lowQualScore : 11111111111111111111111 1111111111111111111111111111111111111111111111111111111111111111111111111 1111111111111111111111111111111111111111111111111111
lowQualScore : 1111 2222 111 11111 11 1111 11111 11111 2222222 00000000000000000000000 1 1111111111 11 0000000000000000000000000000000000000000000000000000000000000000000000000 3333333333333333 111 11 111 111 44444444 11 11 222 1 222222 4444444444444444444444444444 222222222 22222222222 111 111111111 5555555555555555555 111 111 111 111 222222222222222 22222 44444444444444444 11 11 3333333 22222 111 2222222222222222222222222222222222222222222222222222 11111111 111111 222222222 1111111 22222222222222222222 111 1 44444444 222 1111 222222222 2 1 1 11111
lowQualScore : 2222 44 66 5 1 1 0000 555 5 77 1 5 5 44444 77 99 77 5 6 4444 6 6 99 88 66666 66666 0000000 99 00000000000000000000000 6 8 9999999999 11 8 6666666666666666666666666666666666666666666666666666666666666666666666666 8 0 8 8 8 5555555555555555 444 11 444 444 33333333 0 11 8 8 99 8 8 666 6 2 6 888888 6 3333333333333333333333333333 6 999999999 77777777777 111 555555555 6 4444444444444444444 000 0 000 1 0 5 000 777 666666666666666 8 00000 77777777777777777 00 3 11 1111111 00000 444 2222222222222222222222222222222222222222222222222222 77 8888 5 44444444 888888 4 0 000000000 4 4444444 1 44444444444444444444 1 888888 777 4 888 0 44444444 4 6 2 1 3 777 3 7777 7 777777777 3 0 6 5 2 5 3 3 2 2 4 44 55 4 00000 77
lowQualScore : .... .. .. . . . .... ... . .. . . . ..... .. .. .. . . .... . . .. .. ..... ..... ....... .. ....................... . . .......... .. . ......................................................................... . . . . . ................ ... .. ... ... ........ . .. . . .. . . ... . . . ...... . ............................ . ......... ........... ... ......... . ................... ... . ... . . . ... ... ............... . ..... ................. .. . .. ....... ..... ... .................................................... .. .... . ........ ...... . . ......... . ....... . .................... . ...... ... . ... . ........ . . . . . ... . .... . ......... . . . . . . . . . . . .. .. . ..... ..
lowQualScore : 3333 11 44 7 7 7 7777 777 7 99 1 7 7 33333 99 11 99 7 7 2222 7 7 22 88 77777 77777 7777777 22 55555555555555555555555 0 0 0000000000 00 0 4444444444444444444444444444444444444444444444444444444444444444444444444 0 8 0 0 0 2222222222222222 000 00 000 000 00000000 8 00 0 0 00 0 0 444 0 5 7 555555 7 8888888888888888888888888888 7 888888888 88888888888 777 000000000 7 3333333333333333333 000 7 000 7 3 7 000 999 222222222222222 0 00000 44444444444444444 22 2 00 8888888 00000 000 0000000000000000000000000000000000000000000000000000 99 6666 7 66666666 444444 4 9 999999999 4 4444444 9 00000000000000000000 4 222222 666 0 111 2 88888888 0 3 4 3 3 333 3 8888 1 777777777 3 0 7 8 2 1 6 6 0 0 0 99 55 0 00000 00
consensus : AAAACTTTTTTTN--AAATACAT-GCCC-TTCGGGCAGGCATTT-CC-AT---CA-AT--TTTCCCTGCCC-GGA-C-----AA--AAATTAACAATGC--C-CG-AAAA----TAA-AA-TA--CAGAT-AAA-----GACTG-----GAGA-AT-G--TTTTAAA--TCTT----------AC-GCTGTGTGACGTTCATTAGTATA-CAAA---TA-A-GTTAT--TGG-TG----------GG-GTTTT--T------------T-TTGTTT--T---------------AC--TT------A-ATTA-ACAAA-TGA-A-GT----GTT---------AG---TCC--CAAA---ATCT---ATGC-T-G-CA-AGTGCACTTTAAA--AT-TT-CAA--TGCC-ATTT-TGATTATAAGTCGGTGT-TTATTAGCT--G---CA-TGTGA--------CAATT---------TTC---AAAGCCCAAAATTA-ACTTT------TAGG-AGGGAAAA---ACCCC--A-G----TAAAA-TCACG-------------------TTT---TGTTGCATA---ATATATA-T---GCCA---CTTACTAG--T-TT-GTA-T---CAAT-C-----AAAGA-------T-G-------CG-GTACTCT--AAATTN-----ATATGAA-----CTG---GACAT-----------------AAA------------------ACTN----------TT--ACA--GACGAT-GA--T----TTATG----CATTA-AATG--------NTAAGT-CGTAC-------TTGAAATTATTCTT--A-CGCAA-----------GAGAATGA---TCGGC-T-TATGA-ATTGACTT--TATNATAA--AA-A--CATGTCCGAT-GATTGNAAGGAAAAG-CAA-TTT-TCG-T-GCACAAAAT--TTAG--AC-ATGCCC-GGCGGGCTTCTGTTCATGCAATT-TTT-GCATGCCCG-TT-C-C-GATTTTACC--AGG-CC-----CCGGGCAT-CGGGCTACCG
Reference ( gi|4 ) : AAAACTTTTTTTG--AAACACAT-GCCC-TTCAGGCAGGCATTT-C--AT---CA-AT--TTTTCCTGCCC-AGA-C-----AA--AAATTAACAATGC--C-CG-AAAA----TAA-AA-TA--CAGAT-GAA-----GACTG-----GAGA-AT-G--TTTTAAA--TC------------AC-GTT-TG--ACATTCATTA-TATA-CAAA---TA-A-G-TAT--TGG-TG----------GG-ATTTT--T------------T-TTGTTT------------------AC--TT------A-ATTA-ACAAA-TGA-A-GT----GTT---------AG---TCC--CAAA---ATCT---ATGCGT-G-CAGAGTGCACTTTAAA--AT-TT-CAA--TGCC-ATTT-TGAA-AT-AGTCGGTGT-TTATTAGCT--G---CA-TGTGA--------CAATT---------TTT---AAAGCCCAAAATTA-ACTTT------TAGG-AGAGAAAA---ACCCC--A-G----TAAAA-TCACG-------------------TTT---TGTTGCATA---ATATATA-T---GCCA---CTTACTAG--T-TT-GTA-T---CAAT-C-----AAAGA-------T-G-------CG-GTACTCT--AAATTA-----ATATGAA-----CTG---GACAT-----------------AAA------------------ACTG----------TT--ACA--GACGAT-GA--T----TTATG----TGTTA-AATG--------ATAAGT-CGTAC-------TTGAAATTATTCTT--A-TGCAA-----------GAGAATGA---TCGGC-T-TATGA-ATTGACTT--TATGATAA--AACA-GCATGTCCGAT-GATTGTAAGGAAAAG-CAAATTT-TCG-G-GAACAAAAT--TTAT--AC-ATG-CC-GGCAGGCTTCTCTTCATGCAATT-TTT-GCATGCCCG-TT-C-C-AATTTTACC--AGG-CC-----CCGGGCAT-TGGGCTACCG
gi|6 : AAAACTTTTTT-G--AAACACAT--CCC-TTCGGGCAGGCATTTTC--ATT--CA-AT--TTTTCC-GCCC-AGAAC-----AA--AAATTA-CA-TGC--C-CG-AAAAAATTTAATAACTA--CAGATTGAA-----GACTG-----GAGA-AT-G--TTTTAAA--TCTTATATA-----AC-GCT-TGTGACATTCATTA-TATA-CAAA---TA-A-G-TAT--TGG-TGTTTTTTAGGGGGCGTTTT--TTTTTTTTTTTATT-TTGTTTGTTA--------------AC--TTA-----A-ATTA-AC-AA-TGA-AGGT----GTT---------AG---TCC--AAAA---ATCT---ATGCTTGG-CA-AGTGCACTTTAAA--ATATT-CAAATTGCC-ATTTGTGAATATAAGTCGGTGT-TTATTAGCT--GGCACA-TGTGA--------C-ATT---------TCA---AAAAACC-AAATTA-ACCTT------TAGACAGGAAAAA---ACCCC--A-G----TAAAATTCACG-------------------TTT---TGTTGCATA---AAAAATATT---GCCA---CTTACTAAGCT-TT-GTATT---CAATACTGATAAAAGA-------T-G-------
gi|5 : tcttcacggaAAACTTACTTTG--AACAACAT-TGCC-TTCGGGCAG-CATTT-C--ATGGTCACATGCTTTTCCTGCCCCAGA-CCAAAGAACCAAGTTGACA-TGCAGCGCG-AAAA----TAA-AA-TGACCAGAT-TAATCACTGAGTG-----GAAG-ATAG--TTTTAAG--TCTTCATCATGAGGAC-GCT-TGTGACATTCATTAGTATATCAAAACGTAGA-GTTATTCTGGTTG----------TT-ATTTTTGT------------T-TTGTTT------------------TC--TTTACATAG-ACTAGACAAA-TGAGA-GT----GCTTATGTGGGAAA---TCCTGCAGAAGCATCTTAAATGC-T-GACA-AGTGCACTTTAAACCAT-TT-CAAT-TGCC-ATTT-TGAGTATAAGTC-GTGTATTA-TAGCTGAG---CA-TGTGACTCGAAGCCAGTTGTTACATCGTTTCCGAAAGCCAAAAATTATACTTTAGAAGGT-GG-AAAGGAAATATACCCCCGA-GATTATAAAA-TCTCGCCC----------------CTT---TCTTGCAAA---A---ATA-T---GCCAAT-CTTAC
gi|14 : AAACTTTTTTTT--AAATACAT-GCCC-TTTGGGCAGACATTTCC--AT---CA-AT--TTTCCCTGCCC-GAA-C-----AA--AAATTAAC-ATGC--C-CG-AAAA----TAA-AA-TA--CAGGA-AAA-----GACAG-----GAGATAG-T--TTTTAAA--TC------------gttgcttttagtcatatc
gi|18 : cttcacggAAATTTTATTTATTGAATACAT-GCCC-TTCATGCAGGTATTT-CC-AT---CA-AT--TTCACCTGACC-AAA-C-----AA--AAATTAAC-ATGC--C-Cttataacactattgtgacgttc
gi|3 : agtcttcatgAACTTTTTTTT--GAACACAT-GCCCCTTCAGGCAGGCATTT-C--AT---CA-AT--TTTTCCTGCCC-AGA-C-----AA--AAATTAACGATGT--C-CC-GAAA----TAA-AA-TA--CAGAT-GAA-----GACTG-----GAGA-AT-G--TTTTAAATTTC------------AC-GCT-TGTTGAATTCATTA-TATA-CAAT---AA-A-GTTAT--TGG-TG----------GG-A--TT--T------------T-TTGTTT------------------ACTTTT------ACATTA-ACAAATTGA-A-GT----GTT---------AG---TCC--CAAA---ATCT---ATGC-T-G-CAGA-TGCAC--TAAA--AT-TTGCAA--TGCCAATTT-TG-T-AT-AGTCGGTGT-TTATTAGCT--G---CA-TGTGA--------CAATT---------TTC---AAAGCC--AAATTA-ACTTT------TA-G-AGAGAAAA---ACCCC--A-G----TAAAA-TCACG-------------------TTT---TGTTGCATA---ATATATA-T---GCCA---CTTACTAGC-T-TT-GTA-T---CAAT-C-----AAAGA-------T-G-------CG-GTACTCT--AAAATT-----ATATGAA-----CTG---GACAT-----------------AAA------------------ACT-----------TT--ACA--GACGAT-GA--T----TT-------TGTTA-AATG--------ATAAGT-CGTAC-------TTGAAATTATTCTT--ATTGC-A-----------GAGAATGA---TCGGCTT-TATGA-ATTGACTT--TATGAT-A--AACA-GCATGT-CGAT-GATTGTAAGGAAAAG-CAA--TT-TCG-G-GAACAAAA---TTAT--AC-ATGCCC-GGCAGGCTTCTCTTCATGCAATT-TTT-GC-TGCCCG-TT-C-C-AATTTTACC--AGG--C-----CCGG--AT-T-GGCTACCGcca
gi|1 : agtctttcacgaacAACTTTTTTGT--AAATACATTGCCC-TTTGGGCAGA-ATTT-CCAGT---CA-AT--TTTCCCT-CCC-GAA-C-----AA--AAATTAA-AATGC--C-CGGAAAA----TAA-A--TA--CAGGA-AAA-----GACTGTCACAGAGA-TT-AGTTTTTAAA--TCTTATAAT-----ACTATTGTG--ACGTTCATCAGTATA-CAAA---TA-CCG-TAT--TG--TG----------GT-CTTTG--T------------TGTTGTTTTGTCTAATATTTTTTTATAC--TT------A-ATTA-ACAAA-TGA-A-GT----TCT---------AGACGTCC--TAAA---ATCT---ATGC-T-G-CA-AGTGCATTTAAAA--GT-TC-CAA--TGCC-ATTT-T-AT-AT-AGTCGGTGT-TTATAAGCTT-G---CA-TGTGG--------CA--T---------TTC---AAAGCC----A--A-ACGTT------TAG--AGGGAAAA---CCCCC--CTG----CAAAA-TCACA-------------------TTTAACT-TTGTAT-----TTTATA-T---GCCA---CTTACGAA--C-TTCGTA-TT--CAAT-C-----AAAGA-------T-AGCATCTACG-AT-CGCA--AAATGT-----ATATGAA-----ACG---GACAC-----------------AAACATGCAACTAGGGAAAAAACTC----------TG--ACATCGACGGT-A--------TTATG----CATTA-ATTGCCATAAAAATAAGT-CTTAC-------TTGAAAGTAGTCTT--G-CGCAA-----------GAGAATGA---T--GC-T-TATGA-ATT-ACTT--TTTGATAA--A-----CATGTCCG-T-GA-TGTAA-GAAATG-CAA--TT-TCGTGCGAACAAA----TTAA--ACGATGCCC-GGCAGGATTC-CTTCATGCAATCGTTT-GCATGCCCC-TTCC-C-GA--TTACC--AGG-CC-----CCGGGCAT-CGGGCTACCGggtta
gi|2 : gtcttcactggTTTTTG--AA-TACAT-GTCC-TTCGGGCAAGCATTT-CC-AT---CA-AT--TTTCCCTGCCA-GAA-C-----AA--AAATTAACA-TGC--T-CG-AAAA----TAA-AA-TA--CAGAT-AAA-----GACTA-----GAGC-TT-GT-TTTTAAA--TC----------------TTGTG--ACGTTCATTA-TTTA-CAAA---TA-A-G-TAT--TGG-TG----------GG-GTTTT--TG-----------T-TTGTTT------------------AC--TT------A-TATA-ACATA-TGA-A-GTTTTAATT---------AG---TCC--CAAA---ATCT---ATGC-T-G-CA-AGTGCACTTTAAA--AT-TT-CAA--TGCC-ATTT-TGAT-AT-AGTCTGTGT-TTATAAGCT--A---CA-TGTAG--------CA--T---------TTC---AAAG-CCA-----A-ACTTT------TA-G-AGGGAAAA---CCCCC--A-G----CAAAA-TCACGTAACTTAACTTTTGTTGTATTT---TGTTGCATA---ATATATA-T---GCCA---CTTACTTGC-T-TC-ATA-T---CAAT-C-----GAAGATAGCATCT-A-------CA-GTACTCT--AGACTAAAATTATATGAA-----CTG---GACATAAACTTGCAACAAGGGAAAA------------------ACTGACTTCGTTCTTT--ACA--GACGAT-GA--T----TTATG----CAT----------------TAAGT-CGTAC-------TTGAAATTATTCTT--A-TTCAA-----------GAGAGTGA---TCGGC-TGTAAGA-ATTGACT--------------------------GAT-GATTGTAAGGAAAAG-C-AATTT-TCG-T-GAACAAAAT--TTATAAAC-ATGCCC-GGTGGGCTTCTCTTCATGCAATT-TTT-GCATGCCCG-TT-C-CTGATTTTACC--AGG-CCAGGAGTCGGGCAT-CGGGCTACCGggttatttcggaagac
gi|15 : GGTGT-TTATTAGCT------CACCTTGA--------CAATT---------TCC---AAAAGCCAATCTCC-CCTTT------TAGC-ACAGAAAA---ACCCC--A-G----TAAAA-TCACG-------------------TTT---TGTTGCATAACCATACATA-TATGGCCATCTTTTATCAG--TATT-GAA-TA--CAAggttacttcga
gi|9 : -------------------TTT---TGTTGCTTA---ATATTTA-T---GCCA---CTTGCTAG--C-TT-CGA-TTCGTGAT-C-----AAAGA-------TAG-------CATCTACTTTTAAAATT------ATATGAG-----ATG---GACAC-----------------AAA------------------CTTG----------CA--ACT--GGGGACAGACTT----TTATACCACTTTTA-AAAA--------ATAA-T-CATAG-------TTGGCAACATTGTT----TAC-A-----------GATGGTGA---T-----T-TATGC-ATTa
gi|7 : agaagcgtatagtttaactttgta--AAATGA-----ACATGAAGACAACTGCAAAACATCT---------------ACA------------------ATTT----------TTCTACA--G-TGAT-GA--T----TTATG----GATTATAATG--------ATAAGTACGTAC-------T-GAA----TCCTT--A-TGCAA-----------GAGA-TGA---TCGGC-TGTATGA-ATTGACTT--TATCTTAA--ACCAAGCATGTCCGATTGATTGTAGAAAAAAGGCA---TT-TCA-G-GAACAAAAAAATTAC--AC-ATG-CCCGGCGGGGTTCTCTTCATGCCATT-TTT-GCATGCCCG-TTCC-C-AATTTTACCCAGGG-CC-----CCGGGTAT-CGTGCTACCGtaaagttaagttgtacttgaaattagaatgatcagcagcatgtactgactttatcataaacatgtca
gi|8 : atcaaagaagaaagtcttataaaaacgtaactatacata----------TT--ACA----CAAT-GG--TGAGGTTATG----CTTTA-AATG--------TTAAGT-TGTACAGTGTACTTGAAAGTATTCATGAA-TGGAAGAGGTGCCCATGAGAATGACAGTCTGT-T-TA--A-ATTGTTTT--TATTATAA--AA-A-CTATGTCC-AT-GATTGAAAGG-AAAG-C-AATTC-TCT-T-GCATGAAA---TTAA--AC-ATG-CC-ggtatttcgaaggga
gi|9 : tatcccctatatgcttcatgatcacatacagcatctactctaaaactatctgagcaggacacaaacttgcaactggggatcgactatttcttacaaccccgctaaacaaagcattgttgccaatgttgc----------TT--ACA--GATGGT-GA--T----TTATG----CATTT-AAAG--------TTAAGT-TGTAC-------TTGAAATT---------------------------AGAATGA---TCAGCAG-CATGT-ACTGACTT--TATCATAA--A-----CATGTCcgact
gi|10 : agaagcgtatagtttaactttgtattttgttgcttaatatttatgccacttgctagcttcgattcgtgatcaaagatagcatctacttttaaaattatatgagatggacacaaacttgcaactggggacagacttttataccacttttaaaaaataatcatagttggcaacattgt----TATCA-AGTG--------CTAAGT-TGCAC-------TTGAAATTATTCTT--A-CACAA-----------GAG-GT--------GC-C-CATGAGAATGATCTGCTATAATAA--A-----CATGTCTGAG-GATTGAAAGG-AAAG-C-AATTT-TCT-T-GCACAAAAT--------------------------TCTGTTCATGCAATT-TTT-ACATGCCCACTT-C-T-GATTTTACC--AGG-CC-----CCGGGCAT-CGGGCTACa
gi|19 : acgcattgttgatgcttttactaaaacatctgtacaactgtgattaagcatcaagtgctaagtA-ACTG--------CTAAGT-CGCAC-------TTG-AATTATTCTT--A-CGCAA-----------ggggttattttgaag
gi|12 : cacaatggatgctttaactaataatgaattgaagcaccacATAA---TCGGC-TGTATGA--TTGGCTA--TAT--TAATTAAC--------TTGAT-AAT-G-AAG--AAAG-C-AACTT-TCC-T-GCACAAAA---GTAG--GT-ATGTCT-GGCGTGCTTCTGGTTGTTTAATT-GTT-ATACTCCAG-CT-C-C-CGATTTAAC--GTG-TG-----CCGGGCTT-CGTGCTACcgggtgccca
gi|11 : GA-ATTGACTG--TATAATAT--TAAA-ACATGTCTGAT-GATTGAAAGGAAA-G-CAATTTTGTTG-T-G--CAAAAT--T-AG--AC-ATG-CCCGGTGGGCTTCTGCTCATGCAATT-TTT-ACATGCCTG-CT-CTC-AATTTTATC--AGG-CC-----CCGGGCAT-CAGGCTACCttgttttttttcaaagact
gi|16 : ttagtaatacaaatatgttcttaaaCTGAT-GATTGAAAGGAAA-G-CAA-TTT-TCA-T-GCGCAAAAT--T-AG--AC-ATGTCC-GGCGGGCATCTGTTCATGCAATT-TTT-ACATGCCCGCTT-C-T-GATTTTACC--AGA-CC-----ATGGACTTCTGGGTTAagattattttaaa
gi|13 : AT-GATAATGAAGGAAAG-TAA-TTT-TCC-T-GCACAAAA---GTAG--GT-ATGTCT-GGTGGGATTCTGATAGTTTAATT-GTC-ACACTCCAGCTC-C-C-GATTTTAAC--ATG-TG-----CCGGGCTT-CGTGCTACtt
gi|17 : atgatcggctacattaattagtAGGAAAAG-CAG-TTT-TCA-T-GCATAAAAT--TTAG--AC-ATG-CC---C-GGCGTCTGTTCTTGCAATT-TTTCGCATGTCCG-TTTC-C-AATTTTACG--AGGCCC-----CCGGCCAT-CAGGCTTCCGttggttttttcaaag
gi|6 : GGAAAAA-C---TTT-TTT-G-AAACA-------CAT--CC-CTT-CG-GGCAGGC--ATTTTCATTCAATT-TTT-CC--GCCCggtcattt
1 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|20 ): TTGGACCAAACGTTCTTGTAAACACCAATACCGT
Alignments
lowQualScore : 11111 1 11111 1 1111 11111 11111 1111 77777777777777777777777 1 111 333333333 555555555555555555555555555555555555 2222222222222222222 1111 222222222 111 111 111 11 33 1 222222 4444444444444444444444 1111 111111 111 1111 4444444444444444444 111 2222 222 11111 33333333333333333 2222222 11111 111 9999999999999999999999999999999999999999999999999999 1111111 111111111 1111111 222222222222 111 222222222 2222222 1
lowQualScore : 5 666 5 5 0 55555 5 66 1 0 22222 66 7 66 5 5 2222 5 5 77 5 1 44444 44444 5 5555 44444444444444444444444 5 9 6 111 333333333 99 99 6 222222222222222222222222222222222222 6 4444444444444444444 6 6 6 6 4444 666666666 111 99 111 111 6 99 6 6 99 6 6 55 6 6 11 5 0 5 333333 5 2222222222222222222222 77 4 2222 1 5 666666 555 5 5 8888 2222 5 7777777777777777777 888 888 0 5 888 555 0000 5 5 111 6 66666 66666666666666666 8 0 3333333 4 1 66666 111 4444444444444444444444444444444444444444444444444444 66 66 0 4 3333333 999999 8 4 666666666 7777777 55 44 4 000000000000 777 0 666 11 666 3 0 3 2 555555555 3 11 3 4 1 5 3 3 2 4 44 2222222 2 3 0 1 3 3 3 8 7 3 3 55 3 99999 3
lowQualScore : . ... . . . ..... . .. . . ..... .. . .. . . .... . . .. . . ..... ..... . .... ....................... . . . ... ......... .. .. . .................................... . ................... . . . . .... ......... ... .. ... ... . .. . . .. . . .. . . .. . . . ...... . ...................... .. . .... . . ...... ... . . .... .... . ................... ... ... . . ... ... .... . . ... . ..... ................. . . ....... . . ..... ... .................................................... .. .. . . ....... ...... . . ......... ....... .. .. . ............ ... . ... .. ... . . . . ......... . .. . . . . . . . . .. ....... . . . . . . . . . . . .. . ..... .
lowQualScore : 0 111 0 0 2 44444 0 99 1 0 55555 99 4 99 0 7 1111 7 7 99 7 1 33333 33333 7 1111 11111111111111111111111 7 2 7 777 333333333 00 22 7 222222222222222222222222222222222222 7 3333333333333333333 7 7 7 7 2222 777777777 777 22 777 777 7 22 7 7 22 7 7 88 7 7 00 5 7 7 000000 7 1111111111111111111111 99 3 1111 4 7 444444 333 7 7 0000 1111 7 5555555555555555555 888 888 4 0 888 666 3333 7 7 444 7 77777 33333333333333333 0 8 8888888 0 0 77777 777 1111111111111111111111111111111111111111111111111111 11 11 8 4 7777777 111111 0 0 999999999 0000000 55 88 0 555555555555 000 7 444 99 444 3 5 5 3 666666666 6 66 6 5 2 4 3 3 4 4 66 9999999 3 3 2 4 6 6 6 2 3 6 6 00 6 11111 6
consensus : AAAACTTT-TTT-TTAAACACAT-GCCC-TTCGGGCAGGCATTTCC--A-TCA-AT--TTTCCCTGCCC-GAAC-----AA--AAATTAACAATGC--C-CG-AAAA----TAA-AA-TA--CAGA-TGAA-----GACTG-----GAGA-AT-G--TTTTAAATCTT----------ACG---CT--T-G-TGACGTTCATTA-TATA-CAAA---TA---------AGTTAT--TGG-TG-------GGG-----------TTTT--------T--TTTG-TTTT--------ACTT-A-----ATTA-ACAAA-TGA-A-GT----GTT---------AG---TCC--CAAA---ATCT---ATGC-T--G-CA-AGTGCACTTTAAA--AT-TT-CAA--TGCC-ATTT-TGA-TATAAGTCGGTGT-TTATTAGCT--G---CA-TGTGA--------CAAT----------TTTC--AAAGCCCAAAATTA-ACTTT------TAGG-AGGGAAA-A-ACCCC--A-G----TAAAA-TCACG-------------------TTT---TGTTGCATA---ATATATA-T---GCCA---CTTACTAG--T-TT-GTA-T---CAAT-C-----AAAGA-------T-G-------CG-GTAC-T-----CTAAANTTATATGAA-----CTG---GACAT-----------------AA------------------AACT----------TTT--ACA--GACGAT-GA--T----TTATG-CA---TTA-AA-TGN--------TAAGT-------CGTACTTG--AA-ATTATTC-T------------TA-CGCAAGAGAATGA---TCGGC-T-TATGA-ATTGACTTTATNATA--A-A---AAC-ATGTCCGAT-GATTGNAAGGAAAAG-C-AATTTTCNTGC--ACAAAAT--T--TAGAC-ATGCCCGGCGGGCTTCTGTTCATGCAATT-TTT-GCATGCCCGCTT-C-C-GATTTTACC--AGG-CC-----CCGGGCATC-GGGCTACCG
Reference ( family-7901 ) : AAAACTTT-TTT-TNAAATACAT-GCCC-TTCGGGCAGGCATTTCC--A-TCA-AT--TTTCCCTGCCC-GGAC-----AA--AAATTAACAATGC--C-CG-AAAA----TAA-AA-TA--CAGA-TAAA-----GACTG-----GAGA-AT-G--TTTTAAATCTT----------ACG---CTG-T-G-TGACGTTCATTAGTATA-CAAA---TA---------AGTTAT--TGG-TG-------GGG-----------TTTT--------T--TTTG-TTTT--------ACTT-A-----ATTA-ACAAA-TGA-A-GT----GTT---------AG---TCC--CAAA---ATCT---ATGC-T--G-CA-AGTGCACTTTAAA--AT-TT-CAA--TGCC-ATTT-TGATTATAAGTCGGTGT-TTATTAGCT--G---CA-TGTGA--------CAAT----------TTTC--AAAGCCCAAAATTA-ACTTT------TAGG-AGGGAAA-A-ACCCC--A-G----TAAAA-TCACG-------------------TTT---TGTTGCATA---ATATATA-T---GCCA---CTTACTAG--T-TT-GTA-T---CAAT-C-----AAAGA-------T-G-------CG-GTAC-T-----CTAAATTNATATGAA-----CTG---GACAT-----------------AA------------------AACT----------NTT--ACA--GACGAT-GA--T----TTATG-CA---TTA-AA-TGN--------TAAGT-------CGTACTTG--AA-ATTATTC-T------------TA-CGCAAGAGAATGA---TCGGC-T-TATGA-ATTGACTTTATNATA--A-A---AAC-ATGTCCGAT-GATTGNAAGGAAAAG-C-AATTTTCGTGC--ACAAAAT--T--TAGAC-ATGCCCGGCGGGCTTCTGTTCATGCAATT-TTT-GCATGCCCG-TT-C-C-GATTTTACC--AGG-CC-----CCGGGCATC-GGGCTACCG
gi|1 : AACTTT-TTT-GTAAATACATTGCCC-TTTGGGCAGA-ATTTCC--AGTCA-AT--TTTCCCT-CCC-GAAC-----AA--AAATTAA-AATGC--C-CGGAAAA----TAA-A--TA--CAGG-AAAA-----GACTGTCACAGAGA-TT-AGTTTTTAAATCTT----------ATAATACTA-TTG-TGACGTTCATCAGTATA-CAAA---TACCGTATTGTGGTCTT--TGT-TG-------TTG-----------TTTTGTCTAATAT--TTTT-TTAT--------ACTT-A-----ATTA-ACAAA-TGA-A-GT----TCT---------AGACGTCC--TAAA---ATCT---ATGC-T--G-CA-AGTGCATTTAAAA--GT-TC-CAA--TGCC-ATTT-TA--TATA-GTCGGTGT-TTATAAGCTT-G---CA-TGTGG--------CA------------TTTC--AAAGCC----A--A-ACGTT------TAG--AGGGAAA-A-CCCCC--CTG----CAAAA-TCACA-------------------TTTAACT-TTGTAT-----TTTATA-T---GCCA---CTTACGAA--C-TTCGTA-TT--CAAT-C-----AAAGA-------T-AGCATCTACG-AT-C-G-----CAAAATGTATATGAA-----ACG---GACAC-----------------AAACATGCAACTAGGGAAAAAACT----------CTG--ACATCGACGGT-A--------TTATG-CA---TTA-AT-TGCCATAAAAATAAGT-------CTTACTTG--AA-AGTAGTC-T------------TG-CGCAAGAGAATGA---T--GC-T-TATGA-ATT-ACTTTTTGAT-----A---AAC-ATGTCCG-T-GA-TGTAA-GAAATG-C-AA-TTTCGTGCGAACAAA----T--TAAACGATGCCCGGCAGGATTCC-TTCATGCAATCGTTT-GCATGCCCC-TTCC-C-GA--TTACC--AGG-CC-----CCGGGCATC-GGGCTACCG
gi|10 : gtcttcactggA---TCA-AG-TGC--------TAAGT-------TGCACTTG--AA-ATTATTC-T------------TA-CACAAGAG-GT--------GC-C-CATGAGAATGA-TCTGCTATA--ATA---AAC-ATGTCTGAG-GATTGAAAGG-AAAG-C-AATTTTCTTGC--ACAAAA-------------------------TTCTGTTCATGCAATT-TTT-ACATGCCCACTT-C-T-GATTTTACC--AGG-CC-----CCGGGCATC-GGGCTACggttatttcggaagac
gi|11 : acgcattgttgatgcttttactaaaacatctgtacaactgtgattaagcatcaagtgctaagttGA-ATTGACTGTATAATATTA-A---AAC-ATGTCTGAT-GATTGAAAGGAAA-G-C-AATTTTGTTGT--GCAAAAT--T---AGAC-ATGCCCGGTGGGCTTCTGCTCATGCAATT-TTT-ACATGCCTG-CT-CTC-AATTTTATC--AGG-CC-----CCGGGCATC-AGGCTACCggggttattttgaag
gi|12 : ttagtaatacaaatatgttcttaaaATAA---TCGGC-TGTATGA--TTGGCTATATTA-A--T-T---AAC-TTG----AT-AAT--GAAG--AAAG-C-AACTTTCCTGC--ACAAAAG--T---AGGT-ATGTCTGGCGTGCTTCTGGTTGTTTAATT-GTT-ATACTCCAGCTC-C-C-GA-TTTAAC--GTG-TG-----CCGGGCTTC-GTGCTACagattattttaaa
gi|13 : ATGA---TCGGC-TACATTA-ATTAG---TATGATA--A----------------------TG-AAGGAAA-G-T-AATTTTCCTGC--ACAAAA---G--TAGGT-ATGTCTGGTGGGATTCTGATAGTTTAATT-GTC-ACACTCCAGCTC-C-C-GATTTTAAC--ATG-TG-----CCGGGCTTC-GTGCTACttgttttttttcaaagact
gi|14 : AAACTTT-TTT-TTAAATACAT-GCCC-TTTGGGCAGACATTTCC--A-TCA-AT--TTTCCCTGCCC-GAAC-----AA--AAATTAAC-ATGC--C-CG-AAAA----TAA-AA-TA--CAGG-AAAA-----GACAG-----GAGATAG-T--TTTTAAATCTTATA-------ACA---CTATT-G-TGACGTTCttggttttttcaaag
gi|15 : cttcacggGGTGT-TTATTAGCT------CACCTTGA--------CAAT----------TTCC--AAAAGCCAATCTCC-CCTTT------TAGC-ACAGAAA-A-ACCCC--A-G----TAAAA-TCACG-------------------TTT---TGTTGCATAACCATACATA-TATGGCCATCTTTTATCAG--TATT-GAA-TA--CAA
gi|16 : CTGAT-GATTGAAAGGAAA-G-C-AATTTTCATGC--GCAAAAT--T---AGAC-ATGTCCGGCGGGCATCTGTTCATGCAATT-TTT-ACATGCCCGCTT-C-T-GATTTTACC--AGA-CC-----ATGGACTTCTGGGTTAa
gi|17 : AGGAAAAG-C-AGTTTTCATGC--ATAAAAT--T--TAGAC-ATGCCCGGCG----TCTGTTCTTGCAATT-TTTCGCATGTCCGTTT-C-C-AATTTTACG--AGGCCC-----CCGGCCATC-AGGCTTCCGtt
gi|18 : AAATTTTATTTATTGAATACAT-GCCC-TTCATGCAGGTATTTCC--A-TCA-AT--TTCACCTGACC-AAAC-----AA--AAATTAAC-ATGC--C-Cggtcattt
gi|19 : agtcttcatgCT----------TTA--ACT--AATAAT-GAA-T----TGAAG-CA---CCACAACTGC--------TAAGT-------CGCACTTG--AA--TTATTC-T------------TA-CGCAAcca
gi|2 : cacaatggatg-TTT-TTGAATACAT-GTCC-TTCGGGCAAGCATTTCC--A-TCA-AT--TTTCCCTGCCA-GAAC-----AA--AAATTAAC-ATGC--T-CG-AAAA----TAA-AA-TA--CAGA-TAAA-----GACTA-----GAGC-TT-GT-TTTTAAATCT---------------------T-G-TGACGTTCATTATT-TA-CAAA---TA---------AG-TAT--TGG-TG-------GGG-----------TTTT--------TG-TTTG--TTT--------ACTT-A-----TATA-ACATA-TGA-A-GTTTTAATT---------AG---TCC--CAAA---ATCT---ATGC-T--G-CA-AGTGCACTTTAAA--AT-TT-CAA--TGCC-ATTT-TGA-TAT-AGTCTGTGT-TTATAAGCT--A---CA-TGTAG--------CA------------TTTC--AAAG-CCA-----A-ACTTT------TA-G-AGGGAAA-A-CCCCC--A-G----CAAAA-TCACGTAACTTAACTTTTGTTGTATTT---TGTTGCATA---ATATATA-T---GCCA---CTTACTTGC-T-TC-ATA-T---CAAT-C-----GAAGATAGCATCT-A-------CA-GTAC-TCTAGACTAAAATTATATGAA-----CTG---GACATAAACTTGCAACAAGGGAAA------------------AACTGACTTCGTTCTTT--ACA--GACGAT-GA--T----TTATG-CA---T-----------------TAAGT-------CGTACTTG--AA-ATTATTC-T------------TA-TTCAAGAGAGTGA---TCGGC-TGTAAGA-ATTGACT--------------------------GAT-GATTGTAAGGAAAAG-C-AATTTTCGTGA--ACAAAAT--TTATAAAC-ATGCCCGGTGGGCTTCTCTTCATGCAATT-TTT-GCATGCCCG-TT-C-CTGATTTTACC--AGG-CCAGGAGTCGGGCATC-GGGCTACCGcgggtgccca
gi|3 : AACTTT-TTT-TTGAACACAT-GCCCCTTCAGGCAGGCATTTC---A-TCA-AT--TTTTCCTGCCC-AGAC-----AA--AAATTAACGATGT--C-CC-GAAA----TAA-AA-TA--CAGA-TGAA-----GACTG-----GAGA-AT-G--TTTTAAATTTC----------ACG---CT--T-GTTGA-ATTCATTA-TATA-CAAT---AA---------AGTTAT--TGG-TG-------GGA-----------TTTT--------TTGTTTACTTTT--------AC---------ATTA-ACAAATTGA-A-GT----GTT---------AG---TCC--CAAA---ATCT---ATGC-T--G-CA-GATGCAC--TAAA--AT-TTGCAA--TGCCAATTT-TG--TAT-AGTCGGTGT-TTATTAGCT--G---CA-TGTGA--------CAAT----------TTTC--AAAGCC--AAATTA-ACTTT------TA-G-AGAGAAA-A-ACCCC--A-G----TAAAA-TCACG-------------------TTT---TGTTGCATA---ATATATA-T---GCCA---CTTACTAGC-T-TT-GTA-T---CAAT-C-----AAAGA-------T-G-------CG-GTAC-T-----CTAAAATTATATGAA-----CTG---GACAT-----------------AA------------------AACT-----------TT--ACA--GACGAT-GA--T----TT-TG------TTA-AA-TGA--------TAAGT-------CGTACTTG--AA-ATTATTC-T------------TATTGC-AGAGAATGA---TCGGCTT-TATGA-ATTGACTTTATGATA--A-AC--AGC-ATGT-CGAT-GATTGTAAGGAAAAG-C-AA-TTTCGGGA--ACAAAA---T--TATAC-ATGCCCGGCAGGCTTCTCTTCATGCAATT-TTT-GC-TGCCCG-TT-C-C-AATTTTACC--AGG--C-----CCGG--ATT--GGCTACCGggttacttcga
gi|4 : agtctttcacgaacAAAACTTT-TTT-TGAAACACAT-GCCC-TTCAGGCAGGCATTTC---A-TCA-AT--TTTTCCTGCCC-AGAC-----AA--AAATTAACAATGC--C-CG-AAAA----TAA-AA-TA--CAGA-TGAA-----GACTG-----GAGA-AT-G--TTTTAAATC------------ACG---TT------TGACATTCATTA-TATA-CAAA---TA---------AGT-AT--TGG-TG-------GGA-----------TTTT--------T--TTTG-TTT---------ACTT-A-----ATTA-ACAAA-TGA-A-GT----GTT---------AG---TCC--CAAA---ATCT---ATGCGT--G-CAGAGTGCACTTTAAA--AT-TT-CAA--TGCC-ATTT-TGA-AAT-AGTCGGTGT-TTATTAGCT--G---CA-TGTGA--------CAAT----------TTTT--AAAGCCCAAAATTA-ACTTT------TAGG-AGAGAAA-A-ACCCC--A-G----TAAAA-TCACG-------------------TTT---TGTTGCATA---ATATATA-T---GCCA---CTTACTAG--T-TT-GTA-T---CAAT-C-----AAAGA-------T-G-------CG-GTAC-T-----CTAAATTAATATGAA-----CTG---GACAT-----------------AA------------------AACT----------GTT--ACA--GACGAT-GA--T----TTATG-TG---TTA-AA-TGA--------TAAGT-------CGTACTTG--AA-ATTATTC-T------------TA-TGCAAGAGAATGA---TCGGC-T-TATGA-ATTGACTTTATGATA--A-AAC-AGC-ATGTCCGAT-GATTGTAAGGAAAAG-CAAATTTTCGGGA--ACAAAAT--T--TATAC-ATG-CCGGCAGGCTTCTCTTCATGCAATT-TTT-GCATGCCCG-TT-C-C-AATTTTACC--AGG-CC-----CCGGGCATT-GGGCTACCGggtta
gi|5 : AAACTTA-CTT-TGAACAACAT-TGCC-TTCGGGCAG-CATTTCATGG-TCACATGCTTTTCCTGCCCCAGACCAAAGAACCAAGTTGACA-TGCAGCGCG-AAAA----TAA-AA-TGACCAGA-TTAATCACTGAGTG-----GAAG-ATAG--TTTTAAGTCTTCATCATGAGGACG---CT--T-G-TGACATTCATTAGTATATCAAAACGTAG--------AGTTATTCTGGTTG-------TTA-----------TTTTTG------T--TTTG-TTTT--------CTTT-ACATAGACTAGACAAA-TGAGA-GT----GCTTATGTGGGAAA---TCCTGCAGAAGCATCTTAAATGC-T--GACA-AGTGCACTTTAAACCAT-TT-CAAT-TGCC-ATTT-TGAGTATAAGTC-GTGTATTA-TAGCTGAG---CA-TGTGACTCGAAGCCAGTTGTTACATCGTTTCCGAAAGCCAAAAATTATACTTTAGAAGGTGGA-AAGGAAATATACCCCCGA-GATTATAAAA-TCTCGCCC----------------CTT---TCTTGCAAA---A---ATA-T---GCCAAT-CTTAC
gi|6 : AAAACTTT-TTT--GAAACACAT--CCC-TTCGGGCAGGCATTTTC--ATTCA-AT--TTTTCC-GCCCAGAAC-----AA--AAATT-AC-ATGC--C-CG-AAAAAATTTAATAACTA--CAGATTGAA-----GACTG-----GAGA-AT-G--TTTTAAATCTTATATA-----ACG---CT--T-G-TGACATTCATTA-TATA-CAAA---TA---------AG-TAT--TGG-TGTTTTTTAGGGGGCGTTTTTTTTTTT--------T--TTTA-TTTTGTTTGTTAACTTAA-----ATTA-AC-AA-TGA-AGGT----GTT---------AG---TCC--AAAA---ATCT---ATGC-TTGG-CA-AGTGCACTTTAAA--ATATT-CAAATTGCC-ATTTGTGAATATAAGTCGGTGT-TTATTAGCT--GGCACA-TGTGA--------CA------------TTTC--AAAAAACCAAATTA-ACCTT------TAGACAGGAAAA-A-ACCCC--A-G----TAAAATTCACG-------------------TTT---TGTTGCATA---AAAAATATT---GCCA---CTTACTAAGCT-TT-GTATT---CAATACTGATAAAAGA-------T-G-------gttgcttttagtcatatc
gi|7 : tcttcacggaAAATGAACATGAAGACAACTGCAAAACATCT---------------AC------------------AATT----------TTTCTACA--G-TGAT-GA--T----TTATG-GA---TTATAA-TGA--------TAAGTA------CGTACT-G--AA-----TCC-T------------TA-TGCAAGAGA-TGA---TCGGC-TGTATGA-ATTGACTTTATCTTA--A-ACCAAGC-ATGTCCGATTGATTGTAGAAAAAAGGC-A--TTTCAGGA--ACAAAAAAAT--TACAC-ATGCCCGGCGGGGTTCTCTTCATGCCATT-TTT-GCATGCCCG-TTCC-C-AATTTTACCCAGGG-CC-----CCGGGTATC-GTGCTACCG
gi|8 : atcaaagaagaaagtcttataaaaacgtaactatacataTT--ACA----CAAT-GG--TGAGGTTATG-CT---TTA-AA-TGT--------TAAGTTGTACAGTGTACTTG--AA-AGTATTCATGAATGGAAGAGGTG-CCCATGAGAATGACAGTCTGT-T-TA--A-ATTGTTTTTATTATA--A-A---AACTATGTCC-AT-GATTGAAAGG-AAAG-C-AATTCTCTTGC--ATGAAA---T--TAAAC-ATGCCCGACggtatttcgaaggga
gi|9 : tatcccctatatgcttcatgatcacatacagcatctactctaaaactatctgagcaggacacaaacttgcaactggggatcgactatttcttacaaccccgctaaacaaagcattgttgccaatgttgc-------------------TTT---TGTTGCTTA---ATATTTA-T---GCCA---CTTGCTAG--C-TT-CGA-TTCGTGAT-C-----AAAGA-------TAG-------CATCTACTT-----TTAAAATTATATGAG-----ATG---GACAC-----------------AA------------------ACTT----------GCA--ACT--GGGGACAGACTT----TTATACCACTTTTA-AA-AAA--------TAA-T-------CATAGTTGGCAACATTGT---T------------TA-C---AGATGGTGA---T-----T-TATGC-ATTt
gi|9 : agaagcgtatagtttaactttgtaTT--ACA--GATGGT-GA--T----TTATG-CA---TTT-AA-AGT--------TAAGT-------TGTACTTG--AA-ATT---------------------------AGAATGA---TCAGCAG-CATGT-ACTGACTTTATCAT-----A---AAC-ATGTCtaaagttaagttgtacttgaaattagaatgatcagcagcatgtactgactttatcataaacatgtca
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|20 ): TTGGACCAAACGTTCTTGTAAACACCAATACCGT
Alignments
lowQualScore : 11 111111 11 1111 11111 11111 666666666666666666666 1 111 333333333 555555555555555555555555555555555555 33333333333333333333 1111 222222222 111 111 111 11 111 11 222222 4444444444444444444444 1111 111111 111 1111 4444444444444444444 111 22 11111 11111 222222222 1 22222222 111 9999999999999999999 222222222222222222222 111111111 1111111 222222222222 111 222222222 2222222
lowQualScore : 5 555 1 999 0 66 5 5 5 66 1 11 444444 44 66 5 5 2222 5 5 77 66 44444 44444 5 9999 5 111111111111111111111 5 3 6 111 333333333 9 99 6 222222222222222222222222222222222222 6 11111111111111111111 6 6 6 6 4444 666666666 111 99 111 111 6 99 6 6 99 6 6 55 6 6 222 44 0 5 333333 5 2222222222222222222222 77 4 2222 1 5 666666 555 5 5 8888 2222 5 7777777777777777777 888 888 0 5 888 555 55 5 88888 6 66666 666666666 6 33333333 6 1 6 000 5555555555555555555 888888888888888888888 66 55 9999 999999 8 4 666666666 7777777 55 4 4 000000000000 777 0 666 11 666 3 0 3 2 555555555 3 11 3 4 1 5 3 3 2 1 44 2222222 2 3 0 1 3 3 3 4 55 3 99999 3
lowQualScore : . ... . ... . .. . . . .. . .. ...... .. .. . . .... . . .. .. ..... ..... . .... . ..................... . . . ... ......... . .. . .................................... . .................... . . . . .... ......... ... .. ... ... . .. . . .. . . .. . . ... .. . . ...... . ...................... .. . .... . . ...... ... . . .... .... . ................... ... ... . . ... ... .. . ..... . ..... ......... . ........ . . . ... ................... ..................... .. .. .... ...... . . ......... ....... .. . . ............ ... . ... .. ... . . . . ......... . .. . . . . . . . . .. ....... . . . . . . . . .. . ..... .
lowQualScore : 0 111 1 444 2 99 0 0 0 99 1 99 444444 55 99 0 7 1111 7 7 99 11 33333 33333 7 4444 7 999999999999999999999 7 3 7 777 333333333 8 22 7 222222222222222222222222222222222222 7 77777777777777777777 7 7 7 7 2222 777777777 777 22 777 777 7 22 7 7 22 7 7 88 7 7 555 77 7 7 000000 7 1111111111111111111111 99 3 1111 4 7 444444 333 7 7 0000 1111 7 5555555555555555555 888 888 4 0 888 666 00 7 11111 7 77777 000000000 0 55555555 7 0 7 000 0000000000000000000 111111111111111111111 11 22 4444 111111 0 0 999999999 0000000 55 0 0 555555555555 000 7 444 99 444 3 5 5 3 666666666 6 66 6 5 2 4 3 3 4 0 66 9999999 3 3 2 4 6 6 6 9 00 6 11111 6
consensus : AAAACTTT-TTT-TTAAACACAT-G-CCCTTCGGGCAGGCATTTCC--A-T-CA-AT--TTTCCCTGCCC--GAACAAAAA------TTAACAATGC--C-CG-AAAA----TAA-AA-TA--CAGAT-GAA-----GACTG-----GAGA-AT-G--TTTT-AAATCTT----------A-----CGC--TTG-TGACGTTCATTA-TATA-CAAA---TA---------AGTTAT--TGG-TG-------GGG-----------TTTT--------T--TTTG-TTTT--------ACTT-A-----ATTA-ACAAA-TGA-A-GT----GTT---------AG---TCC--CAAA---ATCT---ATGC-T--G-CA-AGTGCACTTTAAA--AT-TT-CAA--TGCC-ATTT-TG-A-TATAAGTCGGTGT-TTATTAGCT--G---CA-TGTGA--------CAAT----------TTTC--AAAGCCCAAAATTA-ACTTT------TAGG-AGGGAAA-A-ACCCC--A-G----TAAAA-TCACG-------------------TTT---TGTTGCATA---ATATATA-T---GCCA---CTTACTAGC-T-TCGTA-T---CAAT-C-----AAAGA-------T-GCGTGTAC--T-----C-TAAAAT-TATATGAACTG---GACAC------------------AAAACT----------T----TT----ACA--GACGATGA-T----TTATG-CA---TTA-AA-TG--------NTAAGT-------CGTACTTG--AA-ATTATTC-T------------TA-CGCAAGAGAATGA---TCGGC-T-TATGA-ATTGACTTTATNATA--A-A---AAC-ATGTCCGAT-GATTGNAAGGAAAAG-C-AATTTTCNTGC--ACAAAAT--T--TAGAC-ATGCCCGGCGGGCTTCTGTTCATGCAATT-TTT-GCATGCCCGCTCCCGATTTTACC--AGG-CC-----CCGGGCATC-GGGCTACCG
Reference ( family-7901 ) : AAAACTTT-TTT-TTAAACACAT-G-CCCTTCGGGCAGGCATTTCC--A-T-CA-AT--TTTCCCTGCCC--GAACAAAAA------TTAACAATGC--C-CG-AAAA----TAA-AA-TA--CAGAT-GAA-----GACTG-----GAGA-AT-G--TTTT-AAATCTT----------A-----CGC--TTG-TGACGTTCATTA-TATA-CAAA---TA---------AGTTAT--TGG-TG-------GGG-----------TTTT--------T--TTTG-TTTT--------ACTT-A-----ATTA-ACAAA-TGA-A-GT----GTT---------AG---TCC--CAAA---ATCT---ATGC-T--G-CA-AGTGCACTTTAAA--AT-TT-CAA--TGCC-ATTT-TG-A-TATAAGTCGGTGT-TTATTAGCT--G---CA-TGTGA--------CAAT----------TTTC--AAAGCCCAAAATTA-ACTTT------TAGG-AGGGAAA-A-ACCCC--A-G----TAAAA-TCACG-------------------TTT---TGTTGCATA---ATATATA-T---GCCA---CTTACTAG--T-TTGTA-T---CAAT-C-----AAAGA-------T-GCG-GTAC--T-----C-TAAANT-TATATGAACTG---GACAT------------------AAAACT----------T----TT----ACA--GACGATGA-T----TTATG-CA---TTA-AA-TG--------NTAAGT-------CGTACTTG--AA-ATTATTC-T------------TA-CGCAAGAGAATGA---TCGGC-T-TATGA-ATTGACTTTATNATA--A-A---AAC-ATGTCCGAT-GATTGNAAGGAAAAG-C-AATTTTCNTGC--ACAAAAT--T--TAGAC-ATGCCCGGCGGGCTTCTGTTCATGCAATT-TTT-GCATGCCCGCTTCCGATTTTACC--AGG-CC-----CCGGGCATC-GGGCTACCG
gi|1 : AACTTT-TTT-GTAAATACATTG-CCCTTTGGGCAGA-ATTTCC--AGT-CA-AT--TTTCCCT-CCC--GAACAAAAA------TTAA-AATGC--C-CGGAAAA----TAA-A--TA--CAGGA-AAA-----GACTGTCACAGAGA-TT-AGTTTTT-AAATCTT----------ATAATACTA--TTG-TGACGTTCATCAGTATA-CAAA---TACCGTATTGTGGTCTT--TGT-TG-------TTG-----------TTTTGTCTAATAT--TTTT-TTAT--------ACTT-A-----ATTA-ACAAA-TGA-A-GT----TCT---------AGACGTCC--TAAA---ATCT---ATGC-T--G-CA-AGTGCATTTAAAA--GT-TC-CAA--TGCC-ATTT-T--A-TATA-GTCGGTGT-TTATAAGCTT-G---CA-TGTGG--------CA------------TTTC--AAAGCC----A--A-ACGTT------TAG--AGGGAAA-A-CCCCC--CTG----CAAAA-TCACA-------------------TTTAACT-TTGTAT-----TTTATA-T---GCCA---CTTACGAAC-T-TCGTATT---CAAT-C-----AAAGA-------TAGCATCTACGAT-----CGCAAAATGTATATGAAACG---GACACAAACATGCAACTAGGGAAAAAACT----------C----TG----ACATCGACGGTA-------TTATG-CA---TTA-AT-TGCCATAAAAATAAGT-------CTTACTTG--AA-AGTAGTC-T------------TG-CGCAAGAGAATGA---T--GC-T-TATGA-ATT-ACTTTTTGAT-----A---AAC-ATGTCCG-T-GA-TGTAA-GAAATG-C-AA-TTTCGTGCGAACAAA----T--TAAACGATGCCCGGCAGGATTCC-TTCATGCAATCGTTT-GCATGCCCCTTCCCGA--TTACC--AGG-CC-----CCGGGCATC-GGGCTACCG
gi|10 : gtcttcactggA---TCA-AG-TG--------CTAAGT-------TGCACTTG--AA-ATTATTC-T------------TA-CACAAGAG-GT--------GC-C-CATGAGAATGA-TCTGCTATA--ATA---AAC-ATGTCTGAG-GATTGAAAGG-AAAG-C-AATTTTCTTGC--ACAAAA-------------------------TTCTGTTCATGCAATT-TTT-ACATGCCCACTTCTGATTTTACC--AGG-CC-----CCGGGCATC-GGGCTACggttatttcggaagac
gi|11 : acgcattgttgatgcttttactaaaacatctgtacaactgtgattaagcatcaagtgctaagttGA-ATTGACTGTATAATATTA-A---AAC-ATGTCTGAT-GATTGAAAGGAAA-G-C-AATTTTGTTGT--GCAAAAT--T---AGAC-ATGCCCGGTGGGCTTCTGCTCATGCAATT-TTT-ACATGCCTGCTCTCAATTTTATC--AGG-CC-----CCGGGCATC-AGGCTACCggggttattttgaag
gi|12 : ttagtaatacaaatatgttcttaaaATAA---TCGGC-TGTATGA--TTGGCTATATTA-A--T-T---AAC-TTG----AT-AAT--GAAG--AAAG-C-AACTTTCCTGC--ACAAAAG--T---AGGT-ATGTCTGGCGTGCTTCTGGTTGTTTAATT-GTT-ATACTCCAGCTCCCGA-TTTAAC--GTG-TG-----CCGGGCTTC-GTGCTACagattattttaaa
gi|13 : ATGA---TCGGC-TACATTA-ATTAG---TATGATA--A----------------------TG-AAGGAAA-G-T-AATTTTCCTGC--ACAAAAG--T---AGGT-ATGTCTGGTGGGATTCTGATAGTTTAATT-GTC-ACACTCCAGCTCCCGATTTTAAC--ATG-TG-----CCGGGCTTC-GTGCTACttgttttttttcaaagact
gi|14 : AAACTTT-TTT-TTAAATACAT-G-CCCTTTGGGCAGACATTTCC--A-T-CA-AT--TTTCCCTGCCC--GAACAAAAA------TTAAC-ATGC--C-CG-AAAA----TAA-AA-TA--CAGGA-AAA-----GACAG-----GAGATAG-T--TTTT-AAATCTTATA-------A-----CACTATTG-TGACGTTCttggttttttcaaag
gi|15 : cttcacggGGTGT-TTATTAGCT------CACCTTGA--------CAAT----------TTCC--AAAAGCCAATCTCC-CCTTT------TAGC-ACAGAAA-A-ACCCC--A-G----TAAAA-TCACG-------------------TTT---TGTTGCATAACCATACATA-TATGGCCATCTTTTATCAG--TATTGAA-TA--CAA
gi|16 : CTGAT-GATTGAAAGGAAA-G-C-AATTTTCATGC--GCAAAAT--T---AGAC-ATGTCCGGCGGGCATCTGTTCATGCAATT-TTT-ACATGCCCGCTTCTGATTTTACC--AGA-CC-----ATGGACTTCTGGGTTAa
gi|17 : AGGAAAAG-C-AGTTTTCATGC--ATAAAAT--T--TAGAC-ATGCCCGGCG----TCTGTTCTTGCAATT-TTTCGCATGTCCGTTTCCAATTTTACG--AGGCCC-----CCGGCCATC-AGGCTTCCGtt
gi|18 : AAATTTTATTTATTGAATACAT-G-CCCTTCATGCAGGTATTTCC--A-T-CA-AT--TTCACCTGACC--AAACAAAAA------TTAAC-ATGC--C-Cggtcattt
gi|19 : agtcttcatgCT----------T----TA----ACT--AATAATGAAT----TGAAG-CA---CCACAACTG--------CTAAGT-------CGCACTTG---A-ATTATTC-T------------TA-CGCAAcca
gi|2 : cacaatggatg-TTT-TTGAATACAT-G-TCCTTCGGGCAAGCATTTCC--A-T-CA-AT--TTTCCCTGCCA--GAACAAAAA------TTAACA-TGC--T-CG-AAAA----TAA-AA-TA--CAGAT-AAA-----GACTA-----GAGC-TT-G--TTTTTAAATCTT-----------------------G-TGACGTTCATTA-TTTA-CAAA---TA---------AGT-AT--TGG-TG-------GGG-----------TTTT--------TG-TTTG-TTT---------ACTT-A-----TATA-ACATA-TGA-A-GTTTTAATT---------AG---TCC--CAAA---ATCT---ATGC-T--G-CA-AGTGCACTTTAAA--AT-TT-CAA--TGCC-ATTT-TG-A-TAT-AGTCTGTGT-TTATAAGCT--A---CA-TGTAG--------CA------------TTTC--AAAG-CCA-----A-ACTTT------TA-G-AGGGAAA-A-CCCCC--A-G----CAAAA-TCACGTAACTTAACTTTTGTTGTATTT---TGTTGCATA---ATATATA-T---GCCA---CTTACTTGC-T-TCATA-T---CAAT-C-----GAAGATAGCATCT-ACA-GTAC--TCTAGAC-TAAAAT-TATATGAACTG---GACATAAACTTGCAACAAGGGA-AAAACTGACTTCGTTCT----TT----ACA--GACGATGA-T----TTATG-CA---T-----------------TAAGT-------CGTACTTG--AA-ATTATTC-T------------TA-TTCAAGAGAGTGA---TCGGC-TGTAAGA-ATTGACT--------------------------GAT-GATTGTAAGGAAAAG-C-AATTTTCGTGA--ACAAAAT--TTATAAAC-ATGCCCGGTGGGCTTCTCTTCATGCAATT-TTT-GCATGCCCGTTCCTGATTTTACC--AGG-CCAGGAGTCGGGCATC-GGGCTACCGcgggtgccca
gi|3 : AACTTT-TTT-TTGAACACAT-GCCCCTTCAGGCAGGCATTT-C--A-T-CA-AT--TTTTCCTGCCC--AGACAAAAA------TTAACGATGT--C-CC-GAAA----TAA-AA-TA--CAGAT-GAA-----GACTG-----GAGA-AT-G--TTTT-AAATTTC----------A-----CGC--TTGTTGA-ATTCATTA-TATA-CAAT---AA---------AGTTAT--TGG-TG-------GGA-----------TTTT--------TTGTTTACTTTT--------AC---------ATTA-ACAAATTGA-A-GT----GTT---------AG---TCC--CAAA---ATCT---ATGC-T--G-CA-GATGCAC--TAAA--AT-TTGCAA--TGCCAATTT-TG---TAT-AGTCGGTGT-TTATTAGCT--G---CA-TGTGA--------CAAT----------TTTC--AAAGCC--AAATTA-ACTTT------TA-G-AGAGAAA-A-ACCCC--A-G----TAAAA-TCACG-------------------TTT---TGTTGCATA---ATATATA-T---GCCA---CTTACTAGC-T-TTGTA-T---CAAT-C-----AAAGA-------T-GCG-GTAC--T-----C-TAAAAT-TATATGAACTG---GACAT------------------AAAAC-----------T----TT----ACA--GACGATGA-T----TT-TG------TTA-AA-TG--------ATAAGT-------CGTACTTG--AA-ATTATTC-T------------TATTGC-AGAGAATGA---TCGGCTT-TATGA-ATTGACTTTATGATA--A-AC--AGC-ATGT-CGAT-GATTGTAAGGAAAAG-C-AA-TTTCGGGA--ACAAAA---T--TATAC-ATGCCCGGCAGGCTTCTCTTCATGCAATT-TTT-GC-TGCCCG-TTCCAATTTTACC--AGG--C-----CCGG--ATT--GGCTACCGggttacttcga
gi|4 : agtctttcacgaacAAAACTTT-TTT-TGAAACACAT-G-CCCTTCAGGCAGGCATTTC---A-T-CA-AT--TTTTCCTGCCC--AGACAAAAA------TTAACAATGC--C-CG-AAAA----TAA-AA-TA--CAGAT-GAA-----GACTG-----GAGA-AT-G--TTTT-AAATC------------A-----CGT--TTG---ACATTCATTA-TATA-CAAA---TA---------AGT-AT--TGG-TG-------GGA-----------TTTT--------T--TTTG-TTT---------ACTT-A-----ATTA-ACAAA-TGA-A-GT----GTT---------AG---TCC--CAAA---ATCT---ATGCGT--G-CAGAGTGCACTTTAAA--AT-TT-CAA--TGCC-ATTT-TG-A-AATA-GTCGGTGT-TTATTAGCT--G---CA-TGTGA--------CAAT----------TTTT--AAAGCCCAAAATTA-ACTTT------TAGG-AGAGAAA-A-ACCCC--A-G----TAAAA-TCACG-------------------TTT---TGTTGCATA---ATATATA-T---GCCA---CTTACTAG--T-TTGTA-T---CAAT-C-----AAAGA-------T-GCG-GTAC--T-----C-TAAATT-AATATGAACTG---GACAT------------------AAAACT----------G----TT----ACA--GACGATGA-T----TTATG-TG---TTA-AA-TG--------ATAAGT-------CGTACTTG--AA-ATTATTC-T------------TA-TGCAAGAGAATGA---TCGGC-T-TATGA-ATTGACTTTATGATA--A-AAC-AGC-ATGTCCGAT-GATTGTAAGGAAAAG-CAAATTTTCGGGA--ACAAAAT--T--TATAC-ATG-CCGGCAGGCTTCTCTTCATGCAATT-TTT-GCATGCCCG-TTCCAATTTTACC--AGG-CC-----CCGGGCATT-GGGCTACCGggtta
gi|5 : AAACTTA-CTT-TGAACAACAT-T-GCCTTCGGGCAG-CATTTCATGG-T-CACATGCTTTTCCTGCCCCAGACCAAAGAACCAAGTTGACA-TGCAGCGCG-AAAA----TAA-AA-TGACCAGAT-TAATCACTGAGTG-----GAAG-ATAG--TTTT-AAGTCTTCATCATGAGGA-----CGC--TTG-TGACATTCATTAGTATATCAAAACGTAG--------AGTTATTCTGGTTG-------TTA-----------TTTTTG------T--TTTG-TTTT--------CTTT-ACATAGACTAGACAAA-TGAGA-GT----GCTTATGTGGGAAA---TCCTGCAGAAGCATCTTAAATGC-T--GACA-AGTGCACTTTAAACCAT-TT-CAAT-TGCC-ATTT-TG-AGTATAAGTC-GTGTATTA-TAGCTGAG---CA-TGTGACTCGAAGCCAGTTGTTACATCGTTTCCGAAAGCCAAAAATTATACTTTAGAAGGTGGA-AAGGAAATATACCCCCGA-GATTATAAAA-TCTCGCCC----------------CTT---TCTTGCAAA---A---ATA-T---GCCAAT-CTTAC
gi|6 : AAAACTTT-TTT-G-AAACACAT---CCCTTCGGGCAGGCATTTTC--A-TTCA-AT--TTTTCC-GCCCA-GAACAAAAA------TTA-CA-TGC--C-CG-AAAAAATTTAATAACTA--CAGATTGAA-----GACTG-----GAGA-AT-G--TTTT-AAATCTT----------ATATAACGC--TTG-TGACATTCATTA-TATA-CAAA---TA---------AG-TAT--TGG-TGTTTTTTAGGGGGCGTTTTTTTTTTT--------T--TTTA-TTTTGTTTGTTAACTTAA-----ATTA-AC-AA-TGA-AGGT----GTT---------AG---TCC--AAAA---ATCT---ATGC-TTGG-CA-AGTGCACTTTAAA--ATATT-CAAATTGCC-ATTTGTGAA-TATAAGTCGGTGT-TTATTAGCT--GGCACA-TGTGA--------CA------------TTTC--AAAAAACCAAATTA-ACCTT------TAGACAGGAAAA-A-ACCCC--A-G----TAAAATTCACG-------------------TTT---TGTTGCATA---AAAAATATT---GCCA---CTTACTAAGCT-TTGTATT---CAATACTGATAAAAGA-------T-Ggttgcttttagtcatatc
gi|7 : tcttcacggaAACTGCAAAACATCT----------------ACAATT----------T----TTCT--ACA--G-TGATGA-T----TTATG-GA---TTATAA-TG--------ATAAGTA------CGTACT-G--AA-----TCC-T------------TA-TGCAAGAGA-TGA---TCGGC-TGTATGA-ATTGACTTTATCTTA--A-ACCAAGC-ATGTCCGATTGATTGTAGAAAAAAGGC-A--TTTCAGGA--ACAAAAAAAT--TACAC-ATGCCCGGCGGGGTTCTCTTCATGCCATT-TTT-GCATGCCCGTTCCCAATTTTACCCAGGG-CC-----CCGGGTATC-GTGCTACCG
gi|8 : atcaaagaagaaagtcttataaaaacgtaactatacataaaatgaacatgaagacTAC--T-----C-TAAAAC-TATCTGAGCAG---GACAC-------------------AAACT----------T----ggtatttcgaaggga
gi|8 : tatcccctatatgcttcatgatcacatacagcatc----TT----ACA----CAATGG-TGAGGTTATG-CT---TTA-AA-TG--------TTAAGTTGTACAGTGTACTTG--AA-AGTATTCATGAATGGAAGAGGTG-CCCATGAGAATGACAGTCTGT-T-TA--A-ATTGTTTTTATTATA--A-A---AACTATGTCC-AT-GATTGAAAGG-AAAG-C-AATTCTCTTGC--ATGAAA---T--TAAAC-ATGCCCGACgcaactggggatcgactatttcttacaaccccgctaaacaaagcattgttgccaatgttgcttacacaatggtgaggttatgctttaaatgttaagttgtacagtgtacttgaaagtattcatgaatggaagaggtgcccatgagaatgacagtctgtttaaattgtttttattataaaaactatgtccatgattgaaaggaaagcaattctcttgcatgaaattaaacatgcccgact
gi|9 : tatcccctatatgcttcatgatcacatacagcatctactctaaaactatctgagcaggacacaaacttgcaactggggatcgactatttcttacaaccccgctaaacaaagcattgttgccaatgttgc-------------------TTT---TGTTGCTTA---ATATTTA-T---GCCA---CTTGCTAG--C-TTCGA-TTCGTGAT-C-----AAAGA-------TAGCATCTACT-T-----T-TAAAAT-TATATGAGATG---GACAC-------------------AAACT----------TGCAACTGGGGACA--GAC--T---T----TTATACCACTTTTA-AA-AA--------ATAA-T-------CATAGTTGGCAACATTGT---T------------TA-C---AGATGGTGA---T-----T-TATGC-ATTt
gi|9 : agaagcgtatagtttaactttgta----------T----TT----ACA--GATGGTGA-T----TTATG-CA---TTT-AA-AG--------TTAAGT-------TGTACTTG--AA-ATT---------------------------AGAATGA---TCAGCAG-CATGT-ACTGACTTTATCAT-----A---AAC-ATGTCtaaagttaagttgtacttgaaattagaatgatcagcagcatgtactgactttatcataaacatgtca
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|20 ): TTGGACCAAACGTTCTTGTAAACACCAATACCGT
Alignments
lowQualScore : 11 111111 11 1111 11111 11111 666666666666666666666 1 111 333333333 555555555555555555555555555555555555 33333333333333333333 1111 222222222 111 111 111 11 111 11 222222 4444444444444444444444 1111 111111 111 1111 4444444444444444444 11 111 11111 1 22222222 22222222 9999999999999999999999999999999999999999999999999999999999999 111111111 1111111 222222222222 111 222222222 2222222
lowQualScore : 5 555 1 999 0 66 5 5 5 66 1 11 444444 44 66 5 5 2222 5 5 77 66 44444 44444 5 9999 5 111111111111111111111 5 3 6 111 333333333 9 99 6 222222222222222222222222222222222222 6 11111111111111111111 6 6 6 6 4444 666666666 111 99 111 111 6 99 6 6 99 6 6 55 6 6 222 44 0 5 333333 5 2222222222222222222222 77 4 2222 1 5 666666 555 5 5 8888 2222 5 7777777777777777777 888 888 0 5 888 11 555 111 77 5 44444 7 77777777 33333333 5 55 5 5 4 5555555555555555555555555555555555555555555555555555555555555 66 55 9999 999999 8 4 666666666 7777777 55 44 4 000000000000 777 0 666 11 666 3 0 3 2 555555555 3 11 3 4 1 5 3 3 2 1 44 2222222 2 3 0 1 3 3 3 4 55 3 99999 3
lowQualScore : . ... . ... . .. . . . .. . .. ...... .. .. . . .... . . .. .. ..... ..... . .... . ..................... . . . ... ......... . .. . .................................... . .................... . . . . .... ......... ... .. ... ... . .. . . .. . . .. . . ... .. . . ...... . ...................... .. . .... . . ...... ... . . .... .... . ................... ... ... . . ... .. ... ... .. . ..... . ........ ........ . .. . . . ............................................................. .. .. .... ...... . . ......... ....... .. .. . ............ ... . ... .. ... . . . . ......... . .. . . . . . . . . .. ....... . . . . . . . . .. . ..... .
lowQualScore : 0 111 1 444 2 99 0 0 0 99 1 99 444444 55 99 0 7 1111 7 7 99 11 33333 33333 7 4444 7 999999999999999999999 7 3 7 777 333333333 8 22 7 222222222222222222222222222222222222 7 77777777777777777777 7 7 7 7 2222 777777777 777 22 777 777 7 22 7 7 22 7 7 88 7 7 555 77 7 7 000000 7 1111111111111111111111 99 3 1111 4 7 444444 333 7 7 0000 1111 7 5555555555555555555 888 888 4 0 888 99 999 999 99 7 33333 1 22222222 55555555 7 55 0 0 5 1111111111111111111111111111111111111111111111111111111111111 11 22 4444 111111 0 0 999999999 0000000 55 88 0 555555555555 000 7 444 99 444 3 5 5 3 666666666 6 66 6 5 2 4 3 3 4 0 66 9999999 3 3 2 4 6 6 6 9 00 6 11111 6
consensus : AAAACTTT-TTT-TTAAACACAT-G-CCCTTCGGGCAGGCATTTCC--A-T-CA-AT--TTTCCCTGCCC--GAACAAAAA------TTAACAATGC--C-CG-AAAA----TAA-AA-TA--CAGAT-GAA-----GACTG-----GAGA-AT-G--TTTT-AAATCTT----------A-----CGC--TTG-TGACGTTCATTA-TATA-CAAA---TA---------AGTTAT--TGG-TG-------GGG-----------TTTT--------T--TTTG-TTTT--------ACTT-A-----ATTA-ACAAA-TGA-A-GT----GTT---------AG---TCC--CAAA---ATCT---ATGC-T--G-CA-AGTGCACTTTAAA--AT-TT-CAA--TGCC-ATTT-TG-A-TATAAGTCGGTGT-TTATTAGCT--G---CA-TGTGA--------CAAT----------TTTC--AAAGCCCAAAATTA-ACTTT------TAGG-AGGGAAA-A-ACCCC--A-G----TAAAA-TCACG-------------------TTT---TGTTGCATA---ATATATA-T---GCCA--CTTAC-T-AGCTTCGT-A-TC--AAT-C-----AAAGATAGCGT-----NTAC--T-----C-TAAAAT-TA-T-ATGAACTGGACA----C------------------AAAAC-----------T----------T----TT----ACA--GACGATGA-T----TTATG-CA---TTA-AA-TG--------NTAAGT-------CGTACTTG--AA-ATTATTC-T------------TA-CGCAAGAGAATGA---TCGGC-T-TATGA-ATTGACTTTATNATA--A-A---AAC-ATGTCCGAT-GATTGNAAGGAAAAG-C-AATTTTCNTGC--ACAAAAT--T--TAGAC-ATGCCCGGCGGGCTTCTGTTCATGCAATT-TTT-GCATGCCCGCTCCCGATTTTACC--AGG-CC-----CCGGGCATC-GGGCTACCG
Reference ( family-7901 ) : AAAACTTT-TTT-TTAAACACAT-G-CCCTTCGGGCAGGCATTTCC--A-T-CA-AT--TTTCCCTGCCC--GAACAAAAA------TTAACAATGC--C-CG-AAAA----TAA-AA-TA--CAGAT-GAA-----GACTG-----GAGA-AT-G--TTTT-AAATCTT----------A-----CGC--TTG-TGACGTTCATTA-TATA-CAAA---TA---------AGTTAT--TGG-TG-------GGG-----------TTTT--------T--TTTG-TTTT--------ACTT-A-----ATTA-ACAAA-TGA-A-GT----GTT---------AG---TCC--CAAA---ATCT---ATGC-T--G-CA-AGTGCACTTTAAA--AT-TT-CAA--TGCC-ATTT-TG-A-TATAAGTCGGTGT-TTATTAGCT--G---CA-TGTGA--------CAAT----------TTTC--AAAGCCCAAAATTA-ACTTT------TAGG-AGGGAAA-A-ACCCC--A-G----TAAAA-TCACG-------------------TTT---TGTTGCATA---ATATATA-T---GCCA--CTTAC-T-AGCTTCGT-A-TC--AAT-C-----AAAGAT-GCGT-----GTAC--T-----C-TAAAAT-TA-T-ATGAACTGGACA----C------------------AAAAC-----------T----------T----TT----ACA--GACGATGA-T----TTATG-CA---TTA-AA-TG--------NTAAGT-------CGTACTTG--AA-ATTATTC-T------------TA-CGCAAGAGAATGA---TCGGC-T-TATGA-ATTGACTTTATNATA--A-A---AAC-ATGTCCGAT-GATTGNAAGGAAAAG-C-AATTTTCNTGC--ACAAAAT--T--TAGAC-ATGCCCGGCGGGCTTCTGTTCATGCAATT-TTT-GCATGCCCGCTCCCGATTTTACC--AGG-CC-----CCGGGCATC-GGGCTACCG
gi|1 : AACTTT-TTT-GTAAATACATTG-CCCTTTGGGCAGA-ATTTCC--AGT-CA-AT--TTTCCCT-CCC--GAACAAAAA------TTAA-AATGC--C-CGGAAAA----TAA-A--TA--CAGGA-AAA-----GACTGTCACAGAGA-TT-AGTTTTT-AAATCTT----------ATAATACTA--TTG-TGACGTTCATCAGTATA-CAAA---TACCGTATTGTGGTCTT--TGT-TG-------TTG-----------TTTTGTCTAATAT--TTTT-TTAT--------ACTT-A-----ATTA-ACAAA-TGA-A-GT----TCT---------AGACGTCC--TAAA---ATCT---ATGC-T--G-CA-AGTGCATTTAAAA--GT-TC-CAA--TGCC-ATTT-T--A-TATA-GTCGGTGT-TTATAAGCTT-G---CA-TGTGG--------CA------------TTTC--AAAGCC----A--A-ACGTT------TAG--AGGGAAA-A-CCCCC--CTG----CAAAA-TCACA-------------------TTTAACT-TTGTAT-----TTTATA-T---GCCA--CTTAC-G-AACTTCGT-ATTC--AAT-C-----AAAGATAGCAT-----CTACGAT-----CGCAAAATGTA-T-ATGAAACGGACA----CAAACATGCAACTAGGGAAAAAAC-----------T----------C----TG----ACATCGACGGTA-------TTATG-CA---TTA-AT-TGCCATAAAAATAAGT-------CTTACTTG--AA-AGTAGTC-T------------TG-CGCAAGAGAATGA---T--GC-T-TATGA-ATT-ACTTTTTGAT-----A---AAC-ATGTCCG-T-GA-TGTAA-GAAATG-C-AA-TTTCGTGCGAACAAA----T--TAAACGATGCCCGGCAGGATTCC-TTCATGCAATCGTTT-GCATGCCCCTTCCCGA--TTACC--AGG-CC-----CCGGGCATC-GGGCTACCG
gi|10 : gtcttcactggA---TCA-AG-TG--------CTAAGT-------TGCACTTG--AA-ATTATTC-T------------TA-CACAAGAG-GT--------GC-C-CATGAGAATGA-TCTGCTATA--ATA---AAC-ATGTCTGAG-GATTGAAAGG-AAAG-C-AATTTTCTTGC--ACAAAA-------------------------TTCTGTTCATGCAATT-TTT-ACATGCCCACTTCTGATTTTACC--AGG-CC-----CCGGGCATC-GGGCTACggttatttcggaagac
gi|11 : acgcattgttgatgcttttactaaaacatctgtacaactgtgattaagcatcaagtgctaagttGA-ATTGACTGTATAATATTA-A---AAC-ATGTCTGAT-GATTGAAAGGAAA-G-C-AATTTTGTTGT--GCAAAAT--T---AGAC-ATGCCCGGTGGGCTTCTGCTCATGCAATT-TTT-ACATGCCTGCTCTCAATTTTATC--AGG-CC-----CCGGGCATC-AGGCTACCggggttattttgaag
gi|12 : ttagtaatacaaatatgttcttaaaATAA---TCGGC-TGTATGA--TTGGCTATATTA-A--T-T---AAC-TTG----AT-AAT--GAAG--AAAG-C-AACTTTCCTGC--ACAAAAG--T---AGGT-ATGTCTGGCGTGCTTCTGGTTGTTTAATT-GTT-ATACTCCAGCTCCCGA-TTTAAC--GTG-TG-----CCGGGCTTC-GTGCTACagattattttaaa
gi|13 : ATGA---TCGGC-TACATTA-ATTAG---TATGATA--A----------------------TG-AAGGAAA-G-T-AATTTTCCTGC--ACAAAAG--T---AGGT-ATGTCTGGTGGGATTCTGATAGTTTAATT-GTC-ACACTCCAGCTCCCGATTTTAAC--ATG-TG-----CCGGGCTTC-GTGCTACttgttttttttcaaagact
gi|14 : AAACTTT-TTT-TTAAATACAT-G-CCCTTTGGGCAGACATTTCC--A-T-CA-AT--TTTCCCTGCCC--GAACAAAAA------TTAAC-ATGC--C-CG-AAAA----TAA-AA-TA--CAGGA-AAA-----GACAG-----GAGATAG-T--TTTT-AAATCTTATA-------A-----CACTATTG-TGACGTTCttggttttttcaaag
gi|15 : cttcacggGGTGT-TTATTAGCT------CACCTTGA--------CAAT----------TTCC--AAAAGCCAATCTCC-CCTTT------TAGC-ACAGAAA-A-ACCCC--A-G----TAAAA-TCACG-------------------TTT---TGTTGCATAACCATACATA-TATGGCCAT-CTT
gi|16 : CTGAT-GATTGAAAGGAAA-G-C-AATTTTCATGC--GCAAAAT--T---AGAC-ATGTCCGGCGGGCATCTGTTCATGCAATT-TTT-ACATGCCCGCTTCTGATTTTACC--AGA-CC-----ATGGACTTCTGGGTTAttatcagtattgaatacaaa
gi|17 : AGGAAAAG-C-AGTTTTCATGC--ATAAAAT--T--TAGAC-ATGCCCGGCG----TCTGTTCTTGCAATT-TTTCGCATGTCCGTTTCCAATTTTACG--AGGCCC-----CCGGCCATC-AGGCTTCCGtt
gi|18 : AAATTTTATTTATTGAATACAT-G-CCCTTCATGCAGGTATTTCC--A-T-CA-AT--TTCACCTGACC--AAACAAAAA------TTAAC-ATGC--C-Cggtcattt
gi|19 : agtcttcatgC-----------T----------T----TA----ACT--AATAATGAAT----TGAAG-CA---CCACAACTG--------CTAAGT-------CGCACTTG--AA--TTATTC-T------------TA-CGCAAcca
gi|2 : cacaatggatg-TTT-TTGAATACAT-G-TCCTTCGGGCAAGCATTTCC--A-T-CA-AT--TTTCCCTGCCA--GAACAAAAA------TTAACA-TGC--T-CG-AAAA----TAA-AA-TA--CAGAT-AAA-----GACTA-----GAGC-TT-G--TTTTTAAATCTT-----------------------G-TGACGTTCATTA-TTTA-CAAA---TA---------AGT-AT--TGG-TG-------GGG-----------TTTT--------TG-TTTG-TTT---------ACTT-A-----TATA-ACATA-TGA-A-GTTTTAATT---------AG---TCC--CAAA---ATCT---ATGC-T--G-CA-AGTGCACTTTAAA--AT-TT-CAA--TGCC-ATTT-TG-A-TAT-AGTCTGTGT-TTATAAGCT--A---CA-TGTAG--------CA------------TTTC--AAAG-CCA-----A-ACTTT------TA-G-AGGGAAA-A-CCCCC--A-G----CAAAA-TCACGTAACTTAACTTTTGTTGTATTT---TGTTGCATA---ATATATA-T---GCCA--CTTAC-T-TGCTTCAT-A-TC--AAT-C-----GAAGATAGCATCTACAGTAC--TCTAGAC-TAAAAT-TA-T-ATGAACTGGACA----TAAACTTGCAACAAGGGA-AAAAC-----------TGACTTCGTTCT----TT----ACA--GACGATGA-T----TTATG-CA---T-----------------TAAGT-------CGTACTTG--AA-ATTATTC-T------------TA-TTCAAGAGAGTGA---TCGGC-TGTAAGA-ATTGACT--------------------------GAT-GATTGTAAGGAAAAG-C-AATTTTCGTGA--ACAAAAT--TTATAAAC-ATGCCCGGTGGGCTTCTCTTCATGCAATT-TTT-GCATGCCCGTTCCTGATTTTACC--AGG-CCAGGAGTCGGGCATC-GGGCTACCGcgggtgccca
gi|3 : AACTTT-TTT-TTGAACACAT-GCCCCTTCAGGCAGGCATTT-C--A-T-CA-AT--TTTTCCTGCCC--AGACAAAAA------TTAACGATGT--C-CC-GAAA----TAA-AA-TA--CAGAT-GAA-----GACTG-----GAGA-AT-G--TTTT-AAATTTC----------A-----CGC--TTGTTGA-ATTCATTA-TATA-CAAT---AA---------AGTTAT--TGG-TG-------GGA-----------TTTT--------TTGTTTACTTTT--------AC---------ATTA-ACAAATTGA-A-GT----GTT---------AG---TCC--CAAA---ATCT---ATGC-T--G-CA-GATGCAC--TAAA--AT-TTGCAA--TGCCAATTT-TG---TAT-AGTCGGTGT-TTATTAGCT--G---CA-TGTGA--------CAAT----------TTTC--AAAGCC--AAATTA-ACTTT------TA-G-AGAGAAA-A-ACCCC--A-G----TAAAA-TCACG-------------------TTT---TGTTGCATA---ATATATA-T---GCCA--CTTAC-T-AGCTTTGT-A-TC--AAT-C-----AAAGAT-GCG------GTAC--T-----C-TAAAAT-TA-T-ATGAACTGGACA----T------------------AAAAC----------------------T----TT----ACA--GACGATGA-T----TT-TG------TTA-AA-TG--------ATAAGT-------CGTACTTG--AA-ATTATTC-T------------TATTGC-AGAGAATGA---TCGGCTT-TATGA-ATTGACTTTATGATA--A-AC--AGC-ATGT-CGAT-GATTGTAAGGAAAAG-C-AA-TTTCGGGA--ACAAAA---T--TATAC-ATGCCCGGCAGGCTTCTCTTCATGCAATT-TTT-GC-TGCCCG-TTCCAATTTTACC--AGG--C-----CCGG--ATT--GGCTACCGggttacttcga
gi|4 : agtctttcacgaacAAAACTTT-TTT-TGAAACACAT-G-CCCTTCAGGCAGGCATTTC---A-T-CA-AT--TTTTCCTGCCC--AGACAAAAA------TTAACAATGC--C-CG-AAAA----TAA-AA-TA--CAGAT-GAA-----GACTG-----GAGA-AT-G--TTTT-AAATC------------A-----CGT--TTG---ACATTCATTA-TATA-CAAA---TA---------AGT-AT--TGG-TG-------GGA-----------TTTT--------T--TTTG-TTT---------ACTT-A-----ATTA-ACAAA-TGA-A-GT----GTT---------AG---TCC--CAAA---ATCT---ATGCGT--G-CAGAGTGCACTTTAAA--AT-TT-CAA--TGCC-ATTT-TG-A-AATA-GTCGGTGT-TTATTAGCT--G---CA-TGTGA--------CAAT----------TTTT--AAAGCCCAAAATTA-ACTTT------TAGG-AGAGAAA-A-ACCCC--A-G----TAAAA-TCACG-------------------TTT---TGTTGCATA---ATATATA-T---GCCA--CTTAC-T-AG-TTTGT-A-TC--AAT-C-----AAAGAT-GCG------GTAC--T-----C-TAAATT-AA-T-ATGAACTGGACA----T------------------AAAAC-----------T----------G----TT----ACA--GACGATGA-T----TTATG-TG---TTA-AA-TG--------ATAAGT-------CGTACTTG--AA-ATTATTC-T------------TA-TGCAAGAGAATGA---TCGGC-T-TATGA-ATTGACTTTATGATA--A-AAC-AGC-ATGTCCGAT-GATTGTAAGGAAAAG-CAAATTTTCGGGA--ACAAAAT--T--TATAC-ATG-CCGGCAGGCTTCTCTTCATGCAATT-TTT-GCATGCCCG-TTCCAATTTTACC--AGG-CC-----CCGGGCATT-GGGCTACCGggtta
gi|5 : AAACTTA-CTT-TGAACAACAT-T-GCCTTCGGGCAG-CATTTCATGG-T-CACATGCTTTTCCTGCCCCAGACCAAAGAACCAAGTTGACA-TGCAGCGCG-AAAA----TAA-AA-TGACCAGAT-TAATCACTGAGTG-----GAAG-ATAG--TTTT-AAGTCTTCATCATGAGGA-----CGC--TTG-TGACATTCATTAGTATATCAAAACGTAG--------AGTTATTCTGGTTG-------TTA-----------TTTTTG------T--TTTG-TTTT--------CTTT-ACATAGACTAGACAAA-TGAGA-GT----GCTTATGTGGGAAA---TCCTGCAGAAGCATCTTAAATGC-T--GACA-AGTGCACTTTAAACCAT-TT-CAAT-TGCC-ATTT-TG-AGTATAAGTC-GTGTATTA-TAGCTGAG---CA-TGTGACTCGAAGCCAGTTGTTACATCGTTTCCGAAAGCCAAAAATTATACTTTAGAAGGTGGA-AAGGAAATATACCCCCGA-GATTATAAAA-TCTCGCCC----------------CTT---TCTTGCAAA---A---ATA-T---GCCAATCTTACGT-TGCTT
gi|6 : AAAACTTT-TTT-G-AAACACAT---CCCTTCGGGCAGGCATTTTC--A-TTCA-AT--TTTTCC-GCCCA-GAACAAAAA------TTA-CA-TGC--C-CG-AAAAAATTTAATAACTA--CAGATTGAA-----GACTG-----GAGA-AT-G--TTTT-AAATCTT----------ATATAACGC--TTG-TGACATTCATTA-TATA-CAAA---TA---------AG-TAT--TGG-TGTTTTTTAGGGGGCGTTTTTTTTTTT--------T--TTTA-TTTTGTTTGTTAACTTAA-----ATTA-AC-AA-TGA-AGGT----GTT---------AG---TCC--AAAA---ATCT---ATGC-TTGG-CA-AGTGCACTTTAAA--ATATT-CAAATTGCC-ATTTGTGAA-TATAAGTCGGTGT-TTATTAGCT--GGCACA-TGTGA--------CA------------TTTC--AAAAAACCAAATTA-ACCTT------TAGACAGGAAAA-A-ACCCC--A-G----TAAAATTCACG-------------------TTT---TGTTGCATA---AAAAATATT---GCCA--CTTAC-TAAGCTTTGT-ATTC--AATACTGATAAAAGAT-Gttagtcatatc
gi|7 : tcttcacgga-TAAAAT-GAAC-ATGAA---GACAACTGC------------------AAAACATCTACAATTTT----------T----CT----ACA--G-TGATGA-T----TTATG-GA---TTATAA-TG--------ATAAGTA------CGTACT-G--AA-----TCC-T------------TA-TGCAAGAGA-TGA---TCGGC-TGTATGA-ATTGACTTTATCTTA--A-ACCAAGC-ATGTCCGATTGATTGTAGAAAAAAGGC-A--TTTCAGGA--ACAAAAAAAT--TACAC-ATGCCCGGCGGGGTTCTCTTCATGCCATT-TTT-GCATGCCCGTTCCCAATTTTACCCAGGG-CC-----CCGGGTATC-GTGCTACCG
gi|8 : atcaaagaagaaagtcttataaaaacgtaactatacaGCTTCATGA-TC--A---C-----ATACA--GCAT-----CTAC--T-----C-TAAAAC-TA-T-CTGAGCAGGACA----C-------------------AAAC-----------T----------T----ggtatttcgaaggga
gi|8 : tatcccctatat----TT----ACA----CAATGG-TGAGGTTATG-CT---TTA-AA-TG--------TTAAGTTGTACAGTGTACTTG--AA-AGTATTCATGAATGGAAGAGGTG-CCCATGAGAATGACAGTCTGT-T-TA--A-ATTGTTTTTATTATA--A-A---AACTATGTCC-AT-GATTGAAAGG-AAAG-C-AATTCTCTTGC--ATGAAA---T--TAAAC-ATGCCCGACgcaactggggatcgactatttcttacaaccccgctaaacaaagcattgttgccaatgttgcttacacaatggtgaggttatgctttaaatgttaagttgtacagtgtacttgaaagtattcatgaatggaagaggtgcccatgagaatgacagtctgtttaaattgtttttattataaaaactatgtccatgattgaaaggaaagcaattctcttgcatgaaattaaacatgcccgact
gi|9 : tatcccctatatgcttcatgatcacatacagcatctactctaaaactatctgagcaggacacaaacttgcaactggggatcgactatttcttacaaccccgctaaacaaagcattgttgccaatgttgc-------------------TTT---TGTTGCTTA---ATATTTA-T---GCCA--CTTGC-T-AGCTTCGA-T-TCGTGAT-C-----AAAGATAGCAT-----CTACT-T-----T-TAAAAT-TA-T-ATGAGATGGACA----C-------------------AAAC-----------T----------TGCAACTGGGGACA--GAC--T---T----TTATACCACTTTTA-AA-AA--------ATAA-T-------CATAGTTGGCAACATTGT---T------------TA-C---AGATGGTGA---T-----T-TATGC-ATTt
gi|9 : agaagcgtatagtttaactttgtaAAAAT-AA-TCAT-AGTTGG-------C------------------AACAT-----------TG---------T----TT----ACA--GATGGTGA-T----TTATG-CA---TTT-AA-AG--------TTAAGT-------TGTACTTG--AA-ATT---------------------------AGAATGA---TCAGCAG-CATGT-ACTGACTTTATCAT-----A---AAC-ATGTCtaaagttaagttgtacttgaaattagaatgatcagcagcatgtactgactttatcataaacatgtca
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|20 ): TTGGACCAAACGTTCTTGTAAACACCAATACCGT
Alignments
lowQualScore : 11 111111 11 1111 11111 11111 666666666666666666666 1 111 333333333 555555555555555555555555555555555555 33333333333333333333 1111 222222222 111 111 111 11 111 11 222222 4444444444444444444444 1111 111111 111 1111 4444444444444444444 11 1 44444444444 9999999999999999999999999999999999999999999999999999999999999 111111111 1111111 222222222222 111 222222222 2222222
lowQualScore : 5 555 1 999 0 66 5 5 5 66 1 11 444444 44 66 5 5 2222 5 5 77 66 44444 44444 5 9999 5 111111111111111111111 5 3 6 111 333333333 9 99 6 222222222222222222222222222222222222 6 11111111111111111111 6 6 6 6 4444 666666666 111 99 111 111 6 99 6 6 99 6 6 55 6 6 222 44 0 5 333333 5 2222222222222222222222 77 4 2222 1 5 666666 555 5 5 8888 2222 5 7777777777777777777 888 888 0 5 888 11 555 1 77 7 999 00000000000 5 55 5 5 4 5555555555555555555555555555555555555555555555555555555555555 66 55 9999 999999 8 4 666666666 7777777 55 4 4 000000000000 777 0 666 11 666 3 0 3 2 555555555 3 11 3 4 1 5 3 3 2 1 44 2222222 2 3 0 1 3 3 3 4 55 3 99999 3
lowQualScore : . ... . ... . .. . . . .. . .. ...... .. .. . . .... . . .. .. ..... ..... . .... . ..................... . . . ... ......... . .. . .................................... . .................... . . . . .... ......... ... .. ... ... . .. . . .. . . .. . . ... .. . . ...... . ...................... .. . .... . . ...... ... . . .... .... . ................... ... ... . . ... .. ... . .. . ... ........... . .. . . . ............................................................. .. .. .... ...... . . ......... ....... .. . . ............ ... . ... .. ... . . . . ......... . .. . . . . . . . . .. ....... . . . . . . . . .. . ..... .
lowQualScore : 0 111 1 444 2 99 0 0 0 99 1 99 444444 55 99 0 7 1111 7 7 99 11 33333 33333 7 4444 7 999999999999999999999 7 3 7 777 333333333 8 22 7 222222222222222222222222222222222222 7 77777777777777777777 7 7 7 7 2222 777777777 777 22 777 777 7 22 7 7 22 7 7 88 7 7 555 77 7 7 000000 7 1111111111111111111111 99 3 1111 4 7 444444 333 7 7 0000 1111 7 5555555555555555555 888 888 4 0 888 99 999 4 99 3 000 22222222222 7 55 0 0 5 1111111111111111111111111111111111111111111111111111111111111 11 22 4444 111111 0 0 999999999 0000000 55 0 0 555555555555 000 7 444 99 444 3 5 5 3 666666666 6 66 6 5 2 4 3 3 4 0 66 9999999 3 3 2 4 6 6 6 9 00 6 11111 6
consensus : AAAACTTT-TTT-TTAAACACAT-G-CCCTTCGGGCAGGCATTTCC--A-T-CA-AT--TTTCCCTGCCC--GAACAAAAA------TTAACAATGC--C-CG-AAAA----TAA-AA-TA--CAGAT-GAA-----GACTG-----GAGA-AT-G--TTTT-AAATCTT----------A-----CGC--TTG-TGACGTTCATTA-TATA-CAAA---TA---------AGTTAT--TGG-TG-------GGG-----------TTTT--------T--TTTG-TTTT--------ACTT-A-----ATTA-ACAAA-TGA-A-GT----GTT---------AG---TCC--CAAA---ATCT---ATGC-T--G-CA-AGTGCACTTTAAA--AT-TT-CAA--TGCC-ATTT-TG-A-TATAAGTCGGTGT-TTATTAGCT--G---CA-TGTGA--------CAAT----------TTTC--AAAGCCCAAAATTA-ACTTT------TAGG-AGGGAAA-A-ACCCC--A-G----TAAAA-TCACG-------------------TTT---TGTTGCATA---ATATATA-T---GCCA--CTTAC-T-AGCTTCGTA-TC--AATCAAAGATAGCGTCTAC--T--------C-TAAAAT-TA-T-ATGAACTGGACA----C------------------AAAAC-----------T----------T----TT----ACA--GACGATGA-T----TTATG-CA---TTA-AA-TG--------NTAAGT-------CGTACTTG--AA-ATTATTC-T------------TA-CGCAAGAGAATGA---TCGGC-T-TATGA-ATTGACTTTATNATA--A-A---AAC-ATGTCCGAT-GATTGNAAGGAAAAG-C-AATTTTCNTGC--ACAAAAT--T--TAGAC-ATGCCCGGCGGGCTTCTGTTCATGCAATT-TTT-GCATGCCCGCTCCCGATTTTACC--AGG-CC-----CCGGGCATC-GGGCTACCG
Reference ( family-7901 ) : AAAACTTT-TTT-TTAAACACAT-G-CCCTTCGGGCAGGCATTTCC--A-T-CA-AT--TTTCCCTGCCC--GAACAAAAA------TTAACAATGC--C-CG-AAAA----TAA-AA-TA--CAGAT-GAA-----GACTG-----GAGA-AT-G--TTTT-AAATCTT----------A-----CGC--TTG-TGACGTTCATTA-TATA-CAAA---TA---------AGTTAT--TGG-TG-------GGG-----------TTTT--------T--TTTG-TTTT--------ACTT-A-----ATTA-ACAAA-TGA-A-GT----GTT---------AG---TCC--CAAA---ATCT---ATGC-T--G-CA-AGTGCACTTTAAA--AT-TT-CAA--TGCC-ATTT-TG-A-TATAAGTCGGTGT-TTATTAGCT--G---CA-TGTGA--------CAAT----------TTTC--AAAGCCCAAAATTA-ACTTT------TAGG-AGGGAAA-A-ACCCC--A-G----TAAAA-TCACG-------------------TTT---TGTTGCATA---ATATATA-T---GCCA--CTTAC-T-AGCTTCGTA-TC--AATCAAAGATAGCGTNTAC--T--------C-TAAAAT-TA-T-ATGAACTGGACA----C------------------AAAAC-----------T----------T----TT----ACA--GACGATGA-T----TTATG-CA---TTA-AA-TG--------NTAAGT-------CGTACTTG--AA-ATTATTC-T------------TA-CGCAAGAGAATGA---TCGGC-T-TATGA-ATTGACTTTATNATA--A-A---AAC-ATGTCCGAT-GATTGNAAGGAAAAG-C-AATTTTCNTGC--ACAAAAT--T--TAGAC-ATGCCCGGCGGGCTTCTGTTCATGCAATT-TTT-GCATGCCCGCTCCCGATTTTACC--AGG-CC-----CCGGGCATC-GGGCTACCG
gi|1 : AACTTT-TTT-GTAAATACATTG-CCCTTTGGGCAGA-ATTTCC--AGT-CA-AT--TTTCCCT-CCC--GAACAAAAA------TTAA-AATGC--C-CGGAAAA----TAA-A--TA--CAGGA-AAA-----GACTGTCACAGAGA-TT-AGTTTTT-AAATCTT----------ATAATACTA--TTG-TGACGTTCATCAGTATA-CAAA---TACCGTATTGTGGTCTT--TGT-TG-------TTG-----------TTTTGTCTAATAT--TTTT-TTAT--------ACTT-A-----ATTA-ACAAA-TGA-A-GT----TCT---------AGACGTCC--TAAA---ATCT---ATGC-T--G-CA-AGTGCATTTAAAA--GT-TC-CAA--TGCC-ATTT-T--A-TATA-GTCGGTGT-TTATAAGCTT-G---CA-TGTGG--------CA------------TTTC--AAAGCC----A--A-ACGTT------TAG--AGGGAAA-A-CCCCC--CTG----CAAAA-TCACA-------------------TTTAACT-TTGTAT-----TTTATA-T---GCCA--CTTAC-G-AACTTCGTATTC--AATCAAAGATAGCATCTACGAT--------CGCAAAATGTA-T-ATGAAACGGACA----CAAACATGCAACTAGGGAAAAAAC-----------T----------C----TG----ACATCGACGGTA-------TTATG-CA---TTA-AT-TGCCATAAAAATAAGT-------CTTACTTG--AA-AGTAGTC-T------------TG-CGCAAGAGAATGA---T--GC-T-TATGA-ATT-ACTTTTTGAT-----A---AAC-ATGTCCG-T-GA-TGTAA-GAAATG-C-AA-TTTCGTGCGAACAAA----T--TAAACGATGCCCGGCAGGATTCC-TTCATGCAATCGTTT-GCATGCCCCTTCCCGA--TTACC--AGG-CC-----CCGGGCATC-GGGCTACCG
gi|10 : gtcttcactggA---TCA-AG-TG--------CTAAGT-------TGCACTTG--AA-ATTATTC-T------------TA-CACAAGAG-GT--------GC-C-CATGAGAATGA-TCTGCTATA--ATA---AAC-ATGTCTGAG-GATTGAAAGG-AAAG-C-AATTTTCTTGC--ACAAAA-------------------------TTCTGTTCATGCAATT-TTT-ACATGCCCACTTCTGATTTTACC--AGG-CC-----CCGGGCATC-GGGCTACggttatttcggaagac
gi|11 : acgcattgttgatgcttttactaaaacatctgtacaactgtgattaagcatcaagtgctaagttGA-ATTGACTGTATAATATTA-A---AAC-ATGTCTGAT-GATTGAAAGGAAA-G-C-AATTTTGTTGT--GCAAAAT--T---AGAC-ATGCCCGGTGGGCTTCTGCTCATGCAATT-TTT-ACATGCCTGCTCTCAATTTTATC--AGG-CC-----CCGGGCATC-AGGCTACCggggttattttgaag
gi|12 : ttagtaatacaaatatgttcttaaaATAA---TCGGC-TGTATGA--TTGGCTATATTA-A--T-T---AAC-TTG----AT-AAT--GAAG--AAAG-C-AACTTTCCTGC--ACAAAAG--T---AGGT-ATGTCTGGCGTGCTTCTGGTTGTTTAATT-GTT-ATACTCCAGCTCCCGA-TTTAAC--GTG-TG-----CCGGGCTTC-GTGCTACagattattttaaa
gi|13 : ATGA---TCGGC-TACATTA-ATTAG---TATGATA--A----------------------TG-AAGGAAA-G-T-AATTTTCCTGC--ACAAAAG--T---AGGT-ATGTCTGGTGGGATTCTGATAGTTTAATT-GTC-ACACTCCAGCTCCCGATTTTAAC--ATG-TG-----CCGGGCTTC-GTGCTACttgttttttttcaaagact
gi|14 : AAACTTT-TTT-TTAAATACAT-G-CCCTTTGGGCAGACATTTCC--A-T-CA-AT--TTTCCCTGCCC--GAACAAAAA------TTAAC-ATGC--C-CG-AAAA----TAA-AA-TA--CAGGA-AAA-----GACAG-----GAGATAG-T--TTTT-AAATCTTATA-------A-----CACTATTG-TGACGTTCttggttttttcaaag
gi|15 : cttcacggGGTGT-TTATTAGCT------CACCTTGA--------CAAT----------TTCC--AAAAGCCAATCTCC-CCTTT------TAGC-ACAGAAA-A-ACCCC--A-G----TAAAA-TCACG-------------------TTT---TGTTGCATAACCATACATA-TATGGCCAT-CTT
gi|16 : CTGAT-GATTGAAAGGAAA-G-C-AATTTTCATGC--GCAAAAT--T---AGAC-ATGTCCGGCGGGCATCTGTTCATGCAATT-TTT-ACATGCCCGCTTCTGATTTTACC--AGA-CC-----ATGGACTTCTGGGTTAttatcagtattgaatacaaa
gi|17 : AGGAAAAG-C-AGTTTTCATGC--ATAAAAT--T--TAGAC-ATGCCCGGCG----TCTGTTCTTGCAATT-TTTCGCATGTCCGTTTCCAATTTTACG--AGGCCC-----CCGGCCATC-AGGCTTCCGtt
gi|18 : AAATTTTATTTATTGAATACAT-G-CCCTTCATGCAGGTATTTCC--A-T-CA-AT--TTCACCTGACC--AAACAAAAA------TTAAC-ATGC--C-Cggtcattt
gi|19 : agtcttcatgC-----------T----------T----TA----ACT--AATAATGAAT----TGAAG-CA---CCACAACTG--------CTAAGT-------CGCACTTG---A-ATTATTC-T------------TA-CGCAAcca
gi|2 : cacaatggatg-TTT-TTGAATACAT-G-TCCTTCGGGCAAGCATTTCC--A-T-CA-AT--TTTCCCTGCCA--GAACAAAAA------TTAACA-TGC--T-CG-AAAA----TAA-AA-TA--CAGAT-AAA-----GACTA-----GAGC-TT-G--TTTTTAAATCTT-----------------------G-TGACGTTCATTA-TTTA-CAAA---TA---------AGT-AT--TGG-TG-------GGG-----------TTTT--------TG-TTTG-TTT---------ACTT-A-----TATA-ACATA-TGA-A-GTTTTAATT---------AG---TCC--CAAA---ATCT---ATGC-T--G-CA-AGTGCACTTTAAA--AT-TT-CAA--TGCC-ATTT-TG-A-TAT-AGTCTGTGT-TTATAAGCT--A---CA-TGTAG--------CA------------TTTC--AAAG-CCA-----A-ACTTT------TA-G-AGGGAAA-A-CCCCC--A-G----CAAAA-TCACGTAACTTAACTTTTGTTGTATTT---TGTTGCATA---ATATATA-T---GCCA--CTTAC-T-TGCTTCATA-TC--AATCGAAGATAGCATCTACAGTACTCTAGAC-TAAAAT-TA-T-ATGAACTGGACA----TAAACTTGCAACAAGGGA-AAAAC-----------TGACTTCGTTCT----TT----ACA--GACGATGA-T----TTATG-CA---T-----------------TAAGT-------CGTACTTG--AA-ATTATTC-T------------TA-TTCAAGAGAGTGA---TCGGC-TGTAAGA-ATTGACT--------------------------GAT-GATTGTAAGGAAAAG-C-AATTTTCGTGA--ACAAAAT--TTATAAAC-ATGCCCGGTGGGCTTCTCTTCATGCAATT-TTT-GCATGCCCGTTCCTGATTTTACC--AGG-CCAGGAGTCGGGCATC-GGGCTACCGcgggtgccca
gi|3 : AACTTT-TTT-TTGAACACAT-GCCCCTTCAGGCAGGCATTT-C--A-T-CA-AT--TTTTCCTGCCC--AGACAAAAA------TTAACGATGT--C-CC-GAAA----TAA-AA-TA--CAGAT-GAA-----GACTG-----GAGA-AT-G--TTTT-AAATTTC----------A-----CGC--TTGTTGA-ATTCATTA-TATA-CAAT---AA---------AGTTAT--TGG-TG-------GGA-----------TTTT--------TTGTTTACTTTT--------AC---------ATTA-ACAAATTGA-A-GT----GTT---------AG---TCC--CAAA---ATCT---ATGC-T--G-CA-GATGCAC--TAAA--AT-TTGCAA--TGCCAATTT-TG---TAT-AGTCGGTGT-TTATTAGCT--G---CA-TGTGA--------CAAT----------TTTC--AAAGCC--AAATTA-ACTTT------TA-G-AGAGAAA-A-ACCCC--A-G----TAAAA-TCACG-------------------TTT---TGTTGCATA---ATATATA-T---GCCA--CTTAC-T-AGCTTTGTA-TC--AATCAAAGAT-GCG-GTAC--T--------C-TAAAAT-TA-T-ATGAACTGGACA----T------------------AAAAC----------------------T----TT----ACA--GACGATGA-T----TT-TG------TTA-AA-TG--------ATAAGT-------CGTACTTG--AA-ATTATTC-T------------TATTGC-AGAGAATGA---TCGGCTT-TATGA-ATTGACTTTATGATA--A-AC--AGC-ATGT-CGAT-GATTGTAAGGAAAAG-C-AA-TTTCGGGA--ACAAAA---T--TATAC-ATGCCCGGCAGGCTTCTCTTCATGCAATT-TTT-GC-TGCCCG-TTCCAATTTTACC--AGG--C-----CCGG--ATT--GGCTACCGggttacttcga
gi|4 : agtctttcacgaacAAAACTTT-TTT-TGAAACACAT-G-CCCTTCAGGCAGGCATTTC---A-T-CA-AT--TTTTCCTGCCC--AGACAAAAA------TTAACAATGC--C-CG-AAAA----TAA-AA-TA--CAGAT-GAA-----GACTG-----GAGA-AT-G--TTTT-AAATC------------A-----CGT--TTG---ACATTCATTA-TATA-CAAA---TA---------AGT-AT--TGG-TG-------GGA-----------TTTT--------T--TTTG-TTT---------ACTT-A-----ATTA-ACAAA-TGA-A-GT----GTT---------AG---TCC--CAAA---ATCT---ATGCGT--G-CAGAGTGCACTTTAAA--AT-TT-CAA--TGCC-ATTT-TG-A-AATA-GTCGGTGT-TTATTAGCT--G---CA-TGTGA--------CAAT----------TTTT--AAAGCCCAAAATTA-ACTTT------TAGG-AGAGAAA-A-ACCCC--A-G----TAAAA-TCACG-------------------TTT---TGTTGCATA---ATATATA-T---GCCA--CTTAC-T-AG-TTTGTA-TC--AATCAAAGAT-GCG-GTAC--T--------C-TAAATT-AA-T-ATGAACTGGACA----T------------------AAAAC-----------T----------G----TT----ACA--GACGATGA-T----TTATG-TG---TTA-AA-TG--------ATAAGT-------CGTACTTG--AA-ATTATTC-T------------TA-TGCAAGAGAATGA---TCGGC-T-TATGA-ATTGACTTTATGATA--A-AAC-AGC-ATGTCCGAT-GATTGTAAGGAAAAG-CAAATTTTCGGGA--ACAAAAT--T--TATAC-ATG-CCGGCAGGCTTCTCTTCATGCAATT-TTT-GCATGCCCG-TTCCAATTTTACC--AGG-CC-----CCGGGCATT-GGGCTACCGggtta
gi|5 : AAACTTA-CTT-TGAACAACAT-T-GCCTTCGGGCAG-CATTTCATGG-T-CACATGCTTTTCCTGCCCCAGACCAAAGAACCAAGTTGACA-TGCAGCGCG-AAAA----TAA-AA-TGACCAGAT-TAATCACTGAGTG-----GAAG-ATAG--TTTT-AAGTCTTCATCATGAGGA-----CGC--TTG-TGACATTCATTAGTATATCAAAACGTAG--------AGTTATTCTGGTTG-------TTA-----------TTTTTG------T--TTTG-TTTT--------CTTT-ACATAGACTAGACAAA-TGAGA-GT----GCTTATGTGGGAAA---TCCTGCAGAAGCATCTTAAATGC-T--GACA-AGTGCACTTTAAACCAT-TT-CAAT-TGCC-ATTT-TG-AGTATAAGTC-GTGTATTA-TAGCTGAG---CA-TGTGACTCGAAGCCAGTTGTTACATCGTTTCCGAAAGCCAAAAATTATACTTTAGAAGGTGGA-AAGGAAATATACCCCCGA-GATTATAAAA-TCTCGCCC----------------CTT---TCTTGCAAA---A---ATA-T---GCCAATCTTACGT-TGCTT
gi|6 : AAAACTTT-TTT-G-AAACACAT---CCCTTCGGGCAGGCATTTTC--A-TTCA-AT--TTTTCC-GCCCA-GAACAAAAA------TTA-CA-TGC--C-CG-AAAAAATTTAATAACTA--CAGATTGAA-----GACTG-----GAGA-AT-G--TTTT-AAATCTT----------ATATAACGC--TTG-TGACATTCATTA-TATA-CAAA---TA---------AG-TAT--TGG-TGTTTTTTAGGGGGCGTTTTTTTTTTT--------T--TTTA-TTTTGTTTGTTAACTTAA-----ATTA-AC-AA-TGA-AGGT----GTT---------AG---TCC--AAAA---ATCT---ATGC-TTGG-CA-AGTGCACTTTAAA--ATATT-CAAATTGCC-ATTTGTGAA-TATAAGTCGGTGT-TTATTAGCT--GGCACA-TGTGA--------CA------------TTTC--AAAAAACCAAATTA-ACCTT------TAGACAGGAAAA-A-ACCCC--A-G----TAAAATTCACG-------------------TTT---TGTTGCATA---AAAAATATT---GCCA--CTTAC-TAAGCTTTGTATTC--AATttagtcatatc
gi|7 : tcttcacgga-TAAAAT-GAAC-ATGAA---GACAACTGC------------------AAAACATCTACAATTTT----------T----CT----ACA--G-TGATGA-T----TTATG-GA---TTATAA-TG--------ATAAGTA------CGTACT-G--AA-----TCC-T------------TA-TGCAAGAGA-TGA---TCGGC-TGTATGA-ATTGACTTTATCTTA--A-ACCAAGC-ATGTCCGATTGATTGTAGAAAAAAGGC-A--TTTCAGGA--ACAAAAAAAT--TACAC-ATGCCCGGCGGGGTTCTCTTCATGCCATT-TTT-GCATGCCCGTTCCCAATTTTACCCAGGG-CC-----CCGGGTATC-GTGCTACCGactgataaaagatg
gi|8 : atcaaagaagaaagtcttataaaaacgtaactatacaGCTTCATG------ATCACATACAGCATCTAC--T--------C-TAAAAC-TA-T-CTGAGCAGGACA----C-------------------AAAC-----------T----------T----ggtatttcgaaggga
gi|8 : tatcccctatat----TT----ACA----CAATGG-TGAGGTTATG-CT---TTA-AA-TG--------TTAAGTTGTACAGTGTACTTG--AA-AGTATTCATGAATGGAAGAGGTG-CCCATGAGAATGACAGTCTGT-T-TA--A-ATTGTTTTTATTATA--A-A---AACTATGTCC-AT-GATTGAAAGG-AAAG-C-AATTCTCTTGC--ATGAAA---T--TAAAC-ATGCCCGACgcaactggggatcgactatttcttacaaccccgctaaacaaagcattgttgccaatgttgcttacacaatggtgaggttatgctttaaatgttaagttgtacagtgtacttgaaagtattcatgaatggaagaggtgcccatgagaatgacagtctgtttaaattgtttttattataaaaactatgtccatgattgaaaggaaagcaattctcttgcatgaaattaaacatgcccgact
gi|9 : tatcccctatatgcttcatgatcacatacagcatctactctaaaactatctgagcaggacacaaacttgcaactggggatcgactatttcttacaaccccgctaaacaaagcattgttgccaatgttgc-------------------TTT---TGTTGCTTA---ATATTTA-T---GCCA--CTTGC-T-AGCTTCGAT-TCGTGATCAAAGATAGCATCTACT-T--------T-TAAAAT-TA-T-ATGAGATGGACA----C-------------------AAAC-----------T----------TGCAACTGGGGACA--GAC--T---T----TTATACCACTTTTA-AA-AA--------ATAA-T-------CATAGTTGGCAACATTGT---T------------TA-C---AGATGGTGA---T-----T-TATGC-ATTt
gi|9 : agaagcgtatagtttaactttgtaAAAAT-AA-TCAT-AGTTGG-------C------------------AACAT-----------TG---------T----TT----ACA--GATGGTGA-T----TTATG-CA---TTT-AA-AG--------TTAAGT-------TGTACTTG--AA-ATT---------------------------AGAATGA---TCAGCAG-CATGT-ACTGACTTTATCAT-----A---AAC-ATGTCtaaagttaagttgtacttgaaattagaatgatcagcagcatgtactgactttatcataaacatgtca
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|20 ): TTGGACCAAACGTTCTTGTAAACACCAATACCGT
Alignments
lowQualScore : 11 111111 11 1111 11111 11111 666666666666666666666 1 111 333333333 555555555555555555555555555555555555 33333333333333333333 1111 222222222 111 111 111 11 111 11 222222 4444444444444444444444 1111 111111 111 1111 4444444444444444444 11 1 44444444444 9999999999999999999999999999999999999999999999999999999999999 111111111 1111111 222222222222 111 222222222 2222222
lowQualScore : 5 555 1 999 0 66 5 5 5 66 1 11 444444 44 66 5 5 2222 5 5 77 66 44444 44444 5 9999 5 111111111111111111111 5 3 6 111 333333333 9 99 6 222222222222222222222222222222222222 6 11111111111111111111 6 6 6 6 4444 666666666 111 99 111 111 6 99 6 6 99 6 6 55 6 6 222 44 0 5 333333 5 2222222222222222222222 77 4 2222 1 5 666666 555 5 5 8888 2222 5 7777777777777777777 888 888 0 5 888 11 555 1 77 7 88 00000000000 5 55 5 5 4 5555555555555555555555555555555555555555555555555555555555555 66 55 9999 999999 8 4 666666666 7777777 55 44 4 000000000000 777 0 666 11 666 3 0 3 2 555555555 3 11 3 4 1 5 3 3 2 1 44 2222222 2 3 0 1 3 3 3 4 55 3 99999 3
lowQualScore : . ... . ... . .. . . . .. . .. ...... .. .. . . .... . . .. .. ..... ..... . .... . ..................... . . . ... ......... . .. . .................................... . .................... . . . . .... ......... ... .. ... ... . .. . . .. . . .. . . ... .. . . ...... . ...................... .. . .... . . ...... ... . . .... .... . ................... ... ... . . ... .. ... . .. . .. ........... . .. . . . ............................................................. .. .. .... ...... . . ......... ....... .. .. . ............ ... . ... .. ... . . . . ......... . .. . . . . . . . . .. ....... . . . . . . . . .. . ..... .
lowQualScore : 0 111 1 444 2 99 0 0 0 99 1 99 444444 55 99 0 7 1111 7 7 99 11 33333 33333 7 4444 7 999999999999999999999 7 3 7 777 333333333 8 22 7 222222222222222222222222222222222222 7 77777777777777777777 7 7 7 7 2222 777777777 777 22 777 777 7 22 7 7 22 7 7 88 7 7 555 77 7 7 000000 7 1111111111111111111111 99 3 1111 4 7 444444 333 7 7 0000 1111 7 5555555555555555555 888 888 4 0 888 99 999 4 99 3 00 22222222222 7 55 0 0 5 1111111111111111111111111111111111111111111111111111111111111 11 22 4444 111111 0 0 999999999 0000000 55 88 0 555555555555 000 7 444 99 444 3 5 5 3 666666666 6 66 6 5 2 4 3 3 4 0 66 9999999 3 3 2 4 6 6 6 9 00 6 11111 6
consensus : AAAACTTT-TTT-TTAAACACAT-G-CCCTTCGGGCAGGCATTTCC--A-T-CA-AT--TTTCCCTGCCC--GAACAAAAA------TTAACAATGC--C-CG-AAAA----TAA-AA-TA--CAGAT-GAA-----GACTG-----GAGA-AT-G--TTTT-AAATCTT----------A-----CGC--TTG-TGACGTTCATTA-TATA-CAAA---TA---------AGTTAT--TGG-TG-------GGG-----------TTTT--------T--TTTG-TTTT--------ACTT-A-----ATTA-ACAAA-TGA-A-GT----GTT---------AG---TCC--CAAA---ATCT---ATGC-T--G-CA-AGTGCACTTTAAA--AT-TT-CAA--TGCC-ATTT-TG-A-TATAAGTCGGTGT-TTATTAGCT--G---CA-TGTGA--------CAAT----------TTTC--AAAGCCCAAAATTA-ACTTT------TAGG-AGGGAAA-A-ACCCC--A-G----TAAAA-TCACG-------------------TTT---TGTTGCATA---ATATATA-T---GCCA--CTTAC-T-AGCTTCGTA-TC--AATCAAAGATAGCGTCTAC--T--------C-TAAAAT-TA-T-ATGAACTGGACA----C------------------AAAAC-----------T----------T----TT----ACA--GACGATGA-T----TTATG-CA---TTA-AA-TG--------NTAAGT-------CGTACTTG--AA-ATTATTC-T------------TA-CGCAAGAGAATGA---TCGGC-T-TATGA-ATTGACTTTATNATA--A-A---AAC-ATGTCCGAT-GATTGNAAGGAAAAG-C-AATTTTCNTGC--ACAAAAT--T--TAGAC-ATGCCCGGCGGGCTTCTGTTCATGCAATT-TTT-GCATGCCCGCTCCCGATTTTACC--AGG-CC-----CCGGGCATC-GGGCTACCG
Reference ( family-7901 ) : AAAACTTT-TTT-TTAAACACAT-G-CCCTTCGGGCAGGCATTTCC--A-T-CA-AT--TTTCCCTGCCC--GAACAAAAA------TTAACAATGC--C-CG-AAAA----TAA-AA-TA--CAGAT-GAA-----GACTG-----GAGA-AT-G--TTTT-AAATCTT----------A-----CGC--TTG-TGACGTTCATTA-TATA-CAAA---TA---------AGTTAT--TGG-TG-------GGG-----------TTTT--------T--TTTG-TTTT--------ACTT-A-----ATTA-ACAAA-TGA-A-GT----GTT---------AG---TCC--CAAA---ATCT---ATGC-T--G-CA-AGTGCACTTTAAA--AT-TT-CAA--TGCC-ATTT-TG-A-TATAAGTCGGTGT-TTATTAGCT--G---CA-TGTGA--------CAAT----------TTTC--AAAGCCCAAAATTA-ACTTT------TAGG-AGGGAAA-A-ACCCC--A-G----TAAAA-TCACG-------------------TTT---TGTTGCATA---ATATATA-T---GCCA--CTTAC-T-AGCTTCGTA-TC--AATCAAAGATAGCGTCTAC--T--------C-TAAAAT-TA-T-ATGAACTGGACA----C------------------AAAAC-----------T----------T----TT----ACA--GACGATGA-T----TTATG-CA---TTA-AA-TG--------NTAAGT-------CGTACTTG--AA-ATTATTC-T------------TA-CGCAAGAGAATGA---TCGGC-T-TATGA-ATTGACTTTATNATA--A-A---AAC-ATGTCCGAT-GATTGNAAGGAAAAG-C-AATTTTCNTGC--ACAAAAT--T--TAGAC-ATGCCCGGCGGGCTTCTGTTCATGCAATT-TTT-GCATGCCCGCTCCCGATTTTACC--AGG-CC-----CCGGGCATC-GGGCTACCG
gi|1 : AACTTT-TTT-GTAAATACATTG-CCCTTTGGGCAGA-ATTTCC--AGT-CA-AT--TTTCCCT-CCC--GAACAAAAA------TTAA-AATGC--C-CGGAAAA----TAA-A--TA--CAGGA-AAA-----GACTGTCACAGAGA-TT-AGTTTTT-AAATCTT----------ATAATACTA--TTG-TGACGTTCATCAGTATA-CAAA---TACCGTATTGTGGTCTT--TGT-TG-------TTG-----------TTTTGTCTAATAT--TTTT-TTAT--------ACTT-A-----ATTA-ACAAA-TGA-A-GT----TCT---------AGACGTCC--TAAA---ATCT---ATGC-T--G-CA-AGTGCATTTAAAA--GT-TC-CAA--TGCC-ATTT-T--A-TATA-GTCGGTGT-TTATAAGCTT-G---CA-TGTGG--------CA------------TTTC--AAAGCC----A--A-ACGTT------TAG--AGGGAAA-A-CCCCC--CTG----CAAAA-TCACA-------------------TTTAACT-TTGTAT-----TTTATA-T---GCCA--CTTAC-G-AACTTCGTATTC--AATCAAAGATAGCATCTACGAT--------CGCAAAATGTA-T-ATGAAACGGACA----CAAACATGCAACTAGGGAAAAAAC-----------T----------C----TG----ACATCGACGGTA-------TTATG-CA---TTA-AT-TGCCATAAAAATAAGT-------CTTACTTG--AA-AGTAGTC-T------------TG-CGCAAGAGAATGA---T--GC-T-TATGA-ATT-ACTTTTTGAT-----A---AAC-ATGTCCG-T-GA-TGTAA-GAAATG-C-AA-TTTCGTGCGAACAAA----T--TAAACGATGCCCGGCAGGATTCC-TTCATGCAATCGTTT-GCATGCCCCTTCCCGA--TTACC--AGG-CC-----CCGGGCATC-GGGCTACCG
gi|10 : gtcttcactggA---TCA-AG-TG--------CTAAGT-------TGCACTTG--AA-ATTATTC-T------------TA-CACAAGAG-GT--------GC-C-CATGAGAATGA-TCTGCTATA--ATA---AAC-ATGTCTGAG-GATTGAAAGG-AAAG-C-AATTTTCTTGC--ACAAAA-------------------------TTCTGTTCATGCAATT-TTT-ACATGCCCACTTCTGATTTTACC--AGG-CC-----CCGGGCATC-GGGCTACggttatttcggaagac
gi|11 : acgcattgttgatgcttttactaaaacatctgtacaactgtgattaagcatcaagtgctaagttGA-ATTGACTGTATAATATTA-A---AAC-ATGTCTGAT-GATTGAAAGGAAA-G-C-AATTTTGTTGT--GCAAAAT--T---AGAC-ATGCCCGGTGGGCTTCTGCTCATGCAATT-TTT-ACATGCCTGCTCTCAATTTTATC--AGG-CC-----CCGGGCATC-AGGCTACCggggttattttgaag
gi|12 : ttagtaatacaaatatgttcttaaaATAA---TCGGC-TGTATGA--TTGGCTATATTA-A--T-T---AAC-TTG----AT-AAT--GAAG--AAAG-C-AACTTTCCTGC--ACAAAAG--T---AGGT-ATGTCTGGCGTGCTTCTGGTTGTTTAATT-GTT-ATACTCCAGCTCCCGA-TTTAAC--GTG-TG-----CCGGGCTTC-GTGCTACagattattttaaa
gi|13 : ATGA---TCGGC-TACATTA-ATTAG---TATGATA--A----------------------TG-AAGGAAA-G-T-AATTTTCCTGC--ACAAAAG--T---AGGT-ATGTCTGGTGGGATTCTGATAGTTTAATT-GTC-ACACTCCAGCTCCCGATTTTAAC--ATG-TG-----CCGGGCTTC-GTGCTACttgttttttttcaaagact
gi|14 : AAACTTT-TTT-TTAAATACAT-G-CCCTTTGGGCAGACATTTCC--A-T-CA-AT--TTTCCCTGCCC--GAACAAAAA------TTAAC-ATGC--C-CG-AAAA----TAA-AA-TA--CAGGA-AAA-----GACAG-----GAGATAG-T--TTTT-AAATCTTATA-------A-----CACTATTG-TGACGTTCttggttttttcaaag
gi|15 : cttcacggGGTGT-TTATTAGCT------CACCTTGA--------CAAT----------TTCC--AAAAGCCAATCTCC-CCTTT------TAGC-ACAGAAA-A-ACCCC--A-G----TAAAA-TCACG-------------------TTT---TGTTGCATAACCATACATA-TATGGCCAT-CTT
gi|16 : CTGAT-GATTGAAAGGAAA-G-C-AATTTTCATGC--GCAAAAT--T---AGAC-ATGTCCGGCGGGCATCTGTTCATGCAATT-TTT-ACATGCCCGCTTCTGATTTTACC--AGA-CC-----ATGGACTTCTGGGTTAttatcagtattgaatacaaa
gi|17 : AGGAAAAG-C-AGTTTTCATGC--ATAAAAT--T--TAGAC-ATGCCCGGCG----TCTGTTCTTGCAATT-TTTCGCATGTCCGTTTCCAATTTTACG--AGGCCC-----CCGGCCATC-AGGCTTCCGtt
gi|18 : AAATTTTATTTATTGAATACAT-G-CCCTTCATGCAGGTATTTCC--A-T-CA-AT--TTCACCTGACC--AAACAAAAA------TTAAC-ATGC--C-Cggtcattt
gi|19 : agtcttcatgC-----------T----------T----TA----ACT--AATAATGAAT----TGAAG-CA---CCACAACTG--------CTAAGT-------CGCACTTG--AA--TTATTC-T------------TA-CGCAAcca
gi|2 : cacaatggatg-TTT-TTGAATACAT-G-TCCTTCGGGCAAGCATTTCC--A-T-CA-AT--TTTCCCTGCCA--GAACAAAAA------TTAACA-TGC--T-CG-AAAA----TAA-AA-TA--CAGAT-AAA-----GACTA-----GAGC-TT-G--TTTTTAAATCTT-----------------------G-TGACGTTCATTA-TTTA-CAAA---TA---------AGT-AT--TGG-TG-------GGG-----------TTTT--------TG-TTTG-TTT---------ACTT-A-----TATA-ACATA-TGA-A-GTTTTAATT---------AG---TCC--CAAA---ATCT---ATGC-T--G-CA-AGTGCACTTTAAA--AT-TT-CAA--TGCC-ATTT-TG-A-TAT-AGTCTGTGT-TTATAAGCT--A---CA-TGTAG--------CA------------TTTC--AAAG-CCA-----A-ACTTT------TA-G-AGGGAAA-A-CCCCC--A-G----CAAAA-TCACGTAACTTAACTTTTGTTGTATTT---TGTTGCATA---ATATATA-T---GCCA--CTTAC-T-TGCTTCATA-TC--AATCGAAGATAGCATCTACAGTACTCTAGAC-TAAAAT-TA-T-ATGAACTGGACA----TAAACTTGCAACAAGGGA-AAAAC-----------TGACTTCGTTCT----TT----ACA--GACGATGA-T----TTATG-CA---T-----------------TAAGT-------CGTACTTG--AA-ATTATTC-T------------TA-TTCAAGAGAGTGA---TCGGC-TGTAAGA-ATTGACT--------------------------GAT-GATTGTAAGGAAAAG-C-AATTTTCGTGA--ACAAAAT--TTATAAAC-ATGCCCGGTGGGCTTCTCTTCATGCAATT-TTT-GCATGCCCGTTCCTGATTTTACC--AGG-CCAGGAGTCGGGCATC-GGGCTACCGcgggtgccca
gi|3 : AACTTT-TTT-TTGAACACAT-GCCCCTTCAGGCAGGCATTT-C--A-T-CA-AT--TTTTCCTGCCC--AGACAAAAA------TTAACGATGT--C-CC-GAAA----TAA-AA-TA--CAGAT-GAA-----GACTG-----GAGA-AT-G--TTTT-AAATTTC----------A-----CGC--TTGTTGA-ATTCATTA-TATA-CAAT---AA---------AGTTAT--TGG-TG-------GGA-----------TTTT--------TTGTTTACTTTT--------AC---------ATTA-ACAAATTGA-A-GT----GTT---------AG---TCC--CAAA---ATCT---ATGC-T--G-CA-GATGCAC--TAAA--AT-TTGCAA--TGCCAATTT-TG---TAT-AGTCGGTGT-TTATTAGCT--G---CA-TGTGA--------CAAT----------TTTC--AAAGCC--AAATTA-ACTTT------TA-G-AGAGAAA-A-ACCCC--A-G----TAAAA-TCACG-------------------TTT---TGTTGCATA---ATATATA-T---GCCA--CTTAC-T-AGCTTTGTA-TC--AATCAAAGAT-GCG-GTAC--T--------C-TAAAAT-TA-T-ATGAACTGGACA----T------------------AAAAC----------------------T----TT----ACA--GACGATGA-T----TT-TG------TTA-AA-TG--------ATAAGT-------CGTACTTG--AA-ATTATTC-T------------TATTGC-AGAGAATGA---TCGGCTT-TATGA-ATTGACTTTATGATA--A-AC--AGC-ATGT-CGAT-GATTGTAAGGAAAAG-C-AA-TTTCGGGA--ACAAAA---T--TATAC-ATGCCCGGCAGGCTTCTCTTCATGCAATT-TTT-GC-TGCCCG-TTCCAATTTTACC--AGG--C-----CCGG--ATT--GGCTACCGggttacttcga
gi|4 : agtctttcacgaacAAAACTTT-TTT-TGAAACACAT-G-CCCTTCAGGCAGGCATTTC---A-T-CA-AT--TTTTCCTGCCC--AGACAAAAA------TTAACAATGC--C-CG-AAAA----TAA-AA-TA--CAGAT-GAA-----GACTG-----GAGA-AT-G--TTTT-AAATC------------A-----CGT--TTG---ACATTCATTA-TATA-CAAA---TA---------AGT-AT--TGG-TG-------GGA-----------TTTT--------T--TTTG-TTT---------ACTT-A-----ATTA-ACAAA-TGA-A-GT----GTT---------AG---TCC--CAAA---ATCT---ATGCGT--G-CAGAGTGCACTTTAAA--AT-TT-CAA--TGCC-ATTT-TG-A-AATA-GTCGGTGT-TTATTAGCT--G---CA-TGTGA--------CAAT----------TTTT--AAAGCCCAAAATTA-ACTTT------TAGG-AGAGAAA-A-ACCCC--A-G----TAAAA-TCACG-------------------TTT---TGTTGCATA---ATATATA-T---GCCA--CTTAC-T-AG-TTTGTA-TC--AATCAAAGAT-GCG-GTAC--T--------C-TAAATT-AA-T-ATGAACTGGACA----T------------------AAAAC-----------T----------G----TT----ACA--GACGATGA-T----TTATG-TG---TTA-AA-TG--------ATAAGT-------CGTACTTG--AA-ATTATTC-T------------TA-TGCAAGAGAATGA---TCGGC-T-TATGA-ATTGACTTTATGATA--A-AAC-AGC-ATGTCCGAT-GATTGTAAGGAAAAG-CAAATTTTCGGGA--ACAAAAT--T--TATAC-ATG-CCGGCAGGCTTCTCTTCATGCAATT-TTT-GCATGCCCG-TTCCAATTTTACC--AGG-CC-----CCGGGCATT-GGGCTACCGggtta
gi|5 : AAACTTA-CTT-TGAACAACAT-T-GCCTTCGGGCAG-CATTTCATGG-T-CACATGCTTTTCCTGCCCCAGACCAAAGAACCAAGTTGACA-TGCAGCGCG-AAAA----TAA-AA-TGACCAGAT-TAATCACTGAGTG-----GAAG-ATAG--TTTT-AAGTCTTCATCATGAGGA-----CGC--TTG-TGACATTCATTAGTATATCAAAACGTAG--------AGTTATTCTGGTTG-------TTA-----------TTTTTG------T--TTTG-TTTT--------CTTT-ACATAGACTAGACAAA-TGAGA-GT----GCTTATGTGGGAAA---TCCTGCAGAAGCATCTTAAATGC-T--GACA-AGTGCACTTTAAACCAT-TT-CAAT-TGCC-ATTT-TG-AGTATAAGTC-GTGTATTA-TAGCTGAG---CA-TGTGACTCGAAGCCAGTTGTTACATCGTTTCCGAAAGCCAAAAATTATACTTTAGAAGGTGGA-AAGGAAATATACCCCCGA-GATTATAAAA-TCTCGCCC----------------CTT---TCTTGCAAA---A---ATA-T---GCCAATCTTACGT-TGCTT
gi|6 : AAAACTTT-TTT-G-AAACACAT---CCCTTCGGGCAGGCATTTTC--A-TTCA-AT--TTTTCC-GCCCA-GAACAAAAA------TTA-CA-TGC--C-CG-AAAAAATTTAATAACTA--CAGATTGAA-----GACTG-----GAGA-AT-G--TTTT-AAATCTT----------ATATAACGC--TTG-TGACATTCATTA-TATA-CAAA---TA---------AG-TAT--TGG-TGTTTTTTAGGGGGCGTTTTTTTTTTT--------T--TTTA-TTTTGTTTGTTAACTTAA-----ATTA-AC-AA-TGA-AGGT----GTT---------AG---TCC--AAAA---ATCT---ATGC-TTGG-CA-AGTGCACTTTAAA--ATATT-CAAATTGCC-ATTTGTGAA-TATAAGTCGGTGT-TTATTAGCT--GGCACA-TGTGA--------CA------------TTTC--AAAAAACCAAATTA-ACCTT------TAGACAGGAAAA-A-ACCCC--A-G----TAAAATTCACG-------------------TTT---TGTTGCATA---AAAAATATT---GCCA--CTTAC-TAAGCTTTGTATTC--AATttagtcatatc
gi|7 : tcttcacgga-TAAAAT-GAAC-ATGAA---GACAACTGC------------------AAAACATCTACAATTTT----------T----CT----ACA--G-TGATGA-T----TTATG-GA---TTATAA-TG--------ATAAGTA------CGTACT-G--AA-----TCC-T------------TA-TGCAAGAGA-TGA---TCGGC-TGTATGA-ATTGACTTTATCTTA--A-ACCAAGC-ATGTCCGATTGATTGTAGAAAAAAGGC-A--TTTCAGGA--ACAAAAAAAT--TACAC-ATGCCCGGCGGGGTTCTCTTCATGCCATT-TTT-GCATGCCCGTTCCCAATTTTACCCAGGG-CC-----CCGGGTATC-GTGCTACCGactgataaaagatg
gi|8 : atcaaagaagaaagtcttataaaaacgtaactatacaGCTTCATG------ATCACATACAGCATCTAC--T--------C-TAAAAC-TA-T-CTGAGCAGGACA----C-------------------AAAC-----------T----------T----ggtatttcgaaggga
gi|8 : tatcccctatat----TT----ACA----CAATGG-TGAGGTTATG-CT---TTA-AA-TG--------TTAAGTTGTACAGTGTACTTG--AA-AGTATTCATGAATGGAAGAGGTG-CCCATGAGAATGACAGTCTGT-T-TA--A-ATTGTTTTTATTATA--A-A---AACTATGTCC-AT-GATTGAAAGG-AAAG-C-AATTCTCTTGC--ATGAAA---T--TAAAC-ATGCCCGACgcaactggggatcgactatttcttacaaccccgctaaacaaagcattgttgccaatgttgcttacacaatggtgaggttatgctttaaatgttaagttgtacagtgtacttgaaagtattcatgaatggaagaggtgcccatgagaatgacagtctgtttaaattgtttttattataaaaactatgtccatgattgaaaggaaagcaattctcttgcatgaaattaaacatgcccgact
gi|9 : tatcccctatatgcttcatgatcacatacagcatctactctaaaactatctgagcaggacacaaacttgcaactggggatcgactatttcttacaaccccgctaaacaaagcattgttgccaatgttgc-------------------TTT---TGTTGCTTA---ATATTTA-T---GCCA--CTTGC-T-AGCTTCGAT-TCGTGATCAAAGATAGCATCTACT-T--------T-TAAAAT-TA-T-ATGAGATGGACA----C-------------------AAAC-----------T----------TGCAACTGGGGACA--GAC--T---T----TTATACCACTTTTA-AA-AA--------ATAA-T-------CATAGTTGGCAACATTGT---T------------TA-C---AGATGGTGA---T-----T-TATGC-ATTt
gi|9 : agaagcgtatagtttaactttgtaAAAAT-AA-TCAT-AGTTGG-------C------------------AACAT-----------TG---------T----TT----ACA--GATGGTGA-T----TTATG-CA---TTT-AA-AG--------TTAAGT-------TGTACTTG--AA-ATT---------------------------AGAATGA---TCAGCAG-CATGT-ACTGACTTTATCAT-----A---AAC-ATGTCtaaagttaagttgtacttgaaattagaatgatcagcagcatgtactgactttatcataaacatgtca
blockSeqs : A ATT T GC TG . T C GC C CA ACCAAG GA AG G . AATT T C AC TG TCACT . T AG T CATCATGAGGACGC T G T ACG G T TC T TTTTTTAGGGGGCGTTTTTTTTTTTT C TGTTTGTTAACTTAA G T G G TTTA TATGTGGGA . TG AGC TAA G TG A G CC A G AT A G AG AA A GGCA C CTCGAAGCCAGTTGTTACATCG CG G CAAT T T AGAAGG GAC T T CGA ATTA T TAACTTAACTTTTGTTGTA . ACC T ATG AT GT T GT A AT AGTACTCTAGA . T A C C TAAACTTGCAACAAGGGAAAAACTGACTTCGTTCTTT . AA GAGG CCACTT C C C TGTACAG GC CA A GAATGGAAGAGG TTG CAG CG TG G C T AAACCA T CT T A A A G A T T . TTTAT G . C G . C C CA C AGGAG T
blockSeqs : . TT T G . . . . . A A . AA . . . . . . . A . . . T . ATAACACTA . . . . . T . . GGATTTTTTG . TCTTTACATAG . . . . . . . . . . . . . . . . . T . . AA AA . GAG . CAAT . C CAAA T . . GC . . A . . CCC . . . . T TA . . A AT TT . T . . C ACTGCAAAACATCTACAATTTTTCT . A . CA T . C A . A . . CA . CG TA . G A ATTAA . CT . A A A . . T T . AAATT G . C G . . C . . . .
blockSeqs : . TT T G . . . . . C . . A . . . . . . . A . . . G . ATATAACGC . . . . . T . . TTATTTTTGT . ACTTA . . . . . . . . . . . . . . . . . . . . A A . A . CAAT . C AAAA T . . GG . . A . . . . . . . . T . . A AT T . A . . C CAAACTTGCAACTGGGG . A . CA . . A . . A . . CG . CG TG . A T AAAAC . CT . G A A . . C C . TTT G . A G . . C . . . .
blockSeqs : . TT C G . . . . . T . . A . . . . . . . G . . . G . ACGC . . . . . . . . GGGTTTTTG . ACTTA . . . . . . . . . . . . . . . . . . . . A A . G . CAAT . C CCAA T . . GA . . A . . . . . . . . T . . . G T . G . . C CAACATTGTTT . A . TG . . A . . A . . TT . CG TT . T G AATA . CC . A A A . . T C . TTT G . C G . . C . . . .
blockSeqs : . TG C G . . . . . T . . A . . . . . . . G . . . G . ACGT . . . . . . . . GGATTTTT . TAC . . . . . . . . . . . . . . . . . . . . . A . G . CA . A CA T . . G . . A . . . . . . . . T . . . G T . T . . A TAAAACTGTT . A . GA . . A . . A . . TG . CG TG . T G AAAC . CC . T A A . . T A . TT G . C G . . C . . . .
blockSeqs : . TG A T . . . . . T . . A . . . . . . . T . . . G . . . . . . CA . . AA . . . G . . A . . . . . . . . T . . . T . . T TAAAACTTT . G . CT . . T . . A . . TG . CG AG . T G ATT . CC . T A A . . T A . GT A . C G . . T . . . .
blockSeqs : . G C . . . . . . T . . A . . . . . . . . A . . . . A . CA . . A . . A . . CC . CT C . T C AAA . C . T A A . . T G . GT T . C C . . T . . . .
blockSeqs : . . . . . . T . . . . . C . CA T . T T AA . . . T A A . . T G . TT T . G C . . T . . . .
blockSeqs : . . . . . . . . . . . T . . C A . . . A . . . . T G . TT C . . C . . . . . . .
blockSeqs : . . T . . . . . . . . . . . . . A . TT A . . C . . . . . . .
blockSeqs : . . . . . . T . . . .
blockSeqCons : G** A* ***** G*** ATACGC*************** ********* GGGTTTTTT*************************** TACTTA************** *** G***** CAAT****************** CAAA G** A*** *** T********** T* ** A* N******** CG TG* AAA****** **
originalCons : AAAACTTT-TTT-TTAAACACAT-G-CCCTTCGGGCAGGCATTTCC--A-T-CA-AT--TTTCCCTGCCC--GAACAAAAA------TTAACAATGC--C-CG-AAAA----TAA-AA-TA--CAGAT-GAA-----GACTG-----GAGA-AT-G--TTTT-AAATCTT----------A-----CGC--TTG-TGACGTTCATTA-TATA-CAAA---TA---------AGTTAT--TGG-TG-------GGG-----------TTTT--------T--TTTG-TTTT--------ACTT-A-----ATTA-ACAAA-TGA-A-GT----GTT---------AG---TCC--CAAA---ATCT---ATGC-T--G-CA-AGTGCACTTTAAA--AT-TT-CAA--TGCC-ATTT-TG-A-TATAAGTCGGTGT-TTATTAGCT--G---CA-TGTGA--------CAAT----------TTTC--AAAGCCCAAAATTA-ACTTT------TAGG-AGGGAAA-A-ACCCC--A-G----TAAAA-TCACG-------------------TTT---TGTTGCATA---ATATATA-T---GCCA--CTTAC-T-AGCTTCGTA-TC--AATCAAAGATAGCGTCTAC--T--------C-TAAAAT-TA-T-ATGAACTGGACA----C------------------AAAAC-----------T----------T----TT----ACA--GACGATGA-T----TTATG-CA---TTA-AA-TG--------NTAAGT-------CGTACTTG--AA-ATTATTC-T------------TA-CGCAAGAGAATGA---TCGGC-T-TATGA-ATTGACTTTATNATA--A-A---AAC-ATGTCCGAT-GATTGNAAGGAAAAG-C-AATTTTCNTGC--ACAAAAT--T--TAGAC-ATGCCCGGCGGGCTTCTGTTCATGCAATT-TTT-GCATGCCCGCTCCCGATTTTACC--AGG-CC-----CCGGGCATC-GGGCTACCG
finalCons : AAAACTTT-TTT-TTAAACACATG--CCCTTCGGGCAGGCATTTCC--A-T-CA-AT--TTTCCCTGCCC--GAACAAAAA------TTAACA-TGC--C-CG-AAAA----TAA-AA-TA--CAGAT-GAA-----GACTG-----GAGA-ATG---TTTT-AAATCTTATACGC---------------TTG-TGACGTTCATTA-TATA-CAAA---TA---------AGTTAT--TGG-TGGGGTTTTTT---------------------------TTTG-TTTTACTTA--------------ATTA-ACAAA-TGA-A-GT----GTT---------AG---TCC--CAAA---ATCT---ATGC-T--G-CA-AGTGCACTTTAAA--AT-TT-CAA--TGCC-ATTT-TG-A-TATAAGTCGGTGT-TTATTAGCTG-----CA-TGTGACAAT------------------TTTC--AAAGCCCAAAATTA-ACTTT------TAG--AGGGAAA-A-ACCCCA---G----TAAAA-TCACG-------------------TTT---TGTTGCATA---ATATATA-T---GCCA--CTTAC-T-AGCTTCGTA-TC--AATCAAAGATAGCGTCTACT----------C-TAAAATT-A-T-ATGAACTGGACA----C------------------AAAAC-----------T----------T----TT----ACA--GACGATGA-T----TTATG-CA---TTA-AA-TGN--------TAAGT-------CGTACTTG--AA-ATTATTC-T------------TA-CGCAAGAGAATGA---TCGGCTG-TATGA-ATTGACTTTATNATAAA------AAC-ATGTCCGAT-GATTGNAAGGAAAAG-C-AATTTTCNTGC--ACAAAAT--T--TAGAC-ATGCCCGGCGGGCTTCTGTTCATGCAATT-TTT-GCATGCCCGCTCCCGATTTTACC--AGG-CC-----CCGGGCATC-GGGCTACCG
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|20 ): TTGGACCAAACGTTCTTGTAAACACCAATACCGT
Alignments
lowQualScore : 11111 11 111111 1111 11111 11111 1111 5555555555555555 1 111 1 44444444444444444444 7777777777777777777777777777 1111 222222222 111 111 111 11 111 1 222222 4444444444444444444444 1111 111111 11 111 1111 4444444444444444444 11 1 44444444444 99999999999999999999999999999999999999999999999999 1111 111111111 1111111 222222222222 222222222 2222222
lowQualScore : 5 555 1 5 5 0 55555 5 66 1 11 444444 5 5 66 5 5 2222 5 5 77 5 0 44444 44444 5 5555 2222222222222222 77 5 3 6 111 6 1 99 6 55555555555555555555 888 6 1111111111111111111111111111 6 6 6 6 4444 666666666 111 99 111 111 6 99 6 6 99 6 6 55 6 6 222 5 0 5 333333 2222222222222222222222 77 4 2222 1 5 666666 99 000 8888 2222 5 7777777777777777777 888 888 0 5 888 11 555 1 1 77 7 666 00000000000 5 55 5 5 4 11111111111111111111111111111111111111111111111111 66 0 5 0000 1 8 4 888888888 8888888 1 4 222222222222 4 0 2 6 3 0 3 2 555555555 3 11 3 4 9 3 3 2 1 44 2222222 2 3 0 1 3 3 3 4 55 3 99999 3
lowQualScore : . ... . . . . ..... . .. . .. ...... . . .. . . .... . . .. . . ..... ..... . .... ................ .. . . . ... . . .. . .................... ... . ............................ . . . . .... ......... ... .. ... ... . .. . . .. . . .. . . ... . . . ...... ...................... .. . .... . . ...... .. ... .... .... . ................... ... ... . . ... .. ... . . .. . ... ........... . .. . . . .................................................. .. . . .... . . . ......... ....... . . ............ . . . . . . . . ......... . .. . . . . . . . .. ....... . . . . . . . . .. . ..... .
lowQualScore : 0 111 1 0 0 2 44444 0 99 1 99 444444 0 0 99 0 7 1111 7 7 99 7 4 33333 33333 7 1111 0000000000000000 99 7 3 7 777 7 3 22 7 55555555555555555555 333 7 0000000000000000000000000000 7 7 7 7 2222 777777777 777 22 777 777 7 22 7 7 22 7 7 88 7 7 555 5 7 7 999999 1111111111111111111111 99 3 1111 4 7 444444 33 000 0000 1111 7 5555555555555555555 888 888 4 0 888 99 999 7 4 99 3 333 22222222222 7 55 0 0 5 00000000000000000000000000000000000000000000000000 99 1 0 6666 4 9 4 777777777 9999999 9 4 888888888888 4 1 3 6 6 5 5 3 666666666 6 66 6 5 5 3 3 4 0 66 9999999 3 3 2 4 6 6 6 9 00 6 11111 6
consensus : AAAACTTT-TTT-TTAAACACAT-GCCC-TTCGGGCAGGCATTTCC--A-TCA-AT--TTTCCCTGCCC--GAACAAAAA------TTAAC-A-TGC--C-CG-AAAA----TAA-AA-TA--CAGA-TGAA-----GACTG-----GAGA-AT-G--TTTTAAATCTT----AT----A---CGC--TTGT-GACGTTCATTA-TATA-CAAA---TA-AGTTAT--TGG-TG-------GGA----------TTTTT-T-TTTG-TTTT-----------------ACTT-A-----ATTA-ACAAAT-GA-A-GT----GTT---------AG---TCC--CAAA---ATCT---ATGC-T--G-CA-AGTGCACTTTAAA--AT-TT-CAA--TGCCA-TTT-TG-A-TATAAGTCGGTGT-TTATTAGCT--G---CATGTGA--------CAAT----------TTTC--AAAGCCCAAAATTA-ACTTT------TAG--AGGGAAAA---ACCCC--A-G----TAAAA-TCACG-------------------TTT---TGTTGCATA---ATATATA-T---GCCA--CTTAC-T-AGCTTCGTA-TC--AATCAAAGATAGCGTCTAC--T--------C-TAAAAT-TA-T-ATGAACTGGACA----C------------------AAAAC-----------T----------TTTACA--GACGATGA-T----TTATGCATTA-AA-TG--------NTAAGT-------CGTACTTGAAATTATTC-T------------TA-CGCAAGAGAATGATCGGCTGTATGA-ATTGACTTTATNATA--A-A---AAC-ATGTCCGAT-GATTGNAAGGAAAAG-C-AATTTTCNTGC--ACAAAAT--T--TAGAC-ATGCCCGGCGGGCTTCTGTTCATGCAATT-TTT-GCATGCCCGCTCCCGATTTTACC--AGG-CC-----CCGGGCATC-GGGCTACCG
Reference ( family-7901 ) : AAAACTTT-TTT-TTAAACACAT-GCCC-TTCGGGCAGGCATTTCC--A-TCA-AT--TTTCCCTGCCC--GAACAAAAA------TTAAC-A-TGC--C-CG-AAAA----TAA-AA-TA--CAGA-TGAA-----GACTG-----GAGA-AT-G--TTTTAAATCTT----AT----A---CGC--TTGT-GACGTTCATTA-TATA-CAAA---TA-AGTTAT--TGG-TG-------GGG----------TTTTT-T-TTTG-TTTT-----------------ACTT-A-----ATTA-ACAAAT-GA-A-GT----GTT---------AG---TCC--CAAA---ATCT---ATGC-T--G-CA-AGTGCACTTTAAA--AT-TT-CAA--TGCCA-TTT-TG-A-TATAAGTCGGTGT-TTATTAGCT--G---CATGTGA--------CAAT----------TTTC--AAAGCCCAAAATTA-ACTTT------TAG--AGGGAAAA---ACCCC--A-G----TAAAA-TCACG-------------------TTT---TGTTGCATA---ATATATA-T---GCCA--CTTAC-T-AGCTTCGTA-TC--AATCAAAGATAGCGTCTAC--T--------C-TAAAAT-TA-T-ATGAACTGGACA----C------------------AAAAC-----------T----------TTTACA--GACGATGA-T----TTATGCATTA-AA-TG--------NTAAGT-------CGTACTTGAAATTATTC-T------------TA-CGCAAGAGAATGATCGGCTGTATGA-ATTGACTTTATNATA--A-A---AAC-ATGTCCGAT-GATTGNAAGGAAAAG-C-AATTTTCNTGC--ACAAAAT--T--TAGAC-ATGCCCGGCGGGCTTCTGTTCATGCAATT-TTT-GCATGCCCGCTCCCGATTTTACC--AGG-CC-----CCGGGCATC-GGGCTACCG
gi|1 : AACTTT-TTT-GTAAATACATTGCCC-TTTGGGCAGA-ATTTCC--AGTCA-AT--TTTCCCT-CCC--GAACAAAAA------TTAAA-A-TGC--C-CGGAAAA----TAA-A--TA--CAGG-AAAA-----GACTGTCACAGAGA-TT-AGTTTTTAAATCTT----AT----AATACTA--TTGT-GACGTTCATCAGTATA-CAAA---TA-CCGTAT--TG--TG-------GTC----------TTTGT-T-GTTG-TTTTGTCTAATATTTTTTTATACTT-A-----ATTA-ACAAAT-GA-A-GT----TCT---------AGACGTCC--TAAA---ATCT---ATGC-T--G-CA-AGTGCATTTAAAA--GT-TC-CAA--TGCCA-TTT-T--A-TATA-GTCGGTGT-TTATAAGCTT-G---CATGTGG--------CA------------TTTC--AAAGCC----A--A-ACGTT------TAG--AGGGAAAA---CCCCC--CTG----CAAAA-TCACA-------------------TTTAACT-TTGTAT-----TTTATA-T---GCCA--CTTAC-G-AACTTCGTATTC--AATCAAAGATAGCATCTACGAT--------CGCAAAATGTA-T-ATGAAACGGACA----CAAACATGCAACTAGGGAAAAAAC-----------T----------CTGACATCGACGGTA-------TTATGCATTA-AT-TGCCATAAAAATAAGT-------CTTACTTGAAAGTAGTC-T------------TG-CGCAAGAGAATGAT--GCT-TATGA-ATT-ACTTTTTGAT-----A---AAC-ATGTCCG-T-GA-TGTAA-GAAATG-C-AA-TTTCGTGCGAACAAA----T--TAAACGATGCCCGGCAGGATTCC-TTCATGCAATCGTTT-GCATGCCCCTTCCCGA--TTACC--AGG-CC-----CCGGGCATC-GGGCTACCG
gi|10 : gtcttcactggATCA-AG-TG--------CTAAGT-------TGCACTTGAAATTATTC-T------------TA-CACAAGAGG-TGCCC------ATGAGAATGA-TCTGCTATA--ATA---AAC-ATGTCTGAG-GATTGAAAGGAAA-G-C-AATTTTCTTGC--ACAAAA-------------------------TTCTGTTCATGCAATT-TTT-ACATGCCCACTTCTGATTTTACC--AGG-CC-----CCGGGCATC-GGGCTACggttatttcggaagac
gi|11 : acgcattgttgatgcttttactaaaacatctgtacaactgtgattaagcatcaagtgctaagttGA-ATTGACTGTATAATATTA-A---AAC-ATGTCTGAT-GATTGAAAGGAAA-G-C-AATTTTGTTGT--GCAAAAT--T---AGAC-ATGCCCGGTGGGCTTCTGCTCATGCAATT-TTT-ACATGCCTGCTCTCAATTTTATC--AGG-CC-----CCGGGCATC-AGGCTACCggggttattttgaag
gi|12 : ttagtaatacaaatatgttcttaaaATAATCGGCTGTATGA--TTGGCTATATTA-A--T-T---AAC-TTG----AT-AAT--GAAG--AAAG-C-AACTTTCCTGC--ACAAAAG--T---AGGT-ATGTCTGGCGTGCTTCTGGTTGTTTAATT-GTT-ATACTCCAGCTCCCGA-TTTAAC--GTG-TG-----CCGGGCTTC-GTGCTACagattattttaaa
gi|13 : ATGATCGGCTACATTA-ATTAG---TATGATA--A----------------------TG-AAGGAAA-G-T-AATTTTCCTGC--ACAAAAG--T---AGGT-ATGTCTGGTGGGATTCTGATAGTTTAATT-GTC-ACACTCCAGCTCCCGATTTTAAC--ATG-TG-----CCGGGCTTC-GTGCTACttgttttttttcaaagact
gi|14 : AAACTTT-TTT-TTAAATACAT-GCCC-TTTGGGCAGACATTTCC--A-TCA-AT--TTTCCCTGCCC--GAACAAAAA------TTAAC-A-TGC--C-CG-AAAA----TAA-AA-TA--CAGG-AAAA-----GACAG-----GAGATAG-T--TTTTAAATCTT----ATA---A---CACTATTGT-GACGTTCttggttttttcaaag
gi|15 : cttcacggGGTGT-TTATTAGCTC-A---CCT-TGA--------CAAT----------TTCC--AAAAGCCAATCTCC-CCTTT------TAGC-ACAGAAAA---ACCCC--A-G----TAAAA-TCACG-------------------TTT---TGTTGCATAACCATACATA-TATGGCCAT-CTT
gi|16 : CTGAT-GATTGAAAGGAAA-G-C-AATTTTCATGC--GCAAAAT--T---AGAC-ATGTCCGGCGGGCATCTGTTCATGCAATT-TTT-ACATGCCCGCTTCTGATTTTACC--AGA-CC-----ATGGACTTCTGGGTTAttatcagtattgaatacaaa
gi|17 : AGGAAAAG-C-AGTTTTCATGC--ATAAAAT--T--TAGAC-ATGCCCGGCG----TCTGTTCTTGCAATT-TTTCGCATGTCCGTTTCCAATTTTACG--AGGCCC-----CCGGCCATC-AGGCTTCCGtt
gi|18 : AAATTTTATTTATTGAATACAT-GCCC-TTCATGCAGGTATTTCC--A-TCA-AT--TTCACCTGACC--AAACAAAAA------TTAAC-A-TGC--C-Cggtcattt
gi|19 : agtcttcatgC-----------T----------TTAACT--AATAATGAAT----TGAAGCACCACAACTG--------CTAAGT-------CGCACTTGAA-TTATTC-T------------TA-CGCAAcca
gi|2 : cacaatggatg-TTT-TTGAATACAT-GTCC-TTCGGGCAAGCATTTCC--A-TCA-AT--TTTCCCTGCCA--GAACAAAAA------TTAAC-A-TGC--T-CG-AAAA----TAA-AA-TA--CAGA-TAAA-----GACTA-----GAGC-TT-GT-TTTTAAAT-------------------C--TTGT-GACGTTCATTA-TTTA-CAAA---TA-AG-TAT--TGG-TG-------GGG----------TTTTT-G-TTTG--TTT-----------------ACTT-A-----TATA-ACATAT-GA-A-GTTTTAATT---------AG---TCC--CAAA---ATCT---ATGC-T--G-CA-AGTGCACTTTAAA--AT-TT-CAA--TGCCA-TTT-TG-A-TAT-AGTCTGTGT-TTATAAGCT--A---CATGTAG--------CA------------TTTC--AAAG-CCA-----A-ACTTT------TAG--AGGGAAAA---CCCCC--A-G----CAAAA-TCACGTAACTTAACTTTTGTTGTATTT---TGTTGCATA---ATATATA-T---GCCA--CTTAC-T-TGCTTCATA-TC--AATCGAAGATAGCATCTACAGTACTCTAGAC-TAAAAT-TA-T-ATGAACTGGACA----TAAACTTGCAACAAGGGA-AAAAC-----------TGACTTCGTTCTTTACA--GACGATGA-T----TTATGCAT-----------------TAAGT-------CGTACTTGAAATTATTC-T------------TA-TTCAAGAGAGTGATCGGCTGTAAGA-ATTGACT--------------------------GAT-GATTGTAAGGAAAAG-C-AATTTTCGTGA--ACAAAAT--TTATAAAC-ATGCCCGGTGGGCTTCTCTTCATGCAATT-TTT-GCATGCCCGTTCCTGATTTTACC--AGG-CCAGGAGTCGGGCATC-GGGCTACCGcgggtgccca
gi|3 : AACTTT-TTT-TTGAACACAT-GCCCCTTCAGGCAGGCATTTC---A-TCA-AT--TTTTCCTGCCC--AGACAAAAA------TTAACGA-TGT--C-CC-GAAA----TAA-AA-TA--CAGA-TGAA-----GACTG-----GAGA-AT-G--TTTTAAATTTC----A---------CGC--TTGTTGA-ATTCATTA-TATA-CAAT---AA-AGTTAT--TGG-TG-------GGA----------TTTTT-TGTTTACTTTT-----------------AC---------ATTA-ACAAATTGA-A-GT----GTT---------AG---TCC--CAAA---ATCT---ATGC-T--G-CA-GATGCACT--AAA--AT-TTGCAA--TGCCAATTT-TG---TATA-GTCGGTGT-TTATTAGCT--G---CATGTGA--------CAAT----------TTTC--AAAGCC--AAATTA-ACTTT------TAG--AGAGAAAA---ACCCC--A-G----TAAAA-TCACG-------------------TTT---TGTTGCATA---ATATATA-T---GCCA--CTTAC-T-AGCTTTGTA-TC--AATCAAAGAT-GCG-GTAC--T--------C-TAAAAT-TA-T-ATGAACTGGACA----T------------------AAAAC----------------------TTTACA--GACGATGA-T----TT-TG--TTA-AA-TG--------ATAAGT-------CGTACTTGAAATTATTC-T------------TATTGC-AGAGAATGATCGGCTTTATGA-ATTGACTTTATGATA--A-AC--AGC-ATGT-CGAT-GATTGTAAGGAAAAG-C-AA-TTTCGGGA--ACAAAA---T--TATAC-ATGCCCGGCAGGCTTCTCTTCATGCAATT-TTT-GC-TGCCCG-TTCCAATTTTACC--AGG--C-----CCGG--ATT--GGCTACCGggttacttcga
gi|4 : agtctttcacgaacAAAACTTT-TTT-TGAAACACAT-GCCC-TTCAGGCAGGCATTTC---A-TCA-AT--TTTTCCTGCCC--AGACAAAAA------TTAAC-AATGC--C-CG-AAAA----TAA-AA-TA--CAGA-TGAA-----GACTG-----GAGA-AT-G--TTTTAAATC------------A---CGT--TTG---ACATTCATTA-TATA-CAAA---TA-AGT-AT--TGG-TG-------GGA----------TTTTT-T-TT-G-TTT------------------ACTT-A-----ATTA-ACAAAT-GA-A-GT----GTT---------AG---TCC--CAAA---ATCT---ATGCGT--G-CAGAGTGCACTTTAAA--AT-TT-CAA--TGCCA-TTT-TG-A-AATA-GTCGGTGT-TTATTAGCT--G---CATGTGA--------CAAT----------TTTT--AAAGCCCAAAATTA-ACTTT------TAGG-AGAGAAAA---ACCCC--A-G----TAAAA-TCACG-------------------TTT---TGTTGCATA---ATATATA-T---GCCA--CTTAC-T-AGTTT-GTA-TC--AATCAAAGAT-GCGG-TAC--T--------C-TAAATT-AA-T-ATGAACTGGACA----T------------------AAAAC-----------T----------GTTACA--GACGATGA-T----TTATGTGTTA-AA-TG--------ATAAGT-------CGTACTTGAAATTATTC-T------------TA-TGCAAGAGAATGATCGGCT-TATGA-ATTGACTTTATGATA--A-AAC-AGC-ATGTCCGAT-GATTGTAAGGAAAAG-CAAATTTTCGGGA--ACAAAAT--T--TATAC-ATG-CCGGCAGGCTTCTCTTCATGCAATT-TTT-GCATGCCCG-TTCCAATTTTACC--AGG-CC-----CCGGGCATT-GGGCTACCGggtta
gi|5 : AAACTTA-CTT-TGAACAACAT-TGCC-TTCGGGCAG-CATTTCATGG-TCACATGCTTTTCCTGCCCCAGACCAAAGAACCAAGTTGAC-A-TGCAGCGCG-AAAA----TAA-AA-TGACCAGA-TTAATCACTGAGTG-----GAAG-ATAG--TTTTAAGTCTTCATCATGAGGA---CGC--TTGT-GACATTCATTAGTATATCAAAACGTAGAGTTATTCTGGTTG-------TTA----------TTTTTGT-TTTG-TTTT-----------------CTTT-ACATAGACTAGACAAAT-GAGA-GT----GCTTATGTGGGAAA---TCCTGCAGAAGCATCTTAAATGC-T--GACA-AGTGCACTTTAAACCAT-TT-CAAT-TGCCA-TTT-TG-AGTATAAGTC-GTGTATTA-TAGCTGAG---CATGTGACTCGAAGCCAGTTGTTACATCGTTTCCGAAAGCCAAAAATTATACTTTAGAAGGTGG--AAAGGAAATATACCCCCGA-GATTATAAAA-TCTCGCCC----------------CTT---TCTTGCAAA---A---ATA-T---GCCAATCTTACGT-TGCTT
gi|6 : AAAACTTT-TTT-G-AAACACAT--CCC-TTCGGGCAGGCATTTTC--ATTCA-AT--TTTTCC-GCCCA-GAACAAAAA------TT-AC-A-TGC--C-CG-AAAAAATTTAATAACTA--CAGATTGAA-----GACTG-----GAGA-AT-G--TTTTAAATCTT----ATATA-A---CGC--TTGT-GACATTCATTA-TATA-CAAA---TA-AG-TAT--TGG-TGTTTTTTAGGGGGCGTTTTTTTTTTT-T-TTTA-TTTTGTTTGTTA---------ACTTAA-----ATTA-AC-AAT-GA-AGGT----GTT---------AG---TCC--AAAA---ATCT---ATGC-TTGG-CA-AGTGCACTTTAAA--ATATT-CAAATTGCCA-TTTGTGAA-TATAAGTCGGTGT-TTATTAGCT--GGCACATGTGA--------CA------------TTTC--AAAAAACCAAATTA-ACCTT------TAGACAGGAAAAA---ACCCC--A-G----TAAAATTCACG-------------------TTT---TGTTGCATA---AAAAATATT---GCCA--CTTAC-TAAGCTTTGTATTC--AATttagtcatatc
gi|7 : tcttcacgga-TAAAAT-GAAC-ATGAA---GACAACTGC------------------AAAACATCTACAATTTT----------TCTACA--G-TGATGA-T----TTATGGATTATAA-TG--------ATAAGTA------CGTACT-GAA----TCC-T------------TA-TGCAAGAGA-TGATCGGCTGTATGA-ATTGACTTTATCTTA--A-ACCAAGC-ATGTCCGATTGATTGTAGAAAAAAGGC-A--TTTCAGGA--ACAAAAAAAT--TACAC-ATGCCCGGCGGGGTTCTCTTCATGCCATT-TTT-GCATGCCCGTTCCCAATTTTACCCAGGG-CC-----CCGGGTATC-GTGCTACCGactgataaaagatg
gi|8 : atcaaagaagaaagtcttataaaaacgtaactatacaGCTTCATG------ATCACATACAGCATCTAC--T--------C-TAAAAC-TA-T-CTGAGCAGGACA----C-------------------AAAC-----------T----------Tggtatttcgaaggga
gi|8 : tatcccctatatTTACA----CAATGG-TGAGGTTATGCTTTA-AA-TG--------TTAAGTTGTACAGTGTACTTGAAAGTATTCATGAATGGAAGAGGTG-CCCATGAGAATGACAGTCTGTTTAA-ATTGTTTTTATTATA--A-A---AACTATGTCC-AT-GATTGAAAGG-AAAG-C-AATTCTCTTGC--ATGAAA---T--TAAAC-ATGCCCGACgcaactggggatcgactatttcttacaaccccgctaaacaaagcattgttgccaatgttgcttacacaatggtgaggttatgctttaaatgttaagttgtacagtgtacttgaaagtattcatgaatggaagaggtgcccatgagaatgacagtctgtttaaattgtttttattataaaaactatgtccatgattgaaaggaaagcaattctcttgcatgaaattaaacatgcccgact
gi|9 : tatcccctatatgcttcatgatcacatacagcatctactctaaaactatctgagcaggacacaaacttgcaactggggatcgactatttcttacaaccccgctaaacaaagcattgttgccaatgttgc-------------------TTT---TGTTGCTTA---ATATTTA-T---GCCA--CTTGC-T-AGCTTCGAT-TCGTGATCAAAGATAGCATCTACT-T--------T-TAAAAT-TA-T-ATGAGATGGACA----C-------------------AAAC-----------T----------Tt
gi|9 : agaagcgtatagtttaactttgtaAAAAT-AA-TCAT-AGTTGG-------C------------------AACAT-----------TG---------TTTACA--GATGGTGA-T----TTATGCATTT-AA-AG--------TTAAGT-------TGTACTTGAAATT---------------------------AGAATGATCAGCAGCATGT-ACTGACTTTATCAT-----A---AAC-ATGTCgcaactggggacagacttttataccacttttaaaaaataatcatagttggcaacattgtttacagatggtgatttatgcatttaaagttaagttgtacttgaaattagaatgatcagcagcatgtactgactttatcataaacatgtca
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|20 ): TTGGACCAAACGTTCTTGTAAACACCAATACCGT