lowQualScore : 222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
lowQualScore : 33333 1 11 1 111 222222 777777777777777777777777777777777777777 22 11111 000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 111 111 111 3333333 2222 77777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 3333333333333 11 66666666666666666666666666666666666 2222222222222 1 11 2 11111 11111111111111111111 111 111 222222 11111 111 1 1 1111111111 44444444444444 22222222222222 111111 11 111 111 55 1
lowQualScore : 3 33333 3 33 1 0 9 0 444 222222 6 777777777777777777777777777777777777777 3 99 1 99999 333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 333 000 444 0 4 2222222 8888 55555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 6 0000000000000 44 8 1 33333333333333333333333333333333333 666 4 5555555555555 3 6 22 55 5 4 3 55555 4 1 77777777777777777777 0 222 4 111 55 222222 55 66666 0 333 4 0 4 777 8 2 777 4 66 2 9999999999 777 9999 44 1 5555 1 55555555555555 66 1 66666666666666 666666 7 77 111 2 4 666 4 55 7
lowQualScore : . ..... . .. . . . . ... ...... . ....................................... . .. . ..... ............................................................................................................................................................ ... ... ... . . ....... .... .............................................................................................................. . ............. .. . . ................................... ... . ............. . . .. .. . . . ..... . . .................... . ... . ... .. ...... .. ..... . ... . . . ... . . ... . .. . .......... ... .... .. . .... . .............. .. . .............. ...... . .. ... . . ... . .. .
lowQualScore : 0 33333 3 88 2 2 0 5 000 888888 7 777777777777777777777777777777777777777 7 22 7 55555 333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 888 666 000 8 0 5555555 8888 55555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 7 9999999999999 11 9 1 66666666666666666666666666666666666 444 0 2222222222222 2 6 00 55 0 4 8 66666 4 0 33333333333333333333 9 222 4 000 55 555555 55 55555 7 222 0 3 0 000 1 7 888 0 11 8 4444444444 888 4444 66 1 3333 1 22222222222222 99 7 44444444444444 444444 1 22 777 2 5 000 0 00 0
consensus : AAACTTCGT-----TC-CAT--TACAGCTGGAATTGTNTCATAAGTACGAC---ATAAATCATT-AT-GTGAT-TCTAACCGCCTGTATAC-TT-CATATAAA------AT--AATCAATTGTTTGACGGATTAT-TGTAACAACCGTGTTA-T--TCC----------C--------GT------CAAT-TTC-CGA--TTCAT-GTNCGTGGTACATGTACGCNTACCGC--GTTCAAAACTCTAGTTTACAAACTACAGGTCCGAAGTGGCTACTTACTACAGTTGTCA-TCATCAT-TAACATTTGTC---CATTTATCTCTATCAAA-TNTTAAA---ATACACCGANA-------TTAACATATATCACTTTATTTACATA-T-TCGTCC----CCCA-------ATTG-----ATT-T--ATAATANTTCAAAT---TACA-CGTTGTA-C-ATN--CGT--GT--CGAT----N------ATAGGA-T--TA---AGTC-GTCCAAA-GGAT-TAGTGA---------C----T---GTT----CC--GT----AC---TC-TG-C-----------GGAGGGGCCCCAATNTA--A-GGGGAAANTTTT-----A-ATTAGAATAATTTG--A--CA--CTA-----TCCTCTC---GGGTACCCCT-TTCATC---AC--GTG------A--TATTTCTT--T--CAACCTGACANTCTATCAT-TCCCTCT-CAA---TTCTGATTGGTCCGTTTCGTCAC---TTC-CTG--ATT----------TCTGA---TTG----GTTC-CTTCCCT-TAGGGCCGCCCCT---------TN-GCTTA--CCTCTCGAC-------CA-----AA------CGAGCAAAATCTTA---ACCGTGCA-TAAAATNGAA-CGCACTATACTAC
Reference ( gi|1 ) : AAATTTTAT-----TC-CAT--TACAGTTGGAATTTTCTCATAAGTACGAC---ATAAATCATTTAT-ATGAT-TCTAACTGCCTGTATAC-TT-CGTGTAAA------AT--AATTAGTTGTTTGACGGATTATTTGTAACAACCATGTTT-T--TCC----------C--------GT------CAAT-TTC-CGA--TTCAT-GTTCGTGATACATGTACACTTACTGTAGGTTAAATAC-CTAGGTTACA--CTACAG-TCACAAATAGTT---TACT----TTGTCAATCATTATCTGATATTTTTTTTTCATTTATCTCTATCAAA-TGTTAAA---ATACACCAAAA-------TTAACA-ATGTCACTTT----------T-TTGT-T----CCTA-------ATTG-----ATT-TA-ACAATAGCTCAAATCAATACA-C-TTGTA-C-ATG--CGT--GT--CGAT----G------ATAGGA-T--TA---AGTCGGTCCAAA-GGAT-TAGTGA---------C----T---GTT----CC--AT----AC---TC-TG-C-----------GGAGGGGCCCCAATTTA--A-GGGTAAAATTTT-----A-ATTAGAATAATTTG--A--CA--CTA-----TACTCTC---GGGTACCCCT-TTTATC---AC--GTG------A--TATTTCTT--C--CAACCTGACACTTTATCAT-TCTCTCT-CAA---TACTGATTGGTCCGTTTCGTCAC---TTC-CTG--ATT----------TCTGA---TTG----GTTC-CTTCCCT-TAGGGCCGCCCCT---------TT-TCTTG--CCTCTTGAC-------CA-----AA------TGAGCAAAATATTA---ATCGTGTA-TCAAATTGACTCGCTCTATACTAC
gi|3 : AAATTTTGTCAATCTCGCATGTTTCACTTAGAATTTTTGTATAAATCAAACTTTCTACATTATTTAT-CTGA-----AA-----TATACACATTACATATAAGCCTTATAC--AATCCATTGCTTGACGGATTAT--GTAACAACCATGTTA-T--TCC----------TCTCAATTGGT------CAAT-TTC-CGA--TTCAT-GT
gi|9 : ggaaacaatactttatctattagtcatagatatttttaatggcaatcacatagagtattgagagttatctcctctttgtcaaattttcaaatacaccagtatgtgtaatgtaccacttacgattaacatcgtgtatatttatggaaataacactatagattattcatatataaatttttaatagcaatcgcacagagttagaatcacaaatgatttatctcgtccttatgatacaattccagttgtaatgaaattatgttgaattttatttaaggacttaacaaataatgcagacaaattatacataatgAACTTGAT-----TC-CAT--TGCAGCTGGAATTGTATCATGAGTACGAC---ATAAATCATT--T-GCGATCTCTAACTATATGT
gi|3 : tctctttatcaaattttaaaatacaccagtctgtgtaatgtaccacttacgattaaaatcgtgtatatttaacttcatcgattattgatatatacatttttaatagcaatcAT-----TT-CAT--TACAACTGGAATTGTATCATAAGGACGAG---ATAAATCATT--T-GTGAT-TCTAACT--CTGTGCGA-TT-GCTATTAA------A---AAT---TTATAT-ATGAATAATCTATA------GTGTTA-T--TTC----------C--------AT------AAATATACACGATGTTAATCGTAAGTGGTACAT-TACACATACTGaaattttaatcaaggacttaacacataatacacacaa
gi|4 : ggaaacaatactttatctattagtcatagatatttttaatggcaatcacatagagtattgagagttatctcctctttgtcaaattttcaaatacacT--TACAGTTGGAATTGTTTTATAAGTACGAC---ATAAATCA---ATCGTGAT-TCTAACCGCCT-TATAC-AG-C-TAGAGA------ATACAATCAATTGTTTGACGGATTA--TGCAGCAGCGATATTA-T--TCCTCTCAATTCAC--------ATCCAG--CAAT-TTC-CAA--TTCAT-GTCCtatgttgaattttatttaaggacttaacaaataatgcagacaaattatacataatgaaattttgtcaatctcgcatgtttcacttagaatttttgtataaatcaaactttctacattatttatctgaaatatacacattacatataagccttatacaatccattgcttgacggattatgtaacaaccatgttattcctctcaattggtcaatttccgattcatgt
gi|17 : aaatcattcaaaagattacaaacatgaagtgACGAC---ATAAATCATTTAT-A--AT-TTTAACCGCCT-TGTAC-AT-CAGCTAGAGAAT--AT--AATCAATTGTTTGACGAATTA--TGTAACAATCGTGTTA-T--TCCTCTCAATT--C--------GCATCTGGCAAT-TTC-CCA--TTCAT-GTaaaggagtattgaattttgagacagtgtgtttcgtactctgcggaggggtccaatgtaaggggacatttttaattagtatgattatacactttccaatcgggtaccccttttatcacgtgatatttctttcaacctgacatatgttattccccctcaattctgattggtccgtttcatcacttcctgatttctgattggttccttcccttagggccgcctcattggcat
gi|2 : ATCATT-AT-GTTAT-TCTAACCGT---TATAC-TA----GAAAG------AT--A-TCAATTATTTG-CG-ATT--TTACTACTACCATGTGTATAATCT----------C---------T------CAAT-TTC--GA--T-AAT-GTTC------TATGTATGTT--CCGC--GTTCAAAACTCTAGTTTACAAACTACAGGTCCGAAGTGGCTACTTACTACAGTTGTCA-TCATCAT-TAACATTTGTC---CATCTATCTCTATCAAAATGTTAAAGGAATAC-CCAGAA-------TTAATC-ACAGCACTTT----------GATTGT-TA---CCTATTTAAATACTGTCCTAATTGTATACA-TAGTTCAA-T---TACAGC-CTATAACGATC--CGT--AT--TTAT----A------ATAGGA-T--TAT--AGT--GTCCAA--GGAT--AGTGA---------C----T---CTTGAGACC--TG----AT---GC-TG-C-----------TAAGGG----CTATT----A-GAGGAAAATTTT-----ATATTAGAATAATTTG--ATGCA--CTC-----TCCTTTCCGTGACTACCC---TTTATTCAAAG--GTGCT----A--TATTCTTT--C--CAATAT-ATCCTCTATCAT-TCCTTCT-CAA---T-CTGATTG--CCGTTTTGTCAT---TACTCTA----T----------TCTGA---TTGACCAGTTC-CTTCCGT---AGGCC-CCCCT---------TG-TAATACCCCCCTT----------CA-----AA------TGTGC-AAAT-TTT---ACCGTGCA-
gi|20 : gtacac------AC--AATCCATTGCTTGACGGATTAT--GTAACAACCATGTTA-T--TCC----------TCTCAATTGGT------CAAT-TTC-CGA--TTCAT-GTaaccttacccatgactaaaaattcacacactatactac
gi|12 : tTTAT---TATCAAA-TATTAAA---ATACAAAGATA-------TTAACATAT-TCACTTTATTTACATA-T-TCGTCC----CCCA-------ATTG-----ATT----ATAATATTTC-AAT---TACA-TGTTGTG-G-ATG--TGT--CG--CGGT----T------ATAGCC-TCGTAGCTGGTCTGTCCAAGTGTATCTAGAGA---------T----TTTAGTT----TT--TC----GC---TC-TGCC-----------AGCAGCGCCCCGATCTA--c
gi|11 : TTAT---TATCAAA-TATTAAA---ATACAAAGATA-------TTAACATAT-TCACTTTATTTACATA-T-TCGTCC----CCCA-------ATTG-----ATT----ATAATATTTC-AAT---TACA-TGTTGTG-G-ATG--TGT--CG--CGGT----T------ATAGCC-TCGTAGCTGGTCTGTCCAAGTGTATCTAGAGA---------T----TTTAGTT----TT--TC----GC---TC-TGCC-----------AGCAGCGCCCCGATCTA--
gi|15 : TATCTCTATCAAA-ATTTAAT---ATACACCAAAAGAATGAGTTATCA-ATATCACTTTATTATACATAT-TTAT-TCGCCCCTA-------ATTG-----ATT-T---TGATAG---A---------G-C-TT-TA-C-ATGTTCGT--GT----ATTTAAA------ATAGGA-T--TA---AGTT-GTCCAAA-GGAT-TAGTGA---------C---------TT----CCTGAT----AC---
gi|9 : TCTTTATCAAA-TTTTAAA---ATACACCAgta
gi|6 : tcTATA-C-ATC--CGT--GTATCGAT----ACATGTAATAGGAAT--TA---AGTTG-TCGAAA-GGAG-GAGGGA---------C----T-----T----CC--ATGATTACGAATT-TG-TTCAAACGTTTTGGAGGGACCC-AGTATAGAA-GGG-AAACTTTT-----A-AATAAAA-AATTT----------TTA-----TACTTTCA--GGGTACCCCT-TTCATTA--AC--GTGGTACATG--TATGTTTTAAC--CCACCTGACAATCTATCATGTCCCTCTAAAA---TCTTAATTGGT-CGTTTTGTCGG---TTC-CTGAAATT----------TCTGA---AT-----GTTCAATTCCCT-TCCATCTGCCCC-----------T-GGCTG--CCTCTgtctgtgtaatgtaccacttacgattaaaatcgtgtatatttaacttcatcgattattgatatatacatttttaatagcaatcacatatagttagagatcgcaaatgatttatgtcgtactcatgatacaattccagctgcaatggaatcaagttaaattttaatcaaggacttaacacataatacacacaa
gi|10 : A-C-ATC--CGTTTGT--TGAT----T------ACAGGA-T--TA---AGTC---CTAA-------TA-CGG---------CG---C---GTT----CC--AT----AC---TC-TG-A-----------GGAGGGGCCC-AATGTA--ATGGG--AAATTTT-----A-ATTAGAATAATTTA--A--TA--CTA-----TCCTCTC---GAGTACCCCT-TTCATC---AC--GTGAA----A--AATGTCT------AAACCTGACAATCTATCGT-TCCCTGA-C-A---TTCGGATTGGTC
gi|4 : tcGTCCAAA-GGAG-TATTGAATTTTGAGACAGTGT---GTT----TC--GT----AC---TC-TG-C-----------GGAGGGGTCC-AATGTA--A-GGGGACATTTTT-----A-ATTAGTATGATTAT--A--CA--CTT-----TCCAATC---GGGTACCCCT-TTTATC---AC--GTG------A--TATTTCTT--T--CAACCTGACA-TATGTTAT-TCCCCCT-CAA---TTCTGATTGGTCCGTTTCATCAC---TTC-CTG--ATT----------TCTGA---TTG----GTTC-CTTCCCT-TAGGGCCGCCTCA---------TT-t
gi|16 : aaatcattcaaaagattacaaacatgaagtgttacagttggaattgttttataagtacgacataaatcaatcgtgattctaaccgccttatacagctagagaatacaatcaattgtttgacggattatgcagcagcgatattattcctctcaattcacatccagcaatttccaattcatAA-GGAT-TAGTTA---------C----C----------CCTGAT----AA---TC-TG-T-----------GGAGGGACCC-AATTAA--A-GGG--AAATTTTG----A-ATTAGAATGATTTG--A--CA--CTA-----TCCTCTT---GGGTACCCCT-TTCACC---AC--GTG------A--TATTTCTT--T--CAACCTGACAC--TATCAT-TCCCTCA-CAA---ggcat
gi|7 : A-GGAT-TAGTGA---------C----TT--G----------GT----AC---TC-TG-G-----------AGAGGGGCCC-AATGTA--A-GGGGAAATTTTT-----A-ATTAGAATAATTTG--A--TA--CTC-----TCCTCTC---GAGTACCTCT-TTTATC---AC--GTG------A--TATTTCTT-----TAACCTA--------------CCCTCT-CAA---TTCTGATTGGTCCATTTTATCCC---TTC-CTG--ATT----------TCTGA---TTG----GTTC-CTTTCCT-TAGGGCCGCCCCT---------TTAGCTTA--CCTCTCGAC-------CC-----AA------TGAGCAAAA-GTTA---Aa
gi|14 : TT----CC--AT----AC---CC-TG-C-----------GGAGGG-CCCCAATGTA--A-GGGGACATTTTT-----A-ATTAGAATA-TTTG--A--TC--CTC-----TCCTGTT---GGGTCCCCCC-TTTATC---AC--GTG------A--TATT-CTT--T--CAAAATGACACTCTATCAT-TCCCTCT-CAA---TTCTGATTGGTCCGTTTTATCCA---TTC-CTcgagc
gi|5 : agcgacttcctgtatcgatatC--AT----AC---TCCTG-C-----------AAGGAGGCCCTAGT--A--A-GG--AAGATTTTTTTAGA-CCTAGAAAAATTTGTGA--CGGGCTAGTCCGTGCTC------GGCGTCCCTGTTCATC---TCCTGTG------ACATATCTTTT--CTTCAACCTGACACTCTATCAA-TC-CTCC-TAAATGTGCTGATTG--TCATTTCGGTACTCTTTC-TTG--ACTGGCACTTTCATCTAATATTTA----GTGC-CTCTC-------GCCGCCCGTTGGCCATCATC-TCTGG--TATCTCAACACTGCAGCA-----AAATTTACCGAGCAAAACCTTACCCATGGTCTA-TAAAATAAA--CGCACTATACTAC
gi|8 : TTTT-----A-AAGAGGACAATTTT-----CA--ATA-----TCCTTTC---AGGTACCCCT-TCCATC---AC--ATG------A--TCCTTTTC--T--AAACCTTACTATCTATTAT-TCCATCT-AAA---TTCAGATATGTCTGTTTTTTCAC---TTC-CTG--AAT----------TCTGA---TTG----GTTC-ATTCCAT-TACGTCTTCCCCT---------TG-GCTTA--CCTCTCGAG-------CG-----AA------TGAG-GAAATCTTA---At
gi|13 : gggggcttaaggtatgaggacttTCATC---AC--ATG------A--TCCTTTTC--T--AAACCCAATGGTTTGTCAT-CTGATCT-AAA---TTCTGATTGGTCCATTCCCTCAC---ATA-CTG--AAT----------TCTGA---TTG----GTTC-ATTCTCT-TAGGGCCGCCCCC---------TTGGCTTA--CCTCTTGAC-------GA-----AA------TGAACAAAATcgactaaat
gi|18 : GATTGGTCCATTTCATCAC---TTC-CTG--ACA----------TCTTA---TTG----GTTC-CTATCCT-TAGGGTCGGAGC-----------G-GCTTG--CAACTCGAC-------CAATTTTAA------CGAGC-AAATCTTA---CCCATGGACTAAAATTGAA-CGCACTATACTAtgtgatacatagattgaacatgaagacactatactac
gi|19 : -CTG--ATT----------TGTGA---TTG----GTTC-TTCCGCTATCGGGCCTTCCCT---------TCAGCTTA--CCTCTCGAC-------CC-----AA------TGTGCAA---ATTT---ACCGTGCA-
1 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|21 ): TATTTTATTGCAATCACAATAGAGTATCTTCGGATAAATCATCTCCTCTTTATCAAATTATTCACAAACAC
Alignments
lowQualScore : 111111111111111111111111111
lowQualScore : 11 22 1 33333333333333333333333333 2222 000000000000000000000000000 22 1 11 1 222 2222 2 2 333 111 22222222222 1111 1111111111 222222222 11 11 2 111 1111 1111111 2222222 11 222 1111 11 4444444444444444444444444444444444 22222222222222 1 1111111111 111 11111 1111111111 1111111 22222222222222 1111111 55555555555555555555 222222
lowQualScore : 66 1 22 6 6 3 5 44444444444444444444444444 77 1 1 1111 0 1 5 77 555555555555555555555555555 5 5 77 5 1 7777 6 0 88 0 77 2 4 5 3 88 5 55 111 3333 0 0 2 555 4 1 5 1 000 1 1 99999999999 3333 7 4444444444 555555555 6 66 11 8 8 0 1 5 444 99 3 0000 3 4444444 9999999 5 55 555 3333 8 11 0 7777777777777777777777777777777777 666 3 22222222222222 1 7 3 4 8888 4 1111111111 44 4 4 111 4 99 3 55 7777 3 44444 7777 9 3 4 4 4 1 777 3 55 1 7777777777 777 8888 4 4 0 4 88 55 55 4444444 00000000000000 6666666 5 55 2 00000000000000000000 5 66 8 333333
lowQualScore : .. . .. . . . . .......................... .. . . .... . . . .. ........................... . . .. . . .... . . .. . .. . . . . .. . .. ... .... . . . ... . . . . ... . . ........... .... . .......... ......... . .. .. . . . . . ... .. . .... . ....... ....... . .. ... .... . .. . .................................. ... . .............. . . . . .... . .......... .. . . ... . .. . .. .... . ..... .... . . . . . . ... . .. . .......... ... .... . . . . .. .. .. ....... .............. ....... . .. . .................... . .. . ......
lowQualScore : 55 0 22 7 7 2 0 99999999999999999999999999 99 3 7 4444 1 4 7 99 111111111111111111111111111 7 7 99 7 0 7777 7 7 33 7 55 5 0 5 0 55 0 00 000 5555 0 0 5 000 3 7 7 0 000 4 0 66666666666 3333 1 5555555555 000000000 4 22 00 0 0 8 0 2 000 66 7 9999 0 7777777 6666666 7 77 777 0000 0 11 1 0000000000000000000000000000000000 444 6 44444444444444 4 5 3 9 5555 0 0000000000 88 0 0 000 0 55 6 00 7777 6 22222 7777 4 6 0 0 0 4 000 6 55 6 5555555555 000 5555 0 0 6 0 88 00 55 4444444 88888888888888 4444444 1 44 2 55555555555555555555 6 00 0 000000
consensus : AAACTTNATTCCATTACAGCTGGAATTGTNTCATAAGTACGACATAAATCATT-AT-GTGAT-TCTAACCGCCTGTATAC---TT-CA--TATAAA------AT--A--ATCAATTGTTTGACGGATTAT-T-GTAACAACCGTGT-TAT--TCC----------C--------GT------CAAT-TTC-CGA--TTCAT-GTTCGTGGTACATGTACGCTTACCGCAGGTTNAANACTCTAGNTTACAAACTACAGGTCNNAAGTGGCTACTTACTACAGTTGTCAATCATCATCTGACATTTNTCTTTCATTTATCTCTATC-AAATNTTAA---AATACACCGGNA-------T---TAACATATATCACTT--T-AT--T-TACATATTCG-----T---CCCCCAATTGATTT--A-TA-ATAGTTC-AAT---TACATGTTGT-AC-ATNCGT--GT--CGATT------ATAGGA-T--TA---AGTC-G-TCCAAA-GGAT-TAGTGA---------C----T---GTT----CCG-T----AC---TC-TG-C-----------GGAGGGGCCCCAATGTA-AGGGGAAATTTTT----A-ATTAGAATAATTTG--A--CA--CTA-TCC-T-CTC---GG-GTACCCCT--TTCATC-AC--GTG----ATAT-TTCTTT----CA----ACCTGACANTCTATCAT-TCCCTCTCAAT-T-C-TGATTGGTCCGTTTCGTCAC---TTC-CTG--ATT----------TCTGA---TTG----GTTC-CTTCCCT-TAGGGCCG-CCCC-TTG-GC--TTACC-------TCTCGAC-------CA-----AA------TGAGCAAAATCTTAACCGTG---CA---------------TAAAATTGAA-C------GCACTATACTAC
Reference ( family-779 ) : AAACTTCGTTCCATTACAGCTGGAATTGTNTCATAAGTACGACATAAATCATT-AT-GTGAT-TCTAACCGCCTGTATAC---TT-CA--TATAAA------AT--A--ATCAATTGTTTGACGGATTAT-T-GTAACAACCGTGT-TAT--TCC----------C--------GT------CAAT-TTC-CGA--TTCAT-GTNCGTGGTACATGTACGCNTACCGC--GTTCAAAACTCTAGTTTACAAACTACAGGTCCGAAGTGGCTACTTACTACAGTTGTCA-TCATCAT-TAACATTTGTC---CATTTATCTCTATC-AAATNTTAA---AATACACCGANA-------T---TAACATATATCACTT--T-AT--T-TACATATTCG-----T---CCCCCAATTGATTT--A-TA-ATANTTCAAAT---TACACGTTGT-AC-ATNCGT--GT--CGATN------ATAGGA-T--TA---AGTC-G-TCCAAA-GGAT-TAGTGA---------C----T---GTT----CCG-T----AC---TC-TG-C-----------GGAGGGGCCCCAATNTA-AGGGGAAANTTTT----A-ATTAGAATAATTTG--A--CA--CTA-TCC-T-CTC---GG-GTACCCCT--TTCATC-AC--GTG----ATAT-TTCTTT----CA----ACCTGACANTCTATCAT-TCCCTCTCAAT-T-C-TGATTGGTCCGTTTCGTCAC---TTC-CTG--ATT----------TCTGA---TTG----GTTC-CTTCCCT-TAGGGCCG-CCCC-TTN-GC--TTACC-------TCTCGAC-------CA-----AA------CGAGCAAAATCTTAACCGTG---CA---------------TAAAATNGAA-C------GCACTATACTAC
gi|1 : AAATTTTATTCCATTACAGTTGGAATTTTCTCATAAGTACGACATAAATCATTTAT-ATGAT-TCTAACTGCCTGTATAC---TT-CG--TGTAAA------AT--A--ATTAGTTGTTTGACGGATTAT-TTGTAACAACCATGT-TTT--TCC----------C--------GT------CAAT-TTC-CGA--TTCAT-GTTCGTGATACATGTACACTTACTGTAGGTTAAATAC-CTAGGTTACA--CTACAG-TCACAAATAGTT---TACT----TTGTCAATCATTATCTGATATTTTTTTTTCATTTATCTCTATC-AAATGTTAA---AATACACCAAAA-------T---TAACA-ATGTCACTT--T-------------TTTG-----T---TCCT-AATTGATTT--AACA-ATAGCTCAAATCAATACAC-TTGT-AC-ATGCGT--GT--CGATG------ATAGGA-T--TA---AGTC-GGTCCAAA-GGAT-TAGTGA---------C----T---GTT----CCA-T----AC---TC-TG-C-----------GGAGGGGCCCCAATTTA-AGGGTAAAATTTT----A-ATTAGAATAATTTG--A--CA--CTA-TAC-T-CTC---GG-GTACCCCT--TTTATC-AC--GTG----ATAT-TTCTTC----CA----ACCTGACACTTTATCAT-TCTCTCTCAAT-A-C-TGATTGGTCCGTTTCGTCAC---TTC-CTG--ATT----------TCTGA---TTG----GTTC-CTTCCCT-TAGGGCCG-CCCC-TTT-TC--TTGCC-------TCTTGAC-------CA-----AA------TGAGCAAAATATTAATCGTG---TA---------------TCAAATTGACTC------GCTCTATACTAC
gi|10 : -AC-ATCCGTTTGT--TGATT------ACAGGA-T--TA---AGTC----CTAA-------TA-CGG---------CG---C---GTT----CCA-T----AC---TC-TG-A-----------GGAGGGGCCC-AATGTA-ATGGGAAA-TTTT----A-ATTAGAATAATTTA--A--TA--CTA-TCC-T-CTC---GA-GTACCCCT--TTCATC-AC--GTG----AAAA-ATGTCT----AA----ACCTGACAATCTATCGT-TCCCTGAC-AT-T-C-GGATTGGTC
gi|11 : tcTTAT---TATC-AAATATTAA---AATACAAAGATA-------T---TAACATAT-TCACTT--T-AT--T-TACATATTCG-----T---CCCCCAATTGA-TT--A-TA-ATATTTC-AAT---TACATGTTGT-GG-ATGTGT--CG--CGGTT------ATAGCC-TCGTAGCTGGTCTG-TCCAAGTGTATCTAGAGA---------T----TTTAGTT----TTT-C----GC---TC-TGCC-----------AGCAGCGCCCCGATCTA-t
gi|12 : TTAT---TATC-AAATATTAA---AATACAAAGATA-------T---TAACATAT-TCACTT--T-AT--T-TACATATTCG-----T---CCCCCAATTGA-TT--A-TA-ATATTTC-AAT---TACATGTTGT-GG-ATGTGT--CG--CGGTT------ATAGCC-TCGTAGCTGGTCTG-TCCAAGTGTATCTAGAGA---------T----TTTAGTT----TTT-C----GC---TC-TGCC-----------AGCAGCGCCCCGATCTA-
gi|13 : TCATC-AC--ATG----ATCC-TTTTCT----AA----ACCCAATGGTTTGTCAT-CTGATCTAAAT-T-C-TGATTGGTCCATTCCCTCAC---ATA-CTG--AAT----------TCTGA---TTG----GTTC-ATTCTCT-TAGGGCCGCCCCC-TTG-GC--TTACC-------TCTTGAC-------GA-----AA------TGAACAAAATTGTGA---TA---CA---------------T-AGATTGAA-CATGAAGACACTATACTAC
gi|14 : TT----CCA-T----AC---CC-TG-C-----------GGAGGG-CCCCAATGTA-AGGGGACATTTTT----A-ATTAGAATA-TTTG--A--TC--CTC-TCC-T-GTT---GG-GTCCCCCC--TTTATC-AC--GTG----ATAT-T-CTTT----CA----AAATGACACTCTATCAT-TCCCTCTCAAT-T-C-TGATTGGTCCGTTTTATCCA---TTC-CT
gi|15 : agcgacttcctgtatcgatatTATCTCTATC-AAAATTTAA---TATACACCAAAAGAATGAGT---TATCA-ATATCACTT--T-AT--TATACATATTTA-----TTCGCCCCTAATTGATTTTGA-TA-G-AGCT----T---TACATGTT---------CGT--GT----ATTTAAA--ATAGGA-T--TA---AGTT-G-TCCAAA-GGAT-TAGTGA---------C----T---
gi|16 : AA-GGAT-TAGTTA---------C----C-----C----CTGAT----AA---TC-TG-T-----------GGAGGGACCC-AAT-TA-AAGGGAAATTTTG----A-ATTAGAATGATTTG--A--CA--CTA-TCC-T-CTT---GG-GTACCCCT--TTCACC-AC--GTG----ATAT-TTCTTT----CA----ACCTGACA--CTATCAT-TCCCTCACAAtcctgatacgta
gi|17 : ACGACATAAATCATT--T-ATAAT-TTTAACCGCCT-TGTAC---AT-CAGCTAGAGA------AT--ATAATCAATTGTTTGACGAATTA--T-GTAACAATCGTGT-TAT--TCCTCTCAATT--C--------GCATCTGGCAAT-TTC-CCA--TTCAT-GTa
gi|18 : GATTGGTCCATTTCATCAC---TTC-CTG--ACA----------TCTTA---TTG----GTTC-CTATCCT-TAGGGTCG-GAGC---G-GC--TTGCA-------ACTCGAC-------CAATTTTAA------CGAGC-AAATCTTACCCATG---GAC--------------TAAAATTGAA-C------GCACTATACTA
gi|19 : -CTG--ATT----------TGTGA---TTG----GTTC-TTCCGCTATCGGGCCT-TCCC-TTCAGC--TTACC-------TCTCGAC-------CC-----AA------TGTGCAAA---TTTACCGTG---CA---------------
gi|2 : ATCATT-AT-GTTAT-TCTAACCGT---TATAC---T---A--GA-AAG------AT--A---TCAATTATTTG-CG-ATT-T-T-ACTACTACCATGTGTATAATCT----------C---------T------CAAT-TTC--GA--T-AAT-GTTC------TATGTATGTT--CCGC--GTTCAAAACTCTAGTTTACAAACTACAGGTCCGAAGTGGCTACTTACTACAGTTGTCA-TCATCAT-TAACATTTGTC---CATCTATCTCTATCAAAATGTTAAAGGAATAC-CCAGAA-------T---TAAT-CACAGCACTT--TGATTGT-TACCTATTTAAATACT---GTCCTAATTG---T--A-TACATAGTTC-AAT---TACAGCCTATAACGATCCGT--AT--TTATA------ATAGGA-T--TAT--AGT--G-TCC-AA-GGA--TAGTGA---------C----T---CTTGAGACCT-G----AT---GC-TG-C------------TAAGGGC-----TATT-AGAGGAAAATTTT----ATATTAGAATAATTTG--ATGCA--CTC-TCC-T-TTCCGTGA-CTACCCTTTATTCA-A-AG--GTG----CTATATTCTTTC---CA----ATAT-ATCCTCTATCAT-TCCTTCTCAA--T-C-TGATTG--CCGTTTTGTCAT---TACTCTA----T----------TCTGA---TTGACCAGTTC-CTTCCGT---AGGCC--CCCC-TTG-TA--ATACC-------CCCCT-T-------CA-----AA------TGTGC-AAATTTT-ACCGTG---CAAACCTTACCCATGACTAAAAATTCA-C------ACACTATACTACaac
gi|20 : gtacac------AC--A--ATCCATTGCTTGACGGATTAT---GTAACAACCATGT-TAT--TCC----------TCTCAATTGGT------CAAT-TTC-CGA--TTCAT-GT
gi|3 : tTCTTTGTC-AAATTTTCA---AATACACCAGTA-------TGTGTA--ATGTACCACTTACG-AT--T-AACATc
gi|3 : ggaaacaatactttatctattagtcatagatatttttaatggcaatcacatagagtattgagagttatctccTTTCATTACAACTGGAATTGTATCATAAGGACGAGATAAATCATT--T-GTGAT-TCTAAC--TCTGTGCGA---TT-GC--TATTAA------A---A--AT---TTATAT-ATGAATAATCT-ATA------GTGT-TAT--TTC----------C--------AT------AAATATACACGATGTTAATCGTAAGTGGTACAT-TACACATACTGcgtgtatatttatggaaataacactatagattattcatatataaatttttaatagcaatcgcacagagttagaatcacaaatgatttatctcgtccttatgatacaattccagttgtaatgaaattatgttgaattttatttaaggacttaacaaataatgcagacaaattatacataatgaaattttgtcaatctcgcatgtttcacttagaatttttgtataaatcaaactttctacattatttatctgaaatatacacattacatataagccttatacaatccattgcttgacggattatgtaacaaccatgttattcctctcaattggtcaatttccgattcatgt
gi|3 : ggaaacaatactttatctattagtcatagatatttttaatggcaatcacatagagtattgagagttatctcctctttgtcaaattttcaaatacacTATACACATTACA--TATAAGCCTTATAC--A--ATCCATTGCTTGACGGATTAT---GTAACAACCATGT-TAT--TCC----------TCTCAATTGGT------CAAT-TTC-CGA--TTCAT-GTttatgttgaattttatttaaggacttaacaaataatgcagacaaattatacataatgaaattttgtcaatctcgcatgtttcacttagaatttttgtataaatcaaactttctacattatttatctgaaatatacacattacatataagccttatacaatccattgcttgacggattatgtaacaaccatgttattcctctcaattggtcaatttccgattcatgt
gi|4 : ggaaacaatactttatctattagtcatagatatttttaatggcaatcacatagagtattgagagttatctcctctttgtcaaattttcaaatacaccagtatgtgtaatgtaccacttacgattaacatcgtgtatatttatggaaataacactatagattattcatatataaatttttaatagcaatcgcacagagttagaatcacaaatgatttatctcgtccttatgatacaattccagttgtaatgaaattatgttgaattttatttaaggacttaacaaataatgcagacaaattatacataatgaaattttgtcaatctcgcatgtttcacttagaatttttgtataaatcaaactttctacattatttatctgaaaTTACAGTTGGAATTGTTTTATAAGTACGACATAAATCA---ATCGTGAT-TCTAACCGCCT-TATAC---AG-C---TAGAGA------ATACA--ATCAATTGTTTGACGGATTA--T-GCAGCAGCGATAT-TAT--TCCTCTCAATTCAC--------ATCCAG--CAAT-TTC-CAA--TTCAT-GTCC
gi|4 : aaatcattcaaaagattacaaacatgaagtg-G-TCCAAA-GGAG-TATTGAATTTTGAGACAGTGT---GTT----TCG-T----AC---TC-TG-C-----------GGAGGGGTCC-AATGTA-AGGGGACATTTTT----A-ATTAGTATGATTAT--A--CA--CTT-TCC-A-ATC---GG-GTACCCCT--TTTATC-AC--GTG----ATAT-TTCTTT----CA----ACCTGACA-TATGTTAT-TCCCCCTCAAT-T-C-TGATTGGTCCGTTTCATCAC---TTC-CTG--ATT----------TCTGA---TTG----GTTC-CTTCCCT-TAGGGCCG-CCTCATTG-GC--aaaggagtattgaattttgagacagtgtgtttcgtactctgcggaggggtccaatgtaaggggacatttttaattagtatgattatacactttccaatcgggtaccccttttatcacgtgatatttctttcaacctgacatatgttattccccctcaattctgattggtccgtttcatcacttcctgatttctgattggttccttcccttagggccgcctcattggcat
gi|5 : aaatcattcaaaagattacaaacatgaagtgttacagttggaattgttttataagtacgacataaatcaatcgtgattctaaccgccttatacagctagagaatacaatcaattgtttgacggattatgcagcagcgatattattcctctcaattcacatccagcaatttccaattcatCA-T----AC---TCCTG-C-----------AAGGAGGCCCTAGT----AAGGAAGATTTTTTTAGA-CCTAGAAAAATTTGTGA--CGGGCTAGTCCGTGCTC---GGCGT--CCCTG-TTCATC-TCCTGTG----ACAT-ATCTTTTCTTCA----ACCTGACACTCTATCAA-TCCTCCTAAATGTGC-TGATTG--TCATTTCGGTACTCTTTC-TTG--ACTGGCACTTTCATCTAATATTTA----GTGC-CTCTC-------GCCG-CCCG-TTG-GCCATCATCTCTGGTATCTCAACACTGCAGCA-----AAATTTACCGAGCAAAACCTTACCCATGGTCTA---------------TAAAATA-AA-C------GCACTATACTACat
gi|6 : TAT-AC-ATCCGT--GTATCGATACATGTAATAGGAAT--TA---AGTT-G-TCGAAA-GGAG-GAGGGA---------C----T-----T----CCA-TGATTACGAATT-TG-TTCAAACGTTTTGGAGGGA-CCCAGTATAGAAGGGAAACTTTT----A-AATAAAA-AATTT----------TTA-TAC-T-TTCA--GG-GTACCCCT--TTCATTAAC--GTGGTACATGT-ATGTTT----TAACCCACCTGACAATCTATCATGTCCCTCTAAAA-T-CTTAATTGGT-CGTTTTGTCGG---TTC-CTGAAATT----------TCTGA---AT-----GTTCAATTCCCT-TCCATCTG-CCCC--TG-GC---TGCC-------TCTt
gi|7 : A-GGAT-TAGTGA---------C----TT--G--------G-T----AC---TC-TG-G-----------AGAGGGGCCC-AATGTA-AGGGGAAATTTTT----A-ATTAGAATAATTTG--A--TA--CTC-TCC-T-CTC---GA-GTACCTCT--TTTATC-AC--GTG----ATAT-TTCTTT-----A----ACCTA--------------CCCTCTCAAT-T-C-TGATTGGTCCATTTTATCCC---TTC-CTG--ATT----------TCTGA---TTG----GTTC-CTTTCCT-TAGGGCCG-CCCCTTTA-GC--TTACC-------TCTCGAC-------CC-----AA------TGAGCAAAA-GTTAAC
gi|8 : GGGGGCTTAAGGTA-TGAGGACTTTTTT----A-AAGAGGACAATTTT-----CA--ATA-TCC-T-TTC---AG-GTACCCCT--TCCATC-AC--ATG----ATCC-TTTTCT----AA----ACCTTACTATCTATTAT-TCCATCTAAAT-T-C-AGATATGTCTGTTTTTTCAC---TTC-CTG--AAT----------TCTGA---TTG----GTTC-ATTCCAT-TACGTCTT-CCCC-TTG-GC--TTACC-------TCTCGAG-------CG-----AA------TGAG-GAAATCTTAACgagc
gi|9 : TCTTTATC-AAATTTTAA---AATACACCAGTC-------TGTGTA--ATGTACCACTT--gactaaat
gi|9 : tcAACTTGATTCCATTGCAGCTGGAATTGTATCATGAGTACGACATAAATCATT--T-GCGATCTCTAACacgattaaaatcgtgtatatttaacttcatcgattattgatatatacatttttaatagcaatcacatatagttagagatcgcaaatgatttatgtcgtactcatgatacaattccagctgcaatggaatcaagttaaattttaatcaaggacttaacacataatacacacaa
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|21 ): TATTTTATTGCAATCACAATAGAGTATCTTCGGATAAATCATCTCCTCTTTATCAAATTATTCACAAACAC
Alignments
lowQualScore : 111111111111111111111111111
lowQualScore : 22 1 33333333333333333333333333 2222 000000000000000000000000000 11 1 11 1 222 2222 1 1 222 111 222222222222222 1111 1111111111 222222222 11 11 111 1111 1111111 2222222222 11 222 1111 11 4444444444444444444444444444444444 22222222222222 1 1111111111 111 11111 1111111111 1111111 22222222222222 111111 55555555555555555555 222222
lowQualScore : 1 1 22 6 6 3 5 44444444444444444444444444 77 1 1 1111 0 1 5 77 555555555555555555555555555 5 5 77 5 1 7777 6 0 7 0 88 1 1 5 1 88 5 22 111 3333 5 5 1 111 4 1 5 1 000 555555555555555 3333 7 4444444444 555555555 6 66 11 8 8 0 8 444 5 3 0000 3 4444444 4444444444 5 5 55 555 3333 8 11 0 7777777777777777777777777777777777 666 3 22222222222222 5 3 3 8888 4 1111111111 44 4 4 111 4 99 3 55 7777 3 44444 7777 9 3 4 4 4 1 777 3 55 1 7777777777 777 8888 4 4 0 4 88 4 55 4444444 00000000000000 444444 5 55 2 00000000000000000000 5 6 8 333333
lowQualScore : . . .. . . . . .......................... .. . . .... . . . .. ........................... . . .. . . .... . . . . .. . . . . .. . .. ... .... . . . ... . . . . ... ............... .... . .......... ......... . .. .. . . . . ... . . .... . ....... .......... . . .. ... .... . .. . .................................. ... . .............. . . . .... . .......... .. . . ... . .. . .. .... . ..... .... . . . . . . ... . .. . .......... ... .... . . . . .. . .. ....... .............. ...... . .. . .................... . . . ......
lowQualScore : 0 0 22 7 7 2 0 99999999999999999999999999 99 3 7 4444 1 4 7 99 111111111111111111111111111 7 7 99 7 2 7777 7 7 3 7 00 0 0 5 0 55 0 00 000 5555 5 0 0 555 3 7 7 0 000 444444444444444 3333 1 5555555555 000000000 4 22 00 0 0 8 0 000 0 7 9999 0 7777777 6666666666 7 7 77 777 0000 0 11 1 0000000000000000000000000000000000 444 6 44444444444444 6 1 3 5555 0 0000000000 88 0 0 000 0 55 6 00 7777 6 22222 7777 4 6 0 0 0 4 000 6 55 6 5555555555 000 5555 0 0 6 0 88 0 55 4444444 88888888888888 444444 1 44 2 55555555555555555555 6 0 0 000000
consensus : AAACTTNATTCCATTACAGCTGGAATTGTNTCATAAGTACGACATAAATCATT-AT-GTGAT-TCTAACCGCCTGTATAC---TT-CA--TATAAA------AT--A--ATCAATTGTTTGACGGATTAT-T-GTAACAACCGTGT-TAT--TCC----------C--------GT------CAAT-TTC-CGA--TTCAT-GTTCGTGGTACATGTACGCTTACCGCAGGTTNAANACTCTAGNTTACAAACTACAGGTCNNAAGTGGCTACTTACTACAGTTGTCAATCATCATCTGACATTTNTCTTTCATTTATCTCTATC-AAATNTTAA---AATACACCG-------GNAT---TAACATATATCACTT--T-AT--T-TACATATTCG-----T---CCCCCAATTGATTT--A-TA-ATAGTTCAA-T---TACATGTTGT-AC-ATNCGT--GT--CGAT-----T----A-TAGGA-T--TA---AGTC-G-TCCAAA-GGAT-TAGTGA---------C----T---GTT----CCG-T----AC---TC-TG-C-----------GGAGGGGCCCCAATGTA-AGGGGAAATTTTT----A-ATTAGAATAATTTG--A--CA--CTA-TCC-T-CTC---GG-GTACCCCT--TTCATCA-C--GTGATA----T-TTCTTT----CAACC----TGACANTCTATCAT-TCCCTCTCAAT-T-C-TGATTGGTCCGTTTCGTCAC---TTC-CTG--ATT----------TCTGA---TTG----GTTC-CTTCCCT-TAGGGCCG-CCCC-TT-GGC--TTACC-------TCTCGAC-------CA-----AA------TGAGCAAAATCTTAACCGTG---CA---------------TAAAATTGAA-C------GCACTATACTAC
Reference ( family-779 ) : AAACTTNATTCCATTACAGCTGGAATTGTNTCATAAGTACGACATAAATCATT-AT-GTGAT-TCTAACCGCCTGTATAC---TT-CA--TATAAA------AT--A--ATCAATTGTTTGACGGATTAT-T-GTAACAACCGTGT-TAT--TCC----------C--------GT------CAAT-TTC-CGA--TTCAT-GTTCGTGGTACATGTACGCTTACCGCAGGTTNAANACTCTAGNTTACAAACTACAGGTCNNAAGTGGCTACTTACTACAGTTGTCAATCATCATCTGACATTTNTCTTTCATTTATCTCTATC-AAATNTTAA---AATACACCG-------GNAT---TAACATATATCACTT--T-AT--T-TACATATTCG-----T---CCCCCAATTGATTT--A-TA-ATAGTTCAA-T---TACATGTTGT-AC-ATNCGT--GT--CGAT-----T----A-TAGGA-T--TA---AGTC-G-TCCAAA-GGAT-TAGTGA---------C----T---GTT----CCG-T----AC---TC-TG-C-----------GGAGGGGCCCCAATGTA-AGGGGAAATTTTT----A-ATTAGAATAATTTG--A--CA--CTA-TCC-T-CTC---GG-GTACCCCT--TTCATCA-C--GTGATA----T-TTCTTT----CAACC----TGACANTCTATCAT-TCCCTCTCAAT-T-C-TGATTGGTCCGTTTCGTCAC---TTC-CTG--ATT----------TCTGA---TTG----GTTC-CTTCCCT-TAGGGCCG-CCCC-TT-GGC--TTACC-------TCTCGAC-------CA-----AA------TGAGCAAAATCTTAACCGTG---CA---------------TAAAATTGAA-C------GCACTATACTAC
gi|1 : AAATTTTATTCCATTACAGTTGGAATTTTCTCATAAGTACGACATAAATCATTTAT-ATGAT-TCTAACTGCCTGTATAC---TT-CG--TGTAAA------AT--A--ATTAGTTGTTTGACGGATTAT-TTGTAACAACCATGT-TTT--TCC----------C--------GT------CAAT-TTC-CGA--TTCAT-GTTCGTGATACATGTACACTTACTGTAGGTTAAATAC-CTAGGTTACA--CTACAG-TCACAAATAGTT---TACT----TTGTCAATCATTATCTGATATTTTTTTTTCATTTATCTCTATC-AAATGTTAA---AATACACCA-------AAAT---TAACA-ATGTCACTT--T-------------TTTG-----T---TCCT-AATTGATTT--AACA-ATAGCTCAAATCAATACAC-TTGT-AC-ATGCGT--GT--CGAT-----G----A-TAGGA-T--TA---AGTC-GGTCCAAA-GGAT-TAGTGA---------C----T---GTT----CCA-T----AC---TC-TG-C-----------GGAGGGGCCCCAATTTA-AGGGTAAAATTTT----A-ATTAGAATAATTTG--A--CA--CTA-TAC-T-CTC---GG-GTACCCCT--TTTATCA-C--GTGATA----T-TTCTTC----CAACC----TGACACTTTATCAT-TCTCTCTCAAT-A-C-TGATTGGTCCGTTTCGTCAC---TTC-CTG--ATT----------TCTGA---TTG----GTTC-CTTCCCT-TAGGGCCG-CCCC-TT-TTC--TTGCC-------TCTTGAC-------CA-----AA------TGAGCAAAATATTAATCGTG---TA---------------TCAAATTGACTC------GCTCTATACTAC
gi|10 : -AC-ATCCGTTTGT--TGAT-----T----A-CAGGA-T--TA---AGTC----CTAA-------TA-CGG---------CG---C---GTT----CCA-T----AC---TC-TG-A-----------GGAGGGGCCC-AATGTA-ATGGGAAATTTT-----A-ATTAGAATAATTTA--A--TA--CTA-TCC-T-CTC---GA-GTACCCCT--TTCATCA-C--GTGAAA----A-ATGTCT----AAACC----TGACAATCTATCGT-TCCCTGAC-AT-T-C-GGATTGGTC
gi|11 : tcTTAT---TATC-AAATATTAA---AATACAAAG-------ATAT---TAACATAT-TCACTT--T-AT--T-TACATATTCG-----T---CCCCCAATTGA-TT--A-TA-ATATTTCAA-T---TACATGTTGT-GG-ATGTGT--CG--CGGT-----T----A-TAGCC-TCGTAGCTGGTCTG-TCCAAGTGTATCTAGAGA---------T----TTTAGTT----TTT-C----GC---TC-TGCC-----------AGCAGCGCCCCGATCTA-t
gi|12 : TTAT---TATC-AAATATTAA---AATACAAAG-------ATAT---TAACATAT-TCACTT--T-AT--T-TACATATTCG-----T---CCCCCAATTGA-TT--A-TA-ATATTTCAA-T---TACATGTTGT-GG-ATGTGT--CG--CGGT-----T----A-TAGCC-TCGTAGCTGGTCTG-TCCAAGTGTATCTAGAGA---------T----TTTAGTT----TTT-C----GC---TC-TGCC-----------AGCAGCGCCCCGATCTA-
gi|13 : TCATCA-C--ATGATC----C-TTTTCT----AAACC----CAATGGTTTGTCAT-CTGATCTAAAT-T-C-TGATTGGTCCATTCCCTCAC---ATA-CTG--AAT----------TCTGA---TTG----GTTC-ATTCTCT-TAGGGCCGCCCCC-TT-GGC--TTACC-------TCTTGAC-------GA-----AA------TGAACAAAATTGTGA---TA---CA---------------T-AGATTGAA-CATGAAGACACTATACTAC
gi|14 : TT----CCA-T----AC---CC-TG-C-----------GGAGGG-CCCCAATGTA-AGGGGACATTTTT----A-ATTAGAATA-TTTG--A--TC--CTC-TCC-T-GTT---GG-GTCCCCCC--TTTATCA-C--GTGATA----T-T-CTTT----CAAAA----TGACACTCTATCAT-TCCCTCTCAAT-T-C-TGATTGGTCCGTTTTATCCA---TTC-CT
gi|15 : agcgacttcctgtatcgatatTATCTCTATC-AAAATTTAA---TATACACCAAAAGAATGAGT---TATCA-ATATCACTT--T-AT--TATACATATTTA-----TTCGCCCCTAATTGATTTTGA-TA-G-AGCT----T---TACATGTT---------CGT--GT----AT-----TTAAAA-TAGGA-T--TA---AGTT-G-TCCAAA-GGAT-TAGTGA---------C----T---
gi|16 : AA-GGAT-TAGTTA---------C----C-----C----CTGAT----AA---TC-TG-T-----------GGAGGGACCC-AAT-TA-AAGGGAAATTTTG----A-ATTAGAATGATTTG--A--CA--CTA-TCC-T-CTT---GG-GTACCCCT--TTCACCA-C--GTGATA----T-TTCTTT----CAACC----TGACA--CTATCAT-TCCCTCACAAtcctgatacgta
gi|17 : ACGACATAAATCATT--T-ATAAT-TTTAACCGCCT-TGTAC---AT-CAGCTAGAGA------AT--ATAATCAATTGTTTGACGAATTA--T-GTAACAATCGTGT-TAT--TCCTCTCAATT--C--------GCATCTGGCAAT-TTC-CCA--TTCAT-GTa
gi|18 : GATTGGTCCATTTCATCAC---TTC-CTG--ACA----------TCTTA---TTG----GTTC-CTATCCT-TAGGGTCG-GAGC----GGC--TTGCA-------ACTCGAC-------CAATTTTAA------CGAGC-AAATCTTACCCATG---GAC--------------TAAAATTGAA-C------GCACTATACTA
gi|19 : -CTG--ATT----------TGTGA---TTG----GTTC-TTCCGCTATCGGGCCT-TCCC-TTCAGC--TTACC-------TCTCGAC-------CC-----AA------TGTGCAAA---TTTACCGTG---CA---------------
gi|2 : ATCATT-AT-GTTAT-TCTAACCGT---TATAC---T---A--GA-AAG------AT--A---TCAATTATTTG-CG-ATT-T-T-ACTACTACCATGTGTATAATCT----------C---------T------CAAT-TTC--GA--T-AAT-GTTC------TATGTATGTT--CCGC--GTTCAAAACTCTAGTTTACAAACTACAGGTCCGAAGTGGCTACTTACTACAGTTGTC-ATCATCAT-TAACATTTGTC---CATCTATCTCTATCAAAATGTTAAAGGAATAC-CCA-------GAAT---TAAT-CACAGCACTT--TGATTGT-TACCTATTTAAATACT---GTCCTAATTG---T--A-TACATAGTTCAA-T---TACAGCCTATAACGATCCGT--AT--TTAT-----A----A-TAGGA-T--TAT--AGT--G-TCC-AA-GGA--TAGTGA---------C----T---CTTGAGACCT-G----AT---GC-TG-C------------TAAGGGC-----TATT-AGAGGAAAATTTT----ATATTAGAATAATTTG--ATGCA--CTC-TCC-T-TTCCGTGA-CTACCCTTTATTCA-AA-G--GTGCTA----TATTCTTTC---CAATA----T-ATCCTCTATCAT-TCCTTCTCAA--T-C-TGATTG--CCGTTTTGTCAT---TACTCTA----T----------TCTGA---TTGACCAGTTC-CTTCCGT---AGGCC--CCCC-TT-GTA--ATACC-------CCCCT-T-------CA-----AA------TGTGC-AAATTTT-ACCGTG---CAAACCTTACCCATGACTAAAAATTCA-C------ACACTATACTACaac
gi|20 : gtacac------AC--A--ATCCATTGCTTGACGGATTAT---GTAACAACCATGT-TAT--TCC----------TCTCAATTGGT------CAAT-TTC-CGA--TTCAT-GT
gi|3 : tTCTTTGTC-AAATTTTCA---AATACACCA-------GTATGTGTA--ATGTACCACTTACG-AT--T-AACATc
gi|3 : ggaaacaatactttatctattagtcatagatatttttaatggcaatcacatagagtattgagagttatctccAACATAATTTCATTACAACTGGAATTGTATCATAAGGACGAGATAAATCATT--T-GTGAT-TCTAAC--TCTGTGCGA---TT-GC--TATTAA------A---A--AT---TTATAT-ATGAATAATCT-ATA------GTGT-TAT--TTC----------C--------AT------AAATATACACGATGTTAATCGTAAGTGGTACAT-TACACATACTGcgtgtatatttatggaaataacactatagattattcatatataaatttttaatagcaatcgcacagagttagaatcacaaatgatttatctcgtccttatgatacaattccagttgtaatgaaattatgttgaattttatttaaggacttaacaaataatgcagacaaattatacataatgaaattttgtcaatctcgcatgtttcacttagaatttttgtataaatcaaactttctacattatttatctgaaatatacacattacatataagccttatacaatccattgcttgacggattatgtaacaaccatgttattcctctcaattggtcaatttccgattcatgt
gi|3 : ggaaacaatactttatctattagtcatagatatttttaatggcaatcacatagagtattgagagttatctcctctttgtcaaattttcaaatacacTATACACATTACA--TATAAGCCTTATAC--A--ATCCATTGCTTGACGGATTAT---GTAACAACCATGT-TAT--TCC----------TCTCAATTGGT------CAAT-TTC-CGA--TTCAT-GTgaattttatttaaggacttaacaaataatgcagacaaattatacataatgaaattttgtcaatctcgcatgtttcacttagaatttttgtataaatcaaactttctacattatttatctgaaatatacacattacatataagccttatacaatccattgcttgacggattatgtaacaaccatgttattcctctcaattggtcaatttccgattcatgt
gi|4 : ggaaacaatactttatctattagtcatagatatttttaatggcaatcacatagagtattgagagttatctcctctttgtcaaattttcaaatacaccagtatgtgtaatgtaccacttacgattaacatcgtgtatatttatggaaataacactatagattattcatatataaatttttaatagcaatcgcacagagttagaatcacaaatgatttatctcgtccttatgatacaattccagttgtaatgaaattatgttgaattttatttaaggacttaacaaataatgcagacaaattatacataatgaaattttgtcaatctcgcatgtttcacttagaatttttgtataaatcaaactttctacattatttatctgaaaTTACAGTTGGAATTGTTTTATAAGTACGACATAAATCA---ATCGTGAT-TCTAACCGCCT-TATAC---AG-C---TAGAGA------ATACA--ATCAATTGTTTGACGGATTA--T-GCAGCAGCGATAT-TAT--TCCTCTCAATTCAC--------ATCCAG--CAAT-TTC-CAA--TTCAT-GTCC
gi|4 : aaatcattcaaaagattacaaacatgaagtg-G-TCCAAA-GGAG-TATTGAATTTTGAGACAGTGT---GTT----TCG-T----AC---TC-TG-C-----------GGAGGGGTCC-AATGTA-AGGGGACATTTTT----A-ATTAGTATGATTAT--A--CA--CTT-TCC-A-ATC---GG-GTACCCCT--TTTATCA-C--GTGATA----T-TTCTTT----CAACC----TGACA-TATGTTAT-TCCCCCTCAAT-T-C-TGATTGGTCCGTTTCATCAC---TTC-CTG--ATT----------TCTGA---TTG----GTTC-CTTCCCT-TAGGGCCG-CCTCATT-GGC--aaaggagtattgaattttgagacagtgtgtttcgtactctgcggaggggtccaatgtaaggggacatttttaattagtatgattatacactttccaatcgggtaccccttttatcacgtgatatttctttcaacctgacatatgttattccccctcaattctgattggtccgtttcatcacttcctgatttctgattggttccttcccttagggccgcctcattggcat
gi|5 : aaatcattcaaaagattacaaacatgaagtgttacagttggaattgttttataagtacgacataaatcaatcgtgattctaaccgccttatacagctagagaatacaatcaattgtttgacggattatgcagcagcgatattattcctctcaattcacatccagcaatttccaattcatCA-T----AC---TCCTG-C-----------AAGGAGGCCCTA--GTA-AGGA-AGATTTTTTTAGA-CCTAGAAAAATTTGTGA--CGGGCTAGTCCGTGCTC---GGCGT--CCCTG-TTCATCT-CCTGTGACA----T-ATCTTTTCTTCAACC----TGACACTCTATCAA-TCCTCCTAAATGTGC-TGATTG--TCATTTCGGTACTCTTTC-TTG--ACTGGCACTTTCATCTAATATTTA----GTGC-CTCTC-------GCCG-CCCG-TT-GGCCATCATCTCTGGTATCTCAACACTGCAGCA-----AAATTTACCGAGCAAAACCTTACCCATGGTCTA---------------TAAAA-TAAA-C------GCACTATACTACat
gi|6 : TAT-AC-ATCCGT--GTATCGATACATGT----AATAGGAAT--TA---AGTT-G-TCGAAA-GGAG-GAGGGA---------C----T-----T----CCA-TGATTACGAATT-TG-TTCAAACGTTTTGGAGGGACCC-AGTATAGAAGGGAAACTTTT----A-AATAAAA-AATTT----------TTA-TAC-T-TTCA--GG-GTACCCCT--TTCATTAAC--GTGGTACATGT-ATGTTT----TAACCCACCTGACAATCTATCATGTCCCTCTAAAA-T-CTTAATTGGT-CGTTTTGTCGG---TTC-CTGAAATT----------TCTGA---AT-----GTTCAATTCCCT-TCCATCTG-CCCC--T-GGC---TGCC-------TCTt
gi|7 : A-GGAT-TAGTGA---------C----TT--G--------G-T----AC---TC-TG-G-----------AGAGGGGCCC-AATGTA-AGGGGAAATTTTT----A-ATTAGAATAATTTG--A--TA--CTC-TCC-T-CTC---GA-GTACCTCT--TTTATCA-C--GTGATA----T-TTCTTT-----AACC----TA--------------CCCTCTCAAT-T-C-TGATTGGTCCATTTTATCCC---TTC-CTG--ATT----------TCTGA---TTG----GTTC-CTTTCCT-TAGGGCCG-CCCCTTT-AGC--TTACC-------TCTCGAC-------CC-----AA------TGAGCAAAA-GTTAAC
gi|8 : GGGGGCTTAAGGTA-TGAGGACTTTTTT----A-AAGAGGACAATTTT-----CA--ATA-TCC-T-TTC---AG-GTACCCCT--TCCATCA-C--ATGATC----C-TTTTCT----AAACC----TTACTATCTATTAT-TCCATCTAAAT-T-C-AGATATGTCTGTTTTTTCAC---TTC-CTG--AAT----------TCTGA---TTG----GTTC-ATTCCAT-TACGTCTT-CCCC-TT-GGC--TTACC-------TCTCGAG-------CG-----AA------TGAG-GAAATCTTAACgagc
gi|9 : TCTTTATC-AAATTTTAA---AATACACCA-------GTCTGTGTA--ATGTACCACTT--gactaaat
gi|9 : tcAACTTGATTCCATTGCAGCTGGAATTGTATCATGAGTACGACATAAATCATT--T-GCGATCTCTAACacgattaaaatcgtgtatatttaacttcatcgattattgatatatacatttttaatagcaatcacatatagttagagatcgcaaatgatttatgtcgtactcatgatacaattccagctgcaatggaatcaagttaaattttaatcaaggacttaacacataatacacacaa
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|21 ): TATTTTATTGCAATCACAATAGAGTATCTTCGGATAAATCATCTCCTCTTTATCAAATTATTCACAAACAC
Alignments
lowQualScore : 111111111111111111111111111
lowQualScore : 22 1 33333333333333333333333333 2222 000000000000000000000000000 11 1 11 1 222 2222 1 1 222 111 222222222222222 1111 1111111111 222222222 11 11 111 1111 1111111 2222222222 11 222 1111 11 4444444444444444444444444444444444 22222222222222 1 1111111111 111 11111 1111111111 1111111 22222222222222 111111 55555555555555555555 222222
lowQualScore : 1 1 22 6 6 3 5 44444444444444444444444444 77 1 1 1111 0 1 5 77 555555555555555555555555555 5 5 77 5 1 7777 6 0 7 0 88 1 1 5 1 88 5 22 111 3333 5 5 1 111 4 1 5 1 000 555555555555555 3333 7 4444444444 555555555 6 66 11 8 8 0 8 444 5 3 0000 3 4444444 4444444444 5 5 55 555 3333 8 11 0 7777777777777777777777777777777777 666 3 22222222222222 5 3 3 8888 4 1111111111 44 4 4 111 4 99 3 55 7777 3 44444 7777 9 3 4 4 4 1 777 3 55 1 7777777777 777 8888 4 4 0 4 88 4 55 4444444 00000000000000 444444 5 55 2 00000000000000000000 5 6 8 333333
lowQualScore : . . .. . . . . .......................... .. . . .... . . . .. ........................... . . .. . . .... . . . . .. . . . . .. . .. ... .... . . . ... . . . . ... ............... .... . .......... ......... . .. .. . . . . ... . . .... . ....... .......... . . .. ... .... . .. . .................................. ... . .............. . . . .... . .......... .. . . ... . .. . .. .... . ..... .... . . . . . . ... . .. . .......... ... .... . . . . .. . .. ....... .............. ...... . .. . .................... . . . ......
lowQualScore : 0 0 22 7 7 2 0 99999999999999999999999999 99 3 7 4444 1 4 7 99 111111111111111111111111111 7 7 99 7 2 7777 7 7 3 7 00 0 0 5 0 55 0 00 000 5555 5 0 0 555 3 7 7 0 000 444444444444444 3333 1 5555555555 000000000 4 22 00 0 0 8 0 000 0 7 9999 0 7777777 6666666666 7 7 77 777 0000 0 11 1 0000000000000000000000000000000000 444 6 44444444444444 6 1 3 5555 0 0000000000 88 0 0 000 0 55 6 00 7777 6 22222 7777 4 6 0 0 0 4 000 6 55 6 5555555555 000 5555 0 0 6 0 88 0 55 4444444 88888888888888 444444 1 44 2 55555555555555555555 6 0 0 000000
consensus : AAACTTNATTCCATTACAGCTGGAATTGTNTCATAAGTACGACATAAATCATT-AT-GTGAT-TCTAACCGCCTGTATAC---TT-CA--TATAAA------AT--A--ATCAATTGTTTGACGGATTAT-T-GTAACAACCGTGT-TAT--TCC----------C--------GT------CAAT-TTC-CGA--TTCAT-GTTCGTGGTACATGTACGCTTACCGCAGGTTNAANACTCTAGNTTACAAACTACAGGTCNNAAGTGGCTACTTACTACAGTTGTCAATCATCATCTGACATTTNTCTTTCATTTATCTCTATC-AAATNTTAA---AATACACCG-------GNAT---TAACATATATCACTT--T-AT--T-TACATATTCG-----T---CCCCCAATTGATTT--A-TA-ATAGTTCAA-T---TACATGTTGT-AC-ATNCGT--GT--CGAT-----T----A-TAGGA-T--TA---AGTC-G-TCCAAA-GGAT-TAGTGA---------C----T---GTT----CCG-T----AC---TC-TG-C-----------GGAGGGGCCCCAATGTA-AGGGGAAATTTTT----A-ATTAGAATAATTTG--A--CA--CTA-TCC-T-CTC---GG-GTACCCCT--TTCATCA-C--GTGATA----T-TTCTTT----CAACC----TGACANTCTATCAT-TCCCTCTCAAT-T-C-TGATTGGTCCGTTTCGTCAC---TTC-CTG--ATT----------TCTGA---TTG----GTTC-CTTCCCT-TAGGGCCG-CCCC-TT-GGC--TTACC-------TCTCGAC-------CA-----AA------TGAGCAAAATCTTAACCGTG---CA---------------TAAAATTGAA-C------GCACTATACTAC
Reference ( family-779 ) : AAACTTNATTCCATTACAGCTGGAATTGTNTCATAAGTACGACATAAATCATT-AT-GTGAT-TCTAACCGCCTGTATAC---TT-CA--TATAAA------AT--A--ATCAATTGTTTGACGGATTAT-T-GTAACAACCGTGT-TAT--TCC----------C--------GT------CAAT-TTC-CGA--TTCAT-GTTCGTGGTACATGTACGCTTACCGCAGGTTNAANACTCTAGNTTACAAACTACAGGTCNNAAGTGGCTACTTACTACAGTTGTCAATCATCATCTGACATTTNTCTTTCATTTATCTCTATC-AAATNTTAA---AATACACCG-------GNAT---TAACATATATCACTT--T-AT--T-TACATATTCG-----T---CCCCCAATTGATTT--A-TA-ATAGTTCAA-T---TACATGTTGT-AC-ATNCGT--GT--CGAT-----T----A-TAGGA-T--TA---AGTC-G-TCCAAA-GGAT-TAGTGA---------C----T---GTT----CCG-T----AC---TC-TG-C-----------GGAGGGGCCCCAATGTA-AGGGGAAATTTTT----A-ATTAGAATAATTTG--A--CA--CTA-TCC-T-CTC---GG-GTACCCCT--TTCATCA-C--GTGATA----T-TTCTTT----CAACC----TGACANTCTATCAT-TCCCTCTCAAT-T-C-TGATTGGTCCGTTTCGTCAC---TTC-CTG--ATT----------TCTGA---TTG----GTTC-CTTCCCT-TAGGGCCG-CCCC-TT-GGC--TTACC-------TCTCGAC-------CA-----AA------TGAGCAAAATCTTAACCGTG---CA---------------TAAAATTGAA-C------GCACTATACTAC
gi|1 : AAATTTTATTCCATTACAGTTGGAATTTTCTCATAAGTACGACATAAATCATTTAT-ATGAT-TCTAACTGCCTGTATAC---TT-CG--TGTAAA------AT--A--ATTAGTTGTTTGACGGATTAT-TTGTAACAACCATGT-TTT--TCC----------C--------GT------CAAT-TTC-CGA--TTCAT-GTTCGTGATACATGTACACTTACTGTAGGTTAAATAC-CTAGGTTACA--CTACAG-TCACAAATAGTT---TACT----TTGTCAATCATTATCTGATATTTTTTTTTCATTTATCTCTATC-AAATGTTAA---AATACACCA-------AAAT---TAACA-ATGTCACTT--T-------------TTTG-----T---TCCT-AATTGATTT--AACA-ATAGCTCAAATCAATACAC-TTGT-AC-ATGCGT--GT--CGAT-----G----A-TAGGA-T--TA---AGTC-GGTCCAAA-GGAT-TAGTGA---------C----T---GTT----CCA-T----AC---TC-TG-C-----------GGAGGGGCCCCAATTTA-AGGGTAAAATTTT----A-ATTAGAATAATTTG--A--CA--CTA-TAC-T-CTC---GG-GTACCCCT--TTTATCA-C--GTGATA----T-TTCTTC----CAACC----TGACACTTTATCAT-TCTCTCTCAAT-A-C-TGATTGGTCCGTTTCGTCAC---TTC-CTG--ATT----------TCTGA---TTG----GTTC-CTTCCCT-TAGGGCCG-CCCC-TT-TTC--TTGCC-------TCTTGAC-------CA-----AA------TGAGCAAAATATTAATCGTG---TA---------------TCAAATTGACTC------GCTCTATACTAC
gi|10 : -AC-ATCCGTTTGT--TGAT-----T----A-CAGGA-T--TA---AGTC----CTAA-------TA-CGG---------CG---C---GTT----CCA-T----AC---TC-TG-A-----------GGAGGGGCCC-AATGTA-ATGGGAAATTTT-----A-ATTAGAATAATTTA--A--TA--CTA-TCC-T-CTC---GA-GTACCCCT--TTCATCA-C--GTGAAA----A-ATGTCT----AAACC----TGACAATCTATCGT-TCCCTGAC-AT-T-C-GGATTGGTC
gi|11 : tcTTAT---TATC-AAATATTAA---AATACAAAG-------ATAT---TAACATAT-TCACTT--T-AT--T-TACATATTCG-----T---CCCCCAATTGA-TT--A-TA-ATATTTCAA-T---TACATGTTGT-GG-ATGTGT--CG--CGGT-----T----A-TAGCC-TCGTAGCTGGTCTG-TCCAAGTGTATCTAGAGA---------T----TTTAGTT----TTT-C----GC---TC-TGCC-----------AGCAGCGCCCCGATCTA-t
gi|12 : TTAT---TATC-AAATATTAA---AATACAAAG-------ATAT---TAACATAT-TCACTT--T-AT--T-TACATATTCG-----T---CCCCCAATTGA-TT--A-TA-ATATTTCAA-T---TACATGTTGT-GG-ATGTGT--CG--CGGT-----T----A-TAGCC-TCGTAGCTGGTCTG-TCCAAGTGTATCTAGAGA---------T----TTTAGTT----TTT-C----GC---TC-TGCC-----------AGCAGCGCCCCGATCTA-
gi|13 : TCATCA-C--ATGATC----C-TTTTCT----AAACC----CAATGGTTTGTCAT-CTGATCTAAAT-T-C-TGATTGGTCCATTCCCTCAC---ATA-CTG--AAT----------TCTGA---TTG----GTTC-ATTCTCT-TAGGGCCGCCCCC-TT-GGC--TTACC-------TCTTGAC-------GA-----AA------TGAACAAAATTGTGA---TA---CA---------------T-AGATTGAA-CATGAAGACACTATACTAC
gi|14 : TT----CCA-T----AC---CC-TG-C-----------GGAGGG-CCCCAATGTA-AGGGGACATTTTT----A-ATTAGAATA-TTTG--A--TC--CTC-TCC-T-GTT---GG-GTCCCCCC--TTTATCA-C--GTGATA----T-T-CTTT----CAAAA----TGACACTCTATCAT-TCCCTCTCAAT-T-C-TGATTGGTCCGTTTTATCCA---TTC-CT
gi|15 : agcgacttcctgtatcgatatTATCTCTATC-AAAATTTAA---TATACACCAAAAGAATGAGT---TATCA-ATATCACTT--T-AT--TATACATATTTA-----TTCGCCCCTAATTGATTTTGA-TA-G-AGCT----T---TACATGTT---------CGT--GT----AT-----TTAAAA-TAGGA-T--TA---AGTT-G-TCCAAA-GGAT-TAGTGA---------C----T---
gi|16 : AA-GGAT-TAGTTA---------C----C-----C----CTGAT----AA---TC-TG-T-----------GGAGGGACCC-AAT-TA-AAGGGAAATTTTG----A-ATTAGAATGATTTG--A--CA--CTA-TCC-T-CTT---GG-GTACCCCT--TTCACCA-C--GTGATA----T-TTCTTT----CAACC----TGACA--CTATCAT-TCCCTCACAAtcctgatacgta
gi|17 : ACGACATAAATCATT--T-ATAAT-TTTAACCGCCT-TGTAC---AT-CAGCTAGAGA------AT--ATAATCAATTGTTTGACGAATTA--T-GTAACAATCGTGT-TAT--TCCTCTCAATT--C--------GCATCTGGCAAT-TTC-CCA--TTCAT-GTa
gi|18 : GATTGGTCCATTTCATCAC---TTC-CTG--ACA----------TCTTA---TTG----GTTC-CTATCCT-TAGGGTCG-GAGC----GGC--TTGCA-------ACTCGAC-------CAATTTTAA------CGAGC-AAATCTTACCCATG---GAC--------------TAAAATTGAA-C------GCACTATACTA
gi|19 : -CTG--ATT----------TGTGA---TTG----GTTC-TTCCGCTATCGGGCCT-TCCC-TTCAGC--TTACC-------TCTCGAC-------CC-----AA------TGTGCAAA---TTTACCGTG---CA---------------
gi|2 : ATCATT-AT-GTTAT-TCTAACCGT---TATAC---T---A--GA-AAG------AT--A---TCAATTATTTG-CG-ATT-T-T-ACTACTACCATGTGTATAATCT----------C---------T------CAAT-TTC--GA--T-AAT-GTTC------TATGTATGTT--CCGC--GTTCAAAACTCTAGTTTACAAACTACAGGTCCGAAGTGGCTACTTACTACAGTTGTC-ATCATCAT-TAACATTTGTC---CATCTATCTCTATCAAAATGTTAAAGGAATAC-CCA-------GAAT---TAAT-CACAGCACTT--TGATTGT-TACCTATTTAAATACT---GTCCTAATTG---T--A-TACATAGTTCAA-T---TACAGCCTATAACGATCCGT--AT--TTAT-----A----A-TAGGA-T--TAT--AGT--G-TCC-AA-GGA--TAGTGA---------C----T---CTTGAGACCT-G----AT---GC-TG-C------------TAAGGGC-----TATT-AGAGGAAAATTTT----ATATTAGAATAATTTG--ATGCA--CTC-TCC-T-TTCCGTGA-CTACCCTTTATTCA-AA-G--GTGCTA----TATTCTTTC---CAATA----T-ATCCTCTATCAT-TCCTTCTCAA--T-C-TGATTG--CCGTTTTGTCAT---TACTCTA----T----------TCTGA---TTGACCAGTTC-CTTCCGT---AGGCC--CCCC-TT-GTA--ATACC-------CCCCT-T-------CA-----AA------TGTGC-AAATTTT-ACCGTG---CAAACCTTACCCATGACTAAAAATTCA-C------ACACTATACTACaac
gi|20 : gtacac------AC--A--ATCCATTGCTTGACGGATTAT---GTAACAACCATGT-TAT--TCC----------TCTCAATTGGT------CAAT-TTC-CGA--TTCAT-GT
gi|3 : tTCTTTGTC-AAATTTTCA---AATACACCA-------GTATGTGTA--ATGTACCACTTACG-AT--T-AACATc
gi|3 : ggaaacaatactttatctattagtcatagatatttttaatggcaatcacatagagtattgagagttatctccAACATAATTTCATTACAACTGGAATTGTATCATAAGGACGAGATAAATCATT--T-GTGAT-TCTAAC--TCTGTGCGA---TT-GC--TATTAA------A---A--AT---TTATAT-ATGAATAATCT-ATA------GTGT-TAT--TTC----------C--------AT------AAATATACACGATGTTAATCGTAAGTGGTACAT-TACACATACTGcgtgtatatttatggaaataacactatagattattcatatataaatttttaatagcaatcgcacagagttagaatcacaaatgatttatctcgtccttatgatacaattccagttgtaatgaaattatgttgaattttatttaaggacttaacaaataatgcagacaaattatacataatgaaattttgtcaatctcgcatgtttcacttagaatttttgtataaatcaaactttctacattatttatctgaaatatacacattacatataagccttatacaatccattgcttgacggattatgtaacaaccatgttattcctctcaattggtcaatttccgattcatgt
gi|3 : ggaaacaatactttatctattagtcatagatatttttaatggcaatcacatagagtattgagagttatctcctctttgtcaaattttcaaatacacTATACACATTACA--TATAAGCCTTATAC--A--ATCCATTGCTTGACGGATTAT---GTAACAACCATGT-TAT--TCC----------TCTCAATTGGT------CAAT-TTC-CGA--TTCAT-GTgaattttatttaaggacttaacaaataatgcagacaaattatacataatgaaattttgtcaatctcgcatgtttcacttagaatttttgtataaatcaaactttctacattatttatctgaaatatacacattacatataagccttatacaatccattgcttgacggattatgtaacaaccatgttattcctctcaattggtcaatttccgattcatgt
gi|4 : ggaaacaatactttatctattagtcatagatatttttaatggcaatcacatagagtattgagagttatctcctctttgtcaaattttcaaatacaccagtatgtgtaatgtaccacttacgattaacatcgtgtatatttatggaaataacactatagattattcatatataaatttttaatagcaatcgcacagagttagaatcacaaatgatttatctcgtccttatgatacaattccagttgtaatgaaattatgttgaattttatttaaggacttaacaaataatgcagacaaattatacataatgaaattttgtcaatctcgcatgtttcacttagaatttttgtataaatcaaactttctacattatttatctgaaaTTACAGTTGGAATTGTTTTATAAGTACGACATAAATCA---ATCGTGAT-TCTAACCGCCT-TATAC---AG-C---TAGAGA------ATACA--ATCAATTGTTTGACGGATTA--T-GCAGCAGCGATAT-TAT--TCCTCTCAATTCAC--------ATCCAG--CAAT-TTC-CAA--TTCAT-GTCC
gi|4 : aaatcattcaaaagattacaaacatgaagtg-G-TCCAAA-GGAG-TATTGAATTTTGAGACAGTGT---GTT----TCG-T----AC---TC-TG-C-----------GGAGGGGTCC-AATGTA-AGGGGACATTTTT----A-ATTAGTATGATTAT--A--CA--CTT-TCC-A-ATC---GG-GTACCCCT--TTTATCA-C--GTGATA----T-TTCTTT----CAACC----TGACA-TATGTTAT-TCCCCCTCAAT-T-C-TGATTGGTCCGTTTCATCAC---TTC-CTG--ATT----------TCTGA---TTG----GTTC-CTTCCCT-TAGGGCCG-CCTCATT-GGC--aaaggagtattgaattttgagacagtgtgtttcgtactctgcggaggggtccaatgtaaggggacatttttaattagtatgattatacactttccaatcgggtaccccttttatcacgtgatatttctttcaacctgacatatgttattccccctcaattctgattggtccgtttcatcacttcctgatttctgattggttccttcccttagggccgcctcattggcat
gi|5 : aaatcattcaaaagattacaaacatgaagtgttacagttggaattgttttataagtacgacataaatcaatcgtgattctaaccgccttatacagctagagaatacaatcaattgtttgacggattatgcagcagcgatattattcctctcaattcacatccagcaatttccaattcatCA-T----AC---TCCTG-C-----------AAGGAGGCCCTA--GTA-AGGA-AGATTTTTTTAGA-CCTAGAAAAATTTGTGA--CGGGCTAGTCCGTGCTC---GGCGT--CCCTG-TTCATCT-CCTGTGACA----T-ATCTTTTCTTCAACC----TGACACTCTATCAA-TCCTCCTAAATGTGC-TGATTG--TCATTTCGGTACTCTTTC-TTG--ACTGGCACTTTCATCTAATATTTA----GTGC-CTCTC-------GCCG-CCCG-TT-GGCCATCATCTCTGGTATCTCAACACTGCAGCA-----AAATTTACCGAGCAAAACCTTACCCATGGTCTA---------------TAAAA-TAAA-C------GCACTATACTACat
gi|6 : TAT-AC-ATCCGT--GTATCGATACATGT----AATAGGAAT--TA---AGTT-G-TCGAAA-GGAG-GAGGGA---------C----T-----T----CCA-TGATTACGAATT-TG-TTCAAACGTTTTGGAGGGACCC-AGTATAGAAGGGAAACTTTT----A-AATAAAA-AATTT----------TTA-TAC-T-TTCA--GG-GTACCCCT--TTCATTAAC--GTGGTACATGT-ATGTTT----TAACCCACCTGACAATCTATCATGTCCCTCTAAAA-T-CTTAATTGGT-CGTTTTGTCGG---TTC-CTGAAATT----------TCTGA---AT-----GTTCAATTCCCT-TCCATCTG-CCCC--T-GGC---TGCC-------TCTt
gi|7 : A-GGAT-TAGTGA---------C----TT--G--------G-T----AC---TC-TG-G-----------AGAGGGGCCC-AATGTA-AGGGGAAATTTTT----A-ATTAGAATAATTTG--A--TA--CTC-TCC-T-CTC---GA-GTACCTCT--TTTATCA-C--GTGATA----T-TTCTTT-----AACC----TA--------------CCCTCTCAAT-T-C-TGATTGGTCCATTTTATCCC---TTC-CTG--ATT----------TCTGA---TTG----GTTC-CTTTCCT-TAGGGCCG-CCCCTTT-AGC--TTACC-------TCTCGAC-------CC-----AA------TGAGCAAAA-GTTAAC
gi|8 : GGGGGCTTAAGGTA-TGAGGACTTTTTT----A-AAGAGGACAATTTT-----CA--ATA-TCC-T-TTC---AG-GTACCCCT--TCCATCA-C--ATGATC----C-TTTTCT----AAACC----TTACTATCTATTAT-TCCATCTAAAT-T-C-AGATATGTCTGTTTTTTCAC---TTC-CTG--AAT----------TCTGA---TTG----GTTC-ATTCCAT-TACGTCTT-CCCC-TT-GGC--TTACC-------TCTCGAG-------CG-----AA------TGAG-GAAATCTTAACgagc
gi|9 : TCTTTATC-AAATTTTAA---AATACACCA-------GTCTGTGTA--ATGTACCACTT--gactaaat
gi|9 : tcAACTTGATTCCATTGCAGCTGGAATTGTATCATGAGTACGACATAAATCATT--T-GCGATCTCTAACacgattaaaatcgtgtatatttaacttcatcgattattgatatatacatttttaatagcaatcacatatagttagagatcgcaaatgatttatgtcgtactcatgatacaattccagctgcaatggaatcaagttaaattttaatcaaggacttaacacataatacacacaa
blockSeqs : A A A C C C G ACATTACATATAAGCCTTATAC TA A A TCT G G AA TCTCAATTCGCATCTGG A A TG C T GTGG G T . C A T T AA G CG ACT ACAG . . G . C C A A AGG AAAAGAATGAGT ACAT A TGATTGT AATACT C AT TG . C . . G G AACG C TTGTT ACATGT A A CG GCT CTG T TC ATTTTGAGACAGTGTGTTTCGT GAA C TTCAAACGTTTTG C G G TTAG T GTGACGGG AG G G CGT C TA A CT CATG A TCTTC CACC A G G G T C TCT T AA A GGCACTTTCA TAT ACCA A A C AT C CA TCTGGTA ACTGCAGCA ATTTAC A TT G CAAACCTTACCCATGAC A T . ATGAAG
blockSeqs : G T A . . C . ATCAGCTAGAGAAT . A G TT A . . TCTCAATTCACATCCAG . . . . A . . . C C . A . AGTATGTG ACAT A ACGATT TTCG C A . . . . . G G AC G GTATC TTAAA . . CG GCT CTG T TC CTCTTGAGACCTG . . CCA C C . . . GATGCA A . . A . G . . . . CC . G . . . . A . . . C . . . . . . TT . . . CAATTTT . A TC A GTCTA A T . .
blockSeqs : A . . . C . AGCTAGAGAATAC . C A T A . . TCTCAATTGGT . . . . C C T . T . AGTCTGTG TCA A TATTA T T A . . . . . G A GG G CGC T . . . T TG . T TTTTAGTTTTTC . . CCA C C . . . AATA C . . . . . . . . . A . C . . . . A . . . T . . . . . . T . . . GA . A TT T GAC A A . .
blockSeqs : . . . . . TTGCTATTAAA . C G T G . . TCTCAATTGGT . . . . C T . G . GATAT ATC A TATT T T . . . . . . C A GG C CGC T . . . . TG . T TTTTAGTTTTTC . . AG T G . . . GATC A . . . . . . . . . A . C . . . . G . . . T . . . . . . T . . . CC . A CC A CA . . . .
blockSeqs : . . . TAGAAAGAT . A G T A . . CAT . . . . . . . T . GATAT AT . TATT . AC C ATT T . . . . C . G CTTCCATGATT . . CG T A . . . GACA C . . . . . . . . . C . C . . . . A . . . C . . . . . . T . . . CA . G TC A CA
blockSeqs : . . . T A . . CT . . . . . . . T . AGAAT AT . . . GT A . . . . G . G CGCGTTCCAT . . TG . G . . . TACA T . . . . . . . . . C . A . . . . G . . . T . . . . . . T . . . CC . . G A
blockSeqs : . T CCCCTGAT . . CG . G . . . GATA A . . . . . . . . . C . A . . . . G . . . T . . . . . . T . . . CG . . . .
blockSeqs : . . CTTGGT . . CA . A . . . TCA C . . . . . . . . . T . . . . . . A . . . A . . . . . . . . . .
blockSeqs : . . . . GA . G . . . . A . . . . . . . . . A . . . . . . T . . . . . . . . . . . . .
blockSeqs : . . C . G . . . . . . . . . .
blockSeqs : . . .
blockSeqCons : ** ACGCTANANAATAC************ T*** TCTCAATTCGTATCG************ TATT****** A* *** CTG* CTCCGGTTCTT***********************
originalCons : AAACTTNATTCCATTACAGCTGGAATTGTNTCATAAGTACGACATAAATCATT-AT-GTGAT-TCTAACCGCCTGTATAC---TT-CA--TATAAA------AT--A--ATCAATTGTTTGACGGATTAT-T-GTAACAACCGTGT-TAT--TCC----------C--------GT------CAAT-TTC-CGA--TTCAT-GTTCGTGGTACATGTACGCTTACCGCAGGTTNAANACTCTAGNTTACAAACTACAGGTCNNAAGTGGCTACTTACTACAGTTGTCAATCATCATCTGACATTTNTCTTTCATTTATCTCTATC-AAATNTTAA---AATACACCG-------GNAT---TAACATATATCACTT--T-AT--T-TACATATTCG-----T---CCCCCAATTGATTT--A-TA-ATAGTTCAA-T---TACATGTTGT-AC-ATNCGT--GT--CGAT-----T----A-TAGGA-T--TA---AGTC-G-TCCAAA-GGAT-TAGTGA---------C----T---GTT----CCG-T----AC---TC-TG-C-----------GGAGGGGCCCCAATGTA-AGGGGAAATTTTT----A-ATTAGAATAATTTG--A--CA--CTA-TCC-T-CTC---GG-GTACCCCT--TTCATCA-C--GTGATA----T-TTCTTT----CAACC----TGACANTCTATCAT-TCCCTCTCAAT-T-C-TGATTGGTCCGTTTCGTCAC---TTC-CTG--ATT----------TCTGA---TTG----GTTC-CTTCCCT-TAGGGCCG-CCCC-TT-GGC--TTACC-------TCTCGAC-------CA-----AA------TGAGCAAAATCTTAACCGTG---CA---------------TAAAATTGAA-C------GCACTATACTAC
finalCons : AAACTTNATTCCATTACAGCTGGAATTGTNTCATAAGTACGACATAAATCATT--T-GTGAT-TCTAACCGCCTGTATACACGCTANANAATAC------------A--ATCAATTGTTTGACGGATTAT---GTAACAACCGTGT-TAT--TCCTCTCAATTCGTATCG------------CAAT-TTC-CGA--TTCAT-GTTCGTGGTACATGTACGCTTACCGCAGGTTNAANACTCTAGNTTACAAACTACAGGTCNNAAGTGGCTACTTACTACAGTTGTCAATCATCATCTGACATTTNTCTTTCATTTATCTCTATC-AAATNTTAA---AATACACCG-------GNAT---TAACATATATCACTTTATT------TACATATTCG-----T---CCCCCAATTGA-TT--A-TA-ATAGTTCAA-T---TACATGTTGT-AC-ATNCGT--GT--CGAT-----T----A-TAGGA-T--TA---AGTCTG-TCCAAA-GGAT-TAGTGACTCCGGTTCTT-----------------------AC---TC-TG-C-----------GGAGGGGCCCCAATGTA-AGGGGAAATTTTT----A-ATTAGAATAATTTG--A--CA--CTA-TCC-T-CTC---GG-GTACCCCT--TTCATCA-C--GTGATA----T-TTCTTT----CAACC----TGACANTCTATCAT-TCCCTCTCAAT-T-C-TGATTGGTCCGTTTCGTCAC---TTC-CTG--ATT----------TCTGA---TTG----GTTC-CTTCCCT-TAGGGCCG-CCCC-TT-GGC--TTACC-------TCTCGAC-------CA-----AA------TGAGCAAAATCTTAACCGTG---CA---------------TAAAATTGAA-C------GCACTATACTAC
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|21 ): TATTTTATTGCAATCACAATAGAGTATCTTCGGATAAATCATCTCCTCTTTATCAAATTATTCACAAACAC
Alignments
lowQualScore : 1 44444444444444444444444 11111 555555555 333333 11 11 1 11 1 222 2222 1 1 222 111 222222222222222 1111 1111111111 222222222 11 11 111 1111 1111111 2222222222 11 222 11 555555555555555555555555 22222222222222 1 1111111111 111 11111 1111111111 1111111 22222222222222 111111 55555555555555555555 222222
lowQualScore : 1 1 6 99 6 3 2 0 5 11111111111111111111111 66666 1 99 3 6 3 333333333 777777 88 88 1 1 5 1 88 5 22 111 3333 5 5 1 111 4 1 5 1 000 555555555555555 3333 7 4444444444 555555555 6 0 11 8 11 8 444 5 3 0000 3 4444444 4444444444 5 5 55 555 88 8 11 0 666666666666666666666666 666 3 22222222222222 5 3 3 8888 4 1111111111 44 4 4 111 4 99 3 55 7777 3 44444 7777 9 3 4 4 4 1 777 3 55 1 7777777777 777 8888 4 4 0 4 88 4 55 4444444 00000000000000 444444 5 55 2 00000000000000000000 5 6 8 333333
lowQualScore : . . . .. . . . . . ....................... ..... . .. . . . ......... ...... .. .. . . . . .. . .. ... .... . . . ... . . . . ... ............... .... . .......... ......... . . .. . .. . ... . . .... . ....... .......... . . .. ... .. . .. . ........................ ... . .............. . . . .... . .......... .. . . ... . .. . .. .... . ..... .... . . . . . . ... . .. . .......... ... .... . . . . .. . .. ....... .............. ...... . .. . .................... . . . ......
lowQualScore : 0 0 7 22 7 7 5 8 7 77777777777777777777777 77777 0 22 3 7 2 555555555 000000 55 00 0 0 5 0 55 0 00 000 5555 5 0 0 555 3 7 7 0 000 444444444444444 3333 1 5555555555 000000000 4 8 00 0 00 0 000 0 7 9999 0 7777777 6666666666 7 7 77 777 00 0 11 1 777777777777777777777777 444 6 44444444444444 6 1 3 5555 0 0000000000 88 0 0 000 0 55 6 00 7777 6 22222 7777 4 6 0 0 0 4 000 6 55 6 5555555555 000 5555 0 0 6 0 88 0 55 4444444 88888888888888 444444 1 44 2 55555555555555555555 6 0 0 000000
consensus : AAACTTNATTCCATTACAGCTGGAATTGTNTCATAAGTACGACATAAATCATT-TGT--GAT-TCTAACCGCCTGT-ATACA-C--GCTA--GAAA--------ATACA---ATCAATTGTTTGACGGATTAT--GTAACAACCATGT-TATTCCTCTCAATTCGT-TC---CAATTTCCGATTCATGTTCGTGATACATGTACGCTTACCGCAGGTTNAANACTCTAGNTTACAAACTACAGGTCNNAAGTGGCTACTTACTACAGTTGTCAATCATCATCTGACATTTNTCTTTCATTTATCTCTATC-AAATNTTAA---AATACACCG-------GNAT---TAACATATATCACTT--T-AT--T-TACATATTCG-----T---CCCCCAATTGATT--ATA-ATAG--TTCAA-T---TACATGTTGT-AC-ATNCGT--GT--CGAT-----T----A-TAGGA-T--TA---AGTCTGTCCAAA-GGAT-TAGTGACTT------C--AGT-----TCT-T-AC---TC-TG-C-----------GGAGGGGCCCCAATGTA-AGGGGAAATTTTT----A-ATTAGAATAATTTG--A--CA--CTA-TCC-T-CTC---GG-GTACCCCT--TTCATCA-C--GTGATA----T-TTCTTT----CAACC----TGACANTCTATCAT-TCCCTCTCAAT-T-C-TGATTGGTCCGTTTCGTCAC---TTC-CTG--ATT----------TCTGA---TTG----GTTC-CTTCCCT-TAGGGCCG-CCCC-TT-GGC--TTACC-------TCTCGAC-------CA-----AA------TGAGCAAAATCTTAACCGTG---CA---------------TAAAATTGAA-C------GCACTATACTAC
Reference ( family-779 ) : AAACTTNATTCCATTACAGCTGGAATTGTNTCATAAGTACGACATAAATCATT-TGT--GAT-TCTAACCGCCTGT-ATACA-C--GCTA--NANA--------ATACA---ATCAATTGTTTGACGGATTAT--GTAACAACCGTGT-TATTCCTCTCAATTCGTATC--GCAATTTCCGATTCATGTTCGTGGTACATGTACGCTTACCGCAGGTTNAANACTCTAGNTTACAAACTACAGGTCNNAAGTGGCTACTTACTACAGTTGTCAATCATCATCTGACATTTNTCTTTCATTTATCTCTATC-AAATNTTAA---AATACACCG-------GNAT---TAACATATATCACTT--T-AT--T-TACATATTCG-----T---CCCCCAATTGATT--ATA-ATAG--TTCAA-T---TACATGTTGT-AC-ATNCGT--GT--CGAT-----T----A-TAGGA-T--TA---AGTCTGTCCAAA-GGAT-TAGTGACTC------C--GGT-----TCT-T-AC---TC-TG-C-----------GGAGGGGCCCCAATGTA-AGGGGAAATTTTT----A-ATTAGAATAATTTG--A--CA--CTA-TCC-T-CTC---GG-GTACCCCT--TTCATCA-C--GTGATA----T-TTCTTT----CAACC----TGACANTCTATCAT-TCCCTCTCAAT-T-C-TGATTGGTCCGTTTCGTCAC---TTC-CTG--ATT----------TCTGA---TTG----GTTC-CTTCCCT-TAGGGCCG-CCCC-TT-GGC--TTACC-------TCTCGAC-------CA-----AA------TGAGCAAAATCTTAACCGTG---CA---------------TAAAATTGAA-C------GCACTATACTAC
gi|1 : AAATTTTATTCCATTACAGTTGGAATTTTCTCATAAGTACGACATAAATCATT-TATATGAT-TCTAACTGCCTGT-ATACTTC--G-TG--TAAA--------ATA-----ATTAGTTGTTTGACGGATTATTTGTAACAACCATGT-TTTTCC--------CGT------CAATTTCCGATTCATGTTCGTGATACATGTACACTTACTGTAGGTTAAATAC-CTAGGTTACA--CTACAG-TCACAAATAGTT---TACT----TTGTCAATCATTATCTGATATTTTTTTTTCATTTATCTCTATC-AAATGTTAA---AATACACCA-------AAAT---TAACA-ATGTCACTT--T-------------TTTG-----T---TCCT-AATTGATTTAACA-ATAG--CTCAAATCAATACAC-TTGT-AC-ATGCGT--GT--CGAT-----G----A-TAGGA-T--TA---AGTCGGTCCAAA-GGAT-TAGTGACT-----------GT-----TCCAT-AC---TC-TG-C-----------GGAGGGGCCCCAATTTA-AGGGTAAAATTTT----A-ATTAGAATAATTTG--A--CA--CTA-TAC-T-CTC---GG-GTACCCCT--TTTATCA-C--GTGATA----T-TTCTTC----CAACC----TGACACTTTATCAT-TCTCTCTCAAT-A-C-TGATTGGTCCGTTTCGTCAC---TTC-CTG--ATT----------TCTGA---TTG----GTTC-CTTCCCT-TAGGGCCG-CCCC-TT-TTC--TTGCC-------TCTTGAC-------CA-----AA------TGAGCAAAATATTAATCGTG---TA---------------TCAAATTGACTC------GCTCTATACTAC
gi|10 : -AC-ATCCGTTTGT--TGAT-----T----A-CAGGA-T--TA---AGTC---CTAA-------TA-CGGCGC----------GT-----TCCAT-AC---TC-TG-A-----------GGAGGGGCCC-AATGTA-ATGGGAAATTTT-----A-ATTAGAATAATTTA--A--TA--CTA-TCC-T-CTC---GA-GTACCCCT--TTCATCA-C--GTGAAA----A-ATGTCT----AAACC----TGACAATCTATCGT-TCCCTGAC-AT-T-C-GGATTGGTC
gi|11 : tcTTAT---TATC-AAATATTAA---AATACAAAG-------ATAT---TAACATAT-TCACTT--T-AT--T-TACATATTCG-----T---CCCCCAATTGATT--ATA-ATAT--TTCAA-T---TACATGTTGT-GG-ATGTGT--CG--CGGT-----T----A-TAGCC-TCGTAGCTGGTCTGTCCAAGTGTATCTAGAGATTT------T--AGT-----TTT-TCGC---TC-TGCC-----------AGCAGCGCCCCGATCTA-t
gi|12 : TTAT---TATC-AAATATTAA---AATACAAAG-------ATAT---TAACATAT-TCACTT--T-AT--T-TACATATTCG-----T---CCCCCAATTGATT--ATA-ATAT--TTCAA-T---TACATGTTGT-GG-ATGTGT--CG--CGGT-----T----A-TAGCC-TCGTAGCTGGTCTGTCCAAGTGTATCTAGAGATTT------T--AGT-----TTT-TCGC---TC-TGCC-----------AGCAGCGCCCCGATCTA-
gi|13 : TCATCA-C--ATGATC----C-TTTTCT----AAACC----CAATGGTTTGTCAT-CTGATCTAAAT-T-C-TGATTGGTCCATTCCCTCAC---ATA-CTG--AAT----------TCTGA---TTG----GTTC-ATTCTCT-TAGGGCCGCCCCC-TT-GGC--TTACC-------TCTTGAC-------GA-----AA------TGAACAAAATTGTGA---TA---CA---------------T-AGATTGAA-CATGAAGACACTATACTAC
gi|14 : -T-AC---CC-TG-C-----------GGAGGG-CCCCAATGTA-AGGGGACATTTTT----A-ATTAGAATA-TTTG--A--TC--CTC-TCC-T-GTT---GG-GTCCCCCC--TTTATCA-C--GTGATA----T-T-CTTT----CAAAA----TGACACTCTATCAT-TCCCTCTCAAT-T-C-TGATTGGTCCGTTTTATCCA---TTC-CT
gi|15 : agcgacttcctgtatcgatatttccaTATCTCTATC-AAAATTTAA---TATACACCAAAAGAATGAGT---TATCA-ATATCACTT--T-AT--TATACATATTTA-----TTCGCCCCTAATTGATT--TTG-ATAGAGCT----T---TACATGTT---------CGT--GT----AT-----TTAAAA-TAGGA-T--TA---AGT-TGTCCAAA-GGAT-TAGTGACTT------C--
gi|16 : AA-GGAT-TAGTTACCC------C--TGA-----T-----AA---TC-TG-T-----------GGAGGGACCC-AAT-TA-AAGGGAAATTTTG----A-ATTAGAATGATTTG--A--CA--CTA-TCC-T-CTT---GG-GTACCCCT--TTCACCA-C--GTGATA----T-TTCTTT----CAACC----TGACA--CTATCAT-TCCCTCACAActgatacgta
gi|17 : ACGACATAAATCATT-TAT--AAT-TTTAACCGCCT-T-GTACA-TCAGCTA--GAGA--------ATATA---ATCAATTGTTTGACGAATTAT--GTAACAATCGTGT-TATTCCTCTCAATTCGCATCTGGCAATTTCCCATTCATGTa
gi|18 : GATTGGTCCATTTCATCAC---TTC-CTG--ACA----------TCTTA---TTG----GTTC-CTATCCT-TAGGGTCG-GAGC----GGC--TTGCA-------ACTCGAC-------CAATTTTAA------CGAGC-AAATCTTACCCATG---GAC--------------TAAAATTGAA-C------GCACTATACTA
gi|19 : -CTG--ATT----------TGTGA---TTG----GTTC-TTCCGCTATCGGGCCT-TCCC-TTCAGC--TTACC-------TCTCGAC-------CC-----AA------TGTGCAAA---TTTACCGTG---CA---------------
gi|2 : ATCATTATGT--TAT-TCTAACCGT---T-ATAC-------TA--GAAAG-------ATA------TCAATTATTTG-CG-ATTTT--ACTACTACCATGTGTAT-------AATC----TC--TCAATTTC-GAT-AATGTTC------TATGTATGTT--CCGC--GTTCAAAACTCTAGTTTACAAACTACAGGTCCGAAGTGGCTACTTACTACAGTTGTC-ATCATCAT-TAACATTTGTC---CATCTATCTCTATCAAAATGTTAAAGGAATAC-CCA-------GAAT---TAAT-CACAGCACTT--TGATTGT-TACCTATTTAAATACT---GTCCTAATTG--T--ATACATAG--TTCAA-T---TACAGCCTATAACGATCCGT--AT--TTAT-----A----A-TAGGA-T--TAT--AG--TGTCC-AA-GGA--TAGTGACTC------TTGAGA-----CCT-G-AT---GC-TG-C------------TAAGGGC-----TATT-AGAGGAAAATTTT----ATATTAGAATAATTTG--ATGCA--CTC-TCC-T-TTCCGTGA-CTACCCTTTATTCA-AA-G--GTGCTA----TATTCTTTC---CAATA----T-ATCCTCTATCAT-TCCTTCTCAA--T-C-TGATTG--CCGTTTTGTCAT---TACTCTA----T----------TCTGA---TTGACCAGTTC-CTTCCGT---AGGCC--CCCC-TT-GTA--ATACC-------CCCCT-T-------CA-----AA------TGTGC-AAATTTT-ACCGTG---CAAACCTTACCCATGACTAAAAATTCA-C------ACACTATACTACaac
gi|20 : gtacacTACA---ATCCATTGCTTGACGGATTAT--GTAACAACCATGT-TATTCCTCTCAATTGGT------CAATTTCCGATTCATGT
gi|3 : TCTTTGTC-AAATTTTCA---AATACACCA-------GTATGTGTA--ATGTACCACTTACG-AT--T-AACATc
gi|3 : ggaaacaatactttatctattagtcatagatatttttaatggcaatcacatagagtattgagagttatctccAACATAATTTCATTACAACTGGAATTGTATCATAAGGACGAGATAAATCATT-TGT--GAT-TCTAAC--TCTGT-cgtgtatatttatggaaataacactatagattattcatatataaatttttaatagcaatcgcacagagttagaatcacaaatgatttatctcgtccttatgatacaattccagttgtaatgaaattatgttgaattttatttaaggacttaacaaataatgcagacaaattatacataatgaaattttgtcaatctcgcatgtttcacttagaatttttgtataaatcaaactttctacattatttatctgaaatatacacattacatataagccttatacaatccattgcttgacggattatgtaacaaccatgttattcctctcaattggtcaatttccgattcatgt
gi|3 : ggaaacaatactttatctattagtcatagatatttttaatggcaatcacatagagtattgagagttatctcctctttgtcaaattttcaaatacaccagtatgtgtaatgtaccacttacgattaacatcgtgtatatttatggaaataacactatagattattcatatataaatttttaatagcaatcgcT-ATACA-C--ATTA--CATATAAGCCTTATACA---ATCCATTGCTTGACGGATTAT--GTAACAACCATGT-TATTCCTCTCAATTGGT------CAATTTCCGATTCATGTgaattttatttaaggacttaacaaataatgcagacaaattatacataatgaaattttgtcaatctcgcatgtttcacttagaatttttgtataaatcaaactttctacattatttatctgaaatatacacattacatataagccttatacaatccattgcttgacggattatgtaacaaccatgttattcctctcaattggtcaatttccgattcatgt
gi|4 : ggaaacaatactttatctattagtcatagatatttttaatggcaatcacatagagtattgagagttatctcctctttgtcaaattttcaaatacaccagtatgtgtaatgtaccacttacgattaacatcgtgtatatttatggaaataacactatagattattcatatataaatttttaatagcaatcgcacagagttagaatcacaaatgatttatctcgtccttatgatacaattccagttgtaatgaaattatgttgaattttatttaaggacttaacaaataatgcagacaaattatacataatgaaattttgtcaatctcgcatgtttcacttagaatttttgtataaatcaaactttctacattatttatctgaaaTTACAGTTGGAATTGTTTTATAAGTACGACATAAATCAAT-CGT--GAT-TCTAACCGCCT-T-ATACA----GCTA--GAGA--------ATACA---ATCAATTGTTTGACGGATTAT--GCAGCAGCGATAT-TATTCCTCTCAATTCACATCCAGCAATTTCCAATTCATGTCC
gi|4 : aaatcattcaaaagattacaaacatgaagtgTGTCCAAA-GGAG-TATTGAATTTTGAGAC--AGTGTGTTTCG-T-AC---TC-TG-C-----------GGAGGGGTCC-AATGTA-AGGGGACATTTTT----A-ATTAGTATGATTAT--A--CA--CTT-TCC-A-ATC---GG-GTACCCCT--TTTATCA-C--GTGATA----T-TTCTTT----CAACC----TGACA-TATGTTAT-TCCCCCTCAAT-T-C-TGATTGGTCCGTTTCATCAC---TTC-CTG--ATT----------TCTGA---TTG----GTTC-CTTCCCT-TAGGGCCG-CCTCATT-GGC--aaaggagtattgaattttgagacagtgtgtttcgtactctgcggaggggtccaatgtaaggggacatttttaattagtatgattatacactttccaatcgggtaccccttttatcacgtgatatttctttcaacctgacatatgttattccccctcaattctgattggtccgtttcatcacttcctgatttctgattggttccttcccttagggccgcctcattggcat
gi|5 : aaatcattcaaaagattacaaacatgaagtgttacagttggaattgttttataagtacgacataaatcaatcgtgattctaaccgccttatacagctagagaatacaatcaattgtttgacggattatgcagcagcgatattattcctctcaattcacatccagcaatttccaattca-T-AC---TCCTG-C-----------AAGGAGGCCCTA--GTA-AGGA-AGATTTTTTTAGA-CCTAGAAAAATTTGTGA--CGGGCTAGTCCGTGCTC---GGCGT--CCCTG-TTCATCT-CCTGTGACA----T-ATCTTTTCTTCAACC----TGACACTCTATCAA-TCCTCCTAAATGTGC-TGATTG--TCATTTCGGTACTCTTTC-TTG--ACTGGCACTTTCATCTAATATTTA----GTGC-CTCTC-------GCCG-CCCG-TT-GGCCATCATCTCTGGTATCTCAACACTGCAGCA-----AAATTTACCGAGCAAAACCTTACCCATGGTCTA---------------TAAAA-TAAA-C------GCACTATACTACat
gi|6 : caTAT-AC-ATCCGT--GTATCGATACATGT----AATAGGAAT--TA---AGT-TGTCGAAA-GGAG-GAGGGACTT------C--CAT-----GAT-T-ACGAATT-TG-TTCAAACGTTTTGGAGGGACCC-AGTATAGAAGGGAAACTTTT----A-AATAAAA-AATTT----------TTA-TAC-T-TTCA--GG-GTACCCCT--TTCATTAAC--GTGGTACATGT-ATGTTT----TAACCCACCTGACAATCTATCATGTCCCTCTAAAA-T-CTTAATTGGT-CGTTTTGTCGG---TTC-CTGAAATT----------TCTGA---AT-----GTTCAATTCCCT-TCCATCTG-CCCC--T-GGC---TGCC-------TCTt
gi|7 : A-GGAT-TAGTGACTT---------GGT-----------AC---TC-TG-G-----------AGAGGGGCCC-AATGTA-AGGGGAAATTTTT----A-ATTAGAATAATTTG--A--TA--CTC-TCC-T-CTC---GA-GTACCTCT--TTTATCA-C--GTGATA----T-TTCTTT-----AACC----TA--------------CCCTCTCAAT-T-C-TGATTGGTCCATTTTATCCC---TTC-CTG--ATT----------TCTGA---TTG----GTTC-CTTTCCT-TAGGGCCG-CCCCTTT-AGC--TTACC-------TCTCGAC-------CC-----AA------TGAGCAAAA-GTTAAC
gi|8 : GGGGGCTTAAGGTA-TGAGGACTTTTTT----A-AAGAGGACAATTTT-----CA--ATA-TCC-T-TTC---AG-GTACCCCT--TCCATCA-C--ATGATC----C-TTTTCT----AAACC----TTACTATCTATTAT-TCCATCTAAAT-T-C-AGATATGTCTGTTTTTTCAC---TTC-CTG--AAT----------TCTGA---TTG----GTTC-ATTCCAT-TACGTCTT-CCCC-TT-GGC--TTACC-------TCTCGAG-------CG-----AA------TGAG-GAAATCTTAACgagc
gi|9 : TCTTTATC-AAATTTTAA---AATACACCA-------GTCTGTGTA--ATGTACCACTT--gactaaat
gi|9 : tcAACTTGATTCCATTGCAGCTGGAATTGTATCATGAGTACGACATAAATCATT-TGC--GATCTCTAACTATATGTGAT----T--GCTATTAAAA--------ATGTATATATCAATacgattaaaatcgtgtatatttaacttcatcgattattgatatatacatttttaatagcaatcacatatagttagagatcgcaaatgatttatgtcgtactcatgatacaattccagctgcaatggaatcaagttaaattttaatcaaggacttaacacataatacacacaa
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|21 ): TATTTTATTGCAATCACAATAGAGTATCTTCGGATAAATCATCTCCTCTTTATCAAATTATTCACAAACAC