatgtG-TAT-CCA---A-CA--C--TCCATTTT-------CTCCC-ATCTC--TT-AA-TTCG-TATTACTT-GT--AGGA--AT-GATGG-T----ATTGATAATAATT-CTT---TATCTTCACaaacactgacccctggacacaccagatgtgggaccagtgt
gi|11 : CCGTGTT-------TACCT-A------TT-G--CTCA----CCTTT-GT--AGGA--GT-CATTA-ATCAGATTGATCACTATTACCTGCCTATCTTCACCT-TT-T--TC-AT---A-------CA------T---GTACATCA-AATAT-c
gi|18 : ccaggacaACTCTTT-AA--AGGA--GT-TTTAA-AG---ATTGATCACTGTT-TGT---TATCTTCACTTGTT-T--CC
gi|21 : tTTCTTT-AT--AGGA--AG-CATGA-A----ATTGATAACTGTT-CGT---TAT-TTCATTT-attta
gi|19 : TT-GTTCAGGA--AT-CATGATG----ATTGATCACTGTT-GGT---TATCTTCCCCT-TT-T--CC
gi|17 : ta--AGGA--ATTCGTGA-A----ATTGATCACTGTT-CGT---TATTTCCACTT-GT-TA-ACTGT---GTCATTGCCA------TAAGATGTGTG--AATAC-TGCa
4 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|10 ): TGGATAGCGTTATCAGTAAAAAGGCGCAAAGGTTAACTATGTGTACAAAGCGTAACATCAATGAAATCCATAAAAGAATGCATTACGAAAATCAGGTGTAGGGCAACCACGGGAACATTTTCG
Unaligned ( gi|12 ): TTTCGCTCGAAATTCAAAAAAACAAATCAACCCTTGACTATAAGTATCTTGTGTATTTGTGCTGTTGCAAGTCGGACAAATTTGGTTTCTTCATCTCGGACATC
Unaligned ( gi|22 ): AGAATACAGAAAACAAGGGTTGGACAAACACGGACACTGG
Unaligned ( gi|24 ): TTGTGATCAATACAAAAAGGCGAAATTAACATTGT
Alignments
lowQualScore : 1111111111111
lowQualScore : 1 333333 1111 1 222222 11111 1111 111 2222222 111 1 1 1 1 11 1 11 111 3333 2222222 11 222 1 1 444 111111 11 11111 22222 33333 2 2222 2 2 11111111111 1 2222222222222 111 3 11 11111 2222 111111111 11 55555555555555 111111111 333333333333333333333333333333 11
lowQualScore : 2 333 22 777777 4444 5 77 5 1 6 6 6 555555 6 66666 9999 111 6 6 6 6 99 6 1111111 6 6 444 0 0 3 6 3 99 1 0 11 222 2 3 8888 6 1 5555555 11 6 6 222 5 5 2 0 0 000 2 666666 33 88888 2 55555 3 22 11 99999 1 3 9999 3 1 1 7 0 1 11111111111 6 5 6 6666666666666 888 3 1 1 33 0 0 2 22222 2 8 8 8 888 1111 0 666666666 4 4 888888 33 4 00 00000000000000 55 55 44444 3 777777777 1 4 777 1 5 5 777777777777777777777777777777 1 99 8 1 4
lowQualScore : . ... .. ...... .... . .. . . . . . ...... . ..... .... ... . . . . .. . ....... . . ... . . . . . .. . . .. ... . . .... . . ....... .. . . ... . . . . . ... . ...... .. ..... . ..... . .. .. ..... . . .... . . . . . . ........... . . . ............. ... . . . .. . . . ..... . . . . ... .... . ......... . . ...... .. . .. .............. .. .. ..... . ......... . . ... . . . .............................. . .. . . .
lowQualScore : 0 000 22 666666 2222 7 99 7 1 7 7 7 888888 7 77777 8888 777 7 7 7 7 22 7 7777777 7 7 000 0 0 3 7 3 33 2 4 00 888 5 2 8888 5 0 2222222 00 0 4 000 0 0 5 0 0 888 5 000000 88 55555 5 00000 7 00 77 00000 0 7 7777 3 0 0 0 7 0 00000000000 0 0 0 0000000000000 000 7 0 7 88 2 2 5 66666 8 8 0 0 000 2222 2 444444444 4 4 333333 77 0 99 44444444444444 33 00 88888 1 555555555 3 0 000 6 0 0 444444444444444444444444444444 0 00 0 0 0
consensus : NNNNNTATATGAATGTNATCAATACAAANACTGGCG----AAG-TTA--AC-ATCGTGT-CAAA-C-GTAATCAT------AATC-CAA-----AAAACA-A-TA---T-AC-A-AA-ATCGAGTG--TA-GG-------GCAA-C-ACGGA---CCTCCGACAAAAGCGAAGGTAGGATCAGGT-GC-CATGGAGGAG-AAGCATCCT-CTGAACTAAGAGTTGGGCAANCACGGA--CCCTCGG-ACACAAAAGC-G-AGGTGGGATCAGGTGCNCAT---GGA--GGAGTAAACATCCTCCGCTGAA--CCGGTCACACCCGCC-GTGAGCCC-TTA-CGGTCGAAAA--AA--AAG--TA---A-ACGGGATTACCCGTA-----GTCAAATCTAGTANGAAAATGACAGTCTAACAC--A-GGGTATG-AAACAAAT-CAGTCAA-CATATGA-CTTAGCGATAATTTGTAATAGCAAACAAGATTATTATATTCGAAAAC---TAATTTTCTTAGTTTACTTGATNAAGA-TACAGG--GCTCACGGNGGGTGTGATCGGTCAACAGTGGATGCTT-AC-TCCTCCNAANNACCTGATCCCACCTCTTT--TG-TGT-CCA---A-GGGTCCGTGTTTGC-CCANCTCTT-A------------TTC-GCA--TTCTTT-GT--AGGAAT-CATGA----A----ATTGATCACTGTT-CGT---TATCTTCACCT-TT-T--CCTAT---ATTATTGTCA------T---GTTTATC--AATAT-TGNTGGANGAGGTA
Reference ( family-800 ) : NNNNNTATATGAATGNNNTCAATACAANNNCTGGCG----AAG-TTA--AC-ATCGTGT-CAAA-C-GTAATCAT------AATC-CAA-----AAAACA-A-TA---T-AC-A-AA-ATCGAGTG--TA-GG-------GCAA-C-ACGGA---CCTCCGACAAAAGCGAAGGTAGGATCAGGT-GC-CATGGAGGAG-AAGCATCCT-CTGAACTAAGAGTTGGGCAAACACGGA--CCCTCGG-ACACAAAAG----AGGTGGGATCAGGTNCTCNT---GGA--GGAGTAAACATCCTCTGCTGA---CCGGTCACACCCGCC-GTGAGCCC-TTATCGGTCGAAAA--AA--AAG--TA---A-ACGGGATTACCCGTA-----GTCAAATCTAGTAGGNNAATGACAGTCCNACACCNATGNGTATGTAAACAAATCCGGTCAACCNTNTGANCTTAGCGATANTTTGTAATNNNNNNNNNNNTTACTAGATTTGACTACGGGTAA---TCCCGGTTTACTTGATCANGACTACAGG--GCTCACGGCGGGTGTGACCGNTCAGCAGNGGATGCTT-AC-TCCTCCTGAGNACCTGATCCCACCTCTTT--TG-TGT-CCA---A-GGGTCCGTGTTTGC-CCAGCTCTT-A------------TTC-GCA--TTCTTT-GT--AGGAAT-CATGA----A----ATTGATCACTGTT-CGT---TATCTTCACCT-TT-T--CCTAT---ATTATTNTNA------T---GTNTATC--AATAT-TGNTGAAAGAGGTA
gi|1 : TATAT---TGAATTTAAT-TAACTTCTAACACTTAAAA-TTATAAC-ATCGTGT-TAAA-C-GTAATAAT------AGTC-CACTCCCCAAAACATA-TA---T-AC-A-AGTAT--AGTG--TA-GG-------GTAA-C-ACAGA---CATCCAACAAAAGCGAAGGCAGGGTCAGGT-GC-CATGGAGGAGAAAGCATCCT-TTG
gi|1 : gtgatcaaccatgggaattggaggtcaaatgtggaattcctcaaaaatgagatttttggtttgaaattacactcattatgccttctcagaaattaaaacaattgcgttcttatttctcctctttatggatatttgacgacatttatatggtacccttcatAGTGTAGGGTAA-CACAGA--CATCCA----ACAAAAGCGA-AGGCAGGGTCAGGTGC-CAT---GGA--GGAGAAAGCATCCTTTGCTGA---CGGGTGATATCCGCC-GTGAGCCC-TTA---GTC-AAGA--TA--AAG--TA---A-ACGGGATTACCCGTA-----CTCAAATCTAGTAGGACAATGACAGTCTAACAC--A-GGGTATG-AAACAAAT-CAGTCAA-CTTTTGA-CTTAGCGATAATTctgacgggtgatatccgccgtgagcccttagtcaagataaagtaaacgggattacccgtactcaaatctagtaggacaatgacagtctaacacagggtatgaaacaaatcagtcaacttttgacttagcgataattcaaagttggaaactatttcagtatagcgactgtagaaattgcaaaatgataattgttataaccctggaacatcaacgttttcttagcagttgatctcgctttaaaaaaccctcatacacatagcatgctcttacattttgactcaactgggagatatacacatcataagcaggtgatagttattggtaccgtatatgatttatattgtatattactacaaagaaaggaaaagttgacggttgcaaagttaaggtcatcacgcttaccatataatgtagttgtcagtctgccattagagtcaatattaagaaaaaatccaaatattatgcagatatgtcagagtatgtggtgtcctttacttcgagttcgtcaggatatatcaagtagacataattatcaaacattttgatcgttaactgataggacattgtctgtatatctatatgtaaagttgaaggacacggacagttttttgtttttatcctgtaacagtttttgaacacaatctgcttcgtttgaatatagaaataagtctgccaatacacaataaatatccatattaatactaacggggtgttggaaattatgatctccaaagactacatctctctaatctgaataaaactaggttttaatttatcgtgagtatttattgtatgtaaaggcaaatgcaacgaagaataatcaatcttgcaagtcccatgtagaatacgaaaacaagagttggacaaacacagaccactggtcacactagaggtggtataaacactgacccctggacacaccagatgtgggaccagtgt
gi|1 : gtgatcaaccatgggaattggaggtcaaatgtggaattcctcaaaaatgagatttttggtttgaaattacactcattatgccttctcagaaattaaaacaattgcgttcttatttctcctctttatggatatttgacgacatttatatggtacccttcattatattgaatttaattaacttctaacacttaaaattataacatcgtgttaaacgtaataatagtccactccccaaaacatatatacaagtatATACCACCTCTAG--TG-TGA-CCA---G-TGGTCTGTGTTTGT-CCAACTCTT-GTT----------TTC-GTA--TTCTAC-AT--GGGACT-TGCAA----G----ATTGATTATTCTT-CGT---TGCATTTGCCT-TT-caaagttggaaactatttcagtatagcgactgtagaaattgcaaaatgataattgttataaccctggaacatcaacgttttcttagcagttgatctcgctttaaaaaaccctcatacacatagcatgctcttacattttgactcaactgggagatatacacatcataagcaggtgatagttattggtaccgtatatgatttatattgtatattactacaaagaaaggaaaagttgacggttgcaaagttaaggtcatcacgcttaccatataatgtagttgtcagtctgccattagagtcaatattaagaaaaaatccaaatattatgcagatatgtcagagtatgtggtgtcctttacttcgagttcgtcaggatatatcaagtagacataattatcaaacattttgatcgttaactgataggacattgtctgtatatctatatgtaaagttgaaggacacggacagttttttgtttttatcctgtaacagtttttgaacacaatctgcttcgtttgaatatagaaataagtctgccaatacacaataaatatccatattaatactaacggggtgttggaaattatgatctccaaagactacatctctctaatctgaataaaactaggttttaatttatcgtgagtatttattgtatgtaaaggcaaatgcaacgaagaataatcaatcttgcaagtcccatgtagaatacgaaaacaagagttggacaaacacagaccactggtcacactagaggtggtataaacactgacccctggacacaccagatgtgggaccagtgt
gi|1 : gtgatcaaccatgggaattggaggtcaaatgtggaattcctcaaaaatgagatttttggtttgaaattacactcattatgccttctcagaaattaaaacaattgcgttcttatttctcctctttatggatatttgacgacatttatatggtacccttcattatattgaatttaattaacttctaacacttaaaattataacatcgtgttaaacgtaataatagtccactccccaaaacatatatacaagtatagtgtagggtaacacagacatccaacaaaagcgaaggcagggtcaggtgccatggaggagaaagcatcctttgctgacgggtgatatccgccgtgagcccttagtcaagataaagtaaacgggattacccgtactcaaatctagtaggacaatgacagtctaacacagggtatgaaacaaatcagtcaacttttgacttagcgataattcaaagttggaaactatttcagtatagcgactgtagaaattgcaaaatgataattgttataaccctggaacatcaacgttttcttagcagttgatctcgctttaaaaaaccctcatacacatagcatgctcttacattttgactcaactgggagatatacacatcataagcaggtgatagttattggtaccgtatatgatttatattgtatattactacaaagaaaggaaaagttgacggttgcaaagttaaggtcatcacgcttaccatataatgtagttgtcagtctgccattagagtcaatattaagaaaaaatccaaatattatgcagatatgtcagagtatgtggtgtcctttacttcgagttcgtcaggatatatcaagtagacataattatcaaacattttgatcgttaactgataggacattgtctgtatatctatatgtaaagttgaaggacacggacagttttttgtttttatcctgtaacagtttttgaacacaatctgcttcgtttgaatatagaaataagtctgccaatacacaataaatatccatattaatactaacggggtgttggaaattatgatctccaaagactacatctctctaatctgaataaaactaggttttaatttatcgtgagtatttattgtatgtCTGGTCCCACATCTGG--TG-TGT-CCA---G-GGGTCAGTGTTTATACCACCTCTaaacactgacccctggacacaccagatgtgggaccagtgt
gi|10 : gtgatcaaccatgggaattggaggtcaaatgtggaattcctcaaaaatgagatttttggtttgaaattacactcattatgccttctcagaaattaaaacaattgcgttcttatttctcctctttatggatatttgacgacatttatatggtacccttcattatattgaatttaattaacttctaacacttaaaattataacatcgtgttaaacgtaataatagtccactccccaaaacatatatacaagtatagtgtagggtaacacagacatccaacaaaagcgaaggcagggtcaggtgccatggaggagaaagcatcctttgctgacgggtgatatccgccgtgagcccttagtcaagataaagtaaacgggattacccgtactcaaatctagtaggacaatgacagtctaacacagggtatgaaacaaatcagtcaacttttgacttagcgataattcaaagttggaaactatttcagtatagcgactgtagaaattgcaaaatgataattgttataaccctggaacatcaacgttttcttagcagttgatctcgctttaaaaaaccctcatacacatagcatgctcttacattttgactcaactgggagatatacacatcataagcaggtgatagttattggtaccgtatatgatttatattgtatattactacaaagaaaggaaaagttgacggttgcaaagttaaggtcatcacgcttaccatataatgtagttgtcagtctgccattagagtcaatattaagaaaaaatccaaatattatgcagatatgtcagagtatgtggtgtcctttacttcgagttcgtcaggatatatcaagtagacataattatcaaacattttgatcgttaactgataggacattgtctgtatatctatatgtaaagttgaaggacacggacagttttttgtttttatcctgtaacagtttttgaacacaatctgcttcgtttgaatatagaaataagtctgccaatacacaataaatatccatattaatactaacggggtgttggaaattatgatctccaaagactacatctctctaatctgaataaaactaggttttaatttatcgtgagtatttattgtatgtaaaggcaaatgcaacgaagaataatcaatcttgcaagtcccatgtagaatacgaaaacaagagttggacaaacacagaccactggtcacactGTTATCAGTAAAAAGGC--GCA----AAGGTTA--ACTAT-GTGTACAAAGC-GTAA-CATCAATGAAATC-CAT-----AAAAGA-A-TGCATT-ACGA-AA-ATCAGGTG--TA-GG-------GCAACC-ACGGtgt
gi|11 : tggatagcCCGTGTTTAC-CTA----TT-G------------CTC-AC-----CTTT-GT--AGGAGT-CATTA----ATCAGATTGATCACTATTACCTGCCTATCTTCACCT-TT-T--TC-AT---A-------CA------T---GTACATCA-AATAT-gaacattttcg
gi|13 : ccaggaca-TTA--AC-AT-GTGT-CAAA-CCGTAATCAT------AATC-CAA-----AAAAC--A-TA---T-AC-A-AA-ATCGAGTG--TAGGG-------GCAA-C-ACGGA---CCTCCAACAAAAGCGAGG
gi|14 : tcaaaaaagcaG-TAT-CCA---A-CACTCCATTTTCTC-CCATCTCTT-AA-----------TTC-GTA--TTACTT-GT--AGGAAT-GATGG----T----ATTGATAATAATT-CTT---TATCTTCACC
gi|15 : TTGACCAAGA-TACAGG--GATAGCAGCGGGTGTGATAGATTGACAGTGGGTGTTC-AC-T
gi|16 : ttaattgacaaaaTGAATTAAGAGTTCGGCAAACACGTT--CCTTCGGTACACAAA------AGGTGGAATCAtgtctatcactac
gi|16 : TGATTCCACCT--TT--TG-TGTACCG---A-AGGAACGTGTTTGC-CGAACTCTTAA------------TT---CA--TTCATT-------GGAT-TATGATAACA----ATTAA-CACTttcattggattatgataacaattaacact
gi|17 : --AGGAATTCGTGA----A----ATTGATCACTGTT-CGT---TATTTCCACTT-GT-TA-ACTGT---GTCATTGCCA------TAAGATGTGTG--AATAC-TG
gi|18 : A--CTCTTT-AA--AGGAGT-TTTAA----AG---ATTGATCACTGTT-TGT---TATCTTCACTTGTT-T--CCc
gi|19 : tTT-GTTCAGGAAT-CATGAT---G----ATTGATCACTGTT-GGT---TATCTTCCCCT-TT-T--CCattta
gi|2 : taGCG----AGG-T-A--AC-CTCGTGT-TAAA-C-GTAATCATC-----AATC-CAA-----AAAAC--A-TA---TAAC-ACAC-ATCGAGAAGCTT-GG-------GCAA-CAACGGAAACCCTCCGACAAAGCCGAAGGTA-GATCAGGT-GCGCATGGAGGAG-AA-CATCTTGCTGAAa
gi|2 : cgcTTGGGCAACAACGGAAACCCTCCG-ACA---AAGCCGAAGGTAG-ATCAGGTGCGCAT---GGA--GGAG--AACATCTT--GCTGAAAAC--GTCACACTCG---GTGAGCCCGCTA---GTCGACAT--AATTAAG--TA---ATCCGGGATTACCCGTA-----GTCAAATCTAGTAAGCAAATGACAGTCCTACACCAATGCGTATGTAAACAAATCCAGTCAACCATATGAACTTAGTGATACTTTGTAATaacgtcacactcggtgagcccgctagtcgacataattaagtaatccgggattacccgtagtcaaatctagtaagcaaatgacagtcctacaccaatgcgtatgtaaacaaatccagtcaaccatatgaacttagtgatactttgtaatcccccccccgccaaaaaaaacaagggtatcataggcgacaccgtagaaacattgcgaaatgcatggactttaacggagattccgtttaactatcaacctcgcaactctcaacactttttgttaagtcagcttgcgcctcgctttaaacatcccgcatacgccaatagcatctctttgcgtatcgaatccaacctgcgagataatacacatccataagcagctcgtgatcagtggtatatctaaacatagaaagggaaagttgacgatttgcaagttaaagctcatcacgccttattcatatagtgtaagtctgtcagtctgccattcagaggtcaattgttaagtaacatatcccaaatatgaagcagaatctgtcagtctgtggtgtccctt
gi|20 : cgcgcgaggtaacctcgtgttaaacgtaatcatcaatccaaaaaacatataacacacatcgagaagcCAAAAGCGAAGGTAGGATCAGGT-GC-CAcccccccccgccaaaaaaaacaagggtatcataggcgacaccgtagaaacattgcgaaatgcatggactttaacggagattccgtttaactatcaacctcgcaactctcaacactttttgttaagtcagcttgcgcctcgctttaaacatcccgcatacgccaatagcatctctttgcgtatcgaatccaacctgcgagataatacacatccataagcagctcgtgatcagtggtatatctaaacatagaaagggaaagttgacgatttgcaagttaaagctcatcacgccttattcatatagtgtaagtctgtcagtctgccattcagaggtcaattgttaagtaacatatcccaaatatgaagcagaatctgtcagtctgtggtgtccctt
gi|21 : tagggtgcacatacacgtag--TTCTTT-AT--AGGAAG-CATGA----A----ATTGATAACTGTT-CGT---TAT-TTCA
gi|22 : AAC-AAGGGTTGGACAAACACGGA--CACTttt
gi|23 : agaatacagaa---GGG--GGAGTAAACATCCTCCACTGA---TCGGTCACACACGgg
gi|24 : TGTGATCAATACAAAAA--GGCG----AAA-TTA--AC-ATTGT
gi|3 : tTATATAAATGTATTTGATATAAAT--TAGCG----AAA-TTA--AC-AATGTAT-TAAA-C-GTAATAAT------AATCATAA-----AAAACA-AACA---T-AC-A-AG-GTCGAGTG--TA-GGACAAGCCGCAA-T-ACGGA---CCTCCGACAAAAGCGAAGACAGGATCAGGTTGC-CATGGAGAGT-AAGCATCCT-CTGAA-TAAGAGCTGGGTAACCACGGA--CCCTTGG-ACACAAAAG----AGGTGGGATCAGGTGGTTA----GGA--GGAATAAACATCCTCTGCTGA---CCGGTCACACCCGCC-GTGAGCCC-TTATTAGTCGAAAA--AA--AAG--TA---A-ACGGGATTACCCGTC-----GTCAAATCCAGCACGAAAATGACAGTCTAACA---AAGGGTATG-AAACAAA-----TCAA-CATATGA---TAGTGCTAATTTGTAATAGCAAACAAGATTATTATATTCGAAAAC---TAATTTTCTTAGTTTACTTAATTAAGA-TATAGG--GCTCACGGAGGGTGTGATCGGTCAACAGTGGATGTTT-AC-TCCTCCTAACCACCTGATCCCACCTCTTT--TG-TGT-CCA---A-GGGTCCGTGTTTAC-CCAGCTCTT-A------------TTCAACA--TTCTTT-GT--AGGAAT-CATAA----A----ATTGATCACTGTT-CGT---TATCTTCACTT-TT-T--CCTAT---ATTGTTGTCA------T---GTTTATC--AATAT-TGCTGGATGAAGTA
gi|4 : attaaTATGAATATTATCAATACAAAAA--GGCG----AAG-TTA--AC-ATTGTGT-CAAA-C-GTAATCAT------AATC-CAA-----AAA-CA---TA---T-AC-A-AA-ATCGAGTG--TA-GG-------GCAA-C-ACGGA---CCTTCGACAAAAGCGAAGGTAGGATCacatttctttaatggaaaaa
gi|5 : ttttcgattgaaataaaataaatgtgattattaggtattttctgcctattaaaatgttgttgatgtttgaaatgataacatttgtttttACAGG--GTTCAAGGGGGGGGGGGGCTTTCAATAGGGCATGCTT-AC-TCCTC-TAAATA--TG----CA------------TGT-TCATATA-TGGT---TGTTTGT-TCTTCTCTT-AAT----------TTT-GAA--TTCTT--GC--AGGATG-TATGG----C----ATTGA-CATTGCT-------TATGTTCACTT-GT-T--C-------ATTAATATGA------T---GTTTATC--AATTT-Tcatatcttgttaagaaataa
gi|6 : attgaaCCGATTCC--CTCTTC--TGGTAT-ACT---A-GGATTCGTGTT-GC-TC---TCTT-ACACAACTAAATTTTT-GCA--TTCCTG-AT--AGGAGT-TATAT----A----ACTGACCACTGGT-CAT---TATCTTCACCC-TTGTAACCTATCAAATTCTTTTAATTCCTTT---GTTTACCTAAACATCTGATGAAAGAGGTA
gi|7 : TCAAGTGCCCCTAATGGAACGGAGTGGA-GTCCTTTGCAGAA--CCGGT-GCACCCGCCAGTGAGCCC-TTA-CGGTCGGAAACCAA--ACGTTTATATA-AC-GTATTACCCGTACTCACGTCAAATCT
gi|8 : gggaacacggtatctccaccaaaatgcgaagtcggcagtctggatatTTTATTTGATAAAAGATATAGGCGGCCCATGACG--TGTG-CAGATCAGCAG-GGATGCTTTACCTCCTCCAGACAG--TGATCGCAT---TTTGATG-TGT-CCA---GTGGGTCCATGTTTAC-CTTGAT-TT-AAA----------TTT-GCA--TTCTTCAAT--GAAAAT-TATGG----A----ATT
gi|9 : GGTGTTATTTGTCAACAATTGATGCCT-TT-TTCTCCGAAGAATCTGATCCAATTTCTGT--TG-TTT-CTA---A-GAGTCCTTGTT--C-CTAAATATTCG------------CTC-GTATGTTCTCT-GT--ATCAGT-CATGA----G----A
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): TTTCGCTCGAAATTCAAAAAAACAAATCAACCCTTGACTATAAGTATCTTGTGTATTTGTGCTGTTGCAAGTCGGACAAATTTGGTTTCTTCATCTCGGACATC
Alignments
lowQualScore : 1 33333 1 222222 11111 1111 111 2222222 111 1 1 1 1 2 111 2222 2222222 333333333 111 22222 11 11 11 1 1 333 111111 11 11111 22222 22222 1 1 1 1 2222 1 11 2222 111111111 44444444444444 11111 111111111 33333333333333333333333333 22 1
lowQualScore : 3 1 8 88888 5 77 5 1 6 6 6 555555 6 66666 9999 111 6 6 6 6 99 6 1111111 6 6 444 0 0 3 6 3 3 8 222 1111 8 3333333 8 000000000 3 444 22222 3 11 6 11 11 5 2 0 0 555 2 666666 33 88888 2 55555 1 11111 3 3 6 3 3 6 0 8888 1 0 33 0 0 1 99999 5 8 8 1 1111 0 666666666 4 4 777 4 11 3 4 66666666666666 22222 44 44444 3 777777777 1 4 777 1 5 5 00000000000000000000000000 33 0 1 1
lowQualScore : . . . ..... . .. . . . . . ...... . ..... .... ... . . . . .. . ....... . . ... . . . . . . . ... .... . ....... . ......... . ... ..... . .. . .. .. . . . . ... . ...... .. ..... . ..... . ..... . . . . . . . .... . . .. . . . ..... . . . . .... . ......... . . ... . .. . . .............. ..... .. ..... . ......... . . ... . . . .......................... .. . . .
lowQualScore : 3 0 0 44444 7 99 7 1 7 7 7 888888 7 77777 8888 777 7 7 7 7 22 7 7777777 7 7 000 0 0 3 7 3 0 8 444 8888 0 0000000 0 444444444 2 000 22222 2 00 0 00 44 0 5 0 0 555 5 000000 88 55555 5 00000 0 00000 3 3 7 3 3 7 7 3333 0 0 88 2 2 0 00000 6 0 0 0 8888 2 444444444 4 4 000 0 66 6 5 00000000000000 44444 66 88888 1 555555555 3 0 000 6 0 0 88888888888888888888888888 88 0 0 0
consensus : NNNNNTATAT-GAATGTNATCAA-TACAAANACTGGCGAAG-TTA--AC-ATCGTGT-CAAA-C-GTAATCAT------AATC-CAA-----AAAACA-A-TA---T-AC-A-AA-ATCGAGTG--TA-GG-------GCAA-C-ACGGA---CCTCCGACAAAAGCGAAGGTAGGATCAGGT-GC-CATGGAGGAG-AAGCATCCT-CTGAATTAAGAGTTGGGCAANCACGGA--CCCTCGG-ACAC-AAAA-GC--GA-GGT-----G---GGAT---CAGGTGCNC---ATGGA--GGAGTAAACATCCTCCGCTGAACCGGTCACACCCGCC-GTGAGCCC-TTAC-GGTCGAAAA--AA--AAG--TA---A-ACGGGATTACCCGTA-----GTCAAATCTAGTANGAAAATGACAGTCTAACA-CA--GGGTATG-AAACAAAT-CAGTCAA-CATATG-ACTTAGCGATAATTTGTAATAGCAAACAAGATTATTATATTCGAAAACTAATTTTCTTAGTTTAC----TTGATNAA-GATACAGG--GCTCACGGNGGGTGCGATCGGTCAACAGTGGATGCTT-AC-TCCTCCGAACAACCTGATCCCACCTCTTT--TG-TGT-CCA---A-GGGTCCGTGTTTGC-CCANCTCTT-A------------TT---C-GCA--TTCTTT-GT--AGGAAT-CATGA----A----ATTGATCACTGTT-CGT---TATCTTCACCT-TT-T--CCTAT---ATTATTGTCA------TGTTTATC--AATAT-TGNTGGANGAGGTA
Reference ( family-800 ) : NNNNNTATAT-GAATGTNATCAA-TACAAANACTGGCGAAG-TTA--AC-ATCGTGT-CAAA-C-GTAATCAT------AATC-CAA-----AAAACA-A-TA---T-AC-A-AA-ATCGAGTG--TA-GG-------GCAA-C-ACGGA---CCTCCGACAAAAGCGAAGGTAGGATCAGGT-GC-CATGGAGGAG-AAGCATCCT-CTGAACTAAGAGTTGGGCAANCACGGA--CCCTCGG-ACAC-AAAA-GC--GA-GGT-----G---GGAT---CAGGTGCNC---ATGGA--GGAGTAAACATCCTCCGCTGAACCGGTCACACCCGCC-GTGAGCCC-TTAC-GGTCGAAAA--AA--AAG--TA---A-ACGGGATTACCCGTA-----GTCAAATCTAGTANGAAAATGACAGTCTAACA-CA--GGGTATG-AAACAAAT-CAGTCAA-CATATG-ACTTAGCGATAATTTGTAATAGCAAACAAGATTATTATATTCGAAAACTAATTTTCTTAGTTTAC----TTGATNAA-GATACAGG--GCTCACGGNGGGTGTGATCGGTCAACAGTGGATGCTT-AC-TCCTCCNAANNACCTGATCCCACCTCTTT--TG-TGT-CCA---A-GGGTCCGTGTTTGC-CCANCTCTT-A------------TT---C-GCA--TTCTTT-GT--AGGAAT-CATGA----A----ATTGATCACTGTT-CGT---TATCTTCACCT-TT-T--CCTAT---ATTATTGTCA------TGTTTATC--AATAT-TGNTGGANGAGGTA
gi|1 : TATATTGAATTTAATTAACTTCTAACACT--TAAAA-TTATAAC-ATCGTGT-TAAA-C-GTAATAAT------AGTC-CACTCCCCAAAACATA-TA---T-AC-A-AGTAT--AGTG--TA-GG-------GTAA-C-ACAGA---CATCCAACAAAAGCGAAGGCAGGGTCAGGT-GC-CATGGAGGAGAAAGCATCCT-TTG
gi|1 : gtgatcaaccatgggaattggaggtcaaatgtggaattcctcaaaaatgagatttttggtttgaaattacactcattatgccttctcagaaattaaaacaattgcgttcttatttctcctctttatggatatttgacgacatttatatggtacccttcatAGTGTAGGGTAA-CACAGA--CATCCA----AC-AAAA-GC--GAAGGC-----A---GGGT---CAGGTGC-C---ATGGA--GGAGAAAGCATCCTTTGCTGA-CGGGTGATATCCGCC-GTGAGCCC-TTA---GTC-AAGA--TA--AAG--TA---A-ACGGGATTACCCGTA-----CTCAAATCTAGTAGGACAATGACAGTCTAACA-CA--GGGTATG-AAACAAAT-CAGTCAA-CTTTTG-ACTTAGCGATAATTctgacgggtgatatccgccgtgagcccttagtcaagataaagtaaacgggattacccgtactcaaatctagtaggacaatgacagtctaacacagggtatgaaacaaatcagtcaacttttgacttagcgataattcaaagttggaaactatttcagtatagcgactgtagaaattgcaaaatgataattgttataaccctggaacatcaacgttttcttagcagttgatctcgctttaaaaaaccctcatacacatagcatgctcttacattttgactcaactgggagatatacacatcataagcaggtgatagttattggtaccgtatatgatttatattgtatattactacaaagaaaggaaaagttgacggttgcaaagttaaggtcatcacgcttaccatataatgtagttgtcagtctgccattagagtcaatattaagaaaaaatccaaatattatgcagatatgtcagagtatgtggtgtcctttacttcgagttcgtcaggatatatcaagtagacataattatcaaacattttgatcgttaactgataggacattgtctgtatatctatatgtaaagttgaaggacacggacagttttttgtttttatcctgtaacagtttttgaacacaatctgcttcgtttgaatatagaaataagtctgccaatacacaataaatatccatattaatactaacggggtgttggaaattatgatctccaaagactacatctctctaatctgaataaaactaggttttaatttatcgtgagtatttattgtatgtaaaggcaaatgcaacgaagaataatcaatcttgcaagtcccatgtagaatacgaaaacaagagttggacaaacacagaccactggtcacactagaggtggtataaacactgacccctggacacaccagatgtgggaccagtgt
gi|1 : gtgatcaaccatgggaattggaggtcaaatgtggaattcctcaaaaatgagatttttggtttgaaattacactcattatgccttctcagaaattaaaacaattgcgttcttatttctcctctttatggatatttgacgacatttatatggtacccttcattatattgaatttaattaacttctaacacttaaaattataacatcgtgttaaacgtaataatagtccactccccaaaacatatatacaagtatATACCACCTCTAG--TG-TGA-CCA---G-TGGTCTGTGTTTGT-CCAACTCTT-GTT----------TT---C-GTA--TTCTAC-AT--GGGACT-TGCAA----G----ATTGATTATTCTT-CGT---TGCATTTGCCT-TT-caaagttggaaactatttcagtatagcgactgtagaaattgcaaaatgataattgttataaccctggaacatcaacgttttcttagcagttgatctcgctttaaaaaaccctcatacacatagcatgctcttacattttgactcaactgggagatatacacatcataagcaggtgatagttattggtaccgtatatgatttatattgtatattactacaaagaaaggaaaagttgacggttgcaaagttaaggtcatcacgcttaccatataatgtagttgtcagtctgccattagagtcaatattaagaaaaaatccaaatattatgcagatatgtcagagtatgtggtgtcctttacttcgagttcgtcaggatatatcaagtagacataattatcaaacattttgatcgttaactgataggacattgtctgtatatctatatgtaaagttgaaggacacggacagttttttgtttttatcctgtaacagtttttgaacacaatctgcttcgtttgaatatagaaataagtctgccaatacacaataaatatccatattaatactaacggggtgttggaaattatgatctccaaagactacatctctctaatctgaataaaactaggttttaatttatcgtgagtatttattgtatgtaaaggcaaatgcaacgaagaataatcaatcttgcaagtcccatgtagaatacgaaaacaagagttggacaaacacagaccactggtcacactagaggtggtataaacactgacccctggacacaccagatgtgggaccagtgt
gi|1 : gtgatcaaccatgggaattggaggtcaaatgtggaattcctcaaaaatgagatttttggtttgaaattacactcattatgccttctcagaaattaaaacaattgcgttcttatttctcctctttatggatatttgacgacatttatatggtacccttcattatattgaatttaattaacttctaacacttaaaattataacatcgtgttaaacgtaataatagtccactccccaaaacatatatacaagtatagtgtagggtaacacagacatccaacaaaagcgaaggcagggtcaggtgccatggaggagaaagcatcctttgctgacgggtgatatccgccgtgagcccttagtcaagataaagtaaacgggattacccgtactcaaatctagtaggacaatgacagtctaacacagggtatgaaacaaatcagtcaacttttgacttagcgataattcaaagttggaaactatttcagtatagcgactgtagaaattgcaaaatgataattgttataaccctggaacatcaacgttttcttagcagttgatctcgctttaaaaaaccctcatacacatagcatgctcttacattttgactcaactgggagatatacacatcataagcaggtgatagttattggtaccgtatatgatttatattgtatattactacaaagaaaggaaaagttgacggttgcaaagttaaggtcatcacgcttaccatataatgtagttgtcagtctgccattagagtcaatattaagaaaaaatccaaatattatgcagatatgtcagagtatgtggtgtcctttacttcgagttcgtcaggatatatcaagtagacataattatcaaacattttgatcgttaactgataggacattgtctgtatatctatatgtaaagttgaaggacacggacagttttttgtttttatcctgtaacagtttttgaacacaatctgcttcgtttgaatatagaaataagtctgccaatacacaataaatatccatattaatactaacggggtgttggaaattatgatctccaaagactacatctctctaatctgaataaaactaggttttaatttatcgtgagtatttattgtatgtCTGGTCCCACATCTGG--TG-TGT-CCA---G-GGGTCAGTGTTTATACCACCTCTaaacactgacccctggacacaccagatgtgggaccagtgt
gi|10 : gtgatcaaccatgggaattggaggtcaaatgtggaattcctcaaaaatgagatttttggtttgaaattacactcattatgccttctcagaaattaaaacaattgcgttcttatttctcctctttatggatatttgacgacatttatatggtacccttcattatattgaatttaattaacttctaacacttaaaattataacatcgtgttaaacgtaataatagtccactccccaaaacatatatacaagtatagtgtagggtaacacagacatccaacaaaagcgaaggcagggtcaggtgccatggaggagaaagcatcctttgctgacgggtgatatccgccgtgagcccttagtcaagataaagtaaacgggattacccgtactcaaatctagtaggacaatgacagtctaacacagggtatgaaacaaatcagtcaacttttgacttagcgataattcaaagttggaaactatttcagtatagcgactgtagaaattgcaaaatgataattgttataaccctggaacatcaacgttttcttagcagttgatctcgctttaaaaaaccctcatacacatagcatgctcttacattttgactcaactgggagatatacacatcataagcaggtgatagttattggtaccgtatatgatttatattgtatattactacaaagaaaggaaaagttgacggttgcaaagttaaggtcatcacgcttaccatataatgtagttgtcagtctgccattagagtcaatattaagaaaaaatccaaatattatgcagatatgtcagagtatgtggtgtcctttacttcgagttcgtcaggatatatcaagtagacataattatcaaacattttgatcgttaactgataggacattgtctgtatatctatatgtaaagttgaaggacacggacagttttttgtttttatcctgtaacagtttttgaacacaatctgcttcgtttgaatatagaaataagtctgccaatacacaataaatatccatattaatactaacggggtgttggaaattatgatctccaaagactacatctctctaatctgaataaaactaggttttaatttatcgtgagtatttattgtatgtaaaggcaaatgcaacgaagaataatcaatcttgcaagtcccatgtagaatacgaaaacaagagttggacaaacacagaccactggtcacactGTTATCAG-TAAAAAGGC--GCAAAGGTTA--ACTAT-GTGTACAAAGC-GTAA-CATCAATGAAATC-CAT-----AAAAGA-A-TGCATT-ACGA-AA-ATCAGGTG--TA-GG-------GCAACC-ACGGtgt
gi|11 : tggatagcCCGTGTTTAC-CTA----TT-G------------CT---C-AC-----CTTT-GT--AGGAGT-CATTA----ATCAGATTGATCACTATTACCTGCCTATCTTCACCT-TT-T--TC-AT---A-------CA------TGTACATCA-AATAT-gaacattttcg
gi|13 : ccaggaca-TTA--AC-AT-GTGT-CAAA-CCGTAATCAT------AATC-CAA-----AAAAC--A-TA---T-AC-A-AA-ATCGAGTG--TAGGG-------GCAA-C-ACGGA---CCTCCAACAAAAGCGAGG
gi|14 : tcaaaaaagcaG-TAT-CCA---A-CACTCCATTTTCTC-CCATCTCTT-AA-----------TT---C-GTA--TTACTT-GT--AGGAAT-GATGG----T----ATTGATAATAATT-CTT---TATCTTCACC
gi|15 : TTAATTGACAAAATTGACCAA-GATACAGG--GATAGCAGCGGGTGTGATAGATTGACAGTGGGTGTTC-AC-T
gi|16 : TGAATTAAGAGTTCGGCAAACACGTT--CCTTCGGTACAC-AAA-------A-GGT-----G---GAAT---CAtgtctatcactac
gi|16 : TGATTCCACCT--TT--TG-TGTACCG---A-AGGAACGTGTTTGC-CGAACTCTTAA------------TT------CA--TTCATT-------GGAT-TATGATAACA----ATTAA-CACTttcattggattatgataacaattaacact
gi|17 : --AGGAATTCGTGA----A----ATTGATCACTGTT-CGT---TATTTCCACTT-GT-TA-ACTGT---GTCATTGCCA------T
gi|18 : A--CTCTTT-AA--AGGAGT-TTTAA----AG---ATTGATCACTGTT-TGT---TATCTTCACTTGTT-T--CCaagatgtgtgaatactgc
gi|19 : tTT-GTTCAGGAAT-CATGAT---G----ATTGATCACTGTT-GGT---TATCTTCCCCT-TT-T--CCattta
gi|2 : taGCGAGG-T-A--AC-CTCGTGT-TAAA-C-GTAATCATC-----AATC-CAA-----AAAAC--A-TA---TAAC-ACAC-ATCGAGAAGCTT-GG-------GCAA-CAACGGAAACCCTCCGACAAAGCCGAAGGTA-GATCAGGT-GCGCATGGAGGAG-AA-CATCTTGCTGAAa
gi|2 : cgcTTGGGCAACAACGGAAACCCTCCG-ACA----AA-GCCGAA-GGT-----A---G-AT---CAGGTGCGC---ATGGA--GGAG--AACATCTT--GCTGAAAACGTCACACTCG---GTGAGCCCGCTA---GTCGACAT--AATTAAG--TA---ATCCGGGATTACCCGTA-----GTCAAATCTAGTAAGCAAATGACAGTCCTACACCAATGCGTATGTAAACAAATCCAGTCAACCATATGAACTTAGTGATACTTTGTAATaacgtcacactcggtgagcccgctagtcgacataattaagtaatccgggattacccgtagtcaaatctagtaagcaaatgacagtcctacaccaatgcgtatgtaaacaaatccagtcaaccatatgaacttagtgatactttgtaatcccccccccgccaaaaaaaacaagggtatcataggcgacaccgtagaaacattgcgaaatgcatggactttaacggagattccgtttaactatcaacctcgcaactctcaacactttttgttaagtcagcttgcgcctcgctttaaacatcccgcatacgccaatagcatctctttgcgtatcgaatccaacctgcgagataatacacatccataagcagctcgtgatcagtggtatatctaaacatagaaagggaaagttgacgatttgcaagttaaagctcatcacgccttattcatatagtgtaagtctgtcagtctgccattcagaggtcaattgttaagtaacatatcccaaatatgaagcagaatctgtcagtctgtggtgtccctt
gi|20 : cgcgcgaggtaacctcgtgttaaacgtaatcatcaatccaaaaaacatataacacacatcgagaagcCAAAAGCGAAGGTAGGATCAGGT-GC-CAcccccccccgccaaaaaaaacaagggtatcataggcgacaccgtagaaacattgcgaaatgcatggactttaacggagattccgtttaactatcaacctcgcaactctcaacactttttgttaagtcagcttgcgcctcgctttaaacatcccgcatacgccaatagcatctctttgcgtatcgaatccaacctgcgagataatacacatccataagcagctcgtgatcagtggtatatctaaacatagaaagggaaagttgacgatttgcaagttaaagctcatcacgccttattcatatagtgtaagtctgtcagtctgccattcagaggtcaattgttaagtaacatatcccaaatatgaagcagaatctgtcagtctgtggtgtccctt
gi|21 : tagggtgcacatacacgtag--TTCTTT-AT--AGGAAG-CATGA----A----ATTGATAACTGTT-CGT---TAT-TTCA
gi|22 : ---A-GTGTCCGTGTTTGT-CCAACCCTT-G------------TTTTCT-GTA--TTCTttt
gi|23 : GGG--GGAGTAAACATCCTCCACTG-ATCGGTCACACACGgg
gi|24 : TGTGATCAA-TACAAAAA--GGCGAAA-TTA--AC-ATTGT
gi|3 : tTATAT-AAATGTATTTGA-TATAAAT--TAGCGAAA-TTA--AC-AATGTAT-TAAA-C-GTAATAAT------AATCATAA-----AAAACA-AACA---T-AC-A-AG-GTCGAGTG--TA-GGACAAGCCGCAA-T-ACGGA---CCTCCGACAAAAGCGAAGACAGGATCAGGTTGC-CATGGAGAGT-AAGCATCCT-CTGAA-TAAGAGCTGGGTAACCACGGA--CCCTTGG-ACAC-AAAA-G----A-GGT-----G---GGAT---CAGGTGGTT---A-GGA--GGAATAAACATCCTCTGCTGA-CCGGTCACACCCGCC-GTGAGCCC-TTATTAGTCGAAAA--AA--AAG--TA---A-ACGGGATTACCCGTC-----GTCAAATCCAGCACGAAAATGACAGTCTAACA-AA--GGGTATG-AAACAAAT-CA----A-CATATG-A--TAGTGCTAATTTGTAATAGCAAACAAGATTATTATATTCGAAAACTAATTTTCTTAGTTTAC----TTAATTAA-GATATAGG--GCTCACGGAGGGTGTGATCGGTCAACAGTGGATGTTT-AC-TCCTCCTAACCACCTGATCCCACCTCTTT--TG-TGT-CCA---A-GGGTCCGTGTTTAC-CCAGCTCTT-A------------TT---CAACA--TTCTTT-GT--AGGAAT-CATAA----A----ATTGATCACTGTT-CGT---TATCTTCACTT-TT-T--CCTAT---ATTGTTGTCA------TGTTTATC--AATAT-TGCTGGATGAAGTA
gi|4 : attaaTAT-GAATATTATCAA-TACAAAAA--GGCGAAG-TTA--AC-ATTGTGT-CAAA-C-GTAATCAT------AATC-CAA-----AAA-CA---TA---T-AC-A-AA-ATCGAGTG--TA-GG-------GCAA-C-ACGGA---CCTTCGACAAAAGCGAAGGTAGGATCacatttctttaatggaaaaa
gi|5 : ttttcgattgaaataaaataaatgtgattattaggtattttctgcctattaaaatgttgttgatgtttgaaatgataacatttgttttt-GAAACAGG--GTTCAAGGGGGGGGGGGGCTTTCAATAGGGCATGCTT-AC-TCCTCTAAATA---TG----CA------------TGT-TCATATA-TGGT---TGTTTGT-TCTTCTCTT-AAT----------TT---T-GAA--TTCTT--GC--AGGATG-TATGG----C----ATTGA-CATTGCT-------TATGTTCACTT-GT-T--C-------ATTAATATGA------TGTTTATC--AATTT-Tcatatcttgttaagaaataa
gi|6 : attCCGATTCC--CTCTTC--TGGTAT-ACT---A-GGATTCGTGTT-GC----TCTCTT-ACACAACTAAATTTT---T-GCA--TTCCTG-AT--AGGAGT-TATAT----A----ACTGACCACTGGT-CAT---TATCTTCACCC-TTGTAACCTATCAAATTCTTTTAATTCCTTTGTTTACCTAAACATCTGATGAAAGAGGTA
gi|7 : AACACGGT--ATCTC----CACCAAAATGC--GA-AGTCGGCAGTCTGGATATTCAAGTGCCCCTAATGGAACGGAGTGGA-GTCCTTTGCAGAACCGGT-GCACCCGCCAGTGAGCCC-TTAC-GGTCGGAAACCAA--ACGTTTATATA-AC-GTATTACCCGTACTCACGTCAAATCT
gi|8 : gggTTTAT----TTGATAAAAGATATAGGCGGCCCATGACGTGTGCA---GATCAGCAG-GGATGCTTTACCTCCTCCAGACAG--TGATCGCAT---TTTGATG-TGT-CCA---GTGGGTCCATGTTTAC-CTTGAT-TT-AAA----------TT---T-GCA--TTCTTCAAT--GAAAAT-TATGG----A----ATT
gi|9 : GGTGTTATTTGTCAACAATTGATGCCT-TT-TTCTCCGAAGAATCTGATCCAATTTCTGT--TG-TTT-CTA---A-GAGTCCTTGTT--C-CTAAATATTCG------------CT---C-GTATGTTCTCT-GT--ATCAGT-CATGA----G----A
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): TTTCGCTCGAAATTCAAAAAAACAAATCAACCCTTGACTATAAGTATCTTGTGTATTTGTGCTGTTGCAAGTCGGACAAATTTGGTTTCTTCATCTCGGACATC
Alignments
lowQualScore : 1 33333 1 222222 11111 1111 111 2222222 111 1 1 1 1 1 111 2222 2222222 333333333 111 22222 11 11 11 1 1 333 111111 11 11111 22222 22222 1 1 1 1 2222 1 11 1111111 11 111111111 44444444444444 11111 111111111 33333333333333333333333333 22 1
lowQualScore : 3 1 8 88888 5 77 5 1 6 6 6 555555 6 66666 9999 111 6 6 6 6 99 6 1111111 6 6 444 0 0 3 6 3 5 8 222 1111 8 3333333 8 000000000 3 444 22222 3 11 6 11 11 5 2 0 0 555 2 666666 33 88888 2 55555 1 11111 3 3 6 3 3 6 0 8888 1 0 33 0 0 1 1111111 5 8 8 4 0 99 0 666666666 4 4 777 4 11 3 4 66666666666666 22222 44 44444 3 777777777 1 4 777 1 5 5 00000000000000000000000000 33 0 1 1
lowQualScore : . . . ..... . .. . . . . . ...... . ..... .... ... . . . . .. . ....... . . ... . . . . . . . ... .... . ....... . ......... . ... ..... . .. . .. .. . . . . ... . ...... .. ..... . ..... . ..... . . . . . . . .... . . .. . . . ....... . . . . . .. . ......... . . ... . .. . . .............. ..... .. ..... . ......... . . ... . . . .......................... .. . . .
lowQualScore : 3 0 0 44444 7 99 7 1 7 7 7 888888 7 77777 8888 777 7 7 7 7 22 7 7777777 7 7 000 0 0 3 7 3 5 8 444 8888 0 0000000 0 444444444 2 000 22222 2 00 0 00 44 0 5 0 0 555 5 000000 88 55555 5 00000 0 00000 3 3 7 3 3 7 7 3333 0 0 88 2 2 0 8888888 6 0 0 2 2 88 2 444444444 4 4 000 0 66 6 5 00000000000000 44444 66 88888 1 555555555 3 0 000 6 0 0 88888888888888888888888888 88 0 0 0
consensus : NNNNNTATAT-GAATGTNATCAA-TACAAANACTGGCGAAG-TTA--AC-ATCGTGT-CAAA-C-GTAATCAT------AATC-CAA-----AAAACA-A-TA---T-AC-A-AA-ATCGAGTG--TA-GG-------GCAA-C-ACGGA---CCTCCGACAAAAGCGAAGGTAGGATCAGGT-GC-CATGGAGGAG-AAGCATCCT-CTGAATTAAGAGTTGGGCAANCACGGA--CCCTCGG-ACAC-AAAA-GC--GA-GGT-----G---GGAT---CAGGTGCNC---ATGGA--GGAGTAAACATCCTCCGCTGAACCGGTCACACCCGCC-GTGAGCCC-TTAC-GGTCGAAAA--AA--AAG--TA---A-ACGGGATTACCCGTA-----GTCAAATCTAGTANGAAAATGACAGTCTAACA-CA--GGGTATG-AAACAAAT-CAGTCAA-CATATG-ACTTAGCGATAATTTGTAATAGCAAACAAGATTATTATATTCGAAAACTAATTTTCTTAGTTTAC----TTGATNAA-GATACAGG--GCTCACGGNGGGTGCGATCGGTCAACAGTGGATGCTT-AC-TCCTCCGAACAACCTGATCCCACCTCTTT--TG-TGT-CCA---A-GGGTCCGTGTTTGC-CCANCTCTT-A------------TT---C-GCA--TTCTTT-GT--AGGAAT-CATGA----A----ATTGATCACTGTT-CGT---TATCTTCACCT-TT-T--CCTAT---ATTATTGTCA------TGTTTATC--AATAT-TGNTGGANGAGGTA
Reference ( family-800 ) : NNNNNTATAT-GAATGTNATCAA-TACAAANACTGGCGAAG-TTA--AC-ATCGTGT-CAAA-C-GTAATCAT------AATC-CAA-----AAAACA-A-TA---T-AC-A-AA-ATCGAGTG--TA-GG-------GCAA-C-ACGGA---CCTCCGACAAAAGCGAAGGTAGGATCAGGT-GC-CATGGAGGAG-AAGCATCCT-CTGAATTAAGAGTTGGGCAANCACGGA--CCCTCGG-ACAC-AAAA-GC--GA-GGT-----G---GGAT---CAGGTGCNC---ATGGA--GGAGTAAACATCCTCCGCTGAACCGGTCACACCCGCC-GTGAGCCC-TTAC-GGTCGAAAA--AA--AAG--TA---A-ACGGGATTACCCGTA-----GTCAAATCTAGTANGAAAATGACAGTCTAACA-CA--GGGTATG-AAACAAAT-CAGTCAA-CATATG-ACTTAGCGATAATTTGTAATAGCAAACAAGATTATTATATTCGAAAACTAATTTTCTTAGTTTAC----TTGATNAA-GATACAGG--GCTCACGGNGGGTGCGATCGGTCAACAGTGGATGCTT-AC-TCCTCCGAACAACCTGATCCCACCTCTTT--TG-TGT-CCA---A-GGGTCCGTGTTTGC-CCANCTCTT-A------------TT---C-GCA--TTCTTT-GT--AGGAAT-CATGA----A----ATTGATCACTGTT-CGT---TATCTTCACCT-TT-T--CCTAT---ATTATTGTCA------TGTTTATC--AATAT-TGNTGGANGAGGTA
gi|1 : TATATTGAATTTAATTAACTTCTAACACT--TAAAA-TTATAAC-ATCGTGT-TAAA-C-GTAATAAT------AGTC-CACTCCCCAAAACATA-TA---T-AC-A-AGTAT--AGTG--TA-GG-------GTAA-C-ACAGA---CATCCAACAAAAGCGAAGGCAGGGTCAGGT-GC-CATGGAGGAGAAAGCATCCT-TTG
gi|1 : gtgatcaaccatgggaattggaggtcaaatgtggaattcctcaaaaatgagatttttggtttgaaattacactcattatgccttctcagaaattaaaacaattgcgttcttatttctcctctttatggatatttgacgacatttatatggtacccttcatAGTGTAGGGTAA-CACAGA--CATCCA----AC-AAAA-GC--GAAGGC-----A---GGGT---CAGGTGC-C---ATGGA--GGAGAAAGCATCCTTTGCTGA-CGGGTGATATCCGCC-GTGAGCCC-TTA---GTC-AAGA--TA--AAG--TA---A-ACGGGATTACCCGTA-----CTCAAATCTAGTAGGACAATGACAGTCTAACA-CA--GGGTATG-AAACAAAT-CAGTCAA-CTTTTG-ACTTAGCGATAATTctgacgggtgatatccgccgtgagcccttagtcaagataaagtaaacgggattacccgtactcaaatctagtaggacaatgacagtctaacacagggtatgaaacaaatcagtcaacttttgacttagcgataattcaaagttggaaactatttcagtatagcgactgtagaaattgcaaaatgataattgttataaccctggaacatcaacgttttcttagcagttgatctcgctttaaaaaaccctcatacacatagcatgctcttacattttgactcaactgggagatatacacatcataagcaggtgatagttattggtaccgtatatgatttatattgtatattactacaaagaaaggaaaagttgacggttgcaaagttaaggtcatcacgcttaccatataatgtagttgtcagtctgccattagagtcaatattaagaaaaaatccaaatattatgcagatatgtcagagtatgtggtgtcctttacttcgagttcgtcaggatatatcaagtagacataattatcaaacattttgatcgttaactgataggacattgtctgtatatctatatgtaaagttgaaggacacggacagttttttgtttttatcctgtaacagtttttgaacacaatctgcttcgtttgaatatagaaataagtctgccaatacacaataaatatccatattaatactaacggggtgttggaaattatgatctccaaagactacatctctctaatctgaataaaactaggttttaatttatcgtgagtatttattgtatgtaaaggcaaatgcaacgaagaataatcaatcttgcaagtcccatgtagaatacgaaaacaagagttggacaaacacagaccactggtcacactagaggtggtataaacactgacccctggacacaccagatgtgggaccagtgt
gi|1 : gtgatcaaccatgggaattggaggtcaaatgtggaattcctcaaaaatgagatttttggtttgaaattacactcattatgccttctcagaaattaaaacaattgcgttcttatttctcctctttatggatatttgacgacatttatatggtacccttcattatattgaatttaattaacttctaacacttaaaattataacatcgtgttaaacgtaataatagtccactccccaaaacatatatacaagtatATACCACCTCTAG--TG-TGA-CCA---G-TGGTCTGTGTTTGT-CCAACTCTT-GTT----------TT---C-GTA--TTCTAC-AT--GGGACT-TGCAA----G----ATTGATTATTCTT-CGT---TGCATTTGCCT-TT-caaagttggaaactatttcagtatagcgactgtagaaattgcaaaatgataattgttataaccctggaacatcaacgttttcttagcagttgatctcgctttaaaaaaccctcatacacatagcatgctcttacattttgactcaactgggagatatacacatcataagcaggtgatagttattggtaccgtatatgatttatattgtatattactacaaagaaaggaaaagttgacggttgcaaagttaaggtcatcacgcttaccatataatgtagttgtcagtctgccattagagtcaatattaagaaaaaatccaaatattatgcagatatgtcagagtatgtggtgtcctttacttcgagttcgtcaggatatatcaagtagacataattatcaaacattttgatcgttaactgataggacattgtctgtatatctatatgtaaagttgaaggacacggacagttttttgtttttatcctgtaacagtttttgaacacaatctgcttcgtttgaatatagaaataagtctgccaatacacaataaatatccatattaatactaacggggtgttggaaattatgatctccaaagactacatctctctaatctgaataaaactaggttttaatttatcgtgagtatttattgtatgtaaaggcaaatgcaacgaagaataatcaatcttgcaagtcccatgtagaatacgaaaacaagagttggacaaacacagaccactggtcacactagaggtggtataaacactgacccctggacacaccagatgtgggaccagtgt
gi|1 : gtgatcaaccatgggaattggaggtcaaatgtggaattcctcaaaaatgagatttttggtttgaaattacactcattatgccttctcagaaattaaaacaattgcgttcttatttctcctctttatggatatttgacgacatttatatggtacccttcattatattgaatttaattaacttctaacacttaaaattataacatcgtgttaaacgtaataatagtccactccccaaaacatatatacaagtatagtgtagggtaacacagacatccaacaaaagcgaaggcagggtcaggtgccatggaggagaaagcatcctttgctgacgggtgatatccgccgtgagcccttagtcaagataaagtaaacgggattacccgtactcaaatctagtaggacaatgacagtctaacacagggtatgaaacaaatcagtcaacttttgacttagcgataattcaaagttggaaactatttcagtatagcgactgtagaaattgcaaaatgataattgttataaccctggaacatcaacgttttcttagcagttgatctcgctttaaaaaaccctcatacacatagcatgctcttacattttgactcaactgggagatatacacatcataagcaggtgatagttattggtaccgtatatgatttatattgtatattactacaaagaaaggaaaagttgacggttgcaaagttaaggtcatcacgcttaccatataatgtagttgtcagtctgccattagagtcaatattaagaaaaaatccaaatattatgcagatatgtcagagtatgtggtgtcctttacttcgagttcgtcaggatatatcaagtagacataattatcaaacattttgatcgttaactgataggacattgtctgtatatctatatgtaaagttgaaggacacggacagttttttgtttttatcctgtaacagtttttgaacacaatctgcttcgtttgaatatagaaataagtctgccaatacacaataaatatccatattaatactaacggggtgttggaaattatgatctccaaagactacatctctctaatctgaataaaactaggttttaatttatcgtgagtatttattgtatgtCTGGTCCCACATCTGG--TG-TGT-CCA---G-GGGTCAGTGTTTATACCACCTCTaaacactgacccctggacacaccagatgtgggaccagtgt
gi|10 : gtgatcaaccatgggaattggaggtcaaatgtggaattcctcaaaaatgagatttttggtttgaaattacactcattatgccttctcagaaattaaaacaattgcgttcttatttctcctctttatggatatttgacgacatttatatggtacccttcattatattgaatttaattaacttctaacacttaaaattataacatcgtgttaaacgtaataatagtccactccccaaaacatatatacaagtatagtgtagggtaacacagacatccaacaaaagcgaaggcagggtcaggtgccatggaggagaaagcatcctttgctgacgggtgatatccgccgtgagcccttagtcaagataaagtaaacgggattacccgtactcaaatctagtaggacaatgacagtctaacacagggtatgaaacaaatcagtcaacttttgacttagcgataattcaaagttggaaactatttcagtatagcgactgtagaaattgcaaaatgataattgttataaccctggaacatcaacgttttcttagcagttgatctcgctttaaaaaaccctcatacacatagcatgctcttacattttgactcaactgggagatatacacatcataagcaggtgatagttattggtaccgtatatgatttatattgtatattactacaaagaaaggaaaagttgacggttgcaaagttaaggtcatcacgcttaccatataatgtagttgtcagtctgccattagagtcaatattaagaaaaaatccaaatattatgcagatatgtcagagtatgtggtgtcctttacttcgagttcgtcaggatatatcaagtagacataattatcaaacattttgatcgttaactgataggacattgtctgtatatctatatgtaaagttgaaggacacggacagttttttgtttttatcctgtaacagtttttgaacacaatctgcttcgtttgaatatagaaataagtctgccaatacacaataaatatccatattaatactaacggggtgttggaaattatgatctccaaagactacatctctctaatctgaataaaactaggttttaatttatcgtgagtatttattgtatgtaaaggcaaatgcaacgaagaataatcaatcttgcaagtcccatgtagaatacgaaaacaagagttggacaaacacagaccactggtcacactGTTATCAG-TAAAAAGGC--GCAAAGGTTA--ACTAT-GTGTACAAAGC-GTAA-CATCAATGAAATC-CAT-----AAAAGA-A-TGCATT-ACGA-AA-ATCAGGTG--TA-GG-------GCAACC-ACGGtgt
gi|11 : tggatagcCCGTGTTTAC-CTA----TT-G------------CT---C-AC-----CTTT-GT--AGGAGT-CATTA----ATCAGATTGATCACTATTACCTGCCTATCTTCACCT-TT-T--TC-AT---A-------CA------TGTACATCA-AATAT-gaacattttcg
gi|13 : ccaggaca-TTA--AC-AT-GTGT-CAAA-CCGTAATCAT------AATC-CAA-----AAAAC--A-TA---T-AC-A-AA-ATCGAGTG--TAGGG-------GCAA-C-ACGGA---CCTCCAACAAAAGCGAGG
gi|14 : tcaaaaaagcaG-TAT-CCA---A-CACTCCATTTTCTC-CCATCTCTT-AA-----------TT---C-GTA--TTACTT-GT--AGGAAT-GATGG----T----ATTGATAATAATT-CTT---TATCTTCACC
gi|15 : TTAATTGACAAAATTGACCAA-GATACAGG--GATAGCAGCGGGTGTGATAGATTGACAGTGGGTGTTC-AC-T
gi|16 : TGAATTAAGAGTTCGGCAAACACGTT--CCTTCGGTACAC-AAA-------A-GGT-----G---GAAT---CAtgtctatcactac
gi|16 : TGATTCCACCT--TT--TG-TGTACCG---A-AGGAACGTGTTTGC-CGAACTCTTAA------------TT------CA--TTCATT-------GGAT-TATGATAACA----ATTAA-CACTttcattggattatgataacaattaacact
gi|17 : --AGGAATTCGTGA----A----ATTGATCACTGTT-CGT---TATTTCCACTT-GT-TA-ACTGT---GTCATTGCCA------T
gi|18 : A--CTCTTT-AA--AGGAGT-TTTAA----AG---ATTGATCACTGTT-TGT---TATCTTCACTTGTT-T--CCaagatgtgtgaatactgc
gi|19 : tTT-GTTCAGGAAT-CATGAT---G----ATTGATCACTGTT-GGT---TATCTTCCCCT-TT-T--CCattta
gi|2 : taGCGAGG-T-A--AC-CTCGTGT-TAAA-C-GTAATCATC-----AATC-CAA-----AAAAC--A-TA---TAAC-ACAC-ATCGAGAAGCTT-GG-------GCAA-CAACGGAAACCCTCCGACAAAGCCGAAGGTA-GATCAGGT-GCGCATGGAGGAG-AA-CATCTTGCTGAAa
gi|2 : cgcTTGGGCAACAACGGAAACCCTCCG-ACA----AA-GCCGAA-GGT-----A---G-AT---CAGGTGCGC---ATGGA--GGAG--AACATCTT--GCTGAAAACGTCACACTCG---GTGAGCCCGCTA---GTCGACAT--AATTAAG--TA---ATCCGGGATTACCCGTA-----GTCAAATCTAGTAAGCAAATGACAGTCCTACACCAATGCGTATGTAAACAAATCCAGTCAACCATATGAACTTAGTGATACTTTGTAATaacgtcacactcggtgagcccgctagtcgacataattaagtaatccgggattacccgtagtcaaatctagtaagcaaatgacagtcctacaccaatgcgtatgtaaacaaatccagtcaaccatatgaacttagtgatactttgtaatcccccccccgccaaaaaaaacaagggtatcataggcgacaccgtagaaacattgcgaaatgcatggactttaacggagattccgtttaactatcaacctcgcaactctcaacactttttgttaagtcagcttgcgcctcgctttaaacatcccgcatacgccaatagcatctctttgcgtatcgaatccaacctgcgagataatacacatccataagcagctcgtgatcagtggtatatctaaacatagaaagggaaagttgacgatttgcaagttaaagctcatcacgccttattcatatagtgtaagtctgtcagtctgccattcagaggtcaattgttaagtaacatatcccaaatatgaagcagaatctgtcagtctgtggtgtccctt
gi|20 : cgcgcgaggtaacctcgtgttaaacgtaatcatcaatccaaaaaacatataacacacatcgagaagcCAAAAGCGAAGGTAGGATCAGGT-GC-CAcccccccccgccaaaaaaaacaagggtatcataggcgacaccgtagaaacattgcgaaatgcatggactttaacggagattccgtttaactatcaacctcgcaactctcaacactttttgttaagtcagcttgcgcctcgctttaaacatcccgcatacgccaatagcatctctttgcgtatcgaatccaacctgcgagataatacacatccataagcagctcgtgatcagtggtatatctaaacatagaaagggaaagttgacgatttgcaagttaaagctcatcacgccttattcatatagtgtaagtctgtcagtctgccattcagaggtcaattgttaagtaacatatcccaaatatgaagcagaatctgtcagtctgtggtgtccctt
gi|21 : tagggtgcacatacacgtag--TTCTTT-AT--AGGAAG-CATGA----A----ATTGATAACTGTT-CGT---TAT-TTCA
gi|22 : ---A-GTGTCCGTGTTTGT-CCAACCCTT-G------------TTTTCT-GTA--TTCTttt
gi|23 : GGG--GGAGTAAACATCCTCCACTG-ATCGGTCACACACGgg
gi|24 : TGTGATCAA-TACAAAAA--GGCGAAA-TTA--AC-ATTGT
gi|3 : tTATAT-AAATGTATTTGA-TATAAAT--TAGCGAAA-TTA--AC-AATGTAT-TAAA-C-GTAATAAT------AATCATAA-----AAAACA-AACA---T-AC-A-AG-GTCGAGTG--TA-GGACAAGCCGCAA-T-ACGGA---CCTCCGACAAAAGCGAAGACAGGATCAGGTTGC-CATGGAGAGT-AAGCATCCT-CTGAAT-AAGAGCTGGGTAACCACGGA--CCCTTGG-ACAC-AAAA-G----A-GGT-----G---GGAT---CAGGTGGTT---A-GGA--GGAATAAACATCCTCTGCTGA-CCGGTCACACCCGCC-GTGAGCCC-TTATTAGTCGAAAA--AA--AAG--TA---A-ACGGGATTACCCGTC-----GTCAAATCCAGCACGAAAATGACAGTCTAACA-AA--GGGTATG-AAACAAAT-CA----A-CATATG-A--TAGTGCTAATTTGTAATAGCAAACAAGATTATTATATTCGAAAACTAATTTTCTTAGTTTAC----TTAATTAA-GATATAGG--GCTCACGGAGGGTGTGATCGGTCAACAGTGGATGTTT-AC-TCCTCCTAACCACCTGATCCCACCTCTTT--TG-TGT-CCA---A-GGGTCCGTGTTTAC-CCAGCTCTT-A------------TT---CAACA--TTCTTT-GT--AGGAAT-CATAA----A----ATTGATCACTGTT-CGT---TATCTTCACTT-TT-T--CCTAT---ATTGTTGTCA------TGTTTATC--AATAT-TGCTGGATGAAGTA
gi|4 : attaaTAT-GAATATTATCAA-TACAAAAA--GGCGAAG-TTA--AC-ATTGTGT-CAAA-C-GTAATCAT------AATC-CAA-----AAA-CA---TA---T-AC-A-AA-ATCGAGTG--TA-GG-------GCAA-C-ACGGA---CCTTCGACAAAAGCGAAGGTAGGATCacatttctttaatggaaaaa
gi|5 : ttttcgattgaaataaaataaatgtgattattaggtattttctgcctattaaaatgttgttgatgtttgaaatgataacatttgttttt-GAAACAGG--GTTCAAGGGGGGGGGGGGCTTTCAATAGGGCATGCTT-AC-TCCTCTAAATA---TG----CA------------TGT-TCATATA-TGGT---TGTTTGT-TCTTCTCTT-AAT----------TT---T-GAA--TTCTT--GC--AGGATG-TATGG----C----ATTGA-CATTGCT-------TATGTTCACTT-GT-T--C-------ATTAATATGA------TGTTTATC--AATTT-Tcatatcttgttaagaaataa
gi|6 : attCCGATTCC--CTCTTC--TGGTAT-ACT---A-GGATTCGTGTT-GC----TCTCTT-ACACAACTAAATTTT---T-GCA--TTCCTG-AT--AGGAGT-TATAT----A----ACTGACCACTGGT-CAT---TATCTTCACCC-TTGTAACCTATCAAATTCTTTTAATTCCTTTGTTTACCTAAACATCTGATGAAAGAGGTA
gi|7 : AACACGGT--ATCTC----CACCAAAATGC--GA-AGTCGGCAGTCTGGATATTCAAGTGCCCCTAATGGAACGGAGTGGA-GTCCTTTGCAGAACCGGT-GCACCCGCCAGTGAGCCC-TTAC-GGTCGGAAACCAA--ACGTTTATATA-AC-GTATTACCCGTACTCACGTCAAATCT
gi|8 : gggTTTAT----TTGATAAAAGATATAGGCGGCCCATGACGTGTGCA---GATCAGCAG-GGATGCTTTACCTCCTCCAGACAG--TGATCGCAT---TTTGATG-TGT-CCA---GTGGGTCCATGTTTAC-CTTGAT-TT-AAA----------TT---T-GCA--TTCTTCAAT--GAAAAT-TATGG----A----ATT
gi|9 : GGTGTTATTTGTCAACAATTGATGCCT-TT-TTCTCCGAAGAATCTGATCCAATTTCTGT--TG-TTT-CTA---A-GAGTCCTTGTT--C-CTAAATATTCG------------CT---C-GTATGTTCTCT-GT--ATCAGT-CATGA----G----A
blockSeqs : . T . GGC G . T C A G C CAATGA A . AAA CAT A G C . GC G ACAAGCC C A AAC T G . G G . A AAA GGTA C AGCCGA . CGGCAGTCT A ATT CCCTA T AC T CC AA C C A G TTA G AATT TT TATA G CTCAC A CCAAT T C G C A C . T A CG A TGATCGG T T C A AT CATCTGG G A TAT T TA A C ACACAACTAAATT TTCT TG GTTC T ATCAG T A GCC C G G AACCTATCAAATTCTTTTAATTCCTT TA C A A
blockSeqs : . G . AAG . . . T . . . C . . AA . . . . . . . . . . . . . . . . C T CGA . ATGCG . G G . GC T . T CT AA C C . . CG G CCAA . AT G . C AA . . . . . . . A . . G GGGGCTT G . . A G CCTCTTT . . . . TA . T AAT CA . AAT . TAACA T . . C . . AACTGTGTCATTGCCA . .
blockSeqs : A . TTA . . . T . . . . . . A . . . . . . . . . . . . . C A GGA . AG . A G . TT . . T TT A C . . . . G AA . A . . . . C TTATTTG T . . G . TTTCTGT . . . . CT . A AAA C . GT . AG T . . T . . CCTATATTGTTGTCA . .
blockSeqs : T . AAG . . . T . . . . . . A . . . . . . . . . . . A T . . . . G . . . . . A . CAGA . . . CTCTTC . . . . TG . A AA C . GT . TG T . . C . . CATTAATATGA
blockSeqs : . . . . . . . . . . A . . . . . . . . . . TTTTGA . . . . TG . G AA T . AA . T T . . C . .
blockSeqs : . . . . CCTTT . . . . TA . T CG T . AT . A T . . C . .
blockSeqs : . . . . . TG . T G T . GT . A T . . G . .
blockSeqs : . . . . TA . G G C . GC . A C . . C
blockSeqs : . . G . A A . . AT . C . . . .
blockSeqs : . . . . GT . A .
blockSeqs : . . . A
blockSeqs : . G
blockSeqCons : AAG** ** ***** A*** GA** AG***** AA************ CCTGTATTATTNTNA***********
originalCons : NNNNNTATAT-GAATGTNATCAA-TACAAANACTGGCGAAG-TTA--AC-ATCGTGT-CAAA-C-GTAATCAT------AATC-CAA-----AAAACA-A-TA---T-AC-A-AA-ATCGAGTG--TA-GG-------GCAA-C-ACGGA---CCTCCGACAAAAGCGAAGGTAGGATCAGGT-GC-CATGGAGGAG-AAGCATCCT-CTGAATTAAGAGTTGGGCAANCACGGA--CCCTCGG-ACAC-AAAA-GC--GA-GGT-----G---GGAT---CAGGTGCNC---ATGGA--GGAGTAAACATCCTCCGCTGAACCGGTCACACCCGCC-GTGAGCCC-TTAC-GGTCGAAAA--AA--AAG--TA---A-ACGGGATTACCCGTA-----GTCAAATCTAGTANGAAAATGACAGTCTAACA-CA--GGGTATG-AAACAAAT-CAGTCAA-CATATG-ACTTAGCGATAATTTGTAATAGCAAACAAGATTATTATATTCGAAAACTAATTTTCTTAGTTTAC----TTGATNAA-GATACAGG--GCTCACGGNGGGTGCGATCGGTCAACAGTGGATGCTT-AC-TCCTCCGAACAACCTGATCCCACCTCTTT--TG-TGT-CCA---A-GGGTCCGTGTTTGC-CCANCTCTT-A------------TT---C-GCA--TTCTTT-GT--AGGAAT-CATGA----A----ATTGATCACTGTT-CGT---TATCTTCACCT-TT-T--CCTAT---ATTATTGTCA------TGTTTATC--AATAT-TGNTGGANGAGGTA
finalCons : NNNNNTATAT-GAATGTNATCAA-TACAAAAAG--GCGAAG-TTA--AC-ATCGTGT-CAAA-C-GTAATCAT------AATC-CAA-----AAAACA---TA---T-AC-A-AA-ATCGAGTG--TA-GG-------GCAA-C-ACGGA---CCTCCGACAAAAGCGAAGGTAGGATCAGGT-GC-CATGGAGGAG-AAGCATCCT-CTGAATTAAGAGTTGGGCAANCACGGA--CCCTCGA--CAC-AAAAG-----A-GGT-----G---GGAT---CAGGTGCNC---ATGGA--GGAGTAAACATCCTCCGCTGAACCGGTCACACCCGCC-GTGAGCCC-TTAC-GGTCGAAAA--AA--AAG--TA---A-ACGGGATTACCCGTA-----GTCAAATCTAGTANGAAAATGACAGTCTAACA-CA--GGGTATG-AAACAAAT-CAGTCAA-CATATG-ACTTAGCGATAATTTGTAATAGCAAACAAGATTATTATATTCGAAAACTAATTTTCTTAGTTTAC----TTGATNAA-GATACAGG--GCTCACGGNGGGTGCGATCGGTCAACAGTGGATGCTT-AC-TCCTCCGAACAACCTGATCCCACCTCTTT--TG-TGT-CCA---A-GGGTCCGTGTTTGC-CCANCTCTTAA------------TT---C-GCA--TTCTTT-GT--AGGAAT-CATGA----A----ATTGATCACTGTT-CGT---TATCTTCACCT-TT-TCCTGTATTATTNTNA-----------TGTTTATC--AATAT-TGNTGGANGAGGTA
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): TTTCGCTCGAAATTCAAAAAAACAAATCAACCCTTGACTATAAGTATCTTGTGTATTTGTGCTGTTGCAAGTCGGACAAATTTGGTTTCTTCATCTCGGACATC
Alignments
lowQualScore : 1 111 1 222222 11111 11111 1 2222222 111 1 1 1 1 4 1 11 222 5555 22222 11 11 11 1 1 333 111111 11 11111 22222 22222 1 1 1 1 2222 1 11 1111111 11 111111111 33333333333333333 111111111 2222222222 222222 11 1
lowQualScore : 3 1 8 1 000 0 77 5 1 6 6 6 555555 6 66666 66666 99 6 6 3 99 6 1111111 6 6 444 0 0 3 6 3 0 4 0 4 88 6 555 6 6 1111 0 6 22222 3 11 6 11 11 5 2 0 0 555 2 666666 33 88888 2 55555 1 11111 3 3 6 3 3 6 0 8888 1 0 33 0 0 1 1111111 5 8 8 4 0 99 0 666666666 4 4 888888 33 4 1 11111111111111111 0 55 0 44444 3 777777777 1 4 777 1 5 5 2222222222 0 1 1 888888 88 3 1 1
lowQualScore : . . . . ... . .. . . . . . ...... . ..... ..... .. . . . .. . ....... . . ... . . . . . . . . . .. . ... . . .... . . ..... . .. . .. .. . . . . ... . ...... .. ..... . ..... . ..... . . . . . . . .... . . .. . . . ....... . . . . . .. . ......... . . ...... .. . . ................. . .. . ..... . ......... . . ... . . . .......... . . . ...... .. . . .
lowQualScore : 3 0 0 0 000 4 99 7 1 7 7 7 888888 7 77777 77777 22 7 7 3 22 7 7777777 7 7 000 0 0 3 7 3 0 0 7 0 33 7 000 7 7 7777 7 7 22222 2 00 0 00 44 0 5 0 0 555 5 000000 88 55555 5 00000 0 00000 3 3 7 3 3 7 7 3333 0 0 88 2 2 0 8888888 6 0 0 2 2 88 2 444444444 4 4 333333 77 0 0 77777777777777777 9 00 5 88888 1 555555555 3 0 000 6 0 0 3333333333 8 0 0 888888 33 3 0 0
consensus : NNNNNTATAT-GAATGTNATCAA-TACAAAAAGGCG---AAGTTA--AC-ATCGTGT-CAAA-C-GTAATCAT------AATC-CAA-----AAAA-----CA--TAT-AC-A-AAATCGAGTG--TA-GG-------GCAA-C-ACGGA---CCTCCGACAAAAGCGAAGGTAGGATCAGGT-GC-CATGGAGGAG-AAGCATCCT-CTGAAT-AAGNGTTGGGTAACCACGGA--CCCTC-G-ACACAAAAGC-G-AGGTAGGATCAGGTGCNC---ATGGA--GGAGTAAACATCCTCCGCTGAACCGGTCACACCCGCC-GTGAGCCC-TTAC-GGTCGAAAA--AA--AAG--TA---A-ACGGGATTACCCGTA-----GTCAAATCTAGTANGAAAATGACAGTCTAACA-CA--GGGTATG-AAACAAAT-CAGTCAA-CATATG-ACTTAGCGATAATTTGTAATAGCAAACAAGATTATTATATTCGAAAACTAATTTTCTTAGTTTAC----TTGATNAA-GATACAGG--GCTCACGGNGGGTGCGATCGGTCAACAGTGGATGCTT-AC-TCCTCCGAACAACCTGATCCCACCTCTTT--TG-TGT-CCA---A-GGGTCCGTGTTTGC-CCANCTCTTA---------A-TTC--GCA--TTCTTT-GT--AGGAAT-CATGA----A----ATTGATCACTGTT-CGT---TATCTTCACCT-TT-T--CCTAT---ATTATTGTNA------TGTTTATC--AATAT-TGNTGGANGAGGTA
Reference ( family-800 ) : NNNNNTATAT-GAATGTNATCAA-TACAAAAAGGCG---AAGTTA--AC-ATCGTGT-CAAA-C-GTAATCAT------AATC-CAA-----AAAA-----CA--TAT-AC-A-AAATCGAGTG--TA-GG-------GCAA-C-ACGGA---CCTCCGACAAAAGCGAAGGTAGGATCAGGT-GC-CATGGAGGAG-AAGCATCCT-CTGAATTAAGAGTTGGGCAANCACGGA--CCCTC-G-ACACAAAAG----AGGTGGGATCAGGTGCNC---ATGGA--GGAGTAAACATCCTCCGCTGAACCGGTCACACCCGCC-GTGAGCCC-TTAC-GGTCGAAAA--AA--AAG--TA---A-ACGGGATTACCCGTA-----GTCAAATCTAGTANGAAAATGACAGTCTAACA-CA--GGGTATG-AAACAAAT-CAGTCAA-CATATG-ACTTAGCGATAATTTGTAATAGCAAACAAGATTATTATATTCGAAAACTAATTTTCTTAGTTTAC----TTGATNAA-GATACAGG--GCTCACGGNGGGTGCGATCGGTCAACAGTGGATGCTT-AC-TCCTCCGAACAACCTGATCCCACCTCTTT--TG-TGT-CCA---A-GGGTCCGTGTTTGC-CCANCTCTTA---------A-TTC--GCA--TTCTTT-GT--AGGAAT-CATGA----A----ATTGATCACTGTT-CGT---TATCTTCACCT-TT-T--CCTGT---ATTATTNTNA------TGTTTATC--AATAT-TGNTGGANGAGGTA
gi|1 : TATATTGAATTTAATTAACTTCTAACACTTA---AAATTATAAC-ATCGTGT-TAAA-C-GTAATAAT------AGTC-CACTCCCCAAAA-----CA--TAT-AT-ACAAGTATAGTG--TA-GG-------GTAA-C-ACAGA---CATCCAACAAAAGCGAAGGCAGGGTCAGGT-GC-CATGGAGGAGAAAGCATCCT-TTG
gi|1 : gtgatcaaccatgggaattggaggtcaaatgtggaattcctcaaaaatgagatttttggtttgaaattacactcattatgccttctcagaaattaaaacaattgcgttcttatttctcctctttatggatatttgacgacatttatatggtacccttcatAGTGTAGGGTAA-CACAGA--CA-TC-C-A-ACAAAAGCGA-AGGCAGGGTCAGGTGC-C---ATGGA--GGAGAAAGCATCCTTTGCTGA-CGGGTGATATCCGCC-GTGAGCCC-TTA---GTC-AAGA--TA--AAG--TA---A-ACGGGATTACCCGTA-----CTCAAATCTAGTAGGACAATGACAGTCTAACA-CA--GGGTATG-AAACAAAT-CAGTCAA-CTTTTG-ACTTAGCGATAATTctgacgggtgatatccgccgtgagcccttagtcaagataaagtaaacgggattacccgtactcaaatctagtaggacaatgacagtctaacacagggtatgaaacaaatcagtcaacttttgacttagcgataattcaaagttggaaactatttcagtatagcgactgtagaaattgcaaaatgataattgttataaccctggaacatcaacgttttcttagcagttgatctcgctttaaaaaaccctcatacacatagcatgctcttacattttgactcaactgggagatatacacatcataagcaggtgatagttattggtaccgtatatgatttatattgtatattactacaaagaaaggaaaagttgacggttgcaaagttaaggtcatcacgcttaccatataatgtagttgtcagtctgccattagagtcaatattaagaaaaaatccaaatattatgcagatatgtcagagtatgtggtgtcctttacttcgagttcgtcaggatatatcaagtagacataattatcaaacattttgatcgttaactgataggacattgtctgtatatctatatgtaaagttgaaggacacggacagttttttgtttttatcctgtaacagtttttgaacacaatctgcttcgtttgaatatagaaataagtctgccaatacacaataaatatccatattaatactaacggggtgttggaaattatgatctccaaagactacatctctctaatctgaataaaactaggttttaatttatcgtgagtatttattgtatgtaaaggcaaatgcaacgaagaataatcaatcttgcaagtcccatgtagaatacgaaaacaagagttggacaaacacagaccactggtcacactagaggtggtataaacactgacccctggacacaccagatgtgggaccagtgt
gi|1 : gtgatcaaccatgggaattggaggtcaaatgtggaattcctcaaaaatgagatttttggtttgaaattacactcattatgccttctcagaaattaaaacaattgcgttcttatttctcctctttatggatatttgacgacatttatatggtacccttcattatattgaatttaattaacttctaacacttaaaattataacatcgtgttaaacgtaataatagtccactccccaaaacatatatacaagtatATACCACCTCTAG--TG-TGA-CCA---G-TGGTCTGTGTTTGT-CCAACTCTTGT--------T-TTC--GTA--TTCTAC-AT--GGGACT-TGCAA----G----ATTGATTATTCTT-CGT---TGCATTTGCCT-TT-caaagttggaaactatttcagtatagcgactgtagaaattgcaaaatgataattgttataaccctggaacatcaacgttttcttagcagttgatctcgctttaaaaaaccctcatacacatagcatgctcttacattttgactcaactgggagatatacacatcataagcaggtgatagttattggtaccgtatatgatttatattgtatattactacaaagaaaggaaaagttgacggttgcaaagttaaggtcatcacgcttaccatataatgtagttgtcagtctgccattagagtcaatattaagaaaaaatccaaatattatgcagatatgtcagagtatgtggtgtcctttacttcgagttcgtcaggatatatcaagtagacataattatcaaacattttgatcgttaactgataggacattgtctgtatatctatatgtaaagttgaaggacacggacagttttttgtttttatcctgtaacagtttttgaacacaatctgcttcgtttgaatatagaaataagtctgccaatacacaataaatatccatattaatactaacggggtgttggaaattatgatctccaaagactacatctctctaatctgaataaaactaggttttaatttatcgtgagtatttattgtatgtaaaggcaaatgcaacgaagaataatcaatcttgcaagtcccatgtagaatacgaaaacaagagttggacaaacacagaccactggtcacactagaggtggtataaacactgacccctggacacaccagatgtgggaccagtgt
gi|1 : gtgatcaaccatgggaattggaggtcaaatgtggaattcctcaaaaatgagatttttggtttgaaattacactcattatgccttctcagaaattaaaacaattgcgttcttatttctcctctttatggatatttgacgacatttatatggtacccttcattatattgaatttaattaacttctaacacttaaaattataacatcgtgttaaacgtaataatagtccactccccaaaacatatatacaagtatagtgtagggtaacacagacatccaacaaaagcgaaggcagggtcaggtgccatggaggagaaagcatcctttgctgacgggtgatatccgccgtgagcccttagtcaagataaagtaaacgggattacccgtactcaaatctagtaggacaatgacagtctaacacagggtatgaaacaaatcagtcaacttttgacttagcgataattcaaagttggaaactatttcagtatagcgactgtagaaattgcaaaatgataattgttataaccctggaacatcaacgttttcttagcagttgatctcgctttaaaaaaccctcatacacatagcatgctcttacattttgactcaactgggagatatacacatcataagcaggtgatagttattggtaccgtatatgatttatattgtatattactacaaagaaaggaaaagttgacggttgcaaagttaaggtcatcacgcttaccatataatgtagttgtcagtctgccattagagtcaatattaagaaaaaatccaaatattatgcagatatgtcagagtatgtggtgtcctttacttcgagttcgtcaggatatatcaagtagacataattatcaaacattttgatcgttaactgataggacattgtctgtatatctatatgtaaagttgaaggacacggacagttttttgtttttatcctgtaacagtttttgaacacaatctgcttcgtttgaatatagaaataagtctgccaatacacaataaatatccatattaatactaacggggtgttggaaattatgatctccaaagactacatctctctaatctgaataaaactaggttttaatttatcgtgagtatttattgtatgtCTGGTCCCACATCTGG--TG-TGT-CCA---G-GGGTCAGTGTTTATACCACCTCTaaacactgacccctggacacaccagatgtgggaccagtgt
gi|10 : gtgatcaaccatgggaattggaggtcaaatgtggaattcctcaaaaatgagatttttggtttgaaattacactcattatgccttctcagaaattaaaacaattgcgttcttatttctcctctttatggatatttgacgacatttatatggtacccttcattatattgaatttaattaacttctaacacttaaaattataacatcgtgttaaacgtaataatagtccactccccaaaacatatatacaagtatagtgtagggtaacacagacatccaacaaaagcgaaggcagggtcaggtgccatggaggagaaagcatcctttgctgacgggtgatatccgccgtgagcccttagtcaagataaagtaaacgggattacccgtactcaaatctagtaggacaatgacagtctaacacagggtatgaaacaaatcagtcaacttttgacttagcgataattcaaagttggaaactatttcagtatagcgactgtagaaattgcaaaatgataattgttataaccctggaacatcaacgttttcttagcagttgatctcgctttaaaaaaccctcatacacatagcatgctcttacattttgactcaactgggagatatacacatcataagcaggtgatagttattggtaccgtatatgatttatattgtatattactacaaagaaaggaaaagttgacggttgcaaagttaaggtcatcacgcttaccatataatgtagttgtcagtctgccattagagtcaatattaagaaaaaatccaaatattatgcagatatgtcagagtatgtggtgtcctttacttcgagttcgtcaggatatatcaagtagacataattatcaaacattttgatcgttaactgataggacattgtctgtatatctatatgtaaagttgaaggacacggacagttttttgtttttatcctgtaacagtttttgaacacaatctgcttcgtttgaatatagaaataagtctgccaatacacaataaatatccatattaatactaacggggtgttggaaattatgatctccaaagactacatctctctaatctgaataaaactaggttttaatttatcgtgagtatttattgtatgtaaaggcaaatgcaacgaagaataatcaatcttgcaagtcccatgtagaatacgaaaacaagagttggacaaacacagaccactggtcacactGTTATCAG-TA--AAAAGGCGCAAAGGTTA--ACTAT-GTGTACAAAGC-GTAA-CATCAATGAAATC-CAT-----AAAAGAATGCA--T-T-ACGA-AAATCAGGTG--TA-GG-------GCAACC-ACGGtgt
gi|11 : tggatagcCCGTGTTTAC-CTATTGCTCA----------------------CCTTT-GT--AGGAGT-CATTA----ATCAGATTGATCACTATTACCTGCCTATCTTCACCT-TT-T--TCgaacattttcg
gi|13 : ccaggacaCAAAAAAGCA------TTA--AC-AT-GTGT-CAAA-CCGTAATCAT------AATC-CAA-----AAAA-----CA--TAT-AC-A-AAATCGAGTG--TAGGG-------GCAA-C-ACGGA---CCTCCAACAAAAGCGAGGatacatgtacatcaaatat
gi|14 : tG-TAT-CCA---A-CACTCCATTTTCTC-CCATCTCTTA---------A-TTC--GTA--TTACTT-GT--AGGAAT-GATGG----T----ATTGATAATAATT-CTT---TATCTTCACC
gi|15 : TTAATTGACAAAATTGACCAA-GATACAGG--GATAGCAGCGGGTGTGATAGATTGACAGTGGGTGTTC-AC-T
gi|16 : TGATTCCACCT--TT--TG-TGTACCG---A-AGGAACGTGTTTGC-CGAACTCTTA---------A-TT----CA--TTCATT-------GGAT-TATGATAACA----ATTAA-CACTtgtctatcactac
gi|17 : --AGGAATTCGTGA----A----ATTGATCACTGTT-CGT---TATTTCCACTT-GT-TA-ACTGT---GTCATTGCCA------T
gi|18 : A--CTCTTT-AA--AGGAGT-TTTAA----AG---ATTGATCACTGTT-TGT---TATCTTCACTTGTT-T--CCaagatgtgtgaatactgc
gi|19 : tTT-GTTCAGGAAT-CATGAT---G----ATTGATCACTGTT-GGT---TATCTTCCCCT-TT-T--CCattta
gi|2 : taGCG---AGGT-A--AC-CTCGTGT-TAAA-C-GTAATCATC-----AATC-CAA-----AAAA-----CA--TATAAC-ACACATCGAGAAGCTT-GG-------GCAA-CAACGGAAACCCTCCGACAAAGCCGAAGGTA-GATCAGGT-GCGCATGGAGGAG-AA-CATCTTGCTGAAa
gi|2 : cgcTTGGGCAACAACGGAAACCCTCCG-ACA---AAGCCGAAGGTAG-ATCAGGTGCGC---ATGGA--GGAG--AACATCTT--GCTGAAAACGTCACACTCG---GTGAGCCCGCTA---GTCGACAT--AATTAAG--TA---ATCCGGGATTACCCGTA-----GTCAAATCTAGTAAGCAAATGACAGTCCTACACCAATGCGTATGTAAACAAATCCAGTCAACCATATGAACTTAGTGATACTTTGTAATaacgtcacactcggtgagcccgctagtcgacataattaagtaatccgggattacccgtagtcaaatctagtaagcaaatgacagtcctacaccaatgcgtatgtaaacaaatccagtcaaccatatgaacttagtgatactttgtaatcccccccccgccaaaaaaaacaagggtatcataggcgacaccgtagaaacattgcgaaatgcatggactttaacggagattccgtttaactatcaacctcgcaactctcaacactttttgttaagtcagcttgcgcctcgctttaaacatcccgcatacgccaatagcatctctttgcgtatcgaatccaacctgcgagataatacacatccataagcagctcgtgatcagtggtatatctaaacatagaaagggaaagttgacgatttgcaagttaaagctcatcacgccttattcatatagtgtaagtctgtcagtctgccattcagaggtcaattgttaagtaacatatcccaaatatgaagcagaatctgtcagtctgtggtgtccctt
gi|20 : cgcgcgaggtaacctcgtgttaaacgtaatcatcaatccaaaaaacatataacacacatcgagaagcCAAAAGCGAAGGTAGGATCAGGT-GC-CAcccccccccgccaaaaaaaacaagggtatcataggcgacaccgtagaaacattgcgaaatgcatggactttaacggagattccgtttaactatcaacctcgcaactctcaacactttttgttaagtcagcttgcgcctcgctttaaacatcccgcatacgccaatagcatctctttgcgtatcgaatccaacctgcgagataatacacatccataagcagctcgtgatcagtggtatatctaaacatagaaagggaaagttgacgatttgcaagttaaagctcatcacgccttattcatatagtgtaagtctgtcagtctgccattcagaggtcaattgttaagtaacatatcccaaatatgaagcagaatctgtcagtctgtggtgtccctt
gi|21 : tagggtgcacatacacgtag--TTCTTT-AT--AGGAAG-CATGA----A----ATTGATAACTGTT-CGT---TAT-TTCA
gi|23 : GGG--GGAGTAAACATCCTCCACTG-ATCGGTCACACACGttt
gi|24 : TGTGATCAA-TACAAAAAGGCG---AAATTA--AC-ATTGT
gi|3 : tTATAT-AAATGTATTTGA-TATAAATTAGCG---AAATTA--AC-AATGTAT-TAAA-C-GTAATAAT------AATCATAA-----AAAA-----CAAACAT-AC-A-AGGTCGAGTG--TA-GGACAAGCCGCAA-T-ACGGA---CCTCCGACAAAAGCGAAGACAGGATCAGGTTGC-CATGGAGAGT-AAGCATCCT-CTGAAT-AAGAGCTGGGTAACCACGGA--CCCTT-GGACACAAAAG----AGGTGGGATCAGGTGGTT---A-GGA--GGAATAAACATCCTCTGCTGA-CCGGTCACACCCGCC-GTGAGCCC-TTATTAGTCGAAAA--AA--AAG--TA---A-ACGGGATTACCCGTC-----GTCAAATCCAGCACGAAAATGACAGTCTAACA-AA--GGGTATG-AAACAAAT-CA----A-CATATG-A--TAGTGCTAATTTGTAATAGCAAACAAGATTATTATATTCGAAAACTAATTTTCTTAGTTTAC----TTAATTAA-GATATAGG--GCTCACGGAGGGTGTGATCGGTCAACAGTGGATGTTT-AC-TCCTCCTAACCACCTGATCCCACCTCTTT--TG-TGT-CCA---A-GGGTCCGTGTTTAC-CCAGCTCTT----------A-TTCA-ACA--TTCTTT-GT--AGGAAT-CATAA----A----ATTGATCACTGTT-CGT---TATCTTCACTT-TT-T--CCTAT---ATTGTTGTCA------TGTTTATC--AATAT-TGCTGGATGAAGTA
gi|4 : attaaTAT-GAATATTATCAA-TACAAAAAGGCG---AAGTTA--AC-ATTGTGT-CAAA-C-GTAATCAT------AATC-CAA-----AA-A-----CA--TAT-AC-A-AAATCGAGTG--TA-GG-------GCAA-C-ACGGA---CCTTCGACAAAAGCGAAGGTAGGATCacatttctttaatggaaaaa
gi|5 : ttttcgattgaaataaaataaatgtgattattaggtattttctgcctattaaaatgttgttgatgtttgaaatgataacatttgttttt-GAAACAGG--GTTCAAGGGGGGGGGGGGCTTTCAATAGGGCATGCTT-AC-TCCTCTAAATA---TG----CA------------TGT-TCATATA-TGGT---TGTTTGT-TCTTCTCTTA---------ATTTT--GAA--TTC-TT-GC--AGGATG-TATGG----C----ATTGA-CATTGC----T---TATGTTCACTT-GT-T--C-------ATTAATATGA------TGTTTATC--AATTT-Tcatatcttgttaagaaataa
gi|6 : attCCGATTCC--CTCTTC--TGGTAT-ACT---A-GGATTCGTGTT-GC----TCTCTTACACAACTAAA-TTTTTGCA--TTCCTG-AT--AGGAGT-TATAT----A----ACTGACCACTGGT-CAT---TATCTTCACCC-TTGTAACCTATCAAATTCTTTTAATTCCTTTGTTTACCTAAACATCTGATGAAAGAGGTA
gi|7 : TCAAGTGCCCCTAATGGAACGGAGTGGA-GTCCTTTGCAGAACCGGT-GCACCCGCCAGTGAGCCC-TTAC-GGTCGGAAACCAA--ACGTTTATATA-AC-GTATTACCCGTACTCACGTCAAATCT
gi|8 : gggaacacggtatctccaccaaaatgcgaagtcggcagtctggatatTTTAT----TTGATAAAAGATATAGGCGGCCCATGACGTGTGCA---GATCAGCAG-GGATGCTTTACCTCCTCCAGACAG--TGATCGCA---TTTTGATG-TGT-CCA---GTGGGTCCATGTTTAC-CTTGATTTAA---------A-TTT--GCA--TTCTTCAAT--GAAAAT-TATGG----A----ATT
gi|9 : GGTGTTATTTGTCAACAATTGATGCCT-TT-TTCTCCGAAGAATCTGATCCAATTTCTGT--TG-TTT-CTA---A-GAGTCCTTGTT--C-CTAAATATTC---------G-CTC--GTATGTTCTCT-GT--ATCAGT-CATGA----G----A
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): TTTCGCTCGAAATTCAAAAAAACAAATCAACCCTTGACTATAAGTATCTTGTGTATTTGTGCTGTTGCAAGTCGGACAAATTTGGTTTCTTCATCTCGGACATC
Unaligned ( gi|22 ): AGAATACAGAAAACAAGGGTTGGACAAACACGGACACTGG