lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 11111 111 7777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 111 222 11 7777777777777777777777777777777777777777777777777777777777777777777777777777 1 5555555 1111111 1111 11111
lowQualScore : 1 6 11111 4 5 000 0 9999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 111 6 88888 55 222 3 3 7 3 7 3 3 00 3 7777777777777777777777777777777777777777777777777777777777777777777777777777 4 1 4 55 0 4 4 3 3 2222222 44 3 3 7 1 8888888 1111 00000
lowQualScore : . . ..... . . ... . ............................................................................................................................................................................................................................................................................................................................................................................... ... . ..... .. ... . . . . . . . .. . ............................................................................ . . . .. . . . . . ....... .. . . . . ....... .... .....
lowQualScore : 9 7 66666 4 0 888 4 0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 222 7 88888 00 000 6 6 3 6 6 6 6 88 6 0000000000000000000000000000000000000000000000000000000000000000000000000000 0 6 0 55 8 0 1 6 6 1111111 88 6 3 3 9 3333333 4444 00000
consensus : TATTCGTAGTCCATGTATN--G-A-TAA-CATATTT-CGCCAGTAC------TG-T------C-AT----------C-----------------ACT-------------------GT--------------------A--C------C-------CGCACNT-TGTTG-TGT----TA-AGAA----TGAT-TA---C---TA-TCAAAACAGN-AC-GGTT---ATCAT-NT----TTAGACACT--AACT-CGA-CACGGGT-G--CA--AGTTA-AAA-AGGTT-CGATGT-AAT-----TAA-GAATGATT-----TACTATCAAAACAG--T-CTGGTC---A---TT-TTAAG------AC----------A-------------C----------AAAG-C-C--GGGAAGA-T-CG----GATTAC--AGCTAACCGCTCATGC-AG-A-CA-GCGC-GTTT-GATN-TG-CC-------G-C---------N--GAGATAAAACC-CGTCCGTGCAAAAT-T-TAATGTCATTTTTTA-TGA-CAC--CCG-TGGAT-T--CACATGC-ACCATGTA-AGTATCCACG-CC--TCT-TCA-GGCGA-TACGACTCCTGAGCCGCATA-CN----AC----ACC-----ATGAATTTGTTTT
Reference ( gi|9 ) : TATTCGTAGTCCATGTCTC--G-A-TAA-CATATTT-CACCAATAC------TG-T------C-AT----------C-----------------ACT-------------------GT--------------------A--C------C-------CACACTT-TGTTG-TAT----TA-AGAA----TGAT-TG---C---TG-TCAAAACAGG-AC-GGTT--AATCGT-TT----TTGGACACT--AACA-CGA-CACAGGT-G--CA--AGTTA-AAA-GGGTT-CGGTGT-AAT-----TAA-GAATGATTATATGTACTATCAAAACAG--T-CTGGTC---A---TT-TTAAG------AC----------A-------------C----------AAAG-C-C--GGGAAGG-T-CG----GATTAC--AGCTATCTGCTCATGC-AG-A-CA-GTGC-GTTT-GATG-TG-CC-------A-T---------G--GAGACATACCC-CGTCCCTGCAAAAT-T-TAATGTCATTTTTTA-TGA-CACTACCG-TGGAT-T--CACATGC-ACCCTGTA-AGTATCCACACTT-TTCT-TCA-GGTGA-TATGACTCCTGAGCCGCATA-CA----AC----ACC-----ATGAATTTGTTTT
gi|4 : TATTCGTCGTCCGTGTATT--G-A-TAA-CATATTT-CGCCAGTGCGGTAATTG-T------C-AT----------CTTTATTCCTTAGGAGTAAAT-------------------GT--------------------A--C------C-------CCAACTT-TGTTG-CGT----TG-AGAA----TGAA-TA---C---TA-CCAAAACAGA-AC-AATT--CAT--T-CA----ATAAACA----AACT-CCA-CACGGAT-G--CA--AATTT-AAA-AAGTT-CGTTGT-AAT-----TAA-GA-------TATCAACTCGAAAAAAAA--T-TTGG----------------------------------------------------------------------GGGAA---T-CA----AATTAA--AGCTAACCACTCATGTTAG-ATCG-GCGCCGTTT-GAT------C-------A-C---------T--G---TATGTGC-CGT------GATAT-T-TAATGCCAATTTT-A-TGA-CAC--CCG-TGGAT-T--CACAT-C-ACCATGTACGGTATCCA-GCTTATTCT-TCA-GGTGA-TACGACTCCTGAGCCGTGTA-CC----AC----ACC-----ATAAGTTTTTT
gi|2 : ggaatatttaattttgtgttatattaaatttcgttactttcctgtttggaaaaaaataatgaaattaaatccaacacaaatttatgtttcagaaagtctttattttgatactagaaatctgtgtctttgTATTCATAGACTTTGTATA--G-A-TAG-CATATCT-TTCCAGTAC------CG-TAATCGAC-AC----------C-----------------ACTTTATTCCCTAAGAGTAGATGT--------------------ATTC------C-------CTCACAT-TGATG-TGT----TA-TGAA----TGGT-TG---C---TA-TCAAAACAGT-A---GTT-----CAC-AT----TTAGACACA--AACT-CGA-TATGGGT-G--TATCGTTTA-AAT-CAGT---GGTAC-AATCATTTTAA-GG-----TACATGTAC-----AAAT----------TC--------------G------AC----------A------------------------AAGA-C-G--GGGGATA-T-CA----GATTAC--AATTAACTCCTCACGT-AG-A-CA-GCGT-GTTTTGATG-TG-CC-------GCT---------G--GAAAAAAACCTACGTCCGTTCAAAAT-T-TA-TGTCATTTTT-----------GCTG-TGTAT-T--CAAATGC-ACCATGCA-AGTATCCACGCTC-TTCC-TCA-GACTA-TACGACCCCTGAACCGCATG-CA----AC----ACC-----AATAATTTGTTTTcacagtagattatgcatacgactgatgttccttttgtacggc
gi|6 : aacatatttaatttcgtgttggattaaatttccgcatattcgcgtctggaagaagacagcgatattaaatgaaaatatgtgtttctatTATCCGTATTCTATGTATT--ATA-TAA-TATATCT-CTCCAATAC------CA-T------A-ATGTATAGTATTC-----------------GTTAAGA---------------GT--------------------A--CAGGACCC-------CTCACAT-TGTTG-TGT----TA-AGAA----CGAT-TA---C---TG-TCAAAACAGT-AC-ATTTCAAAT----------TTCGACACT--TACT-CG-------------------CTA-AAA-AGGTT-CGATGT-AAT-----TAA-AAACGATTA------CTATCAAAACAG--TACTGATC---A---TT-TTGAT------AT----------A-------------C----------TA--------------G-T-T------AACAC--AGCAAA--GTTGAGGA-AG-ATCA-GCGC-GTTT-AAAG-TG-CC-------G-C---------T--GAGGCAAAATA-CATCCGTGCAAAAT-T-TGTTGTGA-TTTTTA-CGA-CAT--CCG-TGAAT-T--TTTATGC-ACC----A-AATA-----------TCT-TCA-GCCAA-TACTAATCCCGAGCCGCATATCA----TCT---AC-------TGAATTTGTTTTccccaatagatgcatacgactgatggtctttcgtacggctggtgtgtaaaatactgttcgtattcaaaagctatcttatagcgaccccaagaacatcagataaggctttgggcatcaactctgaatcaacaggtcattcttgacaaacggaatacaaaataatttaaacattttacatatacatgtaatgacacaagcgaacacggattaccggataataatttgttgtggtgt
gi|7 : tttcaaaaaaatatttatttcagtgttagaatcctgtgcctctgtTATTCGCTGTCCATTTATA--G-A-TAA-CATATTT-CGCCAGTGCAG----TGAT------C-AT----------C-----------------ACTATT----------------GT--------------------ATTC------CTTATGAGCAGAGTTGTGTTG--ATAAAATACAGAAGTACTGAGGTG---CAAATG-TAAGATCAAA-AC---TT----TCAT-TT----TAAAACCCT--AACT-CGA-CACAGTT-A---A--AATTG-AAA-AAATT-CATTGT-AAT-----TAA-GAATGAT------TACTATCAAAACAG--CACACATC---A---TT-TTAttagaatagaatatacaatttaccattaatcgaacggttttaagcagatgtgtatggctatg
gi|16 : aaaactgttagcagtgtcacttccttgtagagtgctatagaaaaaacatccattgaacacataaagcagtacacgtacattcaagatactgtagatgtatctaaatttcatgttggattaaattccattatttttgtgtctggggaaaaaacaatgaaactaattcctacataaattttcactttcagaaaatctttattctaatgttagaaatctctgtgtctcaatTATTCGTCGTGCATTTACA--T-A-TAA-CATATTT-CGCCAGTAC------TG-T------A-AT----------tatttaattcctaccaaatcagacaacaa
gi|26 : taaactgacgtcatatttcagtacacatatatggtttcgtgttggactttcgtgttttggatgaaacagcgaaatcaactccaacacggagttttaatttctgaaaatctttagaaatttatatctttgtTATTCGTAGTC-ATGTCTC--G-A-Ttgtcacaactgagtagatgtactatgcatgtgcacgcgtga
gi|1 : agaaaacaacgaaattaaatccaacacgagttttattttcaagaaatctttatttcagtgttagaaatgtgtgtttctgtATTCGACGTCCATTTATA--G-A-ATA-CATACTT-CGCCAGTAC------TG-C------A-ATTGTCTG----C-----------------ACT-------------------GTATTCCCTATGAGTAAATTTAA--C------C-------CGCACTT-TCATG-TGT----TA-A-------T-AT-TG---CA--TG-T----------AT-ATTT--GATTGA-T---------ATATTGCAAAA-T-A-CTCTGGT-G--TA--AATGA-CAA-AG-TT-CA-----AAG-----TAG-GAATGAT------TACTTTCAAATCAG--T-ACGGT--------TTATTAAA------AC----------G-------------C----------TAAC-T-T--GACAAGG-T-CGATGTGATTA
gi|17 : ggattatatttcgttattttcgtgtctgggagaaatcacagaaattaatcctacacgaatctttaatttttagatttttaaattctaatgctacataTTCGTAGTCCATGTCTC--G-AATAA-CGTATTTTCGCCAATAC------TG-T------C-AT----------C-----------------ATT-------------------GT--------------------A---------T-------AACGCAT-TGCTG-TAT----TA-AA-------------------------AAAACAGG-AC-AGT-----TCAT-AT----TTGGACAGT--AACA-CGA-CACGGGTGG--CA--AGTTATAAACGTGTT-CGGTAT-ataatgatttgtaccaaaacaggactgttcggtattataagttctcgacaaagccagggtcgacaaagccagggaaggttgggttacggctaactgctcgtgcagacagcgcgtgtgatttgactctgagatgaaactcatccgtgcaagatttaatgtcactttaagacaccgatacattccgatgcataagtatacaggtcatccggcacccaggccgcatagcacgccacgattggggtatcaagtcacctttaactggattagagtgttacatgtaaatagttggtttgctgcagattaataacatatttgtcctggtatgtcctgatatgtcgccatgaacatcgagcagggtgtgggcaacaatctttttttctacaagtctttgaaaatgctacctacacccggaatacaaaataattcgaaattataatgacgtggataaaagcaatgtgattaccctgcgtatacagatcaccgagcaataaattattgtggattaggtggtaataacagatacataaacggcgaatgtatagtaatg
gi|13 : agaaatatctttacttcgtgttagaaatgtgttgtctcttgttcTTCGTA-TCCATGTCTCTGA-A-TAAACGTATTTTCGCCAATAC------TG-T------CCATTT--------C-----------------ATTT------------------GT--------------------A--T------A-------CGCA--T-TGCTGCTAT----TA-AAAA-------------------------AACAGGGACAGGTT-----CAT-AT----TTGGACAGT--AACAACGATCACGGGT-G--GC--AGTTA-AAA-GTGTT-CGGTAT-tttggagaaattacgctggcaacaaaacaat
gi|3 : tattgtaagacgtatttaattttcgtttttggatttaaatttcgttgctttcgtgtctgaatagaaaacaacacgaaatgaaatccaacaagatgaaatatctttacttcagtgttagaaatgtgtgtctctgtttT-------------------GT--------------------A--C------C-------CACGATT-CGTGG-TGT----GA-AGAA----TGAT-TA---C---TA-TCAACACAAT-AC-AGT---GACCAT-AT----TTAGACACT--GATT-CGA-CACGGGT-G--CA--AGCTA-AAT-AGGTT-CGATGT-AAT-----TGA-AAATAA-TA-----ACTATCAAAACAGAAT--TGGCC---A---CT-TTAAG------ATAGTAACTCG-A-------------C----------AAAGTT-T--GGAAAGA-T-CG----GATTAC--AGCTAACAGCTCATGC-AG-A-GA-GAAC-GTTT-GATA-TG-CCGCTTAGTA-T---------A--GAAA-----CC-CATCCGTACAAGCT-T-CAATGTCAATTTGTA-TGG-CAC--CCA-AAGAT-C--CACATGC-ACTCTATG-GGTATCCA------------------------AACTCCTAAGCCGCATA-CC----AC----ACtt
gi|11 : atacaagaaactaaaaatacattactgtcgtactagattaaatttcgtaatgtttgcatcggaaaagaaacaccgaaattaaatccaaaacgaattttatttacaaaaactttttatttcaattttaaaaatatgtgtcccagttgttggtaataccggtatatgcttagataacacattttgcctgtgccgtaatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncttaaaagtagaT-------------------GT--------------------A--C------A-------CGCACTT-TG-----AT---------------TGAT-TA---C---TA-TCAAAGCA---------T--AA--AT-TTATAATTAGAAACT--AACT-CCA-TAGGGGT-GAAAA--AGTTC-AAA-AGGCC-CGATGT-AAT-----TAG-GAATGAT------TACTATCAAAACAGC-T-CAGGTC---A---AT-TTAAG------AC----------A-------------C----------TAAC-T-C--GACAAAA-T-CA----G---------------GGGCATGC-AT-A-CA-AAGC-GTTT-GATT-TG-CC-------G-C---------T--CAGAAAAAACC-TGTTCGTGC---------------------CA-TGA-TAC--CCG-TG----------ACGC-A--TTGTA-AGTATCGA---TT-TTAT-TCA-GGTGA-TACGACTTCTGAGTCACATA-CT----GC----AC-----------TTTATTTT
gi|22 : tccgtacgtaaattctacctcattatatcccttatgagtagaT-------------------GTG-------------------A--T------C-------CA-ACGT-TCTTG-TGT-----A-AGAA----TGGT-TACCCC---TATTCAAAACAAT-AC-AGT----GCCATGTT----TCGGACGCT--AACT-CGA-tc
gi|15 : ttatttgtaggtcctgtatagatatatttcacaacgtaccgtttaatcgactccattgtctatgtaagagtagAT----TC-AGAA----AAAT-TG---A---TA-TTAAAACAGC-ACGGGTT--A----T-TC----TTAAACACT--TACtcatgg
gi|1 : ----TA-GGAA----TGAT-TA---C---TT-TCAAATCAGT-AC-GGTT--TAT----------TAAAACGCT--AACT-TGA-CA---------------------A-GG--T-CGATGT-GAT-----TAA-TAATGATT---TGTAC---CAAAACAG--GACTGTTCGGTA---TT-ATAAGTTCTCGAC----------AAAGCCAGGGTCGAC----------AAAG-C-CA-GGGAAGG-T-TG----GGTTAC--GGCTAACTGCTCGTGC-AG-A-CA-GCGC-GTGT-GATT-TG-AC-------T-C---------T--GAGATGAAACT-CATCCGTGCAAGAT-T-TAATGTCA--CTTTA-AGA-C---ACCGATACAT-T--CCGATGC-A-----TA-AGTAT--A------------CA-GGTCA-TCCGGCACCCAGGCCGCATA-GC----AC----GCC-----ACGAtcaataaaatcgggggaaatcgtattacaactaactgatcatgaagacagagcgtttgatatgccgctgagatgaaacccgtccgcacaaatgggatttttatgacacccaaagattcacacatacaccctgtaagcatgcacgtccgtcttaggatgataagacccctgagctgcataccacaccatgagtttgtttttcacaata
gi|8 : ggattatatttcgttattttcgtgtctgggagaaatcacagaaattaatcctacacgaatctttaatttttagatttttaaattctaatgctacataattcgacgtccatttatagaatacatacttcgccagtactgcaattgtctgcactgtattccctatgagtaaatttaacccgcactttcatgtgttaatattgcatgtatatttgattgatatattgcaaaatactctggtgtaaatgacaaagttcaaagT----TTCGACACT--TACT-CGC-CACAGGT-A--CA--TGCTG-AAA-AGGTT-CGATGT-AAT-----TAA-GAATTATTA----------------------CTGACC---G---CT-TTAAG------AT----------A-------------CTAACTCAACAAAAT-C-G--GGGAAGA-T-CG----CATCAC--AGCTAACGGCTCATGC-AG-T-CA-GCGC-GTTT-GATG-TG-CC-------G-C---------GCTGAGGTAAAATC-CGTCCGTGCAAAATGTGTAGTG--ATTTTTTA-TGA-CAT--CCA-TGGAT-T--CCCCTGC-ACC----A-AGTA-----------TCT-TCA-GTCGA-TACGAATCTCGAGCCGCATA-TAT---ACATGTACCACTTAATGACTTTGTTTttggggtatcaagtcacctttaactggattagagtgttacatgtaaatagttggtttgctgcagattaataacatatttgtcctggtatgtcctgatatgtcgccatgaacatcgagcagggtgtgggcaacaatctttttttctacaagtctttgaaaatgctacctacacccggaatacaaaataattcgaaattataatgacgtggataaaagcaatgtgattaccctgcgtatacagatcaccgagcaataaattattgtggattaggtggtaataacagatacataaacggcgaatgtatagtaatg
gi|23 : attcaacgaaaattcatcttgctatcgtacgtagtaaattagcatacttcttggtacaacgtatcaacagacaagctgcatttgccctttgagatgtaggaaagaaagatgtgatcgcttaatcaatgggttgttgatgtattttaatatttctatctttgtgctattcaaaA-AAA-AGCTTACAATGTGAAT-----TAA-GAATGAT------TACTACGAAAATA---T-ATAGTC---A---TG-TCAAA------GCACTAAACTTGA-------------C----------AAAG-C-C---AGAATA-TACA----GATTAC--AACTATT--CTCATGC-AGCA-CACGTGC-ATTC-TATT-TGCCC-------A-C---------G--GA
gi|10 : aatgAT-----TAAAGAATAACT--------TATCAAAACAG--C-ATTGCC---AATATT-TAAAC------TC----------A-------------A----------AAAG-T-C--GGGAAAGAT-CG------TTATCAAGTTATATGTCCATAC-CG-A-CG-GCGC-GTTT-GATACTG-TC-------G-T---------T--GAG-TAAAACC-CGTCCGTGCA----------------TTTTTATTGACCAC--CCA-CCGATCT--CACATGCTACCATGTA-GGT-TCCACCGCT-GTCTGTCAGGGTGACCAAAAC-CCTAAGCTGCATA-
gi|15 : TATTAAAACAG--CACGGGTT---A---TT-CTTAA------AC----------A-------------CTTACTCAATAAAAT-C-G--GGGGAAA-T-CG----TATTAC--AACTAACTGATCATGA-AG-A-CA-GAGC-GTTT-GATA-TG-CC-------G-C---------T--GAGATGAAACC-CGTCC--GCACAA------ATGGGATTTT-TA-TGA-CAC--CCA-AAGAT-TCACACATAC-ACCCTGTA-AGCATGCACGTCC-GTCT-TAG-GATGA-TAAGACCCCTGAGCTGCATA-CC----AC----ACC-----ATGAGTTTGTTTTttgttcacaatgatcagtcttaccgttaaactgtacggtcacatgctacgtactgattctcgtacggaggaaggtgggggagggtgtttgtgttgtttaatgttgttcattagtatttgcaagatagattaaggaatgtttgtctcatgaacatcgagcagggcgttccacgggcatcaac
gi|5 : attcagaaaaattga------AC----------A-------------C----------AAAG-TGCTGGGGAATA-TACG----GATTAC--ACATAAGCGTACATAT-AC-A-TA-TCAC-ATTT-GGTA-TG-CC-------G-TTGCTTTATTA--GAAACTTATCCGTGTC---ACAATA-----AATGTTATCTTTAA--GG-CACCA--G-TAGAT-T--TACAAGC-ACTATGTA-AGTATCCATGCCC-TTC---CA--GTGA-CACGACATCTAAGCTGCATACCATACTAT----ACC-----ATATATTTATTTTtcacaata
gi|21 : tTGTA-ATTATGCACGTCC-ATCT-TCA-GGTGA-TATGACTCCTAGGCCGCATA-AC----AT----ACC-----ATGAATTTGTTTTcaatttatttacaccgtacagtcaaatgacggatgacgctcttccatacacactgaaaatcaaattgtttatagttgttttgttgcaggtcaaggaaatatttgtctgatgcgcctaatgaacatcgagtagggcatgggcatcagccttgtttctacaggtacctgctgattttgttgacagatggattacaataaaaataaaaaaaaaacatcattatgacttgggtaaaataatttaataaccaaagtgttgaccgattatcaaaaagtgatttgctttgtaatagatgataacatcggtgtgctaaattcatgaattgcgtgtgtatcgtaa
gi|19 : caGTGA-TACTATTCCTGAACCGCATA-CA----AC----ACC-----ATGAATTTGTTTTtcacaaaaaattaaatttacctttaaccgtgtatggtcaaatgcatatgactgatgtgcttttgtatggcggggggtggggatgggtgtgtgtgtgttaaaaattgtttgta
6 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|12 ): CACTGAGAGAAACCCATTTATGTCACATTCAATGTCATTTTTTGGAAAACCCGACAATATGTAAGAATCTACACCTCTATTCATGTGATACGACCTGGATTGCGTGCCTTTCAATTTACTTTTAACTGTAAGGTCACGTGGCTGCTGGTTTTCGTACAACTGGGGGAAGGGGAGTAAATAAATTGTTTTATGTCGCTATTTTGTAGCAAGTCGATGGAATCTGTCCTGGTGTGCCATTTGGACATTGAGCAAAGCGAAGGTGGGAGCTTTGTTTCCTTAGGTGCATTCAGTATCTTTGTGTGAATTTATTTGACAAACTGACTACCATAA
Unaligned ( gi|14 ): AAACATTTATTGGACTTATATTTCTGTCCTGTGAAATTAAGGTACATATATATGTAGATGTATCTAAATTTTTGTTAAATATATTATGTTCTTTTCATATCTATGTGAAAACAAAATCAAATCCAACAAGAATTTTTAAATTTCAGGAAATATTGTCACAGTTATTTCTGTTATTGGTAATCCATTTATTAGATAATATATTTTGTCAGTACCATACTGGTTGCTATGGTATTTCTTATGAGTAGATGTAACTTGTATTTTGTTGTGTTAAT
Unaligned ( gi|18 ): ATATTACGTACGAATAGTTAATTTCGTGTTGATTAAATACGTTTTTGCGTACTGGAGAAACGAGGAAACTAATACAATCGATGTTTACTTCTCATAATTTTGGTTTGTTTTATATGTTTCTGTTATCGTCGTCATTTATACATAACATAAATCCACCAGTGATGCGTAATGGTCGAATTGAATTTCTAATGAGTGATGTTCTG
Unaligned ( gi|20 ): AAATACTAAAAAAGTATCTAATATTGTGTTATATTATATTTCGTTATCTTGGTGTCTGTGAGAAAAGTAAATTCAATATAACACGAATTTCTTACTTAAAAAAACTTTAGTTTAACAAAATTTTAACTTTAAAAAATCTGTAATGTTAGAATCATGTGTCTGTTATTCTTCGTCCATTTATATAGCACATT
Unaligned ( gi|24 ): TACTGTAGATGTATTTAATTTCATGTTGGATTAAATATCATTATTTTCATGTTTGGGAGAAGACAACAAAATTAACACAAATTTATGATTTCAGAAATCTGTATTTTAATATTAGAAATCTGAA
Unaligned ( gi|25 ): AAAACAAGTGTAATGTAATTAAGAATGATTTTTTTAAAGATACGAACTCGGCAAAATACGGGAAGATATATTGATTACATGCTCTAAGTGTGGCTGATATGCCGCTGAGACGAAATCTG
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 44444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 222222222222222222222222222222 222222222222 2222222222 77777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 111 111 11111111 111111111 1 444444444444444
lowQualScore : 0 4 666 4 4 4 8 4 66666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 77 0 3 44 444444444444444444444444444444 3 888888888888 4 6666 1 3 6 0 88888888 33 33 2 4 2 2 9999999999 555 88888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 55 000 66666 44 1 222 44 3 6 3 3 3 77 555 11111111 44 3 3 222222222 44 5 3 3 44 0 3 44 0 1 3 7 3 1 444444444444444 44 3 3 3 2 2 77777 6666666666 77777 3
lowQualScore : . . ... . . . . . ................................................................................................................. .. . . .. .............................. . ............ . .... . . . . ........ .. .. . . . . .......... ... ......................................................................................... .. ... ..... .. . ... .. . . . . . .. ... ........ .. . . ......... .. . . . .. . . .. . . . . . . ............... .. . . . . . ..... .......... ..... .
lowQualScore : 8 0 555 0 0 0 0 0 66666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 22 8 6 66 222222222222222222222222222222 3 000000000000 0 1111 5 1 2 2 44444444 00 44 9 9 9 9 9999999999 000 00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 22 777 11111 22 4 222 55 1 2 1 1 1 11 222 55555555 22 3 3 666666666 11 7 3 3 66 7 3 66 4 0 3 8 1 5 000000000000000 22 1 1 2 9 1 11111 7777777777 77777 1
consensus : TATTCGTAG-TCCATGTATN--G-A-TAA-CATATTT-CGCCA-GTAC------CG-T------C--AT----------C-----------------ACT-------------------GT--------------------A--C------CC-------GCACNTTGTTG-TGTTAA--GAATG----AT-TAC---T----------------AT-CAAAACAGN-AC-GGTT--TCATATT-T-AGACACTAACT-CGA-CACGGGT-GCAA--GTTA-AAAAG-GTT-CGATGT-AATTAA-GAATGATT-----TACTATCAAA---ACAG--T-CTGGTC---A---TT-TTAAG------AC----------A-------------C----------AAAN-C-C--G----------GGAA-GAT---CG----GATTAC--AGCTAACTGCTCATGC-AG-A-CA-GCGC-G-TTTGATN-TGCCGCT--GAG-ATA----AAACC--CGT-CCGTG-CAAAAT-T-TAATGTCA-TTTTTA-TGA-CAC--CCGTGGAT-T--CACATGC-ACCATGTA-AGTATCCA-CG--C--C--T---C--T-TCA-GGTGA-TACGACTCCTGAGCCG-----CATAC-CA--C----ACC-----A-TGAATTTGTTTT
Reference ( family-78 ) : TATTCGTAG-TCCATGTATN--G-A-TAA-CATATTT-CGCCA-GTAC------TG-T------C--AT----------C-----------------ACT-------------------GT--------------------A--C------CC-------GCACNTTGTTG-TGTTAA--GAATG----AT-TAC---T----------------AT-CAAAACAGN-AC-GGTTA-TCATNTT-T-AGACACTAACT-CGA-CACGGGT-GCAA--GTTA-AAAAG-GTT-CGATGT-AATTAA-GAATGATT-----TACTATCAAA---ACAG--T-CTGGTC---A---TT-TTAAG------AC----------A-------------C----------AAAG-C-C--G----------GGAA-GAT---CG----GATTAC--AGCTAACCGCTCATGC-AG-A-CA-GCGC-G-TTTGATN-TGCCGCN--GAG-ATA----AAACC--CGT-CCGTG-CAAAAT-T-TAATGTCATTTTTTA-TGA-CAC--CCGTGGAT-T--CACATGC-ACCATGTA-AGTATCCA-CG--C--C--T---C--T-TCA-GGCGA-TACGACTCCTGAGCCG-----CATAC-NA--C----ACC-----A-TGAATTTGTTTT
gi|1 : ATTCGACG-TCCATTTATA--G-A-ATA-CATACTT-CGCCA-GTAC------TG-C------A--ATTGTCTG----C-----------------ACT-------------------GTATTCCCTATGAGTAAATTTAA--C------CC-------GCACTTTCATG-TGTTAA--TATTGC---ATGTA----T----------------AT-T----------T-GATTG-ATATATT-----GCA--AAAT---A-CTCTGGT-GTAA--ATGA-CAAA--GTT-CA-----AAGTAG-GAATGA-T-----TACTTTCAAA---TCAG--T-ACGGT--------TTATTAAA------AC----------G-------------C----------TAAC-T-T--G----------ACAA-GGT---CGATGTGATTA
gi|1 : ggattatatttcgttattttcgtgtctgggagaaatcacagaaattaatcctacacgaatctttaatttttagatttttaaattctaatgctacataTAG--GAATG----AT-TAC---T----------------TT-CAAATCAGT-AC-GGTT-----TATT-A-AAACGCTAACT-TGA-CA--------------------AG-GT--CGATGT-GATTAA-TAATGATT-----TG-TACCAAA---ACAG--GACTGTTCGGTA---TT-ATAAGTTCTCGAC----------AAAGCCAGGGTCGAC----------AAAG-C-CA-G----------GGAA-GGT---TG----GGTTAC--GGCTAACTGCTCGTGC-AG-A-CA-GCGC-G-TGTGATT-TGACTCT--GAG-ATG----AAACT--CAT-CCGTG-CAAGAT-T-TAATGTCA--CTTTA-AGA-CAC--CGATACAT-T--CCGATGC-A-----TA-AGTAT--A---------------------CA-GGTCA-TCCGGCACCCAGGCCG-----CATAG-CA--C----GCC-----A-CGAataatgatttgtaccaaaacaggactgttcggtattataagttctcgacaaagccagggtcgacaaagccagggaaggttgggttacggctaactgctcgtgcagacagcgcgtgtgatttgactctgagatgaaactcatccgtgcaagatttaatgtcactttaagacaccgatacattccgatgcataagtatacaggtcatccggcacccaggccgcatagcacgccacgattggggtatcaagtcacctttaactggattagagtgttacatgtaaatagttggtttgctgcagattaataacatatttgtcctggtatgtcctgatatgtcgccatgaacatcgagcagggtgtgggcaacaatctttttttctacaagtctttgaaaatgctacctacacccggaatacaaaataattcgaaattataatgacgtggataaaagcaatgtgattaccctgcgtatacagatcaccgagcaataaattattgtggattaggtggtaataacagatacataaacggcgaatgtatagtaatg
gi|10 : ggattatatttcgttattttcgtgtctgggagaaatcacagaaattaatcctacacgaatctttaatttttagatttttaaattctaatgctacataattcgacgtccatttatagaatacatacttcgccagtactgcaattgtctgcactgtattccctatgagtaaatttaacccgcactttcatgtgttaatattgcatgtatatttgattgatatattgcaaaatactctggtgtaaatgacaaagttcaaagATTAAAGAATAACT-----TA---TCAAA---ACAG--C-ATTGCC---AATATT-TAAAC------TC----------A-------------A----------AAAG-T-C--G----------GGAAAGAT---CG------TTATCAAGTTATATGTCCATAC-CG-A-CG-GCGC-G-TTTGATACTGTCGTT--GAG--TA----AAACC--CGT-CCGTG-CA----------------TTTTTATTGACCAC--CCACCGATCT--CACATGCTACCATGTA-GGT-TCCACCG--C--TG-T---C--TGTCAGGGTGACCAAAAC-CCTAAGCTG-----CATAT-TGTTC----ACA-----A-TGAttggggtatcaagtcacctttaactggattagagtgttacatgtaaatagttggtttgctgcagattaataacatatttgtcctggtatgtcctgatatgtcgccatgaacatcgagcagggtgtgggcaacaatctttttttctacaagtctttgaaaatgctacctacacccggaatacaaaataattcgaaattataatgacgtggataaaagcaatgtgattaccctgcgtatacagatcaccgagcaataaattattgtggattaggtggtaataacagatacataaacggcgaatgtatagtaatg
gi|11 : T-------------------GT--------------------A--C------AC-------GCACTTTGAT-------------TG----AT-TAC---T----------------AT-CAAAGCATA-A--ATTTA-TAAT----T-AGAAACTAACT-CCA-TAGGGGT-GAAAAAGTTC-AAAAG-GCC-CGATGT-AATTAG-GAATGA-T-----TACTATCAAA---ACAGC-T-CAGGTC---A---AT-TTAAG------AC----------A-------------C----------TAAC-T-C--G----------ACAA-AAT---CA----G---------------GGGCATGC-AT-A-CA-AAGC-G-TTTGATT-TGCCGCT--CAG-AAA----AAACC--TGT-TCGTG-C---------------------CA-TGA-TAC--CCGTGA------CGCAT-------TGTA-AGTATCGA-T---T--T--T---A--T-TCA-GGTGA-TACGACTTCTGAGTCA-----CATAC-TG--C----AC------------TTTATTTTtcagtcttaccgttaaactgtacggtcacatgctacgtactgattctcgtacggaggaaggtgggggagggtgtttgtgttgtttaatgttgttcattagtatttgcaagatagattaaggaatgtttgtctcatgaacatcgagcagggcgttccacgggcatcaac
gi|12 : tccgtacgtaaattctacctcattatatcccttatgagtagaCACT--GAG-A-G----AAACC--CAT-TTATG-TCACAT-T-CAATGTCATTTTTTG-GAA-AAC--CCG--------------AC-AATATGTA-AGAATCTA-CA--C--C--T---CTAT-TCA-TGTGA-TACGA--CCTGGATTG-----CGTGC-----------CT-----T-TCAATTTACTTTtc
gi|13 : TTCGTA--TCCATGTCTCTGA-A-TAAACGTATTTTCGCCA-ATAC------TG-T------CC-ATTT--------C-----------------ATTT------------------GT--------------------A--T------AC-------GCA--TTGCTGCTATTAA--AAA--------------------------------------AACAGGGACAGGTT---CATATT-T-GGACAGTAACAACGATCACGGGT-GGCA--GTTA-AAAGT-GTT-CGGTAT-taactgtaaggtcacgtggctgctggttttcgtacaactgggggaaggggagtaaataaattgttttatgtcgctattttgtagcaagtcgatggaatctgtcctggtgtgccatttggacattgagcaaagcgaaggtgggagctttgtttccttaggtgcattcagtatctttgtgtgaatttatttgacaaactgactaccataa
gi|15 : tattgtaagacgtatttaattttcgtttttggatttaaatttcgttgctttcgtgtctgaatagaaaacaacacgaaatgaaatccaacaagatgaaatatctttacttcagtgttagaaatgtgtgtctctgtttATTCA-GAAAAATT-----GA-TATTAAA---ACAG--CACGGGTT---A---TT-CTTAA------AC----------A-------------CTTACTCAATAAAAT-C-G--G----------GGGA-AAT---CG----TATTAC--AACTAACTGATCATGA-AG-A-CA-GAGC-G-TTTGATA-TGCCGCT--GAG-ATG----AAACC--CGT-CCGCA-CA--------AATGGGA-TTTTTA-TGA-CAC--CCAAAGAT-TCACACATAC-ACCCTGTA-AGCATGCA-CG--T--CCGT---C--T-TAG-GATGA-TAAGACCCCTGAGCTG-----CATAC-CA--C----ACC-----A-TGAGTTTGTTTTtt
gi|16 : TATTCGTCG-TGCATTTACA--T-A-TAA-CATATTT-CGCCA-GTAC------TG-T------A--AT----------tcacaata
gi|17 : taaactgacgtcatatttcagtacacatatatggtttcgtgttggactttcgtgttttggatgaaacagcgaaatcaactccaacacggagttttaatttctgaaaatctttagaaatttatatctttgtTTCGTAG-TCCATGTCTC--G-AATAA-CGTATTTTCGCCA-ATAC------TG-T------C--AT----------C-----------------ATT-------------------GT--------------------A--TA-----AC-------GCA--TTGCTG-TATTAA--A--------------------------------------AAAACAGG-AC-AGT---TCATATT-T-GGACAGTAACA-CGA-CACGGGTGGCAA--GTTATAAACGTGTT-CGGTAT-tgtcacaactgagtagatgtactatgcatgtgcacgcgtga
gi|19 : agaaatatctttacttcgtgttagaaatgtgttgtctcttgttcGTGA-TACTATTCCTGAACCG-----CATAC-AA--C----ACC-----A-TGAATTTGTTTTtttggagaaattacgctggcaacaaaacaat
gi|2 : atTATTCATAG-ACTTTGTATA--G-A-TAG-CATATCT-TTCCA-GTAC------CG-TAATCGAC--AC----------C-----------------ACTTTATTCCCTAAGAGTAGATGT--------------------ATTC------CC-------TCACATTGATG-TGTTAT--GAATG----GT-TGC---T----------------AT-CAAAACAGT-A---GT---TCACATT-T-AGACACAAACT-CGA-TATGGGT-GTA----------------T-CG-TTT-AAATCA-G--TGGT-------------------ACAA--T-C--------A---TT-TTAAGGT----ACATGT------A-------------C----------AAAT-T-C--GACAAAGACGGGGGA-TAT---CA----GATTAC--AATTAACTCCTCACGT-AG-A-CA-GCGT-GTTTTGATG-TGCCGCT--GGA-AAA----AAACCTACGT-CCGTT-CAAAAT-T-T-ATGTCATTTT----TG-------CTGTGTAT-T--CAAATGC-ACCATGCA-AGTATCCA-CGCTC--T--T---C--C-TCA-GACTA-TACGACCCCTGAACCG-----CATGC-AA--C----ACC-----A-ATAATTTGTTTTtcacaatgtatttcaatttactgttaatcgtgcggtcaaataaacaagttgaacgttataacgtcataattacaaagcacgcgtgacgttgcgctacacgtaaacaataacgcgccaaataaataaacaattcttacacatatatctaactg
gi|21 : aacatatttaatttcgtgttggattaaatttccgcatattcgcgtctggaagaagacagcgatattaaatgaaaatatgtgtttctatCATGTA-ATTATGCA-CG--T--CCAT---C--T-TCA-GGTGA-TATGACTCCTAGGCCG-----CATAA-CA--T----ACC-----A-TGAATTTGTTTTccccaatagatgcatacgactgatggtctttcgtacggctggtgtgtaaaatactgttcgtattcaaaagctatcttatagcgaccccaagaacatcagataaggctttgggcatcaactctgaatcaacaggtcattcttgacaaacggaatacaaaataatttaaacattttacatatacatgtaatgacacaagcgaacacggattaccggataataatttgttgtggtgt
gi|22 : TATTTGTAGGTCC-TGTATA--G-A-TA----TATTT-CACAACGTAC------CG-T------TTAAT----------CGACTCC-----------ATT-------------------GTCTATGTAAGAGTAGTGTG--A--T------CC-------A-ACGTTCTTG-TGT-AA--GAATG----GT-TACCCCT----------------ATTCAAAACAAT-AC-AGT-G-CCATGTT-TCGGACGCTAACT-CGATCATGGtcacaaaaaattaaatttacctttaaccgtgtatggtcaaatgcatatgactgatgtgcttttgtatggcggggggtggggatgggtgtgtgtgtgttaaaaattgtttgta
gi|23 : tA-AAAAG-CTTACAATGTGAATTAA-GAATGA-T-----TACTACGAAA---ATA---T-ATAGTC---A---TG-TCAAA------GCACTAAACTTGA-------------C----------AAAG-C-C-------------AGAA-TATA--CA----GATTAC--AACTA--TTCTCATGC-AGCA-CACGTGC-A-TTCTATT-TGCC
gi|25 : aatgA-AACAA-GTG-TAATGT-AATTAA-GAATGATT-----T--TTTTAAAGATACGA--A-CTCGGC---A------------------------------------------------------AAAT-A-C--G----------GGAA-GATATATT----GATTAC--A------TGCTC-TA--------A-GTGT-G-GCTGATA-TGCCGCT--GAG-ACG----AAATC--TGcacgga
gi|3 : aT-------------------GT--------------------A--C------CC-------ACGATTCGTGG-TGTGAA--GAATG----AT-TAC---T----------------AT-CAACACAAT-AC-AGTGA-CCATATT-T-AGACACTGATT-CGA-CACGGGT-GCAA--GCTA-AATAG-GTT-CGATGT-AATTGA-AAATAA-T-----AACTATCAAA---ACAGAAT--TGGCC---A---CT-TTAAG------ATAGTAACTCG-A-------------C----------AAAGTT-T--G----------GAAA-GAT---CG----GATTAC--AGCTAACAGCTCATGC-AG-A-GA-GAAC-G-TTTGATA-TGCCGCT--TAGTATAG---AAACC--CAT-CCGTA-CAAGCT-T-CAATGTCAATTTGTA-TGG-CAC--CCAAAGAT-C--CACATGC-ACTCTATG-GGTATCCA---------------------------------AACTCCTAAGCCG-----CATAC-CA--C----AC
gi|4 : atacaagaaactaaaaatacattactgtcgtactagattaaatttcgtaatgtttgcatcggaaaagaaacaccgaaattaaatccaaaacgaattttatttacaaaaactttttatttcaattttaaaaatatgtgtcccagttgttggtaataccggtatatgcttagataacacattttgcctgtgccgtaatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncttaaaagtagaTATTCGTCG-TCCGTGTATT--G-A-TAA-CATATTT-CGCCA-GTGCGGTAATTG-T------C--AT----------CTTTATTCCTTAGGAGTAAAT-------------------GT--------------------A--C------CC-------CAACTTTGTTG-CGTTGA--GAATG----AA-TAC---T----------------AC-CAAAACAGA-AC-AATT---CATTCAAT-AAACA--AACT-CCA-CACGGAT-GCAA--ATTT-AAAAA-GTT-CGTTGT-AATTAA-GA--------------TATCAA------------CTCG--------------AAA------A-----------A------------------------AAAT-T-T--G----------GGGG-AAT---CA----AATTAA--AGCTAACCACTCATGTTAG-ATCG-GCGCCG-TTTGAT-----CACT--G----TA-----------TGTGCCGTG---ATAT-T-TAATGCCAATTTT-A-TGA-CAC--CCGTGGAT-T--CACAT-C-ACCATGTACGGTATCCA--G--C--T--TATTC--T-TCA-GGTGA-TACGACTCCTGAGCCG-----TGTAC-CA--C----ACC-----A-TAAGTTTTTT
gi|5 : ggaatatttaattttgtgttatattaaatttcgttactttcctgtttggaaaaaaataatgaaattaaatccaacacaaatttatgtttcagaaagtctttattttgatactagaaatctgtgtctttg------AC----------A-------------C----------AAAG-TGCTGG----------GGAA-TATA--CG----GATTAC--ACATAAGCGTACATAT-AC-A-TA-TCAC-A-TTTGGTA-TGCCGTT--GCT-TTATTAGAAACT--TAT-CCGTGTCACAA--T-AAATGTTA-TCTTTA-AGG-CAC--CAGTAGAT-T--TACAAGC-ACTATGTA-AGTATCCA-TG--C--C------C--T-TCC-AGTGA-CACGACATCTAAGCTGCATACCATAC-TA--T----ACC-----A-TATATTTATTTTcacagtagattatgcatacgactgatgttccttttgtacggc
gi|6 : tTATCCGTAT-TCTATGTATT--ATA-TAA-TATATCT-CTCCA-ATAC------CA-T------A--ATGTATAGTATTC-----------------GTTAAGA---------------GT--------------------A--CAGGACCCC-------TCACATTGTTG-TGTTAA--GAACG----AT-TAC---T----------------GT-CAAAACAGT-AC-A-TT--TCAAATT-T-CGACACTTACT-CG-----------------CTA-AAAAG-GTT-CGATGT-AATTAA-AAACGATT------ACTATCAAA---ACAG--TACTGATC---A---TT-TTGAT------AT----------A-------------C----------TA--------G----------TTAA----------------CAC--AGCAAA--GTTGAGGA-AG-ATCA-GCGC-G-TTTAAAG-TGCCGCT--GAG-GCA----AAATA--CAT-CCGTG-CAAAAT-T-TGTTGTGA-TTTTTA-CGA-CAT--CCGTGAAT-T--TTTATGC-ACC----A-AATA---------------T---C--T-TCA-GCCAA-TACTAATCCCGAGCCG-----CATAT-CA--T-----CT-----ACTGAATTTGTTTTcaatttatttacaccgtacagtcaaatgacggatgacgctcttccatacacactgaaaatcaaattgtttatagttgttttgttgcaggtcaaggaaatatttgtctgatgcgcctaatgaacatcgagtagggcatgggcatcagccttgtttctacaggtacctgctgattttgttgacagatggattacaataaaaataaaaaaaaaacatcattatgacttgggtaaaataatttaataaccaaagtgttgaccgattatcaaaaagtgatttgctttgtaatagatgataacatcggtgtgctaaattcatgaattgcgtgtgtatcgtaa
gi|7 : tttcaaaaaaatatttatttcagtgttagaatcctgtgcctctgtTATTCGCTG-TCCATTTATA--G-A-TAA-CATATTT-CGCCA-GTGCAG----TGAT------C--AT----------C-----------------ACTATT----------------GT--------------------A--T------TCCTTATGAGCAGA--GTTG-TGTTGATAAAATACAGAAG-TAC---TGAGGTGCAAATGTAAGAT-CAAAAC---------TT--TCATTTT-A-AAACCCTAACT-CGA-CACAGTT-A-AA--ATTG-AAAAA-ATT-CATTGT-AATTAA-GAATGA-T-----TACTATCAAA---ACAG--CACACATC---A---TT-TTAttagaatagaatatacaatttaccattaatcgaacggttttaagcagatgtgtatggctatg
gi|8 : aaaactgttagcagtgtcacttccttgtagagtgctatagaaaaaacatccattgaacacataaagcagtacacgtacattcaagatactgtagatgtatctaaatttcatgttggattaaattccattatttttgtgtctggggaaaaaacaatgaaactaattcctacataaattttcactttcagaaaatctttattctaatgttagaaatctctgtgtctcaat-TCAAATT-T-CGACACTTACT-CGC-CACAGGT-ACAT--GCTG-AAAAG-GTT-CGATGT-AATTAA-GAAT------------TATTA-------------CTGACC---G---CT-TTAAG------AT----------A-------------CTAACTCAACAAAAT-C-G--G----------GGAA-GAT---CG----CATCAC--AGCTAACGGCTCATGC-AG-T-CA-GCGC-G-TTTGATG-TGCCGCGCTGAG-GTA----AAATC--CGT-CCGTG-CAAAATGTGTAGTG--ATTTTTTA-TGA-CAT--CCATGGAT-T--CCCCTGC-ACC----A-AGTA---------------T---C--T-TCA-GTCGA-TACGAATCTCGAGCCG-----CATATATA--CATGTACCACTTAA-TGACTTTGTTTtatttaattcctaccaaatcagacaacaa
gi|9 : attcaacgaaaattcatcttgctatcgtacgtagtaaattagcatacttcttggtacaacgtatcaacagacaagctgcatttgccctttgagatgtaggaaagaaagatgtgatcgcttaatcaatgggttgttgatgtattttaatatttctatctttgtgctatTATTCGTAG-TCCATGTCTC--G-A-TAA-CATATTT-CACCA-ATAC------TG-T------C--AT----------C-----------------ACT-------------------GT--------------------A--C------CC-------ACACTTTGTTG-TATTAA--GAATG----AT-TGC---T----------------GT-CAAAACAGG-AC-GGTTAATCGTTTT-T-GGACACTAACA-CGA-CACAGGT-GCAA--GTTA-AAAGG-GTT-CGGTGT-AATTAA-GAATGATTATATGTACTATCAAA---ACAG--T-CTGGTC---A---TT-TTAAG------AC----------A-------------C----------AAAG-C-C--G----------GGAA-GGT---CG----GATTAC--AGCTATCTGCTCATGC-AG-A-CA-GTGC-G-TTTGATG-TGCCATG--GAG-ACA----TACCC--CGT-CCCTG-CAAAAT-T-TAATGTCATTTTTTA-TGA-CACTACCGTGGAT-T--CACATGC-ACCCTGTA-AGTATCCA-CA--CTTT--T---C--T-TCA-GGTGA-TATGACTCCTGAGCCG-----CATAC-AA--C----ACC-----A-TGAATTTGTTTT
5 sequences could not be aligned to this reference sequence:
Unaligned ( gi|14 ): AAACATTTATTGGACTTATATTTCTGTCCTGTGAAATTAAGGTACATATATATGTAGATGTATCTAAATTTTTGTTAAATATATTATGTTCTTTTCATATCTATGTGAAAACAAAATCAAATCCAACAAGAATTTTTAAATTTCAGGAAATATTGTCACAGTTATTTCTGTTATTGGTAATCCATTTATTAGATAATATATTTTGTCAGTACCATACTGGTTGCTATGGTATTTCTTATGAGTAGATGTAACTTGTATTTTGTTGTGTTAAT
Unaligned ( gi|18 ): ATATTACGTACGAATAGTTAATTTCGTGTTGATTAAATACGTTTTTGCGTACTGGAGAAACGAGGAAACTAATACAATCGATGTTTACTTCTCATAATTTTGGTTTGTTTTATATGTTTCTGTTATCGTCGTCATTTATACATAACATAAATCCACCAGTGATGCGTAATGGTCGAATTGAATTTCTAATGAGTGATGTTCTG
Unaligned ( gi|20 ): AAATACTAAAAAAGTATCTAATATTGTGTTATATTATATTTCGTTATCTTGGTGTCTGTGAGAAAAGTAAATTCAATATAACACGAATTTCTTACTTAAAAAAACTTTAGTTTAACAAAATTTTAACTTTAAAAAATCTGTAATGTTAGAATCATGTGTCTGTTATTCTTCGTCCATTTATATAGCACATT
Unaligned ( gi|24 ): TACTGTAGATGTATTTAATTTCATGTTGGATTAAATATCATTATTTTCATGTTTGGGAGAAGACAACAAAATTAACACAAATTTATGATTTCAGAAATCTGTATTTTAATATTAGAAATCTGAA
Unaligned ( gi|26 ): AGAAAACAACGAAATTAAATCCAACACGAGTTTTATTTTCAAGAAATCTTTATTTCAGTGTTAGAAATGTGTGTTTCTGTTATTCGTAGTCATGTCTCGAT
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 44444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 222222222222222222222222222222 111111111111 2222222222 77777777777777777777777777777777777777777777777777777777777777777777777777777777777777 111 11111111 111111111111 444444444444444 1111111111
lowQualScore : 3 888 3 3 3 6 3 9999999 77777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 77 0 3 44 0 444444444444444444444444444444 3 444444444444 555 44 1 3 6 0 88888888 33 33 2 4 2 2 9999999999 555 99999999999999999999999999999999999999999999999999999999999999999999999999999999999999 55 000 66666 44 1 666 3 3 6 3 3 3 77 33 11111111 44 3 444444444444 555 6 44 44 3 44 0 3 44 0 1 3 7 3 1 444444444444444 44 3 3 2 2 2222222222 77777 44 3
lowQualScore : . ... . . . . . ....... ........................................................................................................ .. . . .. . .............................. . ............ ... .. . . . . ........ .. .. . . . . .......... ... ...................................................................................... .. ... ..... .. . ... . . . . . . .. .. ........ .. . ............ ... . .. .. . .. . . .. . . . . . . ............... .. . . . . .......... ..... .. .
lowQualScore : 6 999 3 3 3 7 3 7777777 22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 22 8 6 66 4 222222222222222222222222222222 3 333333333333 444 44 5 1 2 2 44444444 00 44 9 9 9 9 9999999999 000 88888888888888888888888888888888888888888888888888888888888888888888888888888888888888 22 777 11111 22 4 888 1 1 2 1 1 1 11 99 55555555 22 3 666666666666 333 7 00 66 3 66 7 3 66 4 0 3 8 1 5 000000000000000 22 1 1 9 1 5555555555 11111 22 3
consensus : TATTCGTAG-TCCATGTATN--G-A-TAA-CATATTT-CGCCA-GTAC------CGT------C--AT----------C-----------------ACT-------------------GT--------------------A--C------C-C-------GCACNTTGTTG-TGTTAA--GAATG----AT-TAC---T----------------AT-CAAAACAGN-ACGGTT--TCATATT---T-AGACACTAACT-CGA-CACGGGT-GCAA--GTTA-AAAAG-GTT-CGATGT-AATTAA-GAATGATT-----TACTATCAAA---ACAG--T-CTGGTC---A---TT-TTAAG------AC----------A-------------C----------AAA-NT-C----------GGGAA-GAT---CG----GATTAC--AGCTAACTGCTCATGC-AG-A-CA-GCGC-G-TTTGATN-TGC--CGCTGAG-ATA----AAACC--CGT-CCGTG-CAAAAT-T-TAATGTC-A-TTTTTA-TG--A-CAC--CCGTGGAT-T--CACATGC-ACCATGTA-AGTATCCA-CG--C--C--T---C--T-TCA-GGTGA-TACGACTCCTGAGCCGCA----------TACC-----A--CACCA-TGAATTTGTTTT
Reference ( family-78 ) : TATTCGTAG-TCCATGTATN--G-A-TAA-CATATTT-CGCCA-GTAC------CGT------C--AT----------C-----------------ACT-------------------GT--------------------A--C------C-C-------GCACNTTGTTG-TGTTAA--GAATG----AT-TAC---T----------------AT-CAAAACAGN-ACGGTT--TCATATT---T-AGACACTAACT-CGA-CACGGGT-GCAA--GTTA-AAAAG-GTT-CGATGT-AATTAA-GAATGATT-----TACTATCAAA---ACAG--T-CTGGTC---A---TT-TTAAG------AC----------A-------------C----------AAA-NC-C----------GGGAA-GAT---CG----GATTAC--AGCTAACTGCTCATGC-AG-A-CA-GCGC-G-TTTGATN-TGC--CGCTGAG-ATA----AAACC--CGT-CCGTG-CAAAAT-T-TAATGTC-A-TTTTTA-TG--A-CAC--CCGTGGAT-T--CACATGC-ACCATGTA-AGTATCCA-CG--C--C--T---C--T-TCA-GGTGA-TACGACTCCTGAGCCGCA----------TACC-----A--CACCA-TGAATTTGTTTT
gi|1 : ATTCGACG-TCCATTTATA--G-A-ATA-CATACTT-CGCCA-GTAC------TGC------A--ATTGTCTG----C-----------------ACT-------------------GTATTCCCTATGAGTAAATTTAA--C------C-C-------GCACTTTCATG-TGTTAA--TATTGC---ATGTA----T----------------AT-TTGA-----------T--TGATATA---T-TG-CA--AAAT---A-CTCTGGT-GTAA--ATGA-CAAA--GTT-CA-----AAGTAG-GAATGA-T-----TACTTTCAAA---TCAG--T-ACGGT--------TTATTAAA------AC----------G-------------C----------TAA-CT-T----------GACAA-GGT---CGATGTGATTA
gi|1 : ggattatatttcgttattttcgtgtctgggagaaatcacagaaattaatcctacacgaatctttaatttttagatttttaaattctaatgctacataTAG--GAATG----AT-TAC---T----------------TT-CAAATCAGT-ACGGTT--T---ATT---A-AAACGCTAACT-TGA-CA--------------------AG-GT--CGATGT-GATTAA-TAATGATT-----TG-TACCAAA---ACAG--GACTGTTCGGTA---TT-ATAAGTTCTCGAC----------AAAGCCAGGGTCGAC----------AAA-GC-CA---------GGGAA-GGT---TG----GGTTAC--GGCTAACTGCTCGTGC-AG-A-CA-GCGC-G-TGTGATT-TGA--CTCTGAG-ATG----AAACT--CAT-CCGTG-CAAGAT-T-TAATGTC-A--CTTTA-AG--A-CAC--CGATACAT-T--CCGATGC-A-----TA-AGTAT--A---------------------CA-GGTCA-TCCGGCACCCAGGCCGCA----------TAGC-----A--CGCCA-CGAataatgatttgtaccaaaacaggactgttcggtattataagttctcgacaaagccagggtcgacaaagccagggaaggttgggttacggctaactgctcgtgcagacagcgcgtgtgatttgactctgagatgaaactcatccgtgcaagatttaatgtcactttaagacaccgatacattccgatgcataagtatacaggtcatccggcacccaggccgcatagcacgccacgattggggtatcaagtcacctttaactggattagagtgttacatgtaaatagttggtttgctgcagattaataacatatttgtcctggtatgtcctgatatgtcgccatgaacatcgagcagggtgtgggcaacaatctttttttctacaagtctttgaaaatgctacctacacccggaatacaaaataattcgaaattataatgacgtggataaaagcaatgtgattaccctgcgtatacagatcaccgagcaataaattattgtggattaggtggtaataacagatacataaacggcgaatgtatagtaatg
gi|10 : ggattatatttcgttattttcgtgtctgggagaaatcacagaaattaatcctacacgaatctttaatttttagatttttaaattctaatgctacataattcgacgtccatttatagaatacatacttcgccagtactgcaattgtctgcactgtattccctatgagtaaatttaacccgcactttcatgtgttaatattgcatgtatatttgattgatatattgcaaaatactctggtgtaaatgacaaagttcaaagATTAAAGAATAACT-----TA---TCAAA---ACAG--C-ATTGCC---AATATT-TAAAC------TC----------A-------------A----------AAA-GT-C----------GGGAAAGAT---CG------TTATCAAGTTATATGTCCATAC-CG-A-CG-GCGC-G-TTTGATACTGT--CGTTGAG--TA----AAACC--CGT-CCGTG----------------C-A-TTTTTATTG--ACCAC--CCACCGATCT--CACATGCTACCATGTA-GGT-TCCACCG--C--TG-T---C--TGTCAGGGTGACCAAAAC-CCTAAGCTGCA----------TATT-----GTTCACAA-TGAttggggtatcaagtcacctttaactggattagagtgttacatgtaaatagttggtttgctgcagattaataacatatttgtcctggtatgtcctgatatgtcgccatgaacatcgagcagggtgtgggcaacaatctttttttctacaagtctttgaaaatgctacctacacccggaatacaaaataattcgaaattataatgacgtggataaaagcaatgtgattaccctgcgtatacagatcaccgagcaataaattattgtggattaggtggtaataacagatacataaacggcgaatgtatagtaatg
gi|11 : T-------------------GT--------------------A--C------A-C-------GCACTTTGAT-------------TG----AT-TAC---T----------------AT-CAAAGCATA-A--ATT--T-ATAAT---T-AGAAACTAACT-CCA-TAGGGGT-GAAAAAGTTC-AAAAG-GCC-CGATGT-AATTAG-GAATGA-T-----TACTATCAAA---ACAGC-T-CAGGTC---A---AT-TTAAG------AC----------A-------------C----------TAA-CT-C----------GACAA-AAT---CA----G---------------GGGCATGC-AT-A-CA-AAGC-G-TTTGATT-TGC--CGCTCAG-AAA----AAACC--TGT-TCGTG-C----------------------CA-TG--A-TAC--CCGTGA------CGCAT-------TGTA-AGTATCGA-T---T--T--T---A--T-TCA-GGTGA-TACGACTTCTGAGTCACA----------TACT-----G--CAC-------TTTATTTTtcagtcttaccgttaaactgtacggtcacatgctacgtactgattctcgtacggaggaaggtgggggagggtgtttgtgttgtttaatgttgttcattagtatttgcaagatagattaaggaatgtttgtctcatgaacatcgagcagggcgttccacgggcatcaac
gi|12 : tccgtacgtaaattctacctcattatatcccttatgagtaga--CACTGAG-A-G----AAACC--CAT-TTATG-TCACAT-T-CAATGTC-A-TTTTT--TGGAA-AAC--CCG--------------AC-AATATGTA-AGAATCTA-CA--C--C--T---CTAT-TCA-TGTGA-TACGA--CCTGGATTGCG----------TGCC-----tc
gi|13 : TTCGTA--TCCATGTCTCTGA-A-TAAACGTATTTTCGCCA-ATAC------TGT------CC-ATTT--------C-----------------ATTT------------------GT--------------------A--T------A-C-------GCA--TTGCTGCTATTAA--AAA--------------------------------------AACAGGGACAGGT--TCATATT---T-GGACAGTAACAACGATCACGGGT-GGCA--GTTA-AAAGT-GTT-CGGTAT-tttcaatttacttttaactgtaaggtcacgtggctgctggttttcgtacaactgggggaaggggagtaaataaattgttttatgtcgctattttgtagcaagtcgatggaatctgtcctggtgtgccatttggacattgagcaaagcgaaggtgggagctttgtttccttaggtgcattcagtatctttgtgtgaatttatttgacaaactgactaccataa
gi|14 : tattgtaagacgtatttaattttcgtttttggatttaaatttcgttgctttcgtgtctgaatagaaaacaacacgaaatgaaatccaacaagatgaaatatctttacttcagtgttagaaatgtgtgtctctgtttTATTGGTAA-TCCATTTATTA-G-A-TAA-TATATTT-TGTCA-GTAC------CAT------tt
gi|15 : aaacatttattggacttatatttctgtcctgtgaaattaaggtacatatatatgtagatgtatctaaatttttgttaaatatattatgttcttttcatatctatgtgaaaacaaaatcaaatccaacaagaatttttaaatttcaggaaatattgtcacagttatttctgtATTCA-GAAAAATT-----GA-TATTAAA---ACAG--CACGGGTT---A---TT-CTTAA------AC----------A-------------CTTACTCAATAAAA-TC-G----------GGGGA-AAT---CG----TATTAC--AACTAACTGATCATGA-AG-A-CA-GAGC-G-TTTGATA-TGC--CGCTGAG-ATG----AAACC--CGT-CCGCA-CA--------AATGGG-A-TTTTTA-TG--A-CAC--CCAAAGAT-TCACACATAC-ACCCTGTA-AGCATGCA-CG--T--CCGT---C--T-TAG-GATGA-TAAGACCCCTGAGCTGCA----------TACC-----A--CACCA-TGAGTTTGTTTTactggttgctatggtatttcttatgagtagatgtaacttgtattttgttgtgttaat
gi|16 : TATTCGTCG-TGCATTTACA--T-A-TAA-CATATTT-CGCCA-GTAC------TGT------A--AT----------tcacaata
gi|17 : taaactgacgtcatatttcagtacacatatatggtttcgtgttggactttcgtgttttggatgaaacagcgaaatcaactccaacacggagttttaatttctgaaaatctttagaaatttatatctttgtTTCGTAG-TCCATGTCTC--G-AATAA-CGTATTTTCGCCA-ATAC------TGT------C--AT----------C-----------------ATT-------------------GT--------------------A--T------AAC-------GCA--TTGCTG-TATTAA--AAA--------------------------------------AACAGG-ACAGTT---CATATT---T-GGACAGTAACA-CGA-CACGGGTGGCAA--GTTATAAACGTGTT-CGGTAT-tgtcacaactgagtagatgtactatgcatgtgcacgcgtga
gi|19 : agaaatatctttacttcgtgttagaaatgtgttgtctcttgttcGTGA-TACTATTCCTGAACCGCA----------TACA-----A--CACCA-TGAATTTGTTTTtttggagaaattacgctggcaacaaaacaat
gi|2 : atTATTCATAG-ACTTTGTATA--G-A-TAG-CATATCT-TTCCA-GTAC------CGTAATCGAC--AC----------C-----------------ACTTTATTCCCTAAGAGTAGATGT--------------------ATTC------C-C-------TCACATTGATG-TGTTAT--GAATG----GT-TGC---T----------------AT-CAAAACAGT-A-G--T--TCACATT---T-AGACACAAACT-CGA-TATGGGT-GTA----------------T-CG-TTT-AAATCA-G--TGGT-------------------ACAA--T-C--------A---TT-TTAAGGT----ACATGT------A-------------C----------AAA-TT-CGACAAAGACGGGGGA-TAT---CA----GATTAC--AATTAACTCCTCACGT-AG-A-CA-GCGT-GTTTTGATG-TGC--CGCTGGA-AAA----AAACCTACGT-CCGTT-CAAAAT-T-T-ATGTC-A-TTTTTG------------CTGTGTAT-T--CAAATGC-ACCATGCA-AGTATCCA-CGCTC--T--T---C--C-TCA-GACTA-TACGACCCCTGAACCGCA----------TGCA-----A--CACCA-ATAATTTGTTTTtcacaatgtatttcaatttactgttaatcgtgcggtcaaataaacaagttgaacgttataacgtcataattacaaagcacgcgtgacgttgcgctacacgtaaacaataacgcgccaaataaataaacaattcttacacatatatctaactg
gi|21 : aacatatttaatttcgtgttggattaaatttccgcatattcgcgtctggaagaagacagcgatattaaatgaaaatatgtgtttctatCATGTA-ATTATGCA-CG--T--CCAT---C--T-TCA-GGTGA-TATGACTCCTAGGCCGCA----------TAAC-----A--TACCA-TGAATTTGTTTTccccaatagatgcatacgactgatggtctttcgtacggctggtgtgtaaaatactgttcgtattcaaaagctatcttatagcgaccccaagaacatcagataaggctttgggcatcaactctgaatcaacaggtcattcttgacaaacggaatacaaaataatttaaacattttacatatacatgtaatgacacaagcgaacacggattaccggataataatttgttgtggtgt
gi|22 : TATTTGTAGGTCC-TGTATA--G-A-TA----TATTT-CACAACGTAC------CGT------TTAAT----------CGACTCC-----------ATT-------------------GTCTATGTAAGAGTAGTGTG--A--T------C-C-------A-ACGTTCTTG-TGT-AA--GAATG----GT-TACCCCT----------------ATTCAAAACAAT-ACAGTG--CCATGTT---TCGGACGCTAACT-CGATCATGGtcacaaaaaattaaatttacctttaaccgtgtatggtcaaatgcatatgactgatgtgcttttgtatggcggggggtggggatgggtgtgtgtgtgttaaaaattgtttgta
gi|23 : tA-AAAAG-CTTACAATGTGAATTAA-GAATGA-T-----TACTACGAAA---ATA---T-ATAGTC---A---TG-TCAAA------GCACTAAACTTGA-------------C----------AAA-GC-C-----------AGAA-TATA--CA----GATTAC--AACTA--TTCTCATGC-AGCA-CACGTGC-A-TTCTATT-TGC--C
gi|25 : aatgA-AACAA-GTG-TAATGT-AATTAA-GAATGATT-----T--TTTTAAAGATACGA--A-CTCGGC---A------------------------------------------------------AAA-TA-C----------GGGAA-GATATATT----GATTAC--A------TGCTC---T-A-----A-GTGT-G-GCTGATA-TGC--CGCTGAG-ACG----AAATC--TGcacgga
gi|3 : aATGCTTA--G-A-TAA-CACATTT-TGCCT-GTGC------CGT------A--AT----------
gi|3 : atacaagaaactaaaaatacattactgtcgtactagattaaatttcgtaatgtttgcatcggaaaagaaacaccgaaattaaatccaaaacgaattttatttacaaaaactttttatttcaattttaaaaatatgtgtcccagttgttggtaataccggtatT-------------------GT--------------------A--C------C-C-------ACGATTCGTGG-TGTGAA--GAATG----AT-TAC---T----------------AT-CAACACAAT-ACAGTGA-CCATATT---T-AGACACTGATT-CGA-CACGGGT-GCAA--GCTA-AATAG-GTT-CGATGT-AATTGA-AAATAA-T-----AACTATCAAA---ACAGAAT--TGGCC---A---CT-TTAAG------ATAGTAACTCG-A-------------C----------AAAGTT-T----------GGAAA-GAT---CG----GATTAC--AGCTAACAGCTCATGC-AG-A-GA-GAAC-G-TTTGATA-TGC--CGCTTAGTATAG---AAACC--CAT-CCGTA-CAAGCT-T-CAATGTCAA-TTTGTA-TG--G-CAC--CCAAAGAT-C--CACATGC-ACTCTATG-GGTATCCA---------------------------------AACTCCTAAGCCGCA----------TACC-----A--CACnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncttaaaagtagatgtacccacgattcgtggtgtgaagaatgattactatcaacacaatacagtgaccatatttagacactgattcgacacgggtgcaagctaaataggttcgatgtaattgaaaataataactatcaaaacagaattggccactttaagatagtaactcgacaaagtttggaaagatcggattacagctaacagctcatgcagagagaacgtttgatatgccgcttagtatagaaacccatccgtacaagcttcaatgtcaatttgtatggcacccaaagatccacatgcactctatgggtatccaaactcctaagccgcataccacac
gi|4 : atacaagaaactaaaaatacattactgtcgtactagattaaatttcgtaatgtttgcatcggaaaagaaacaccgaaattaaatccaaaacgaattttatttacaaaaactttttatttcaattttaaaaatatgtgtcccagttgttggtaataccggtatatgcttagataacacattttgcctgtgccgtaatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncttaaaagtagaTATTCGTCG-TCCGTGTATT--G-A-TAA-CATATTT-CGCCA-GTGCGGTAATTGT------C--AT----------CTTTATTCCTTAGGAGTAAAT-------------------GT--------------------A--C------C-C-------CAACTTTGTTG-CGTTGA--GAATG----AA-TAC---T----------------AC-CAAAACAGA-ACAATT--C---ATTCAAT-AAACA--AACT-CCA-CACGGAT-GCAA--ATTT-AAAAA-GTT-CGTTGT-AATTAA-GA--------------TATCAA------------CTCG--------------AAA------A-----------A------------------------AAA-TT-T----------GGGGG-AAT---CA----AATTAA--AGCTAACCACTCATGTTAG-ATCG-GCGCCG-TTTGAT-------CACTG----TA-----------TGTGCCGTG---ATAT-T-TAATGCC-A-ATTTTA-TG--A-CAC--CCGTGGAT-T--CACAT-C-ACCATGTACGGTATCCA--G--C--T--TATTC--T-TCA-GGTGA-TACGACTCCTGAGCCGTG----------TACC-----A--CACCA-TAAGTTTTTT
gi|5 : ggaatatttaattttgtgttatattaaatttcgttactttcctgtttggaaaaaaataatgaaattaaatccaacacaaatttatgtttcagaaagtctttattttgatactagaaatctgtgtctttg------AC----------A-------------C----------AAA-GTGCTG--------GGGAA-TATA--CG----GATTAC--ACATAAGCGTACATAT-AC-A-TA-TCAC-A-TTTGGTA-TGC--CGTTGCT-TTATTAGAAACT--TAT-CCGTGTCACAAT-A--AATGTT-A-TCTTTA-AG--G-CAC--CAGTAGAT-T--TACAAGC-ACTATGTA-AGTATCCA-TG--C--C------C--T-TCC-AGTGA-CACGACATCTAAGCTGCA----------TACCATACTA--TACCA-TATATTTATTTTcacagtagattatgcatacgactgatgttccttttgtacggc
gi|6 : tTATCCGTAT-TCTATGTATT--ATA-TAA-TATATCT-CTCCA-ATAC------CAT------A--ATGTATAGTATTC-----------------GTTAAGA---------------GT--------------------A--CAGGACCC-C-------TCACATTGTTG-TGTTAA--GAACG----AT-TAC---T----------------GT-CAAAACAGT-ACA-TT--TCAAATT---T-CGACACTTACT-CG-----------------CTA-AAAAG-GTT-CGATGT-AATTAA-AAACGA-T-----TACTATCAAA---ACAG--TACTGATC---A---TT-TTGAT------AT----------A-------------C----------TAG-TT---------------AA----------------CAC--AGCAAA--GTTGAGGA-AG-ATCA-GCGC-G-TTTAAAG-TGC--CGCTGAG-GCA----AAATA--CAT-CCGTG-CAAAAT-T-TGTTGTG-A-TTTTTA-CG--A-CAT--CCGTGAAT-T--TTTATGC-ACC----A-AATA---------------T---C--T-TCA-GCCAA-TACTAATCCCGAGCCGCA----------TATC-----A--T-CTACTGAATTTGTTTTcaatttatttacaccgtacagtcaaatgacggatgacgctcttccatacacactgaaaatcaaattgtttatagttgttttgttgcaggtcaaggaaatatttgtctgatgcgcctaatgaacatcgagtagggcatgggcatcagccttgtttctacaggtacctgctgattttgttgacagatggattacaataaaaataaaaaaaaaacatcattatgacttgggtaaaataatttaataaccaaagtgttgaccgattatcaaaaagtgatttgctttgtaatagatgataacatcggtgtgctaaattcatgaattgcgtgtgtatcgtaa
gi|7 : tttcaaaaaaatatttatttcagtgttagaatcctgtgcctctgtTATTCGCTG-TCCATTTATA--G-A-TAA-CATATTT-CGCCA-GTGC------AGTGAT---C--AT----------C-----------------ACTATT----------------GT--------------------A--T------T-CCTTATGAGCAGA--GTTG-TGTTGATAAAATACAGAAG-TAC---TGAGGTGCAAATGTAAGAT-CAAAAC--------TT--TCATTTT---A-AAACCCTAACT-CGA-CACAGTT-A-AA--ATTG-AAAAA-ATT-CATTGT-AATTAA-GAATGA-T-----TACTATCAAA---ACAG--CACACATC---A---TT-TTAttagaatagaatatacaatttaccattaatcgaacggttttaagcagatgtgtatggctatg
gi|8 : aaaactgttagcagtgtcacttccttgtagagtgctatagaaaaaacatccattgaacacataaagcagtacacgtacattcaagatactgtagatgtatctaaatttcatgttggattaaattccattatttttgtgtctggggaaaaaacaatgaaactaattcctacataaattttcactttcagaaaatctttattctaatgttagaaatctctgtgtctcaatT--TCAAATT---T-CGACACTTACT-CGC-CACAGGT-ACAT--GCTG-AAAAG-GTT-CGATGT-AATTAA-GAAT------------TATTA-------------CTGACC---G---CT-TTAAG------AT----------A-------------CTAACTCAACAAAA-TC-G----------GGGAA-GAT---CG----CATCAC--AGCTAACGGCTCATGC-AG-T-CA-GCGC-G-TTTGATG-TGCCGCGCTGAG-GTA----AAATC--CGT-CCGTG-CAAAATGTGTAGTG---ATTTTTTA-TG--A-CAT--CCATGGAT-T--CCCCTGC-ACC----A-AGTA---------------T---C--T-TCA-GTCGA-TACGAATCTCGAGCCGCATATATACATGTACC-----A--CTTAA-TGACTTTGTTTtatttaattcctaccaaatcagacaacaa
gi|9 : attcaacgaaaattcatcttgctatcgtacgtagtaaattagcatacttcttggtacaacgtatcaacagacaagctgcatttgccctttgagatgtaggaaagaaagatgtgatcgcttaatcaatgggttgttgatgtattttaatatttctatctttgtgctaTATTCGTAG-TCCATGTCTC--G-A-TAA-CATATTT-CACCA-ATAC------TGT------C--AT----------C-----------------ACT-------------------GT--------------------A--C------C-C-------ACACTTTGTTG-TATTAA--GAATG----AT-TGC---T----------------GT-CAAAACAGG-ACGGTTAATCGTTTT---T-GGACACTAACA-CGA-CACAGGT-GCAA--GTTA-AAAGG-GTT-CGGTGT-AATTAA-GAATGATTATATGTACTATCAAA---ACAG--T-CTGGTC---A---TT-TTAAG------AC----------A-------------C----------AAA-GC-C----------GGGAA-GGT---CG----GATTAC--AGCTATCTGCTCATGC-AG-A-CA-GTGC-G-TTTGATG-TGC--CATGGAG-ACA----TACCC--CGT-CCCTG-CAAAAT-T-TAATGTC-ATTTTTTA-TG--A-CACTACCGTGGAT-T--CACATGC-ACCCTGTA-AGTATCCA-CA--CTTT--T---C--T-TCA-GGTGA-TATGACTCCTGAGCCGCA----------TACA-----A--CACCA-TGAATTTGTTTT
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|18 ): ATATTACGTACGAATAGTTAATTTCGTGTTGATTAAATACGTTTTTGCGTACTGGAGAAACGAGGAAACTAATACAATCGATGTTTACTTCTCATAATTTTGGTTTGTTTTATATGTTTCTGTTATCGTCGTCATTTATACATAACATAAATCCACCAGTGATGCGTAATGGTCGAATTGAATTTCTAATGAGTGATGTTCTG
Unaligned ( gi|20 ): AAATACTAAAAAAGTATCTAATATTGTGTTATATTATATTTCGTTATCTTGGTGTCTGTGAGAAAAGTAAATTCAATATAACACGAATTTCTTACTTAAAAAAACTTTAGTTTAACAAAATTTTAACTTTAAAAAATCTGTAATGTTAGAATCATGTGTCTGTTATTCTTCGTCCATTTATATAGCACATT
Unaligned ( gi|24 ): TACTGTAGATGTATTTAATTTCATGTTGGATTAAATATCATTATTTTCATGTTTGGGAGAAGACAACAAAATTAACACAAATTTATGATTTCAGAAATCTGTATTTTAATATTAGAAATCTGAA
Unaligned ( gi|26 ): AGAAAACAACGAAATTAAATCCAACACGAGTTTTATTTTCAAGAAATCTTTATTTCAGTGTTAGAAATGTGTGTTTCTGTTATTCGTAGTCATGTCTCGAT
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 222222222222222222222222222222 111111111111 2222222222 666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 111 11111111 111111111111 444444444444444 1111111111
lowQualScore : 3 888 3 3 3 6 3 9999999 777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 77 0 3 44 0 444444444444444444444444444444 3 444444444444 555 44 1 3 6 0 88888888 33 2 2 1 2 2 9999999999 555 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 2 2 55 000 66666 44 1 666 3 3 6 3 3 3 77 33 11111111 44 3 444444444444 555 6 44 44 3 44 0 3 44 0 1 3 7 3 1 444444444444444 44 3 3 2 2 2222222222 77777 44 3
lowQualScore : . ... . . . . . ....... ........................................................................................................................ .. . . .. . .............................. . ............ ... .. . . . . ........ .. . . . . . .......... ... ............................................................................................. . . .. ... ..... .. . ... . . . . . . .. .. ........ .. . ............ ... . .. .. . .. . . .. . . . . . . ............... .. . . . . .......... ..... .. .
lowQualScore : 6 999 3 3 3 7 3 7777777 222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 22 8 6 66 4 222222222222222222222222222222 3 333333333333 444 44 5 1 2 2 44444444 00 9 9 4 9 9 9999999999 000 888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 9 9 22 777 11111 22 4 888 1 1 2 1 1 1 11 99 55555555 22 3 666666666666 333 7 00 66 3 66 7 3 66 4 0 3 8 1 5 000000000000000 22 1 1 9 1 5555555555 11111 22 3
consensus : TATTCGTAG-TCCATGTATN--G-A-TAA-CATATTT-CGCCA-GTAC------CGT------C--AT----------C-----------------ACT-------------------GT------------------A--------------------C------C-C-------GCACNTTGTTG-TGTTAA--GAATG----AT-TAC---T----------------AT-CAAAACAGN-ACGGTT--TCATATT---T-AGACACTAACT-CGA-CACGGGT-GCAA--GTTA-AAAAG-GTT-CGATGT-AATTAA-GAATGATT-----TACTATCAAA---ACAG--T-CTGGTC---A---TT-TTAAG------AC---------A-------------C---------AAA-NT-C----------G--------GG-A-A-GAT---CG----GATTAC--AGCTAACTGCTCATGC-AG-A-CA-GCGC-G-TTTGATN-TGC--CGCTGAG-ATA----AAACC--CGT-CCGTG-CAAAAT-T-TAATGTC-A-TTTTTA-TG--A-CAC--CCGTGGAT-T--CACATGC-ACCATGTA-AGTATCCA-CG--C--C--T---C--T-TCA-GGTGA-TACGACTCCTGAGCCGCA----------TACC-----A--CACCA-TGAATTTGTTTT
Reference ( family-78 ) : TATTCGTAG-TCCATGTATN--G-A-TAA-CATATTT-CGCCA-GTAC------CGT------C--AT----------C-----------------ACT-------------------GT------------------A--------------------C------C-C-------GCACNTTGTTG-TGTTAA--GAATG----AT-TAC---T----------------AT-CAAAACAGN-ACGGTT--TCATATT---T-AGACACTAACT-CGA-CACGGGT-GCAA--GTTA-AAAAG-GTT-CGATGT-AATTAA-GAATGATT-----TACTATCAAA---ACAG--T-CTGGTC---A---TT-TTAAG------AC---------A-------------C---------AAA-NT-C----------G--------GG-A-A-GAT---CG----GATTAC--AGCTAACTGCTCATGC-AG-A-CA-GCGC-G-TTTGATN-TGC--CGCTGAG-ATA----AAACC--CGT-CCGTG-CAAAAT-T-TAATGTC-A-TTTTTA-TG--A-CAC--CCGTGGAT-T--CACATGC-ACCATGTA-AGTATCCA-CG--C--C--T---C--T-TCA-GGTGA-TACGACTCCTGAGCCGCA----------TACC-----A--CACCA-TGAATTTGTTTT
gi|1 : ATTCGACG-TCCATTTATA--G-A-ATA-CATACTT-CGCCA-GTAC------TGC------A--ATTGTCTG----C-----------------ACT-------------------GT------------------ATTCCCTATGAGTAAATTTAAC------C-C-------GCACTTTCATG-TGTTAA--TATTGC---ATGTA----T----------------AT-TTGA-----------T--TGATATA---T-TG-CA--AAAT---A-CTCTGGT-GTAA--ATGA-CAAAG--TT-CAA-----AGTAG-GAATGA-T-----TACTTTCAAA---TCAG--T-ACGGT--------TTATTAAA------AC---------G-------------C---------TAA-CT-T----------G--------AC-A-A-GGT---CGATGTGATTA
gi|1 : ggattatatttcgttattttcgtgtctgggagaaatcacagaaattaatcctacacgaatctttaatttttagatttttaaattctaatgctacataTAG--GAATG----AT-TAC---T----------------TT-CAAATCAGT-ACGGTT--T---ATT---A-AAACGCTAACT-TGA-CA--------------------AG-GT--CGATGT-GATTAA-TAATGATT-----TG-TACCAAA---ACAG--GACTGTTCGGTA---TT-ATAAGTTCTCGAC---------AAAGCCAGGGTCGAC---------AAA-GC-CA---------G--------GG-A-A-GGT---TG----GGTTAC--GGCTAACTGCTCGTGC-AG-A-CA-GCGC-G-TGTGATT-TGA--CTCTGAG-ATG----AAACT--CAT-CCGTG-CAAGAT-T-TAATGTC-A--CTTTA-AG--A-CAC--CGATACAT-T--CCGATGC-A-----TA-AGTAT--A---------------------CA-GGTCA-TCCGGCACCCAGGCCGCA----------TAGC-----A--CGCCA-CGAataatgatttgtaccaaaacaggactgttcggtattataagttctcgacaaagccagggtcgacaaagccagggaaggttgggttacggctaactgctcgtgcagacagcgcgtgtgatttgactctgagatgaaactcatccgtgcaagatttaatgtcactttaagacaccgatacattccgatgcataagtatacaggtcatccggcacccaggccgcatagcacgccacgattggggtatcaagtcacctttaactggattagagtgttacatgtaaatagttggtttgctgcagattaataacatatttgtcctggtatgtcctgatatgtcgccatgaacatcgagcagggtgtgggcaacaatctttttttctacaagtctttgaaaatgctacctacacccggaatacaaaataattcgaaattataatgacgtggataaaagcaatgtgattaccctgcgtatacagatcaccgagcaataaattattgtggattaggtggtaataacagatacataaacggcgaatgtatagtaatg
gi|10 : ggattatatttcgttattttcgtgtctgggagaaatcacagaaattaatcctacacgaatctttaatttttagatttttaaattctaatgctacataattcgacgtccatttatagaatacatacttcgccagtactgcaattgtctgcactgtattccctatgagtaaatttaacccgcactttcatgtgttaatattgcatgtatatttgattgatatattgcaaaatactctggtgtaaatgacaaagttcaaagATTAAAGAATAACT-----TA---TCAAA---ACAG--C-ATTGCC---AATATT-TAAAC------TC---------A-------------A---------AAA-GT-C----------G--------GG-A-AAGAT---CG------TTATCAAGTTATATGTCCATAC-CG-A-CG-GCGC-G-TTTGATACTGT--CGTTGAG--TA----AAACC--CGT-CCGTG----------------C-A-TTTTTATTG--ACCAC--CCACCGATCT--CACATGCTACCATGTA-GGT-TCCACCG--C--TG-T---C--TGTCAGGGTGACCAAAAC-CCTAAGCTGCA----------TATT-----GTTCACAA-TGAttggggtatcaagtcacctttaactggattagagtgttacatgtaaatagttggtttgctgcagattaataacatatttgtcctggtatgtcctgatatgtcgccatgaacatcgagcagggtgtgggcaacaatctttttttctacaagtctttgaaaatgctacctacacccggaatacaaaataattcgaaattataatgacgtggataaaagcaatgtgattaccctgcgtatacagatcaccgagcaataaattattgtggattaggtggtaataacagatacataaacggcgaatgtatagtaatg
gi|11 : T-------------------GT------------------A--------------------C------A-C-------GCACTTTGAT-------------TG----AT-TAC---T----------------AT-CAAAGCATA-A--ATT--T-ATAAT---T-AGAAACTAACT-CCA-TAGGGGT-GAAAAAGTTC-AAAAG-GCC-CGATGT-AATTAG-GAATGA-T-----TACTATCAAA---ACAGC-T-CAGGTC---A---AT-TTAAG------AC---------A-------------C---------TAA-CT-C----------G--------AC-A-A-AAT---CA----G---------------GGGCATGC-AT-A-CA-AAGC-G-TTTGATT-TGC--CGCTCAG-AAA----AAACC--TGT-TCGTG-C----------------------CA-TG--A-TAC--CCGTGA------CGCAT-------TGTA-AGTATCGA-T---T--T--T---A--T-TCA-GGTGA-TACGACTTCTGAGTCACA----------TACT-----G--CAC-------TTTATTTTtcagtcttaccgttaaactgtacggtcacatgctacgtactgattctcgtacggaggaaggtgggggagggtgtttgtgttgtttaatgttgttcattagtatttgcaagatagattaaggaatgtttgtctcatgaacatcgagcagggcgttccacgggcatcaac
gi|12 : tccgtacgtaaattctacctcattatatcccttatgagtaga--CACTGAG-A-G----AAACC--CAT-TTATG-TCACAT-T-CAATGTC-A-TTTTT--TGGAA-AAC--CCG--------------AC-AATATGTA-AGAATCTA-CA--C--C--T---CTAT-TCA-TGTGA-TACGA--CCTGGATTGCG----------TGCC-----tc
gi|13 : TTCGTA--TCCATGTCTCTGA-A-TAAACGTATTTTCGCCA-ATAC------TGT------CC-ATTT--------C-----------------ATTT------------------GT------------------A--------------------T------A-C-------GCA--TTGCTGCTATTAA--AAA--------------------------------------AACAGGGACAGGT--TCATATT---T-GGACAGTAACAACGATCACGGGT-GGCA--GTTA-AAAGT-GTT-CGGTAT-tttcaatttacttttaactgtaaggtcacgtggctgctggttttcgtacaactgggggaaggggagtaaataaattgttttatgtcgctattttgtagcaagtcgatggaatctgtcctggtgtgccatttggacattgagcaaagcgaaggtgggagctttgtttccttaggtgcattcagtatctttgtgtgaatttatttgacaaactgactaccataa
gi|14 : tattgtaagacgtatttaattttcgtttttggatttaaatttcgttgctttcgtgtctgaatagaaaacaacacgaaatgaaatccaacaagatgaaatatctttacttcagtgttagaaatgtgtgtctctgtttTATTGGTAA-TCCATTTATTA-G-A-TAA-TATATTT-TGTCA-GTAC------CAT------tt
gi|15 : aaacatttattggacttatatttctgtcctgtgaaattaaggtacatatatatgtagatgtatctaaatttttgttaaatatattatgttcttttcatatctatgtgaaaacaaaatcaaatccaacaagaatttttaaatttcaggaaatattgtcacagttatttctgtATTCA-GAAAAATT-----GA-TATTAAA---ACAG--CACGGGTT---A---TT-CTTAA------AC---------A-------------CTTACTCAATAAA-AT-C----------G--------GG-GGA-AAT---CG----TATTAC--AACTAACTGATCATGA-AG-A-CA-GAGC-G-TTTGATA-TGC--CGCTGAG-ATG----AAACC--CGT-CCGCA-CA--------AATGGG-A-TTTTTA-TG--A-CAC--CCAAAGAT-TCACACATAC-ACCCTGTA-AGCATGCA-CG--T--CCGT---C--T-TAG-GATGA-TAAGACCCCTGAGCTGCA----------TACC-----A--CACCA-TGAGTTTGTTTTactggttgctatggtatttcttatgagtagatgtaacttgtattttgttgtgttaat
gi|16 : TATTCGTCG-TGCATTTACA--T-A-TAA-CATATTT-CGCCA-GTAC------TGT------A--AT----------tcacaata
gi|17 : taaactgacgtcatatttcagtacacatatatggtttcgtgttggactttcgtgttttggatgaaacagcgaaatcaactccaacacggagttttaatttctgaaaatctttagaaatttatatctttgtTTCGTAG-TCCATGTCTC--G-AATAA-CGTATTTTCGCCA-ATAC------TGT------C--AT----------C-----------------ATT-------------------GT------------------A--------------------T------AAC-------GCA--TTGCTG-TATTAA--AAA--------------------------------------AACAGG-ACAGTT---CATATT---T-GGACAGTAACA-CGA-CACGGGTGGCAA--GTTATAAACGTGTT-CGGTAT-tgtcacaactgagtagatgtactatgcatgtgcacgcgtga
gi|19 : agaaatatctttacttcgtgttagaaatgtgttgtctcttgttcGTGA-TACTATTCCTGAACCGCA----------TACA-----A--CACCA-TGAATTTGTTTTtttggagaaattacgctggcaacaaaacaat
gi|2 : atTATTCATAG-ACTTTGTATA--G-A-TAG-CATATCT-TTCCA-GTAC------CGTAATCGAC--AC----------C-----------------ACTTTATTCCCTAAGAGTAGATGT------------------ATT------------------C------C-C-------TCACATTGATG-TGTTAT--GAATG----GT-TGC---T----------------AT-CAAAACAGT-A-G--T--TCACATT---T-AGACACAAACT-CGA-TATGGGT-GTA----------------T-CG-TTT-AAATCA-G--TGGT-------------------ACAA--T-C--------A---TT-TTAAGGT----ACATGT-----A-------------C---------AAA-TT-CGACAAAGACGG--------GG-G-A-TAT---CA----GATTAC--AATTAACTCCTCACGT-AG-A-CA-GCGT-GTTTTGATG-TGC--CGCTGGA-AAA----AAACCTACGT-CCGTT-CAAAAT-T-T-ATGTC-A-TTTTTG------------CTGTGTAT-T--CAAATGC-ACCATGCA-AGTATCCA-CGCTC--T--T---C--C-TCA-GACTA-TACGACCCCTGAACCGCA----------TGCA-----A--CACCA-ATAATTTGTTTTtcacaatgtatttcaatttactgttaatcgtgcggtcaaataaacaagttgaacgttataacgtcataattacaaagcacgcgtgacgttgcgctacacgtaaacaataacgcgccaaataaataaacaattcttacacatatatctaactg
gi|21 : aacatatttaatttcgtgttggattaaatttccgcatattcgcgtctggaagaagacagcgatattaaatgaaaatatgtgtttctatCATGTA-ATTATGCA-CG--T--CCAT---C--T-TCA-GGTGA-TATGACTCCTAGGCCGCA----------TAAC-----A--TACCA-TGAATTTGTTTTccccaatagatgcatacgactgatggtctttcgtacggctggtgtgtaaaatactgttcgtattcaaaagctatcttatagcgaccccaagaacatcagataaggctttgggcatcaactctgaatcaacaggtcattcttgacaaacggaatacaaaataatttaaacattttacatatacatgtaatgacacaagcgaacacggattaccggataataatttgttgtggtgt
gi|22 : TATTTGTAGGTCC-TGTATA--G-A-TA----TATTT-CACAACGTAC------CGT------TTAAT----------CGACTCC-----------ATT-------------------GTCTATGTAAGAGTAGTGTGA--------------------T------C-C-------A-ACGTTCTTG-TGT-AA--GAATG----GT-TACCCCT----------------ATTCAAAACAAT-ACAGTG--CCATGTT---TCGGACGCTAACT-CGATCATGGtcacaaaaaattaaatttacctttaaccgtgtatggtcaaatgcatatgactgatgtgcttttgtatggcggggggtggggatgggtgtgtgtgtgttaaaaattgtttgta
gi|23 : tA-AAAAG-CTTACAATGTGAATTAA-GAATGA-T-----TACTACGAAA---ATA---T-ATAGTC---A---TG-TCAAA------GC---------A-------------CT--------AAA-CT-T----------GACAAAGCCAG-A-A-TATA--CA----GATTAC--AACTA--TTCTCATGC-AGCA-CACGTGC-A-TTCTATT-TGC--C
gi|25 : aatgA-AACAA-GTG-TAATGT-AATTAA-GAATGATT-----T--TTTTAAAGATACGA--A-CTCGGC---A----------------------------------------------------AAA-TA-C----------G--------GG-A-A-GATATATT----GATTAC--A------TGCTC---T-A-----A-GTGT-G-GCTGATA-TGC--CGCTGAG-ACG----AAATC--TGcacgga
gi|3 : aATGCTTA--G-A-TAA-CACATTT-TGCCT-GTGC------CGT------A--AT----------
gi|3 : atacaagaaactaaaaatacattactgtcgtactagattaaatttcgtaatgtttgcatcggaaaagaaacaccgaaattaaatccaaaacgaattttatttacaaaaactttttatttcaattttaaaaatatgtgtcccagttgttggtaataccggtatT-------------------GT------------------A--------------------C------C-C-------ACGATTCGTGG-TGTGAA--GAATG----AT-TAC---T----------------AT-CAACACAAT-ACAGTGA-CCATATT---T-AGACACTGATT-CGA-CACGGGT-GCAA--GCTA-AATAG-GTT-CGATGT-AATTGA-AAATAA-T-----AACTATCAAA---ACAGAAT--TGGCC---A---CT-TTAAG------ATAGTAACTCGA-------------C---------AAAGTT-T----------G--------GA-A-A-GAT---CG----GATTAC--AGCTAACAGCTCATGC-AG-A-GA-GAAC-G-TTTGATA-TGC--CGCTTAGTATAG---AAACC--CAT-CCGTA-CAAGCT-T-CAATGTCAA-TTTGTA-TG--G-CAC--CCAAAGAT-C--CACATGC-ACTCTATG-GGTATCCA---------------------------------AACTCCTAAGCCGCA----------TACC-----A--CACnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncttaaaagtagatgtacccacgattcgtggtgtgaagaatgattactatcaacacaatacagtgaccatatttagacactgattcgacacgggtgcaagctaaataggttcgatgtaattgaaaataataactatcaaaacagaattggccactttaagatagtaactcgacaaagtttggaaagatcggattacagctaacagctcatgcagagagaacgtttgatatgccgcttagtatagaaacccatccgtacaagcttcaatgtcaatttgtatggcacccaaagatccacatgcactctatgggtatccaaactcctaagccgcataccacac
gi|4 : atacaagaaactaaaaatacattactgtcgtactagattaaatttcgtaatgtttgcatcggaaaagaaacaccgaaattaaatccaaaacgaattttatttacaaaaactttttatttcaattttaaaaatatgtgtcccagttgttggtaataccggtatatgcttagataacacattttgcctgtgccgtaatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncttaaaagtagaTATTCGTCG-TCCGTGTATT--G-A-TAA-CATATTT-CGCCA-GTGCGGTAATTGT------C--AT----------CTTTATTCCTTAGGAGTAAAT-------------------GT------------------A--------------------C------C-C-------CAACTTTGTTG-CGTTGA--GAATG----AA-TAC---T----------------AC-CAAAACAGA-ACAATT--C---ATTCAAT-AAACA--AACT-CCA-CACGGAT-GCAA--ATTT-AAAAA-GTT-CGTTGT-AATTAA-GA--------------TATCAA------------CTCG--------------AAA------A----------A-----------------------AAA-TT-T----------G--------GG-G-G-AAT---CA----AATTAA--AGCTAACCACTCATGTTAG-ATCG-GCGCCG-TTTGAT-------CACTG----TA-----------TGTGCCGTG---ATAT-T-TAATGCC-A-ATTTTA-TG--A-CAC--CCGTGGAT-T--CACAT-C-ACCATGTACGGTATCCA--G--C--T--TATTC--T-TCA-GGTGA-TACGACTCCTGAGCCGTG----------TACC-----A--CACCA-TAAGTTTTTT
gi|5 : ggaatatttaattttgtgttatattaaatttcgttactttcctgtttggaaaaaaataatgaaattaaatccaacacaaatttatgtttcagaaagtctttattttgatactagaaatctgtgtctttg------AC---------A-------------C---------AAA-GTGCTG--------G--------GG-A-A-TATA--CG----GATTAC--ACATAAGCGTACATAT-AC-A-TA-TCAC-A-TTTGGTA-TGC--CGTTGCT-TTATTAGAAACT--TAT-CCGTGTCACAAT-A--AATGTT-A-TCTTTA-AG--G-CAC--CAGTAGAT-T--TACAAGC-ACTATGTA-AGTATCCA-TG--C--C------C--T-TCC-AGTGA-CACGACATCTAAGCTGCA----------TACCATACTA--TACCA-TATATTTATTTTcacagtagattatgcatacgactgatgttccttttgtacggc
gi|6 : tTATCCGTAT-TCTATGTATT--ATA-TAA-TATATCT-CTCCA-ATAC------CAT------A--ATGTATAGTATTC-----------------GTTAAGA---------------GT------------------A--------------------CAGGACCC-C-------TCACATTGTTG-TGTTAA--GAACG----AT-TAC---T----------------GT-CAAAACAGT-ACA-TT--TCAAATT---T-CGACACTTACT-CG-----------------CTA-AAAAG-GTT-CGATGT-AATTAA-AAACGA-T-----TACTATCAAA---ACAG--TACTGATC---A---TT-TTGAT------AT---------A-------------C---------TAG-TT------------------------A-A----------------CAC--AGCAAA--GTTGAGGA-AG-ATCA-GCGC-G-TTTAAAG-TGC--CGCTGAG-GCA----AAATA--CAT-CCGTG-CAAAAT-T-TGTTGTG-A-TTTTTA-CG--A-CAT--CCGTGAAT-T--TTTATGC-ACC----A-AATA---------------T---C--T-TCA-GCCAA-TACTAATCCCGAGCCGCA----------TATC-----A--T-CTACTGAATTTGTTTTcaatttatttacaccgtacagtcaaatgacggatgacgctcttccatacacactgaaaatcaaattgtttatagttgttttgttgcaggtcaaggaaatatttgtctgatgcgcctaatgaacatcgagtagggcatgggcatcagccttgtttctacaggtacctgctgattttgttgacagatggattacaataaaaataaaaaaaaaacatcattatgacttgggtaaaataatttaataaccaaagtgttgaccgattatcaaaaagtgatttgctttgtaatagatgataacatcggtgtgctaaattcatgaattgcgtgtgtatcgtaa
gi|7 : tttcaaaaaaatatttatttcagtgttagaatcctgtgcctctgtTATTCGCTG-TCCATTTATA--G-A-TAA-CATATTT-CGCCA-GTGC------AGTGAT---C--AT----------C-----------------ACTATT----------------GT------------------A--------------------T------T-CCTTATGAGCAGA--GTTG-TGTTGATAAAATACAGAAG-TAC---TGAGGTGCAAATGTAAGAT-CAAAAC--------TT--TCATTTT---A-AAACCCTAACT-CGA-CACAGTT-A-AA--ATTG-AAAAA-ATT-CATTGT-AATTAA-GAATGA-T-----TACTATCAAA---ACAG--CACACATC---A---TT-TTAttagaatagaatatacaatttaccattaatcgaacggttttaagcagatgtgtatggctatg
gi|8 : aaaactgttagcagtgtcacttccttgtagagtgctatagaaaaaacatccattgaacacataaagcagtacacgtacattcaagatactgtagatgtatctaaatttcatgttggattaaattccattatttttgtgtctggggaaaaaacaatgaaactaattcctacataaattttcactttcagaaaatctttattctaatgttagaaatctctgtgtctcaatT--TCAAATT---T-CGACACTTACT-CGC-CACAGGT-ACAT--GCTG-AAAAG-GTT-CGATGT-AATTAA-GAAT------------TATTA-------------CTGACC---G---CT-TTAAG------AT---------A-------------CTAACTCAACAAA-AT-C----------G--------GGGA-A-GAT---CG----CATCAC--AGCTAACGGCTCATGC-AG-T-CA-GCGC-G-TTTGATG-TGCCGCGCTGAG-GTA----AAATC--CGT-CCGTG-CAAAATGTGTAGTG---ATTTTTTA-TG--A-CAT--CCATGGAT-T--CCCCTGC-ACC----A-AGTA---------------T---C--T-TCA-GTCGA-TACGAATCTCGAGCCGCATATATACATGTACC-----A--CTTAA-TGACTTTGTTTtatttaattcctaccaaatcagacaacaa
gi|9 : attcaacgaaaattcatcttgctatcgtacgtagtaaattagcatacttcttggtacaacgtatcaacagacaagctgcatttgccctttgagatgtaggaaagaaagatgtgatcgcttaatcaatgggttgttgatgtattttaatatttctatctttgtgctaTATTCGTAG-TCCATGTCTC--G-A-TAA-CATATTT-CACCA-ATAC------TGT------C--AT----------C-----------------ACT-------------------GT------------------A--------------------C------C-C-------ACACTTTGTTG-TATTAA--GAATG----AT-TGC---T----------------GT-CAAAACAGG-ACGGTTAATCGTTTT---T-GGACACTAACA-CGA-CACAGGT-GCAA--GTTA-AAAGG-GTT-CGGTGT-AATTAA-GAATGATTATATGTACTATCAAA---ACAG--T-CTGGTC---A---TT-TTAAG------AC---------A-------------C---------AAA-GC-C----------G--------GG-A-A-GGT---CG----GATTAC--AGCTATCTGCTCATGC-AG-A-CA-GTGC-G-TTTGATG-TGC--CATGGAG-ACA----TACCC--CGT-CCCTG-CAAAAT-T-TAATGTC-ATTTTTTA-TG--A-CACTACCGTGGAT-T--CACATGC-ACCCTGTA-AGTATCCA-CA--CTTT--T---C--T-TCA-GGTGA-TATGACTCCTGAGCCGCA----------TACA-----A--CACCA-TGAATTTGTTTT
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|18 ): ATATTACGTACGAATAGTTAATTTCGTGTTGATTAAATACGTTTTTGCGTACTGGAGAAACGAGGAAACTAATACAATCGATGTTTACTTCTCATAATTTTGGTTTGTTTTATATGTTTCTGTTATCGTCGTCATTTATACATAACATAAATCCACCAGTGATGCGTAATGGTCGAATTGAATTTCTAATGAGTGATGTTCTG
Unaligned ( gi|20 ): AAATACTAAAAAAGTATCTAATATTGTGTTATATTATATTTCGTTATCTTGGTGTCTGTGAGAAAAGTAAATTCAATATAACACGAATTTCTTACTTAAAAAAACTTTAGTTTAACAAAATTTTAACTTTAAAAAATCTGTAATGTTAGAATCATGTGTCTGTTATTCTTCGTCCATTTATATAGCACATT
Unaligned ( gi|24 ): TACTGTAGATGTATTTAATTTCATGTTGGATTAAATATCATTATTTTCATGTTTGGGAGAAGACAACAAAATTAACACAAATTTATGATTTCAGAAATCTGTATTTTAATATTAGAAATCTGAA
Unaligned ( gi|26 ): AGAAAACAACGAAATTAAATCCAACACGAGTTTTATTTTCAAGAAATCTTTATTTCAGTGTTAGAAATGTGTGTTTCTGTTATTCGTAGTCATGTCTCGAT
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 222222222222222222222222222222 111111111111 2222222222 666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 111 11111111 111111111111 444444444444444 1111111111
lowQualScore : 3 888 3 3 3 6 3 9999999 777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 77 0 3 44 0 444444444444444444444444444444 3 444444444444 555 44 1 3 6 0 88888888 33 2 2 1 2 2 9999999999 555 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 2 2 55 000 66666 44 1 666 3 3 6 3 3 3 77 33 11111111 44 3 444444444444 555 6 44 44 3 44 0 3 44 0 1 3 7 3 1 444444444444444 44 3 3 2 2 2222222222 77777 44 3
lowQualScore : . ... . . . . . ....... ........................................................................................................................ .. . . .. . .............................. . ............ ... .. . . . . ........ .. . . . . . .......... ... ............................................................................................. . . .. ... ..... .. . ... . . . . . . .. .. ........ .. . ............ ... . .. .. . .. . . .. . . . . . . ............... .. . . . . .......... ..... .. .
lowQualScore : 6 999 3 3 3 7 3 7777777 222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 22 8 6 66 4 222222222222222222222222222222 3 333333333333 444 44 5 1 2 2 44444444 00 9 9 4 9 9 9999999999 000 888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 9 9 22 777 11111 22 4 888 1 1 2 1 1 1 11 99 55555555 22 3 666666666666 333 7 00 66 3 66 7 3 66 4 0 3 8 1 5 000000000000000 22 1 1 9 1 5555555555 11111 22 3
consensus : TATTCGTAG-TCCATGTATN--G-A-TAA-CATATTT-CGCCA-GTAC------CGT------C--AT----------C-----------------ACT-------------------GT------------------A--------------------C------C-C-------GCACNTTGTTG-TGTTAA--GAATG----AT-TAC---T----------------AT-CAAAACAGN-ACGGTT--TCATATT---T-AGACACTAACT-CGA-CACGGGT-GCAA--GTTA-AAAAG-GTT-CGATGT-AATTAA-GAATGATT-----TACTATCAAA---ACAG--T-CTGGTC---A---TT-TTAAG------AC---------A-------------C---------AAA-NT-C----------G--------GG-A-A-GAT---CG----GATTAC--AGCTAACTGCTCATGC-AG-A-CA-GCGC-G-TTTGATN-TGC--CGCTGAG-ATA----AAACC--CGT-CCGTG-CAAAAT-T-TAATGTC-A-TTTTTA-TG--A-CAC--CCGTGGAT-T--CACATGC-ACCATGTA-AGTATCCA-CG--C--C--T---C--T-TCA-GGTGA-TACGACTCCTGAGCCGCA----------TACC-----A--CACCA-TGAATTTGTTTT
Reference ( family-78 ) : TATTCGTAG-TCCATGTATN--G-A-TAA-CATATTT-CGCCA-GTAC------CGT------C--AT----------C-----------------ACT-------------------GT------------------A--------------------C------C-C-------GCACNTTGTTG-TGTTAA--GAATG----AT-TAC---T----------------AT-CAAAACAGN-ACGGTT--TCATATT---T-AGACACTAACT-CGA-CACGGGT-GCAA--GTTA-AAAAG-GTT-CGATGT-AATTAA-GAATGATT-----TACTATCAAA---ACAG--T-CTGGTC---A---TT-TTAAG------AC---------A-------------C---------AAA-NT-C----------G--------GG-A-A-GAT---CG----GATTAC--AGCTAACTGCTCATGC-AG-A-CA-GCGC-G-TTTGATN-TGC--CGCTGAG-ATA----AAACC--CGT-CCGTG-CAAAAT-T-TAATGTC-A-TTTTTA-TG--A-CAC--CCGTGGAT-T--CACATGC-ACCATGTA-AGTATCCA-CG--C--C--T---C--T-TCA-GGTGA-TACGACTCCTGAGCCGCA----------TACC-----A--CACCA-TGAATTTGTTTT
gi|1 : ATTCGACG-TCCATTTATA--G-A-ATA-CATACTT-CGCCA-GTAC------TGC------A--ATTGTCTG----C-----------------ACT-------------------GT------------------ATTCCCTATGAGTAAATTTAAC------C-C-------GCACTTTCATG-TGTTAA--TATTGC---ATGTA----T----------------AT-TTGA-----------T--TGATATA---T-TG-CA--AAAT---A-CTCTGGT-GTAA--ATGA-CAAAG--TT-CAA-----AGTAG-GAATGA-T-----TACTTTCAAA---TCAG--T-ACGGT--------TTATTAAA------AC---------G-------------C---------TAA-CT-T----------G--------AC-A-A-GGT---CGATGTGATTA
gi|1 : ggattatatttcgttattttcgtgtctgggagaaatcacagaaattaatcctacacgaatctttaatttttagatttttaaattctaatgctacataTAG--GAATG----AT-TAC---T----------------TT-CAAATCAGT-ACGGTT--T---ATT---A-AAACGCTAACT-TGA-CA--------------------AG-GT--CGATGT-GATTAA-TAATGATT-----TG-TACCAAA---ACAG--GACTGTTCGGTA---TT-ATAAGTTCTCGAC---------AAAGCCAGGGTCGAC---------AAA-GC-CA---------G--------GG-A-A-GGT---TG----GGTTAC--GGCTAACTGCTCGTGC-AG-A-CA-GCGC-G-TGTGATT-TGA--CTCTGAG-ATG----AAACT--CAT-CCGTG-CAAGAT-T-TAATGTC-A--CTTTA-AG--A-CAC--CGATACAT-T--CCGATGC-A-----TA-AGTAT--A---------------------CA-GGTCA-TCCGGCACCCAGGCCGCA----------TAGC-----A--CGCCA-CGAataatgatttgtaccaaaacaggactgttcggtattataagttctcgacaaagccagggtcgacaaagccagggaaggttgggttacggctaactgctcgtgcagacagcgcgtgtgatttgactctgagatgaaactcatccgtgcaagatttaatgtcactttaagacaccgatacattccgatgcataagtatacaggtcatccggcacccaggccgcatagcacgccacgattggggtatcaagtcacctttaactggattagagtgttacatgtaaatagttggtttgctgcagattaataacatatttgtcctggtatgtcctgatatgtcgccatgaacatcgagcagggtgtgggcaacaatctttttttctacaagtctttgaaaatgctacctacacccggaatacaaaataattcgaaattataatgacgtggataaaagcaatgtgattaccctgcgtatacagatcaccgagcaataaattattgtggattaggtggtaataacagatacataaacggcgaatgtatagtaatg
gi|10 : ggattatatttcgttattttcgtgtctgggagaaatcacagaaattaatcctacacgaatctttaatttttagatttttaaattctaatgctacataattcgacgtccatttatagaatacatacttcgccagtactgcaattgtctgcactgtattccctatgagtaaatttaacccgcactttcatgtgttaatattgcatgtatatttgattgatatattgcaaaatactctggtgtaaatgacaaagttcaaagATTAAAGAATAACT-----TA---TCAAA---ACAG--C-ATTGCC---AATATT-TAAAC------TC---------A-------------A---------AAA-GT-C----------G--------GG-A-AAGAT---CG------TTATCAAGTTATATGTCCATAC-CG-A-CG-GCGC-G-TTTGATACTGT--CGTTGAG--TA----AAACC--CGT-CCGTG----------------C-A-TTTTTATTG--ACCAC--CCACCGATCT--CACATGCTACCATGTA-GGT-TCCACCG--C--TG-T---C--TGTCAGGGTGACCAAAAC-CCTAAGCTGCA----------TATT-----GTTCACAA-TGAttggggtatcaagtcacctttaactggattagagtgttacatgtaaatagttggtttgctgcagattaataacatatttgtcctggtatgtcctgatatgtcgccatgaacatcgagcagggtgtgggcaacaatctttttttctacaagtctttgaaaatgctacctacacccggaatacaaaataattcgaaattataatgacgtggataaaagcaatgtgattaccctgcgtatacagatcaccgagcaataaattattgtggattaggtggtaataacagatacataaacggcgaatgtatagtaatg
gi|11 : T-------------------GT------------------A--------------------C------A-C-------GCACTTTGAT-------------TG----AT-TAC---T----------------AT-CAAAGCATA-A--ATT--T-ATAAT---T-AGAAACTAACT-CCA-TAGGGGT-GAAAAAGTTC-AAAAG-GCC-CGATGT-AATTAG-GAATGA-T-----TACTATCAAA---ACAGC-T-CAGGTC---A---AT-TTAAG------AC---------A-------------C---------TAA-CT-C----------G--------AC-A-A-AAT---CA----G---------------GGGCATGC-AT-A-CA-AAGC-G-TTTGATT-TGC--CGCTCAG-AAA----AAACC--TGT-TCGTG-C----------------------CA-TG--A-TAC--CCGTGA------CGCAT-------TGTA-AGTATCGA-T---T--T--T---A--T-TCA-GGTGA-TACGACTTCTGAGTCACA----------TACT-----G--CAC-------TTTATTTTtcagtcttaccgttaaactgtacggtcacatgctacgtactgattctcgtacggaggaaggtgggggagggtgtttgtgttgtttaatgttgttcattagtatttgcaagatagattaaggaatgtttgtctcatgaacatcgagcagggcgttccacgggcatcaac
gi|12 : tccgtacgtaaattctacctcattatatcccttatgagtaga--CACTGAG-A-G----AAACC--CAT-TTATG-TCACAT-T-CAATGTC-A-TTTTT--TGGAA-AAC--CCG--------------AC-AATATGTA-AGAATCTA-CA--C--C--T---CTAT-TCA-TGTGA-TACGA--CCTGGATTGCG----------TGCC-----tc
gi|13 : TTCGTA--TCCATGTCTCTGA-A-TAAACGTATTTTCGCCA-ATAC------TGT------CC-ATTT--------C-----------------ATTT------------------GT------------------A--------------------T------A-C-------GCA--TTGCTGCTATTAA--AAA--------------------------------------AACAGGGACAGGT--TCATATT---T-GGACAGTAACAACGATCACGGGT-GGCA--GTTA-AAAGT-GTT-CGGTAT-tttcaatttacttttaactgtaaggtcacgtggctgctggttttcgtacaactgggggaaggggagtaaataaattgttttatgtcgctattttgtagcaagtcgatggaatctgtcctggtgtgccatttggacattgagcaaagcgaaggtgggagctttgtttccttaggtgcattcagtatctttgtgtgaatttatttgacaaactgactaccataa
gi|14 : tattgtaagacgtatttaattttcgtttttggatttaaatttcgttgctttcgtgtctgaatagaaaacaacacgaaatgaaatccaacaagatgaaatatctttacttcagtgttagaaatgtgtgtctctgtttTATTGGTAA-TCCATTTATTA-G-A-TAA-TATATTT-TGTCA-GTAC------CAT------tt
gi|15 : aaacatttattggacttatatttctgtcctgtgaaattaaggtacatatatatgtagatgtatctaaatttttgttaaatatattatgttcttttcatatctatgtgaaaacaaaatcaaatccaacaagaatttttaaatttcaggaaatattgtcacagttatttctgtATTCA-GAAAAATT-----GA-TATTAAA---ACAG--CACGGGTT---A---TT-CTTAA------AC---------A-------------CTTACTCAATAAA-AT-C----------G--------GG-GGA-AAT---CG----TATTAC--AACTAACTGATCATGA-AG-A-CA-GAGC-G-TTTGATA-TGC--CGCTGAG-ATG----AAACC--CGT-CCGCA-CA--------AATGGG-A-TTTTTA-TG--A-CAC--CCAAAGAT-TCACACATAC-ACCCTGTA-AGCATGCA-CG--T--CCGT---C--T-TAG-GATGA-TAAGACCCCTGAGCTGCA----------TACC-----A--CACCA-TGAGTTTGTTTTactggttgctatggtatttcttatgagtagatgtaacttgtattttgttgtgttaat
gi|16 : TATTCGTCG-TGCATTTACA--T-A-TAA-CATATTT-CGCCA-GTAC------TGT------A--AT----------tcacaata
gi|17 : taaactgacgtcatatttcagtacacatatatggtttcgtgttggactttcgtgttttggatgaaacagcgaaatcaactccaacacggagttttaatttctgaaaatctttagaaatttatatctttgtTTCGTAG-TCCATGTCTC--G-AATAA-CGTATTTTCGCCA-ATAC------TGT------C--AT----------C-----------------ATT-------------------GT------------------A--------------------T------AAC-------GCA--TTGCTG-TATTAA--AAA--------------------------------------AACAGG-ACAGTT---CATATT---T-GGACAGTAACA-CGA-CACGGGTGGCAA--GTTATAAACGTGTT-CGGTAT-tgtcacaactgagtagatgtactatgcatgtgcacgcgtga
gi|19 : agaaatatctttacttcgtgttagaaatgtgttgtctcttgttcGTGA-TACTATTCCTGAACCGCA----------TACA-----A--CACCA-TGAATTTGTTTTtttggagaaattacgctggcaacaaaacaat
gi|2 : atTATTCATAG-ACTTTGTATA--G-A-TAG-CATATCT-TTCCA-GTAC------CGTAATCGAC--AC----------C-----------------ACTTTATTCCCTAAGAGTAGATGT------------------ATT------------------C------C-C-------TCACATTGATG-TGTTAT--GAATG----GT-TGC---T----------------AT-CAAAACAGT-A-G--T--TCACATT---T-AGACACAAACT-CGA-TATGGGT-GTA----------------T-CG-TTT-AAATCA-G--TGGT-------------------ACAA--T-C--------A---TT-TTAAGGT----ACATGT-----A-------------C---------AAA-TT-CGACAAAGACGG--------GG-G-A-TAT---CA----GATTAC--AATTAACTCCTCACGT-AG-A-CA-GCGT-GTTTTGATG-TGC--CGCTGGA-AAA----AAACCTACGT-CCGTT-CAAAAT-T-T-ATGTC-A-TTTTTG------------CTGTGTAT-T--CAAATGC-ACCATGCA-AGTATCCA-CGCTC--T--T---C--C-TCA-GACTA-TACGACCCCTGAACCGCA----------TGCA-----A--CACCA-ATAATTTGTTTTtcacaatgtatttcaatttactgttaatcgtgcggtcaaataaacaagttgaacgttataacgtcataattacaaagcacgcgtgacgttgcgctacacgtaaacaataacgcgccaaataaataaacaattcttacacatatatctaactg
gi|21 : aacatatttaatttcgtgttggattaaatttccgcatattcgcgtctggaagaagacagcgatattaaatgaaaatatgtgtttctatCATGTA-ATTATGCA-CG--T--CCAT---C--T-TCA-GGTGA-TATGACTCCTAGGCCGCA----------TAAC-----A--TACCA-TGAATTTGTTTTccccaatagatgcatacgactgatggtctttcgtacggctggtgtgtaaaatactgttcgtattcaaaagctatcttatagcgaccccaagaacatcagataaggctttgggcatcaactctgaatcaacaggtcattcttgacaaacggaatacaaaataatttaaacattttacatatacatgtaatgacacaagcgaacacggattaccggataataatttgttgtggtgt
gi|22 : TATTTGTAGGTCC-TGTATA--G-A-TA----TATTT-CACAACGTAC------CGT------TTAAT----------CGACTCC-----------ATT-------------------GTCTATGTAAGAGTAGTGTGA--------------------T------C-C-------A-ACGTTCTTG-TGT-AA--GAATG----GT-TACCCCT----------------ATTCAAAACAAT-ACAGTG--CCATGTT---TCGGACGCTAACT-CGATCATGGtcacaaaaaattaaatttacctttaaccgtgtatggtcaaatgcatatgactgatgtgcttttgtatggcggggggtggggatgggtgtgtgtgtgttaaaaattgtttgta
gi|23 : tA-AAAAG-CTTACAATGTGAATTAA-GAATGA-T-----TACTACGAAA---ATA---T-ATAGTC---A---TG-TCAAA------GC---------A-------------CT--------AAA-CT-T----------GACAAAGCCAG-A-A-TATA--CA----GATTAC--AACTA--TTCTCATGC-AGCA-CACGTGC-A-TTCTATT-TGC--C
gi|25 : aatgA-AACAA-GTG-TAATGT-AATTAA-GAATGATT-----T--TTTTAAAGATACGA--A-CTCGGC---A----------------------------------------------------AAA-TA-C----------G--------GG-A-A-GATATATT----GATTAC--A------TGCTC---T-A-----A-GTGT-G-GCTGATA-TGC--CGCTGAG-ACG----AAATC--TGcacgga
gi|3 : aATGCTTA--G-A-TAA-CACATTT-TGCCT-GTGC------CGT------A--AT----------
gi|3 : atacaagaaactaaaaatacattactgtcgtactagattaaatttcgtaatgtttgcatcggaaaagaaacaccgaaattaaatccaaaacgaattttatttacaaaaactttttatttcaattttaaaaatatgtgtcccagttgttggtaataccggtatT-------------------GT------------------A--------------------C------C-C-------ACGATTCGTGG-TGTGAA--GAATG----AT-TAC---T----------------AT-CAACACAAT-ACAGTGA-CCATATT---T-AGACACTGATT-CGA-CACGGGT-GCAA--GCTA-AATAG-GTT-CGATGT-AATTGA-AAATAA-T-----AACTATCAAA---ACAGAAT--TGGCC---A---CT-TTAAG------ATAGTAACTCGA-------------C---------AAAGTT-T----------G--------GA-A-A-GAT---CG----GATTAC--AGCTAACAGCTCATGC-AG-A-GA-GAAC-G-TTTGATA-TGC--CGCTTAGTATAG---AAACC--CAT-CCGTA-CAAGCT-T-CAATGTCAA-TTTGTA-TG--G-CAC--CCAAAGAT-C--CACATGC-ACTCTATG-GGTATCCA---------------------------------AACTCCTAAGCCGCA----------TACC-----A--CACnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncttaaaagtagatgtacccacgattcgtggtgtgaagaatgattactatcaacacaatacagtgaccatatttagacactgattcgacacgggtgcaagctaaataggttcgatgtaattgaaaataataactatcaaaacagaattggccactttaagatagtaactcgacaaagtttggaaagatcggattacagctaacagctcatgcagagagaacgtttgatatgccgcttagtatagaaacccatccgtacaagcttcaatgtcaatttgtatggcacccaaagatccacatgcactctatgggtatccaaactcctaagccgcataccacac
gi|4 : atacaagaaactaaaaatacattactgtcgtactagattaaatttcgtaatgtttgcatcggaaaagaaacaccgaaattaaatccaaaacgaattttatttacaaaaactttttatttcaattttaaaaatatgtgtcccagttgttggtaataccggtatatgcttagataacacattttgcctgtgccgtaatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncttaaaagtagaTATTCGTCG-TCCGTGTATT--G-A-TAA-CATATTT-CGCCA-GTGCGGTAATTGT------C--AT----------CTTTATTCCTTAGGAGTAAAT-------------------GT------------------A--------------------C------C-C-------CAACTTTGTTG-CGTTGA--GAATG----AA-TAC---T----------------AC-CAAAACAGA-ACAATT--C---ATTCAAT-AAACA--AACT-CCA-CACGGAT-GCAA--ATTT-AAAAA-GTT-CGTTGT-AATTAA-GA--------------TATCAA------------CTCG--------------AAA------A----------A-----------------------AAA-TT-T----------G--------GG-G-G-AAT---CA----AATTAA--AGCTAACCACTCATGTTAG-ATCG-GCGCCG-TTTGAT-------CACTG----TA-----------TGTGCCGTG---ATAT-T-TAATGCC-A-ATTTTA-TG--A-CAC--CCGTGGAT-T--CACAT-C-ACCATGTACGGTATCCA--G--C--T--TATTC--T-TCA-GGTGA-TACGACTCCTGAGCCGTG----------TACC-----A--CACCA-TAAGTTTTTT
gi|5 : ggaatatttaattttgtgttatattaaatttcgttactttcctgtttggaaaaaaataatgaaattaaatccaacacaaatttatgtttcagaaagtctttattttgatactagaaatctgtgtctttg------AC---------A-------------C---------AAA-GTGCTG--------G--------GG-A-A-TATA--CG----GATTAC--ACATAAGCGTACATAT-AC-A-TA-TCAC-A-TTTGGTA-TGC--CGTTGCT-TTATTAGAAACT--TAT-CCGTGTCACAAT-A--AATGTT-A-TCTTTA-AG--G-CAC--CAGTAGAT-T--TACAAGC-ACTATGTA-AGTATCCA-TG--C--C------C--T-TCC-AGTGA-CACGACATCTAAGCTGCA----------TACCATACTA--TACCA-TATATTTATTTTcacagtagattatgcatacgactgatgttccttttgtacggc
gi|6 : tTATCCGTAT-TCTATGTATT--ATA-TAA-TATATCT-CTCCA-ATAC------CAT------A--ATGTATAGTATTC-----------------GTTAAGA---------------GT------------------A--------------------CAGGACCC-C-------TCACATTGTTG-TGTTAA--GAACG----AT-TAC---T----------------GT-CAAAACAGT-ACA-TT--TCAAATT---T-CGACACTTACT-CG-----------------CTA-AAAAG-GTT-CGATGT-AATTAA-AAACGA-T-----TACTATCAAA---ACAG--TACTGATC---A---TT-TTGAT------AT---------A-------------C---------TAG-TT------------------------A-A----------------CAC--AGCAAA--GTTGAGGA-AG-ATCA-GCGC-G-TTTAAAG-TGC--CGCTGAG-GCA----AAATA--CAT-CCGTG-CAAAAT-T-TGTTGTG-A-TTTTTA-CG--A-CAT--CCGTGAAT-T--TTTATGC-ACC----A-AATA---------------T---C--T-TCA-GCCAA-TACTAATCCCGAGCCGCA----------TATC-----A--T-CTACTGAATTTGTTTTcaatttatttacaccgtacagtcaaatgacggatgacgctcttccatacacactgaaaatcaaattgtttatagttgttttgttgcaggtcaaggaaatatttgtctgatgcgcctaatgaacatcgagtagggcatgggcatcagccttgtttctacaggtacctgctgattttgttgacagatggattacaataaaaataaaaaaaaaacatcattatgacttgggtaaaataatttaataaccaaagtgttgaccgattatcaaaaagtgatttgctttgtaatagatgataacatcggtgtgctaaattcatgaattgcgtgtgtatcgtaa
gi|7 : tttcaaaaaaatatttatttcagtgttagaatcctgtgcctctgtTATTCGCTG-TCCATTTATA--G-A-TAA-CATATTT-CGCCA-GTGC------AGTGAT---C--AT----------C-----------------ACTATT----------------GT------------------A--------------------T------T-CCTTATGAGCAGA--GTTG-TGTTGATAAAATACAGAAG-TAC---TGAGGTGCAAATGTAAGAT-CAAAAC--------TT--TCATTTT---A-AAACCCTAACT-CGA-CACAGTT-A-AA--ATTG-AAAAA-ATT-CATTGT-AATTAA-GAATGA-T-----TACTATCAAA---ACAG--CACACATC---A---TT-TTAttagaatagaatatacaatttaccattaatcgaacggttttaagcagatgtgtatggctatg
gi|8 : aaaactgttagcagtgtcacttccttgtagagtgctatagaaaaaacatccattgaacacataaagcagtacacgtacattcaagatactgtagatgtatctaaatttcatgttggattaaattccattatttttgtgtctggggaaaaaacaatgaaactaattcctacataaattttcactttcagaaaatctttattctaatgttagaaatctctgtgtctcaatT--TCAAATT---T-CGACACTTACT-CGC-CACAGGT-ACAT--GCTG-AAAAG-GTT-CGATGT-AATTAA-GAAT------------TATTA-------------CTGACC---G---CT-TTAAG------AT---------A-------------CTAACTCAACAAA-AT-C----------G--------GGGA-A-GAT---CG----CATCAC--AGCTAACGGCTCATGC-AG-T-CA-GCGC-G-TTTGATG-TGCCGCGCTGAG-GTA----AAATC--CGT-CCGTG-CAAAATGTGTAGTG---ATTTTTTA-TG--A-CAT--CCATGGAT-T--CCCCTGC-ACC----A-AGTA---------------T---C--T-TCA-GTCGA-TACGAATCTCGAGCCGCATATATACATGTACC-----A--CTTAA-TGACTTTGTTTtatttaattcctaccaaatcagacaacaa
gi|9 : attcaacgaaaattcatcttgctatcgtacgtagtaaattagcatacttcttggtacaacgtatcaacagacaagctgcatttgccctttgagatgtaggaaagaaagatgtgatcgcttaatcaatgggttgttgatgtattttaatatttctatctttgtgctaTATTCGTAG-TCCATGTCTC--G-A-TAA-CATATTT-CACCA-ATAC------TGT------C--AT----------C-----------------ACT-------------------GT------------------A--------------------C------C-C-------ACACTTTGTTG-TATTAA--GAATG----AT-TGC---T----------------GT-CAAAACAGG-ACGGTTAATCGTTTT---T-GGACACTAACA-CGA-CACAGGT-GCAA--GTTA-AAAGG-GTT-CGGTGT-AATTAA-GAATGATTATATGTACTATCAAA---ACAG--T-CTGGTC---A---TT-TTAAG------AC---------A-------------C---------AAA-GC-C----------G--------GG-A-A-GGT---CG----GATTAC--AGCTATCTGCTCATGC-AG-A-CA-GTGC-G-TTTGATG-TGC--CATGGAG-ACA----TACCC--CGT-CCCTG-CAAAAT-T-TAATGTC-ATTTTTTA-TG--A-CACTACCGTGGAT-T--CACATGC-ACCCTGTA-AGTATCCA-CA--CTTT--T---C--T-TCA-GGTGA-TATGACTCCTGAGCCGCA----------TACA-----A--CACCA-TGAATTTGTTTT
blockSeqs : G CTG T A A T C GGTAATT AATCGACACCACTTTATTCCCTAAGAGTAGATGTATTCCCT CT C TA CAGAAGTACTGAGGTGCAAATGTAAG T GACGGTTAATC CAA CG C A T GAAAAAG AT T A A G A TTATATGTAC GAT GACTGTTCGGTATTATAAGTTCTCGACAAAGCCAGGGTCGACAAAGCCAG G G AG ATA G CA G TAT T C T C C T AC CG TTATTAG TA G CAAAATGTGTA TCA T TT GA C TA C CA G T A C C CCGCTGT TA G G C T TATATACATG ATACT TT C
blockSeqs : . TA . . . T . T TTAATCGACTCCATTGTCTATGTAAGAGTAGTGTGATCCA CA . . GTTACCCCT . GGACAGGTTC . A C . T GGCAAG C . . A . . TTTG . TCATTTTAAGGTACATGTACAAATTCGACAAAGACGG . . G A G . A ACT . . T . . . T . TATAG . . TCACATTCA TC T T . . . . . A . A . C CGTCCGT . . . . C . . . .
blockSeqs : . A . . . . . C AATGTATAGTATTCGTTAAGAGTACAGGACCCCT CG . . ATTACT . TACAGTGACC . A G . . GGCAG A . . G . . CTTA . AATTGGCCACTTTAAGATAGTAACTCGACAAAGTTTG . . A A T . A ACT . . . . . . A . AAA . . CAAGCTTCA GG . T . . . . . A . C . C CGCTCTT . . . . T . . . .
blockSeqs : . C . . . . . T CATCTTTATTCCTTAGGAGTAAATGTACCCC AT . . ATTACT . TACAGTGCC . G G . . GCAAG A . . G . . TTAC . CACGGGTTATTCTTAAACACTTACTCAATAAAATCG . . A . G . A ACA . . . . . . G . ATG . . TCACAATAA TC . T . . . . . G . A . G CGTCCAT . . . . C . . . .
blockSeqs : . A . . . . . T GATCATCACTATTGTATTCCTTATGAG CT . . GTTGCT . TACGGTTT . G C . . GCAAA A . . A . . TTGA . TATAGTCATGTCAAAGCACTAAACTTGACAAAGCC . . T . G . G ACC . . . . . . T . AAA . . CAAAATTTG CC . T . . . . . G . A . C GCTTATT . . . . T . . . .
blockSeqs : . A . . . . . C CCATTTCATTTGTATACG CA . . ATTACT . GACAGTTC . A C . . ACATG A . . A . . TTAC . CTGACCGCTTTAAGATACTAACTCAACAAAATCG . . T . G . G AGC . . . . . . A . ACG . . CAAAATTTA TT . T . . . . . G . C . G CACTTTT . . . . T . . . .
blockSeqs : . A . . . . . C CATCATTGTATAACG GA . . AATACT . AACAATTC . A C . . GCAAG T . . A . . TAAC . CATTGCCAATATTTAAACTCAAAAAGTCG . . G . G . C ACG . . . . . . A . GCA . . CAAAATTT TG . A . . . . . G . A . C CACCT . . . . T . . . .
blockSeqs : . T . . . . . C CATCACTGTACCCA CT . . ATTACT . TACATTTC . A C . . AAAA A . . T . . TTAC . CTCAGGTCAATTTAAGACACTAACTCG . . G . A . G TCT . . . . . . A . GTA . . ATATTTA TC . C . . . . . G . A . C TTTT . . . . A . . . .
blockSeqs : . T . . . . . C . . . ATTGCT . AAATTT . C C . . GTA G . . A . . TTAC . TCTGGTCATTTTAAGACACAAAGCCG . . A . G . G T . . . . . . G . ACA . . CAA C . T . . . . . G . C . C TGCC . . . . T . . . .
blockSeqs : . A . . . . . A . . . . . TAGTTC . A C . . . G . . T . . TTT . TACTGATCATTTTGATATACTAGTT . . T . C . G T . . . . . . G . TA . . C . . T . . . . . . . . . C T . . . . T . . . .
blockSeqs : C . . . . . T . . . TTTC . C C . . . A . . A . . T . CTCGAAAAAAAATTTG . . G . G . . A . . . . . . G . AG . . . . . . . . . . . . . . . . T . . . . T . . . .
blockSeqs : . G . . . . . . G . . . . ACTCGGCAAAATACG . . G . . . . . . . . . . . . . TA . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . .
blockSeqCons : ATTACT************************ NACAGTTC**** G**** CGCCT**********
originalCons : TATTCGTAG-TCCATGTATN--G-A-TAA-CATATTT-CGCCA-GTAC------CGT------C--AT----------C-----------------ACT-------------------GT------------------A--------------------C------C-C-------GCACNTTGTTG-TGTTAA--GAATG----AT-TAC---T----------------AT-CAAAACAGN-ACGGTT--TCATATT---T-AGACACTAACT-CGA-CACGGGT-GCAA--GTTA-AAAAG-GTT-CGATGT-AATTAA-GAATGATT-----TACTATCAAA---ACAG--T-CTGGTC---A---TT-TTAAG------AC---------A-------------C---------AAA-NT-C----------G--------GG-A-A-GAT---CG----GATTAC--AGCTAACTGCTCATGC-AG-A-CA-GCGC-G-TTTGATN-TGC--CGCTGAG-ATA----AAACC--CGT-CCGTG-CAAAAT-T-TAATGTC-A-TTTTTA-TG--A-CAC--CCGTGGAT-T--CACATGC-ACCATGTA-AGTATCCA-CG--C--C--T---C--T-TCA-GGTGA-TACGACTCCTGAGCCGCA----------TACC-----A--CACCA-TGAATTTGTTTT
finalCons : TATTCGTAG-TCCATGTATN--G-A-TAA-CATATTT-CGCCA-GTAC------CGT------C--AT----------C-----------------ACT-------------------GT------------------A--------------------C------C-C-------GCACNTTGTTG-TGTTAA--GAATGATTACT------------------------AT-CAAAACAGNACAGTTC----ATATT---T-AGACACTAACT-CGA-CACGGGT-GCAA--GTTA-AAAAG-GTT-CGATGT-AATTAA-GAATGATT-----TACTATCAAA---ACAG--T-CTGGTC---A---TT-TTAAG------AC---------A-------------C---------AAA-NT-C----------G--------GG-A-A-GAT---CGG----ATTAC--AGCTAACTGCTCATGC-AG-A-CA-GCGC-G-TTTGATN-TGC--CGCTGAG-ATA----AAACC--CGT-CCGTG-CAAAAT-T-TAATGTC-A-TTTTTA-TG--A-CAC--CCGTGGAT-T--CACATGC-ACCATGTA-AGTATCCACGCCT----------C--T-TCA-GGTGA-TACGACTCCTGAGCCGCA----------TACC-----A--CACCA-TGAATTTGTTTT
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|18 ): ATATTACGTACGAATAGTTAATTTCGTGTTGATTAAATACGTTTTTGCGTACTGGAGAAACGAGGAAACTAATACAATCGATGTTTACTTCTCATAATTTTGGTTTGTTTTATATGTTTCTGTTATCGTCGTCATTTATACATAACATAAATCCACCAGTGATGCGTAATGGTCGAATTGAATTTCTAATGAGTGATGTTCTG
Unaligned ( gi|20 ): AAATACTAAAAAAGTATCTAATATTGTGTTATATTATATTTCGTTATCTTGGTGTCTGTGAGAAAAGTAAATTCAATATAACACGAATTTCTTACTTAAAAAAACTTTAGTTTAACAAAATTTTAACTTTAAAAAATCTGTAATGTTAGAATCATGTGTCTGTTATTCTTCGTCCATTTATATAGCACATT
Unaligned ( gi|24 ): TACTGTAGATGTATTTAATTTCATGTTGGATTAAATATCATTATTTTCATGTTTGGGAGAAGACAACAAAATTAACACAAATTTATGATTTCAGAAATCTGTATTTTAATATTAGAAATCTGAA
Unaligned ( gi|26 ): AGAAAACAACGAAATTAAATCCAACACGAGTTTTATTTTCAAGAAATCTTTATTTCAGTGTTAGAAATGTGTGTTTCTGTTATTCGTAGTCATGTCTCGAT
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 4444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 222222222222222222222222222222 2222222222 666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 111 11111111 111111111111 444444444444444 1111111111
lowQualScore : 3 888 3 3 3 6 3 9999999 7777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 77 0 3 44 444444444444444444444444444444 3 777 0 3 77 555 44 44 1 3 6 0 99999 11 33 33 2 4 2 2 9999999999 555 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 2 2 55 000 66666 44 1 666 3 3 6 3 3 3 77 33 11111111 44 3 444444444444 555 6 44 44 3 44 0 3 44 0 1 3 7 3 1 444444444444444 44 3 3 2 2 2222222222 77777 44 3
lowQualScore : . ... . . . . . ....... ....................................................................................................... .. . . .. .............................. . ... . . .. ... .. .. . . . . ..... .. .. .. . . . . .......... ... ............................................................................................. . . .. ... ..... .. . ... . . . . . . .. .. ........ .. . ............ ... . .. .. . .. . . .. . . . . . . ............... .. . . . . .......... ..... .. .
lowQualScore : 6 999 3 3 3 7 3 7777777 2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 22 8 6 66 222222222222222222222222222222 3 777 4 1 33 444 22 44 5 1 2 2 99999 55 00 44 9 9 9 9 9999999999 000 888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 9 9 22 777 11111 22 4 888 1 1 2 1 1 1 11 99 55555555 22 3 666666666666 333 7 00 66 3 66 7 3 66 4 0 3 8 1 5 000000000000000 22 1 1 9 1 5555555555 11111 22 3
consensus : TATTCGTAG-TCCATGTATN--G-A-TAA-CATATTT-CGCCA-GTAC------CGT------C--AT----------C-----------------ACT-------------------GT--------------------A--C------CC-------GCACNTTGTTG-TGTTAA--GAATG----AT-TAC---T----------------AT-CAAAACAGT-ACAG-T--T---CATATT--T-AGACACTAACT-CGA-CACGGGT-G--CAAGTTA-AAAAG-GTT-CGATGT-AATTAA-GAATGATT-----TACTATCAAA---ACAG--T-CTGGTC---A---TT-TTAAG------AC---------A-------------C---------AAA-NT-C----------G--------GG-A-A-GAT---CG----GATTAC--AGCTAACTGCTCATGC-AG-A-CA-GCGC-G-TTTGATN-TGC--CGCTGAG-ATA----AAACC--CGT-CCGTG-CAAAAT-T-TAATGTC-A-TTTTTA-TG--A-CAC--CCGTGGAT-T--CACATGC-ACCATGTA-AGTATCCA-CG--C--C--T---C--T-TCA-GGTGA-TACGACTCCTGAGCCGCA----------TACC-----A--CACCA-TGAATTTGTTTT
Reference ( family-78 ) : TATTCGTAG-TCCATGTATN--G-A-TAA-CATATTT-CGCCA-GTAC------CGT------C--AT----------C-----------------ACT-------------------GT--------------------A--C------CC-------GCACNTTGTTG-TGTTAA--GAATG----AT-TAC---T----------------AT-CAAAACAGN-ACAG-T--T---CATATT--T-AGACACTAACT-CGA-CACGGGT-G--CAAGTTA-AAAAG-GTT-CGATGT-AATTAA-GAATGATT-----TACTATCAAA---ACAG--T-CTGGTC---A---TT-TTAAG------AC---------A-------------C---------AAA-NT-C----------G--------GG-A-A-GAT---CG----GATTAC--AGCTAACTGCTCATGC-AG-A-CA-GCGC-G-TTTGATN-TGC--CGCTGAG-ATA----AAACC--CGT-CCGTG-CAAAAT-T-TAATGTC-A-TTTTTA-TG--A-CAC--CCGTGGAT-T--CACATGC-ACCATGTA-AGTATCCA-CG--C--C--T---C--T-TCA-GGTGA-TACGACTCCTGAGCCGCA----------TACC-----A--CACCA-TGAATTTGTTTT
gi|1 : ATTCGACG-TCCATTTATA--G-A-ATA-CATACTT-CGCCA-GTAC------TGC------A--ATTGTCTG----C-----------------ACT-------------------GTATTCCCTATGAGTAAATTTAA--C------CC-------GCACTTTCATG-TGTTAA--TATTGC---ATGTA----T----------------AT-TTGA-----------T--T---GATATA--T-TG-CA--AAAT---A-CTCTGGT-G--TAAATGA-CAAA--GTT-CA-----AAGTAG-GAATGA-T-----TACTTTCAAA---TCAG--T-ACGGT--------TTATTAAA------AC---------G-------------C---------TAA-CT-T----------G--------AC-A-A-GGT---CGATGTGATTA
gi|1 : ggattatatttcgttattttcgtgtctgggagaaatcacagaaattaatcctacacgaatctttaatttttagatttttaaattctaatgctacataTAG--GAATG----AT-TAC---T----------------TT-CAAATCAGT-ACGG-T--T-----TATT--A-AAACGCTAACT-TGA-CA--------------------AG-GT--CGATGT-GATTAA-TAATGATT-----TG-TACCAAA---ACAG--GACTGTTCGGTA---TT-ATAAGTTCTCGAC---------AAAGCCAGGGTCGAC---------AAA-GC-CA---------G--------GG-A-A-GGT---TG----GGTTAC--GGCTAACTGCTCGTGC-AG-A-CA-GCGC-G-TGTGATT-TGA--CTCTGAG-ATG----AAACT--CAT-CCGTG-CAAGAT-T-TAATGTC-A--CTTTA-AG--A-CAC--CGATACAT-T--CCGATGC-A-----TA-AGTAT--A---------------------CA-GGTCA-TCCGGCACCCAGGCCGCA----------TAGC-----A--CGCCA-CGAataatgatttgtaccaaaacaggactgttcggtattataagttctcgacaaagccagggtcgacaaagccagggaaggttgggttacggctaactgctcgtgcagacagcgcgtgtgatttgactctgagatgaaactcatccgtgcaagatttaatgtcactttaagacaccgatacattccgatgcataagtatacaggtcatccggcacccaggccgcatagcacgccacgattggggtatcaagtcacctttaactggattagagtgttacatgtaaatagttggtttgctgcagattaataacatatttgtcctggtatgtcctgatatgtcgccatgaacatcgagcagggtgtgggcaacaatctttttttctacaagtctttgaaaatgctacctacacccggaatacaaaataattcgaaattataatgacgtggataaaagcaatgtgattaccctgcgtatacagatcaccgagcaataaattattgtggattaggtggtaataacagatacataaacggcgaatgtatagtaatg
gi|10 : ggattatatttcgttattttcgtgtctgggagaaatcacagaaattaatcctacacgaatctttaatttttagatttttaaattctaatgctacataattcgacgtccatttatagaatacatacttcgccagtactgcaattgtctgcactgtattccctatgagtaaatttaacccgcactttcatgtgttaatattgcatgtatatttgattgatatattgcaaaatactctggtgtaaatgacaaagttcaaagATTAAAGAATAACT-----TA---TCAAA---ACAG--C-ATTGCC---AATATT-TAAAC------TC---------A-------------A---------AAA-GT-C----------G--------GG-A-AAGAT---CG------TTATCAAGTTATATGTCCATAC-CG-A-CG-GCGC-G-TTTGATACTGT--CGTTGAG--TA----AAACC--CGT-CCGTG----------------C-A-TTTTTATTG--ACCAC--CCACCGATCT--CACATGCTACCATGTA-GGT-TCCACCG--C--TG-T---C--TGTCAGGGTGACCAAAAC-CCTAAGCTGCA----------TATT-----GTTCACAA-TGAttggggtatcaagtcacctttaactggattagagtgttacatgtaaatagttggtttgctgcagattaataacatatttgtcctggtatgtcctgatatgtcgccatgaacatcgagcagggtgtgggcaacaatctttttttctacaagtctttgaaaatgctacctacacccggaatacaaaataattcgaaattataatgacgtggataaaagcaatgtgattaccctgcgtatacagatcaccgagcaataaattattgtggattaggtggtaataacagatacataaacggcgaatgtatagtaatg
gi|11 : T-------------------GT--------------------A--C------AC-------GCACTTTGAT-------------TG----AT-TAC---T----------------AT-CAAAGCA-T-A-AA-T--T---TATAAT--T-AGAAACTAACT-CCA-TAGGGGT-GAAAAAGTTC-AAAAG-GCC-CGATGT-AATTAG-GAATGA-T-----TACTATCAAA---ACAGC-T-CAGGTC---A---AT-TTAAG------AC---------A-------------C---------TAA-CT-C----------G--------AC-A-A-AAT---CA----G---------------GGGCATGC-AT-A-CA-AAGC-G-TTTGATT-TGC--CGCTCAG-AAA----AAACC--TGT-TCGTG-C----------------------CA-TG--A-TAC--CCGTGA------CGCAT-------TGTA-AGTATCGA-T---T--T--T---A--T-TCA-GGTGA-TACGACTTCTGAGTCACA----------TACT-----G--CAC-------TTTATTTTtcagtcttaccgttaaactgtacggtcacatgctacgtactgattctcgtacggaggaaggtgggggagggtgtttgtgttgtttaatgttgttcattagtatttgcaagatagattaaggaatgtttgtctcatgaacatcgagcagggcgttccacgggcatcaac
gi|12 : tccgtacgtaaattctacctcattatatcccttatgagtaga--CACTGAG-A-G----AAACC--CAT-TTATG-TCACAT-T-CAATGTC-A-TTTTT--TGGAA-AAC--CCG--------------AC-AATATGTA-AGAATCTA-CA--C--C--T---CTAT-TCA-TGTGA-TACGA--CCTGGATTGCG----------TGCC-----tc
gi|13 : TTCGTA--TCCATGTCTCTGA-A-TAAACGTATTTTCGCCA-ATAC------TGT------CC-ATTT--------C-----------------ATTT------------------GT--------------------A--T------AC-------GCA--TTGCTGCTATTAA--AAA--------------------------------------AACAGGGACAGGT--T---CATATT--T-GGACAGTAACAACGATCACGGGT-G--GCAGTTA-AAAGT-GTT-CGGTAT-tttcaatttacttttaactgtaaggtcacgtggctgctggttttcgtacaactgggggaaggggagtaaataaattgttttatgtcgctattttgtagcaagtcgatggaatctgtcctggtgtgccatttggacattgagcaaagcgaaggtgggagctttgtttccttaggtgcattcagtatctttgtgtgaatttatttgacaaactgactaccataa
gi|14 : tattgtaagacgtatttaattttcgtttttggatttaaatttcgttgctttcgtgtctgaatagaaaacaacacgaaatgaaatccaacaagatgaaatatctttacttcagtgttagaaatgtgtgtctctgtttTATTGGTAA-TCCATTTATTA-G-A-TAA-TATATTT-TGTCA-GTAC------CAT------tt
gi|15 : aaacatttattggacttatatttctgtcctgtgaaattaaggtacatatatatgtagatgtatctaaatttttgttaaatatattatgttcttttcatatctatgtgaaaacaaaatcaaatccaacaagaatttttaaatttcaggaaatattgtcacagttatttctgtATTCA-GAAAAATT-----GA-TATTAAA---ACAG--CACGGGTT---A---TT-CTTAA------AC---------A-------------CTTACTCAATAAA-AT-C----------G--------GG-GGA-AAT---CG----TATTAC--AACTAACTGATCATGA-AG-A-CA-GAGC-G-TTTGATA-TGC--CGCTGAG-ATG----AAACC--CGT-CCGCA-CA--------AATGGG-A-TTTTTA-TG--A-CAC--CCAAAGAT-TCACACATAC-ACCCTGTA-AGCATGCA-CG--T--CCGT---C--T-TAG-GATGA-TAAGACCCCTGAGCTGCA----------TACC-----A--CACCA-TGAGTTTGTTTTactggttgctatggtatttcttatgagtagatgtaacttgtattttgttgtgttaat
gi|16 : TATTCGTCG-TGCATTTACA--T-A-TAA-CATATTT-CGCCA-GTAC------TGT------A--AT----------tcacaata
gi|17 : taaactgacgtcatatttcagtacacatatatggtttcgtgttggactttcgtgttttggatgaaacagcgaaatcaactccaacacggagttttaatttctgaaaatctttagaaatttatatctttgtTTCGTAG-TCCATGTCTC--G-AATAA-CGTATTTTCGCCA-ATAC------TGT------C--AT----------C-----------------ATT-------------------GT--------------------A--TA-----AC-------GCA--TTGCTG-TATTAA--A--------------------------------------AAAACAGG-ACAG-T--T---CATATT--T-GGACAGTAACA-CGA-CACGGGTGG--CAAGTTATAAACGTGTT-CGGTAT-tgtcacaactgagtagatgtactatgcatgtgcacgcgtga
gi|19 : agaaatatctttacttcgtgttagaaatgtgttgtctcttgttcGTGA-TACTATTCCTGAACCGCA----------TACA-----A--CACCA-TGAATTTGTTTTtttggagaaattacgctggcaacaaaacaat
gi|2 : atTATTCATAG-ACTTTGTATA--G-A-TAG-CATATCT-TTCCA-GTAC------CGTAATCGAC--AC----------C-----------------ACTTTATTCCCTAAGAGTAGATGT--------------------ATTC------CC-------TCACATTGATG-TGTTAT--GAATG----GT-TGC---T----------------AT-CAAAACAGT---AG-T--T---CACATT--T-AGACACAAACT-CGA-TATGGGT-G--TA--------------T-CG-TTT-AAATCA-G--TGGT-------------------ACAA--T-C--------A---TT-TTAAGGT----ACATGT-----A-------------C---------AAA-TT-CGACAAAGACGG--------GG-G-A-TAT---CA----GATTAC--AATTAACTCCTCACGT-AG-A-CA-GCGT-GTTTTGATG-TGC--CGCTGGA-AAA----AAACCTACGT-CCGTT-CAAAAT-T-T-ATGTC-A-TTTTTG------------CTGTGTAT-T--CAAATGC-ACCATGCA-AGTATCCA-CGCTC--T--T---C--C-TCA-GACTA-TACGACCCCTGAACCGCA----------TGCA-----A--CACCA-ATAATTTGTTTTtcacaatgtatttcaatttactgttaatcgtgcggtcaaataaacaagttgaacgttataacgtcataattacaaagcacgcgtgacgttgcgctacacgtaaacaataacgcgccaaataaataaacaattcttacacatatatctaactg
gi|21 : aacatatttaatttcgtgttggattaaatttccgcatattcgcgtctggaagaagacagcgatattaaatgaaaatatgtgtttctatCATGTA-ATTATGCA-CG--T--CCAT---C--T-TCA-GGTGA-TATGACTCCTAGGCCGCA----------TAAC-----A--TACCA-TGAATTTGTTTTccccaatagatgcatacgactgatggtctttcgtacggctggtgtgtaaaatactgttcgtattcaaaagctatcttatagcgaccccaagaacatcagataaggctttgggcatcaactctgaatcaacaggtcattcttgacaaacggaatacaaaataatttaaacattttacatatacatgtaatgacacaagcgaacacggattaccggataataatttgttgtggtgt
gi|22 : TATTTGTAGGTCC-TGTATA--G-A-TA----TATTT-CACAACGTAC------CGT------TTAAT----------CGACTCC-----------ATT-------------------GTCTATGTAAGAGTAGTGTG--A--T------CC-------A-ACGTTCTTG-TGT-AA--GAATG----GT-TACCCCT----------------ATTCAAAACAAT-ACAG-TG-C---CATGTT--TCGGACGCTAACT-CGATCATGGtcacaaaaaattaaatttacctttaaccgtgtatggtcaaatgcatatgactgatgtgcttttgtatggcggggggtggggatgggtgtgtgtgtgttaaaaattgtttgta
gi|23 : tA-AAAAG-CTTACAATGTGAATTAA-GAATGA-T-----TACTACGAAA---ATA---T-ATAGTC---A---TG-TCAAA------GC---------A-------------CT--------AAA-CT-T----------GACAAAGCCAG-A-A-TATA--CA----GATTAC--AACTA--TTCTCATGC-AGCA-CACGTGC-A-TTCTATT-TGC--C
gi|25 : aatgA-AACAA-GTG-TAATGT-AATTAA-GAATGATT-----T--TTTTAAAGATACGA--A-CTCGGC---A----------------------------------------------------AAA-TA-C----------G--------GG-A-A-GATATATT----GATTAC--A------TGCTC---T-A-----A-GTGT-G-GCTGATA-TGC--CGCTGAG-ACG----AAATC--TGcacgga
gi|3 : aATGCTTA--G-A-TAA-CACATTT-TGCCT-GTGC------CGT------A--AT----------
gi|3 : atacaagaaactaaaaatacattactgtcgtactagattaaatttcgtaatgtttgcatcggaaaagaaacaccgaaattaaatccaaaacgaattttatttacaaaaactttttatttcaattttaaaaatatgtgtcccagttgttggtaataccggtatT-------------------GT--------------------A--C------CC-------ACGATTCGTGG-TGTGAA--GAATG----AT-TAC---T----------------AT-CAACACAAT-ACAG-TGAC---CATATT--T-AGACACTGATT-CGA-CACGGGT-G--CAAGCTA-AATAG-GTT-CGATGT-AATTGA-AAATAA-T-----AACTATCAAA---ACAGAAT--TGGCC---A---CT-TTAAG------ATAGTAACTCGA-------------C---------AAAGTT-T----------G--------GA-A-A-GAT---CG----GATTAC--AGCTAACAGCTCATGC-AG-A-GA-GAAC-G-TTTGATA-TGC--CGCTTAGTATAG---AAACC--CAT-CCGTA-CAAGCT-T-CAATGTCAA-TTTGTA-TG--G-CAC--CCAAAGAT-C--CACATGC-ACTCTATG-GGTATCCA---------------------------------AACTCCTAAGCCGCA----------TACC-----A--CACnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncttaaaagtagatgtacccacgattcgtggtgtgaagaatgattactatcaacacaatacagtgaccatatttagacactgattcgacacgggtgcaagctaaataggttcgatgtaattgaaaataataactatcaaaacagaattggccactttaagatagtaactcgacaaagtttggaaagatcggattacagctaacagctcatgcagagagaacgtttgatatgccgcttagtatagaaacccatccgtacaagcttcaatgtcaatttgtatggcacccaaagatccacatgcactctatgggtatccaaactcctaagccgcataccacac
gi|4 : atacaagaaactaaaaatacattactgtcgtactagattaaatttcgtaatgtttgcatcggaaaagaaacaccgaaattaaatccaaaacgaattttatttacaaaaactttttatttcaattttaaaaatatgtgtcccagttgttggtaataccggtatatgcttagataacacattttgcctgtgccgtaatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncttaaaagtagaTATTCGTCG-TCCGTGTATT--G-A-TAA-CATATTT-CGCCA-GTGCGGTAATTGT------C--AT----------CTTTATTCCTTAGGAGTAAAT-------------------GT--------------------A--C------CC-------CAACTTTGTTG-CGTTGA--GAATG----AA-TAC---T----------------AC-CAAAACAGA-ACAA-T--T---CAT-TCAAT-AAACA--AACT-CCA-CACGGAT-G--CAAATTT-AAAAA-GTT-CGTTGT-AATTAA-GA--------------TATCAA------------CTCG--------------AAA------A----------A-----------------------AAA-TT-T----------G--------GG-G-G-AAT---CA----AATTAA--AGCTAACCACTCATGTTAG-ATCG-GCGCCG-TTTGAT-------CACTG----TA-----------TGTGCCGTG---ATAT-T-TAATGCC-A-ATTTTA-TG--A-CAC--CCGTGGAT-T--CACAT-C-ACCATGTACGGTATCCA--G--C--T--TATTC--T-TCA-GGTGA-TACGACTCCTGAGCCGTG----------TACC-----A--CACCA-TAAGTTTTTT
gi|5 : ggaatatttaattttgtgttatattaaatttcgttactttcctgtttggaaaaaaataatgaaattaaatccaacacaaatttatgtttcagaaagtctttattttgatactagaaatctgtgtctttg------AC---------A-------------C---------AAA-GTGCTG--------G--------GG-A-A-TATA--CG----GATTAC--ACATAAGCGTACATAT-AC-A-TA-TCAC-A-TTTGGTA-TGC--CGTTGCT-TTATTAGAAACT--TAT-CCGTGTCACAAT-A--AATGTT-A-TCTTTA-AG--G-CAC--CAGTAGAT-T--TACAAGC-ACTATGTA-AGTATCCA-TG--C--C------C--T-TCC-AGTGA-CACGACATCTAAGCTGCA----------TACCATACTA--TACCA-TATATTTATTTTcacagtagattatgcatacgactgatgttccttttgtacggc
gi|6 : tTATCCGTAT-TCTATGTATT--ATA-TAA-TATATCT-CTCCA-ATAC------CAT------A--ATGTATAGTATTC-----------------GTTAAGA---------------GT--------------------A--CAGGACCCC-------TCACATTGTTG-TGTTAA--GAACG----AT-TAC---T----------------GT-CAAAACAGT-ACAT-T--T---CAAATT--T-CGACACTTACT-CG-----------------CTA-AAAAG-GTT-CGATGT-AATTAA-AAACGA-T-----TACTATCAAA---ACAG--TACTGATC---A---TT-TTGAT------AT---------A-------------C---------TAG-TT------------------------A-A----------------CAC--AGCAAA--GTTGAGGA-AG-ATCA-GCGC-G-TTTAAAG-TGC--CGCTGAG-GCA----AAATA--CAT-CCGTG-CAAAAT-T-TGTTGTG-A-TTTTTA-CG--A-CAT--CCGTGAAT-T--TTTATGC-ACC----A-AATA---------------T---C--T-TCA-GCCAA-TACTAATCCCGAGCCGCA----------TATC-----A--T-CTACTGAATTTGTTTTcaatttatttacaccgtacagtcaaatgacggatgacgctcttccatacacactgaaaatcaaattgtttatagttgttttgttgcaggtcaaggaaatatttgtctgatgcgcctaatgaacatcgagtagggcatgggcatcagccttgtttctacaggtacctgctgattttgttgacagatggattacaataaaaataaaaaaaaaacatcattatgacttgggtaaaataatttaataaccaaagtgttgaccgattatcaaaaagtgatttgctttgtaatagatgataacatcggtgtgctaaattcatgaattgcgtgtgtatcgtaa
gi|7 : tttcaaaaaaatatttatttcagtgttagaatcctgtgcctctgtTATTCGCTG-TCCATTTATA--G-A-TAA-CATATTT-CGCCA-GTGC------AGTGAT---C--AT----------C-----------------ACTATT----------------GT--------------------A--T------TCCTTATGAGCAGA--GTTG-TGTTGATAAAATACAGAAG-TAC---TGAGGTGCAAATGTAAGAT-CAAAAC-------T-T--T---CATTTT--A-AAACCCTAACT-CGA-CACAGTT-A---AAATTG-AAAAA-ATT-CATTGT-AATTAA-GAATGA-T-----TACTATCAAA---ACAG--CACACATC---A---TT-TTAttagaatagaatatacaatttaccattaatcgaacggttttaagcagatgtgtatggctatg
gi|8 : aaaactgttagcagtgtcacttccttgtagagtgctatagaaaaaacatccattgaacacataaagcagtacacgtacattcaagatactgtagatgtatctaaatttcatgttggattaaattccattatttttgtgtctggggaaaaaacaatgaaactaattcctacataaattttcactttcagaaaatctttattctaatgttagaaatctctgtgtctcaat-T--T---CAAATT--T-CGACACTTACT-CGC-CACAGGT-A--CATGCTG-AAAAG-GTT-CGATGT-AATTAA-GAAT------------TATTA-------------CTGACC---G---CT-TTAAG------AT---------A-------------CTAACTCAACAAA-AT-C----------G--------GGGA-A-GAT---CG----CATCAC--AGCTAACGGCTCATGC-AG-T-CA-GCGC-G-TTTGATG-TGCCGCGCTGAG-GTA----AAATC--CGT-CCGTG-CAAAATGTGTAGTG---ATTTTTTA-TG--A-CAT--CCATGGAT-T--CCCCTGC-ACC----A-AGTA---------------T---C--T-TCA-GTCGA-TACGAATCTCGAGCCGCATATATACATGTACC-----A--CTTAA-TGACTTTGTTTtatttaattcctaccaaatcagacaacaa
gi|9 : attcaacgaaaattcatcttgctatcgtacgtagtaaattagcatacttcttggtacaacgtatcaacagacaagctgcatttgccctttgagatgtaggaaagaaagatgtgatcgcttaatcaatgggttgttgatgtattttaatatttctatctttgtgctaTATTCGTAG-TCCATGTCTC--G-A-TAA-CATATTT-CACCA-ATAC------TGT------C--AT----------C-----------------ACT-------------------GT--------------------A--C------CC-------ACACTTTGTTG-TATTAA--GAATG----AT-TGC---T----------------GT-CAAAACAGG-ACGG-T--TAATCGTTTT--T-GGACACTAACA-CGA-CACAGGT-G--CAAGTTA-AAAGG-GTT-CGGTGT-AATTAA-GAATGATTATATGTACTATCAAA---ACAG--T-CTGGTC---A---TT-TTAAG------AC---------A-------------C---------AAA-GC-C----------G--------GG-A-A-GGT---CG----GATTAC--AGCTATCTGCTCATGC-AG-A-CA-GTGC-G-TTTGATG-TGC--CATGGAG-ACA----TACCC--CGT-CCCTG-CAAAAT-T-TAATGTC-ATTTTTTA-TG--A-CACTACCGTGGAT-T--CACATGC-ACCCTGTA-AGTATCCA-CA--CTTT--T---C--T-TCA-GGTGA-TATGACTCCTGAGCCGCA----------TACA-----A--CACCA-TGAATTTGTTTT
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|18 ): ATATTACGTACGAATAGTTAATTTCGTGTTGATTAAATACGTTTTTGCGTACTGGAGAAACGAGGAAACTAATACAATCGATGTTTACTTCTCATAATTTTGGTTTGTTTTATATGTTTCTGTTATCGTCGTCATTTATACATAACATAAATCCACCAGTGATGCGTAATGGTCGAATTGAATTTCTAATGAGTGATGTTCTG
Unaligned ( gi|20 ): AAATACTAAAAAAGTATCTAATATTGTGTTATATTATATTTCGTTATCTTGGTGTCTGTGAGAAAAGTAAATTCAATATAACACGAATTTCTTACTTAAAAAAACTTTAGTTTAACAAAATTTTAACTTTAAAAAATCTGTAATGTTAGAATCATGTGTCTGTTATTCTTCGTCCATTTATATAGCACATT
Unaligned ( gi|24 ): TACTGTAGATGTATTTAATTTCATGTTGGATTAAATATCATTATTTTCATGTTTGGGAGAAGACAACAAAATTAACACAAATTTATGATTTCAGAAATCTGTATTTTAATATTAGAAATCTGAA
Unaligned ( gi|26 ): AGAAAACAACGAAATTAAATCCAACACGAGTTTTATTTTCAAGAAATCTTTATTTCAGTGTTAGAAATGTGTGTTTCTGTTATTCGTAGTCATGTCTCGAT