lowQualScore : 2222222222222222222222222222222222222222222222222222222 111111111111111111111111111 11111111111111111111111111 22222222222222222222222222222222222222222222222222222222222222222222222222 11111111111111111 222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 11111111111111
lowQualScore : 1 8888 3333333333333333333333333333333333333333333333333333333 22 1 1 333 22 666666666666666666666666666 1 222222 44444444444444444444444444 11 00000000000000000000000000000000000000000000000000000000000000000000000000 1 1 77777777777777777 33 2222 1 1 55 11 1 2 22 2 22 1 1 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 44444444444 1 8888888888888 1 11111111111111 1 22 1 1 1 22 222 11 1 2 333333333 66666666666666666666666 444444444444444444444 1 2222222222222 11 1 11 111 2222222222 222222222 222222 33333333333333 888888888888888888888888888888888888888888888888 111111 11 88888888888888888888888888888888888888888888888888888888888888888888888888 1111 3333333333333 1 4444444444444444444444444444 1 1 33333 22222222 33333 3333333333333 44 1
lowQualScore : 5 6 6 5555 4444444444444444444444444444444444444444444444444444444 4 6 2 11 0 2 3 5 3 333 33 000000000000000000000000000 5 999999 2 88 99999999999999999999999999 77 4 4 1 9 55555555555555555555555555555555555555555555555555555555555555555555555555 5 6 5 55555555555555555 77 8888 2 7 6 3 9 4 3 1 2 3 55 99 7 6 0 6 66 3 7 6 2 2 77 66 2 7 3 6 6 6 0 4 888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 4 22222222222 5 0000000000000 5 4 3 77777777777777 5 11 6 6 5 6 6 6 7 6 5 11 6 6 222 22 5 0 6 2 7 000000000 2 66666666666666666666666 3 777777777777777777777 0 8 8 5 0000000000000 7 33 3 3 11 444 99 3333333333 222222222 666666 3 77777777777777 8 222222222222222222222222222222222222222222222222 1 3 444444 33 99999999999999999999999999999999999999999999999999999999999999999999999999 2222 3333333333333 1 8888888888888888888888888888 6 6 1 5 77 999 77 3 77777 6 77 22222222 2 33333 1111111111111 5 0 11 1 2 6
lowQualScore : . . . .... ....................................................... . . . .. . . . . . ... .. ........................... . ...... . .. .......................... .. . . . . .......................................................................... . . . ................. .. .... . . . . . . . . . . .. .. . . . . .. . . . . . .. .. . . . . . . . . .................................................................................................................. . ........... . ............. . . . .............. . .. . . . . . . . . . .. . . ... .. . . . . . ......... . ....................... . ..................... . . . . ............. . .. . . .. ... .. .......... ......... ...... . .............. . ................................................ . . ...... .. .......................................................................... .... ............. . ............................ . . . . .. ... .. . ..... . .. ........ . ..... ............. . . .. . . .
lowQualScore : 0 0 0 0000 5555555555555555555555555555555555555555555555555555555 0 0 5 00 5 5 0 0 0 333 00 555555555555555555555555555 0 555555 5 00 00000000000000000000000000 00 7 7 0 0 55555555555555555555555555555555555555555555555555555555555555555555555555 0 0 0 00000000000000000 22 3333 3 0 0 7 7 7 7 0 5 0 00 00 0 0 0 0 55 0 5 0 5 5 55 55 5 0 0 0 0 0 5 0 555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 0 55555555555 0 0000000000000 5 0 0 55555555555555 0 00 0 0 0 0 0 0 0 0 0 00 0 0 000 00 0 3 0 5 3 777777777 8 22222222222222222222222 3 666666666666666666666 8 0 0 0 0000000000000 3 88 2 8 00 000 88 6666666666 777777777 666666 1 77777777777777 6 999999999999999999999999999999999999999999999999 0 9 444444 88 33333333333333333333333333333333333333333333333333333333333333333333333333 1111 9999999999999 0 3333333333333333333333333333 7 7 4 0 33 444 44 0 66666 7 77 33333333 2 55555 7777777777777 7 7 33 7 2 0
consensus : NTATATACTTACAAAATACACAAGATCCATACACTAACACCTGGTAGTAAAACATCCACATCACCTATCATTCTTCATATA---CTGAATCATCT-----------TACA-TGCAGCATNGNTNANNCTCAGCCCAAGCNGCAATTCANATCACGCATTTCGCGCANGTTAGNAAATNACCTTCACTAACCATGCTACCNCTG--AATACGCAAGATCCATACACTAACACCTGGTAGTAAAACATCCACATCACCTATCATTCTTCATATACTGAACCANCTNNCGGCTATTCTCAAGCGCCA-AGTTCAGCCTCAAC-CGAGCCGCAATTTACATCACGCATTTCGCGCAGGTTAGCAAATTACCTTCACTAACCATGCTAC-CT-----ATACGC---ACCCA-A--------CACTGATAATAGTAAAANATCCATAT-----ATCATTATTTATATACTGAACCAGCTATCGGCTATTCT-CAAGCAC---------CCTCAACNCGAGCCGCAATTTA----CATCACGCATTTCGCGCANGTTAGCGAATTANCTTCACTAACCATACTACNCCTACGCTACCNAACACTCGCGTTATTACGNATGTTGCTAAAATGGCAATACAATCCAGGNCCCGTCATTNCCCGCAACGAATTATTACNCAAGCACACGNACAAACTTTCGTCAATCANNCCNTAGGCATATGGCCTAAGGTTCCCGTTCATCCANCCTCTTCCTCCATTATTCTTTATGCTACCTGTCNGACNCTCAGATTTAAGCCATTTTNAATCCATTGATTAGNATCCATCGATNAAGGGAGGGTANNNAGTAGCACATCGNNTNNANTCCTAANNTTCGCTCTANNANNCATNGGAGCAATT---CATTGCANTAATACAANATATTCCACAACTTGTTTTGCCAGGGCCTT-ATATANATACGTGTACTNCCCAGGAAACAAATCCTTAACCTCATTTACAACATCACGCATTGGATGCCTAGTTAGTATCATCTTGTCTGATACTTCTCGGGTTTACTCAACATAGTCCATGACATGCTAGAACATATACCTAACTATGCTTCTATTCAACTGGCGGTCTT-CTGTCATGGCGTTTAGCAAAA-TGCTGTNAGCTTGTGGCGGATGTCTTCATGTATG--C-C-TTTG-----T---TANACATACATGAAGACATNCG------GC-CGA---------ATTTTGC-TAAG-CCTGCCACGTATTCTGTTTCCTTCCAG-TCCGTGGAC--AATAATTGGNCTT--ATTTA---ATCGA-CA-ATTT---TCGATCGATAT---AGAGCCATCGAAT-ATA-TGATACGCACATTG-----ATTGATCGGAACATC--GANAT------ATTGATT-------GA-A-ATGTTG--TGTTNG-ATTGATCCACTGAAATA------TTGAT-GATTGA---A--------T-GAT----ATA-------TT----T-ATTGAT--N--GA-TTGAT---A----T----T--TGATTG----ATTG---GANT-----ACGGACTGACTGTTGA-TGCT-----A-CAGCATTACTA-C-C-AAA-AGTC-GTTGTAGATCATTNCATTATACCNAATACAATGCTGA-A-TAATGT-ATTG-ATATAA----TG-CTGTCAGTTTTAATC--A--AATGTT---TTA--AN--AAATAAAGCCATGACAAAGACCGCCAATAT--AGTGTTGTTGTTCTGTTCTATTGAAATAAT
Reference ( gi|1 ) : TTATATACTTAGAAAATACACAAGATCCATACACTGATACC----AGTAAAACATCCACATCACCTATCATTCTTCATATAGTATTGAACCAGCTATCAGCTATTATACACTGTAGCATAGTTAAGTCTCAAT---AGCTGCAATCCACATCACACATTTTCCACAAGTTAGCAAATTACCTTCACTAATCATGCTACCACTG--AATACGCAAATTCCATACACAGATACA----AGTAAAACATCCACATCATCTATCATTCTTTATATACTGAACCAGCTTTCAGCTATTCT-----ACCGTATTTCAGACTCAATTCAAGCTGCAATTTACATCACACATTTCGCACAAGTTAGCAAATTACCTTCACTAAGCATGCTCCCCCTGAAAATACGCTAGATCCATA--------CACTGATACTAGTAAAACATCCACATCACCTGCCATTCTTCATATACGGAACCAGCTATCGGCTATTCTGCATGTACATAGTTCAGCCTCAACG-AAGCTGCAATTTA----CATCACACAATTTGCACAGGTTAACAAATTACCTTCACTAATCATACTACCCCTACGCTACCAAACAC--GCGTTATTACGAATGTTGCTTAAACGGCAAT-CAATCTAGGCACCATCATTACCAGTAACGAATTGTTATCCAAGCACATGCACA--CTTTCGTCAATCAGACCGTAGGCTTATGGCCTAAGGTTCCTGTTCATTCAACCTCCTCCTCCATTACTCTTTATGCTATCTGTCGGACACTCAG----AAAC--TTTTCAA----------AG----C-TCGCTGAAGAAAAGTTAAGC-----C-CATCGCTTATATTTCT--ACTTGGC---AGTAAGCATAGGAACAATTATTCATTGCATT--TACAACATCTTCCACAACTTTTTTTGTCAGGGCCTTAATATATATATATATACTATCCAGGAAA--------------CATTTAAAACACAACGCATTGGATGCTTAGTTGGTATCCTCTTGTCCGATACTTCCCGGATTTACTCTACATAGTCCATGACATGTTAGCACATACCCTTGACTATCCATCTATCTAACTGGCAGTCTTCCTGTCACGGCGTTTAGCAAAAATGTTGCCCGCTTGTGGCGGATGTCCTCATGTATG------TTTG-----T---TAGGCATACATGAAGACATATG------GC-CGA---------ATTTTGC-TAAG-CCTTCCACATATTCTGTTTCCTTCCAAGTCTGTGGAC--AATAATTGGACTT--ATTTA---ATCGA-CA-ATTT---TCGATTGATAT---AGAGCCATCGAAT-ATAATGATACGCATATTG-----GTTGATCGGAACATC--AATAT------ATTAATA-------GA-A-ATGTTG--TGTTCG-ATTGATTCACTGAAATA------TTGAT-GATTGA---A--------T-GAT----ATA-------TT----T-ATTGAT--A--GC-TTGAC---A----C----T--TGATTG----ATTG---GATT-----TTGGACTGACTTTTGA-TGTT-----T-CAGCATTACTA-C-C-AAA-AGTC-GTGGTAGAGCATTGCATTATATCTAACGCAATGCTCAAGTTAATGT-ATTG-ATATAT----TG-CTGTCAGTTTTGATC--G--AATGTT---TTA--AG--AAATAAAGCCATGACAAAGACCGCCAATATACAGTGTCGCTGCTCTGTTCTATTGAAATAAT
gi|3 : TATATACTTACAAAATACACAAGATCCATACACTAACACCTGGTAGTAAAACATCCACATCACCTATCATTCTTCATATA---CTGAATCATCT-----------TACA-TGC--CA-AGTTCAGCCTCAGTCT-AGCAGCAATTCAAATCACGCATTTCGCACAGGTTAGAAAATGACCTTTACTAATCATGCTACCCTTGAAAATACGAAAGATCCAT---------------------------ATATCAT-TAT------TTATATACTGAACCAGCTATCGGCTATTCTCAAGCACC----------CTCAACATGAGCCGCAATTTACATCACGCATTTCGCACAGGTTATCTAATTAACGTCACTAA------TC---------ACACGCAAGATCCATACATTGAATCACTGATAATAGTAAAAC
gi|2 : TAGCATTGATAATGCTTAACTCAAGCTGCAATTTACATCACACATTTCGCGCACGTTAGCAAATTACCTTCACTAACCATGCTA-CACT-----TACGCtcaaactacaatttaattacatcaccatttcgcacaagtgggcgaattatcttcactaaccatactacccctacgctaccaaacactcgcgttattacaatgttgctaaaatggcaatcaatccaggtcccatcattacccgcaacgaattattacacaagcacatgcacactttcgtcaatcattccgtaggcatatggcctaagattcctgttcattcaccctcttccttcattattctttatgctacctgtctgactctcagaaaccattttgaatccattgattaatatcctcgatgaaaaaagggtaagcagtagcacatcacatataattctccttggcaggaagcatgggagcaat
gi|3 : --AATACACAAGATCCATACACTAACACCTGGTAGTAAAACATCCACATCACCTATCATTCTTCATATACTGAATCATCTTACA-------T-----GCCA-AGTTCAGCCTCAGT-CTAGCAGCAATTCAAATCACGCATTTCGCACAGGTTAGAAAATGACCTTTACTAATCATGCTACCCTTGAAAATACG---------------------------------AAAGATCCATAT-----ATCATTATTTATATACTGAACCAGCTATCGGCTATTCT-CAAGCAC---------CCTCAACATGAGCCGCAATTTA----CATCACGCATTTCGCACAGGTTATCTAATTAACGTCACTAATCACACtacccaacactcgcattattacgtatgttgctaaaatggcaatacaatccagggtccgtcattcccgtaatgaattattatccaagcacacgaacaaactttcatcaatcagaccttaggcatatggcctaaggttcccgttcatccaacctcttcctccattattctttatgctacctgtcagacactcagatttaagcttttttaaagacattgattaagggagtactgtcattggttcgattcctaaaattcactctattattcattgcaattttgcaataataaaaatattccacaacttgttttatatatatacatgtactctccaggaaacaaatccttaacctcatttacaacatcacgcattggatgcctagttagtatcatcttgtctgatacttctcgggtttactcaacatagtccatgacatgctagaacatatacctaactatgcttctattcaatagcggtctttctgtcatggcgtttagcaaaatgctgtgtgcttgtggcggatgtcttcatgtatgtttgttaggtatacatgaagacatatggccgatatttacaaagcctgccacatattctatttccttccaggtctgttgacaatagttggacttatttaatcgacaattatcgatcgatatagagccatcgaaaatactgatacgcacattgattgatcagaacattgaaatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaacgttttgttggattgatccactgaaatatttatgattgattgatatacctttggttgagatattgatcgattgattgacatttgattgattgattgactgaaatttggactgattgttgagtgttgatactacagtattactacccaaaagtcgtggtagatcattgattatataaaatacaatgctgaaaataatgtattgatataaagctctcagttttgattaaatgttttaacaaataaagccatggcagagactgtccatatagtgttgctgttctgttctattaatataattaaagctctatcatctatacattaatatacctcacactatcatactatttcttttaaat
gi|2 : tatatacttacaaCTTAACTCAAGCTGCAATTTACATCACACATTTCGCGCACGTTAGCAAATTACCTTCACTAACCATGCTACACT------TACGCT--ACCCA-A--------CACTgcaagatccatacattgaatcactgataatagtaaaactcaaactacaatttaattacatcaccatttcgcacaagtgggcgaattatcttcactaaccatactacccctacgctaccaaacactcgcgttattacaatgttgctaaaatggcaatcaatccaggtcccatcattacccgcaacgaattattacacaagcacatgcacactttcgtcaatcattccgtaggcatatggcctaagattcctgttcattcaccctcttccttcattattctttatgctacctgtctgactctcagaaaccattttgaatccattgattaatatcctcgatgaaaaaagggtaagcagtagcacatcacatataattctccttggcaggaagcatgggagcaat
gi|2 : tagcattgataatgCTTAACTCAAGCTGCAATTTA----CATCACACATTTCGCGCACGTTAGCAAATTACCTTCACTAACCATGCTACACTTACGCTACCCAACACTCGCATTATTACGTATGTTGCTAAAATGGCAATACAATCCAGGGTCCGTCATTCCC-GTAATGAATTATTATCCAAGCACACGAACAAACTTTCATCAATCAGACCTTAGGCATATGGCCTAAGGTTCCCGTTCATCCAACCTCTTCCTCCATTATTCTTTATGCTACCTGTCAGACACTCAGATTTAAGCT-TTTTTAA----------AGA---CATTGATTAAGGGAG--TACTG-----T-CATTGGTTCGATTCCTAAAATTCACTCTATTATTCATTG---CAATT-----TTGCAATAATA-AAAATATTCCACAACTTGTTTT------------ATATATATACATGTACTCTCCAGGAAACAAATCCTTAACCTCATTTACAACATCACGCATTGGATGCCTAGTTAGTATCATCTTGTCTGATACTTCTCGGGTTTACTCAACATAGTCCATGACATGCTAGAACATATACCTAACTATGCTTCTATTCAA-TAGCGGTCTTTCTGTCATGGCGTTTAGC-AAAATGCTGTGTGCTTGTGGCGGATGTCTTCATGTATG------TTTG-----T---TAGGTATACATGAAGACATATG------GC-CGA---------TATTTAC-AAAG-CCTGCCACATATTCTATTTCCTTCCAGGTCTGTTGAC--AATAGTTGGACTT--ATTTA---ATCGA-CA-ATTA---TCGATCGATAT---AGAGCCATCGAAA-ATACTGATACGCACATTG-----ATTGATCAGAACATT--GAAAT------NNNNNNN-------NN-N-NNNNNN--NNNNNN-NNNNNNNNNNNNNNNNNAACGTTTTGTTGGATTGATCCAC-------T-GAA----ATA-------TT----T-A-TGAT--T--GA-TTGAT---ATACCT----T--TGGTTGAGATATTGATCGATT--------GATTGACATTTGA-Tcgcattattacgtatgttgctaaaatggcaatacaatccagggtccgtcattcccgtaatgaattattatccaagcacacgaacaaactttcatcaatcagaccttaggcatatggcctaaggttcccgttcatccaacctcttcctccattattctttatgctacctgtcagacactcagatttaagcttttttaaagacattgattaagggagtactgtcattggttcgattcctaaaattcactctattattcattgcaattttgcaataataaaaatattccacaacttgttttatatatatacatgtactctccaggaaacaaatccttaacctcatttacaacatcacgcattggatgcctagttagtatcatcttgtctgatacttctcgggtttactcaacatagtccatgacatgctagaacatatacctaactatgcttctattcaatagcggtctttctgtcatggcgtttagcaaaatgctgtgtgcttgtggcggatgtcttcatgtatgtttgttaggtatacatgaagacatatggccgatatttacaaagcctgccacatattctatttccttccaggtctgttgacaatagttggacttatttaatcgacaattatcgatcgatatagagccatcgaaaatactgatacgcacattgattgatcagaacattgaaatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaacgttttgttggattgatccactgaaatatttatgattgattgatatacctttggttgagatattgatcgattgattgacatttgattgattgattgactgaaatttggactgattgttgagtgttgatactacagtattactacccaaaagtcgtggtagatcattgattatataaaatacaatgctgaaaataatgtattgatataaagctctcagttttgattaaatgttttaacaaataaagccatggcagagactgtccatatagtgttgctgttctgttctattaatataattaaagctctatcatctatacattaatatacctcacactatcatactatttcttttaaat
gi|3 : tagcattgataatg-AAACTACAATTTAATTACATCAC-CATTTCGCACAAGTGGGCGAATTATCTTCACTAACCATACTACCCCTACGCTACCAAACACTCGCGTTATTAC-AATGTTGCTAAAATGGCAAT-CAATCCAGGTCCCATCATTACCCGCAACGAATTATTACACAAGCACATGCACA--CTTTCGTCAATCATTCCGTAGGCATATGGCCTAAGATTCCTGTTCATTCACCCTCTTCCTTCATTATTCTTTATGCTACCTGTCTGACTCTCAG----AAACCATTTTGAATCCATTGATTAATATCC-TCGATGAAAAAAGGGTAAGCAGTAGCACATCACATATAATTCT--CCTTGGC---AGGAAGCATGGGAGCAATtgattgattgactgaaatttggactgattgttgagtgttgatactacagtattactacccaaaagtcgtggtagatcattgattatataaaatacaatgctgaaaataatgtattgatataaagctctcagttttgattaaatgttttaacaaataaagccatggcagagactgtccatatagtgttgctgttctgttctattaatataattaaagctctatcatctatacattaatatacctcacactatcatactatttcttttaaat
gi|13 : tatatacttacaaaatacacaagatccatacactaacacctggtagtaaaacatccacatcacctatcattcttcatatactgaatcatcttacatgccaagttcagcctcagtctagcagcaattcaaatcacgcatttcgcacaggttagaaaatgacctttactaatcatgctacccttgaaaatacgaaagatccatatatcattatttatatactgaaccagctatcggctattctcaagcaccctcaacatgagccgcaatttacatcacgcatttcgcacaggttatctaattaacgtcactaatcacacgcaagatccatacattgaatcactgataatagtaaaactcCATTGCATT--TACAAC---TTCCACAACTTGTTTTGCCAGGGCCTT--TA-AAATATGTATACTACCCAGGAAA--------------CA
gi|5 : AACTGGCAGTCTT--TGTCATGGC-TTTAaatccttgcttcatttaaaac
gi|5 : gtagtctcgctgtcatggtgcgtaataaaatgtcagcttgtggcggatgtcttcatgtatgtacgcatttttcatacatacatgaagacatatgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncagtgattgattacaacttcgttggattggtatattgaatgattgatacttgattggtataatgattgattgacaatttcttgattgaaaacattgattgaataatgattgattgaaaacattgattgaattattgattgattcaaatacggactgactgttgatgctaaagcagtcgctgaagatcatttcattataccgagtacaattctgataatgtatttatgtaatgctgtcagttttaatcagaaatgttaaatcaagGTAGTCTCGCTGTCATGGTGCGTAATAAAA----TGTCAGCTTGTGGCGGATGTCTTCATGTATGTACGCATTTT-----T---CATACATACATGAAGACATATG------tagtgttgttgttctgttctattgaaatgataattccagcacttacaaccttaccctagtactgttgttttaattaggttttgcttgattataagccgaggttcaggattagttttaattatctcctcaaatgagtacattgaatactg
gi|4 : GTGTTTAGCAAAA-TGTTGTAAGCTTGTGGCGGnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncagtgattgattacaacttcgttggattggtatattgaatgattgatacttgattggtataatgattgattgacaatttcttgattgaaaacattgattgaataatgattgattgaaaacattgattgaattattgattgattcaaatacggactgactgttgatgctaaagcagtcgctgaagatcatttcattataccgagtacaattctgataatgtatttatgtaatgctgtcagttttaatcagaaatgttaaatcaagtaaagccatgacaaagactgccagtttagtgttgttgttctgttctattgaaatgataattccagcacttacaaccttaccctagtactgttgttttaattaggttttgcttgattataagccgaggttcaggattagttttaattatctcctcaaatgagtacattgaatactg
gi|7 : TGGCGGATGTCCGTATGTATCATCACTTTTG-----T---TATTCACACATGAAGACACATG------GCGCGA---------AT-TTGCTTAAG-CCTGCCATGGATTTTGTTTCTTTCCAGTTCCG-GGACCGAA-AATTAGCTTT--ATCCATGCATTG---A-AT-------GATTGACAT---AGATTAATTCAAC-ACATTGAT-TG---ATTAAAAACGTTGATTTAGACATT----CAT------ATTGATT-------GA------TTGATTGTTAT-ATTGATTTACTGAAGAA------TT-AT---TTGA---A--------T-AAT----TGG-------TT----T-ATAAAT--T--GA-TTG---------------T--TGATgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatgaattgactggttgattggaacattaataaattgattcattagaactttgttggattggtatattgaatgattgatacttgattgattggtataatgattgattgaccatttcttgattgaaaacattgattgaatcaggattgattgaaaacattgattgaattattgattgattcaaatacggactgactgttgatactaaaacagtcgctgtagatcatttcgttataccaagtacaattctgataatgtaattacatgtatgtaatgctctcagttttaatcagaaatgctaaattaagtgaagccatgacaaagactgtcagtttagtgctgttgttctgttctattgaaatgataattccagcacgtataaccctaccctagtactgatgttttaattatgctttgcttgattataagccgaggttcaggattagtcttaattatctgctcaagtgagtacattgaaaactgg
gi|2 : aATGTCTTCATGTATA------CCTA-----A---CAAACATACATGAAGACATCCG------CCACAAGCACACAGCATTTTGC-TAAA-Cgttgc
gi|5 : tagcattgataatgcttaactcaagctgcaatttacatcacacatttcgcgcacgttagcaaattaccttcactaaccatgctacacttacgctacccaacactcgcattattacgtatgttgctaaaatggcaatacaatccagggtccgtcattcccgtaatgaattattatccaagcacacgaacaaactttcatcaatcagaccttaggcatatggcctaaggttcccgttcatccaacctcttcctccattattctttatgctacctgtcagacactcagatttaagcttttttaaagacattgattaagggagtactgtcattggttcgattcctaaaattcactctattattcattgcaattttgcaataataaaaatattccacaacttgttttatatatatacatgtactctccaggaaacaaatccttaacctcatttacaacatcacgcattggatgcctagttagtatcatcttgtctgatacttctcgggtttactcaacatagtccatgacatgctagaacatatacctaactatgcttctattcaatagcggtctttctgtcatggcATGTCTTCATGTATG------TATGAAAAATGCGTA--CATACATGAAGACATCCGCCACAAGC-TGAC--------ATTTTAT-TACG-Catggccgatatttacaaagcctgccacatattctatttccttccaggtctgttgacaatagttggacttatttaatcgacaattatcgatcgatatagagccatcgaaaatactgatacgcacattgattgatcagaacattgaaatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaacgttttgttggattgatccactgaaatatttatgattgattgatatacctttggttgagatattgatcgattgattgacatttgattgattgattgactgaaatttggactgattgttgagtgttgatactacagtattactacccaaaagtcgtggtagatcattgattatataaaatacaatgctgaaaataatgtattgatataaagctctcagttttgattaaatgttttaacaaataaagccatggcagagactgtccatatagtgttgctgttctgttctattaatataattaaagctctatcatctatacattaatatacctcacactatcatactatttcttttaaat
gi|14 : gtagtctcgctgtcatggtATTTA------GC-C-A---------ATTTTGC-TAAAACCTGCCTCATATTCTGTT-------------GTGGCC--AATAACTGG-CTTTCATTTA---ATCAA-CACATT------GATTGAatgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncagtgattgattacaacttcgttggattggtatattgaatgattgatacttgattggtataatgattgattgacaatttcttgattgaaaacattgattgaataatgattgattgaaaacattgattgaattattgattgattcaaatacggactgactgttgatgctaaagcagtcgctgaagatcatttcattataccgagtacaattctgataatgtatttatgtaatgctgtcagttttaatcagaaatgttaaatcaagtaaagccatgacaaagactgccagtttagtgttgttgttctgttctattgaaatgataattccagcacttacaaccttaccctagtactgttgttttaattaggttttgcttgattataagccgaggttcaggattagttttaattatctcctcaaatgagtacattgaatactg
gi|6 : AC--AATTATACGTCCT--TTTTG---AGCGC-CA---TT---TTGACGAACATTCTAGAGACATCGAAT-ATACCGATTCG-ACATTG-----ATTGATCGCAACATCGAAAGATTGATTGATTGATGATTTATTGA-A-ATATTG--TGTCGG-ATTGATCCACTGAAATA------TTGAT-GATTGATTGACATACCCTT-GATTGAAATA-------TT----G-ATTGAT--T--GC-TTGAC---A----CTTGAT--TGATTG----ATTG---GATT-----TTGGACTGACTGTTGA-TACT-----A-CAGCATTACTGCC-C-AAA-AGTC-GTTGTAGA---------------TAATGTA---------TTGATAT-A----ATA----------CCGTCAGTTT--AAC--A--AAT---------------AAA----GCCATGACAAAGACCGCCAATAT
gi|9 : aTCGGGCTT--ATTTA---GTTGAACC-ATTA---TCGATCGATATT--AGAGCCATCGA-T-ATAATGATACGCACATTG-----ATTGATCGGAATATC--GAAAT------ATTGATT-------G--A-TTGTTAT-TGTTCGAATTGGTCCACTG-AATA------TTGAT-GATTGA---A--------TCAAT----ATACC-----TT----TGATTGAtgtg
gi|5 : A-CA-ACTTCGTTGGATTGGTAT---A------TTGAATGAT--TGATAC--------------TTGATTGG--TAT---AATG-------ATTGATT-------GACA-AT--------TTC---TTGATTGA---AAACA------TTGAT----TGA---A--------T-AAT----G-A-------TT----G-ATTGAA--A--ACATTGATTGAA----T----TATTGATTG----ATTC---AAAT-----ACGGACTGACTGTTGA-TGCT-----A-AAGCA----------------GTC-GCTGAAGATCATTTCATTATACCGAGTACAATTCTGA---TAATGT-ATTT-ATGTAA----TG-CTGTCAGTTTTAATC--AGAAATGTT-----A--AATCAAGTAAAGCCATGACAAAGACTGCCAGTTTA--GTGTTGTTGTTCTGTTCTATTGAAATGATggaataattgct
gi|4 : gtagtctcgctgtcatggtgcgtaataaaatgtcagcttgtggcggatgtcttcatgtatgtacgcatttttcatacatacatgaagacatatgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncagtgattgattT---TGGATTGGTAT---A------TTGAATGAT--TGATAC-----TTG-----ATTGATTGG--TAT---AATG-------ATTGATT-------GA-CCAT--------TTC---TTGATTGA---AAACA------TTGAT----TGA---A--------T-CAG----G-A-------TT----G-ATTGAA--A--ACATTGATTGAA----T----TATTGATTG----ATTC---AAAT-----ACGGACTGACTGTTGA------------------TACTA-----AAACAGTC-GCTGTAGATCATTTCGTTATACCAAGTACAATTCTGA---TAATGTAATTACATGTATGTAATG-CTCTCAGTTTTAATCAGA--AATGCTAAATTA--AG-----TGAAGCCATGACAAAGACTGTCAGTTT--AGTGCTGTTGTTCTGTTCTATTGAAATGATaattccagcacttacaaccttaccctagtactgttgttttaattaggttttgcttgattataagccgaggttcaggattagttttaattatctcctcaaatgagtacattgaatactg
gi|2 : gtgtttagcaaaatgttgtaagcttgtggcgggnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatgaattgactggttgattggaacattaataaattgattcattagaactttg---TTGATTGAT-C---AGAAC-ATTGAA--------ATNNNNNNNNNN-----NNNNNNNNNNNNNNN--NNNNN------NNNNNNN-------NN-A-ACGTTT--TGTTGG-ATTGATCCACTGAAATA------TTTAT-GATTGA---T--------T-GAT----ATACCTTTGGTTGAGAT-ATTGATCGATTGA-TTGAC---A----T----T--TGATTG----ATTGATTGACTGAAATTTGGACTGATTGTTGAGTGTTGATACTACAGTATTACTA-C-CCAAA-AGTC-GTGGTAGATCATTG-ATTATATAAAATACAATGCTGAAAATAATGT-ATTG-ATATAA----AG-CTCTCAGTTTTGATT--A--AATGTT---TTA--AC--AAATAAAGCCATGGCAGAGACTGTCCATAT--AGTGTTGCTGTTCTGTTCTATTAATATAATaattccagcacgtataaccctaccctagtactgatgttttaattatgctttgcttgattataagccgaggttcaggattagtcttaattatctgctcaagtgagtacattgaaaactgg
gi|8 : tagcattgataatgcttaactcaagctgcaatttacatcacacatttcgcgcacgttagcaaattaccttcactaaccatgctacacttacgctacccaacactcgcattattacgtatgttgctaaaatggcaatacaatccagggtccgtcattcccgtaatgaattattatccaagcacacgaacaaactttcatcaatcagaccttaggcatatggcctaaggttcccgttcatccaacctcttcctccattattctttatgctacctgtcagacactcagatttaagcttttttaaagacattgattaagggagtactgtcattggttcgattcctaaaattcactctattattcattgcaattttgcaataataaaaatattccacaacttgttttatatatatacatgtactctccaggaaacaaatccttaacctcatttacaacatcacgcattggatgcctagttagtatcatcttgtctgatacttctcgggtttactcaacatagtccatgacatgctagaacatatacctaactatgcttctattcaatagcggtctttctgtcatggcgtttagcaaaatgctgtgtgcttgtggcggatgtcttcatgtatgtttgttaggtatacatgaagacatatggccgatatttacaaagcctgccacatattctatttccttccaggtctgttgacaatagttggacttatttaatcgacaattatcgatcgatatagagccatcgaaaatactgatacgcacaACTGAAATA------TTGAT-GATTAA---A--------T-GAT----ATA-------CC----T--TTGAT--A--AA---GAT---A---------T--TGATTG----ATTG---Gtaaagctctatcatctatacattaatatacctcacactatcatactatttcttttaaat
gi|12 : tTTC----ATTG---AATG-----ATGGTTTGATTGTTGA-TCTT-----G-CATCATTACTA-CTC-AAA-AGTCAGT-GTAGATCAtagatcattgcattatatctaatacaatgctgaagttaatgtattgatatattgctgtcagttttgatcaaaggttttaacaaatagaccgccaatatagtgttgctgttctgttctattgaaataa
gi|10 : gtGTATTGATA-CTC-AAA-CGTC-GTTGTAGATCATTTCATTATACTAAATACAATACTGATAATAATGT-ATTG-ATATAA----TGACTGTCCGTTTTAATCAGA--AATGTT---TTATTAA--GAGTAAAGCCATGACAAAGACTGCCAATAT--AGTGT---TGTTCTGTTcgcaatggattcaaacagtatttcagaacaacagtatgacaa
gi|8 : taatTGGTAGATCATTGCATTATATCTAATACAATGCTGAAGTTAATGT-ATTG-ATATAT----TG-CTGTCAGTTTTGATC--A--AAGGTT---TTA--AC--AAAT-------------AGACCGCCAATAT--AGTGTTGCTGTTCTGTTCTATTGAAATAA
gi|8 : tactgaaatattgatgattaaatgatatacctttgataaagatattgattgatAGCATTGTATTAGATATAATGCAATGATC
gi|18 : tactgaaatattgatgattaaatgatatacctttgataaagatattgattgattggtaATATAGTGTTGTCGTTCTGCTCTATTGAAATAATgaagttaatgtattgatatattgctgtcagttttgatcaaaggttttaacaaatagaccgccaatatagtgttgctgttctgttctattgaaataa
4 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|11 ): TACCGGATTCTGATTGATTGGTTACATACACACTGACAGATGATTGATTGATTGGTTACATACATACTGACAGATGATTGATTGATTGGTTACATACACACTGACAGATGCACGCCTGATTCTGATTGGTTGATTGGACGTTGTAC
Unaligned ( gi|15 ): GGAGCAATGTCATCGGGTCGATTCCTGAAATTCACACGATTATGTATGGGAAATTTGC
Unaligned ( gi|16 ): ATAACCTTTGATTGATTGATTGATTGATAACCTTTGATTGATTGATTGATT
Unaligned ( gi|17 ): CCATGATAAAGACTGTCAGTTTAGTGTTGTTATTCTG
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111 111111111111111111 1111111111111111111111111 111111111111111111
lowQualScore : 1 8888 11111 333333 2222 666666666666666666666666666666666666666666666666 22222 1 3333333333333 11 11 333333 000000000000000000 2222 1 1 7777777777777777777777777 1 55555 2 888888888 2222 1 2 1 33 3333333333 222222222222222222 11 5555555555 444444444444 3333 33 1111 11 22 22222222222 1 333 1 1 6666666 1 1 1 2222 11 111 22222222 6666666666666666666666 11 33333333333333 33333333333333 1 5555555555555555555555555555 55555555555555555555555555555555555555 22222 1111111111 222222222222222222 3333333333333333333333333333333 222222 11111 22222
lowQualScore : 5 6 6 5555 2 55555 888888 4444 1 999999999999999999999999999999999999999999999999 1 0 99999 2 6 1 55 1 3 0 2222222222222 00 1 88 666666 1 22 333333333333333333 2 2 6666 0 2 6 2 3 0 3 7777777777777777777777777 4 3 5 1 00000 3 3 0 4 000000000 999 2 1111 0 2 1 0 4 1 1 1 7 77 3 44 0 4 0 11 0 1 00 22 1 0 0 1 1 1 7777777777 1 888888888888888888 1 11 33 3333333333 22 22 1 0 000000000000 22 22 1 999 0000 1 00 6 4444 00 00 7 1 11 0 11 11111111111 6 2 3 4 3 3 2 4 5 000 0 0 44 4444444 66 77 0 2 3 0 0 2 3 0 3333 4 3 11 0 1 6 111 77 5 11111111 5 66666 77 1111111111111111111111 1 55 33333333333333 99 1 22222222222222 1 7777777777777777777777777777 1 4 77 3 88 1 4 66666666666666666666666666666666666666 0 00000 1 0 9999999999 0 555555555555555555 9999999999999999999999999999999 33 1 0 1 77 999999 5 44444 5 0 00000 77 1 0 66
lowQualScore : . . . .... . ..... ...... .... . ................................................ . . ..... . . . .. . . . ............. .. . .. ...... . .. .................. . . .... . . . . . . . ......................... . . . . ..... . . . . ......... ... . .... . . . . . . . . . .. . .. . . . .. . . .. .. . . . . . . .......... . .................. . .. .. .......... .. .. . . ............ .. .. . ... .... . .. . .... .. .. . . .. . .. ........... . . . . . . . . . ... . . .. ....... .. .. . . . . . . . . .... . . .. . . . ... .. . ........ . ..... .. ...................... . .. .............. .. . .............. . ............................ . . .. . .. . . ...................................... . ..... . . .......... . .................. ............................... .. . . . .. ...... . ..... . . ..... .. . . ..
lowQualScore : 0 0 0 0000 5 33333 333333 0000 0 000000000000000000000000000000000000000000000000 0 7 33333 0 0 0 77 0 7 7 0000000000000 00 0 33 777777 0 00 000000000000000000 5 5 5555 5 5 0 5 0 5 0 5555555555555555555555555 0 0 0 0 00000 0 0 0 0 000000000 555 0 2222 5 0 0 2 2 0 0 0 3 77 7 77 7 0 7 77 7 0 77 00 0 7 7 0 0 0 0000000000 0 777777777777777777 0 33 33 7777777777 00 00 0 7 777777777777 00 00 0 333 0000 0 77 7 3333 33 77 3 0 33 7 77 33333333333 7 5 0 0 0 0 5 0 0 000 0 5 55 2222222 00 00 0 5 2 0 0 0 2 2 2222 2 2 00 8 0 7 777 11 7 88888888 7 66666 99 7777777777777777777777 6 77 66666666666666 00 0 99999999999999 4 8888888888888888888888888888 0 4 22 0 11 4 0 00000000000000000000000000000000000000 8 00000 0 7 4444444444 8 999999999999999999 6666666666666666666666666666666 44 0 1 0 99 666666 7 33333 7 9 11111 99 0 1 11
consensus : NTATATACTTAGAAAATACACAAGATCCATACACTGATACC----AGTAAAANATCCACGTCACC-ATCATTC------TTCATATA---TTGAACCAGCT------------ACA-T-CGGC-ATAGTTAAGN---CTCAAC---AGCCGCAATTTAC----ATCACGCATTTCGCACAAGTTAGCGAATTANCTTCACTAATCATGCTACC-C--AATACGCAAGATCCATACACTGA--CACN--TGGTAGTAAAACATCCACATCACCTATCATTCTTCATATACTGAACCANCTTNCAGCTATTCT--ACCGCCAANTTCAGNCTCAGTTCNAGCNGCAATTCANATCACGCATTTCGCACAGGTTAGNAAATNACCTTCACTAANCATGCTNCCCCTGAAAATACGCTAGATCCATACACTGANANTAGCGAAANATCCACATCACCTGCCATTNTTCATATACNGAACCAGCTATCGGCTATTCTGCANGCACATAGTTCAGCCTCAACNCAAGCTGCAATTTA----CATCACGCATTTCGCACAGGTTAGCGAATTACCTTCACTAACCATACTACCCCTACGCTACCAAACACTCGCGTTATTACGAATGTTGCTAAAACGGCAAT-CAATCCAGGNNCCGTCATTACCCGTAACGAATTATTATCCAAGCACACGCACA--CTTTCGTCAATCAGACCGTAGGCATATGGCCTAAGGTTCCCGTTCATTCAACCTCTTCCTCCATTATTCTTTATGCTACCTGTCGGACACTCAGA---AAACC-TTTTNAA------GA--AGC---C-TCGATGAAGAAAGG-TA----GTAGC-CATCGCTTATATTTCTA--CTTGGC---AGTAAGCATNGGAGCAATT---CATTGCATT--TACAACAT-TTCCACAACTTGTTTTGCCAGGGCCTTA-TATATATATATATACTATCCAGGAAACAAATCCTT-GCCTCATTTAAAACACNACGCATTGGATGCCTAGTTGGTATCNTCTTGTCCGATACTTCCCGGGTTTACTCNACATAGTCCATGACATGCTAGNACATACNCCTGACTATNCNTCTATCCAACTGGCGGTCTT-C-TGTCACGGCGTTTAGCAAAA-TGTTGTNNGCTTGTGGCGGATGTCCTCATGTAT---CGC-TTTGTTANGCATACATGAAGACATATGGC-CGAATTTTGCT-AAG-CCTGCCACGTATTCTGTTTCCTTCC-AG-TCCGTGGAC--AATAATTGGNCTT-ATTTA---ATCGA-CA-ATTT---T--CGATCGATAT-AGAGCCATCG--AAT-A----T-A-----------T-GATACGCACATTGA--------------TTGATC-GGAACATCGA----------AAT-ATTGATTG---------------A-A-ATGTTG--TGTTNG-ATTGATCCACTGAAATATTGATGATTGAAT-GAT-------A---------------TA-------TT----TATTGA-----TTGATTG----A--TACTTGATTGATTG----G--A-NTA-----CGGACTGACTGTTGA-------TGCTACAGCATTACTAC-C-AAAAGTCGTTGTAGATCATTNCATTATACCNAATA--CAATGCTG--AA--TAATGTA-TTG-----ATATAATG-CTGTCAGTTTTGATC--A--AATGTTTTA--ACAAGTAAAGCCATGACAAAGACCGCCAATAT--AGTGTTGTTGTTCTGTTCTATTGAAATAAT
Reference ( family-792 ) : NTATATACTTACAAAATACACAAGATCCATACACTAACACCTGGTAGTAAAACATCCACATCACCTATCATTC------TTCATATA---CTGAATCATCT-----------TACA-TGCAGC-ATNGNTNANN---CTCAGCCCAAGCNGCAATTCAN----ATCACGCATTTCGCGCANGTTAGNAAATNACCTTCACTAACCATGCTACCNCTGAATACGCAAGATCCATACACTAA--CACC--TGGTAGTAAAACATCCACATCACCTATCATTCTTCATATACTGAACCANCTNNCGGCTATTCTCAAGCGCCAAGTTCAGCCTCAAC-CGAGCCGCAATTTACATCACGCATTTCGCGCAGGTTAGCAAATTACCTTCACTAACCATGCTACCT------ATACGC---ACCCA-ACACTGATAATAGTAAAANATCCATAT-----ATCATTATTTATATACTGAACCAGCTATCGGCTATTCT-CAAGCAC---------CCTCAACNCGAGCCGCAATTTA----CATCACGCATTTCGCGCANGTTAGCGAATTANCTTCACTAACCATACTACNCCTACGCTACCNAACACTCGCGTTATTACGNATGTTGCTAAAATGGCAATACAATCCAGGNCCCGTCATTNCCCGCAACGAATTATTACNCAAGCACACGNACAAACTTTCGTCAATCANNCCNTAGGCATATGGCCTAAGGTTCCCGTTCATCCANCCTCTTCCTCCATTATTCTTTATGCTACCTGTCNGACNCTCAGATTTAAGCCATTTTNAATCCATTGATTAGNATCCATCGATNAAGGGAGGGTANNNAGTAGCACATCGNNTNNANTCCTAANNTTCGCTCTANNANNCATNGGAGCAATT---CATTGCANTAATACAANATATTCCACAACTTGTTTTGCCAGGGCCTTA-TATANATACGTGTACTNCCCAGGAAACAAATCCTTAACCTCATTTACAACATCACGCATTGGATGCCTAGTTAGTATCATCTTGTCTGATACTTCTCGGGTTTACTCAACATAGTCCATGACATGCTAGAACATATACCTAACTATGCTTCTATTCAACTGGCGGTCTT-C-TGTCATGGCGTTTAGCAAAA-TGCTGTNAGCTTGTGGCGGATGTCTTCATGTAT----GCCTTTGTTANACATACATGAAGACATNCGGC-CGAATTTTGCT-AAG-CCTGCCACGTATTCTGTTTCCTTCC-AG-TCCGTGGAC--AATAATTGGNCTT-ATTTA---ATCGA-CA-ATTT---T--CGATCGATAT-AGAGCCATCG--AAT-A----T-A-----------T-GATACGCACATTGA--------------TTGATC-GGAACATCGA----------NAT-ATTGATTG---------------A-A-ATGTTG--TGTTNG-ATTGATCCACTGAAATATTGATGATTGAAT-GAT-------A---------------TA-------TT----TATTGA-----TNGATTG----A--TATTTGATTGATTG----G--A-NTA-----CGGACTGACTGTTGA-------TGCTACAGCATTACTAC-C-AAAAGTCGTTGTAGATCATTNCATTATACCNAATA--CAATGCTG--AA--TAATGTA-TTG-----ATATAATG-CTGTCAGTTTTAATC--A--AATGTTTTA--ANAAATAAAGCCATGACAAAGACCGCCAATAT--AGTGTTGTTGTTCTGTTCTATTGAAATAAT
gi|1 : TATATACTTAGAAAATACACAAGATCCATACACTGATACC----AGTAAAACATCCACATCACCTATCATTC------TTCATATAGTATTGAACCAGCTATCAGCTATTATACACTGTAGC-ATAGTTAAGT---CTCAAT---AGCTGCAATCCAC----ATCACACATTTTCCACAAGTTAGCAAATTACCTTCACTAATCATGCTACCACTGAATACGCAAATTCCATACACAGA--TACA------AGTAAAACATCCACATCATCTATCATTCTTTATATACTGAACCAGCTTTCAGCTATTCT--ACCGT--ATTTCAGACTCAATTCAAGCTGCAATTTACATCACACATTTCGCACAAGTTAGCAAATTACCTTCACTAAGCATGCTCCCCCTGAAAATACGCTAGATCCATACACTGATACTAGTAAAACATCCACATCACCTGCCATTCTTCATATACGGAACCAGCTATCGGCTATTCTGCATGTACATAGTTCAGCCTCAACG-AAGCTGCAATTTA----CATCACACAATTTGCACAGGTTAACAAATTACCTTCACTAATCATACTACCCCTACGCTACCAAACAC--GCGTTATTACGAATGTTGCTTAAACGGCAAT-CAATCTAGGCACCATCATTACCAGTAACGAATTGTTATCCAAGCACATGCACA--CTTTCGTCAATCAGACCGTAGGCTTATGGCCTAAGGTTCCTGTTCATTCAACCTCCTCCTCCATTACTCTTTATGCTATCTGTCGGACACTCAGA----AAC--TTTTCAA----------AGC-----TCGCTGAAGAAAAGTTA------AGCCCATCGCTTATATTTCTA--CTTGGC---AGTAAGCATAGGAACAATTATTCATTGCATT--TACAACATCTTCCACAACTTTTTTTGTCAGGGCCTTAATATATATATATATACTATCCAGGAAACA--------------TTTAAAACACAACGCATTGGATGCTTAGTTGGTATCCTCTTGTCCGATACTTCCCGGATTTACTCTACATAGTCCATGACATGTTAGCACATACCCTTGACTATCCATCTATCTAACTGGCAGTCTT-CCTGTCACGGCGTTTAGCAAAAATGTTGCCCGCTTGTGGCGGATGTCCTCATGTAT----G--TTTGTTAGGCATACATGAAGACATATGGC-CGAATTTTGCT-AAG-CCTTCCACATATTCTGTTTCCTTCCAAG-TCTGTGGAC--AATAATTGGACTT-ATTTA---ATCGA-CA-ATTT---T--CGATTGATAT-AGAGCCATCG--AAT-A----TAA-----------T-GATACGCATATTGG--------------TTGATC-GGAACATCAA----------TAT-ATTAATAG---------------A-A-ATGTTG--TGTTCG-ATTGATTCACTGAAATATTGATGATTGAAT-GAT-------A---------------TA-------TT----TATTGA-----TAGCTTG----A--CACTTGATTGATTG----G--A-TTT-----TGGACTGACTTTTGA-------TGTTTCAGCATTACTAC-C-AAAAGTCGTGGTAGAGCATTGCATTATATCTAACG--CAATGCTC--AAGTTAATGTA-TTG-----ATATATTG-CTGTCAGTTTTGATC--G--AATGTTTTA--AGAAATAAAGCCATGACAAAGACCGCCAATATACAGTGTCGCTGCTCTGTTCTATTGAAATAAT
gi|10 : tGTATTGATACTC-AAACGTCGTTGTAGATCATTTCATTATACTAAATA--CAATACTGATAA--TAATGTA-TTG-----ATATAATGACTGTCCGTTTTAATCAGA--AATGTTTTATTAAGAGTAAAGCCATGACAAAGACTGCCAATAT--AG---TGTTGTTCTGTT
gi|11 : taatTGATTG---------------A------TTG---GTTAC-AT--ACACACTGACA----GATGATTGATT-GATTGGTTACA---------------TA-------CA----TACTGA-----CAGAT-G----A--T---TGATTGATTG----GTTACATA-----CACACTGAC
gi|12 : taccggattcTTCATTG----A--A-TGA-----TGGTTTGATTGTTGA-------TCTTGCATCATTACTACTC-AAAAGTCAGTGTAGATCAagatgcacgcctgattctgattggttgattggacgttgtac
gi|13 : gt---CATTGCATT--TACAAC---TTCCACAACTTGTTTTGCCAGGGCCTT--TA-AAATATGTATACTACCCAGGAAACAAATCCTT-GCTTCATTTAAAACcgcaatggattcaaacagtatttcagaacaacagtatgacaa
gi|14 : ATTTAGC-C-AATTTTGCT-AAAACCTGCCTCATATTCTGTT--------------GTGGCC--AATAACTGGCTTTCATTTA---ATCAA-CACATT--------GATTGA
gi|17 : CCATGATAAAGACTGTCAGTTT--AGTGTTGTTATTCTG
gi|18 : AATAT--AGTGTTGTCGTTCTGCTCTATTGAAATAAT
gi|2 : CTTAACTCAAGCTGCAATTTA----CATCACACATTTCGCGCACGTTAGCAAATTACCTTCACTAACCATGCTACACTTACGCTACCCAACACTCGCATTATTACGTATGTTGCTAAAATGGCAATACAATCCAGGGTCCGTCATT-CCCGTAATGAATTATTATCCAAGCACACGAACAAACTTTCATCAATCAGACCTTAGGCATATGGCCTAAGGTTCCCGTTCATCCAACCTCTTCCTCCATTATTCTTTATGCTACCTGTCAGACACTCAGATTTAAGCTTTTTTAAA------GA--------CATTGATTAAGGGAG--TACT--GT----CATTGGTTCGATTCCTAAAATTCACTCTATTATTCATTG---CAATT-----TTGCAATAATA-AAAATATTCCACAACTTGTTTT-----------A-TATATATACATGTACTCTCCAGGAAACAAATCCTTAACCTCATTTACAACATCACGCATTGGATGCCTAGTTAGTATCATCTTGTCTGATACTTCTCGGGTTTACTCAACATAGTCCATGACATGCTAGAACATATACCTAACTATGCTTCTATTCAA-TAGCGGTCTTTC-TGTCATGGCGTTTAGCAAAA-TGCTGTGTGCTTGTGGCGGATGTCTTCATGTAT----G--TTTGTTAGGTATACATGAAGACATATGGC-CGATATTTACA-AAG-CCTGCCACATATTCTATTTCCTTCC-AGGTCTGTTGAC--AATAGTTGGACTT-ATTTA---ATCGA-CA-ATTA---T--CGATCGATAT-AGAGCCATCGAAAAT-ACTGAT-ACGCACATTGATT-GATCAGAACATTGAAATNNNNNNNNNNNNNNNNN-NNNNNNNNNN----------NNN-NNNNNNNN---------------N-A-ACGTTT--TGTTGG-ATTGATCCACTGAAATATTTATGATTGATT-GAT-------ATACCTTTGGTTGAGATA-------TT----GATCGA-----TTGATTG----A--CATTTGATTGATTGATT-G--A-CTGAAATTTGGACTGATTGTTGAGTGTTGATACTACAGTATTACTAC-CCAAAAGTCGTGGTAGATCATTG-ATTATATAAAATA--CAATGCTG--AAAATAATGTA-TTG-----ATATAAAG-CTCTCAGTTTTGATT--A--AATGTTTTA--ACAAATAAAGCCATGGCAGAGACTGTCCATAT--AGTGTTGCTGTTCTGTTCTATTAATATAAT
gi|3 : tagcattgataatgAATACACAAGATCCATACACTAA--CACC--TGGTAGTAAAACATCCACATCACCTATCATTCTTCATATACTGAATCATCTTAC----AT--------GCCAAGTTCAGCCTCAGT-CTAGCAGCAATTCAAATCACGCATTTCGCACAGGTTAGAAAATGACCTTTACTAATCATGCTACCC------------------------TTGAAAATA-CGAAAGATCCATAT-----ATCATTATTTATATACTGAACCAGCTATCGGCTATTCT-CAAGCAC---------CCTCAACATGAGCCGCAATTTA----CATCACGCATTTCGCACAGGTTATCTAATTAACGTCACTAATCACACtaaagctctatcatctatacattaatatacctcacactatcatactatttcttttaaat
gi|3 : tatatacttacaaAAAGATCCATAT-----ATCATTA------TTTATATA---CTGAACCAGCT--------------A-T-CGGCTATTCTCAAGCACCCTCAACATGAGCCGCAATTTAC----ATCACGCATTTCGCACAGGTTATCTAATTAACGTCACTAATC-------------ACACGCAAGATCCATACATTGAATCACTGATAATAGTAAAACgcaagatccatacattgaatcactgataatagtaaaactcaaactacaatttaattacatcaccatttcgcacaagtgggcgaattatcttcactaaccatactacccctacgctaccaaacactcgcgttattacaatgttgctaaaatggcaatcaatccaggtcccatcattacccgcaacgaattattacacaagcacatgcacactttcgtcaatcattccgtaggcatatggcctaagattcctgttcattcaccctcttccttcattattctttatgctacctgtctgactctcagaaaccattttgaatccattgattaatatcctcgatgaaaaaagggtaagcagtagcacatcacatataattctccttggcaggaagcatgggagcaat
gi|3 : tatatacttacaaaatacacaagatccatacactaacacctggtagtaaaacatccacatcacctatcattcttcatatactgaatcatcttacatgccaagttcagcctcagtctagcagcaattcaaatcacgcatttcgcacaggttagaaaatgacctttactaatcatgctacccttgaaaatacgACGTCACTAATCACACGCAAGATCCATACA---TTGAATCA-CT-----------GATA--------ATAG-TAAAA---CTCA-----AACTACAATTTAATTACATCAC-CATTTCGCACAAGTGGGCGAATTATCTTCACTAACCATACTACCCC----TACGCTA---CCAAACACTtcaaactacaatttaattacatcaccatttcgcacaagtgggcgaattatcttcactaaccatactacccctacgctaccaaacactcgcgttattacaatgttgctaaaatggcaatcaatccaggtcccatcattacccgcaacgaattattacacaagcacatgcacactttcgtcaatcattccgtaggcatatggcctaagattcctgttcattcaccctcttccttcattattctttatgctacctgtctgactctcagaaaccattttgaatccattgattaatatcctcgatgaaaaaagggtaagcagtagcacatcacatataattctccttggcaggaagcatgggagcaat
gi|3 : tatatacttacaaaatacacaagatccatacactaacacctggtagtaaaacatccacatcacctatcattcttcatatactgaatcatcttacatgccaagttcagcctcagtctagcagcaattcaaatcacgcatttcgcacaggttagaaaatgacctttactaatcatgctacccttgaaaatacgaaagatccatatatcattatttatatactgaaccagctatcggctattctcaagcaccctcaacatgagccgcaatttacatcacgcatttcgcacaggttatctaattaAACTCAAACTACAATTTAATTACATCAC-CATTTCGCACAAGTGGGCGAATTATCTTCACTAACCATACTACCCCTACGCTACCAAACACTCGCGTTATTAC-AATGTTGCTAAAATGGCAAT-CAATCCAGGTCCCATCATTACCCGCAACGAATTATTACACAAGCACATGCACA--CTTTCGTCAATCATTCCGTAGGCATATGGCCTAAGATTCCTGTTCATTCACCCTCTTCCTTCATTATTCTTTATGCTACCTGTCTGACTCTCAG----AAACCATTTTGAATCCATTGATTAATATCC-TCGATGAAAAAAGGGTAAGCAGTAGCACATCACATATAATTCT--CCTTGGC---AGGAAGCATGGGAGCAATcgcgttattacaatgttgctaaaatggcaatcaatccaggtcccatcattacccgcaacgaattattacacaagcacatgcacactttcgtcaatcattccgtaggcatatggcctaagattcctgttcattcaccctcttccttcattattctttatgctacctgtctgactctcagaaaccattttgaatccattgattaatatcctcgatgaaaaaagggtaagcagtagcacatcacatataattctccttggcaggaagcatgggagcaat
gi|4 : tatatacttacaaaatacacaagatccatacactaacacctggtagtaaaacatccacatcacctatcattcttcatatactgaatcatcttacatgccaagttcagcctcagtctagcagcaattcaaatcacgcatttcgcacaggttagaaaatgacctttactaatcatgctacccttgaaaatacgaaagatccatatatcattatttatatactgaaccagctatcggctattctcaagcaccctcaacatgagccgcaatttacatcacgcatttcgcacaggttatctaattaacgtcactaatcacacgcaagatccatacattgaatcactgataatagtaaGTGTTTAGCAAAA-TGTTGTAAGCTTGTGGCGG
gi|4 : TTGATTG---------------G-A-ACAT----TAATAA-ATTGATTCATTAGAACTTTGTTG---GATT-GGT-------A------------------------------TATTGA-----ATGATTG----A--TACTTGATTGATTG----G--T-ATA-----ATGATTGATTGgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatgaattgactggttgattggaacattaataaattgattcattagaactttgttggattggtatattgaatgattgatacttgattgattggtataatgattgattgaccatttcttgattgaaaacattgattgaatcaggattgattgaaaacattgattgaattattgattgattcaaatacggactgactgttgatactaaaacagtcgctgtagatcatttcgttataccaagtacaattctgataatgtaattacatgtatgtaatgctctcagttttaatcagaaatgctaaattaagtgaagccatgacaaagactgtcagtttagtgctgttgttctgttctattgaaatgataattccagcacgtataaccctaccctagtactgatgttttaattatgctttgcttgattataagccgaggttcaggattagtcttaattatctgctcaagtgagtacattgaaaactgg
gi|4 : gtgtttagcaaaatgttgtaagcttgtggcgggnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatgaattgactggT---T--GGATTGGTAT-A------TTG--AATGA----T-------------T-GATAC-----TTGA--------------TTGATT-GGTATA---------------ATGATTGATTG---------------A-CCAT-TT-----CTTG-ATTGA-------AAACATTGAT---TGAAT-CAG-------G----------------A-------TT----GATTGAAAACATTGATTG----AATTATT-GATTGATTC----A--A-ATA-----CGGACTGACTGTTGA-------TACTAAAACA--------------GTCGCTGTAGATCATTTCGTTATACCAAGTA--CAATTCTG--A---TAATGTAATTACATGTATGTAATG-CTCTCAGTTTTAATC--AGAAATGCTAAA--TTAAGTGAAGCCATGACAAAGACTGTCAGTTT--AGTGCTGTTGTTCTGTTCTATTGAAATGATaccatttcttgattgaaaacattgattgaatcaggattgattgaaaacattgattgaattattgattgattcaaatacggactgactgttgatactaaaacagtcgctgtagatcatttcgttataccaagtacaattctgataatgtaattacatgtatgtaatgctctcagttttaatcagaaatgctaaattaagtgaagccatgacaaagactgtcagtttagtgctgttgttctgttctattgaaatgataattccagcacgtataaccctaccctagtactgatgttttaattatgctttgcttgattataagccgaggttcaggattagtcttaattatctgctcaagtgagtacattgaaaactgg
gi|5 : gtgtttagcaaaatgttgtaagcttgtggcgggnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatgaattgactggttgattggaacattaataaattgattcattagaactttgGTCTCGC-TGTCATGGTGCGTAATAAAA-TG---TCAGCTTGTGGCGGATGTCTTCATGTATGTACGCATTTTTCATACATACATGAAGACATATGaattccagcacgtataaccctaccctagtactgatgttttaattatgctttgcttgattataagccgaggttcaggattagtcttaattatctgctcaagtgagtacattgaaaactgg
gi|5 : gtaA-CA-ACTTCGTT--GGATTGGTAT-A------TTG--AATGA----T-------------T-GATAC-----TTGA--------------TTGGT-------AT-------------AATGATTGATTG---------------ACA-AT-TT-----CTTG-ATTGA-------AAACATTGAT---TGAAT-AAT-------G----------------A-------TT----GATTGAAAACATTGATTG----AATTATT-GATTGATTC----A--A-ATA-----CGGACTGACTGTTGA-------TGCTAAAGCA--------------GTCGCTGAAGATCATTTCATTATACCGAGTA--CAATTCTG--A---TAATGTA-TTT-----ATGTAATG-CTGTCAGTTTTAATC--AGAAATGTTAAA--TCAAGTAAAGCCATGACAAAGACTGCCAGTTT--AGTGTTGTTGTTCTGTTCTATTGAAATGATnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncagtgattgattacaacttcgttggattggtatattgaatgattgatacttgattggtataatgattgattgacaatttcttgattgaaaacattgattgaataatgattgattgaaaacattgattgaattattgattgattcaaatacggactgactgttgatgctaaagcagtcgctgaagatcatttcattataccgagtacaattctgataatgtatttatgtaatgctgtcagttttaatcagaaatgttaaatcaagtaaagccatgacaaagactgccagtttagtgttgttgttctgttctattgaaatgataattccagcacttacaaccttaccctagtactgttgttttaattaggttttgcttgattataagccgaggttcaggattagttttaattatctcctcaaatgagtacattgaatactg
gi|6 : gtagtctcgctgtcatggtgcgtaataaaatgtcagcttgtggcggatgtcttcatgtatgtacgcatttttcatacatacatgaagacatatgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncagtgattgattAC--AATTATACGTCCT-TTTTG---AGCGC-CA--TTT---TGACGAACATTCT-AGAGACATCG--AAT-A----T-A-----------CCGATTCG-ACATTGA--------------TTGATC-GCAACATCGA----------AAG-ATTGATTGATTGATGATTTATTGA-A-ATATTG--TGTCGG-ATTGATCCACTGAAATATTGATGATTGATT-GAC-------A---------------TACCCTTGATTGAAATATTGA-----TTGATTGCTTGA--CACTTGATTGATTGATTGG--A-TTT-----TGGACTGACTGTTGA-------T-----------ACTAC---------------AG--CATTAC----TGCCCAAAAGTCGTTG-TA--GA--TAATGTA-TTG-----ATATAATA-CCGTCAG------------------TTTA--ACAAATAAAGCCATGACAAAGACCGCCAATAT--TGTGaattccagcacttacaaccttaccctagtactgttgttttaattaggttttgcttgattataagccgaggttcaggattagttttaattatctcctcaaatgagtacattgaatactg
gi|7 : aTGGCGGATGTCCGTATGTATCATCACTTTTGTTATTCACACATGAAGACACATGGCGCGAATTT-GCTTAAG-CCTGCCATGGATTTTGTTTCTTTCC-AGTTCCG-GGACCGAA-AATTAGCTTT-ATCCATGCATTG---A-AT---------GATTGACAT-AGATTAATTC--AA-----------------------------CACATTGA--------------TTGATTAAAAACGTTGATTTAGACATTCAT-ATTGATTG---------------A------TTGATTGTTAT-ATTGATTTACTGAAGAATT-AT--TTGAAT-AAT-------T---------------GG-------TT----TATAAA-----TTGATTG----------TTGAT
gi|8 : aACTGAAATATTGATGATTAAAT-GAT-------A---------------TA-------CC----T-TTGA-----TAAA--G----A--TA-TTGATTGATTG----G--gttgc
gi|8 : tGTAGATCATTGCATTATATCTAATA--CAATGCTG--AAGTTAATGTA-TTG-----ATATATTG-CTGTCAGTTTTGATC--A--AAGGTTTTA--ACAAAT-------------AGACCGCCAATAT--AGTGTTGCTGTTCTGTTCTATTGAAATAAtagatcattgcattatatctaatacaatgctgaagttaatgtattgatatattgctgtcagttttgatcaaaggttttaacaaatagaccgccaatatagtgttgctgttctgttctattgaaataa
gi|9 : tactgaaatattgatgattaaatgatatacctttgataaagatattgattgattgTCGGGCTT-ATTTA---GTTGAACC-ATTA---T--CGATCGATATTAGAGCCATCG---AT-A----TAA-----------T-GATACGCACATTGA--------------TTGATC-GGAATATCGA----------AAT-ATTGATTG-----------------A-TTGTTAT-TGTTCGAATTGGTCCACTG-AATATTGATGATTGAATCAAT-------A---------------TA-------CC----T-TTGA-----TTGAGGA----A--TAATTG
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|15 ): GGAGCAATGTCATCGGGTCGATTCCTGAAATTCACACGATTATGTATGGGAAATTTGC
Unaligned ( gi|16 ): ATAACCTTTGATTGATTGATTGATTGATAACCTTTGATTGATTGATTGATT
Alignments
lowQualScore : 111111111111111111111111 1111111111111111111111111
lowQualScore : 2222222 333333 222 222222222222222222222222 1 2222 33333 2222 1 3333333333333 11 11 333333 444444444444444 1 0000000000000000000000000 22222 1 333333333 2222 1 1 11 22222222 99999999999999999 7777777777777777 11 222 222 11 3333 11 22 1111 1 4 1 7777777777 1 1 1 2222 11 111 22222222 6666666666666666666666 11 33333333333333 11111 33333333333333 1 6666666666666666666666666666 55555555555555555555555555555555555555 22222 2222222222 22222222222222222 3333333333333333333333333333333 33333 11111 22
lowQualScore : 1 0 5555555 888888 333 6 666666666666666666666666 2 4444 44444 0 8888 2 3 1 7777777777777 00 88 444444 1 1 444444444444444 1 1 5 1 1 1 1 1 1 1 8888888888888888888888888 1 66666 1 1 5 1 888888888 77 1111 0 0 0 4 0 7 6 0 3 22 0 7 0 88 0 3 77777777 1 11111111111111111 0000000000000000 88 333 1 999 333 6 88 9999 00 00 7 6 9999 1 1 1 1 1 1 1 5 0 0 0 3 222 6666666666 11 0 2 3 0 0 2 3 0 3333 4 3 11 0 1 6 111 77 5 11111111 5 66666 77 1111111111111111111111 1 55 33333333333333 00000 33333333333333 1 0000000000000000000000000000 1 5 88 2 6 4 33333333333333333333333333333333333333 1 22222 0 8888888888 99999999999999999 9999999999999999999999999999999 33 1 0 1 77 66666 5 44444 5 0 33 33 77 0 66
lowQualScore : . . ....... ...... ... . ........................ . .... ..... . .... . . . ............. .. .. ...... . . ............... . . . . . . . . . . ......................... . ..... . . . . ......... .. .... . . . . . . . . . .. . . . .. . . ........ . ................. ................ .. ... . ... ... . .. .... .. .. . . .... . . . . . . . . . . . . ... .......... .. . . . . . . . . .... . . .. . . . ... .. . ........ . ..... .. ...................... . .. .............. ..... .............. . ............................ . . .. . . . ...................................... . ..... . .......... ................. ............................... .. . . . .. ..... . ..... . . .. .. .. . ..
lowQualScore : 0 7 3333333 333333 333 7 333333333333333333333333 3 3333 33333 7 3333 0 7 0 7777777777777 00 33 000000 0 0 555555555555555 0 0 5 0 0 0 0 0 0 0 5555555555555555555555555 0 00000 0 0 0 0 000000000 55 2222 5 2 2 2 2 3 7 7 3 00 7 3 7 33 7 7 77777777 0 33333333333333333 3333333333333333 33 333 0 333 333 7 33 7777 33 77 3 7 0000 0 0 0 0 0 0 0 0 0 7 0 2 888 8888888888 22 0 5 2 0 0 0 2 2 2222 2 2 00 8 0 7 777 11 7 88888888 7 66666 99 7777777777777777777777 6 77 66666666666666 33333 11111111111111 4 4444444444444444444444444444 0 0 55 7 7 4 00000000000000000000000000000000000000 0 22222 8 9999999999 22222222222222222 6666666666666666666666666666666 44 0 1 0 99 44444 7 33333 7 4 66 77 99 1 11
consensus : NTATATACTTAGAAAATACACAAGATCCATACACTGATACCAGTAAAANATCCACGTCACC-A-TCATTC------TTCATATA---TTGAACCAGCT-A------------CACCG--GC-ATAGTCAAGN---CTCAACA---GCCGCAATTTA----CATCACGCATTTCGCACAAGTTAGCGAATTANCTTCACTAATCATGCTACC-C--AATACGCAAGATCCATACACTGA--CAC--ATGGTAGTAAAACATCCACATCACCTATCATTCTTCATATACTGAACCANCTTNCAGCTATTCTACCGCCAANTTCAGNCTCAGTTCNAGCNGCAATTCANATCACGCATTTCGCACAGGTTAGNAAATNACCTTCACTAANCATGCTNCCCCTGAAAATACGCTAGATCCATACACTGATACTAGTAAAANATCCACATCACCTGCCATTNTTCATATACNGAACCAGCTATCGGCTATTCTGCANGCACATAGTTCAGCCTCAACNCAAGCTGCAATTTA----CATCACGCATTTCGCACAGGTTAGCGAATTACCTTCACTAACCATACTACCCCTACGCTACCAAACACTCGCGTTATTACGAATGTTGCTAAAACGGCAAT-CAATCCAGGNNCCGTCATTACCCGTAACGAATTATTATCCAAGCACACGCACA--CTTTCGTCAATCAGACCGTAGGCATATGGCCTAAGGTTCCCGTTCATTCAACCTCTTCCTCCATTATTCTTTATGCTACCTGTCGGACACTCAGA---AA-CNTTTTNAA------GA-----A-CCTCGATGAAGAAAG-----GT--AGC-GC-CATCGCTTATATTTCTAC--TTGGC---AGTAAGCATNGGAGCA---ATTCATTGCATT--TACAACAT-TTCCACAACTTGTTTTGCCAGGGCCTT-ATATATATATATATACTATCCAGGAAACAAATCCTTG-CCTCATTTAAAACACNACGCATTGGATGCCTAGTTGGTATCNTCTTGTCCGATACTTCCCGGGTTTACTCNACATAGTCCATGACATGCTAGNACATACNCCTGACTATNCNTCTATCCAACTGGCGGTCTTNCTGTCACGGCGTTTAGC-AAAATGTTGTNNGCTTGTGGCGGATGTCCTCATGTAT---CGC----TTTGTTANGCATACATGAAGACATATGGC-CGAATTTTGCT-AAG-CCTGCCACGTATTCTGTTTCCTTCC-AG-TCCGTGGAC--AATAATTGGNCTT-ATTTA---ATCGA-CA-ATTT---T--CGATCGATAT-AGAGCCATCG--AAT-A----T-A-----------T-GATACGCACATTGA--------------TTGATC-GGAACATCGA---A-------AT-ATTGATTG---------------A-A-ATGTTG--TGTTNG-ATTGATCCACTGAAATATTGATGATTGAAT-GAT-----A---------------TA-------TT----TATTGA-----TTGATTG----A--TA-TTGATTGATTG----G--A-NTA-----CGGACTGACTGTTGA-------TGCTACAGCATTACTAC-C-AAAAGTCGTTGTAGATCATTNCATTATACCNAATA--CAATGCTGA--A--TAATGTA-TTG-----ATATAATG-CTGTCAGTTTTGATCAGAAATGTTTTA--ACAAGTAAAGCCATGACAAAGACCGCCAATAT--AGTGTTGTTGTTCTGTTCTATTGAAATAAT
Reference ( family-792 ) : NTATATACTTAGAAAATACACAAGATCCATACACTGATACCAGTAAAANATCCACGTCACC-A-TCATTC------TTCATATA---TTGAACCAGCT-A------------CATCG--GC-ATAGTTAAGN---CTCAACA---GCCGCAATTTA----CATCACGCATTTCGCACAAGTTAGCGAATTANCTTCACTAATCATGCTACC-C--AATACGCAAGATCCATACACTGA--CAC--NTGGTAGTAAAACATCCACATCACCTATCATTCTTCATATACTGAACCANCTTNCAGCTATTCTACCGCCAANTTCAGNCTCAGTTCNAGCNGCAATTCANATCACGCATTTCGCACAGGTTAGNAAATNACCTTCACTAANCATGCTNCCCCTGAAAATACGCTAGATCCATACACTGANANTAGCGAAANATCCACATCACCTGCCATTNTTCATATACNGAACCAGCTATCGGCTATTCTGCANGCACATAGTTCAGCCTCAACNCAAGCTGCAATTTA----CATCACGCATTTCGCACAGGTTAGCGAATTACCTTCACTAACCATACTACCCCTACGCTACCAAACACTCGCGTTATTACGAATGTTGCTAAAACGGCAAT-CAATCCAGGNNCCGTCATTACCCGTAACGAATTATTATCCAAGCACACGCACA--CTTTCGTCAATCAGACCGTAGGCATATGGCCTAAGGTTCCCGTTCATTCAACCTCTTCCTCCATTATTCTTTATGCTACCTGTCGGACACTCAGA---AAACCTTTTNAA------GA-----AGCCTCGATGAAGAAAG-----GT--AGTAGC-CATCGCTTATATTTCTAC--TTGGC---AGTAAGCATNGGAGCA---ATTCATTGCATT--TACAACAT-TTCCACAACTTGTTTTGCCAGGGCCTT-ATATATATATATATACTATCCAGGAAACAAATCCTTG-CCTCATTTAAAACACNACGCATTGGATGCCTAGTTGGTATCNTCTTGTCCGATACTTCCCGGGTTTACTCNACATAGTCCATGACATGCTAGNACATACNCCTGACTATNCNTCTATCCAACTGGCGGTCTT-CTGTCACGGCGTTTAGC-AAAATGTTGTNNGCTTGTGGCGGATGTCCTCATGTAT---CGC----TTTGTTANGCATACATGAAGACATATGGC-CGAATTTTGCT-AAG-CCTGCCACGTATTCTGTTTCCTTCC-AG-TCCGTGGAC--AATAATTGGNCTT-ATTTA---ATCGA-CA-ATTT---T--CGATCGATAT-AGAGCCATCG--AAT-A----T-A-----------T-GATACGCACATTGA--------------TTGATC-GGAACATCGA---A-------AT-ATTGATTG---------------A-A-ATGTTG--TGTTNG-ATTGATCCACTGAAATATTGATGATTGAAT-GAT-----A---------------TA-------TT----TATTGA-----TTGATTG----A--TACTTGATTGATTG----G--A-NTA-----CGGACTGACTGTTGA-------TGCTACAGCATTACTAC-C-AAAAGTCGTTGTAGATCATTNCATTATACCNAATA--CAATGCTGA--A--TAATGTA-TTG-----ATATAATG-CTGTCAGTTTTGATCA--AATGTTTTA--ACAAGTAAAGCCATGACAAAGACCGCCAATAT--AGTGTTGTTGTTCTGTTCTATTGAAATAAT
gi|1 : TATATACTTAGAAAATACACAAGATCCATACACTGATACCAGTAAAACATCCACATCACCTA-TCATTC------TTCATATAGTATTGAACCAGCT-ATCAGCTATTATACACTGTAGC-ATAGTTAAGT---CTCAATA---GCTGCAATCCA----CATCACACATTTTCCACAAGTTAGCAAATTACCTTCACTAATCATGCTACCACTGAATACGCAAATTCCATACACAGA--TAC--A----AGTAAAACATCCACATCATCTATCATTCTTTATATACTGAACCAGCTTTCAGCTATTCTACCGT--ATTTCAGACTCAATTCAAGCTGCAATTTACATCACACATTTCGCACAAGTTAGCAAATTACCTTCACTAAGCATGCTCCCCCTGAAAATACGCTAGATCCATACACTGATACTAGTAAAACATCCACATCACCTGCCATTCTTCATATACGGAACCAGCTATCGGCTATTCTGCATGTACATAGTTCAGCCTCAACG-AAGCTGCAATTTA----CATCACACAATTTGCACAGGTTAACAAATTACCTTCACTAATCATACTACCCCTACGCTACCAAACAC--GCGTTATTACGAATGTTGCTTAAACGGCAAT-CAATCTAGGCACCATCATTACCAGTAACGAATTGTTATCCAAGCACATGCACA--CTTTCGTCAATCAGACCGTAGGCTTATGGCCTAAGGTTCCTGTTCATTCAACCTCCTCCTCCATTACTCTTTATGCTATCTGTCGGACACTCAGA---AA--CTTTTCA--------A-----AG-CTCGCTGAAGAAAA-----GTTAAGC--C-CATCGCTTATATTTCTAC--TTGGC---AGTAAGCATAGGAACAATTATTCATTGCATT--TACAACATCTTCCACAACTTTTTTTGTCAGGGCCTTAATATATATATATATACTATCCAGGAAA--------------CATTTAAAACACAACGCATTGGATGCTTAGTTGGTATCCTCTTGTCCGATACTTCCCGGATTTACTCTACATAGTCCATGACATGTTAGCACATACCCTTGACTATCCATCTATCTAACTGGCAGTCTTCCTGTCACGGCGTTTAGCAAAAATGTTGCCCGCTTGTGGCGGATGTCCTCATGTAT----G-----TTTGTTAGGCATACATGAAGACATATGGC-CGAATTTTGCT-AAG-CCTTCCACATATTCTGTTTCCTTCCAAG-TCTGTGGAC--AATAATTGGACTT-ATTTA---ATCGA-CA-ATTT---T--CGATTGATAT-AGAGCCATCG--AAT-A----TAA-----------T-GATACGCATATTGG--------------TTGATC-GGAACATCAA---T-------AT-ATTAATAG---------------A-A-ATGTTG--TGTTCG-ATTGATTCACTGAAATATTGATGATTGAAT-GAT-----A---------------TA-------TT----TATTGA-----TAGCTTG----A--CACTTGATTGATTG----G--A-TTT-----TGGACTGACTTTTGA-------TGTTTCAGCATTACTAC-C-AAAAGTCGTGGTAGAGCATTGCATTATATCTAACG--CAATGCTCA--AGTTAATGTA-TTG-----ATATATTG-CTGTCAGTTTTGATCG--AATGTTTTA--AGAAATAAAGCCATGACAAAGACCGCCAATATACAGTGTCGCTGCTCTGTTCTATTGAAATAAT
gi|10 : tGTATTGATACTC-AAACGTCGTTGTAGATCATTTCATTATACTAAATA--CAATACTGATAA--TAATGTA-TTG-----ATATAATGACTGTCCGTTTTAATCAGAAATGTTTTATTAAGAGTAAAGCCATGACAAAGACTGCCAATAT--AG---TGTTGTTCTGTT
gi|11 : taatTGATTG---------------A------TTG---GTTAC-AT--ACACACTGACA----GATGATTGATT-GATTGGTTA---------------CA-------TA----CAT--A-----CTGACAG----A--TGATTGATTGATTG----GTTACATA-----CACACTGAC
gi|12 : taccggattcTTCATTG----A--A-TGA-----TGGTTTGATTGTTGA-------TCTTGCATCATTACTACTC-AAAAGTCAGTGTAGATCAagatgcacgcctgattctgattggttgattggacgttgtac
gi|13 : gtCATTGCATT--TACAAC---TTCCACAACTTGTTTTGCCAGGGCCTT--TAAA-ATATGTATACTACCCAGGAAACAAATCCTTG-CTTCATTTAAAACcgcaatggattcaaacagtatttcagaacaacagtatgacaa
gi|14 : ATTTAGC-C-AATTTTGCT-AAAACCTGCCTCATATTCTGTT--------------GTGGCC--AATAACTGGCTTTCATTTA---ATCAA-CACATT--------GATTGA
gi|17 : CCATGATAAAGACTGTCAGTTT--AGTGTTGTTATTCTG
gi|18 : AATAT--AGTGTTGTCGTTCTGCTCTATTGAAATAAT
gi|2 : CTTAACTCAAGCTGCAATTTA----CATCACACATTTCGCGCACGTTAGCAAATTACCTTCACTAACCATGCTACACTTACGCTACCCAACACTCGCATTATTACGTATGTTGCTAAAATGGCAATACAATCCAGGGTCCGTCATT-CCCGTAATGAATTATTATCCAAGCACACGAACAAACTTTCATCAATCAGACCTTAGGCATATGGCCTAAGGTTCCCGTTCATCCAACCTCTTCCTCCATTATTCTTTATGCTACCTGTCAGACACTCAGATTTAAGCTTTTTTAA------AG-----A-CATTGATTAAGGGAG------T--ACT-GT-CATTGGTTCGATTCCTAAAATTCACTCTATTATTCATTG---CA---ATT--TTGCAATAATAAAA-ATATTCCACAACTTGTTTT------------ATATATATACATGTACTCTCCAGGAAACAAATCCTTAACCTCATTTACAACATCACGCATTGGATGCCTAGTTAGTATCATCTTGTCTGATACTTCTCGGGTTTACTCAACATAGTCCATGACATGCTAGAACATATACCTAACTATGCTTCTATTCAA-TAGCGGTCTTTCTGTCATGGCGTTTAGC-AAAATGCTGTGTGCTTGTGGCGGATGTCTTCATGTAT----G-----TTTGTTAGGTATACATGAAGACATATGGC-CGATATTTACA-AAG-CCTGCCACATATTCTATTTCCTTCC-AGGTCTGTTGAC--AATAGTTGGACTT-ATTTA---ATCGA-CA-ATTA---T--CGATCGATAT-AGAGCCATCGAAAAT-ACTGAT-ACGCACATTGATT-GATCAGAACATTGAAATNNNNNNNNNNNNNNNNN-NNNNNNNNNN---N-------NN-NNNNNNNN---------------N-A-ACGTTT--TGTTGG-ATTGATCCACTGAAATATTTATGATTGATT-GAT-----ATACCTTTGGTTGAGATA-------TT----GATCGA-----TTGATTG----A--CATTTGATTGATTGATT-G--A-CTGAAATTTGGACTGATTGTTGAGTGTTGATACTACAGTATTACTAC-CCAAAAGTCGTGGTAGATCATTG-ATTATATAAAATA--CAATGCTGA--AAATAATGTA-TTG-----ATATAAAG-CTCTCAGTTTTGATTA--AATGTTTTA--ACAAATAAAGCCATGGCAGAGACTGTCCATAT--AGTGTTGCTGTTCTGTTCTATTAATATAAT
gi|3 : tagcattgataatg--AATACACAAGATCCATACACTAA--CAC--CTGGTAGTAAAACATCCACATCACCTATCATTCTTCATATACTGAATCATCTTACA----------TGCCAAGTTCAGCCTCAGT-CTAGCAGCAATTCAAATCACGCATTTCGCACAGGTTAGAAAATGACCTTTACTAATCATGCTACCCTTGAAAATACG-------------------------AAAGATCCATAT-----ATCATTATTTATATACTGAACCAGCTATCGGCTATTCT-CAAGCAC---------CCTCAACATGAGCCGCAATTTA----CATCACGCATTTCGCACAGGTTATCTAATTAACGTCACTAATCACACtaaagctctatcatctatacattaatatacctcacactatcatactatttcttttaaat
gi|3 : tatatacttacaaAAAGATCCATAT-----A-TCATTA------TTTATATA---CTGAACCAGCT-A--------------TCG--GCTATTCTCAAGCACCCTCAACATGAGCCGCAATTTA----CATCACGCATTTCGCACAGGTTATCTAATTAACGTCACTAATC-------------ACACGCAAGATCCATACATTGAATCACTGATAATAGTAAAACgcaagatccatacattgaatcactgataatagtaaaactcaaactacaatttaattacatcaccatttcgcacaagtgggcgaattatcttcactaaccatactacccctacgctaccaaacactcgcgttattacaatgttgctaaaatggcaatcaatccaggtcccatcattacccgcaacgaattattacacaagcacatgcacactttcgtcaatcattccgtaggcatatggcctaagattcctgttcattcaccctcttccttcattattctttatgctacctgtctgactctcagaaaccattttgaatccattgattaatatcctcgatgaaaaaagggtaagcagtagcacatcacatataattctccttggcaggaagcatgggagcaat
gi|3 : tatatacttacaaaatacacaagatccatacactaacacctggtagtaaaacatccacatcacctatcattcttcatatactgaatcatcttacatgccaagttcagcctcagtctagcagcaattcaaatcacgcatttcgcacaggttagaaaatgacctttactaatcatgctacccttgaaaatacgACGTCACT-AATCACACGCAAGATCCATACA---TTGAATCA-CTGA------------TA--------ATAGT-AAAA---CTCAA-----ACTACAATTTAATTACATCAC-CATTTCGCACAAGTGGGCGAATTATCTTCACTAACCATACTACC-C---CTACGCTA---CCAAACACTtcaaactacaatttaattacatcaccatttcgcacaagtgggcgaattatcttcactaaccatactacccctacgctaccaaacactcgcgttattacaatgttgctaaaatggcaatcaatccaggtcccatcattacccgcaacgaattattacacaagcacatgcacactttcgtcaatcattccgtaggcatatggcctaagattcctgttcattcaccctcttccttcattattctttatgctacctgtctgactctcagaaaccattttgaatccattgattaatatcctcgatgaaaaaagggtaagcagtagcacatcacatataattctccttggcaggaagcatgggagcaat
gi|3 : tatatacttacaaaatacacaagatccatacactaacacctggtagtaaaacatccacatcacctatcattcttcatatactgaatcatcttacatgccaagttcagcctcagtctagcagcaattcaaatcacgcatttcgcacaggttagaaaatgacctttactaatcatgctacccttgaaaatacgaaagatccatatatcattatttatatactgaaccagctatcggctattctcaagcaccctcaacatgagccgcaatttacatcacgcatttcgcacaggttatctaattaAACTCAAACTACAATTTAATTACATCAC-CATTTCGCACAAGTGGGCGAATTATCTTCACTAACCATACTACCCCTACGCTACCAAACACTCGCGTTATTAC-AATGTTGCTAAAATGGCAAT-CAATCCAGGTCCCATCATTACCCGCAACGAATTATTACACAAGCACATGCACA--CTTTCGTCAATCATTCCGTAGGCATATGGCCTAAGATTCCTGTTCATTCACCCTCTTCCTTCATTATTCTTTATGCTACCTGTCTGACTCTCAGA---AACCATTTTGAATCCATTGATTAATATCCTCGATGAAAAAAGGGTAAGC--AGTAGCACATCACATATAATTCTCC--TTGGC---AGGAAGCATGGGAGCA---ATcgcgttattacaatgttgctaaaatggcaatcaatccaggtcccatcattacccgcaacgaattattacacaagcacatgcacactttcgtcaatcattccgtaggcatatggcctaagattcctgttcattcaccctcttccttcattattctttatgctacctgtctgactctcagaaaccattttgaatccattgattaatatcctcgatgaaaaaagggtaagcagtagcacatcacatataattctccttggcaggaagcatgggagcaat
gi|4 : tatatacttacaaaatacacaagatccatacactaacacctggtagtaaaacatccacatcacctatcattcttcatatactgaatcatcttacatgccaagttcagcctcagtctagcagcaattcaaatcacgcatttcgcacaggttagaaaatgacctttactaatcatgctacccttgaaaatacgaaagatccatatatcattatttatatactgaaccagctatcggctattctcaagcaccctcaacatgagccgcaatttacatcacgcatttcgcacaggttatctaattaacgtcactaatcacacgcaagatccatacattgaatcactgataatagtaaGTGTTTAGC-AAAATGTTGTAAGCTTGTGGCGG
gi|4 : T---T--GGATTGGTAT-A------TTG--AATGA----T-------------T-GATAC-----TTGA--------------TTGATT-GG--TAT------A-------ATGATTGATTG---------------A-CCAT-TT-----CTTG-ATTGA-------AAACATTGAT---TGAAT-CAG-----G----------------A-------TT----GATTGAAAACATTGATTG----AATTA-TTGATTGATTC----A--A-ATA-----CGGACTGACTGTTGA-------TACTAAAACA--------------GTCGCTGTAGATCATTTCGTTATACCAAGTA--CAATTCTGA-----TAATGTAATTACATGTATGTAATG-CTCTCAGTTTTAATCAGAAATGCTAAA--TTAAGTGAAGCCATGACAAAGACTGTCAGTTT--AGTGCTGTTGTTCTGTTCTATTGAAATGATgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatgaattgactggttgattggaacattaataaattgattcattagaactttgttggattggtatattgaatgattgatacttgattgattggtataatgattgattgaccatttcttgattgaaaacattgattgaatcaggattgattgaaaacattgattgaattattgattgattcaaatacggactgactgttgatactaaaacagtcgctgtagatcatttcgttataccaagtacaattctgataatgtaattacatgtatgtaatgctctcagttttaatcagaaatgctaaattaagtgaagccatgacaaagactgtcagtttagtgctgttgttctgttctattgaaatgataattccagcacgtataaccctaccctagtactgatgttttaattatgctttgcttgattataagccgaggttcaggattagtcttaattatctgctcaagtgagtacattgaaaactgg
gi|5 : gtgtttagcaaaatgttgtaagcttgtggcgggnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatgaattgactggttgattggaacattaataaattgattcattagaactttgGTCTCGCTGTCATGGTGCGTAAT-AAAATGT---CAGCTTGTGGCGGATGTCTTCATGTATGTACGCA---TTTTTCATACATACATGAAGACATATGaattccagcacgtataaccctaccctagtactgatgttttaattatgctttgcttgattataagccgaggttcaggattagtcttaattatctgctcaagtgagtacattgaaaactgg
gi|5 : gtaA-CA-ACTTCGTT--GGATTGGTAT-A------TTG--AATGA----T-------------T-GATAC-----TTGA--------------TTGGT-------AT------A-------ATGATTGATTG---------------ACA-AT-TT-----CTTG-ATTGA-------AAACATTGAT---TGAAT-AAT-----G----------------A-------TT----GATTGAAAACATTGATTG----AATTA-TTGATTGATTC----A--A-ATA-----CGGACTGACTGTTGA-------TGCTAAAGCA--------------GTCGCTGAAGATCATTTCATTATACCGAGTA--CAATTCTGA-----TAATGTA-TTT-----ATGTAATG-CTGTCAGTTTTAATCAGAAATGTTAAA--TCAAGTAAAGCCATGACAAAGACTGCCAGTTT--AGTGTTGTTGTTCTGTTCTATTGAAATGATnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncagtgattgattacaacttcgttggattggtatattgaatgattgatacttgattggtataatgattgattgacaatttcttgattgaaaacattgattgaataatgattgattgaaaacattgattgaattattgattgattcaaatacggactgactgttgatgctaaagcagtcgctgaagatcatttcattataccgagtacaattctgataatgtatttatgtaatgctgtcagttttaatcagaaatgttaaatcaagtaaagccatgacaaagactgccagtttagtgttgttgttctgttctattgaaatgataattccagcacttacaaccttaccctagtactgttgttttaattaggttttgcttgattataagccgaggttcaggattagttttaattatctcctcaaatgagtacattgaatactg
gi|6 : gtagtctcgctgtcatggtgcgtaataaaatgtcagcttgtggcggatgtcttcatgtatgtacgcatttttcatacatacatgaagacatatgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncagtgattgattAC--AATTATACGTCCT-TTTTG---AGCGC-CA--TTT---TGACGAACATTCT-AGAGACATCG--AAT-A----T-A-----------CCGATTCG-ACATTGA--------------TTGATC-GCAACATCGA---A-------AG-ATTGATTGATTGATGATTTATTGA-A-ATATTG--TGTCGG-ATTGATCCACTGAAATATTGATGATTGATT-GAC-----A---------------TACCCTTGATTGAAATATTGA-----TTGATTGCTTGA--CACTTGATTGATTGATTGG--A-TTT-----TGGACTGACTGTTGA-------T-----------ACTAC---------------AG--CATTAC----TGCCCAAAAGTCGTTG-TAG--A--TAATGTA-TTG-----ATATAATA-CCGTCAGTTT----------------A--ACAAATAAAGCCATGACAAAGACCGCCAATAT--TGTGaattccagcacttacaaccttaccctagtactgttgttttaattaggttttgcttgattataagccgaggttcaggattagttttaattatctcctcaaatgagtacattgaatactg
gi|7 : aTGGCGGATGTCCGTATGTAT---CATCACTTTTGTTATTCACACATGAAGACACATGGCGCGAATTT-GCTTAAG-CCTGCCATGGATTTTGTTTCTTTCC-AGTTCCG-GGACCGAA-AATTAGCTTT-ATCCATGCATTG---A-AT---------GATTGACAT-AGATTAATTC--AA-----------------------------CACATTGA--------------TTGATTAAAAACGTTGATTTAGACATTCAT-ATTGATTG---------------A------TTGATTGTTAT-ATTGATTTACTGAAGAATT-AT--TTGAAT-AAT-----T---------------GG-------TT----TATAAA-----TTGATTG----------TTGAT
gi|8 : aACTGAAATATTGATGATTAAAT-GAT-----A---------------TA-------CC----T-TTGA-----TAAA--G----A--TA-TTGATTGATTG----G--gttgc
gi|8 : tGTAGATCATTGCATTATATCTAATA--CAATGCTGA--AGTTAATGTA-TTG-----ATATATTG-CTGTCAGTTTTGATCA--AAGGTTTTA--ACAAAT-------------AGACCGCCAATAT--AGTGTTGCTGTTCTGTTCTATTGAAATAAtagatcattgcattatatctaatacaatgctgaagttaatgtattgatatattgctgtcagttttgatcaaaggttttaacaaatagaccgccaatatagtgttgctgttctgttctattgaaataa
gi|9 : tactgaaatattgatgattaaatgatatacctttgataaagatattgattgattgTCGGGCTT-ATTTA---GTTGAACC-ATTA---T--CGATCGATATTAGAGCCATCG---AT-A----TAA-----------T-GATACGCACATTGA--------------TTGATC-GGAATATCGA---A-------AT-ATTGATTG-----------------A-TTGTTAT-TGTTCGAATTGGTCCACTG-AATATTGATGATTGAATCAAT-----A---------------TA-------CC----T-TTGA-----TTGAGGA----A--TAATTG
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|15 ): GGAGCAATGTCATCGGGTCGATTCCTGAAATTCACACGATTATGTATGGGAAATTTGC
Unaligned ( gi|16 ): ATAACCTTTGATTGATTGATTGATTGATAACCTTTGATTGATTGATTGATT
Alignments
lowQualScore : 111111111111111111111111
lowQualScore : 2222222 333333 222 222222222222222222222222 1 2222 33333 2222 1 3333333333333 11 11 333333 444444444444444 1 8888888888888888888888888 22222 1 333333333 2222 1 1 11 2222 11 999999999999999 666666666666 111 11 222 222 11 3333 11 22 1111 1 1 7777777777 1 1 1 2222 11 111 22222222 6666666666666666666666 11 22222222222222 33333333333333333 555555555555555555555555555 2222222222222 11 2222222222222222222222222222222222222222 22222 3333333333333 1111111111111111 3333333333333333333333333333333 22222222 11111 11
lowQualScore : 1 0 5555555 888888 333 6 666666666666666666666666 2 4444 44444 0 8888 2 3 1 7777777777777 00 88 222222 1 1 444444444444444 1 1 5 1 1 1 1 1 1 1 3333333333333333333333333 1 66666 1 1 5 1 888888888 77 1111 0 0 0 4 0 7 6 0 3 22 0 7 0 88 0 3 8888 44 1 111111111111111 444444444444 444 88 333 1 999 333 6 88 9999 00 00 7 6 9999 1 1 1 1 1 1 1 5 1 0 0 3 222 6666666666 11 0 2 3 0 0 2 3 0 3333 4 3 11 0 1 6 111 77 5 11111111 5 66666 77 1111111111111111111111 1 55 99999999999999 88 1 22222222222222222 888888888888888888888888888 1 5 9999999999999 2 777 11 8888888888888888888888888888888888888888 1 22222 6666666666666 5 5 8888888888888888 9999999999999999999999999999999 33 1 0 1 77 99999999 5 44444 5 0 99 33 77 0 66
lowQualScore : . . ....... ...... ... . ........................ . .... ..... . .... . . . ............. .. .. ...... . . ............... . . . . . . . . . . ......................... . ..... . . . . ......... .. .... . . . . . . . . . .. . . . .. . . .... .. . ............... ............ ... .. ... . ... ... . .. .... .. .. . . .... . . . . . . . . . . . . ... .......... .. . . . . . . . . .... . . .. . . . ... .. . ........ . ..... .. ...................... . .. .............. .. . ................. ........................... . . ............. . ... .. ........................................ . ..... ............. . . ................ ............................... .. . . . .. ........ . ..... . . .. .. .. . ..
lowQualScore : 0 7 3333333 333333 333 7 000000000000000000000000 0 3333 33333 7 3333 0 7 0 7777777777777 00 33 000000 0 0 555555555555555 0 0 5 0 0 0 0 0 0 0 0000000000000000000000000 0 00000 0 0 0 0 000000000 55 2222 5 2 2 2 2 3 7 7 3 00 7 3 7 33 7 7 3333 33 0 777777777777777 333333333333 000 33 333 0 333 333 7 33 7777 33 77 3 7 0000 0 0 0 0 0 0 0 0 0 7 0 2 888 8888888888 22 0 5 2 0 0 0 2 2 2222 2 2 00 8 0 7 777 11 7 88888888 7 66666 99 7777777777777777777777 6 77 44444444444444 66 4 22222222222222222 666666666666666666666666666 0 0 2222222222222 7 888 11 4444444444444444444444444444444444444444 0 22222 6666666666666 0 0 6666666666666666 6666666666666666666666666666666 44 0 1 0 99 66666666 7 33333 7 4 77 77 99 1 11
consensus : NTATATACTTAGAAAATACACAAGATCCATACACTGATACCAGTAAAANATCCACGTCACC-A-TCATTC------TTCATATA---TTGAACCAGCT-A------------TA-CG--GC-ATAGTCAAGN---CTCAACA---GCCGCAATTTA----CATCACGCATTTCGCACAAGTTAGCGAATTANCTTCACTAATCATGCTACC-C--AATACGCAAGATCCATACACTGA--CAC--ATGGTAGTAAAACATCCACATCACCTATCATTCTTCATATACTGAACCANCTTNCAGCTATTCTACCGCCAANTTCAGNCTCAGTTCNAGCNGCAATTCANATCACGCATTTCGCACAGGTTAGNAAATNACCTTCACTAANCATGCTNCCCCTGAAAATACGCTAGATCCATACACTGATACTAGTAAAANATCCACATCACCTGCCATTNTTCATATACNGAACCAGCTATCGGCTATTCTGCANGCACATAGTTCAGCCTCAACNCAAGCTGCAATTTA----CATCACGCATTTCGCACAGGTTAGCGAATTACCTTCACTAACCATACTACCCCTACGCTACCAAACACTCGCGTTATTACGAATGTTGCTAAAACGGCAAT-CAATCCAGGNNCCGTCATTACCCGTAACGAATTATTATCCAAGCACACGCACA--CTTTCGTCAATCAGACCGTAGGCATATGGCCTAAGGTTCCCGTTCATTCAACCTCTTCCTCCATTATTCTTTATGCTACCTGTCGGACACTCAGA----AACT-TTTCGAA------GG-----A-CCTCGATGAAGAAAGG--------T--AGCGCCATCGCTTATATTTCTAC--TTGGC---AGTAAGCATNGGAGCA---ATTCATTGCATT--TACAACAT-TTCCACAACTTGTTTTGCCAGGGCCTT-ATATATATATATATACTATCCAGGAAACAAATCCTTG-CCTCATTTAAAACACNACGCATTGGATGCCTAGTTGGTATCNTCTTGTCCGATACTTCCCGGGTTTACTCNACATAGTCCATGACATGCTAGNACATACNCCTGACTATNCNTCTATCCAACTGGCGGTCTTNCTGTCACGGCGTTTAGC-AAAATGTTGTNNGCTTGTGGCGGATGTCCTCATGTAT---CGC----TTTGTTANGCATACATGAAGACATATGGC-CGAATTTTGCT-AAG-CCTGCCACGTATTCTGTTTCCTTCC-AG-TCCGTGGAC--AATAATTGGNCTT-ATTTA---ATCGA-CA-ATTT---T--CGATCGATAT-AGAGCCATCG--AAT-A----T-A-----------T-GATACGCACATTGA--------------TTGATC-GGAACATCGA---A-------AT-ATTGATTG---------------A-A-ATGTTG--TGTTNG-ATTGATC-----------CACTGAAATATT---GAT-GATTGA---A--------T-GA-----TATA-------TT----TATTGA-----TTGATTGA--T---------A-TT-GATTGATTG---G--A-NTA-----CGGACTGACTGTTGA-------TGCTACAGCATTACTAC-C-AAAAGTCGTTGTAGATCATTNCATTATACCNAATA--CAATGCTG--A--A--TAATGTA-TTG-----ATATAATG-CTGTCAGTTTTGATCAGAAATGTTTTA--ACAAGTAAAGCCATGACAAAGACCGCCAATAT--AGTGTTGTTGTTCTGTTCTATTGAAATAAT
Reference ( family-792 ) : NTATATACTTAGAAAATACACAAGATCCATACACTGATACCAGTAAAANATCCACGTCACC-A-TCATTC------TTCATATA---TTGAACCAGCT-A------------CACCG--GC-ATAGTCAAGN---CTCAACA---GCCGCAATTTA----CATCACGCATTTCGCACAAGTTAGCGAATTANCTTCACTAATCATGCTACC-C--AATACGCAAGATCCATACACTGA--CAC--ATGGTAGTAAAACATCCACATCACCTATCATTCTTCATATACTGAACCANCTTNCAGCTATTCTACCGCCAANTTCAGNCTCAGTTCNAGCNGCAATTCANATCACGCATTTCGCACAGGTTAGNAAATNACCTTCACTAANCATGCTNCCCCTGAAAATACGCTAGATCCATACACTGATACTAGTAAAANATCCACATCACCTGCCATTNTTCATATACNGAACCAGCTATCGGCTATTCTGCANGCACATAGTTCAGCCTCAACNCAAGCTGCAATTTA----CATCACGCATTTCGCACAGGTTAGCGAATTACCTTCACTAACCATACTACCCCTACGCTACCAAACACTCGCGTTATTACGAATGTTGCTAAAACGGCAAT-CAATCCAGGNNCCGTCATTACCCGTAACGAATTATTATCCAAGCACACGCACA--CTTTCGTCAATCAGACCGTAGGCATATGGCCTAAGGTTCCCGTTCATTCAACCTCTTCCTCCATTATTCTTTATGCTACCTGTCGGACACTCAGA----AACN-TTTTNAA------GA-----A-CCTCGATGAAGAAAGG--------T--AGCGCCATCGCTTATATTTCTAC--TTGGC---AGTAAGCATNGGAGCA---ATTCATTGCATT--TACAACAT-TTCCACAACTTGTTTTGCCAGGGCCTT-ATATATATATATATACTATCCAGGAAACAAATCCTTG-CCTCATTTAAAACACNACGCATTGGATGCCTAGTTGGTATCNTCTTGTCCGATACTTCCCGGGTTTACTCNACATAGTCCATGACATGCTAGNACATACNCCTGACTATNCNTCTATCCAACTGGCGGTCTTNCTGTCACGGCGTTTAGC-AAAATGTTGTNNGCTTGTGGCGGATGTCCTCATGTAT---CGC----TTTGTTANGCATACATGAAGACATATGGC-CGAATTTTGCT-AAG-CCTGCCACGTATTCTGTTTCCTTCC-AG-TCCGTGGAC--AATAATTGGNCTT-ATTTA---ATCGA-CA-ATTT---T--CGATCGATAT-AGAGCCATCG--AAT-A----T-A-----------T-GATACGCACATTGA--------------TTGATC-GGAACATCGA---A-------AT-ATTGATTG---------------A-A-ATGTTG--TGTTNG-ATTGATC-----------CACTGAAATATT---GAT-GATTGA---A--------T-GA-----TATA-------TT----TATTGA-----TTGATTGA--T---------A-TT-GATTGATTG---G--A-NTA-----CGGACTGACTGTTGA-------TGCTACAGCATTACTAC-C-AAAAGTCGTTGTAGATCATTNCATTATACCNAATA--CAATGCTG--A--A--TAATGTA-TTG-----ATATAATG-CTGTCAGTTTTGATCAGAAATGTTTTA--ACAAGTAAAGCCATGACAAAGACCGCCAATAT--AGTGTTGTTGTTCTGTTCTATTGAAATAAT
gi|1 : TATATACTTAGAAAATACACAAGATCCATACACTGATACCAGTAAAACATCCACATCACCTA-TCATTC------TTCATATAGTATTGAACCAGCT-ATCAGCTATTATACACTGTAGC-ATAGTTAAGT---CTCAATA---GCTGCAATCCA----CATCACACATTTTCCACAAGTTAGCAAATTACCTTCACTAATCATGCTACCACTGAATACGCAAATTCCATACACAGA--TAC--A----AGTAAAACATCCACATCATCTATCATTCTTTATATACTGAACCAGCTTTCAGCTATTCTACCGT--ATTTCAGACTCAATTCAAGCTGCAATTTACATCACACATTTCGCACAAGTTAGCAAATTACCTTCACTAAGCATGCTCCCCCTGAAAATACGCTAGATCCATACACTGATACTAGTAAAACATCCACATCACCTGCCATTCTTCATATACGGAACCAGCTATCGGCTATTCTGCATGTACATAGTTCAGCCTCAACG-AAGCTGCAATTTA----CATCACACAATTTGCACAGGTTAACAAATTACCTTCACTAATCATACTACCCCTACGCTACCAAACAC--GCGTTATTACGAATGTTGCTTAAACGGCAAT-CAATCTAGGCACCATCATTACCAGTAACGAATTGTTATCCAAGCACATGCACA--CTTTCGTCAATCAGACCGTAGGCTTATGGCCTAAGGTTCCTGTTCATTCAACCTCCTCCTCCATTACTCTTTATGCTATCTGTCGGACACTCAGA----AACT-TTTCAAA------G---------CTCGCTGAAGAAAAG--------TTAAGC-CCATCGCTTATATTTCTAC--TTGGC---AGTAAGCATAGGAACAATTATTCATTGCATT--TACAACATCTTCCACAACTTTTTTTGTCAGGGCCTTAATATATATATATATACTATCCAGGAAA--------------CATTTAAAACACAACGCATTGGATGCTTAGTTGGTATCCTCTTGTCCGATACTTCCCGGATTTACTCTACATAGTCCATGACATGTTAGCACATACCCTTGACTATCCATCTATCTAACTGGCAGTCTTCCTGTCACGGCGTTTAGCAAAAATGTTGCCCGCTTGTGGCGGATGTCCTCATGTAT----G-----TTTGTTAGGCATACATGAAGACATATGGC-CGAATTTTGCT-AAG-CCTTCCACATATTCTGTTTCCTTCCAAG-TCTGTGGAC--AATAATTGGACTT-ATTTA---ATCGA-CA-ATTT---T--CGATTGATAT-AGAGCCATCG--AAT-A----TAA-----------T-GATACGCATATTGG--------------TTGATC-GGAACATCAA---T-------AT-ATTAATAG---------------A-A-ATGTTG--TGTTCG-ATTGATT-----------CACTGAAATATT---GAT-GATTGA---A--------T-GA-----TATA-------TT----TATTGA-----TAGCTTGA--C---------ACTT-GATTGATTG---G--A-TTT-----TGGACTGACTTTTGA-------TGTTTCAGCATTACTAC-C-AAAAGTCGTGGTAGAGCATTGCATTATATCTAACG--CAATGCTC--A--AGTTAATGTA-TTG-----ATATATTG-CTGTCAGTTTTGATC--GAATGTTTTA--AGAAATAAAGCCATGACAAAGACCGCCAATATACAGTGTCGCTGCTCTGTTCTATTGAAATAAT
gi|10 : tGTATTGATACTC-AAACGTCGTTGTAGATCATTTCATTATACTAAATA--CAATACTG--ATAA--TAATGTA-TTG-----ATATAATGACTGTCCGTTTTAATCAGAAATGTTTTATTAAGAGTAAAGCCATGACAAAGACTGCCAATAT--AG---TGTTGTTCTGTT
gi|11 : taatTCTG-ATTGATTGGTTACATACACACTGACA-------GAT-GATTGA---T--------T-GATTGGTTACA-------TA----CAT--A-----CTGACAGA--TG--------A-TT-GATTGATTG---GTTACATA-----CACACTGAC
gi|12 : taccggatTTCATTG---A--A-TGA-----TGGTTTGATTGTTGA-------TCTTGCATCATTACTACTC-AAAAGTCAGTGTAGATCAagatgcacgcctgattctgattggttgattggacgttgtac
gi|13 : gtCATTGCATT--TACAAC---TTCCACAACTTGTTTTGCCAGGGCCTT--TAAA-ATATGTATACTACCCAGGAAACAAATCCTTG-CTTCATTTAAAACcgcaatggattcaaacagtatttcagaacaacagtatgacaa
gi|14 : ATTTAGC-C-AATTTTGCT-AAAACCTGCCTCATATTCTGTT--------------GTGGCC--AATAACTGGCTTTCATTTA---ATCAA-CACATT--------GATTGA
gi|17 : CCATGATAAAGACTGTCAGTTT--AGTGTTGTTATTCTG
gi|18 : AATAT--AGTGTTGTCGTTCTGCTCTATTGAAATAAT
gi|2 : CTTAACTCAAGCTGCAATTTA----CATCACACATTTCGCGCACGTTAGCAAATTACCTTCACTAACCATGCTACACTTACGCTACCCAACACTCGCATTATTACGTATGTTGCTAAAATGGCAATACAATCCAGGGTCCGTCATT-CCCGTAATGAATTATTATCCAAGCACACGAACAAACTTTCATCAATCAGACCTTAGGCATATGGCCTAAGGTTCCCGTTCATCCAACCTCTTCCTCCATTATTCTTTATGCTACCTGTCAGACACTCAGATTTAAGCT-TTTTTAA------AG-----A-CATTGATTAAGGGAG---------T--ACTGTCATTGGTTCGATTCCTAAAATTCACTCTATTATTCATTG---CA---ATT--TTGCAATAATAAAA-ATATTCCACAACTTGTTTT------------ATATATATACATGTACTCTCCAGGAAACAAATCCTTAACCTCATTTACAACATCACGCATTGGATGCCTAGTTAGTATCATCTTGTCTGATACTTCTCGGGTTTACTCAACATAGTCCATGACATGCTAGAACATATACCTAACTATGCTTCTATTCAA-TAGCGGTCTTTCTGTCATGGCGTTTAGC-AAAATGCTGTGTGCTTGTGGCGGATGTCTTCATGTAT----G-----TTTGTTAGGTATACATGAAGACATATGGC-CGATATTTACA-AAG-CCTGCCACATATTCTATTTCCTTCC-AGGTCTGTTGAC--AATAGTTGGACTT-ATTTA---ATCGA-CA-ATTA---T--CGATCGATAT-AGAGCCATCGAAAAT-ACTGAT-ACGCACATTGATT-GATCAGAACATTGAAATNNNNNNNNNNNNNNNNN-NNNNNNNNNN---N-------NN-NNNNNNNN---------------N-A-ACGTTT--TGTTGG-ATTGATC-----------CACTGAAATATTTATGATTGATTGATATACCTTTGGTT-GA-----GATA-------TT----GATCGA-----TTGATTGA--C---------A-TTTGATTGATTGATTG--A-CTGAAATTTGGACTGATTGTTGAGTGTTGATACTACAGTATTACTAC-CCAAAAGTCGTGGTAGATCATTG-ATTATATAAAATA--CAATGCTGAAA--A--TAATGTA-TTG-----ATATAAAG-CTCTCAGTTTTGATT--AAATGTTTTA--ACAAATAAAGCCATGGCAGAGACTGTCCATAT--AGTGTTGCTGTTCTGTTCTATTAATATAAT
gi|3 : tagcattgataatg--AATACACAAGATCCATACACTAA--CAC--CTGGTAGTAAAACATCCACATCACCTATCATTCTTCATATACTGAATCATCTTACA----------TGCCAAGTTCAGCCTCAGT-CTAGCAGCAATTCAAATCACGCATTTCGCACAGGTTAGAAAATGACCTTTACTAATCATGCTACCCTTGAAAATACG-------------------------AAAGATCCATAT-----ATCATTATTTATATACTGAACCAGCTATCGGCTATTCT-CAAGCAC---------CCTCAACATGAGCCGCAATTTA----CATCACGCATTTCGCACAGGTTATCTAATTAACGTCACTAATCACACtaaagctctatcatctatacattaatatacctcacactatcatactatttcttttaaat
gi|3 : tatatacttacaaAAAGATCCATAT-----A-TCATTA------TTTATATA---CTGAACCAGCT-A------------T--CG--GCTATTCTCAAGCACCCTCAACATGAGCCGCAATTTA----CATCACGCATTTCGCACAGGTTATCTAATTAACGTCACTAATC-------------ACACGCAAGATCCATACATTGAATCACTGATAATAGTAAAACgcaagatccatacattgaatcactgataatagtaaaactcaaactacaatttaattacatcaccatttcgcacaagtgggcgaattatcttcactaaccatactacccctacgctaccaaacactcgcgttattacaatgttgctaaaatggcaatcaatccaggtcccatcattacccgcaacgaattattacacaagcacatgcacactttcgtcaatcattccgtaggcatatggcctaagattcctgttcattcaccctcttccttcattattctttatgctacctgtctgactctcagaaaccattttgaatccattgattaatatcctcgatgaaaaaagggtaagcagtagcacatcacatataattctccttggcaggaagcatgggagcaat
gi|3 : tatatacttacaaaatacacaagatccatacactaacacctggtagtaaaacatccacatcacctatcattcttcatatactgaatcatcttacatgccaagttcagcctcagtctagcagcaattcaaatcacgcatttcgcacaggttagaaaatgacctttactaatcatgctacccttgaaaatacgACGTCACT-AATCACACGCAAGATCCATACA---TTGAATCA-CTGA------------TA--------ATAGT-AAAA---CTCAA-----ACTACAATTTAATTACATCAC-CATTTCGCACAAGTGGGCGAATTATCTTCACTAACCATACTACC-C---CTACGCTA---CCAAACACTtcaaactacaatttaattacatcaccatttcgcacaagtgggcgaattatcttcactaaccatactacccctacgctaccaaacactcgcgttattacaatgttgctaaaatggcaatcaatccaggtcccatcattacccgcaacgaattattacacaagcacatgcacactttcgtcaatcattccgtaggcatatggcctaagattcctgttcattcaccctcttccttcattattctttatgctacctgtctgactctcagaaaccattttgaatccattgattaatatcctcgatgaaaaaagggtaagcagtagcacatcacatataattctccttggcaggaagcatgggagcaat
gi|3 : tatatacttacaaaatacacaagatccatacactaacacctggtagtaaaacatccacatcacctatcattcttcatatactgaatcatcttacatgccaagttcagcctcagtctagcagcaattcaaatcacgcatttcgcacaggttagaaaatgacctttactaatcatgctacccttgaaaatacgaaagatccatatatcattatttatatactgaaccagctatcggctattctcaagcaccctcaacatgagccgcaatttacatcacgcatttcgcacaggttatctaattaAACTCAAACTACAATTTAATTACATCAC-CATTTCGCACAAGTGGGCGAATTATCTTCACTAACCATACTACCCCTACGCTACCAAACACTCGCGTTATTAC-AATGTTGCTAAAATGGCAAT-CAATCCAGGTCCCATCATTACCCGCAACGAATTATTACACAAGCACATGCACA--CTTTCGTCAATCATTCCGTAGGCATATGGCCTAAGATTCCTGTTCATTCACCCTCTTCCTTCATTATTCTTTATGCTACCTGTCTGACTCTCAGA----AACCATTTTGAATCCATTGATTAATATCCTCGATGAAAAAAGGGTAAGCAGT--AGCAC-ATCACATATAATTCTCC--TTGGC---AGGAAGCATGGGAGCA---ATcgcgttattacaatgttgctaaaatggcaatcaatccaggtcccatcattacccgcaacgaattattacacaagcacatgcacactttcgtcaatcattccgtaggcatatggcctaagattcctgttcattcaccctcttccttcattattctttatgctacctgtctgactctcagaaaccattttgaatccattgattaatatcctcgatgaaaaaagggtaagcagtagcacatcacatataattctccttggcaggaagcatgggagcaat
gi|4 : tatatacttacaaaatacacaagatccatacactaacacctggtagtaaaacatccacatcacctatcattcttcatatactgaatcatcttacatgccaagttcagcctcagtctagcagcaattcaaatcacgcatttcgcacaggttagaaaatgacctttactaatcatgctacccttgaaaatacgaaagatccatatatcattatttatatactgaaccagctatcggctattctcaagcaccctcaacatgagccgcaatttacatcacgcatttcgcacaggttatctaattaacgtcactaatcacacgcaagatccatacattgaatcactgataatagtaaGTGTTTAGC-AAAATGTTGTAAGCTTGTGGCGG
gi|4 : ACTGG--------------TTGATT-GGAACATTAA---T-------AA-ATTGATTgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatgaattgactggttgattggaacattaataaattgattcattagaactttgttggattggtatattgaatgattgatacttgattgattggtataatgattgattgaccatttcttgattgaaaacattgattgaatcaggattgattgaaaacattgattgaattattgattgattcaaatacggactgactgttgatactaaaacagtcgctgtagatcatttcgttataccaagtacaattctgataatgtaattacatgtatgtaatgctctcagttttaatcagaaatgctaaattaagtgaagccatgacaaagactgtcagtttagtgctgttgttctgttctattgaaatgataattccagcacgtataaccctaccctagtactgatgttttaattatgctttgcttgattataagccgaggttcaggattagtcttaattatctgctcaagtgagtacattgaaaactgg
gi|4 : gtgtttagcaaaatgttgtaagcttgtggcgggnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatgaattgT---T--GGATTGGTAT-A------TTG--AATGA----T-------------T-GATAC-----TTGA--------------TTGATT-GG--TAT------A-------ATGATTGATTG---------------A-CCAT-TT-----CTTG-ATTGA------------------AAACATT---GAT----TGA---A--------T-CA-----GG-A-------TT----GATTGAAAACATTGATTGAATT---------A-TT-GATTGATTC---A--A-ATA-----CGGACTGACTGTTGA-------TACTAAAACA--------------GTCGCTGTAGATCATTTCGTTATACCAAGTA--CAATTCTG--A-----TAATGTAATTACATGTATGTAATG-CTCTCAGTTTTAATCAGAAATGCTAAA--TTAAGTGAAGCCATGACAAAGACTGTCAGTTT--AGTGCTGTTGTTCTGTTCTATTGAAATGATcattagaactttgttggattggtatattgaatgattgatacttgattgattggtataatgattgattgaccatttcttgattgaaaacattgattgaatcaggattgattgaaaacattgattgaattattgattgattcaaatacggactgactgttgatactaaaacagtcgctgtagatcatttcgttataccaagtacaattctgataatgtaattacatgtatgtaatgctctcagttttaatcagaaatgctaaattaagtgaagccatgacaaagactgtcagtttagtgctgttgttctgttctattgaaatgataattccagcacgtataaccctaccctagtactgatgttttaattatgctttgcttgattataagccgaggttcaggattagtcttaattatctgctcaagtgagtacattgaaaactgg
gi|5 : gtgtttagcaaaatgttgtaagcttgtggcgggnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatgaattgactggttgattggaacattaataaattgattcattagaactttgGTCTCGCTGTCATGGTGCGTAAT-AAAATGT---CAGCTTGTGGCGGATGTCTTCATGTATGTACGCA---TTTTTCATACATACATGAAGACATATGaattccagcacgtataaccctaccctagtactgatgttttaattatgctttgcttgattataagccgaggttcaggattagtcttaattatctgctcaagtgagtacattgaaaactgg
gi|5 : gtaA-CA-ACTTCGTT--GGATTGGTAT-A------TTG--AATGA----T-------------T-GATAC-----TTGA--------------TTGGT-------AT------A-------ATGATTGATTG---------------ACA-AT-TT-----CTTG-ATTGA------------------AAACATT---GAT----TGA---A--------T-AA-----TG-A-------TT----GATTGAAAACATTGATTGAATT---------A-TT-GATTGATTC---A--A-ATA-----CGGACTGACTGTTGA-------TGCTAAAGCA--------------GTCGCTGAAGATCATTTCATTATACCGAGTA--CAATTCTG--A-----TAATGTA-TTT-----ATGTAATG-CTGTCAGTTTTAATCAGAAATGTTAAA--TCAAGTAAAGCCATGACAAAGACTGCCAGTTT--AGTGTTGTTGTTCTGTTCTATTGAAATGATnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncagtgattgattacaacttcgttggattggtatattgaatgattgatacttgattggtataatgattgattgacaatttcttgattgaaaacattgattgaataatgattgattgaaaacattgattgaattattgattgattcaaatacggactgactgttgatgctaaagcagtcgctgaagatcatttcattataccgagtacaattctgataatgtatttatgtaatgctgtcagttttaatcagaaatgttaaatcaagtaaagccatgacaaagactgccagtttagtgttgttgttctgttctattgaaatgataattccagcacttacaaccttaccctagtactgttgttttaattaggttttgcttgattataagccgaggttcaggattagttttaattatctcctcaaatgagtacattgaatactg
gi|6 : gtagtctcgctgtcatggtgcgtaataaaatgtcagcttgtggcggatgtcttcatgtatgtacgcatttttcatacatacatgaagacatatgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncagtgattgattAC--AATTATACGTCCT-TTTTG---AGCGC-CA--TTT---TGACGAACATTCT-AGAGACATCG--AAT-A----T-A-----------CCGATTCG-ACATTGA--------------TTGATC-GCAACATCGA---A-------AG-ATTGATTGATTGATGATTTATTGA-A-ATATTG--TGTCGG-ATTGATC-----------CACTGAAATATT---GAT-GATTGA---T--------T-GA-----CATACCCTTGATTGAAATATTGA-----TTGATTGC--TTGACACTTGA-TT-GATTGATTG---G--A-TTT-----TGGACTGACTGTTGA-------T-----------ACTAC---------------AG--CATTAC----TGCCCAAAAGTCGTTG-TA--G--A--TAATGTA-TTG-----ATATAATA-CCGTCAGTTT----------------A--ACAAATAAAGCCATGACAAAGACCGCCAATAT--TGTGaattccagcacttacaaccttaccctagtactgttgttttaattaggttttgcttgattataagccgaggttcaggattagttttaattatctcctcaaatgagtacattgaatactg
gi|7 : aTGGCGGATGTCCGTATGTAT---CATCACTTTTGTTATTCACACATGAAGACACATGGCGCGAATTT-GCTTAAG-CCTGCCATGGATTTTGTTTCTTTCC-AGTTCCG-GGACCGAA-AATTAGCTTT-ATCCATGCATTG---A-AT---------GATTGACAT-AGATTAATTC--AA-----------------------------CACATTGA--------------TTGATTAAAAACGTTGATTTAGACATTCAT-ATTGATTG---------------A------TTGATTGTTAT-ATTGATT-----------TACTGAAGAATT----AT---TTGA---A--------T-AA-----TTGG-------TT----TATAAA-----TTGATTG---------------TT-GAT
gi|8 : aACTGAAATATT---GAT-GATTAA---A--------T-GA-----TATA-------CC----T-TTGA-----TAAA--GA--T---------A-TT-GATTGATTG---G--gttgc
gi|8 : tGTAGATCATTGCATTATATCTAATA--CAATGCTG--A--AGTTAATGTA-TTG-----ATATATTG-CTGTCAGTTTTGATC--AAAGGTTTTA--ACAAAT-------------AGACCGCCAATAT--AGTGTTGCTGTTCTGTTCTATTGAAATAAtagatcattgcattatatctaatacaatgctgaagttaatgtattgatatattgctgtcagttttgatcaaaggttttaacaaatagaccgccaatatagtgttgctgttctgttctattgaaataa
gi|9 : tactgaaatattgatgattaaatgatatacctttgataaagatattgattgattgTCGGGCTT-ATTTA---GTTGAACC-ATTA---T--CGATCGATATTAGAGCCATCG---AT-A----TAA-----------T-GATACGCACATTGA--------------TTGATC-GGAATATCGA---A-------AT-ATTGATTG-----------------A-TTGTTAT-TGTTCGAATTGGTC-----------CACTG-AATATT---GAT-GATTGA---A--------TCAA-----TATA-------CC----T-TTGA-----TTGA
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|15 ): GGAGCAATGTCATCGGGTCGATTCCTGAAATTCACACGATTATGTATGGGAAATTTGC
Unaligned ( gi|16 ): ATAACCTTTGATTGATTGATTGATTGATAACCTTTGATTGATTGATTGATT
Alignments
lowQualScore : 111111111111111111111
lowQualScore : 2222222 333333 222 1 111111111111111111111 1 2222 33333 2222 1 3333333333333 11 11 333333 444444444444444 1 8888888888888888888888888 22222 1 333333333 2222 1 1 11 2222 1 888888888888888 77777777777777777 11 222 222 11 3333 11 22 1111 1 1 7777777777 1 1 1 2222 11 111 22222222 6666666666666666666666 11 22222222222222 33333333333333333 6666666666666666666666666666 11 3333333333333333333333333333333333333333 22222 3333333333333 1111111111111111 3333333333333333333333333333333 222222 11111 11
lowQualScore : 1 0 5555555 888888 333 6 3 999999999999999999999 2 4444 44444 0 8888 2 3 1 7777777777777 00 88 222222 1 1 444444444444444 1 1 5 1 1 1 1 1 1 1 3333333333333333333333333 1 66666 1 1 5 1 888888888 77 1111 0 0 0 4 0 6 6 0 3 22 0 7 0 88 0 3 8888 3 44 666666666666666 33333333333333333 88 333 1 999 333 6 88 9999 00 00 7 6 9999 1 1 1 1 1 1 1 5 1 0 0 3 222 6666666666 11 0 2 3 0 0 2 3 0 3333 4 3 11 0 1 6 111 77 5 11111111 5 66666 77 1111111111111111111111 1 55 99999999999999 88 1 22222222222222222 0000000000000000000000000000 1 5 88 2 777 33 0000000000000000000000000000000000000000 00000 8888888888888 4 4 8888888888888888 9999999999999999999999999999999 33 1 0 1 77 999999 5 44444 5 0 99 33 77 0 66
lowQualScore : . . ....... ...... ... . . ..................... . .... ..... . .... . . . ............. .. .. ...... . . ............... . . . . . . . . . . ......................... . ..... . . . . ......... .. .... . . . . . . . . . .. . . . .. . . .... . .. ............... ................. .. ... . ... ... . .. .... .. .. . . .... . . . . . . . . . . . . ... .......... .. . . . . . . . . .... . . .. . . . ... .. . ........ . ..... .. ...................... . .. .............. .. . ................. ............................ . . .. . ... .. ........................................ ..... ............. . . ................ ............................... .. . . . .. ...... . ..... . . .. .. .. . ..
lowQualScore : 0 7 3333333 333333 333 7 3 333333333333333333333 0 3333 33333 7 3333 0 7 0 7777777777777 00 33 000000 0 0 555555555555555 0 0 5 0 0 0 0 0 0 0 0000000000000000000000000 0 00000 0 0 0 0 000000000 55 2222 5 2 2 2 2 7 7 7 3 00 7 3 7 33 7 7 3333 3 33 000000000000000 00000000000000000 33 333 0 333 333 7 33 7777 33 77 3 7 0000 0 0 0 0 0 0 0 0 0 7 0 2 888 8888888888 22 0 5 2 0 0 0 2 2 2222 2 2 00 8 0 7 777 11 7 88888888 7 66666 99 7777777777777777777777 6 77 44444444444444 66 4 22222222222222222 4444444444444444444444444444 0 0 55 7 000 00 1111111111111111111111111111111111111111 00000 7777777777777 4 4 6666666666666666 6666666666666666666666666666666 44 0 1 0 99 666666 7 33333 7 4 77 77 99 1 11
consensus : NTATATACTTAGAAAATACACAAGATCCATACACTGATACCAGTAAAANATCCACGTCACC-A-TCATTC------TTCATATA---TTGAACCAGCT-AT------------AC---GGC-ATAGTCAAGN---CTCAACA---GCCGCAATTTA----CATCACGCATTTCGCACAAGTTAGCGAATTANCTTCACTAATCATGCTACC-C--AATACGCAAGATCCATACACTGA--CAC--ATGGTAGTAAAACATCCACATCACCTATCATTCTTCATATACTGAACCANCTTNCAGCTATTCTACCGCCAANTTCAGNCTCAGTTCNAGCNGCAATTCANATCACGCATTTCGCACAGGTTAGNAAATNACCTTCACTAANCATGCTNCCCCTGAAAATACGCTAGATCCATACACTGATACTAGTAAAANATCCACATCACCTGCCATTNTTCATATACNGAACCAGCTATCGGCTATTCTGCANGCACATAGTTCAGCCTCAACNCAAGCTGCAATTTA----CATCACGCATTTCGCACAGGTTAGCGAATTACCTTCACTAACCATACTACCCCTACGCTACCAAACACTCGCGTTATTACGAATGTTGCTAAAACGGCAAT-CAATCCAGGNNCCGTCATTACCCGTAACGAATTATTATCCAAGCACACGCACA--CTTTCGTCAATCAGACCGTAGGCATATGGCCTAAGGTTCCCGTTCATTCAACCTCTTCCTCCATTATTCTTTATGCTACCTGTCGGACACTCAGA----AACT-TTTCGAA-----NGA-------CCTCGATGAAGAAAG--------GT--AGCGCCATCGCTTATATTTCTAC--TTGGC---AGTAAGCATNGGAGCA---ATTCATTGCATT--TACAACAT-TTCCACAACTTGTTTTGCCAGGGCCTT-ATATATATATATATACTATCCAGGAAACAAATCCTTG-CCTCATTTAAAACACNACGCATTGGATGCCTAGTTGGTATCNTCTTGTCCGATACTTCCCGGGTTTACTCNACATAGTCCATGACATGCTAGNACATACNCCTGACTATNCNTCTATCCAACTGGCGGTCTTNCTGTCACGGCGTTTAGC-AAAATGTTGTNNGCTTGTGGCGGATGTCCTCATGTAT---CGC----TTTGTTANGCATACATGAAGACATATGGC-CGAATTTTGCT-AAG-CCTGCCACGTATTCTGTTTCCTTCC-AG-TCCGTGGAC--AATAATTGGNCTT-ATTTA---ATCGA-CA-ATTT---T--CGATCGATAT-AGAGCCATCG--AAT-A----T-A-----------T-GATACGCACATTGA--------------TTGATC-GGAACATCGA---A-------AT-ATTGATTG---------------A-A-ATGTTG--TGTTNG-ATTGATCCACTGAAATATT---GAT-GATTGA---A--------T-GAT-----ATA-------TT----TATTGA-----TTGATTGA--T---------A-TT-GATTGATTG---G--A-NTA-----CGGACTGACTGTTGA-------TGCTACAGCATTACTAC-C-AAAAGTCGTTGTAGATCATTNCATTATACCNAATA--CAATGCTG--AA--TAATGTA-TTG-----ATATAATG-CTGTCAGTTTTGATCAGAAATGTTTTA--ACAAGTAAAGCCATGACAAAGACCGCCAATAT--AGTGTTGTTGTTCTGTTCTATTGAAATAAT
Reference ( family-792 ) : NTATATACTTAGAAAATACACAAGATCCATACACTGATACCAGTAAAANATCCACGTCACC-A-TCATTC------TTCATATA---TTGAACCAGCT-AT------------AC---GGC-ATAGTCAAGN---CTCAACA---GCCGCAATTTA----CATCACGCATTTCGCACAAGTTAGCGAATTANCTTCACTAATCATGCTACC-C--AATACGCAAGATCCATACACTGA--CAC--ATGGTAGTAAAACATCCACATCACCTATCATTCTTCATATACTGAACCANCTTNCAGCTATTCTACCGCCAANTTCAGNCTCAGTTCNAGCNGCAATTCANATCACGCATTTCGCACAGGTTAGNAAATNACCTTCACTAANCATGCTNCCCCTGAAAATACGCTAGATCCATACACTGATACTAGTAAAANATCCACATCACCTGCCATTNTTCATATACNGAACCAGCTATCGGCTATTCTGCANGCACATAGTTCAGCCTCAACNCAAGCTGCAATTTA----CATCACGCATTTCGCACAGGTTAGCGAATTACCTTCACTAACCATACTACCCCTACGCTACCAAACACTCGCGTTATTACGAATGTTGCTAAAACGGCAAT-CAATCCAGGNNCCGTCATTACCCGTAACGAATTATTATCCAAGCACACGCACA--CTTTCGTCAATCAGACCGTAGGCATATGGCCTAAGGTTCCCGTTCATTCAACCTCTTCCTCCATTATTCTTTATGCTACCTGTCGGACACTCAGA----AACT-TTTCGAA-----GGA-------CCTCGATGAAGAAAG--------GT--AGCGCCATCGCTTATATTTCTAC--TTGGC---AGTAAGCATNGGAGCA---ATTCATTGCATT--TACAACAT-TTCCACAACTTGTTTTGCCAGGGCCTT-ATATATATATATATACTATCCAGGAAACAAATCCTTG-CCTCATTTAAAACACNACGCATTGGATGCCTAGTTGGTATCNTCTTGTCCGATACTTCCCGGGTTTACTCNACATAGTCCATGACATGCTAGNACATACNCCTGACTATNCNTCTATCCAACTGGCGGTCTTNCTGTCACGGCGTTTAGC-AAAATGTTGTNNGCTTGTGGCGGATGTCCTCATGTAT---CGC----TTTGTTANGCATACATGAAGACATATGGC-CGAATTTTGCT-AAG-CCTGCCACGTATTCTGTTTCCTTCC-AG-TCCGTGGAC--AATAATTGGNCTT-ATTTA---ATCGA-CA-ATTT---T--CGATCGATAT-AGAGCCATCG--AAT-A----T-A-----------T-GATACGCACATTGA--------------TTGATC-GGAACATCGA---A-------AT-ATTGATTG---------------A-A-ATGTTG--TGTTNG-ATTGATCCACTGAAATATT---GAT-GATTGA---A--------T-GAT-----ATA-------TT----TATTGA-----TTGATTGA--T---------A-TT-GATTGATTG---G--A-NTA-----CGGACTGACTGTTGA-------TGCTACAGCATTACTAC-C-AAAAGTCGTTGTAGATCATTNCATTATACCNAATA--CAATGCTG--AA--TAATGTA-TTG-----ATATAATG-CTGTCAGTTTTGATCAGAAATGTTTTA--ACAAGTAAAGCCATGACAAAGACCGCCAATAT--AGTGTTGTTGTTCTGTTCTATTGAAATAAT
gi|1 : TATATACTTAGAAAATACACAAGATCCATACACTGATACCAGTAAAACATCCACATCACCTA-TCATTC------TTCATATAGTATTGAACCAGCT-ATCAGCTATTATACACTGTAGC-ATAGTTAAGT---CTCAATA---GCTGCAATCCA----CATCACACATTTTCCACAAGTTAGCAAATTACCTTCACTAATCATGCTACCACTGAATACGCAAATTCCATACACAGA--TAC--A----AGTAAAACATCCACATCATCTATCATTCTTTATATACTGAACCAGCTTTCAGCTATTCTACCGT--ATTTCAGACTCAATTCAAGCTGCAATTTACATCACACATTTCGCACAAGTTAGCAAATTACCTTCACTAAGCATGCTCCCCCTGAAAATACGCTAGATCCATACACTGATACTAGTAAAACATCCACATCACCTGCCATTCTTCATATACGGAACCAGCTATCGGCTATTCTGCATGTACATAGTTCAGCCTCAACG-AAGCTGCAATTTA----CATCACACAATTTGCACAGGTTAACAAATTACCTTCACTAATCATACTACCCCTACGCTACCAAACA--CGCGTTATTACGAATGTTGCTTAAACGGCAAT-CAATCTAGGCACCATCATTACCAGTAACGAATTGTTATCCAAGCACATGCACA--CTTTCGTCAATCAGACCGTAGGCTTATGGCCTAAGGTTCCTGTTCATTCAACCTCCTCCTCCATTACTCTTTATGCTATCTGTCGGACACTCAGA----AACT-TTTCAAA-----G----------CTCGCTGAAGAAAA--------GTTAAGC-CCATCGCTTATATTTCTAC--TTGGC---AGTAAGCATAGGAACAATTATTCATTGCATT--TACAACATCTTCCACAACTTTTTTTGTCAGGGCCTTAATATATATATATATACTATCCAGGAAA--------------CATTTAAAACACAACGCATTGGATGCTTAGTTGGTATCCTCTTGTCCGATACTTCCCGGATTTACTCTACATAGTCCATGACATGTTAGCACATACCCTTGACTATCCATCTATCTAACTGGCAGTCTTCCTGTCACGGCGTTTAGCAAAAATGTTGCCCGCTTGTGGCGGATGTCCTCATGTAT----G-----TTTGTTAGGCATACATGAAGACATATGGC-CGAATTTTGCT-AAG-CCTTCCACATATTCTGTTTCCTTCCAAG-TCTGTGGAC--AATAATTGGACTT-ATTTA---ATCGA-CA-ATTT---T--CGATTGATAT-AGAGCCATCG--AAT-A----TAA-----------T-GATACGCATATTGG--------------TTGATC-GGAACATCAA---T-------AT-ATTAATAG---------------A-A-ATGTTG--TGTTCG-ATTGATTCACTGAAATATT---GAT-GATTGA---A--------T-GAT-----ATA-------TT----TATTGA-----TAGCTTGA--C---------ACTT-GATTGATTG---G--A-TTT-----TGGACTGACTTTTGA-------TGTTTCAGCATTACTAC-C-AAAAGTCGTGGTAGAGCATTGCATTATATCTAACG--CAATGCTC--AAGTTAATGTA-TTG-----ATATATTG-CTGTCAGTTTTGATC--GAATGTTTTA--AGAAATAAAGCCATGACAAAGACCGCCAATATACAGTGTCGCTGCTCTGTTCTATTGAAATAAT
gi|10 : tGTATTGATACTC-AAACGTCGTTGTAGATCATTTCATTATACTAAATA--CAATACTGATAA--TAATGTA-TTG-----ATATAATGACTGTCCGTTTTAATCAGAAATGTTTTATTAAGAGTAAAGCCATGACAAAGACTGCCAATAT--AG---TGTTGTTCTGTT
gi|11 : taatTGATTG---------------A------TTG---GTTAC-AT--ACACACTGACA-------GAT-GATTGA---T--------T-GATTGGTTACA-------TA----CAT--A-----CTGACAGA--TG--------A-TT-GATTGATTG---GTTACATA-----CACACTGAC
gi|12 : taccggattcTTCATTG---A--A-TGA-----TGGTTTGATTGTTGA-------TCTTGCATCATTACTACTC-AAAAGTCAGTGTAGATCAagatgcacgcctgattctgattggttgattggacgttgtac
gi|13 : gtCATTGCATT--TACAAC---TTCCACAACTTGTTTTGCCAGGGCCTT--TAAA-ATATGTATACTACCCAGGAAACAAATCCTTG-CTTCATTTAAAACcgcaatggattcaaacagtatttcagaacaacagtatgacaa
gi|14 : ATTTAGC-C-AATTTTGCT-AAAACCTGCCTCATATTCTGTT--------------GTGGCC--AATAACTGGCTTTCATTTA---ATCAA-CACATT--------GATTGA
gi|16 : ATT---GATTGATTGA---T--------T-GAT-----A-A-------CC----T-TTGA-----TTGATTG-------------A-TT-GATT
gi|17 : ataacctttgCCATGATAAAGACTGTCAGTTT--AGTGTTGTTATTCTG
gi|18 : AATAT--AGTGTTGTCGTTCTGCTCTATTGAAATAAT
gi|2 : CTTAACTCAAGCTGCAATTTA----CATCACACATTTCGCGCACGTTAGCAAATTACCTTCACTAACCATGCTACACTTACGCTACCCAACACTCGCATTATTACGTATGTTGCTAAAATGGCAATACAATCCAGGGTCCGTCATT-CCCGTAATGAATTATTATCCAAGCACACGAACAAACTTTCATCAATCAGACCTTAGGCATATGGCCTAAGGTTCCCGTTCATCCAACCTCTTCCTCCATTATTCTTTATGCTACCTGTCAGACACTCAGATTTAAGCT-TTTTTAA-----AGA-------CATTGATTAAGGGAG---------T--ACTGTCATTGGTTCGATTCCTAAAATTCACTCTATTATTCATTG---CA---ATT--TTGCAATAATAAAA-ATATTCCACAACTTGTTTT------------ATATATATACATGTACTCTCCAGGAAACAAATCCTTAACCTCATTTACAACATCACGCATTGGATGCCTAGTTAGTATCATCTTGTCTGATACTTCTCGGGTTTACTCAACATAGTCCATGACATGCTAGAACATATACCTAACTATGCTTCTATTCAA-TAGCGGTCTTTCTGTCATGGCGTTTAGC-AAAATGCTGTGTGCTTGTGGCGGATGTCTTCATGTAT----G-----TTTGTTAGGTATACATGAAGACATATGGC-CGATATTTACA-AAG-CCTGCCACATATTCTATTTCCTTCC-AGGTCTGTTGAC--AATAGTTGGACTT-ATTTA---ATCGA-CA-ATTA---T--CGATCGATAT-AGAGCCATCGAAAAT-ACTGAT-ACGCACATTGATT-GATCAGAACATTGAAATNNNNNNNNNNNNNNNNN-NNNNNNNNNN---N-------NN-NNNNNNNN---------------N-A-ACGTTT--TGTTGG-ATTGATCCACTGAAATATTTATGATTGATTGATATACCTTTGGTT-GAG-----ATA-------TT----GATCGA-----TTGATTGA--C---------A-TTTGATTGATTGATTG--A-CTGAAATTTGGACTGATTGTTGAGTGTTGATACTACAGTATTACTAC-CCAAAAGTCGTGGTAGATCATTG-ATTATATAAAATA--CAATGCTGAAAA--TAATGTA-TTG-----ATATAAAG-CTCTCAGTTTTGATT--AAATGTTTTA--ACAAATAAAGCCATGGCAGAGACTGTCCATAT--AGTGTTGCTGTTCTGTTCTATTAATATAAT
gi|3 : tagcattgataatg--AATACACAAGATCCATACACTAA--CAC--CTGGTAGTAAAACATCCACATCACCTATCATTCTTCATATACTGAATCATCTTACA----------TGCCAAGTTCAGCCTCAGT-CTAGCAGCAATTCAAATCACGCATTTCGCACAGGTTAGAAAATGACCTTTACTAATCATGCTACCCTTGAAAATACG-------------------------AAAGATCCATAT-----ATCATTATTTATATACTGAACCAGCTATCGGCTATTCT-CAAGCAC---------CCTCAACATGAGCCGCAATTTA----CATCACGCATTTCGCACAGGTTATCTAATTAACGTCACTAATCACACtaaagctctatcatctatacattaatatacctcacactatcatactatttcttttaaat
gi|3 : tatatacttacaaAAAGATCCATAT-----A-TCATTA------TTTATATA---CTGAACCAGCT-AT-------------C---GGCTATTCTCAAGCACCCTCAACATGAGCCGCAATTTA----CATCACGCATTTCGCACAGGTTATCTAATTAACGTCACTAATC-------------ACACGCAAGATCCATACATTGAATCACTGATAATAGTAAAACgcaagatccatacattgaatcactgataatagtaaaactcaaactacaatttaattacatcaccatttcgcacaagtgggcgaattatcttcactaaccatactacccctacgctaccaaacactcgcgttattacaatgttgctaaaatggcaatcaatccaggtcccatcattacccgcaacgaattattacacaagcacatgcacactttcgtcaatcattccgtaggcatatggcctaagattcctgttcattcaccctcttccttcattattctttatgctacctgtctgactctcagaaaccattttgaatccattgattaatatcctcgatgaaaaaagggtaagcagtagcacatcacatataattctccttggcaggaagcatgggagcaat
gi|3 : tatatacttacaaaatacacaagatccatacactaacacctggtagtaaaacatccacatcacctatcattcttcatatactgaatcatcttacatgccaagttcagcctcagtctagcagcaattcaaatcacgcatttcgcacaggttagaaaatgacctttactaatcatgctacccttgaaaatacgACGTCACT-AATCACACGCAAGATCCATACA---TTGAATCA-CTGAT------------A--------ATAGT-AAAA---CTCAA-----ACTACAATTTAATTACATCAC-CATTTCGCACAAGTGGGCGAATTATCTTCACTAACCATACTACC-C---CTACGCTA---CCAAACACTtcaaactacaatttaattacatcaccatttcgcacaagtgggcgaattatcttcactaaccatactacccctacgctaccaaacactcgcgttattacaatgttgctaaaatggcaatcaatccaggtcccatcattacccgcaacgaattattacacaagcacatgcacactttcgtcaatcattccgtaggcatatggcctaagattcctgttcattcaccctcttccttcattattctttatgctacctgtctgactctcagaaaccattttgaatccattgattaatatcctcgatgaaaaaagggtaagcagtagcacatcacatataattctccttggcaggaagcatgggagcaat
gi|3 : tatatacttacaaaatacacaagatccatacactaacacctggtagtaaaacatccacatcacctatcattcttcatatactgaatcatcttacatgccaagttcagcctcagtctagcagcaattcaaatcacgcatttcgcacaggttagaaaatgacctttactaatcatgctacccttgaaaatacgaaagatccatatatcattatttatatactgaaccagctatcggctattctcaagcaccctcaacatgagccgcaatttacatcacgcatttcgcacaggttatctaattaAACTCAAACTACAATTTAATTACATCAC-CATTTCGCACAAGTGGGCGAATTATCTTCACTAACCATACTACCCCTACGCTACCAAACACTCGCGTTATTAC-AATGTTGCTAAAATGGCAAT-CAATCCAGGTCCCATCATTACCCGCAACGAATTATTACACAAGCACATGCACA--CTTTCGTCAATCATTCCGTAGGCATATGGCCTAAGATTCCTGTTCATTCACCCTCTTCCTTCATTATTCTTTATGCTACCTGTCTGACTCTCAGA----AACCATTTTGAATCCATTGATTAATATCCTCGATGAAAAAAGGGTAAGCAGT--AGCA-CATCACATATAATTCTCC--TTGGC---AGGAAGCATGGGAGCA---ATcgcgttattacaatgttgctaaaatggcaatcaatccaggtcccatcattacccgcaacgaattattacacaagcacatgcacactttcgtcaatcattccgtaggcatatggcctaagattcctgttcattcaccctcttccttcattattctttatgctacctgtctgactctcagaaaccattttgaatccattgattaatatcctcgatgaaaaaagggtaagcagtagcacatcacatataattctccttggcaggaagcatgggagcaat
gi|4 : tatatacttacaaaatacacaagatccatacactaacacctggtagtaaaacatccacatcacctatcattcttcatatactgaatcatcttacatgccaagttcagcctcagtctagcagcaattcaaatcacgcatttcgcacaggttagaaaatgacctttactaatcatgctacccttgaaaatacgaaagatccatatatcattatttatatactgaaccagctatcggctattctcaagcaccctcaacatgagccgcaatttacatcacgcatttcgcacaggttatctaattaacgtcactaatcacacgcaagatccatacattgaatcactgataatagtaaGTGTTTAGC-AAAATGTTGTAAGCTTGTGGCGG
gi|4 : ACTGG--------------TTGATT-GGAACATTAA---T-------AA-ATTGATTgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatgaattgactggttgattggaacattaataaattgattcattagaactttgttggattggtatattgaatgattgatacttgattgattggtataatgattgattgaccatttcttgattgaaaacattgattgaatcaggattgattgaaaacattgattgaattattgattgattcaaatacggactgactgttgatactaaaacagtcgctgtagatcatttcgttataccaagtacaattctgataatgtaattacatgtatgtaatgctctcagttttaatcagaaatgctaaattaagtgaagccatgacaaagactgtcagtttagtgctgttgttctgttctattgaaatgataattccagcacgtataaccctaccctagtactgatgttttaattatgctttgcttgattataagccgaggttcaggattagtcttaattatctgctcaagtgagtacattgaaaactgg
gi|4 : gtgtttagcaaaatgttgtaagcttgtggcgggnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatgaattgT---T--GGATTGGTAT-A------TTG--AATGA----T-------------T-GATAC-----TTGA--------------TTGATT-GG--TAT------A-------ATGATTGATTG---------------A-CCAT-TT-----CTTG-ATTGA-------AAACATT---GAT----TGA---A--------T-CAG-----G-A-------TT----GATTGAAAACATTGATTGAATT---------A-TT-GATTGATTC---A--A-ATA-----CGGACTGACTGTTGA-------TACTAAAACA--------------GTCGCTGTAGATCATTTCGTTATACCAAGTA--CAATTCTG--A---TAATGTAATTACATGTATGTAATG-CTCTCAGTTTTAATCAGAAATGCTAAA--TTAAGTGAAGCCATGACAAAGACTGTCAGTTT--AGTGCTGTTGTTCTGTTCTATTGAAATGATcattagaactttgttggattggtatattgaatgattgatacttgattgattggtataatgattgattgaccatttcttgattgaaaacattgattgaatcaggattgattgaaaacattgattgaattattgattgattcaaatacggactgactgttgatactaaaacagtcgctgtagatcatttcgttataccaagtacaattctgataatgtaattacatgtatgtaatgctctcagttttaatcagaaatgctaaattaagtgaagccatgacaaagactgtcagtttagtgctgttgttctgttctattgaaatgataattccagcacgtataaccctaccctagtactgatgttttaattatgctttgcttgattataagccgaggttcaggattagtcttaattatctgctcaagtgagtacattgaaaactgg
gi|5 : gtgtttagcaaaatgttgtaagcttgtggcgggnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatgaattgactggttgattggaacattaataaattgattcattagaactttgGTCTCGCTGTCATGGTGCGTAAT-AAAATGT---CAGCTTGTGGCGGATGTCTTCATGTATGTACGCA---TTTTTCATACATACATGAAGACATATGaattccagcacgtataaccctaccctagtactgatgttttaattatgctttgcttgattataagccgaggttcaggattagtcttaattatctgctcaagtgagtacattgaaaactgg
gi|5 : gtaA-CA-ACTTCGTT--GGATTGGTAT-A------TTG--AATGA----T-------------T-GATAC-----TTGA--------------TTGGT-------AT------A-------ATGATTGATTG---------------ACA-AT-TT-----CTTG-ATTGA-------AAACATT---GAT----TGA---A--------T-AAT-----G-A-------TT----GATTGAAAACATTGATTGAATT---------A-TT-GATTGATTC---A--A-ATA-----CGGACTGACTGTTGA-------TGCTAAAGCA--------------GTCGCTGAAGATCATTTCATTATACCGAGTA--CAATTCTG--A---TAATGTA-TTT-----ATGTAATG-CTGTCAGTTTTAATCAGAAATGTTAAA--TCAAGTAAAGCCATGACAAAGACTGCCAGTTT--AGTGTTGTTGTTCTGTTCTATTGAAATGATnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncagtgattgattacaacttcgttggattggtatattgaatgattgatacttgattggtataatgattgattgacaatttcttgattgaaaacattgattgaataatgattgattgaaaacattgattgaattattgattgattcaaatacggactgactgttgatgctaaagcagtcgctgaagatcatttcattataccgagtacaattctgataatgtatttatgtaatgctgtcagttttaatcagaaatgttaaatcaagtaaagccatgacaaagactgccagtttagtgttgttgttctgttctattgaaatgataattccagcacttacaaccttaccctagtactgttgttttaattaggttttgcttgattataagccgaggttcaggattagttttaattatctcctcaaatgagtacattgaatactg
gi|6 : gtagtctcgctgtcatggtgcgtaataaaatgtcagcttgtggcggatgtcttcatgtatgtacgcatttttcatacatacatgaagacatatgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncagtgattgattAC--AATTATACGTCCT-TTTTG---AGCGC-CA--TTT---TGACGAACATTCT-AGAGACATCG--AAT-A----T-A-----------CCGATTCG-ACATTGA--------------TTGATC-GCAACATCGA---A-------AG-ATTGATTGATTGATGATTTATTGA-A-ATATTG--TGTCGG-ATTGATCCACTGAAATATT---GAT-GATTGA---T--------T-GAC-----ATACCCTTGATTGAAATATTGA-----TTGATTGC--TTGACACTTGA-TT-GATTGATTG---G--A-TTT-----TGGACTGACTGTTGA-------T-----------ACTAC---------------AG--CATTAC----TGCCCAAAAGTCGTTG-TA--GA--TAATGTA-TTG-----ATATAATA-CCGTCAGTTT----------------A--ACAAATAAAGCCATGACAAAGACCGCCAATAT--TGTGaattccagcacttacaaccttaccctagtactgttgttttaattaggttttgcttgattataagccgaggttcaggattagttttaattatctcctcaaatgagtacattgaatactg
gi|7 : aTGGCGGATGTCCGTATGTAT---CATCACTTTTGTTATTCACACATGAAGACACATGGCGCGAATTT-GCTTAAG-CCTGCCATGGATTTTGTTTCTTTCC-AGTTCCG-GGACCGAA-AATTAGCTTT-ATCCATGCATTG---A-AT---------GATTGACAT-AGATTAATTC--AA-----------------------------CACATTGA--------------TTGATTAAAAACGTTGATTTAGACATTCAT-ATTGATTG---------------A------TTGATTGTTAT-ATTGATTTACTGAAGAATT----AT---TTGA---A--------T-AAT-----TGG-------TT----TATAAA-----TTGATTG---------------TT-GAT
gi|8 : aACTGAAATATT---GAT-GATTAA---A--------T-GAT-----ATA-------CC----T-TTGA-----TAAA--GA--T---------A-TT-GATTGATTG---G--gttgc
gi|8 : tGTAGATCATTGCATTATATCTAATA--CAATGCTG--AAGTTAATGTA-TTG-----ATATATTG-CTGTCAGTTTTGATC--AAAGGTTTTA--ACAAAT-------------AGACCGCCAATAT--AGTGTTGCTGTTCTGTTCTATTGAAATAAtagatcattgcattatatctaatacaatgctgaagttaatgtattgatatattgctgtcagttttgatcaaaggttttaacaaatagaccgccaatatagtgttgctgttctgttctattgaaataa
gi|9 : tactgaaatattgatgattaaatgatatacctttgataaagatattgattgattgTCGGGCTT-ATTTA---GTTGAACC-ATTA---T--CGATCGATATTAGAGCCATCG---AT-A----TAA-----------T-GATACGCACATTGA--------------TTGATC-GGAATATCGA---A-------AT-ATTGATTG-----------------A-TTGTTAT-TGTTCGAATTGGTCCACTG-AATATT---GAT-GATTGA---A--------TCAAT-----ATA-------CC----T-TTGA-----TTGA
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|15 ): GGAGCAATGTCATCGGGTCGATTCCTGAAATTCACACGATTATGTATGGGAAATTTGC
Alignments
lowQualScore : 111111111111111111111
lowQualScore : 2222222 333333 222 1 111111111111111111111 1 2222 33333 2222 1 3333333333333 11 11 333333 444444444444444 1 8888888888888888888888888 22222 1 333333333 2222 1 1 11 2222 1 888888888888888 77777777777777777 11 222 222 11 3333 11 22 1111 1 1 7777777777 1 1 1 2222 11 111 22222222 6666666666666666666666 11 22222222222222 33333333333333333 555555555555555555555555555 2222222222222 11 2222222222222222222222222222222222222222 22222 3333333333333 1111111111111111 3333333333333333333333333333333 22222222 11111 11
lowQualScore : 1 0 5555555 888888 333 6 3 999999999999999999999 2 4444 44444 0 8888 2 3 1 7777777777777 00 88 222222 1 1 444444444444444 1 1 5 1 1 1 1 1 1 1 3333333333333333333333333 1 66666 1 1 5 1 888888888 77 1111 0 0 0 4 0 6 6 0 3 22 0 7 0 88 0 3 8888 3 44 333333333333333 33333333333333333 88 333 1 999 333 6 88 9999 00 00 7 6 9999 1 1 1 1 1 1 1 5 1 0 0 3 222 6666666666 11 0 2 3 0 0 2 3 0 3333 4 3 11 0 1 6 111 77 5 11111111 5 66666 77 1111111111111111111111 1 55 99999999999999 88 1 22222222222222222 888888888888888888888888888 1 5 9999999999999 2 777 11 8888888888888888888888888888888888888888 1 22222 6666666666666 5 5 8888888888888888 9999999999999999999999999999999 33 1 0 1 77 99999999 5 44444 5 0 99 33 77 0 66
lowQualScore : . . ....... ...... ... . . ..................... . .... ..... . .... . . . ............. .. .. ...... . . ............... . . . . . . . . . . ......................... . ..... . . . . ......... .. .... . . . . . . . . . .. . . . .. . . .... . .. ............... ................. .. ... . ... ... . .. .... .. .. . . .... . . . . . . . . . . . . ... .......... .. . . . . . . . . .... . . .. . . . ... .. . ........ . ..... .. ...................... . .. .............. .. . ................. ........................... . . ............. . ... .. ........................................ . ..... ............. . . ................ ............................... .. . . . .. ........ . ..... . . .. .. .. . ..
lowQualScore : 0 7 3333333 333333 333 7 3 333333333333333333333 0 3333 33333 7 3333 0 7 0 7777777777777 00 33 000000 0 0 555555555555555 0 0 5 0 0 0 0 0 0 0 0000000000000000000000000 0 00000 0 0 0 0 000000000 55 2222 5 2 2 2 2 7 7 7 3 00 7 3 7 33 7 7 3333 3 33 333333333333333 00000000000000000 33 333 0 333 333 7 33 7777 33 77 3 7 0000 0 0 0 0 0 0 0 0 0 7 0 2 888 8888888888 22 0 5 2 0 0 0 2 2 2222 2 2 00 8 0 7 777 11 7 88888888 7 66666 99 7777777777777777777777 6 77 44444444444444 66 4 22222222222222222 666666666666666666666666666 0 0 2222222222222 7 888 11 4444444444444444444444444444444444444444 0 22222 6666666666666 0 0 6666666666666666 6666666666666666666666666666666 44 0 1 0 99 66666666 7 33333 7 4 77 77 99 1 11
consensus : NTATATACTTAGAAAATACACAAGATCCATACACTGATACCAGTAAAANATCCACGTCACC-A-TCATTC------TTCATATA---TTGAACCAGCT-AT------------AC---GGC-ATAGTCAAGN---CTCAACA---GCCGCAATTTA----CATCACGCATTTCGCACAAGTTAGCGAATTANCTTCACTAATCATGCTACC-C--AATACGCAAGATCCATACACTGA--CAC--ATGGTAGTAAAACATCCACATCACCTATCATTCTTCATATACTGAACCANCTTNCAGCTATTCTACCGCCAANTTCAGNCTCAGTTCNAGCNGCAATTCANATCACGCATTTCGCACAGGTTAGNAAATNACCTTCACTAANCATGCTNCCCCTGAAAATACGCTAGATCCATACACTGATACTAGTAAAANATCCACATCACCTGCCATTNTTCATATACNGAACCAGCTATCGGCTATTCTGCANGCACATAGTTCAGCCTCAACNCAAGCTGCAATTTA----CATCACGCATTTCGCACAGGTTAGCGAATTACCTTCACTAACCATACTACCCCTACGCTACCAAACACTCGCGTTATTACGAATGTTGCTAAAACGGCAAT-CAATCCAGGNNCCGTCATTACCCGTAACGAATTATTATCCAAGCACACGCACA--CTTTCGTCAATCAGACCGTAGGCATATGGCCTAAGGTTCCCGTTCATTCAACCTCTTCCTCCATTATTCTTTATGCTACCTGTCGGACACTCAGA----AACT-TTTCGAA-----NGA-------CCTCGATGAAGAAAG--------GT--AGCGCCATCGCTTATATTTCTAC--TTGGC---AGTAAGCATNGGAGCA---ATTCATTGCATT--TACAACAT-TTCCACAACTTGTTTTGCCAGGGCCTT-ATATATATATATATACTATCCAGGAAACAAATCCTTG-CCTCATTTAAAACACNACGCATTGGATGCCTAGTTGGTATCNTCTTGTCCGATACTTCCCGGGTTTACTCNACATAGTCCATGACATGCTAGNACATACNCCTGACTATNCNTCTATCCAACTGGCGGTCTTNCTGTCACGGCGTTTAGC-AAAATGTTGTNNGCTTGTGGCGGATGTCCTCATGTAT---CGC----TTTGTTANGCATACATGAAGACATATGGC-CGAATTTTGCT-AAG-CCTGCCACGTATTCTGTTTCCTTCC-AG-TCCGTGGAC--AATAATTGGNCTT-ATTTA---ATCGA-CA-ATTT---T--CGATCGATAT-AGAGCCATCG--AAT-A----T-A-----------T-GATACGCACATTGA--------------TTGATC-GGAACATCGA---A-------AT-ATTGATTG---------------A-A-ATGTTG--TGTTNG-ATTGATC-----------CACTGAAATATT---GAT-GATTGA---A--------T-GA-----TATA-------TT----TATTGA-----TTGATTGA--T---------A-TT-GATTGATTG---G--A-NTA-----CGGACTGACTGTTGA-------TGCTACAGCATTACTAC-C-AAAAGTCGTTGTAGATCATTNCATTATACCNAATA--CAATGCTG--A--A--TAATGTA-TTG-----ATATAATG-CTGTCAGTTTTGATCAGAAATGTTTTA--ACAAGTAAAGCCATGACAAAGACCGCCAATAT--AGTGTTGTTGTTCTGTTCTATTGAAATAAT
Reference ( family-792 ) : NTATATACTTAGAAAATACACAAGATCCATACACTGATACCAGTAAAANATCCACGTCACC-A-TCATTC------TTCATATA---TTGAACCAGCT-AT------------AC---GGC-ATAGTCAAGN---CTCAACA---GCCGCAATTTA----CATCACGCATTTCGCACAAGTTAGCGAATTANCTTCACTAATCATGCTACC-C--AATACGCAAGATCCATACACTGA--CAC--ATGGTAGTAAAACATCCACATCACCTATCATTCTTCATATACTGAACCANCTTNCAGCTATTCTACCGCCAANTTCAGNCTCAGTTCNAGCNGCAATTCANATCACGCATTTCGCACAGGTTAGNAAATNACCTTCACTAANCATGCTNCCCCTGAAAATACGCTAGATCCATACACTGATACTAGTAAAANATCCACATCACCTGCCATTNTTCATATACNGAACCAGCTATCGGCTATTCTGCANGCACATAGTTCAGCCTCAACNCAAGCTGCAATTTA----CATCACGCATTTCGCACAGGTTAGCGAATTACCTTCACTAACCATACTACCCCTACGCTACCAAACACTCGCGTTATTACGAATGTTGCTAAAACGGCAAT-CAATCCAGGNNCCGTCATTACCCGTAACGAATTATTATCCAAGCACACGCACA--CTTTCGTCAATCAGACCGTAGGCATATGGCCTAAGGTTCCCGTTCATTCAACCTCTTCCTCCATTATTCTTTATGCTACCTGTCGGACACTCAGA----AACT-TTTCGAA-----NGA-------CCTCGATGAAGAAAG--------GT--AGCGCCATCGCTTATATTTCTAC--TTGGC---AGTAAGCATNGGAGCA---ATTCATTGCATT--TACAACAT-TTCCACAACTTGTTTTGCCAGGGCCTT-ATATATATATATATACTATCCAGGAAACAAATCCTTG-CCTCATTTAAAACACNACGCATTGGATGCCTAGTTGGTATCNTCTTGTCCGATACTTCCCGGGTTTACTCNACATAGTCCATGACATGCTAGNACATACNCCTGACTATNCNTCTATCCAACTGGCGGTCTTNCTGTCACGGCGTTTAGC-AAAATGTTGTNNGCTTGTGGCGGATGTCCTCATGTAT---CGC----TTTGTTANGCATACATGAAGACATATGGC-CGAATTTTGCT-AAG-CCTGCCACGTATTCTGTTTCCTTCC-AG-TCCGTGGAC--AATAATTGGNCTT-ATTTA---ATCGA-CA-ATTT---T--CGATCGATAT-AGAGCCATCG--AAT-A----T-A-----------T-GATACGCACATTGA--------------TTGATC-GGAACATCGA---A-------AT-ATTGATTG---------------A-A-ATGTTG--TGTTNG-ATTGATC-----------CACTGAAATATT---GAT-GATTGA---A--------T-GA-----TATA-------TT----TATTGA-----TTGATTGA--T---------A-TT-GATTGATTG---G--A-NTA-----CGGACTGACTGTTGA-------TGCTACAGCATTACTAC-C-AAAAGTCGTTGTAGATCATTNCATTATACCNAATA--CAATGCTG--A--A--TAATGTA-TTG-----ATATAATG-CTGTCAGTTTTGATCAGAAATGTTTTA--ACAAGTAAAGCCATGACAAAGACCGCCAATAT--AGTGTTGTTGTTCTGTTCTATTGAAATAAT
gi|1 : TATATACTTAGAAAATACACAAGATCCATACACTGATACCAGTAAAACATCCACATCACCTA-TCATTC------TTCATATAGTATTGAACCAGCT-ATCAGCTATTATACACTGTAGC-ATAGTTAAGT---CTCAATA---GCTGCAATCCA----CATCACACATTTTCCACAAGTTAGCAAATTACCTTCACTAATCATGCTACCACTGAATACGCAAATTCCATACACAGA--TAC--A----AGTAAAACATCCACATCATCTATCATTCTTTATATACTGAACCAGCTTTCAGCTATTCTACCGT--ATTTCAGACTCAATTCAAGCTGCAATTTACATCACACATTTCGCACAAGTTAGCAAATTACCTTCACTAAGCATGCTCCCCCTGAAAATACGCTAGATCCATACACTGATACTAGTAAAACATCCACATCACCTGCCATTCTTCATATACGGAACCAGCTATCGGCTATTCTGCATGTACATAGTTCAGCCTCAACG-AAGCTGCAATTTA----CATCACACAATTTGCACAGGTTAACAAATTACCTTCACTAATCATACTACCCCTACGCTACCAAACA--CGCGTTATTACGAATGTTGCTTAAACGGCAAT-CAATCTAGGCACCATCATTACCAGTAACGAATTGTTATCCAAGCACATGCACA--CTTTCGTCAATCAGACCGTAGGCTTATGGCCTAAGGTTCCTGTTCATTCAACCTCCTCCTCCATTACTCTTTATGCTATCTGTCGGACACTCAGA----AACT-TTTCAAA-----G----------CTCGCTGAAGAAAA--------GTTAAGC-CCATCGCTTATATTTCTAC--TTGGC---AGTAAGCATAGGAACAATTATTCATTGCATT--TACAACATCTTCCACAACTTTTTTTGTCAGGGCCTTAATATATATATATATACTATCCAGGAAA--------------CATTTAAAACACAACGCATTGGATGCTTAGTTGGTATCCTCTTGTCCGATACTTCCCGGATTTACTCTACATAGTCCATGACATGTTAGCACATACCCTTGACTATCCATCTATCTAACTGGCAGTCTTCCTGTCACGGCGTTTAGCAAAAATGTTGCCCGCTTGTGGCGGATGTCCTCATGTAT----G-----TTTGTTAGGCATACATGAAGACATATGGC-CGAATTTTGCT-AAG-CCTTCCACATATTCTGTTTCCTTCCAAG-TCTGTGGAC--AATAATTGGACTT-ATTTA---ATCGA-CA-ATTT---T--CGATTGATAT-AGAGCCATCG--AAT-A----TAA-----------T-GATACGCATATTGG--------------TTGATC-GGAACATCAA---T-------AT-ATTAATAG---------------A-A-ATGTTG--TGTTCG-ATTGATT-----------CACTGAAATATT---GAT-GATTGA---A--------T-GA-----TATA-------TT----TATTGA-----TAGCTTGA--C---------ACTT-GATTGATTG---G--A-TTT-----TGGACTGACTTTTGA-------TGTTTCAGCATTACTAC-C-AAAAGTCGTGGTAGAGCATTGCATTATATCTAACG--CAATGCTC--A--AGTTAATGTA-TTG-----ATATATTG-CTGTCAGTTTTGATC--GAATGTTTTA--AGAAATAAAGCCATGACAAAGACCGCCAATATACAGTGTCGCTGCTCTGTTCTATTGAAATAAT
gi|10 : tGTATTGATACTC-AAACGTCGTTGTAGATCATTTCATTATACTAAATA--CAATACTG--ATAA--TAATGTA-TTG-----ATATAATGACTGTCCGTTTTAATCAGAAATGTTTTATTAAGAGTAAAGCCATGACAAAGACTGCCAATAT--AG---TGTTGTTCTGTT
gi|11 : taatTCTG-ATTGATTGGTTACATACACACTGACA-------GAT-GATTGA---T--------T-GATTGGTTACA-------TA----CAT--A-----CTGACAGA--TG--------A-TT-GATTGATTG---GTTACATA-----CACACTGAC
gi|12 : taccggatTTCATTG---A--A-TGA-----TGGTTTGATTGTTGA-------TCTTGCATCATTACTACTC-AAAAGTCAGTGTAGATCAagatgcacgcctgattctgattggttgattggacgttgtac
gi|13 : gtCATTGCATT--TACAAC---TTCCACAACTTGTTTTGCCAGGGCCTT--TAAA-ATATGTATACTACCCAGGAAACAAATCCTTG-CTTCATTTAAAACcgcaatggattcaaacagtatttcagaacaacagtatgacaa
gi|14 : ATTTAGC-C-AATTTTGCT-AAAACCTGCCTCATATTCTGTT--------------GTGGCC--AATAACTGGCTTTCATTTA---ATCAA-CACATT--------GATTGA
gi|17 : CCATGATAAAGACTGTCAGTTT--AGTGTTGTTATTCTG
gi|18 : AATAT--AGTGTTGTCGTTCTGCTCTATTGAAATAAT
gi|2 : CTTAACTCAAGCTGCAATTTA----CATCACACATTTCGCGCACGTTAGCAAATTACCTTCACTAACCATGCTACACTTACGCTACCCAACACTCGCATTATTACGTATGTTGCTAAAATGGCAATACAATCCAGGGTCCGTCATT-CCCGTAATGAATTATTATCCAAGCACACGAACAAACTTTCATCAATCAGACCTTAGGCATATGGCCTAAGGTTCCCGTTCATCCAACCTCTTCCTCCATTATTCTTTATGCTACCTGTCAGACACTCAGATTTAAGCT-TTTTTAA-----AGA-------CATTGATTAAGGGAG---------T--ACTGTCATTGGTTCGATTCCTAAAATTCACTCTATTATTCATTG---CA---ATT--TTGCAATAATAAAA-ATATTCCACAACTTGTTTT------------ATATATATACATGTACTCTCCAGGAAACAAATCCTTAACCTCATTTACAACATCACGCATTGGATGCCTAGTTAGTATCATCTTGTCTGATACTTCTCGGGTTTACTCAACATAGTCCATGACATGCTAGAACATATACCTAACTATGCTTCTATTCAA-TAGCGGTCTTTCTGTCATGGCGTTTAGC-AAAATGCTGTGTGCTTGTGGCGGATGTCTTCATGTAT----G-----TTTGTTAGGTATACATGAAGACATATGGC-CGATATTTACA-AAG-CCTGCCACATATTCTATTTCCTTCC-AGGTCTGTTGAC--AATAGTTGGACTT-ATTTA---ATCGA-CA-ATTA---T--CGATCGATAT-AGAGCCATCGAAAAT-ACTGAT-ACGCACATTGATT-GATCAGAACATTGAAATNNNNNNNNNNNNNNNNN-NNNNNNNNNN---N-------NN-NNNNNNNN---------------N-A-ACGTTT--TGTTGG-ATTGATC-----------CACTGAAATATTTATGATTGATTGATATACCTTTGGTT-GA-----GATA-------TT----GATCGA-----TTGATTGA--C---------A-TTTGATTGATTGATTG--A-CTGAAATTTGGACTGATTGTTGAGTGTTGATACTACAGTATTACTAC-CCAAAAGTCGTGGTAGATCATTG-ATTATATAAAATA--CAATGCTGAAA--A--TAATGTA-TTG-----ATATAAAG-CTCTCAGTTTTGATT--AAATGTTTTA--ACAAATAAAGCCATGGCAGAGACTGTCCATAT--AGTGTTGCTGTTCTGTTCTATTAATATAAT
gi|3 : tagcattgataatg--AATACACAAGATCCATACACTAA--CAC--CTGGTAGTAAAACATCCACATCACCTATCATTCTTCATATACTGAATCATCTTACA----------TGCCAAGTTCAGCCTCAGT-CTAGCAGCAATTCAAATCACGCATTTCGCACAGGTTAGAAAATGACCTTTACTAATCATGCTACCCTTGAAAATACG-------------------------AAAGATCCATAT-----ATCATTATTTATATACTGAACCAGCTATCGGCTATTCT-CAAGCAC---------CCTCAACATGAGCCGCAATTTA----CATCACGCATTTCGCACAGGTTATCTAATTAACGTCACTAATCACACtaaagctctatcatctatacattaatatacctcacactatcatactatttcttttaaat
gi|3 : tatatacttacaaAAAGATCCATAT-----A-TCATTA------TTTATATA---CTGAACCAGCT-AT-------------C---GGCTATTCTCAAGCACCCTCAACATGAGCCGCAATTTA----CATCACGCATTTCGCACAGGTTATCTAATTAACGTCACTAATC-------------ACACGCAAGATCCATACATTGAATCACTGATAATAGTAAAACgcaagatccatacattgaatcactgataatagtaaaactcaaactacaatttaattacatcaccatttcgcacaagtgggcgaattatcttcactaaccatactacccctacgctaccaaacactcgcgttattacaatgttgctaaaatggcaatcaatccaggtcccatcattacccgcaacgaattattacacaagcacatgcacactttcgtcaatcattccgtaggcatatggcctaagattcctgttcattcaccctcttccttcattattctttatgctacctgtctgactctcagaaaccattttgaatccattgattaatatcctcgatgaaaaaagggtaagcagtagcacatcacatataattctccttggcaggaagcatgggagcaat
gi|3 : tatatacttacaaaatacacaagatccatacactaacacctggtagtaaaacatccacatcacctatcattcttcatatactgaatcatcttacatgccaagttcagcctcagtctagcagcaattcaaatcacgcatttcgcacaggttagaaaatgacctttactaatcatgctacccttgaaaatacgACGTCACT-AATCACACGCAAGATCCATACA---TTGAATCA-CTGAT------------A--------ATAGT-AAAA---CTCAA-----ACTACAATTTAATTACATCAC-CATTTCGCACAAGTGGGCGAATTATCTTCACTAACCATACTACC-C---CTACGCTA---CCAAACACTtcaaactacaatttaattacatcaccatttcgcacaagtgggcgaattatcttcactaaccatactacccctacgctaccaaacactcgcgttattacaatgttgctaaaatggcaatcaatccaggtcccatcattacccgcaacgaattattacacaagcacatgcacactttcgtcaatcattccgtaggcatatggcctaagattcctgttcattcaccctcttccttcattattctttatgctacctgtctgactctcagaaaccattttgaatccattgattaatatcctcgatgaaaaaagggtaagcagtagcacatcacatataattctccttggcaggaagcatgggagcaat
gi|3 : tatatacttacaaaatacacaagatccatacactaacacctggtagtaaaacatccacatcacctatcattcttcatatactgaatcatcttacatgccaagttcagcctcagtctagcagcaattcaaatcacgcatttcgcacaggttagaaaatgacctttactaatcatgctacccttgaaaatacgaaagatccatatatcattatttatatactgaaccagctatcggctattctcaagcaccctcaacatgagccgcaatttacatcacgcatttcgcacaggttatctaattaAACTCAAACTACAATTTAATTACATCAC-CATTTCGCACAAGTGGGCGAATTATCTTCACTAACCATACTACCCCTACGCTACCAAACACTCGCGTTATTAC-AATGTTGCTAAAATGGCAAT-CAATCCAGGTCCCATCATTACCCGCAACGAATTATTACACAAGCACATGCACA--CTTTCGTCAATCATTCCGTAGGCATATGGCCTAAGATTCCTGTTCATTCACCCTCTTCCTTCATTATTCTTTATGCTACCTGTCTGACTCTCAGA----AACCATTTTGAATCCATTGATTAATATCCTCGATGAAAAAAGGGTAAGCAGT--AGCA-CATCACATATAATTCTCC--TTGGC---AGGAAGCATGGGAGCA---ATcgcgttattacaatgttgctaaaatggcaatcaatccaggtcccatcattacccgcaacgaattattacacaagcacatgcacactttcgtcaatcattccgtaggcatatggcctaagattcctgttcattcaccctcttccttcattattctttatgctacctgtctgactctcagaaaccattttgaatccattgattaatatcctcgatgaaaaaagggtaagcagtagcacatcacatataattctccttggcaggaagcatgggagcaat
gi|4 : tatatacttacaaaatacacaagatccatacactaacacctggtagtaaaacatccacatcacctatcattcttcatatactgaatcatcttacatgccaagttcagcctcagtctagcagcaattcaaatcacgcatttcgcacaggttagaaaatgacctttactaatcatgctacccttgaaaatacgaaagatccatatatcattatttatatactgaaccagctatcggctattctcaagcaccctcaacatgagccgcaatttacatcacgcatttcgcacaggttatctaattaacgtcactaatcacacgcaagatccatacattgaatcactgataatagtaaGTGTTTAGC-AAAATGTTGTAAGCTTGTGGCGG
gi|4 : ACTGG--------------TTGATT-GGAACATTAA---T-------AA-ATTGATTgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatgaattgactggttgattggaacattaataaattgattcattagaactttgttggattggtatattgaatgattgatacttgattgattggtataatgattgattgaccatttcttgattgaaaacattgattgaatcaggattgattgaaaacattgattgaattattgattgattcaaatacggactgactgttgatactaaaacagtcgctgtagatcatttcgttataccaagtacaattctgataatgtaattacatgtatgtaatgctctcagttttaatcagaaatgctaaattaagtgaagccatgacaaagactgtcagtttagtgctgttgttctgttctattgaaatgataattccagcacgtataaccctaccctagtactgatgttttaattatgctttgcttgattataagccgaggttcaggattagtcttaattatctgctcaagtgagtacattgaaaactgg
gi|4 : gtgtttagcaaaatgttgtaagcttgtggcgggnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatgaattgT---T--GGATTGGTAT-A------TTG--AATGA----T-------------T-GATAC-----TTGA--------------TTGATT-GG--TAT------A-------ATGATTGATTG---------------A-CCAT-TT-----CTTG-ATTGA------------------AAACATT---GAT----TGA---A--------T-CA-----GG-A-------TT----GATTGAAAACATTGATTGAATT---------A-TT-GATTGATTC---A--A-ATA-----CGGACTGACTGTTGA-------TACTAAAACA--------------GTCGCTGTAGATCATTTCGTTATACCAAGTA--CAATTCTG--A-----TAATGTAATTACATGTATGTAATG-CTCTCAGTTTTAATCAGAAATGCTAAA--TTAAGTGAAGCCATGACAAAGACTGTCAGTTT--AGTGCTGTTGTTCTGTTCTATTGAAATGATcattagaactttgttggattggtatattgaatgattgatacttgattgattggtataatgattgattgaccatttcttgattgaaaacattgattgaatcaggattgattgaaaacattgattgaattattgattgattcaaatacggactgactgttgatactaaaacagtcgctgtagatcatttcgttataccaagtacaattctgataatgtaattacatgtatgtaatgctctcagttttaatcagaaatgctaaattaagtgaagccatgacaaagactgtcagtttagtgctgttgttctgttctattgaaatgataattccagcacgtataaccctaccctagtactgatgttttaattatgctttgcttgattataagccgaggttcaggattagtcttaattatctgctcaagtgagtacattgaaaactgg
gi|5 : gtgtttagcaaaatgttgtaagcttgtggcgggnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatgaattgactggttgattggaacattaataaattgattcattagaactttgGTCTCGCTGTCATGGTGCGTAAT-AAAATGT---CAGCTTGTGGCGGATGTCTTCATGTATGTACGCA---TTTTTCATACATACATGAAGACATATGaattccagcacgtataaccctaccctagtactgatgttttaattatgctttgcttgattataagccgaggttcaggattagtcttaattatctgctcaagtgagtacattgaaaactgg
gi|5 : gtaA-CA-ACTTCGTT--GGATTGGTAT-A------TTG--AATGA----T-------------T-GATAC-----TTGA--------------TTGGT-------AT------A-------ATGATTGATTG---------------ACA-AT-TT-----CTTG-ATTGA------------------AAACATT---GAT----TGA---A--------T-AA-----TG-A-------TT----GATTGAAAACATTGATTGAATT---------A-TT-GATTGATTC---A--A-ATA-----CGGACTGACTGTTGA-------TGCTAAAGCA--------------GTCGCTGAAGATCATTTCATTATACCGAGTA--CAATTCTG--A-----TAATGTA-TTT-----ATGTAATG-CTGTCAGTTTTAATCAGAAATGTTAAA--TCAAGTAAAGCCATGACAAAGACTGCCAGTTT--AGTGTTGTTGTTCTGTTCTATTGAAATGATnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncagtgattgattacaacttcgttggattggtatattgaatgattgatacttgattggtataatgattgattgacaatttcttgattgaaaacattgattgaataatgattgattgaaaacattgattgaattattgattgattcaaatacggactgactgttgatgctaaagcagtcgctgaagatcatttcattataccgagtacaattctgataatgtatttatgtaatgctgtcagttttaatcagaaatgttaaatcaagtaaagccatgacaaagactgccagtttagtgttgttgttctgttctattgaaatgataattccagcacttacaaccttaccctagtactgttgttttaattaggttttgcttgattataagccgaggttcaggattagttttaattatctcctcaaatgagtacattgaatactg
gi|6 : gtagtctcgctgtcatggtgcgtaataaaatgtcagcttgtggcggatgtcttcatgtatgtacgcatttttcatacatacatgaagacatatgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncagtgattgattAC--AATTATACGTCCT-TTTTG---AGCGC-CA--TTT---TGACGAACATTCT-AGAGACATCG--AAT-A----T-A-----------CCGATTCG-ACATTGA--------------TTGATC-GCAACATCGA---A-------AG-ATTGATTGATTGATGATTTATTGA-A-ATATTG--TGTCGG-ATTGATC-----------CACTGAAATATT---GAT-GATTGA---T--------T-GA-----CATACCCTTGATTGAAATATTGA-----TTGATTGC--TTGACACTTGA-TT-GATTGATTG---G--A-TTT-----TGGACTGACTGTTGA-------T-----------ACTAC---------------AG--CATTAC----TGCCCAAAAGTCGTTG-TA--G--A--TAATGTA-TTG-----ATATAATA-CCGTCAGTTT----------------A--ACAAATAAAGCCATGACAAAGACCGCCAATAT--TGTGaattccagcacttacaaccttaccctagtactgttgttttaattaggttttgcttgattataagccgaggttcaggattagttttaattatctcctcaaatgagtacattgaatactg
gi|7 : aTGGCGGATGTCCGTATGTAT---CATCACTTTTGTTATTCACACATGAAGACACATGGCGCGAATTT-GCTTAAG-CCTGCCATGGATTTTGTTTCTTTCC-AGTTCCG-GGACCGAA-AATTAGCTTT-ATCCATGCATTG---A-AT---------GATTGACAT-AGATTAATTC--AA-----------------------------CACATTGA--------------TTGATTAAAAACGTTGATTTAGACATTCAT-ATTGATTG---------------A------TTGATTGTTAT-ATTGATT-----------TACTGAAGAATT----AT---TTGA---A--------T-AA-----TTGG-------TT----TATAAA-----TTGATTG---------------TT-GAT
gi|8 : aACTGAAATATT---GAT-GATTAA---A--------T-GA-----TATA-------CC----T-TTGA-----TAAA--GA--T---------A-TT-GATTGATTG---G--gttgc
gi|8 : tGTAGATCATTGCATTATATCTAATA--CAATGCTG--A--AGTTAATGTA-TTG-----ATATATTG-CTGTCAGTTTTGATC--AAAGGTTTTA--ACAAAT-------------AGACCGCCAATAT--AGTGTTGCTGTTCTGTTCTATTGAAATAAtagatcattgcattatatctaatacaatgctgaagttaatgtattgatatattgctgtcagttttgatcaaaggttttaacaaatagaccgccaatatagtgttgctgttctgttctattgaaataa
gi|9 : tactgaaatattgatgattaaatgatatacctttgataaagatattgattgattgTCGGGCTT-ATTTA---GTTGAACC-ATTA---T--CGATCGATATTAGAGCCATCG---AT-A----TAA-----------T-GATACGCACATTGA--------------TTGATC-GGAATATCGA---A-------AT-ATTGATTG-----------------A-TTGTTAT-TGTTCGAATTGGTC-----------CACTG-AATATT---GAT-GATTGA---A--------TCAA-----TATA-------CC----T-TTGA-----TTGA
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|15 ): GGAGCAATGTCATCGGGTCGATTCCTGAAATTCACACGATTATGTATGGGAAATTTGC
Unaligned ( gi|16 ): ATAACCTTTGATTGATTGATTGATTGATAACCTTTGATTGATTGATTGATT
Alignments
lowQualScore : 111111111111111111111
lowQualScore : 2222222 333333 222 1 111111111111111111111 1 2222 33333 2222 1 3333333333333 11 11 333333 444444444444444 1 8888888888888888888888888 22222 1 333333333 2222 1 1 11 2222 1 888888888888888 77777777777777777 11 222 222 11 3333 11 22 1111 1 1 7777777777 1 1 1 2222 11 111 22222222 6666666666666666666666 11 22222222222222 33333333333333333 555555555555555555555555555 2222222222222 11 2222222222222222222222222222222222222222 22222 3333333333333 1111111111111111 3333333333333333333333333333333 22222222 11111 11
lowQualScore : 1 0 5555555 888888 333 6 3 999999999999999999999 2 4444 44444 0 8888 2 3 1 7777777777777 00 88 222222 1 1 444444444444444 1 1 5 1 1 1 1 1 1 1 3333333333333333333333333 1 66666 1 1 5 1 888888888 77 1111 0 0 0 4 0 6 6 0 3 22 0 7 0 88 0 3 8888 3 44 333333333333333 33333333333333333 88 333 1 999 333 6 88 9999 00 00 7 6 9999 1 1 1 1 1 1 1 5 1 0 0 3 222 6666666666 11 0 2 3 0 0 2 3 0 3333 4 3 11 0 1 6 111 77 5 11111111 5 66666 77 1111111111111111111111 1 55 99999999999999 88 1 22222222222222222 888888888888888888888888888 1 5 9999999999999 2 777 11 8888888888888888888888888888888888888888 1 22222 6666666666666 5 5 8888888888888888 9999999999999999999999999999999 33 1 0 1 77 99999999 5 44444 5 0 99 33 77 0 66
lowQualScore : . . ....... ...... ... . . ..................... . .... ..... . .... . . . ............. .. .. ...... . . ............... . . . . . . . . . . ......................... . ..... . . . . ......... .. .... . . . . . . . . . .. . . . .. . . .... . .. ............... ................. .. ... . ... ... . .. .... .. .. . . .... . . . . . . . . . . . . ... .......... .. . . . . . . . . .... . . .. . . . ... .. . ........ . ..... .. ...................... . .. .............. .. . ................. ........................... . . ............. . ... .. ........................................ . ..... ............. . . ................ ............................... .. . . . .. ........ . ..... . . .. .. .. . ..
lowQualScore : 0 7 3333333 333333 333 7 3 333333333333333333333 0 3333 33333 7 3333 0 7 0 7777777777777 00 33 000000 0 0 555555555555555 0 0 5 0 0 0 0 0 0 0 0000000000000000000000000 0 00000 0 0 0 0 000000000 55 2222 5 2 2 2 2 7 7 7 3 00 7 3 7 33 7 7 3333 3 33 333333333333333 00000000000000000 33 333 0 333 333 7 33 7777 33 77 3 7 0000 0 0 0 0 0 0 0 0 0 7 0 2 888 8888888888 22 0 5 2 0 0 0 2 2 2222 2 2 00 8 0 7 777 11 7 88888888 7 66666 99 7777777777777777777777 6 77 44444444444444 66 4 22222222222222222 666666666666666666666666666 0 0 2222222222222 7 888 11 4444444444444444444444444444444444444444 0 22222 6666666666666 0 0 6666666666666666 6666666666666666666666666666666 44 0 1 0 99 66666666 7 33333 7 4 77 77 99 1 11
consensus : NTATATACTTAGAAAATACACAAGATCCATACACTGATACCAGTAAAANATCCACGTCACC-A-TCATTC------TTCATATA---TTGAACCAGCT-AT------------AC---GGC-ATAGTCAAGN---CTCAACA---GCCGCAATTTA----CATCACGCATTTCGCACAAGTTAGCGAATTANCTTCACTAATCATGCTACC-C--AATACGCAAGATCCATACACTGA--CAC--ATGGTAGTAAAACATCCACATCACCTATCATTCTTCATATACTGAACCANCTTNCAGCTATTCTACCGCCAANTTCAGNCTCAGTTCNAGCNGCAATTCANATCACGCATTTCGCACAGGTTAGNAAATNACCTTCACTAANCATGCTNCCCCTGAAAATACGCTAGATCCATACACTGATACTAGTAAAANATCCACATCACCTGCCATTNTTCATATACNGAACCAGCTATCGGCTATTCTGCANGCACATAGTTCAGCCTCAACNCAAGCTGCAATTTA----CATCACGCATTTCGCACAGGTTAGCGAATTACCTTCACTAACCATACTACCCCTACGCTACCAAACACTCGCGTTATTACGAATGTTGCTAAAACGGCAAT-CAATCCAGGNNCCGTCATTACCCGTAACGAATTATTATCCAAGCACACGCACA--CTTTCGTCAATCAGACCGTAGGCATATGGCCTAAGGTTCCCGTTCATTCAACCTCTTCCTCCATTATTCTTTATGCTACCTGTCGGACACTCAGA----AACT-TTTCGAA-----NGA-------CCTCGATGAAGAAAG--------GT--AGCGCCATCGCTTATATTTCTAC--TTGGC---AGTAAGCATNGGAGCA---ATTCATTGCATT--TACAACAT-TTCCACAACTTGTTTTGCCAGGGCCTT-ATATATATATATATACTATCCAGGAAACAAATCCTTG-CCTCATTTAAAACACNACGCATTGGATGCCTAGTTGGTATCNTCTTGTCCGATACTTCCCGGGTTTACTCNACATAGTCCATGACATGCTAGNACATACNCCTGACTATNCNTCTATCCAACTGGCGGTCTTNCTGTCACGGCGTTTAGC-AAAATGTTGTNNGCTTGTGGCGGATGTCCTCATGTAT---CGC----TTTGTTANGCATACATGAAGACATATGGC-CGAATTTTGCT-AAG-CCTGCCACGTATTCTGTTTCCTTCC-AG-TCCGTGGAC--AATAATTGGNCTT-ATTTA---ATCGA-CA-ATTT---T--CGATCGATAT-AGAGCCATCG--AAT-A----T-A-----------T-GATACGCACATTGA--------------TTGATC-GGAACATCGA---A-------AT-ATTGATTG---------------A-A-ATGTTG--TGTTNG-ATTGATC-----------CACTGAAATATT---GAT-GATTGA---A--------T-GA-----TATA-------TT----TATTGA-----TTGATTGA--T---------A-TT-GATTGATTG---G--A-NTA-----CGGACTGACTGTTGA-------TGCTACAGCATTACTAC-C-AAAAGTCGTTGTAGATCATTNCATTATACCNAATA--CAATGCTG--A--A--TAATGTA-TTG-----ATATAATG-CTGTCAGTTTTGATCAGAAATGTTTTA--ACAAGTAAAGCCATGACAAAGACCGCCAATAT--AGTGTTGTTGTTCTGTTCTATTGAAATAAT
Reference ( family-792 ) : NTATATACTTAGAAAATACACAAGATCCATACACTGATACCAGTAAAANATCCACGTCACC-A-TCATTC------TTCATATA---TTGAACCAGCT-AT------------AC---GGC-ATAGTCAAGN---CTCAACA---GCCGCAATTTA----CATCACGCATTTCGCACAAGTTAGCGAATTANCTTCACTAATCATGCTACC-C--AATACGCAAGATCCATACACTGA--CAC--ATGGTAGTAAAACATCCACATCACCTATCATTCTTCATATACTGAACCANCTTNCAGCTATTCTACCGCCAANTTCAGNCTCAGTTCNAGCNGCAATTCANATCACGCATTTCGCACAGGTTAGNAAATNACCTTCACTAANCATGCTNCCCCTGAAAATACGCTAGATCCATACACTGATACTAGTAAAANATCCACATCACCTGCCATTNTTCATATACNGAACCAGCTATCGGCTATTCTGCANGCACATAGTTCAGCCTCAACNCAAGCTGCAATTTA----CATCACGCATTTCGCACAGGTTAGCGAATTACCTTCACTAACCATACTACCCCTACGCTACCAAACACTCGCGTTATTACGAATGTTGCTAAAACGGCAAT-CAATCCAGGNNCCGTCATTACCCGTAACGAATTATTATCCAAGCACACGCACA--CTTTCGTCAATCAGACCGTAGGCATATGGCCTAAGGTTCCCGTTCATTCAACCTCTTCCTCCATTATTCTTTATGCTACCTGTCGGACACTCAGA----AACT-TTTCGAA-----NGA-------CCTCGATGAAGAAAG--------GT--AGCGCCATCGCTTATATTTCTAC--TTGGC---AGTAAGCATNGGAGCA---ATTCATTGCATT--TACAACAT-TTCCACAACTTGTTTTGCCAGGGCCTT-ATATATATATATATACTATCCAGGAAACAAATCCTTG-CCTCATTTAAAACACNACGCATTGGATGCCTAGTTGGTATCNTCTTGTCCGATACTTCCCGGGTTTACTCNACATAGTCCATGACATGCTAGNACATACNCCTGACTATNCNTCTATCCAACTGGCGGTCTTNCTGTCACGGCGTTTAGC-AAAATGTTGTNNGCTTGTGGCGGATGTCCTCATGTAT---CGC----TTTGTTANGCATACATGAAGACATATGGC-CGAATTTTGCT-AAG-CCTGCCACGTATTCTGTTTCCTTCC-AG-TCCGTGGAC--AATAATTGGNCTT-ATTTA---ATCGA-CA-ATTT---T--CGATCGATAT-AGAGCCATCG--AAT-A----T-A-----------T-GATACGCACATTGA--------------TTGATC-GGAACATCGA---A-------AT-ATTGATTG---------------A-A-ATGTTG--TGTTNG-ATTGATC-----------CACTGAAATATT---GAT-GATTGA---A--------T-GA-----TATA-------TT----TATTGA-----TTGATTGA--T---------A-TT-GATTGATTG---G--A-NTA-----CGGACTGACTGTTGA-------TGCTACAGCATTACTAC-C-AAAAGTCGTTGTAGATCATTNCATTATACCNAATA--CAATGCTG--A--A--TAATGTA-TTG-----ATATAATG-CTGTCAGTTTTGATCAGAAATGTTTTA--ACAAGTAAAGCCATGACAAAGACCGCCAATAT--AGTGTTGTTGTTCTGTTCTATTGAAATAAT
gi|1 : TATATACTTAGAAAATACACAAGATCCATACACTGATACCAGTAAAACATCCACATCACCTA-TCATTC------TTCATATAGTATTGAACCAGCT-ATCAGCTATTATACACTGTAGC-ATAGTTAAGT---CTCAATA---GCTGCAATCCA----CATCACACATTTTCCACAAGTTAGCAAATTACCTTCACTAATCATGCTACCACTGAATACGCAAATTCCATACACAGA--TAC--A----AGTAAAACATCCACATCATCTATCATTCTTTATATACTGAACCAGCTTTCAGCTATTCTACCGT--ATTTCAGACTCAATTCAAGCTGCAATTTACATCACACATTTCGCACAAGTTAGCAAATTACCTTCACTAAGCATGCTCCCCCTGAAAATACGCTAGATCCATACACTGATACTAGTAAAACATCCACATCACCTGCCATTCTTCATATACGGAACCAGCTATCGGCTATTCTGCATGTACATAGTTCAGCCTCAACG-AAGCTGCAATTTA----CATCACACAATTTGCACAGGTTAACAAATTACCTTCACTAATCATACTACCCCTACGCTACCAAACA--CGCGTTATTACGAATGTTGCTTAAACGGCAAT-CAATCTAGGCACCATCATTACCAGTAACGAATTGTTATCCAAGCACATGCACA--CTTTCGTCAATCAGACCGTAGGCTTATGGCCTAAGGTTCCTGTTCATTCAACCTCCTCCTCCATTACTCTTTATGCTATCTGTCGGACACTCAGA----AACT-TTTCAAA-----G----------CTCGCTGAAGAAAA--------GTTAAGC-CCATCGCTTATATTTCTAC--TTGGC---AGTAAGCATAGGAACAATTATTCATTGCATT--TACAACATCTTCCACAACTTTTTTTGTCAGGGCCTTAATATATATATATATACTATCCAGGAAA--------------CATTTAAAACACAACGCATTGGATGCTTAGTTGGTATCCTCTTGTCCGATACTTCCCGGATTTACTCTACATAGTCCATGACATGTTAGCACATACCCTTGACTATCCATCTATCTAACTGGCAGTCTTCCTGTCACGGCGTTTAGCAAAAATGTTGCCCGCTTGTGGCGGATGTCCTCATGTAT----G-----TTTGTTAGGCATACATGAAGACATATGGC-CGAATTTTGCT-AAG-CCTTCCACATATTCTGTTTCCTTCCAAG-TCTGTGGAC--AATAATTGGACTT-ATTTA---ATCGA-CA-ATTT---T--CGATTGATAT-AGAGCCATCG--AAT-A----TAA-----------T-GATACGCATATTGG--------------TTGATC-GGAACATCAA---T-------AT-ATTAATAG---------------A-A-ATGTTG--TGTTCG-ATTGATT-----------CACTGAAATATT---GAT-GATTGA---A--------T-GA-----TATA-------TT----TATTGA-----TAGCTTGA--C---------ACTT-GATTGATTG---G--A-TTT-----TGGACTGACTTTTGA-------TGTTTCAGCATTACTAC-C-AAAAGTCGTGGTAGAGCATTGCATTATATCTAACG--CAATGCTC--A--AGTTAATGTA-TTG-----ATATATTG-CTGTCAGTTTTGATC--GAATGTTTTA--AGAAATAAAGCCATGACAAAGACCGCCAATATACAGTGTCGCTGCTCTGTTCTATTGAAATAAT
gi|10 : tGTATTGATACTC-AAACGTCGTTGTAGATCATTTCATTATACTAAATA--CAATACTG--ATAA--TAATGTA-TTG-----ATATAATGACTGTCCGTTTTAATCAGAAATGTTTTATTAAGAGTAAAGCCATGACAAAGACTGCCAATAT--AG---TGTTGTTCTGTT
gi|11 : taatTCTG-ATTGATTGGTTACATACACACTGACA-------GAT-GATTGA---T--------T-GATTGGTTACA-------TA----CAT--A-----CTGACAGA--TG--------A-TT-GATTGATTG---GTTACATA-----CACACTGAC
gi|12 : taccggatTTCATTG---A--A-TGA-----TGGTTTGATTGTTGA-------TCTTGCATCATTACTACTC-AAAAGTCAGTGTAGATCAagatgcacgcctgattctgattggttgattggacgttgtac
gi|13 : gtCATTGCATT--TACAAC---TTCCACAACTTGTTTTGCCAGGGCCTT--TAAA-ATATGTATACTACCCAGGAAACAAATCCTTG-CTTCATTTAAAACcgcaatggattcaaacagtatttcagaacaacagtatgacaa
gi|14 : ATTTAGC-C-AATTTTGCT-AAAACCTGCCTCATATTCTGTT--------------GTGGCC--AATAACTGGCTTTCATTTA---ATCAA-CACATT--------GATTGA
gi|17 : CCATGATAAAGACTGTCAGTTT--AGTGTTGTTATTCTG
gi|18 : AATAT--AGTGTTGTCGTTCTGCTCTATTGAAATAAT
gi|2 : CTTAACTCAAGCTGCAATTTA----CATCACACATTTCGCGCACGTTAGCAAATTACCTTCACTAACCATGCTACACTTACGCTACCCAACACTCGCATTATTACGTATGTTGCTAAAATGGCAATACAATCCAGGGTCCGTCATT-CCCGTAATGAATTATTATCCAAGCACACGAACAAACTTTCATCAATCAGACCTTAGGCATATGGCCTAAGGTTCCCGTTCATCCAACCTCTTCCTCCATTATTCTTTATGCTACCTGTCAGACACTCAGATTTAAGCT-TTTTTAA-----AGA-------CATTGATTAAGGGAG---------T--ACTGTCATTGGTTCGATTCCTAAAATTCACTCTATTATTCATTG---CA---ATT--TTGCAATAATAAAA-ATATTCCACAACTTGTTTT------------ATATATATACATGTACTCTCCAGGAAACAAATCCTTAACCTCATTTACAACATCACGCATTGGATGCCTAGTTAGTATCATCTTGTCTGATACTTCTCGGGTTTACTCAACATAGTCCATGACATGCTAGAACATATACCTAACTATGCTTCTATTCAA-TAGCGGTCTTTCTGTCATGGCGTTTAGC-AAAATGCTGTGTGCTTGTGGCGGATGTCTTCATGTAT----G-----TTTGTTAGGTATACATGAAGACATATGGC-CGATATTTACA-AAG-CCTGCCACATATTCTATTTCCTTCC-AGGTCTGTTGAC--AATAGTTGGACTT-ATTTA---ATCGA-CA-ATTA---T--CGATCGATAT-AGAGCCATCGAAAAT-ACTGAT-ACGCACATTGATT-GATCAGAACATTGAAATNNNNNNNNNNNNNNNNN-NNNNNNNNNN---N-------NN-NNNNNNNN---------------N-A-ACGTTT--TGTTGG-ATTGATC-----------CACTGAAATATTTATGATTGATTGATATACCTTTGGTT-GA-----GATA-------TT----GATCGA-----TTGATTGA--C---------A-TTTGATTGATTGATTG--A-CTGAAATTTGGACTGATTGTTGAGTGTTGATACTACAGTATTACTAC-CCAAAAGTCGTGGTAGATCATTG-ATTATATAAAATA--CAATGCTGAAA--A--TAATGTA-TTG-----ATATAAAG-CTCTCAGTTTTGATT--AAATGTTTTA--ACAAATAAAGCCATGGCAGAGACTGTCCATAT--AGTGTTGCTGTTCTGTTCTATTAATATAAT
gi|3 : tagcattgataatg--AATACACAAGATCCATACACTAA--CAC--CTGGTAGTAAAACATCCACATCACCTATCATTCTTCATATACTGAATCATCTTACA----------TGCCAAGTTCAGCCTCAGT-CTAGCAGCAATTCAAATCACGCATTTCGCACAGGTTAGAAAATGACCTTTACTAATCATGCTACCCTTGAAAATACG-------------------------AAAGATCCATAT-----ATCATTATTTATATACTGAACCAGCTATCGGCTATTCT-CAAGCAC---------CCTCAACATGAGCCGCAATTTA----CATCACGCATTTCGCACAGGTTATCTAATTAACGTCACTAATCACACtaaagctctatcatctatacattaatatacctcacactatcatactatttcttttaaat
gi|3 : tatatacttacaaAAAGATCCATAT-----A-TCATTA------TTTATATA---CTGAACCAGCT-AT-------------C---GGCTATTCTCAAGCACCCTCAACATGAGCCGCAATTTA----CATCACGCATTTCGCACAGGTTATCTAATTAACGTCACTAATC-------------ACACGCAAGATCCATACATTGAATCACTGATAATAGTAAAACgcaagatccatacattgaatcactgataatagtaaaactcaaactacaatttaattacatcaccatttcgcacaagtgggcgaattatcttcactaaccatactacccctacgctaccaaacactcgcgttattacaatgttgctaaaatggcaatcaatccaggtcccatcattacccgcaacgaattattacacaagcacatgcacactttcgtcaatcattccgtaggcatatggcctaagattcctgttcattcaccctcttccttcattattctttatgctacctgtctgactctcagaaaccattttgaatccattgattaatatcctcgatgaaaaaagggtaagcagtagcacatcacatataattctccttggcaggaagcatgggagcaat
gi|3 : tatatacttacaaaatacacaagatccatacactaacacctggtagtaaaacatccacatcacctatcattcttcatatactgaatcatcttacatgccaagttcagcctcagtctagcagcaattcaaatcacgcatttcgcacaggttagaaaatgacctttactaatcatgctacccttgaaaatacgACGTCACT-AATCACACGCAAGATCCATACA---TTGAATCA-CTGAT------------A--------ATAGT-AAAA---CTCAA-----ACTACAATTTAATTACATCAC-CATTTCGCACAAGTGGGCGAATTATCTTCACTAACCATACTACC-C---CTACGCTA---CCAAACACTtcaaactacaatttaattacatcaccatttcgcacaagtgggcgaattatcttcactaaccatactacccctacgctaccaaacactcgcgttattacaatgttgctaaaatggcaatcaatccaggtcccatcattacccgcaacgaattattacacaagcacatgcacactttcgtcaatcattccgtaggcatatggcctaagattcctgttcattcaccctcttccttcattattctttatgctacctgtctgactctcagaaaccattttgaatccattgattaatatcctcgatgaaaaaagggtaagcagtagcacatcacatataattctccttggcaggaagcatgggagcaat
gi|3 : tatatacttacaaaatacacaagatccatacactaacacctggtagtaaaacatccacatcacctatcattcttcatatactgaatcatcttacatgccaagttcagcctcagtctagcagcaattcaaatcacgcatttcgcacaggttagaaaatgacctttactaatcatgctacccttgaaaatacgaaagatccatatatcattatttatatactgaaccagctatcggctattctcaagcaccctcaacatgagccgcaatttacatcacgcatttcgcacaggttatctaattaAACTCAAACTACAATTTAATTACATCAC-CATTTCGCACAAGTGGGCGAATTATCTTCACTAACCATACTACCCCTACGCTACCAAACACTCGCGTTATTAC-AATGTTGCTAAAATGGCAAT-CAATCCAGGTCCCATCATTACCCGCAACGAATTATTACACAAGCACATGCACA--CTTTCGTCAATCATTCCGTAGGCATATGGCCTAAGATTCCTGTTCATTCACCCTCTTCCTTCATTATTCTTTATGCTACCTGTCTGACTCTCAGA----AACCATTTTGAATCCATTGATTAATATCCTCGATGAAAAAAGGGTAAGCAGT--AGCA-CATCACATATAATTCTCC--TTGGC---AGGAAGCATGGGAGCA---ATcgcgttattacaatgttgctaaaatggcaatcaatccaggtcccatcattacccgcaacgaattattacacaagcacatgcacactttcgtcaatcattccgtaggcatatggcctaagattcctgttcattcaccctcttccttcattattctttatgctacctgtctgactctcagaaaccattttgaatccattgattaatatcctcgatgaaaaaagggtaagcagtagcacatcacatataattctccttggcaggaagcatgggagcaat
gi|4 : tatatacttacaaaatacacaagatccatacactaacacctggtagtaaaacatccacatcacctatcattcttcatatactgaatcatcttacatgccaagttcagcctcagtctagcagcaattcaaatcacgcatttcgcacaggttagaaaatgacctttactaatcatgctacccttgaaaatacgaaagatccatatatcattatttatatactgaaccagctatcggctattctcaagcaccctcaacatgagccgcaatttacatcacgcatttcgcacaggttatctaattaacgtcactaatcacacgcaagatccatacattgaatcactgataatagtaaGTGTTTAGC-AAAATGTTGTAAGCTTGTGGCGG
gi|4 : ACTGG--------------TTGATT-GGAACATTAA---T-------AA-ATTGATTgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatgaattgactggttgattggaacattaataaattgattcattagaactttgttggattggtatattgaatgattgatacttgattgattggtataatgattgattgaccatttcttgattgaaaacattgattgaatcaggattgattgaaaacattgattgaattattgattgattcaaatacggactgactgttgatactaaaacagtcgctgtagatcatttcgttataccaagtacaattctgataatgtaattacatgtatgtaatgctctcagttttaatcagaaatgctaaattaagtgaagccatgacaaagactgtcagtttagtgctgttgttctgttctattgaaatgataattccagcacgtataaccctaccctagtactgatgttttaattatgctttgcttgattataagccgaggttcaggattagtcttaattatctgctcaagtgagtacattgaaaactgg
gi|4 : gtgtttagcaaaatgttgtaagcttgtggcgggnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatgaattgT---T--GGATTGGTAT-A------TTG--AATGA----T-------------T-GATAC-----TTGA--------------TTGATT-GG--TAT------A-------ATGATTGATTG---------------A-CCAT-TT-----CTTG-ATTGA------------------AAACATT---GAT----TGA---A--------T-CA-----GG-A-------TT----GATTGAAAACATTGATTGAATT---------A-TT-GATTGATTC---A--A-ATA-----CGGACTGACTGTTGA-------TACTAAAACA--------------GTCGCTGTAGATCATTTCGTTATACCAAGTA--CAATTCTG--A-----TAATGTAATTACATGTATGTAATG-CTCTCAGTTTTAATCAGAAATGCTAAA--TTAAGTGAAGCCATGACAAAGACTGTCAGTTT--AGTGCTGTTGTTCTGTTCTATTGAAATGATcattagaactttgttggattggtatattgaatgattgatacttgattgattggtataatgattgattgaccatttcttgattgaaaacattgattgaatcaggattgattgaaaacattgattgaattattgattgattcaaatacggactgactgttgatactaaaacagtcgctgtagatcatttcgttataccaagtacaattctgataatgtaattacatgtatgtaatgctctcagttttaatcagaaatgctaaattaagtgaagccatgacaaagactgtcagtttagtgctgttgttctgttctattgaaatgataattccagcacgtataaccctaccctagtactgatgttttaattatgctttgcttgattataagccgaggttcaggattagtcttaattatctgctcaagtgagtacattgaaaactgg
gi|5 : gtgtttagcaaaatgttgtaagcttgtggcgggnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatgaattgactggttgattggaacattaataaattgattcattagaactttgGTCTCGCTGTCATGGTGCGTAAT-AAAATGT---CAGCTTGTGGCGGATGTCTTCATGTATGTACGCA---TTTTTCATACATACATGAAGACATATGaattccagcacgtataaccctaccctagtactgatgttttaattatgctttgcttgattataagccgaggttcaggattagtcttaattatctgctcaagtgagtacattgaaaactgg
gi|5 : gtaA-CA-ACTTCGTT--GGATTGGTAT-A------TTG--AATGA----T-------------T-GATAC-----TTGA--------------TTGGT-------AT------A-------ATGATTGATTG---------------ACA-AT-TT-----CTTG-ATTGA------------------AAACATT---GAT----TGA---A--------T-AA-----TG-A-------TT----GATTGAAAACATTGATTGAATT---------A-TT-GATTGATTC---A--A-ATA-----CGGACTGACTGTTGA-------TGCTAAAGCA--------------GTCGCTGAAGATCATTTCATTATACCGAGTA--CAATTCTG--A-----TAATGTA-TTT-----ATGTAATG-CTGTCAGTTTTAATCAGAAATGTTAAA--TCAAGTAAAGCCATGACAAAGACTGCCAGTTT--AGTGTTGTTGTTCTGTTCTATTGAAATGATnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncagtgattgattacaacttcgttggattggtatattgaatgattgatacttgattggtataatgattgattgacaatttcttgattgaaaacattgattgaataatgattgattgaaaacattgattgaattattgattgattcaaatacggactgactgttgatgctaaagcagtcgctgaagatcatttcattataccgagtacaattctgataatgtatttatgtaatgctgtcagttttaatcagaaatgttaaatcaagtaaagccatgacaaagactgccagtttagtgttgttgttctgttctattgaaatgataattccagcacttacaaccttaccctagtactgttgttttaattaggttttgcttgattataagccgaggttcaggattagttttaattatctcctcaaatgagtacattgaatactg
gi|6 : gtagtctcgctgtcatggtgcgtaataaaatgtcagcttgtggcggatgtcttcatgtatgtacgcatttttcatacatacatgaagacatatgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncagtgattgattAC--AATTATACGTCCT-TTTTG---AGCGC-CA--TTT---TGACGAACATTCT-AGAGACATCG--AAT-A----T-A-----------CCGATTCG-ACATTGA--------------TTGATC-GCAACATCGA---A-------AG-ATTGATTGATTGATGATTTATTGA-A-ATATTG--TGTCGG-ATTGATC-----------CACTGAAATATT---GAT-GATTGA---T--------T-GA-----CATACCCTTGATTGAAATATTGA-----TTGATTGC--TTGACACTTGA-TT-GATTGATTG---G--A-TTT-----TGGACTGACTGTTGA-------T-----------ACTAC---------------AG--CATTAC----TGCCCAAAAGTCGTTG-TA--G--A--TAATGTA-TTG-----ATATAATA-CCGTCAGTTT----------------A--ACAAATAAAGCCATGACAAAGACCGCCAATAT--TGTGaattccagcacttacaaccttaccctagtactgttgttttaattaggttttgcttgattataagccgaggttcaggattagttttaattatctcctcaaatgagtacattgaatactg
gi|7 : aTGGCGGATGTCCGTATGTAT---CATCACTTTTGTTATTCACACATGAAGACACATGGCGCGAATTT-GCTTAAG-CCTGCCATGGATTTTGTTTCTTTCC-AGTTCCG-GGACCGAA-AATTAGCTTT-ATCCATGCATTG---A-AT---------GATTGACAT-AGATTAATTC--AA-----------------------------CACATTGA--------------TTGATTAAAAACGTTGATTTAGACATTCAT-ATTGATTG---------------A------TTGATTGTTAT-ATTGATT-----------TACTGAAGAATT----AT---TTGA---A--------T-AA-----TTGG-------TT----TATAAA-----TTGATTG---------------TT-GAT
gi|8 : aACTGAAATATT---GAT-GATTAA---A--------T-GA-----TATA-------CC----T-TTGA-----TAAA--GA--T---------A-TT-GATTGATTG---G--gttgc
gi|8 : tGTAGATCATTGCATTATATCTAATA--CAATGCTG--A--AGTTAATGTA-TTG-----ATATATTG-CTGTCAGTTTTGATC--AAAGGTTTTA--ACAAAT-------------AGACCGCCAATAT--AGTGTTGCTGTTCTGTTCTATTGAAATAAtagatcattgcattatatctaatacaatgctgaagttaatgtattgatatattgctgtcagttttgatcaaaggttttaacaaatagaccgccaatatagtgttgctgttctgttctattgaaataa
gi|9 : tactgaaatattgatgattaaatgatatacctttgataaagatattgattgattgTCGGGCTT-ATTTA---GTTGAACC-ATTA---T--CGATCGATATTAGAGCCATCG---AT-A----TAA-----------T-GATACGCACATTGA--------------TTGATC-GGAATATCGA---A-------AT-ATTGATTG-----------------A-TTGTTAT-TGTTCGAATTGGTC-----------CACTG-AATATT---GAT-GATTGA---A--------TCAA-----TATA-------CC----T-TTGA-----TTGA
blockSeqs : G CACTAA GCAAGA . G G CGGCT C CACC CATGA ATTA G T A ATACTACCC GA AT TGATAA T A TGCCA G C . T A A A G T A . G . A T . A . TC ATTA A A C G A GT A AA A TTTA A TT TCCATTGATTAATAT GGTAAGCAGTAGCA AA TCT T GAG . C AA ATA GC A T C AACC C A A A A G T . T . T TGT GTACGCA GG G G T T A A T AGG T T CG C C TGC AA C TCGTTG T GAGCC AA ACTGATACGCACATTGATT C GA AATNNNNNNNNNNN TA N TGATTTAGACATTCAT ATTGATGATTTATTGAAATATTG T A TTGGTTACATACA T TAT TG TATACCTTTGGTTGAGATATTGA C AAACA CTTGACACTTG . T ATTGACTGAAATT GTGTTGATACTACAGTATTACTACCCAAAA TT T A GT ATAA A CATGT A AG TT TT .
blockSeqs : A . . . . A . A . . . G T . GA . CTGG AT . G T C . . TC . . T . . TG AGA TACTGT . . G . . . . C . . . C GCT G . T TAA CATCACT TA . G T . . A T AGT C T . A . . A . TTGAC . GAGAC . ATACC A GC . N A NNNNNN NAACGTTT G . TC C . G TTGACATACCCTTGATTGAAATA T AAACA AATT . . GTTACATA TCTTGCATCATTACTACTCAAAA GT G A . AAAA . . . AG TT . .
blockSeqs : . TC . . G . . CA G TT . . . . . G . . . . . T . . A . ATC . GATTA . ATAAT A G . T A TAATAA ATTGTTAT T . TC C . G TTGATTGGTTACATACA T . AATT . . AATGA TACTAAAACA TG T A . AAGT . . . AG AA . .
blockSeqs : . C . . A . TTG . GAGCC . GATT T C . T A CGAAAG ACCATTT T . TT T . G ATAATTGGTTTA T . ATG . . AAATA TGCTAAAGCA CT T G . GA . . . . AA . .
blockSeqs : G . . C . ATC . . . GATT A . . C A CGAAAT ACAATTT G . TC A . G ATCAATATACCT A . AC . . AAATA TACTAC CT A C . A . . . . TT . .
blockSeqs : . . . . . . . . . . C . AATG ATTGAT A . . T . . ATCAGGATTGA T . AT . . GATTT . G T . A . . . . . . .
blockSeqs : . . . . AATG C . . T . . ATAATGATTGA T . . . . .
blockSeqs : . . . ATGATATACCT . . .
blockSeqCons : G* ACCGTTAT******************* ATGATGATTGA***************************** ATT********** TACTACCCAAACA****************** AG **
originalCons : NTATATACTTAGAAAATACACAAGATCCATACACTGATACCAGTAAAANATCCACGTCACC-A-TCATTC------TTCATATA---TTGAACCAGCT-AT------------AC---GGC-ATAGTCAAGN---CTCAACA---GCCGCAATTTA----CATCACGCATTTCGCACAAGTTAGCGAATTANCTTCACTAATCATGCTACC-C--AATACGCAAGATCCATACACTGA--CAC--ATGGTAGTAAAACATCCACATCACCTATCATTCTTCATATACTGAACCANCTTNCAGCTATTCTACCGCCAANTTCAGNCTCAGTTCNAGCNGCAATTCANATCACGCATTTCGCACAGGTTAGNAAATNACCTTCACTAANCATGCTNCCCCTGAAAATACGCTAGATCCATACACTGATACTAGTAAAANATCCACATCACCTGCCATTNTTCATATACNGAACCAGCTATCGGCTATTCTGCANGCACATAGTTCAGCCTCAACNCAAGCTGCAATTTA----CATCACGCATTTCGCACAGGTTAGCGAATTACCTTCACTAACCATACTACCCCTACGCTACCAAACACTCGCGTTATTACGAATGTTGCTAAAACGGCAAT-CAATCCAGGNNCCGTCATTACCCGTAACGAATTATTATCCAAGCACACGCACA--CTTTCGTCAATCAGACCGTAGGCATATGGCCTAAGGTTCCCGTTCATTCAACCTCTTCCTCCATTATTCTTTATGCTACCTGTCGGACACTCAGA----AACT-TTTCGAA-----NGA-------CCTCGATGAAGAAAG--------GT--AGCGCCATCGCTTATATTTCTAC--TTGGC---AGTAAGCATNGGAGCA---ATTCATTGCATT--TACAACAT-TTCCACAACTTGTTTTGCCAGGGCCTT-ATATATATATATATACTATCCAGGAAACAAATCCTTG-CCTCATTTAAAACACNACGCATTGGATGCCTAGTTGGTATCNTCTTGTCCGATACTTCCCGGGTTTACTCNACATAGTCCATGACATGCTAGNACATACNCCTGACTATNCNTCTATCCAACTGGCGGTCTTNCTGTCACGGCGTTTAGC-AAAATGTTGTNNGCTTGTGGCGGATGTCCTCATGTAT---CGC----TTTGTTANGCATACATGAAGACATATGGC-CGAATTTTGCT-AAG-CCTGCCACGTATTCTGTTTCCTTCC-AG-TCCGTGGAC--AATAATTGGNCTT-ATTTA---ATCGA-CA-ATTT---T--CGATCGATAT-AGAGCCATCG--AAT-A----T-A-----------T-GATACGCACATTGA--------------TTGATC-GGAACATCGA---A-------AT-ATTGATTG---------------A-A-ATGTTG--TGTTNG-ATTGATC-----------CACTGAAATATT---GAT-GATTGA---A--------T-GA-----TATA-------TT----TATTGA-----TTGATTGA--T---------A-TT-GATTGATTG---G--A-NTA-----CGGACTGACTGTTGA-------TGCTACAGCATTACTAC-C-AAAAGTCGTTGTAGATCATTNCATTATACCNAATA--CAATGCTG--A--A--TAATGTA-TTG-----ATATAATG-CTGTCAGTTTTGATCAGAAATGTTTTA--ACAAGTAAAGCCATGACAAAGACCGCCAATAT--AGTGTTGTTGTTCTGTTCTATTGAAATAAT
finalCons : NTATATACTTAGAAAATACACAAGATCCATACACTGATACCAGTAAAANATCCACGTCACC-A-TCATTC------TTCATATA---TTGAACCAGCT-AT------------AC---GGC-ATAGTCAAGN---CTCAACA---GCCGCAATTTA----CATCACGCATTTCGCACAAGTTAGCGAATTANCTTCACTAATCATGCTACC-C--AATACGCAAGATCCATACACTGA--CAC--ATGGTAGTAAAACATCCACATCACCTATCATTCTTCATATACTGAACCANCTTNCAGCTATTCTACCGCCAANTTCAGNCTCAGTTCNAGCNGCAATTCANATCACGCATTTCGCACAGGTTAGNAAATNACCTTCACTAANCATGCTNCCCCTGAAAATACGCTAGATCCATACACTGATACTAGTAAAANATCCACATCACCTGCCATTNTTCATATACNGAACCAGCTATCGGCTATTCTGCANGCACATAGTTCAGCCTCAACNCAAGCTGCAATTTA----CATCACGCATTTCGCACAGGTTAGCGAATTACCTTCACTAACCATACTACCCCTACGCTACCAAACACTCGCGTTATTACGAATGTTGCTAAAACGGCAAT-CAATCCAGGNNCCGTCATTACCCGTAACGAATTATTATCCAAGCACACGCACA--CTTTCGTCAATCAGACCGTAGGCATATGGCCTAAGGTTCCCGTTCATTCAACCTCTTCCTCCATTATTCTTTATGCTACCTGTCGGACACTCAGA----AACT-TTTCGAA-----NGA-------CCTCGATGAAGAAAG--------GT--AGCGCCATCGCTTATATTTCTAC--TTGGC---AGTAAGCATNGGAGCA---ATTCATTGCATT--TACAACAT-TTCCACAACTTGTTTTGCCAGGGCCTT-ATATATATATATATACTATCCAGGAAACAAATCCTTG-CCTCATTTAAAACACNACGCATTGGATGCCTAGTTGGTATCNTCTTGTCCGATACTTCCCGGGTTTACTCNACATAGTCCATGACATGCTAGNACATACNCCTGACTATNCNTCTATCCAACTGGCGGTCTTNCTGTCACGGCGTTTAGC-AAAATGTTGTNNGCTTGTGGCGGATGTCCTCATGTAT---CGC----TTTGTTANGCATACATGAAGACATATGGC-CGAATTTTGCT-AAG-CCTGCCACGTATTCTGTTTCCTTCC-AG-TCCGTGGAC--AATAATTGGNCTT-ATTTA---ATCGA-CA-ATTT---T--CGATCGATAT-AGAGCCATCG--AAT-A----T-A-----------T-GATACG-ACATTGA--------------TTGATC-GGAACATCGA---A-------AT-ATTGATTGACCGTTAT-------------------TGTTNG-ATTGATC-----------CACTGAAATATT---GAT-GATTGAATGATGATTGA-----------------------------TTGA-----TTGATTGATT----------A-TT-GATTGATTG---G--A-NTA-----CGGACTGACTGTTGATACTACCCAAACA------------------GTCGTTGTAGATCATTNCATTATACCNAATA--CAATGCTG--A--A--TAATGTA-TTG-----ATATAATG-CTGTCAGTTTTGATCAGAAATGTTTTA--ACAAGTAAAGCCATGACAAAGACCGCCAATAT--AGTGTTGTTGTTCTGTTCTATTGAAATAAT
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|15 ): GGAGCAATGTCATCGGGTCGATTCCTGAAATTCACACGATTATGTATGGGAAATTTGC
Unaligned ( gi|16 ): ATAACCTTTGATTGATTGATTGATTGATAACCTTTGATTGATTGATTGATT
Alignments
lowQualScore : 111111111111111111111
lowQualScore : 2222222 333333 222 1 111111111111111111111 1 2222 33333 2222 1 3333333333333 11 11 333333 444444444444444 1 8888888888888888888888888 22222 1 333333333 2222 1 1 11 2222 1 888888888888888 77777777777777777 11 222 222 11 3333 11 22 1111 1 1 7777777777 1 1 1 22222 11 111 22222222 222222 2222222222 11111 1111 1 555555555555555555555555 222222222 222222222222222 111 33333333333333333 444444444444444444444444444 333333333333333 222222222222222222222 88888888888888888888888888888888888888888 22222222 11111 11
lowQualScore : 1 0 5555555 888888 333 6 3 999999999999999999999 2 4444 44444 0 8888 2 3 1 7777777777777 00 88 222222 1 1 444444444444444 1 1 5 1 1 1 1 1 1 1 3333333333333333333333333 1 66666 1 1 5 1 888888888 77 1111 0 0 0 4 0 6 6 0 3 22 0 7 0 88 0 3 8888 3 44 333333333333333 33333333333333333 88 333 1 999 333 6 88 9999 00 00 7 6 9999 1 1 1 1 1 1 1 5 1 0 0 3 222 6666666666 11 0 2 3 0 0 2 3 0 33333 4 3 11 0 1 6 111 77 5 11111111 5 66666 5 444444 5 8888888888 11111 5 8888 0 4 000000000000000000000000 1 4 444444444 888888888888888 222 11111111111111111 7 666 666 7777 999999999999999999999999999 000000000000000 777 444444444444444444444 33333333333333333333333333333333333333333 33 1 0 1 77 99999999 5 44444 5 0 99 33 77 0 66
lowQualScore : . . ....... ...... ... . . ..................... . .... ..... . .... . . . ............. .. .. ...... . . ............... . . . . . . . . . . ......................... . ..... . . . . ......... .. .... . . . . . . . . . .. . . . .. . . .... . .. ............... ................. .. ... . ... ... . .. .... .. .. . . .... . . . . . . . . . . . . ... .......... .. . . . . . . . . ..... . . .. . . . ... .. . ........ . ..... . ...... . .......... ..... . .... . . ........................ . . ......... ............... ... ................. . ... ... .... ........................... ............... ... ..................... ......................................... .. . . . .. ........ . ..... . . .. .. .. . ..
lowQualScore : 0 7 3333333 333333 333 7 3 333333333333333333333 0 3333 33333 7 3333 0 7 0 7777777777777 00 33 000000 0 0 555555555555555 0 0 5 0 0 0 0 0 0 0 0000000000000000000000000 0 00000 0 0 0 0 000000000 55 2222 5 2 2 2 2 7 7 7 3 00 7 3 7 33 7 7 3333 3 33 333333333333333 00000000000000000 33 333 0 333 333 7 33 7777 33 77 3 7 0000 0 0 0 0 0 0 0 0 0 7 0 2 888 8888888888 22 0 5 2 0 0 0 2 2 22222 2 2 00 8 0 7 777 11 7 88888888 7 66666 7 777777 7 4444444444 22222 0 6666 0 4 000000000000000000000000 0 4 000000000 444444444444444 111 44444444444444444 3 444 444 7777 222222222222222222222222222 111111111111111 000 555555555555555555555 99999999999999999999999999999999999999999 44 0 1 0 99 66666666 7 33333 7 4 77 77 99 1 11
consensus : NTATATACTTAGAAAATACACAAGATCCATACACTGATACCAGTAAAANATCCACGTCACC-A-TCATTC------TTCATATA---TTGAACCAGCT-AT------------AC---GGC-ATAGTCAAGN---CTCAACA---GCCGCAATTTA----CATCACGCATTTCGCACAAGTTAGCGAATTANCTTCACTAATCATGCTACC-C--AATACGCAAGATCCATACACTGA--CAC--ATGGTAGTAAAACATCCACATCACCTATCATTCTTCATATACTGAACCANCTTNCAGCTATTCTACCGCCAANTTCAGNCTCAGTTCNAGCNGCAATTCANATCACGCATTTCGCACAGGTTAGNAAATNACCTTCACTAANCATGCTNCCCCTGAAAATACGCTAGATCCATACACTGATACTAGTAAAANATCCACATCACCTGCCATTNTTCATATACNGAACCAGCTATCGGCTATTCTGCANGCACATAGTTCAGCCTCAACNCAAGCTGCAATTTA----CATCACGCATTTCGCACAGGTTAGCGAATTACCTTCACTAACCATACTACCCCTACGCTACCAAACACTCGCGTTATTACGAATGTTGCTAAAACGGCAAT-CAATCCAGGNNCCGTCATTACCCGTAACGAATTATTATCCAAGCACACGCACA--CTTTCGTCAATCAGACCGTAGGCATATGGCCTAAGGTTCCCGTTCATTCAACCTCTTCCTCCATTATTCTTTATGCTACCTGTCGGACACTCAGA----AACT-TTTCGAA-----NGA-------CCTCGATGAAGAAAG--------GT--AGCGCCATCGCTTATATTTCTAC--TTGGC---AGTAAGCATNGGAGCA---ATTCATTGCATT--TACAACAT-TTCCACAACTTGTTTTGCCAGGGCCTT-ATATATATATATATACTATCCAGGAAACAAATCCTTG-CCTCATTTAAAACACNACGCATTGGATGCCTAGTTGGTATCNTCTTGTCCGATACTTCCCGGGTTTACTCNACATAGTCCATGACATGCTAGNACATACNCCTGACTATNCNTCTATCCAACTGGCGGTCTTNCTGTCACGGCGTTTAGC-AAAATGTTGTNNGCTTGTGGCGGATGTCCTCATGTAT---CGC----TTTGTTANGCATACATGAAGACATATGGC-CGAATTTTGCT-AAG-CCTGCCACGTATTCTGTTTCCTTCC-A-G-TCCGTGGAC--AATAATTGGNCTT-ATTTA---ATCGA-CA-ATTT---T--CGATCGATAT-AGAGCCATCGA-AT-AT-A-T-GAT------ACGCACATTGATTGATCGGA-ACA-TCGAAAT-ATTGATTG-ATTG-----TTATTG----------TTNG-ATTGATT-------CACTGAAAT--------------ATTGAT-GATTGAA----T-NA--------TG-A---T---TGA----TTG-------A-------------------TTGATTGA-TT--------A---TTGA---TTGATTG---G--A-NT-AC--------GGACTGACTGTTGA------------------T--------ACTAC---CAAACAGTCGTTGTAGATCATTNCATTATACCNAATA--CAATGCTG--A--A--TAATGTA-TTG-----ATATAATG-CTGTCAGTTTTGATCAGAAATGTTTTA--ACAAGTAAAGCCATGACAAAGACCGCCAATAT--AGTGTTGTTGTTCTGTTCTATTGAAATAAT
Reference ( family-792 ) : NTATATACTTAGAAAATACACAAGATCCATACACTGATACCAGTAAAANATCCACGTCACC-A-TCATTC------TTCATATA---TTGAACCAGCT-AT------------AC---GGC-ATAGTCAAGN---CTCAACA---GCCGCAATTTA----CATCACGCATTTCGCACAAGTTAGCGAATTANCTTCACTAATCATGCTACC-C--AATACGCAAGATCCATACACTGA--CAC--ATGGTAGTAAAACATCCACATCACCTATCATTCTTCATATACTGAACCANCTTNCAGCTATTCTACCGCCAANTTCAGNCTCAGTTCNAGCNGCAATTCANATCACGCATTTCGCACAGGTTAGNAAATNACCTTCACTAANCATGCTNCCCCTGAAAATACGCTAGATCCATACACTGATACTAGTAAAANATCCACATCACCTGCCATTNTTCATATACNGAACCAGCTATCGGCTATTCTGCANGCACATAGTTCAGCCTCAACNCAAGCTGCAATTTA----CATCACGCATTTCGCACAGGTTAGCGAATTACCTTCACTAACCATACTACCCCTACGCTACCAAACACTCGCGTTATTACGAATGTTGCTAAAACGGCAAT-CAATCCAGGNNCCGTCATTACCCGTAACGAATTATTATCCAAGCACACGCACA--CTTTCGTCAATCAGACCGTAGGCATATGGCCTAAGGTTCCCGTTCATTCAACCTCTTCCTCCATTATTCTTTATGCTACCTGTCGGACACTCAGA----AACT-TTTCGAA-----NGA-------CCTCGATGAAGAAAG--------GT--AGCGCCATCGCTTATATTTCTAC--TTGGC---AGTAAGCATNGGAGCA---ATTCATTGCATT--TACAACAT-TTCCACAACTTGTTTTGCCAGGGCCTT-ATATATATATATATACTATCCAGGAAACAAATCCTTG-CCTCATTTAAAACACNACGCATTGGATGCCTAGTTGGTATCNTCTTGTCCGATACTTCCCGGGTTTACTCNACATAGTCCATGACATGCTAGNACATACNCCTGACTATNCNTCTATCCAACTGGCGGTCTTNCTGTCACGGCGTTTAGC-AAAATGTTGTNNGCTTGTGGCGGATGTCCTCATGTAT---CGC----TTTGTTANGCATACATGAAGACATATGGC-CGAATTTTGCT-AAG-CCTGCCACGTATTCTGTTTCCTTCC-A-G-TCCGTGGAC--AATAATTGGNCTT-ATTTA---ATCGA-CA-ATTT---T--CGATCGATAT-AGAGCCATCGA-AT-AT-A-T-GAT------ACG-ACATTGATTGATCGGA-ACA-TCGAAAT-ATTGATTG-ACCG-----TTATTG----------TTNG-ATTGATC-------CACTGAAAT--------------ATTGAT-GATTGAA----T-GA--------TG-A---T---TGA----TTG-------A-------------------TTGATTGA-TT--------A---TTGA---TTGATTG---G--A-NT-AC--------GGACTGACTGTTGA------------------T--------ACTAC--CCAAACAGTCGTTGTAGATCATTNCATTATACCNAATA--CAATGCTG--A--A--TAATGTA-TTG-----ATATAATG-CTGTCAGTTTTGATCAGAAATGTTTTA--ACAAGTAAAGCCATGACAAAGACCGCCAATAT--AGTGTTGTTGTTCTGTTCTATTGAAATAAT
gi|1 : TATATACTTAGAAAATACACAAGATCCATACACTGATACCAGTAAAACATCCACATCACCTA-TCATTC------TTCATATAGTATTGAACCAGCT-ATCAGCTATTATACACTGTAGC-ATAGTTAAGT---CTCAATA---GCTGCAATCCA----CATCACACATTTTCCACAAGTTAGCAAATTACCTTCACTAATCATGCTACCACTGAATACGCAAATTCCATACACAGA--TAC--A----AGTAAAACATCCACATCATCTATCATTCTTTATATACTGAACCAGCTTTCAGCTATTCTACCGT--ATTTCAGACTCAATTCAAGCTGCAATTTACATCACACATTTCGCACAAGTTAGCAAATTACCTTCACTAAGCATGCTCCCCCTGAAAATACGCTAGATCCATACACTGATACTAGTAAAACATCCACATCACCTGCCATTCTTCATATACGGAACCAGCTATCGGCTATTCTGCATGTACATAGTTCAGCCTCAACG-AAGCTGCAATTTA----CATCACACAATTTGCACAGGTTAACAAATTACCTTCACTAATCATACTACCCCTACGCTACCAAACA--CGCGTTATTACGAATGTTGCTTAAACGGCAAT-CAATCTAGGCACCATCATTACCAGTAACGAATTGTTATCCAAGCACATGCACA--CTTTCGTCAATCAGACCGTAGGCTTATGGCCTAAGGTTCCTGTTCATTCAACCTCCTCCTCCATTACTCTTTATGCTATCTGTCGGACACTCAGA----AACT-TTTCAAA-----G----------CTCGCTGAAGAAAA--------GTTAAGC-CCATCGCTTATATTTCTAC--TTGGC---AGTAAGCATAGGAACAATTATTCATTGCATT--TACAACATCTTCCACAACTTTTTTTGTCAGGGCCTTAATATATATATATATACTATCCAGGAAA--------------CATTTAAAACACAACGCATTGGATGCTTAGTTGGTATCCTCTTGTCCGATACTTCCCGGATTTACTCTACATAGTCCATGACATGTTAGCACATACCCTTGACTATCCATCTATCTAACTGGCAGTCTTCCTGTCACGGCGTTTAGCAAAAATGTTGCCCGCTTGTGGCGGATGTCCTCATGTAT----G-----TTTGTTAGGCATACATGAAGACATATGGC-CGAATTTTGCT-AAG-CCTTCCACATATTCTGTTTCCTTCCAA-G-TCTGTGGAC--AATAATTGGACTT-ATTTA---ATCGA-CA-ATTT---T--CGATTGATAT-AGAGCCATCGA-AT-ATAA-T-GAT------ACGCATATTGGTTGATCGGA-ACA-TCAATAT-ATTAATAGAAATG-----TTG-TG----------TTCG-ATTGATT-------CACTGAAAT--------------ATTGAT-GATTGAA----T-GA--------TATA---T---TTA----TTG-------A-------------------TAGCTTGA-CA--------C---TTGA---TTGATTG---G--A-TT-TT--------GGACTGACTTTTGA------------------TGTTTCAGCATTACTACCAAA-AGTCGTGGTAGAGCATTGCATTATATCTAACG--CAATGCTC--A--AGTTAATGTA-TTG-----ATATATTG-CTGTCAGTTTTGATC--GAATGTTTTA--AGAAATAAAGCCATGACAAAGACCGCCAATATACAGTGTCGCTGCTCTGTTCTATTGAAATAAT
gi|10 : tTATTGA------------------T--------ACT-----CAAAC-GTCGTTGTAGATCATTTCATTATACTAAATA--CAATACTG--ATAA--TAATGTA-TTG-----ATATAATGACTGTCCGTTTTAATCAGAAATGTTTTATTAAGAGTAAAGCCATGACAAAGACTGCCAATAT--AG---TGTTGTTCTGTT
gi|11 : taatgTGATTG-ATTG----------G----------TTAC-AT--ACA-------CACTGACA------------------GAT-GATTGA-----T-----------TG-A---T---TGG----TTACATACATA-------------------CTGACAGA-TG--------A---TTGA---TTGATTG---GTTACAT-AC--------ACACTGAC
gi|11 : taccggattcATTGATTGATTGGTTACA-T--ACAT-ACTGACAG-A--------TGATTG----------ATTG-ATTGGTTACATACACACTGACAG--------------ATGCAC-GCCTGA-----T-TC--------TG-A---T---TGG----TTG-------A-------------------TTGagatgcacgcctgattctgattggttgattggacgttgtac
gi|12 : taccggattctgattgattggttacatacacactgacagatg---TTCATTG---A--A-TG-AT--------GGTTTGATTGTTGATCTTGCATCAT-------T--------ACTAC--TCAAA-AGTCAGTGTAGATCAgacgttgtac
gi|13 : gtCATTGCATT--TACAAC---TTCCACAACTTGTTTTGCCAGGGCCTT--TAAA-ATATGTATACTACCCAGGAAACAAATCCTTG-CTTCATTTAAAACcgcaatggattcaaacagtatttcagaacaacagtatgacaa
gi|14 : ATTTAGC-C-AATTTTGCT-AAAACCTGCCTCATATTCTGTT---------------GTGGCC--AATAACTGGCTTTCATTTA---ATCAA-CACATT--------GATTGA
gi|16 : --------TG-A---T---TGA----TTG-------A-------------------TTGATTGA-TA--------ACCTTTGA---TTGATTG---
gi|17 : ataaccttCCATGATAAAGACTGTCAGTTT--AGTGTTGTTATTCTGattgatt
gi|18 : AATAT--AGTGTTGTCGTTCTGCTCTATTGAAATAAT
gi|2 : CTTAACTCAAGCTGCAATTTA----CATCACACATTTCGCGCACGTTAGCAAATTACCTTCACTAACCATGCTACACTTACGCTACCCAACACTCGCATTATTACGTATGTTGCTAAAATGGCAATACAATCCAGGGTCCGTCATT-CCCGTAATGAATTATTATCCAAGCACACGAACAAACTTTCATCAATCAGACCTTAGGCATATGGCCTAAGGTTCCCGTTCATCCAACCTCTTCCTCCATTATTCTTTATGCTACCTGTCAGACACTCAGATTTAAGCT-TTTTTAA-----AGA-------CATTGATTAAGGGAG---------T--ACTGTCATTGGTTCGATTCCTAAAATTCACTCTATTATTCATTG---CA---ATT--TTGCAATAATAAAA-ATATTCCACAACTTGTTTT------------ATATATATACATGTACTCTCCAGGAAACAAATCCTTAACCTCATTTACAACATCACGCATTGGATGCCTAGTTAGTATCATCTTGTCTGATACTTCTCGGGTTTACTCAACATAGTCCATGACATGCTAGAACATATACCTAACTATGCTTCTATTCAA-TAGCGGTCTTTCTGTCATGGCGTTTAGC-AAAATGCTGTGTGCTTGTGGCGGATGTCTTCATGTAT----G-----TTTGTTAGGTATACATGAAGACATATGGC-CGATATTTACA-AAG-CCTGCCACATATTCTATTTCCTTCC-AGG-TCTGTTGAC--AATAGTTGGACTT-ATTTA---ATCGA-CA-ATTA---T--CGATCGATAT-AGAGCCATCGA-AA-AT-ACT-GAT------ACGCACATTGATTGATCAGA-ACA-TTGAAAT-NNNNNNNN-NNNN-----NNNNNN----------NNNN-NNNNNNN-------NNNNNNNNNNAACGTTTTGTTGGATTGATCCACTGAAATATT-TA--------TG-A---T---TGA----TTG-------ATATACCTTTGGTTGAGATATTGATCGA-TTG-------A---TTGACATTTGATTGATTG--A-TTGACTGAAATTTGGACTGATTGTTGAGTGTTGATACTACAGTATT--------ACTAC--CCAAA-AGTCGTGGTAGATCATTG-ATTATATAAAATA--CAATGCTGAAA--A--TAATGTA-TTG-----ATATAAAG-CTCTCAGTTTTGATT--AAATGTTTTA--ACAAATAAAGCCATGGCAGAGACTGTCCATAT--AGTGTTGCTGTTCTGTTCTATTAATATAAT
gi|3 : tagcattgataatg--AATACACAAGATCCATACACTAA--CAC--CTGGTAGTAAAACATCCACATCACCTATCATTCTTCATATACTGAATCATCTTACA----------TGCCAAGTTCAGCCTCAGT-CTAGCAGCAATTCAAATCACGCATTTCGCACAGGTTAGAAAATGACCTTTACTAATCATGCTACCCTTGAAAATACG-------------------------AAAGATCCATAT-----ATCATTATTTATATACTGAACCAGCTATCGGCTATTCT-CAAGCAC---------CCTCAACATGAGCCGCAATTTA----CATCACGCATTTCGCACAGGTTATCTAATTAACGTCACTAATCACACtaaagctctatcatctatacattaatatacctcacactatcatactatttcttttaaat
gi|3 : tatatacttacaaAAAGATCCATAT-----A-TCATTA------TTTATATA---CTGAACCAGCT-AT-------------C---GGCTATTCTCAAGCACCCTCAACATGAGCCGCAATTTA----CATCACGCATTTCGCACAGGTTATCTAATTAACGTCACTAATC-------------ACACGCAAGATCCATACATTGAATCACTGATAATAGTAAAACgcaagatccatacattgaatcactgataatagtaaaactcaaactacaatttaattacatcaccatttcgcacaagtgggcgaattatcttcactaaccatactacccctacgctaccaaacactcgcgttattacaatgttgctaaaatggcaatcaatccaggtcccatcattacccgcaacgaattattacacaagcacatgcacactttcgtcaatcattccgtaggcatatggcctaagattcctgttcattcaccctcttccttcattattctttatgctacctgtctgactctcagaaaccattttgaatccattgattaatatcctcgatgaaaaaagggtaagcagtagcacatcacatataattctccttggcaggaagcatgggagcaat
gi|3 : tatatacttacaaaatacacaagatccatacactaacacctggtagtaaaacatccacatcacctatcattcttcatatactgaatcatcttacatgccaagttcagcctcagtctagcagcaattcaaatcacgcatttcgcacaggttagaaaatgacctttactaatcatgctacccttgaaaatacgACGTCACT-AATCACACGCAAGATCCATACA---TTGAATCA-CTGAT------------A--------ATAGT-AAAA---CTCAA-----ACTACAATTTAATTACATCAC-CATTTCGCACAAGTGGGCGAATTATCTTCACTAACCATACTACC-C---CTACGCTA---CCAAACACTtcaaactacaatttaattacatcaccatttcgcacaagtgggcgaattatcttcactaaccatactacccctacgctaccaaacactcgcgttattacaatgttgctaaaatggcaatcaatccaggtcccatcattacccgcaacgaattattacacaagcacatgcacactttcgtcaatcattccgtaggcatatggcctaagattcctgttcattcaccctcttccttcattattctttatgctacctgtctgactctcagaaaccattttgaatccattgattaatatcctcgatgaaaaaagggtaagcagtagcacatcacatataattctccttggcaggaagcatgggagcaat
gi|3 : tatatacttacaaaatacacaagatccatacactaacacctggtagtaaaacatccacatcacctatcattcttcatatactgaatcatcttacatgccaagttcagcctcagtctagcagcaattcaaatcacgcatttcgcacaggttagaaaatgacctttactaatcatgctacccttgaaaatacgaaagatccatatatcattatttatatactgaaccagctatcggctattctcaagcaccctcaacatgagccgcaatttacatcacgcatttcgcacaggttatctaattaAACTCAAACTACAATTTAATTACATCAC-CATTTCGCACAAGTGGGCGAATTATCTTCACTAACCATACTACCCCTACGCTACCAAACACTCGCGTTATTAC-AATGTTGCTAAAATGGCAAT-CAATCCAGGTCCCATCATTACCCGCAACGAATTATTACACAAGCACATGCACA--CTTTCGTCAATCATTCCGTAGGCATATGGCCTAAGATTCCTGTTCATTCACCCTCTTCCTTCATTATTCTTTATGCTACCTGTCTGACTCTCAGA----AACCATTTTGAATCCATTGATTAATATCCTCGATGAAAAAAGGGTAAGCAGT--AGCA-CATCACATATAATTCTCC--TTGGC---AGGAAGCATGGGAGCA---ATcgcgttattacaatgttgctaaaatggcaatcaatccaggtcccatcattacccgcaacgaattattacacaagcacatgcacactttcgtcaatcattccgtaggcatatggcctaagattcctgttcattcaccctcttccttcattattctttatgctacctgtctgactctcagaaaccattttgaatccattgattaatatcctcgatgaaaaaagggtaagcagtagcacatcacatataattctccttggcaggaagcatgggagcaat
gi|4 : tatatacttacaaaatacacaagatccatacactaacacctggtagtaaaacatccacatcacctatcattcttcatatactgaatcatcttacatgccaagttcagcctcagtctagcagcaattcaaatcacgcatttcgcacaggttagaaaatgacctttactaatcatgctacccttgaaaatacgaaagatccatatatcattatttatatactgaaccagctatcggctattctcaagcaccctcaacatgagccgcaatttacatcacgcatttcgcacaggttatctaattaacgtcactaatcacacgcaagatccatacattgaatcactgataatagtaaGTGTTTAGC-AAAATGTTGTAAGCTTGTGGCGG
gi|4 : T---T--GGATTGGTAT-A------TTGA-ATGAT---T-GAT------AC-----TTGATTGATTGG---TA-T---AATGATTGATTG-ACC--------ATTT----------CTTG-ATTGA--------------AAAC--------------ATTGAT----TGAA----T-CA--------GG-A---T---TGA----TTG-------AAAACA--------------TTGATTGAATT--------A---TTGA---TTGATTC---A--A-AT-AC--------GGACTGACTGTTGA------------------T--------ACTA-----AAACAGTCGCTGTAGATCATTTCGTTATACCAAGTA--CAATTCTG--A-----TAATGTAATTACATGTATGTAATG-CTCTCAGTTTTAATCAGAAATGCTAAA--TTAAGTGAAGCCATGACAAAGACTGTCAGTTT--AGTGCTGTTGTTCTGTTCTATTGAAATGATgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatgaattgactggttgattggaacattaataaattgattcattagaactttgttggattggtatattgaatgattgatacttgattgattggtataatgattgattgaccatttcttgattgaaaacattgattgaatcaggattgattgaaaacattgattgaattattgattgattcaaatacggactgactgttgatactaaaacagtcgctgtagatcatttcgttataccaagtacaattctgataatgtaattacatgtatgtaatgctctcagttttaatcagaaatgctaaattaagtgaagccatgacaaagactgtcagtttagtgctgttgttctgttctattgaaatgataattccagcacgtataaccctaccctagtactgatgttttaattatgctttgcttgattataagccgaggttcaggattagtcttaattatctgctcaagtgagtacattgaaaactgg
gi|5 : gtgtttagcaaaatgttgtaagcttgtggcgggnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatgaattgactggttgattggaacattaataaattgattcattagaactttgGTCTCGCTGTCATGGTGCGTAAT-AAAATGT---CAGCTTGTGGCGGATGTCTTCATGTATGTACGCA---TTTTTCATACATACATGAAGACATATGaattccagcacgtataaccctaccctagtactgatgttttaattatgctttgcttgattataagccgaggttcaggattagtcttaattatctgctcaagtgagtacattgaaaactgg
gi|5 : gtaA-CA-ACTTCGTT--GGATTGGTAT-A------TTGA-ATGAT---T-GAT------AC-----TTGATTGGT-------A-T---AATGATTGATTG-ACA--------ATTT----------CTTG-ATTGA--------------AAAC--------------ATTGAT----TGAA----T-AA--------TG-A---T---TGA----TTG-------AAAACA--------------TTGATTGAATT--------A---TTGA---TTGATTC---A--A-AT-AC--------GGACTGACTGTTGA------------------T--------GCTA-----AAGCAGTCGCTGAAGATCATTTCATTATACCGAGTA--CAATTCTG--A-----TAATGTA-TTT-----ATGTAATG-CTGTCAGTTTTAATCAGAAATGTTAAA--TCAAGTAAAGCCATGACAAAGACTGCCAGTTT--AGTGTTGTTGTTCTGTTCTATTGAAATGATnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncagtgattgattacaacttcgttggattggtatattgaatgattgatacttgattggtataatgattgattgacaatttcttgattgaaaacattgattgaataatgattgattgaaaacattgattgaattattgattgattcaaatacggactgactgttgatgctaaagcagtcgctgaagatcatttcattataccgagtacaattctgataatgtatttatgtaatgctgtcagttttaatcagaaatgttaaatcaagtaaagccatgacaaagactgccagtttagtgttgttgttctgttctattgaaatgataattccagcacttacaaccttaccctagtactgttgttttaattaggttttgcttgattataagccgaggttcaggattagttttaattatctcctcaaatgagtacattgaatactg
gi|6 : gtagtctcgctgtcatggtgcgtaataaaatgtcagcttgtggcggatgtcttcatgtatgtacgcatttttcatacatacatgaagacatatgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncagtgattgattAC--AATTATACGTCCT-TTTTG---AGCGC-CA--TTT---TGACGAACATTCT-AGAGACATCGA-AT-AT-A-CCGAT------TCG-ACATTGATTGATCGCA-ACA-TCGAAAG-ATTGATTG-ATTGATGATTTATTGAAATATTGTGTCGG-ATTGATC-------CACTGAAAT--------------ATTGAT-GATTGAT----T-GACATACCCTTG-A---T---TGAAATATTG-------A-------------------TTGATTGC-TTGACACTTGA---TTGA---TTGATTG---G--A-TT-TT--------GGACTGACTGTTGA------------------T--------ACTAC-----------------AG--CATTAC----TGCCCAAAAGTCGTTG-TA--G--A--TAATGTA-TTG-----ATATAATA-CCGTCAGTTT----------------A--ACAAATAAAGCCATGACAAAGACCGCCAATAT--TGTGaattccagcacttacaaccttaccctagtactgttgttttaattaggttttgcttgattataagccgaggttcaggattagttttaattatctcctcaaatgagtacattgaatactg
gi|7 : aTGGCGGATGTCCGTATGTAT---CATCACTTTTGTTATTCACACATGAAGACACATGGCGCGAATTT-GCTTAAG-CCTGCCATGGATTTTGTTTCTTTCC-A-GTTCCG-GGACCGAA-AATTAGCTTT-ATCCATGCATTG---A-AT---------GATTGACAT-AGATTAATTCA-AC-AC-ATT-GATTGATTAAAA-ACGTTGATTTA----G-ACATTC---AT-ATTGATTG-ATTG-------ATTG----------TTAT-ATTGATT-------TACTGAAGA--------------ATT-AT---TTGA--------A--------TA-A---T---TGG----TTT-------A-------------------TAAATTGA-TT--------G---TTGA---T
gi|8 : aACTGAAAT--------------ATTGAT-GATTAAA----T-GA--------T--A---TACCT------TTG-------A-------------------TAAA--GA-T---------A---TTGA---TTGATTG---G--gttgc
gi|8 : tGTAGATCATTGCATTATATCTAATA--CAATGCTG--A--AGTTAATGTA-TTG-----ATATATTG-CTGTCAGTTTTGATC--AAAGGTTTTA--ACAAAT-------------AGACCGCCAATAT--AGTGTTGCTGTTCTGTTCTATTGAAATAAtagatcattgcattatatctaatacaatgctgaagttaatgtattgatatattgctgtcagttttgatcaaaggttttaacaaatagaccgccaatatagtgttgctgttctgttctattgaaataa
gi|9 : tactgaaatattgatgattaaatgatatacctttgataaagatattgattgattgTCGGGCTT-ATTTA---GTTGAACC-ATTA---T--CGATCGATATTAGAGCCATCGATAT-A--A-T-GAT------ACGCACATTGATTGATCGGA-ATA-TCGAAAT-ATTGATTG-ATTG-----TTATTG----------TTCGAATTGGTC-------CACTG-AAT--------------ATTGAT-GATTGAA----TCAA--------TATACCTT---TGA----TTG-------A-------------------
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|15 ): GGAGCAATGTCATCGGGTCGATTCCTGAAATTCACACGATTATGTATGGGAAATTTGC