lowQualScore : 2 1111111 111 11111 1 22 1111 1 666666666666 2222 111111111 1 44444 7777777777777777 333333 222222222 6666666666666 1 1 1 1111 1111111 11 44444
lowQualScore : 0 4 8888 6666666 4 555 777 77777 66 66 3 66 4 5 5 3 00 8 5 0000 5 8 5 0 333333333333 8888 5 444444444 999 33 7 4 5 11111 5 3 7 7777777777777777 0 3 4 33 7 000000 7 3 444444444 99 6 0000000000000 6 0 6 0 9 0 11 8 3 0 66 0000 5 44 4444444 1 33 7 66666
lowQualScore : . . .... ....... . ... ... ..... .. .. . .. . . . . .. . . .... . . . . ............ .... . ......... ... .. . . . ..... . . . ................ . . . .. . ...... . . ......... .. . ............. . . . . . . .. . . . .. .... . .. ....... . .. . .....
lowQualScore : 0 0 5555 0000000 5 666 888 22222 11 11 9 33 4 0 0 9 66 2 0 6666 1 6 7 1 111111111111 1111 0 444444444 444 44 3 3 7 77777 7 7 8 2222222222222222 6 0 2 22 3 888888 3 2 888888888 22 7 5555555555555 0 0 0 8 0 8 66 0 2 8 99 6666 0 66 4444444 5 88 8 00000
consensus : AGTGCTCTAGAATTACGCTCTCCCGT-C----AC------CCGAG---GTGA---G-----T--TTTTTTTT--CGATC-GGG-AGAGTTGATCACCCCTA-CCTG-CTCACCCGTTC-GGGAAAGCGTTTT-T----CTGAAATATTA-TTATCATTACGAAAA-GATN-ACATAAATTATATGGTAAAAGT-GAT----C----AGGT-TATTGTGTCAAATATGCGAAAAGAATTTCAAAAAGTCGTGCA-ACTTA-TATTAT-ATTTTCAACACTGCGATCGTGAAC--T-T-----------TCAATCGTGGCCATCAAGAACGAAGATCAAACCCGGAAGCAAATAAAC--G-AATAGTAAAATAAAAACCGGGACGGAAACAGAAAAT-ACCGCGAACTGGTCAAGGTT--TAGTTTT-CCGTTTGCAACACT---ACGGTA-TTTCTGGTTGTTTTGTATTTTGTATTCATGTTTGGATTTGGGTGAGTAATGAC-AAGTGGTGGGTGAGTGAATTTTT--A----C-CTGCC-ACT-------CACCCGTGGGTGAGTG--AAATTTT-TT--AAAAATCCT
Reference ( gi|1 ) : AGTGCTCTAGAATTACGCTATCCCGT-C----AC------TCAAG---GTGA---G-----T--TTTTTTTT--CGATC-GGG-AGAGTTGATCACCCCTA-CCTG-CTCACCCGTTC-AGGAAAGCATTTT-T----CTGAAATAGTA-TTATCATTACAAAAAAGATA-ACATAAATTATATGGTAAAAGT-GAT----C----AGAT-TATTGTGTCAAATATGCAAAAAGAATTTCCAAAAGTCATGCA-ACTTAATATTAT-ATTTTCAACACTGCGATCGTGAAC--T-T-----------TCAATTGTGGCCATCAAGAATGAAAATCAAACCCGGAAACAAATAAAT--G-TATAGTAAAATAAAAACCGGGACGGAAACAGAAAAT-ACTGCGATCTGGTCAAGGTT--TAGTTTT-TCGTTTGCAACACT---ACGGTACTTTCTGGTTG-TTGGTA-TTTGTATTTATGTTTGGATTTGGGTGAGTAATGAC-AAGTGGTGGGTGAGTGAATTTTT--A----C-CTGCC-ACT-------CACCCATGGGTGAGTG--AAATTTT-TTAAAAAAATCCT
gi|7 : AGTGCTCTAGAATTACGCTCTCCCGT-C----AC------CCGAG---GTGA---G-----T--AGTTTTAT--CGATC-TGG-AGAGTTGATCACCCCTA-CCGG-CTCACCCGTTC-GGGAAAGCGTTTT-T----CTGAAA---TA-TTATCGTTACAAAAACGACT-ACAGAAGT--TATGGTAAAAGT-GAT----C----AGGT-TATTGTGTCAAATATGCAAGAAGAATTTCAAAAAGTAATGCA-ACT---TATTAT-ATTTTCAACACTGC
gi|9 : AGTGCTCTAGAATTACACTCTACCAT-C----AC------CCGAG---GTGA---G-----GGGTTTTTTTT--CTGTC-GGG-AGAGTTGATCACCCTGA-CCTG-CTCACTCGTTC-GGGAAAGTGTTTT-TTTTTCTGAAATATTA-TTAACATTACG-------------TAAATT-T-TGCTAAAAATTGAT----CTGACAGGT-TAT-GTATCAAATATGTGAAAA
gi|10 : AGTGCTCTAGAATTACACTCTCCCAT-C----AC------CCGAGTGAGTGG---G-----T--TTTTTTTTTTCGATC-GGGGAGAGTTGATCACCCCTA-CCTGTCTCA-CCGTTC--GGGAAGCCTTTT-T----CTG-AATACTA-TTATCATTA
gi|11 : AGTGCCTTAGAATTACACTCTCCCAT-C----AC------CCGAGTGAGTGG---GTT---T--TTTTTTTT--CGATCGGGG-AGAGTTGATCA-CCCTA-CCTG-CTCA-CCGTTC--GGGAAGCGTTTT-T----CTG-AATACTA-TTATCATTA
gi|13 : AGTGCTCTAGAATTATGCC-TCCTGTCC----AC------CCGAG---GTGA---G-----T--GTTTTTTT--C-ATC--GG-AGAG-TGATCACCCCTA-CCTG--TCATCCGTTCGGGGAAAGCG-TTT-T----CTGAA
gi|18 : AGTGCTCTAGAATTATGCTCTCCTGT-C----AC------CCGA
gi|2 : GTGCTCTAGAATTACACTCTCC-GT-CTGACACCCGAGGTCAAG---GTCA---G-----T--GTTTTTTT--CTATC-AGG-AGAGTTGATCACCCCCAATCTT-TT------TT-----------TTTT-T----CTGAAATATTA-TTATCATT----------TATACATAAAT--TATGGTA------------------------ATTGTGTCAAATATCTAAATAGAATTTCTCAAAGTCATGCA-AC------TTAT-ATTTTAAGCATTTCGATCGTGAAC--T-CACTGAACTGTGTCAATCGTGGCCACCAAGAACGAAAATCAAACCCGGAAACAAATAAACAAG--ATAGTAAAATAAAAACCGGAGTGG-------AAAT-ATCGGGAACTTGTCAAGGTT--TAGTTTTATCATTTGCAACACT---GTGGCAATTTCTGGTTG-TTTGTA-T---AAATTGTGTTTGGA------TGAGAAATGAA-AAGAGGTGGGTGAGTGAATTTTT--A----T-CTACC-ACC-------CACCCATGGGTGAGTGCAAAATTTT-----AAAAATCCT
gi|8 : GTGCTTAAAAATTACACT--CCCGT-C----AC------CTGAG---GTGA---GAGGTGT--TTTTTTTT--CTATC-AGG-AGAGTTGAT--CCCCTA--CTG-CTCA-CCGTTT-GGGAAAGTGTTTTGT----CTGGAATATTATTTACTATTAC-------ATA-----AAAT--TATGGTAAAAGT-GATCTAAC----AGGT-TA-TGTGTCAAATATGTGAAAAGAA---CAAAAAGTCATGTA-ACTTATTA-TAA-ATTTat
gi|14 : TGCTCTAGAATTACACTCTCCCGT-C----AC------CCGGG---GTGAGTGG-----T--TTTTTTTT--CGATC-GGG-AGAGTaaaaat
gi|17 : TGCTCTAGAATTATGCTCTCCTGT-C----AC------CCGAT---TTGA---G-----T--Tggtttttagctcac
gi|3 : catTTTTT--CGATC-GGG-AGAGTTGATCATGCTTA-CTTG-CTCACCCGTTC-GGGAAAGCGTTTT-T----CTGAAATA----TTATCTTTGCAAAAAAGATT-ACATAACTTAT--GGTAAAAGT-GAT----C----AGGT-TA---------ATATGCAAAAAGAATTTCAAAAAGTCATGCA-ACTTA---TTAA-ATTTTCAACACTGCAATCATGAA---------------------TTGTGGCCATCAAGAACGAAAATCAAACCAGGAAATAGATAAAC--G-AATAGTAAAATAAAAACTGGAACGGAAACAGAAAAT-ACCACGAACTGGTCAAGGTT--TAGTTTT-TCGTTTGCAACACT---ACGGTACTTTCTGGTTG-TTGGTA-TTTGTACTTATGTTTGGATTTGGGTGAGTAATGAC-AAGTGGTGGGTGAGTGAATTTTT--A----C-CTGTC-ACT-------CAACCGTGGGTGAGTG--AAAATGT-TC--AAAAATCCTgggagt
gi|5 : tg-ACATAAATTAT--GGTAAAAGT-GAT----C----AGGT-TATTGTGTCAAATATGCAAAAAGAATTTCAAAAAGTAGTGCA-ACTTA---TTAT-ATATTTAACACTACGATCGTGAACCGT-G-----------TCAATCGTGGCCATCAAGAATGAAGATCAAATCCAGAAGCAA-TAAAC--G-AATAGTAAAATAAAAACCGGGACGGAAACAGAAAAT-ACCGCAAACTGGTCAAGGTT--TAGTTTT-CCGTTTGCAAC-------------TTTCTGGTTG-TTTGTA-TTTGTATTCATGTTTGGATTTGGGTGAGTAATGAC-AAGTGGTGGGTGAGTGAATTAAT--A----C-CTGCC-ACT-------CACCAGTGGGTGAGTG--AAA-ATT-TTAAAAAA
gi|4 : aat-ACATAAATTA-ATGGTAAAAGT-GAT----C----AGGTCTATTGTGTCAAATATGCAAAAAGAATTTCAAAAAGTAGTGCA-ACT----ATTATTATTT--AACACTACGATCGTGAAC--G-TG----------TCCATCGTGGCCATCAAGAATGAAGATCAAATCCAGAAGC-AATAAAC--GACATAGTAAAAT-AAAACCGGGACGGAAACAGAAAATCAC-GCAAACTGGTCAAGGTTTCTAGTTTT-CCGTTTGCA-------------ACTTTCTGGTTGTTTTGTATTTTGTATTCATGTTTGG-TTTGGGTGAGTAATGACTAAGTGGTGGGTGAGTGAA-TTAT--A----C-CTGCT-ACT-------CACAGCTGGGTGAGTG--AAAATTT-T--AAAAAATC
gi|6 : atAATTA-ATGGTAAAAGT-GAT----C----AGTC-TATTGTGTCAAATATGCAAAAG--ATTTC--AAAATAGTGTATACTTA-TATTAT-----TTAA-ACT-CGATCGTGAACG-TGT-----------TCAATCGTGGCCATCAAGAA-GAAGATCAAATC-AGAAGCAA-TAAAC--G-AATAGTAAAATAAAAACCGGGACGGAAACAGAT--T-AACGCAAACTGGTCAAGTTG--TA-TTTT-CCGTTTGCAAC-------------TTTCTGGTTGTTTTGTATTTTGTA-TCATG-TTGGATTTGGGTGAGTAATGAC-AAGTGGTGGGTGAGTGAA-TTAT--A----C-CTGCCAACT-------CA
gi|12 : CATCAAGGATTGAAATCAAACCCAGAAACAAATAAAC--G-AATAGTAAAAT----------------ACAGGAAA----------CTGTTCAAGGTT--TGGCTTT-TCATTTATAACACTATCATGGTGATTTCCAGCT
gi|15 : GGGTGAGTGAATTTTT--A----C-CTTTA-ACTCAATCGACATCTGTTGATGAGTG--AATTTTTCTT--AAAAATCCT
gi|3 : GGATTTTTGAA----CATTTTC-ACT-------CACCCACGGTTGAGTG--Aagagca
gi|2 : tgtttttcgatcgggagagttgatcatgcttacttgctcacccgttcgggaaagcgtttttctgaaatattatctttgcaaaaaagattacataacttatggtaaaagtgatcaggttaatatgcaaaaagaatttcaaaaagtcatgcaacttattaaattttcaacactgcaatcatgaattgtggccatcaagaacgaaaatcaaaccaggaaatagataaacgaatagtaaaataaaaactggaacggaaacagaaaataccacgaactggtcaaggtttagtttttcgtttgcaacactacggtactttctggttgttggtatttgtacttatgtttggatttgggtgagtaatgacaagtggtgggtgagtgaatttttacctgGGATTTTT--AAAATT-TTGC--ACT-------CACCCATGGGTGGGTG--t
gi|16 : gtgctctagaattacactctccgtctgacacccgaggtcaaggtcagtgtttttttctatcaggagagttgatcacccccaatctttttttttttctgaaatattattatcatttatacataaattatggtaattgtgtcaaatatctaaatagaatttctcaaagtcatgcaacttatattttaagcatttcgatcgtgaactcactgaactgtgtcaatcgtggccaccaagaacgaaaatcaaacccggaaacaaataaacaagatagtaaaataaaaaccggagtggaaatatcgggaacttgtcaaggtttagttttatcatttgcaacactgtggcaatttctggttgtttgtataaattgtgtttggatgagaaatgaaaagaggtgggtgagtgaatttttatctacTGCC-GCT-------TACTCGTGGTTGAGTGAAAAATCTT-T----AAAATCCTtat
Alignments
lowQualScore : 111 11111 1 5555555555 111 111111111 111 6666666666666666 1 1 66666666666666 1 1111111
lowQualScore : 3 7777 444 8888 55 777 55555 55 55 2 44 4 4 4 1 4 4 4 9999 3 0 3 0 1111111111 999 4 111111111 4 1 6 2 5 444 3 55 1 1 5 1111111111111111 6 0 2 1 1 0 777 3 0 77 5 11111111111111 7 5 7 3 3 6 5 2 5 6666666 9 5 888
lowQualScore : . .... ... .... .. ... ..... .. .. . .. . . . . . . . .... . . . . .......... ... . ......... . . . . . ... . .. . . . ................ . . . . . . ... . . .. . .............. . . . . . . . . . ....... . . ...
lowQualScore : 6 7777 000 5555 55 000 55555 55 55 5 77 0 4 4 2 4 6 4 4444 6 8 2 2 5555555555 222 4 777777777 4 9 2 5 0 444 2 11 6 7 3 5555555555555555 3 7 0 4 4 7 777 0 4 99 7 77777777777777 3 3 3 2 7 7 0 1 0 2222222 6 7 444
consensus : AGTGCTCTAGAATTACGCTCTCCCGT-C----ACCCGAG---GT----G--A---G-----T--TTTTTTTT--CGATC-GGG-AGAGTTGATCACCCCTA-CCTG-CTCACCCGTTC-GGGAAAGCGTTTT-T----CTGAAATATTATTATCATTACAAAAA-GATTACATAAATTATATGGTAAAAGT-GAT----C----AGGT-TATTGTGTCAAATATGCGAAAAGAATTTCAAAAAGTCGTGCA-ACTTA-TATTAT-ATTTTCAACACTGCGATCGTGAAC--T-T-----------TCAATCGTGGCCATCAAGAACGAAGATCAAACCCGGAAGCAAATAAACGA-ATAGTAAAATAAAAACCGGGACGGAAACAGAAAATACCGCGAACTGGTCAAGGTTT--AGTTTT-CCGTTTGCAACACT---ACGGT-A-TTTCTGGTTGTTT-GTATTTTGTATTCATGTTTGGATTTGGGTGAGTAATGAC-AAGTGGTGGGTGAGTGAATTTNTACCTGCC-ACT-------CACCCGTGGGTGAGTGAAAATTT-TT--AAAAATCCT
Reference ( family-7764 ) : AGTGCTCTAGAATTACGCTCTCCCGT-C----ACCCGAG---GT----G--A---G-----T--TTTTTTTT--CGATC-GGG-AGAGTTGATCACCCCTA-CCTG-CTCACCCGTTC-GGGAAAGCGTTTT-T----CTGAAATATTATTATCATTACGAAAA-GATNACATAAATTATATGGTAAAAGT-GAT----C----AGGT-TATTGTGTCAAATATGCGAAAAGAATTTCAAAAAGTCGTGCA-ACTTA-TATTAT-ATTTTCAACACTGCGATCGTGAAC--T-T-----------TCAATCGTGGCCATCAAGAACGAAGATCAAACCCGGAAGCAAATAAACGA-ATAGTAAAATAAAAACCGGGACGGAAACAGAAAATACCGCGAACTGGTCAAGGTTT--AGTTTT-CCGTTTGCAACACT---ACGGT-A-TTTCTGGTTGTTTTGTATTTTGTATTCATGTTTGGATTTGGGTGAGTAATGAC-AAGTGGTGGGTGAGTGAATTTTTACCTGCC-ACT-------CACCCGTGGGTGAGTGAAATTTT-TT--AAAAATCCT
gi|1 : AGTGCTCTAGAATTACGCTATCCCGT-C----ACTCAAG---GT----G--A---G-----T--TTTTTTTT--CGATC-GGG-AGAGTTGATCACCCCTA-CCTG-CTCACCCGTTC-AGGAAAGCATTTT-T----CTGAAATAGTATTATCATTACAAAAAAGATAACATAAATTATATGGTAAAAGT-GAT----C----AGAT-TATTGTGTCAAATATGCAAAAAGAATTTCCAAAAGTCATGCA-ACTTAATATTAT-ATTTTCAACACTGCGATCGTGAAC--T-T-----------TCAATTGTGGCCATCAAGAATGAAAATCAAACCCGGAAACAAATAAATGT-ATAGTAAAATAAAAACCGGGACGGAAACAGAAAATACTGCGATCTGGTCAAGGTTT--AGTTTT-TCGTTTGCAACACT---ACGGT-ACTTTCTGGTTG-TTGGTA-TTTGTATTTATGTTTGGATTTGGGTGAGTAATGAC-AAGTGGTGGGTGAGTGAATTTTTACCTGCC-ACT-------CACCCATGGGTGAGTGAAATTTT-TTAAAAAAATCCT
gi|10 : AGTGCTCTAGAATTACACTCTCCCAT-C----ACCCGAGTGAGT----G--G---G-----T--TTTTTTTTTTCGATC-GGGGAGAGTTGATCACCCCTA-CCTGTCTCA-CCGTTC-GGG-AAGCCTTTT-T----CTG-AATACTATTATCATTA
gi|11 : AGTGCCTTAGAATTACACTCTCCCAT-C----ACCCGAGTGAGT----G--G---GTT---T--TTTTTTTT--CGATCGGGG-AGAGTTGATCA-CCCTA-CCTG-CTCA-CCGTTC-GGG-AAGCGTTTT-T----CTG-AATACTATTATCATTA
gi|12 : CATCAAGGATTGAAATCAAACCCAGAAACAAATAAACGA-ATAGTAAAATA-----CAGGA--------------------AACTGTTCAAGGTTT--GGCTTT-TCATTTATAACACTATCATGGTGA-TTTCCAGCT
gi|13 : AGTGCTCTAGAATTATGC-CTCCTGTCC----ACCCGAG---GT----G--A---G-----T--GTTTTTTT--C-ATC--GG-AGAG-TGATCACCCCTA-CCTG--TCATCCGTTCGGGGAAAGCG-TTT-T----CTGAA
gi|14 : TGCTCTAGAATTACACTCTCCCGT-C----ACCCGGG---GT----G--AGTGG-----T--TTTTTTTT--CGATC-GGG-AGAGT
gi|15 : GGGTGAGTGAATTTTTACCTTTA-ACTCAATCGACATCTGTTGATGAGTGAATTTTTCTT--AAAAATCCTggtttttagctcac
gi|16 : TGCC-GCT-------TACTCGTGGTTGAGTGAAAAATC-TT--TAAAATCCTagagca
gi|17 : TGCTCTAGAATTATGCTCTCCTGT-C----ACCCGAT---TT----G--A---G-----T--Tataacactggctgtaattgaa
gi|18 : catAGTGCTCTAGAATTATGCTCTCCTGT-C----ACCCGAgggagt
gi|2 : GTGCTCTAGAATTACACTCTCC-GT-CTGACACCCGAG---GTCAAGGTCA---G-----T--GTTTTTTT--CTATC-AGG-AGAGTTGATCACCCCCAATCTT-TT------TT-----------TTTT-T----CTGAAATATTATTATCATT--------TAT-ACATAAATTAT--GGTAA------------------------TTGTGTCAAATATCTAAATAGAATTTCTCAAAGTCATGCA-ACTTA-TATT------TTAAGCATTTCGATCGTGAAC--T-CACTGAACTGTGTCAATCGTGGCCACCAAGAACGAAAATCAAACCCGGAAACAAATAAACAAGATAGTAAAATAAAAACCGGAGTGGAAA-------TATCGGGAACTTGTCAAGGTTT--AGTTTTATCATTTGCAACACT---GTGGC-AATTTCTGGTTGTTT-GTAT---AAATT-GTGTTTGGAT------GAGAAATGAA-AAGAGGTGGGTGAGTGAATTTTTATCTACC-ACC-------CACCCATGGGTGAGTGCAAAATT-TT--AAAAATCCT
gi|3 : TTTTT--CGATC-GGG-AGAGTTGATCATGCTTA-CTTG-CTCACCCGTTC-GGGAAAGCGTTTT-T----CTGAAATATTAT---CTTTGCAAAAAAGATTACATAACTTAT--GGTAAAAGT-GAT----C----AGGT-TA---------ATATGCAAAAAGAATTTCAAAAAGTCATGCA-ACTTA-T--TAA-ATTTTCAACACTGCAATCATGAAT--T-------------------GTGGCCATCAAGAACGAAAATCAAACCAGGAAATAGATAAACGA-ATAGTAAAATAAAAACTGGAACGGAAACAGAAAATACCACGAACTGGTCAAGGTTT--AGTTTT-TCGTTTGCAACACT---ACGGT-ACTTTCTGGTTG-TTGGTA-TTTGTACTTATGTTTGGATTTGGGTGAGTAATGAC-AAGTGGTGGGTGAGTGAATTTTTACCTGTC-ACT-------CAACCGTGGGTGAGTGAAAATGT-TC--AAAAATCCTat
gi|4 : tgACATAAATTA-ATGGTAAAAGT-GAT----C----AGGTCTATTGTGTCAAATATGCAAAAAGAATTTCAAAAAGTAGTGCA-ACT----ATTATTATTT--AACACTACGATCGTGAAC--G-TG----------TCCATCGTGGCCATCAAGAATGAAGATCAAATCCAGAAGCAA-TAAACGACATAGTAAAATAAAA-CCGGGACGGAAACAGAAAATCACGCAAACTGGTCAAGGTTTCTAGTTTT-CCGTTTGCAAC--------------TTTCTGGTTGTTTTGTATTTTGTATTCATGTTTGG-TTTGGGTGAGTAATGACTAAGTGGTGGGTGAGTGAA-TTATACCTGCT-ACT-------CACAGCTGGGTGAGTGAAAATTT-TA--AAAAATC
gi|5 : atACATAAATTAT--GGTAAAAGT-GAT----C----AGGT-TATTGTGTCAAATATGCAAAAAGAATTTCAAAAAGTAGTGCA-ACTTA-T--TAT-ATATTTAACACTACGATCGTGAACCGT-G-----------TCAATCGTGGCCATCAAGAATGAAGATCAAATCCAGAAGCAA-TAAACGA-ATAGTAAAATAAAAACCGGGACGGAAACAGAAAATACCGCAAACTGGTCAAGGTTT--AGTTTT-CCGTTTGCAAC--------------TTTCTGGTTGTTT-GTATTT-GTATTCATGTTTGGATTTGGGTGAGTAATGAC-AAGTGGTGGGTGAGTGAATTAATACCTGCC-ACT-------CACCAGTGGGTGAGTGAAAATTT-TA--AAAAA
gi|6 : aatAATTA-ATGGTAAAAGT-GAT----C----AGTC-TATTGTGTCAAATATGC-AAAAGA-TTTCAAAA--TAGTGTATACTTA-TATTAT-----TTAA-ACT-CGATCGTGAACG-TGT-----------TCAATCGTGGCCATCAAGAA-GAAGATCAAATC-AGAAGCAA-TAAACGA-ATAGTAAAATAAAAACCGGGACGGAAACAGAT--TAACGCAAACTGGTCAAGTTGT--A-TTTT-CCGTTTGCAAC--------------TTTCTGGTTGTTTTGTATTTTGTAT-CATGTT-GGATTTGGGTGAGTAATGAC-AAGTGGTGGGTGAGTGAA-TTATACCTGCCAACT-------CA
gi|7 : AGTGCTCTAGAATTACGCTCTCCCGT-C----ACCCGAG---GT----G--A---G-----T--AGTTTTAT--CGATC-TGG-AGAGTTGATCACCCCTA-CCGG-CTCACCCGTTC-GGGAAAGCGTTTT-T----CTGAAA---TATTATCGTTACAAAAACGACTACAGAAGT--TATGGTAAAAGT-GAT----C----AGGT-TATTGTGTCAAATATGCAAGAAGAATTTCAAAAAGTAATGCA-ACT---TATTAT-ATTTTCAACACTGC
gi|8 : GTGCTTAAAAATTACACTC--CCGT-C----ACCTGAG---GT----G--A---GAGGTGT--TTTTTTTT--CTATC-AGG-AGAGTTGAT--CCCCTA--CTG-CTCA-CCGTTT-GGGAAAGTGTTTTGT----CTGGAATATTAT-----TTAC------TATTACATAAAAT-TATGGTAAAAGT-GATCTAAC----AGGT-TA-TGTGTCAAATATGTGAAAAGAA---CAAAAAGTCATGTA-ACT---TATTAT-A
gi|9 : AGTGCTCTAGAATTACACTCTACCAT-C----ACCCGAG---GT----G--A---G-----GGGTTTTTTTT--CTGTC-GGG-AGAGTTGATCACCCTGA-CCTG-CTCACTCGTTC-GGGAAAGTGTTTT-TTTTTCTGAAATATTATTAACATTACG------------TAAATT-T-TGCTAAAAATTGAT----CTGACAGGT-TAT-GTATCAAATATGTGAAAAaatttaaaaat
Alignments
lowQualScore : 111 11111 444444 111 111111111 111 6666666666666666 1 66666666666666 1111111
lowQualScore : 3 7777 444 8888 55 777 55555 55 55 2 44 4 0 4 4 5 4 4 4 9999 3 0 33 2 222222 999 4 111111111 4 1 6 2 5 444 3 55 1 1 5 1111111111111111 6 0 5 1 0 777 3 0 77 5 11111111111111 6 6 7 3 3 6 5 1 5 6666666 5 888
lowQualScore : . .... ... .... .. ... ..... .. .. . .. . . . . . . . . .... . . .. . ...... ... . ......... . . . . . ... . .. . . . ................ . . . . . ... . . .. . .............. . . . . . . . . . ....... . ...
lowQualScore : 6 7777 000 5555 55 000 55555 55 55 5 77 0 1 4 4 7 4 6 4 4444 6 8 22 1 888888 222 4 777777777 4 9 2 5 0 444 2 11 6 7 3 5555555555555555 3 7 0 4 7 777 0 4 99 7 77777777777777 7 7 3 2 7 7 0 0 0 2222222 7 444
consensus : AGTGCTCTAGAATTACGCTCTCCCGT-C----ACCCGAG---GT----G--A---G-----T--TTTTTTTT--CGATC-GGG-AGAGTTGATCACCCCTA-CCTG-CTCACCCGTTC-GGGAAAGCGTTTT-T----CTGAAATATTATTATCATTACAAAAA-GATTACATAAATTATATGGTAAAAGT-GAT----C----AGGT-TATTGTGTCAAATATGCGAAAAGAATTTCAAAAAGTCGTGCA-ACTTA-TATTAT-ATTTTCAACACTGCGATCGTGAAC--T-T-----------TCAATCGTGGCCATCAAGAACGAAGATCAAACCCGGAAGCAAATAAACGA-ATAGTAAAATAAAAACCGGGACGGAAACAGAAAATACCGCGAACTGGTCAAGGTT--TAGTTTT-CCGTTTGCAACACT---ACGGT-A-TTTCTGGTTG-TTT-GTATTTTGTATTCATGTTTGGATTTGGGTGAGTAATGAC-AAGTGGTGGGTGAGTGAATTTNTACCTGCC-ACT-------CACCCGTGGGTGAGTGAAAATTT-TT--AAAAATCCT
Reference ( family-7764 ) : AGTGCTCTAGAATTACGCTCTCCCGT-C----ACCCGAG---GT----G--A---G-----T--TTTTTTTT--CGATC-GGG-AGAGTTGATCACCCCTA-CCTG-CTCACCCGTTC-GGGAAAGCGTTTT-T----CTGAAATATTATTATCATTACAAAAA-GATTACATAAATTATATGGTAAAAGT-GAT----C----AGGT-TATTGTGTCAAATATGCGAAAAGAATTTCAAAAAGTCGTGCA-ACTTA-TATTAT-ATTTTCAACACTGCGATCGTGAAC--T-T-----------TCAATCGTGGCCATCAAGAACGAAGATCAAACCCGGAAGCAAATAAACGA-ATAGTAAAATAAAAACCGGGACGGAAACAGAAAATACCGCGAACTGGTCAAGGTT--TAGTTTT-CCGTTTGCAACACT---ACGGT-A-TTTCTGGTTG-TTT-GTATTTTGTATTCATGTTTGGATTTGGGTGAGTAATGAC-AAGTGGTGGGTGAGTGAATTTNTACCTGCC-ACT-------CACCCGTGGGTGAGTGAAAATTT-TT--AAAAATCCT
gi|1 : AGTGCTCTAGAATTACGCTATCCCGT-C----ACTCAAG---GT----G--A---G-----T--TTTTTTTT--CGATC-GGG-AGAGTTGATCACCCCTA-CCTG-CTCACCCGTTC-AGGAAAGCATTTT-T----CTGAAATAGTATTATCATTACAAAAAAGATAACATAAATTATATGGTAAAAGT-GAT----C----AGAT-TATTGTGTCAAATATGCAAAAAGAATTTCCAAAAGTCATGCA-ACTTAATATTAT-ATTTTCAACACTGCGATCGTGAAC--T-T-----------TCAATTGTGGCCATCAAGAATGAAAATCAAACCCGGAAACAAATAAATGT-ATAGTAAAATAAAAACCGGGACGGAAACAGAAAATACTGCGATCTGGTCAAGGTT--TAGTTTT-TCGTTTGCAACACT---ACGGT-ACTTTCTGGTTG-TTG-GTA-TTTGTATTTATGTTTGGATTTGGGTGAGTAATGAC-AAGTGGTGGGTGAGTGAATTTTTACCTGCC-ACT-------CACCCATGGGTGAGTGAAATTTT-TTAAAAAAATCCT
gi|10 : AGTGCTCTAGAATTACACTCTCCCAT-C----ACCCGAGTGAGT----G--G---G-----T--TTTTTTTTTTCGATC-GGGGAGAGTTGATCACCCCTA-CCTGTCTCA-CCGTTC-GGG-AAGCCTTTT-T----CTG-AATACTATTATCATTA
gi|11 : AGTGCCTTAGAATTACACTCTCCCAT-C----ACCCGAGTGAGT----G--G---GTT---T--TTTTTTTT--CGATCGGGG-AGAGTTGATCA-CCCTA-CCTG-CTCA-CCGTTC-GGG-AAGCGTTTT-T----CTG-AATACTATTATCATTA
gi|12 : CATCAAGGATTGAAATCAAACCCAGAAACAAATAAACGA-ATAGTAAAATA-----CAGGA--------------------AACTGTTCAAGGTT--TGGCTTT-TCATTTATAACACTATCATGGTGA-TTTCCAGCT
gi|13 : AGTGCTCTAGAATTATGC-CTCCTGTCC----ACCCGAG---GT----G--A---G-----T--GTTTTTTT--C-ATC--GG-AGAG-TGATCACCCCTA-CCTG--TCATCCGTTCGGGGAAAGCG-TTT-T----CTGAA
gi|14 : TGCTCTAGAATTACACTCTCCCGT-C----ACCCGGG---GT----G--AGTGG-----T--TTTTTTTT--CGATC-GGG-AGAGT
gi|15 : GGGTGAGTGAATTTTTACCTTTA-ACTCAATCGACATCTGTTGATGAGTGAATTTTTCTT--AAAAATCCTggtttttagctcac
gi|16 : TGCC-GCT-------TACTCGTGGTTGAGTGAAAAATC-TT--TAAAATCCTagagca
gi|17 : TGCTCTAGAATTATGCTCTCCTGT-C----ACCCGAT---TT----G--A---G-----T--Tataacactggctgtaattgaa
gi|18 : catAGTGCTCTAGAATTATGCTCTCCTGT-C----ACCCGAgggagt
gi|2 : GTGCTCTAGAATTACACTCTCC-GT-CTGACACCCGAG---GTCAAGGTCA---G-----T--GTTTTTTT--CTATC-AGG-AGAGTTGATCACCCCCAATCTT-TT------TT-----------TTTT-T----CTGAAATATTATTATCATT-TA--------TACATAAATTAT--GGTAA------------------------TTGTGTCAAATATCTAAATAGAATTTCTCAAAGTCATGCA-ACTTA-TATT------TTAAGCATTTCGATCGTGAAC--T-CACTGAACTGTGTCAATCGTGGCCACCAAGAACGAAAATCAAACCCGGAAACAAATAAACAAGATAGTAAAATAAAAACCGGAGTGGAAA-------TATCGGGAACTTGTCAAGGTT--TAGTTTTATCATTTGCAACACT---GTGGC-AATTTCTGGTTG-TTT-GTAT---AAATT-GTGTTTGGAT------GAGAAATGAA-AAGAGGTGGGTGAGTGAATTTTTATCTACC-ACC-------CACCCATGGGTGAGTGCAAAATT-TT--AAAAATCCT
gi|3 : TTTTT--CGATC-GGG-AGAGTTGATCATGCTTA-CTTG-CTCACCCGTTC-GGGAAAGCGTTTT-T----CTGAAATATTAT---CTTTGCAAAAAAGATTACATAACTTAT--GGTAAAAGT-GAT----C----AGGT-TA---------ATATGCAAAAAGAATTTCAAAAAGTCATGCA-ACTTA-T--TAA-ATTTTCAACACTGCAATCATGAAT--T-------------------GTGGCCATCAAGAACGAAAATCAAACCAGGAAATAGATAAACGA-ATAGTAAAATAAAAACTGGAACGGAAACAGAAAATACCACGAACTGGTCAAGGTT--TAGTTTT-TCGTTTGCAACACT---ACGGT-ACTTTCTGGTTG-TTG-GTA-TTTGTACTTATGTTTGGATTTGGGTGAGTAATGAC-AAGTGGTGGGTGAGTGAATTTTTACCTGTC-ACT-------CAACCGTGGGTGAGTGAAAATGT-TC--AAAAATCCTat
gi|4 : tgTACATAAATTA-ATGGTAAAAGT-GAT----C----AGGTCTATTGTGTCAAATATGCAAAAAGAATTTCAAAAAGTAGTGCA-ACT----ATTATTATTT--AACACTACGATCGTGAAC--G-TG----------TCCATCGTGGCCATCAAGAATGAAGATCAAATCCAGAAGC-AATAAACGACATAGTAAAAT-AAAACCGGGACGGAAACAGAAAATCACGCAAACTGGTCAAGGTTTCTAGTTTT-CCGTTTGCAAC--------------TTTCTGGTTGTTTT-GTATTTTGTATTCATGTTTGG-TTTGGGTGAGTAATGACTAAGTGGTGGGTGAGTGAA-TTATACCTGCT-ACT-------CACAGCTGGGTGAGTGAAAATTT-TA--AAAAATC
gi|5 : aTACATAAATTAT--GGTAAAAGT-GAT----C----AGGT-TATTGTGTCAAATATGCAAAAAGAATTTCAAAAAGTAGTGCA-ACTTA-T--TAT-ATATTTAACACTACGATCGTGAACCGT-G-----------TCAATCGTGGCCATCAAGAATGAAGATCAAATCCAGAAGCAA-TAAACGA-ATAGTAAAATAAAAACCGGGACGGAAACAGAAAATACCGCAAACTGGTCAAGGTT--TAGTTTT-CCGTTTGCAAC--------------TTTCTGGTTG-TTT-GTATTT-GTATTCATGTTTGGATTTGGGTGAGTAATGAC-AAGTGGTGGGTGAGTGAATTAATACCTGCC-ACT-------CACCAGTGGGTGAGTGAAAATTT-TA--AAAAA
gi|6 : aaAATTA-ATGGTAAAAGT-GAT----C----AGTC-TATTGTGTCAAATATGC-AAAAGA-TTTCAAAA--TAGTGTATACTTA-TATTAT-----TTAA-ACT-CGATCGTGAACG-TGT-----------TCAATCGTGGCCATCAAGAA-GAAGATCAAATC-AGAAGCAA-TAAACGA-ATAGTAAAATAAAAACCGGGACGGAAACAGAT--TAACGCAAACTGGTCAAGTTG--TA-TTTT-CCGTTTGCAAC--------------TTTCTGGTTG-TTTTGTATTTTGTAT-CATGTT-GGATTTGGGTGAGTAATGAC-AAGTGGTGGGTGAGTGAA-TTATACCTGCCAACT-------CA
gi|7 : AGTGCTCTAGAATTACGCTCTCCCGT-C----ACCCGAG---GT----G--A---G-----T--AGTTTTAT--CGATC-TGG-AGAGTTGATCACCCCTA-CCGG-CTCACCCGTTC-GGGAAAGCGTTTT-T----CTGAAA---TATTATCGTTACAAAAACGACTACAGAAGT--TATGGTAAAAGT-GAT----C----AGGT-TATTGTGTCAAATATGCAAGAAGAATTTCAAAAAGTAATGCA-ACT---TATTAT-ATTTTCAACACTGC
gi|8 : GTGCTTAAAAATTACACTC--CCGT-C----ACCTGAG---GT----G--A---GAGGTGT--TTTTTTTT--CTATC-AGG-AGAGTTGATC--CCCTA-C-TG-CTCACC-GTTT-GGGAAAGTGTTTTGT----CTGGAATATTATT-----TAC------TATTACATAAAAT-TATGGTAAAAGT-GATCTAAC----AGGT-TA-TGTGTCAAATATGTGAAAAGAA---CAAAAAGTCATGTA-ACT---TATTAT-A
gi|9 : AGTGCTCTAGAATTACACTCTACCAT-C----ACCCGAG---GT----G--A---G-----GGGTTTTTTTT--CTGTC-GGG-AGAGTTGATCACCCTGA-CCTG-CTCACTCGTTC-GGGAAAGTGTTTT-TTTTTCTGAAATATTATTA-----ACA-------TTACGTAAATT-T-TGCTAAAAATTGAT----CTGACAGGT-TAT-GTATCAAATATGTGAAAAaatttaaaaat
Alignments
lowQualScore : 111 11111 444444 111 111111111 111 6666666666666666 1 66666666666666 1111111
lowQualScore : 3 7777 444 8888 55 777 55555 55 55 2 44 4 0 4 4 5 4 4 4 9999 3 0 33 2 222222 999 4 111111111 4 1 6 2 5 444 3 55 1 1 5 1111111111111111 6 0 5 1 0 777 3 0 77 5 11111111111111 6 6 7 3 3 6 5 1 5 6666666 5 888
lowQualScore : . .... ... .... .. ... ..... .. .. . .. . . . . . . . . .... . . .. . ...... ... . ......... . . . . . ... . .. . . . ................ . . . . . ... . . .. . .............. . . . . . . . . . ....... . ...
lowQualScore : 6 7777 000 5555 55 000 55555 55 55 5 77 0 1 4 4 7 4 6 4 4444 6 8 22 1 888888 222 4 777777777 4 9 2 5 0 444 2 11 6 7 3 5555555555555555 3 7 0 4 7 777 0 4 99 7 77777777777777 7 7 3 2 7 7 0 0 0 2222222 7 444
consensus : AGTGCTCTAGAATTACGCTCTCCCGT-C----ACCCGAG---GT----G--A---G-----T--TTTTTTTT--CGATC-GGG-AGAGTTGATCACCCCTA-CCTG-CTCACCCGTTC-GGGAAAGCGTTTT-T----CTGAAATATTATTATCATTACAAAAA-GATTACATAAATTATATGGTAAAAGT-GAT----C----AGGT-TATTGTGTCAAATATGCGAAAAGAATTTCAAAAAGTCGTGCA-ACTTA-TATTAT-ATTTTCAACACTGCGATCGTGAAC--T-T-----------TCAATCGTGGCCATCAAGAACGAAGATCAAACCCGGAAGCAAATAAACGA-ATAGTAAAATAAAAACCGGGACGGAAACAGAAAATACCGCGAACTGGTCAAGGTT--TAGTTTT-CCGTTTGCAACACT---ACGGT-A-TTTCTGGTTG-TTT-GTATTTTGTATTCATGTTTGGATTTGGGTGAGTAATGAC-AAGTGGTGGGTGAGTGAATTTNTACCTGCC-ACT-------CACCCGTGGGTGAGTGAAAATTT-TT--AAAAATCCT
Reference ( family-7764 ) : AGTGCTCTAGAATTACGCTCTCCCGT-C----ACCCGAG---GT----G--A---G-----T--TTTTTTTT--CGATC-GGG-AGAGTTGATCACCCCTA-CCTG-CTCACCCGTTC-GGGAAAGCGTTTT-T----CTGAAATATTATTATCATTACAAAAA-GATTACATAAATTATATGGTAAAAGT-GAT----C----AGGT-TATTGTGTCAAATATGCGAAAAGAATTTCAAAAAGTCGTGCA-ACTTA-TATTAT-ATTTTCAACACTGCGATCGTGAAC--T-T-----------TCAATCGTGGCCATCAAGAACGAAGATCAAACCCGGAAGCAAATAAACGA-ATAGTAAAATAAAAACCGGGACGGAAACAGAAAATACCGCGAACTGGTCAAGGTT--TAGTTTT-CCGTTTGCAACACT---ACGGT-A-TTTCTGGTTG-TTT-GTATTTTGTATTCATGTTTGGATTTGGGTGAGTAATGAC-AAGTGGTGGGTGAGTGAATTTNTACCTGCC-ACT-------CACCCGTGGGTGAGTGAAAATTT-TT--AAAAATCCT
gi|1 : AGTGCTCTAGAATTACGCTATCCCGT-C----ACTCAAG---GT----G--A---G-----T--TTTTTTTT--CGATC-GGG-AGAGTTGATCACCCCTA-CCTG-CTCACCCGTTC-AGGAAAGCATTTT-T----CTGAAATAGTATTATCATTACAAAAAAGATAACATAAATTATATGGTAAAAGT-GAT----C----AGAT-TATTGTGTCAAATATGCAAAAAGAATTTCCAAAAGTCATGCA-ACTTAATATTAT-ATTTTCAACACTGCGATCGTGAAC--T-T-----------TCAATTGTGGCCATCAAGAATGAAAATCAAACCCGGAAACAAATAAATGT-ATAGTAAAATAAAAACCGGGACGGAAACAGAAAATACTGCGATCTGGTCAAGGTT--TAGTTTT-TCGTTTGCAACACT---ACGGT-ACTTTCTGGTTG-TTG-GTA-TTTGTATTTATGTTTGGATTTGGGTGAGTAATGAC-AAGTGGTGGGTGAGTGAATTTTTACCTGCC-ACT-------CACCCATGGGTGAGTGAAATTTT-TTAAAAAAATCCT
gi|10 : AGTGCTCTAGAATTACACTCTCCCAT-C----ACCCGAGTGAGT----G--G---G-----T--TTTTTTTTTTCGATC-GGGGAGAGTTGATCACCCCTA-CCTGTCTCA-CCGTTC-GGG-AAGCCTTTT-T----CTG-AATACTATTATCATTA
gi|11 : AGTGCCTTAGAATTACACTCTCCCAT-C----ACCCGAGTGAGT----G--G---GTT---T--TTTTTTTT--CGATCGGGG-AGAGTTGATCA-CCCTA-CCTG-CTCA-CCGTTC-GGG-AAGCGTTTT-T----CTG-AATACTATTATCATTA
gi|12 : CATCAAGGATTGAAATCAAACCCAGAAACAAATAAACGA-ATAGTAAAATA-----CAGGA--------------------AACTGTTCAAGGTT--TGGCTTT-TCATTTATAACACTATCATGGTGA-TTTCCAGCT
gi|13 : AGTGCTCTAGAATTATGC-CTCCTGTCC----ACCCGAG---GT----G--A---G-----T--GTTTTTTT--C-ATC--GG-AGAG-TGATCACCCCTA-CCTG--TCATCCGTTCGGGGAAAGCG-TTT-T----CTGAA
gi|14 : TGCTCTAGAATTACACTCTCCCGT-C----ACCCGGG---GT----G--AGTGG-----T--TTTTTTTT--CGATC-GGG-AGAGT
gi|15 : GGGTGAGTGAATTTTTACCTTTA-ACTCAATCGACATCTGTTGATGAGTGAATTTTTCTT--AAAAATCCTggtttttagctcac
gi|16 : TGCC-GCT-------TACTCGTGGTTGAGTGAAAAATC-TT--TAAAATCCTagagca
gi|17 : TGCTCTAGAATTATGCTCTCCTGT-C----ACCCGAT---TT----G--A---G-----T--Tataacactggctgtaattgaa
gi|18 : catAGTGCTCTAGAATTATGCTCTCCTGT-C----ACCCGAgggagt
gi|2 : GTGCTCTAGAATTACACTCTCC-GT-CTGACACCCGAG---GTCAAGGTCA---G-----T--GTTTTTTT--CTATC-AGG-AGAGTTGATCACCCCCAATCTT-TT------TT-----------TTTT-T----CTGAAATATTATTATCATT-TA--------TACATAAATTAT--GGTAA------------------------TTGTGTCAAATATCTAAATAGAATTTCTCAAAGTCATGCA-ACTTA-TATT------TTAAGCATTTCGATCGTGAAC--T-CACTGAACTGTGTCAATCGTGGCCACCAAGAACGAAAATCAAACCCGGAAACAAATAAACAAGATAGTAAAATAAAAACCGGAGTGGAAA-------TATCGGGAACTTGTCAAGGTT--TAGTTTTATCATTTGCAACACT---GTGGC-AATTTCTGGTTG-TTT-GTAT---AAATT-GTGTTTGGAT------GAGAAATGAA-AAGAGGTGGGTGAGTGAATTTTTATCTACC-ACC-------CACCCATGGGTGAGTGCAAAATT-TT--AAAAATCCT
gi|3 : TTTTT--CGATC-GGG-AGAGTTGATCATGCTTA-CTTG-CTCACCCGTTC-GGGAAAGCGTTTT-T----CTGAAATATTAT---CTTTGCAAAAAAGATTACATAACTTAT--GGTAAAAGT-GAT----C----AGGT-TA---------ATATGCAAAAAGAATTTCAAAAAGTCATGCA-ACTTA-T--TAA-ATTTTCAACACTGCAATCATGAAT--T-------------------GTGGCCATCAAGAACGAAAATCAAACCAGGAAATAGATAAACGA-ATAGTAAAATAAAAACTGGAACGGAAACAGAAAATACCACGAACTGGTCAAGGTT--TAGTTTT-TCGTTTGCAACACT---ACGGT-ACTTTCTGGTTG-TTG-GTA-TTTGTACTTATGTTTGGATTTGGGTGAGTAATGAC-AAGTGGTGGGTGAGTGAATTTTTACCTGTC-ACT-------CAACCGTGGGTGAGTGAAAATGT-TC--AAAAATCCTat
gi|4 : tgTACATAAATTA-ATGGTAAAAGT-GAT----C----AGGTCTATTGTGTCAAATATGCAAAAAGAATTTCAAAAAGTAGTGCA-ACT----ATTATTATTT--AACACTACGATCGTGAAC--G-TG----------TCCATCGTGGCCATCAAGAATGAAGATCAAATCCAGAAGC-AATAAACGACATAGTAAAAT-AAAACCGGGACGGAAACAGAAAATCACGCAAACTGGTCAAGGTTTCTAGTTTT-CCGTTTGCAAC--------------TTTCTGGTTGTTTT-GTATTTTGTATTCATGTTTGG-TTTGGGTGAGTAATGACTAAGTGGTGGGTGAGTGAA-TTATACCTGCT-ACT-------CACAGCTGGGTGAGTGAAAATTT-TA--AAAAATC
gi|5 : aTACATAAATTAT--GGTAAAAGT-GAT----C----AGGT-TATTGTGTCAAATATGCAAAAAGAATTTCAAAAAGTAGTGCA-ACTTA-T--TAT-ATATTTAACACTACGATCGTGAACCGT-G-----------TCAATCGTGGCCATCAAGAATGAAGATCAAATCCAGAAGCAA-TAAACGA-ATAGTAAAATAAAAACCGGGACGGAAACAGAAAATACCGCAAACTGGTCAAGGTT--TAGTTTT-CCGTTTGCAAC--------------TTTCTGGTTG-TTT-GTATTT-GTATTCATGTTTGGATTTGGGTGAGTAATGAC-AAGTGGTGGGTGAGTGAATTAATACCTGCC-ACT-------CACCAGTGGGTGAGTGAAAATTT-TA--AAAAA
gi|6 : aaAATTA-ATGGTAAAAGT-GAT----C----AGTC-TATTGTGTCAAATATGC-AAAAGA-TTTCAAAA--TAGTGTATACTTA-TATTAT-----TTAA-ACT-CGATCGTGAACG-TGT-----------TCAATCGTGGCCATCAAGAA-GAAGATCAAATC-AGAAGCAA-TAAACGA-ATAGTAAAATAAAAACCGGGACGGAAACAGAT--TAACGCAAACTGGTCAAGTTG--TA-TTTT-CCGTTTGCAAC--------------TTTCTGGTTG-TTTTGTATTTTGTAT-CATGTT-GGATTTGGGTGAGTAATGAC-AAGTGGTGGGTGAGTGAA-TTATACCTGCCAACT-------CA
gi|7 : AGTGCTCTAGAATTACGCTCTCCCGT-C----ACCCGAG---GT----G--A---G-----T--AGTTTTAT--CGATC-TGG-AGAGTTGATCACCCCTA-CCGG-CTCACCCGTTC-GGGAAAGCGTTTT-T----CTGAAA---TATTATCGTTACAAAAACGACTACAGAAGT--TATGGTAAAAGT-GAT----C----AGGT-TATTGTGTCAAATATGCAAGAAGAATTTCAAAAAGTAATGCA-ACT---TATTAT-ATTTTCAACACTGC
gi|8 : GTGCTTAAAAATTACACTC--CCGT-C----ACCTGAG---GT----G--A---GAGGTGT--TTTTTTTT--CTATC-AGG-AGAGTTGATC--CCCTA-C-TG-CTCACC-GTTT-GGGAAAGTGTTTTGT----CTGGAATATTATT-----TAC------TATTACATAAAAT-TATGGTAAAAGT-GATCTAAC----AGGT-TA-TGTGTCAAATATGTGAAAAGAA---CAAAAAGTCATGTA-ACT---TATTAT-A
gi|9 : AGTGCTCTAGAATTACACTCTACCAT-C----ACCCGAG---GT----G--A---G-----GGGTTTTTTTT--CTGTC-GGG-AGAGTTGATCACCCTGA-CCTG-CTCACTCGTTC-GGGAAAGTGTTTT-TTTTTCTGAAATATTATTA-----ACA-------TTACGTAAATT-T-TGCTAAAAATTGAT----CTGACAGGT-TAT-GTATCAAATATGTGAAAAaatttaaaaat
blockSeqs : C TGAC TGA CAAG TC GTG AGGTG GG TT G GG G A T T G A G TTTT A AT A AAAAAG AT T CTAAC C T A C T TA A TA T A T TCACTGAACTGTG T A G AAA T TC A ACTATCATGGTGA T T T T T T T T A CAATCGA C T
blockSeqs : . . TGA . . . TT . . G G . . . C . A . . A AT A AAAACG AT . CTGAC . T A C . TA A A T C G CGTG C A C AAA C . . ACTGTGGCAA . . T T C . T T . . . T
blockSeqs : . . . . . . . . . G G . . . C . A . . A AT A T AA . C . T A A . TA A A A T A GTGT C A . AAA A . . ACTACGGTAC . . T T C . T T . . . T
blockSeqs : . . . . . . . . . T A . . . C . A . . A AT T . AT . C . T A A . TA A A T T A GTG T A . T C . . . . . T . C . T A . . . C
blockSeqs : . . . . . . . . . G G . . . C . A . . G A G . AA . C . T A A . . A A . C G T T . . . A . . . . . . . . . . A . . . A
blockSeqs : . . . . . . . . . G T . . . . . . . . A . . TA . C . T G A . . . . . . . . . . . . . . . . A . . . A
blockSeqs : . . . . . . . . . T A . . . . . . . . . . . TA . C . . G C . . . . . .
blockSeqs : . . . . . . . . . T G . . . . . . . . . T . . . . .
blockSeqs : . . . . . . . . . . . .
blockSeqs : . .
blockSeqCons : AN* TA* CGTG************ ACTAGGT******* N**
originalCons : AGTGCTCTAGAATTACGCTCTCCCGT-C----ACCCGAG---GT----G--A---G-----T--TTTTTTTT--CGATC-GGG-AGAGTTGATCACCCCTA-CCTG-CTCACCCGTTC-GGGAAAGCGTTTT-T----CTGAAATATTATTATCATTACAAAAA-GATTACATAAATTATATGGTAAAAGT-GAT----C----AGGT-TATTGTGTCAAATATGCGAAAAGAATTTCAAAAAGTCGTGCA-ACTTA-TATTAT-ATTTTCAACACTGCGATCGTGAAC--T-T-----------TCAATCGTGGCCATCAAGAACGAAGATCAAACCCGGAAGCAAATAAACGA-ATAGTAAAATAAAAACCGGGACGGAAACAGAAAATACCGCGAACTGGTCAAGGTT--TAGTTTT-CCGTTTGCAACACT---ACGGT-A-TTTCTGGTTG-TTT-GTATTTTGTATTCATGTTTGGATTTGGGTGAGTAATGAC-AAGTGGTGGGTGAGTGAATTTNTACCTGCC-ACT-------CACCCGTGGGTGAGTGAAAATTT-TT--AAAAATCCT
finalCons : AGTGCTCTAGAATTACGCTCTCCCGT-C----ACCCGAG---GT----G--A---G-----T--TTTTTTTT--CGATC-GGG-AGAGTTGATCACCCCTA-CCTG-CTCACCCGTTC-GGGAAAGCGTTTT-T----CTGAAATATTATTATCATTACAAAAA-GATTACATAAATTAN-TGGTAAAAGT-GAT----C----AGGT-TATTGTGTCAAATATGCGAAAAGAATTTCAAAAAGTCGTGCA-ACTTA-TATTAT-ATTTTCAACACTGCGATCGTGAACCGTG------------TCAATCGTGGCCATCAAGAACGAAGATCAAACCCGGAAGCAAATAAACGA-ATAGTAAAATAAAAACCGGGACGGAAACAGAAAATACCGCGAACTGGTCAAGGTT--TAGTTTT-CCGTTTGCAACACTAGGT-------TTTCTGGTTG-TTT-GTATTTTGTATTCATGTTTGGATTTGGGTGAGTAATGAC-AAGTGGTGGGTGAGTGAATTTNTACCTGCC-ACT-------CACCCGTGGGTGAGTGAAAATTT-TN--AAAAATCCT
Alignments
lowQualScore : 111 11111 44444444 22 1111 22222 222222222 2 1 7777777777 1 1111111 111
lowQualScore : 3 7777 444 8888 55 777 55555 55 55 2 44 4 0 4 4 5 4 4 9999 4 3 0 33 2 66666666 4 77 4 8888 4 7 6 2 5 33333 5 1 5 666666666 1 6 6 0 5 1 1 1 3 0 77 5 2222222222 6 6 5 3 6 5 1 5 6666666 5 5 444
lowQualScore : . .... ... .... .. ... ..... .. .. . .. . . . . . . . .... . . . .. . ........ . .. . .... . . . . . ..... . . . ......... . . . . . . . . . . .. . .......... . . . . . . . . ....... . . ...
lowQualScore : 6 7777 000 5555 55 000 55555 55 55 5 77 0 1 4 4 7 4 6 4444 4 6 8 22 1 00000000 4 11 4 9999 4 3 2 5 0 66666 0 7 3 777777777 8 7 3 7 0 4 4 4 0 4 99 7 6666666666 7 7 5 7 7 0 0 0 2222222 7 7 444
consensus : AGTGCTCTAGAATTACGCTCTCCCGT-C----ACCCGAG---GT----G--A---G-----T--TTTTTTTT--CGATC-GGG-AGAGTTGATCACCCCTA-CCTG-CTCACCCGTTC-GGGAAAGCG----TTTT-TCTGAAATATTATTATCATTAC-AAAAA-GATTACATAAA-TTA--TGGTAAAAG-TGAT----CAGGT-TATTGTGTCAAATATGCGAAAAGAATTTCAAAAAGTCGTGCA-ACTT-ATATTAT-ATTTTCAACACTGCGATCG---------TGAAC-GTGT-CAATCGTGGCCATCAAGAACGAAGATCAAACCCGGAAGCAAATAAACGA-ATAGTAAAATAAAAACCGGGACGGAAACAGAAAATACCGCGAACTGGTCAAGGTT--TAGTTTT-CCGTTTGCAACACTA-GGTA-TTTCTGGTTG-TTT-GTATTTTGTATTCATGTTTGGATTTGGGTGAGTAATGAC-AAGTGGTGGGTGAGTGAATTTNTACCTGCC-ACT-------CACCCGTGGGTGAGTG-AAAATTT-T--NAAAAATCCT
Reference ( family-7764 ) : AGTGCTCTAGAATTACGCTCTCCCGT-C----ACCCGAG---GT----G--A---G-----T--TTTTTTTT--CGATC-GGG-AGAGTTGATCACCCCTA-CCTG-CTCACCCGTTC-GGGAAAGCG----TTTT-TCTGAAATATTATTATCATTAC-AAAAA-GATTACATAAA-TTA-NTGGTAAAAG-TGAT----CAGGT-TATTGTGTCAAATATGCGAAAAGAATTTCAAAAAGTCGTGCA-ACTT-ATATTAT-ATTTTCAACACTGCGATCG---------TGAACCGTGT-CAATCGTGGCCATCAAGAACGAAGATCAAACCCGGAAGCAAATAAACGA-ATAGTAAAATAAAAACCGGGACGGAAACAGAAAATACCGCGAACTGGTCAAGGTT--TAGTTTT-CCGTTTGCAACACTA-GGT--TTTCTGGTTG-TTT-GTATTTTGTATTCATGTTTGGATTTGGGTGAGTAATGAC-AAGTGGTGGGTGAGTGAATTTNTACCTGCC-ACT-------CACCCGTGGGTGAGTG-AAAATTT-T--NAAAAATCCT
gi|1 : AGTGCTCTAGAATTACGCTATCCCGT-C----ACTCAAG---GT----G--A---G-----T--TTTTTTTT--CGATC-GGG-AGAGTTGATCACCCCTA-CCTG-CTCACCCGTTC-AGGAAAGCA----TTTT-TCTGAAATAGTATTATCATTACAAAAAA-GATAACATAAA-TTATATGGTAAAAG-TGAT----CAGAT-TATTGTGTCAAATATGCAAAAAGAATTTCCAAAAGTCATGCA-ACTTAATATTAT-ATTTTCAACACTGCGATCG---------TGAAC--TTT-CAATTGTGGCCATCAAGAATGAAAATCAAACCCGGAAACAAATAAATGT-ATAGTAAAATAAAAACCGGGACGGAAACAGAAAATACTGCGATCTGGTCAAGGTT--TAGTTTT-TCGTTTGCAACACTACGGTACTTTCTGGTTG-TTG-GTA-TTTGTATTTATGTTTGGATTTGGGTGAGTAATGAC-AAGTGGTGGGTGAGTGAATTTTTACCTGCC-ACT-------CACCCATGGGTGAGTG-AAATTTT-TTAAAAAAATCCT
gi|10 : AGTGCTCTAGAATTACACTCTCCCAT-C----ACCCGAGTGAGT----G--G---G-----T--TTTTTTTTTTCGATC-GGGGAGAGTTGATCACCCCTA-CCTGTCTCA-CCGTTC-GGG-AAGCC----TTTT-TCTG-AATACTATTATCATTA
gi|11 : AGTGCCTTAGAATTACACTCTCCCAT-C----ACCCGAGTGAGT----G--G---GTT---T--TTTTTTTT--CGATCGGGG-AGAGTTGATCA-CCCTA-CCTG-CTCA-CCGTTC-GGG-AAGCG----TTTT-TCTG-AATACTATTATCATTA
gi|12 : CATCAAGGATTGAAATCAAACCCAGAAACAAATAAACGA-ATAGTAAAATA-----CAGGA--------------------AACTGTTCAAGGTT--TGGCTTT-TCATTTATAACACTA-
gi|13 : AGTGCTCTAGAATTATGC-CTCCTGTCC----ACCCGAG---GT----G--A---G-----T--GTTTTTTT--C-ATC--GG-AGAG-TGATCACCCCTA-CCTG--TCATCCGTTCGGGGAAAGCG-----TTT-TCTGAAtcatggtgatttccagct
gi|14 : TGCTCTAGAATTACACTCTCCCGT-C----ACCCGGG---GT----G--AGTGG-----T--TTTTTTTT--CGATC-GGG-AGAGT
gi|15 : GGGTGAGTGAATTTTTACCTTTA-ACTCAATCGACATCTGTTGATGAGTG-AATTTTTCT--TAAAAATCCTggtttttagctcac
gi|16 : TGCC-GCT-------TACTCGTGGTTGAGTG-AAAAATC-T--TTAAAATCCTagagca
gi|17 : TGCTCTAGAATTATGCTCTCCTGT-C----ACCCGAT---TT----G--A---G-----T--Tataacactggctgtaattgaa
gi|18 : catAGTGCTCTAGAATTATGCTCTCCTGT-C----ACCCGAgggagt
gi|2 : GTGCTCTAGAATTACACTCTCC-GT-CTGACACCCGAG---GTCAAGGTCA---G-----T--GTTTTTTT--CTATC-AGG-AGAGTTGATCACCCCCAATCTT-TT------TT---------------TTTT-TCTGAAATATTATTATCATT-T-A--------TACATAAA-TTA--TGGTA--------------------ATTGTGTCAAATATCTAAATAGAATTTCTCAAAGTCATGCA-AC------TTAT-ATTTTAAGCATTTCGATCGTGAACTCACTGAACTGTGT-CAATCGTGGCCACCAAGAACGAAAATCAAACCCGGAAACAAATAAACAAGATAGTAAAATAAAAACCGGAGTGG-------AAATATCGGGAACTTGTCAAGGTT--TAGTTTTATCATTTGCAACACTGTGGCAATTTCTGGTTG-TTT-GTA---TAAATT-GTGTTTGGA------TGAGAAATGAA-AAGAGGTGGGTGAGTGAATTTTTATCTACC-ACC-------CACCCATGGGTGAGTGCAAAATTT-T---AAAAATCCT
gi|3 : TTTTT--CGATC-GGG-AGAGTTGATCATGCTTA-CTTG-CTCACCCGTTC-GGGAAAGCG----TTTT-TCTGAAATATTAT---CTTTGC-AAAAAAGATTACATAAC-TTA--TGGTAAAAG-TGAT----CAGGT-TA---------ATATGCAAAAAGAATTTCAAAAAGTCATGCA-ACTT-AT--TAA-ATTTTCAACACTGCAATCA---------TGAA----------TTGTGGCCATCAAGAACGAAAATCAAACCAGGAAATAGATAAACGA-ATAGTAAAATAAAAACTGGAACGGAAACAGAAAATACCACGAACTGGTCAAGGTT--TAGTTTT-TCGTTTGCAACACTACGGTACTTTCTGGTTG-TTG-GTA-TTTGTACTTATGTTTGGATTTGGGTGAGTAATGAC-AAGTGGTGGGTGAGTGAATTTTTACCTGTC-ACT-------CAACCGTGGGTGAGTG-AAAATGT-T--CAAAAATCCTat
gi|4 : tgTACATAAA-TTA-ATGGTAAAAG-TGAT----CAGGTCTATTGTGTCAAATATGCAAAAAGAATTTCAAAAAGTAGTGCA-ACT----ATTATTATTT--AACACTACGATCG---------TGAAC-GTGT-CCATCGTGGCCATCAAGAATGAAGATCAAATCCAGAAGC-AATAAACGACATAGTAAAAT-AAAACCGGGACGGAAACAGAAAATCACGCAAACTGGTCAAGGTTTCTAGTTTT-CCGTTTGCAAC----------TTTCTGGTTGTTTT-GTATTTTGTATTCATGTTTGG-TTTGGGTGAGTAATGACTAAGTGGTGGGTGAGTGAA-TTATACCTGCT-ACT-------CACAGCTGGGTGAGTG-AAAATTT-T--AAAAAATC
gi|5 : aTACATAAA-TTA--TGGTAAAAG-TGAT----CAGGT-TATTGTGTCAAATATGCAAAAAGAATTTCAAAAAGTAGTGCA-ACTT-AT--TAT-ATATTTAACACTACGATCG---------TGAACCGTGT-CAATCGTGGCCATCAAGAATGAAGATCAAATCCAGAAGCAA-TAAACGA-ATAGTAAAATAAAAACCGGGACGGAAACAGAAAATACCGCAAACTGGTCAAGGTT--TAGTTTT-CCGTTTGCAAC----------TTTCTGGTTG-TTT-GTATTT-GTATTCATGTTTGGATTTGGGTGAGTAATGAC-AAGTGGTGGGTGAGTGAATTAATACCTGCC-ACT-------CACCAGTGGGTGAGTG-AAAATTT-T--AAAAAA
gi|6 : aaAA-TTA-ATGGTAAAAG-TGAT----CAGTC-TATTGTGTCAAATATGC-AAAAGA-TTTCAAAA--TAGTGTATACTT-ATATTAT-----TTAA-ACT-CGATCG---------TGAAC-GTGTTCAATCGTGGCCATCAAGAA-GAAGATCAAATC-AGAAGCAA-TAAACGA-ATAGTAAAATAAAAACCGGGACGGAAACAGAT--TAACGCAAACTGGTCAAGTTG--TA-TTTT-CCGTTTGCAAC----------TTTCTGGTTG-TTTTGTATTTTGTAT-CATGTT-GGATTTGGGTGAGTAATGAC-AAGTGGTGGGTGAGTGAA-TTATACCTGCCAACT-------CA
gi|7 : AGTGCTCTAGAATTACGCTCTCCCGT-C----ACCCGAG---GT----G--A---G-----T--AGTTTTAT--CGATC-TGG-AGAGTTGATCACCCCTA-CCGG-CTCACCCGTTC-GGGAAAGCG----TTTT-TCTGAAA---TATTATCGTTAC-AAAAACGACTACAGAAG-TTA--TGGTAAAAG-TGAT----CAGGT-TATTGTGTCAAATATGCAAGAAGAATTTCAAAAAGTAATGCA-ACT---TATTAT-ATTTTCAACACTGC
gi|8 : GTGCTTAAAAATTACACTC--CCGT-C----ACCTGAG---GT----G--A---GAGGTGT--TTTTTTTT--CTATC-AGG-AGAGTTGATC--CCCTA-C-TG-CTCACC-GTTT-GGGAAAGTG----TTTTGTCTGGAATATTATT-----TAC-------TATTACATAAAATTA--TGGTAAAAG-TGATCTAACAGGT-TA-TGTGTCAAATATGTGAAAAGAA---CAAAAAGTCATGTA-ACT---TATTAT-A
gi|9 : AGTGCTCTAGAATTACACTCTACCAT-C----ACCCGAG---GT----G--A---G-----GGGTTTTTTTT--CTGTC-GGG-AGAGTTGATCACCCTGA-CCTG-CTCACTCGTTC-GGGAAAGTGTTTTTTTT-TCTGAAATATTATTA-----AC--------ATTACGTAAA-TT--TTGCTAAAAATTGATCTGACAGGT-TA-TGTATCAAATATGTGAAAAaatttaaaaat