lowQualScore : 11 1 2222222222222222222222222222222222 2222222 1
lowQualScore : 2 1 22 1 1 33 22 333 3 55 1 4444 1 55 1 666666 2 6666 2 22 2 2 666 88 22 0 1 2 55 22 2 5555 0000000000000000000000000000000000 33 555 44 6 4444444 66 6 5
lowQualScore : . . .. . . .. .. ... . .. . .... . .. . ...... . .... . .. . . ... .. .. . . . .. .. . .... .................................. .. ... .. . ....... .. . .
lowQualScore : 1 8 55 8 8 22 55 222 6 77 8 3333 8 66 9 888888 2 6666 1 99 5 1 999 22 66 8 8 0 00 99 2 3333 9999999999999999999999999999999999 99 000 66 7 9999999 99 7 0
consensus : ATACTG-TAAAA-TCA--TTT-A-TTTT-CG--T---GGG-TT-TA-AAA---TT-TCGTGG-TTT----T-GACTCT----AA-TAATGA--ATTCGTT-GA---CATTAA-TTTTCGTTGA-T--TT--ATAA-TT----CAT--T---T------ATAT-----A------T----ATT--CA---TTT--T-AG--GC---CA--AACAAAATTTGT
Reference ( gi|18 ) : ATACTG-TAAAA-TCA--TTT-A-TTTT-TG--T---GGG-TG-TA-AAA---TT-TCGCGG-TTT----T-GAGTCT----AA-TAATGA--ATTTGTT-GA---CATTAA-TTTTCATTGA-T--TT--ATAA-TT----CAT--T---T------ATGT-----A------C----ATT--CA---TTT--T-AG--GC---CA--AATAAAATGTGT
gi|29 : ATACTG-TAAAA-TCA--TTT-A-TTTT-CG--T---GGG-TT-TA-AAA---TT-TTGTGG--TT----T-GACTCTATTAAA-TAATGA--ATTCGTT-
gi|11 : atATACTG-TAAAA-TCA--TTC-A-TTTC-TG--T---GAA-TT-TA-AA----TG-TTATGG-GTT----T-GACTCT----AA-TAATGA--ATTCTTT-GA---CATTTA-TATTTGTTGA-T--TT---TAA-
gi|13 : TACTG-TAAAA-TCA--TTT-A-TTTT-TG--T---GAG-TT-TA-AAA---TT-TCGTTG-TTT----T-GAATCT----AA-CAGTGA--ATTCATT-GA---CATTCA-TTTTCGTTGA-T--TT--TTAA-TT----CAT--T---T------AT-------------------ATT--CA---TTT--T-gcgcaaaaattcacagtggatttatgctgttttatttacttttgaaagcaccaatttttgatcctcaacaaaaattaatgattttaca
gi|16 : actTACTG-TAAAA-TCA--TTT-A-TTTT-CA--T---AGG-TT-TA-AAA---TT-TCGTTG-TTG----A-GAATCA----AA-TAATGA--ATTCGTT-GG---CATTAA-TTTTCGTTGA-T--TT--AAAA-TG----TAT--T---T------TTAT-----A------T----ATC--CA---TTT--TCAGT-GC---AA--AATcaatgcaaaaatttcccttagagaaaataactgctaaatttgcattgaagatgcata
gi|27 : atcTGCTG-TAATT-TAA--ATT-A-TTTT-CG--T---GGA-TT-TC-AAA---TT-TCGAGG-TTT----T-GACTCT----AA-TAATGA--ATTCGTT-TA---CATTAA-TTTTCGTTGA-T--TT--Attgtcgtggattta
gi|5 : TACTG-TAAAA-TCA--TGA-A-TTTT-TG--TTGGGGA-TG-TT-CAA---TT-TC
gi|28 : actgtaaaaatcatttaatttccgtgggttctaaatggtttccgactctaataataattcgtttaacatgatttttgttggtttataatcaatttatatacataattaatagttgcaaaaattggcgtgtattttccgttttgatttaccgcacaaataataaatTACTGATAAAA-TCA--TTTTA-TTTT-CG--T---GGG-TT-TA-AAC---TTGTTGTGG--------T-GACTCT----AATTAATTA--ATATGTT--A---CATTTA-ATTTCACTGA-a
gi|34 : TACTG-TAAAA---A--TTT-A-TTTT-TG--T---GGG-TT-TG-AAA---TT-TCGTTG-TTT----
gi|1 : acagACTG-TAAAA-TCA--TTT-A--TTT-TG--T---GGG-CGTTG-AAA---TT-TCCTGG-TTT----A-AAAATA----AA-TAATGA--ATTTGCT-GA---CATTAT-CTTTCGTTGATT--TT--ATAATTT----CA---G---T------ATAT-----A------T----ATTTCCA---TTT--TCAGT-GC---CA--AACAA
gi|17 : tcACTG-CAAAA-TCC--TTT-A-TTTT-TG--T---GGT-T--TA-AAT---TT-TTGTTG-TTT----T-GACTCT----AA-CAATGA--ATTCATT-GA---CA-CA------CATTGA-T--TT--ATCA-TT----CAT--T---TATATACATGT-----A------T----ATT--CA---TTT--A-AG--TG---CA--AAtttgttgtggatatttattttgtagttttagaaatcaccaaaatgatgaaataaatccccacatatatatttttgactctaacagtattgaataccagtgtagaatagacatagttcatgcagaaattctcagt
gi|12 : ACTG-TAAAA-TTA--TCA-A-ATTT-CG--T---GGC-TT-TG-AA----TT-TCGTTG-TTT----T-GATTCT----AA-TAATGA--ATTCGTT-GA---CATTAA-TATTAGTTGA-----T--ATAA-Taagttgtcttggatttatt
gi|5 : ACTG-TAAAAATCA--TTT-AATTTC-CG--T---GGG-TT-CT-AAA---T------GG-TTT----CCGACTCT----AA-TAAT-A--ATTCGTTTAA---CAT-GA-TTTTTGTTGG-T--TT--ATAA-TC----AAT--T---T------ATAT-----A------C----ATataagcgtaaaaattcatcattgcctacaaaaaataaaaagaagaaaagaaatcaattccccaacgaaaattaatgattgtacagt
gi|33 : ACTG-TAGAA-TCA--TTA-A-TTTT-CG--T---GGGATT-TT-GAT---TT-TCGTTG-TTT----T-aattaatagttgcaaaaattggcgtgtattttccgttttgatttaccgcacaaataataaatgaaattgaacatccccaacaaaaattcatgattttacagtaa
gi|2 : CTG-TAAAA-TCA--TTT-A-TTTTCTGCAT---GGGCTG--A-AAA---TT-TCGTGG-TTTAATTT-GACTCT----AA-CAATGA--ATTTGTT-GA---CATC-G-TATACATTTA-T--TT--AC-A-TT----CAT--A---T------AAGT-----G------CTAAAGTT--CA---TTcatg
gi|8 : CTG-TAAAA-TCA--TTT---TTCA-T---T---GGG-TT-TA-AAA---TT---ATAA-TTT----T-GACCAT----AA-TAATGT--ATTCATT-GATCACATTAA-TTT-CTTTGA-T--TT--ATA--TC----TAT--T---T------ATAT-----G------T----ATT--CA---TTT--T-AA--GT---GA--CA-AAAATTTGTgtggatttattttcattgtttctacttatatacccacaaaaattacgaaattaacaaccctcttcccccccccaataattaatgattttaccatatatatgtatatatatccaaacagtaaaaattctcagt
gi|4 : TG-TAAAA-TCA--TTT-A-TATT-TG--T---GGG-TT-AA-AAA---TT-TCTTGG-TTT----C-GAATCC----AA-AAATAA--ATTTGTT-GA---TAT-------------A-T------ATA-----------------T------ATAT-----A------T----ATT--CA---TTTCCT-GG--AC---CAGTAACAAAAtgggatttattttctatgagtcaagtaaataacaaaattaaatccccacaaagattcatgattttacagt
gi|7 : G-TAAAA-TCA--ATT-A-TTTT-CG--T---GGG-TT-TA-AAA---TT-CCGTGA-TTT------GAAACT----AA-TAATGA--ATTGGTT-TA---CATATA-TTTTCGTTGA-TA-AT--A-AA-TT----CAT--T---C------ATAT-----A------T----ATT--CA---TCA--T-AA--GTG--TA--AACAAatcattggtgtatttatcgtgttttgatctacccacaaaaattacgcattttaatatccccccccccccccccacccaatgtgtgattttgacagagtgtgt
gi|25 : -TAAAA-TCA--TTT-A-TTTT-CG--T---GGG-TT-TA-AAA---TT-TTGTGG-TTT----T-GACTCTA---AA-TAATGA--ATTCGTT-GA---CATCAA--TTTCACTGA-T--TT--ACAA-TT----tgtttactaaacattctggtggattcatttttgtttttatttattgacgaaaatcacaaaatgaaatcccgggcg
gi|10 : acct-TAAAA-TCGGTTTC-A-TTTT-CG--T---GAG-TT-TA-AAA---TT-TCGC-----------------T----A--TAATGA--ATTCGTT-GA---CATGAA-TTT--GTGGA-T-------TAA-AT----CATAAT---T------A--T-----A------C----ATA--AA---TTT--T-A
gi|9 : acttttAAAA-TCA--ATT-A-TTTT-CA--T---GGC-T--TACAAA---TT-TCATG---TT----T-AACTCT----AA--AATGAATATTCGTT-GATT-TATCAA-CT---ATTGA-TTATT--AT-A-TTATGGCAC--T---T------AAGTGCCAAA------C----ATT--CG---Taattgcaaagttcgttgtggactatttttctgtttttaatttacccatgaacataagttaaacaaatcaccagcgataattta
gi|3 : aAAA-TCC--TTT-A-TTTT--G--T---GGT-TT-TA-AAAATTTT-TCATGGGTTT----TAGAATCT----AA--AATGA--ATTCACT-GA---CAT--A-CATTCATTGA-T--TT--ATAA-TT----CAT--TAAGT------AT-T-----A------T----ATT--CATATTTT--T-AA--GTGCGCA--AATgtatttgttgttgtgttttatacccacgaaaatacggaaaataatccccaaacgaaaaatatgtgatttta
gi|15 : AA-TCT--TTT-A-TTTT-CG--T---GGA-TT-TA-AA----TT-TTGCGG-TTT----T-CACTCT----GA-TAATCT--ATTTGTT-GA---CATTAATTTTTCGTTGA-T--TTACATAT-TT----CGT--------------CGT-----G------G----ATT--TA---TTT--T-ttgttgtgtatttatttcactgtatgttatttacacatgaaaaataacaaaattaaatccccaacgaaaatcttgcatcatttaca
gi|14 : gTTTCATTGA-T--TT--ACAA-TT----CAT--T---T------ATAT-----G------T----ATT--CA---TTT--C-AAGTGC---CA--AAcgttgttttacatgattattatatacccgtgcaaataaggaatta
gi|20 : TTCGTTGA-T--TT--ATAA-TT----CAT--T---T------ATAT-----ATACGAGT----ATT--CA---TTT--T-atttgttgttgatatattttcattgttttgatatgcccatgatttattttcattgtttttagatgcctatgaaaataattaaactaaatctccaacgaaaatttgtgattttacagtaaa
13 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|6 ): AAAGATTCATTTGATTTTCATGATTTTAAAATTCATGGTTTTGAATTTACTTTGATTCATTATTCATGATATTATTGAATCATTTAAATTCATATATTTACATTCTCAAAGCAAAAATCTGTTGTGACCTTATTTTGTGTTTTTTATTTAGCCCACAAAAAATAATGAAATTCAAATCCCCATTGAAAATTTTGATTTTTAC
Unaligned ( gi|19 ): AATGTTCACTAGGTTTTCCTTGCTATTGCCATATATATTCATTATAAGTGCAACAGTTCATTGTGGAATTATTTTCGTTTTTTTTTTTCAACGAAAATAATGAAATTAAATCCCTATTGAAAATC
Unaligned ( gi|21 ): TTTAATCCTATAATAATTCAATTATATGATTTATTCATTTTTAGTGCAAAACACTCATCATGGATTTATTTTCGTTGTTTTTATATACCCTCGAAAATACTCAACAAAAGTTCATGATTTTAT
Unaligned ( gi|22 ): TGATATATATTATTTTAAGTGCCAAACAATTCGTTGTGATTTGTCGTTTTTTACCATGAGAAATAACGAAGATTCCATCCTCAATGAAAATTGACTGATTTTACA
Unaligned ( gi|23 ): TCAGTGAAAATATTCGTCGTGGATTTATGTTATTATTTTTTTTTACTTACAAAAATAGCAAAATTAAATCCCCGATGAAAATCTATATTTTTTTTACAGTAC
Unaligned ( gi|24 ): ATTCACTTCCAGTGCAAAAATTCAACGTAGATTTCTTTTCGTCGTTTTTATTTACCCAAGAAAATAACAAAGCTAAATCCCCAATGAAAATTCATGATT
Unaligned ( gi|26 ): TTGGTTTATAATTCATTTATACATAATAAAGTGCAAAAATTGGCGTGTATTTTCCGTTTTGATTTACCCACAAAAATAATGAAATTAAATCC
Unaligned ( gi|30 ): AAAGTCAGAATTTCATTTTTGAGAGTCTATTTTCAAATGATGTTGTGCAACCAAATGTCAATACGTAGATA
Unaligned ( gi|31 ): TTATTACCCATGAAAATAACAAAATTAAATCCCCAACAAAAATTTTTGATTTTACAGTA
Unaligned ( gi|32 ): GTATTTATCCACGAAAGTAATGAAATTAAATCCCCAACGAAAATGAATGATT
Unaligned ( gi|35 ): ATAACTAAATTAAATCCCAACGAAAATTCACGATTTTACAGTAAA
Unaligned ( gi|36 ): ATTCATATAAGTGCAAAAATTTGTCGTGGATTTATTTTCGTT
Unaligned ( gi|37 ): GTAATCATTCAAATTTCTGTGGATCTTGATCCTAA
Alignments
lowQualScore : 44444444444444444
lowQualScore : 1 1 22 1 1 222 666 33 1 1 8888888 99999 1 1 222 555555 1 6666 1 22 1 333 888888 1 22 4 2 9999999 8888888 666666 9999 444 00000000000000000 3 3
lowQualScore : . . .. . . ... ... .. . . ....... ..... . . ... ...... . .... . .. . ... ...... . .. . . ....... ....... ...... .... ... ................. . .
lowQualScore : 8 5 11 5 5 777 999 77 6 6 0000000 00000 6 6 999 444444 9 0000 9 22 9 555 666666 8 66 0 0 7777777 2222222 888888 3333 777 22222222222222222 1 1
consensus : ATACTG-TAAAA-TCA--TTT-A-TTTTC---GT---GGG--T-T-TAA-------AA----TT-TCGTGG-TT---T----T-GACTC-T----A-A-TAATGAATTCGTT-GA---CATTAA-TTTTCGTTGA-TTT--AT-AA-TTCAT---T---TATA------TA------TATT----CA---TTT--T-AG-GC-CA--A--AC-A-AAATTTGT
Reference ( family-766 ) : ATACTG-TAAAA-TCA--TTT-A-TTTTC---GT---GGG--T-T-TAA-------AA----TT-TCGTGG-TT---T----T-GACTC-T----A-A-TAATGAATTCGTT-GA---CATTAA-TTTTCGTTGA-TTT--AT-AA-TTCAT---T---TATA------TA------TATT----CA---TTT--T-AG-GC-CA--A--AC-A-AAATTTGT
gi|1 : ACTG-TAAAA-TCA--TTT-A-TTTT----GT---GGG--CGT-TGA-------AA----TT-TCCTGG-TT---T----A-AAAAT-A----A-A-TAATGAATTTGCT-GA---CATTAT-CTTTCGTTGATTTT--AT-AATTTCA----G---TATA------TA------TATTTC--CA---TTT--TCAGTGC-CA--A--AC----AATTTGT
gi|10 : tc-TAAAA-TCGGTTTC-A-TTTTC---GT---GAG--T-T-TAA-------AA----TT-TCG------------------CT---------A-TAATGAATTCGTT-GA---CATGAA-TTT--GTGGA-T-----T-AA-ATCATAA-T---TATA------CA------TA------AA---TTT--T-A------A--ATTGC-A-AAGTTCGTtgtggatatttattttgtagttttagaaatcaccaaaatgatgaaataaatccccacatatatatttttgactctaacagtattgaataccagtgtagaatagacatagttcatgcagaaattctcagt
gi|11 : acttttATACTG-TAAAA-TCA--TTC-A-TTTCT---GT---GAA--T-T-TAA-------A-----TG-TTATGG-GT---T----T-GACTC-T----A-A-TAATGAATTCTTT-GA---CATTTA-TATTTGTTGA-TTT---T-AA-tgtggactatttttctgtttttaatttacccatgaacataagttaaacaaatcaccagcgataattta
gi|12 : ACTG-TAAAA-TTA--TCA-A-ATTTC---GT---GGC--T-T-TGA-------A-----TT-TCGTTG-TT---T----T-GATTC-T----A-A-TAATGAATTCGTT-GA---CATTAA-TATTAGTTGA---T--AT-AA-Tgcgcaaaaattcacagtggatttatgctgttttatttacttttgaaagcaccaatttttgatcctcaacaaaaattaatgattttaca
gi|12 : ACTG-TACAA-TCA--TTA-A-TTTTC---GT---TGG--ataagcgtaaaaattcatcattgcctacaaaaaataaaaagaagaaaagaaatcaattccccaacgaaaattaatgattgtacagt
gi|13 : actgtaaaattatcaaatttcgtggctttgaatttcgttgttttgattctaataatgaattcgttgacattaatattagttgatataatataagcgtaaaaattcatcattgcctacaaaaaataaaaagaagaaaagaaatcaattccTACTG-TAAAA-TCA--TTT-A-TTTTT---GT---GAG--T-T-TAA-------AA----TT-TCGTTG-TT---T----T-GAATC-T----A-A-CAGTGAATTCATT-GA---CATTCA-TTTTCGTTGA-TTT--TT-AA-TTCAT---T-------------TA------TATT----CA---TTT--T-------CA--AT-GCAA-AAATTT
gi|14 : actTTTCATTGA-TTT--AC-AA-TTCAT---T---TATA------TG------TATT----CA---TTT--C-AA-GTGC-------C-A-AAATTTGTcccttagagaaaataactgctaaatttgcattgaagatgcata
gi|15 : AA-TCT--TTT-A-TTTTC---GT---GGA--T-T-TAA-------A-----TT-TTGCGG-TT---T----T-CACTC-T----G-A-TAATCTATTTGTT-GA---CATTAATTTTTCGTTGA-TTTACAT-AT-TTCGT---------CG------TG------GATT----TA---TTT--T-tgttgatatattttcattgttttgatatgcccatgatttattttcattgtttttagatgcctatgaaaataattaaactaaatctccaacgaaaatttgtgattttacagtaaa
gi|16 : gTACTG-TAAAA-TCA--TTT-A-TTTTC---AT---AGG--T-T-TAA-------AA----TT-TCGTTG-TT---G----A-GAATC-A----A-A-TAATGAATTCGTT-GG---CATTAA-TTTTCGTTGA-TTT--AA-AA-TGTAT---T---TTTA------TA------TATC----CA---TTT--T-------CA--GT-GC-A-AAATTTGTcgttgttttacatgattattatatacccgtgcaaataaggaatta
gi|17 : atcACTG-CAAAA-TCC--TTT-A-TTTTT---GT---GG---T-T-TAA-------AT----TT-TTGTTG-TT---T----T-GACTC-T----A-A-CAATGAATTCATT-GA---CA-CA------CATTGA-TTT--AT-CA-TTCAT---T---TATATACATGTA------TATT----CA---TTT--A-AG-TG-CA--------A-AAAGTTGTcgtggattta
gi|18 : ATACTG-TAAAA-TCA--TTT-A-TTTTT---GT---GGG--T-G-TAA-------AA----TT-TCGCGG-TT---T----T-GAGTC-T----A-A-TAATGAATTTGTT-GA---CATTAA-TTTTCATTGA-TTT--AT-AA-TTCAT---T---TATG------TA------CATT----CA---TTT--T-AG-GC-CA--A--AT-A-AAATGTGTcttggatttatt
gi|2 : CTG-TAAAA-TCA--TTT-A-TTTTCTGCAT---GGG--C-T-GAA-------AA----TT-TCGTGG-TT---TAATTT-GACTC-T----A-A-CAATGAATTTGTT-GA---CA--------TCG-------T--AT-A----CAT---T---TATT------TA------CATT----CA---TAT--A-AGTGC-TA--A--A
gi|20 : TTCGTTGA-TTT--AT-AA-TTCAT---T---TATA------TATACGAGTATT----CA---TTT--T-------CA--AT-GC-A-AAACTTgttcattgtggatttattttcattgtttctacttatatacccacaaaaattacgaaattaacaaccctcttcccccccccaataattaatgattttaccatatatatgtatatatatccaaacagtaaaaattctcagt
gi|20 : CTG-TAAAA-TCA--TAA-A-TTTTC---GTCGGGGA--T-T-TAATTC----AATTATTT-CCGTGG-CT---cgtgggtttttcatttagccacggaaataattgaattaaatccccgacgaaaatttatgattttacag
gi|25 : ttcgttgatttataattcatttatatatacgagtattcattttcaatgcaaaacttcgtgggtttttcattt-TAAAA-TCA--TTT-A-TTTTC---GT---GGG--T-T-TAA-------AA----TT-TTGTGG-TT---T----T-GACTC-TA---A-A-TAATGAATTCGTT-GA---CATCAA--TTTCACTGA-TTT--AC-AA-TT
gi|27 : acctTGCTG-TAATT-TAA--ATT-A-TTTTC---GT---GGA--T-T-TCA-------AA----TT-TCGAGG-TT---T----T-GACTC-T----A-A-TAATGAATTCGTT-TA---CATTAA-TTTTCGTTGA-TTT--A
gi|28 : TACTGATAAAA-TCA--TTTTA-TTTTC---GT---GGG--T-T-TAA-------AC----TTGTTGTGG-----------T-GACTC-T----A-ATTAATTAATATGTT--A---CATTTA-ATTTCACTGA-
gi|29 : ATACTG-TAAAA-TCA--TTT-A-TTTTC---GT---GGG--T-T-TAA-------AA----TT-TTGTGG--T---T----T-GACTC-TATTAA-A-TAATGAATTCGTT-
gi|3 : atAAA-TCC--TTT-A-TTTT----GT---GGT--T-T-TAA-------AAATT-TT-TCATGGGTT---T----TAGAATC-T----A-A--AATGAATTCACT-GA---CAT--A-CATTCATTGA-TTT--AT-AA-TTCAT---TAAGTAT-------TA------TATT----CATATTTT--T-AA-GT--------GC-GCAAATTTGT
gi|32 : AA-TCA--TTC-A-TTTTC---GTTGGGGA--T-T-TAATTTCATTAC----TT-TCGTGG-tgtgtatttatttcactgtatgttatttacacatgaaaaataacaaaattaaatccccaacgaaaatcttgcatcatttaca
gi|33 : gtatttatACTG-TAGAA-TCA--TTA-A-TTTTC---GT---GGGA-T-T-TTG-------AT----TT-TCGTTG-TT---T----T-
gi|34 : TACTG-TAAAA---A--TTT-A-TTTTT---GT---GGG--T-T-TGA-------AA----TT-TCGTTG-TT---T----catg
gi|4 : acagTG-TAAAA-TCA--TTT-A-TATTT---GT---GGG--T-T-AAA-------AA----TT-TCTTGG-TT---T----C-GAATC-C----A-A-AAATAAATTTGTT-GA---TA-TA---------------T--AT-A--------------TATA------TA------TATT----CA---TTTCCT-GG-AC-CAGTA--AC-A-AAA
gi|5 : ACTG-TAAAAATCA--TTT-AATTTCC---GT---GGG--T-TCTAA-------A-----------TGG-TT---T----CCGACTC-T----A-A-TAAT-AATTCGTTTAA---CAT-GA-TTTTTGTTGG-TTT--AT-AA-TCAAT---T---TATA------TA------CATatcattggtgtatttatcgtgttttgatctacccacaaaaattacgcattttaatatccccccccccccccccacccaatgtgtgattttgacagagtgtgt
gi|7 : G-TAAAA-TCA--ATT-A-TTTTC---GT---GGG--T-T-TAA-------AA----TT-CCGTGA-TT---T------GAAAC-T----A-A-TAATGAATTGGTT-TA---CATATA-TTTTCGTTGA--TA--ATAAA-TTCAT---T---CATA------TA------TATT----CA---TCA--T-AA-GTGTA--A--AC-A-ATGTTTaattaatagttgcaaaaattggcgtgtattttccgttttgatttaccgcacaaataataaatgaaattgaacatccccaacaaaaattcatgattttacagtaa
gi|8 : CTG-TAAAA-TCA--TTT-----TTC---ATT--GGG--T-T-TAA-------AA----TT---ATAA-TT---T----T-GACCA-T----A-A-TAATGTATTCATT-GATCACATTAA-TTT-CTTTGA-TTT--AT-A--TCTAT---T---TATA------TG------TATT----CA---TTT--T-AA-GT-GA--C--A--A-AAATTTGTactaaacattctggtggattcatttttgtttttatttattgacgaaaatcacaaaatgaaatcccgggcg
gi|8 : ACTG-TAAAA-TCA--TGA-A-TCTTT---GT---GGGGAT-T-T---------AA----TT-TTGTTA-TTTACT----T-GACTCAT----AGA-AAATAAATCC--C-AA---CA--AA-TTTTTGTC-A-CTT--AA-AA-TGAAT---A---CATA------TA------AATtgggatttattttctatgagtcaagtaaataacaaaattaaatccccacaaagattcatgattttacagt
gi|9 : ctgtaaaatcatttttcattgggtttaaaattataattttgaccataataatgtattcattgatcacattaatttctttgatttatatctAAAA-TCA--ATT-A-TTTTC---AT---GGC--T-T-ACA-------AA----TT-TCATG---T---T----T-AACTC-T----A-A--AATGAAT-------A------------TTCGTTGA-TTT--ATCAA-CT-ATTGAT---TAT-------TA------TATTATGGCA---CTT--A-AGTGC-CA--A--AC-A-
12 sequences could not be aligned to this reference sequence:
Unaligned ( gi|6 ): AAAGATTCATTTGATTTTCATGATTTTAAAATTCATGGTTTTGAATTTACTTTGATTCATTATTCATGATATTATTGAATCATTTAAATTCATATATTTACATTCTCAAAGCAAAAATCTGTTGTGACCTTATTTTGTGTTTTTTATTTAGCCCACAAAAAATAATGAAATTCAAATCCCCATTGAAAATTTTGATTTTTAC
Unaligned ( gi|19 ): AATGTTCACTAGGTTTTCCTTGCTATTGCCATATATATTCATTATAAGTGCAACAGTTCATTGTGGAATTATTTTCGTTTTTTTTTTTCAACGAAAATAATGAAATTAAATCCCTATTGAAAATC
Unaligned ( gi|21 ): TTTAATCCTATAATAATTCAATTATATGATTTATTCATTTTTAGTGCAAAACACTCATCATGGATTTATTTTCGTTGTTTTTATATACCCTCGAAAATACTCAACAAAAGTTCATGATTTTAT
Unaligned ( gi|22 ): TGATATATATTATTTTAAGTGCCAAACAATTCGTTGTGATTTGTCGTTTTTTACCATGAGAAATAACGAAGATTCCATCCTCAATGAAAATTGACTGATTTTACA
Unaligned ( gi|23 ): TCAGTGAAAATATTCGTCGTGGATTTATGTTATTATTTTTTTTTACTTACAAAAATAGCAAAATTAAATCCCCGATGAAAATCTATATTTTTTTTACAGTAC
Unaligned ( gi|24 ): ATTCACTTCCAGTGCAAAAATTCAACGTAGATTTCTTTTCGTCGTTTTTATTTACCCAAGAAAATAACAAAGCTAAATCCCCAATGAAAATTCATGATT
Unaligned ( gi|26 ): TTGGTTTATAATTCATTTATACATAATAAAGTGCAAAAATTGGCGTGTATTTTCCGTTTTGATTTACCCACAAAAATAATGAAATTAAATCC
Unaligned ( gi|30 ): AAAGTCAGAATTTCATTTTTGAGAGTCTATTTTCAAATGATGTTGTGCAACCAAATGTCAATACGTAGATA
Unaligned ( gi|31 ): TTATTACCCATGAAAATAACAAAATTAAATCCCCAACAAAAATTTTTGATTTTACAGTA
Unaligned ( gi|35 ): ATAACTAAATTAAATCCCAACGAAAATTCACGATTTTACAGTAAA
Unaligned ( gi|36 ): ATTCATATAAGTGCAAAAATTTGTCGTGGATTTATTTTCGTT
Unaligned ( gi|37 ): GTAATCATTCAAATTTCTGTGGATCTTGATCCTAA
Alignments
lowQualScore : 44444444444444444
lowQualScore : 1 1 22 1 1 222 666 33 1 1 8888888 99999 1 1 222 555555 1 6666 1 22 1 333 888888 1 22 4 2 9999999 8888888 666666 9999 444 00000000000000000 3 3
lowQualScore : . . .. . . ... ... .. . . ....... ..... . . ... ...... . .... . .. . ... ...... . .. . . ....... ....... ...... .... ... ................. . .
lowQualScore : 8 5 11 5 5 777 999 77 6 6 0000000 00000 6 6 999 444444 9 0000 9 22 9 555 666666 8 66 0 0 7777777 2222222 888888 3333 777 22222222222222222 1 1
consensus : ATACTG-TAAAA-TCA--TTT-A-TTTTC---GT---GGG--T-T-TAA-------AA----TT-TCGTGG-TT---T----T-GACTC-T----A-A-TAATGAATTCGTT-GA---CATTAA-TTTTCGTTGA-TTT--AT-AA-TTCAT---T---TATA------TA------TATT----CA---TTT--T-AG-GC-CA--A--AC-A-AAATTTGT
Reference ( family-766 ) : ATACTG-TAAAA-TCA--TTT-A-TTTTC---GT---GGG--T-T-TAA-------AA----TT-TCGTGG-TT---T----T-GACTC-T----A-A-TAATGAATTCGTT-GA---CATTAA-TTTTCGTTGA-TTT--AT-AA-TTCAT---T---TATA------TA------TATT----CA---TTT--T-AG-GC-CA--A--AC-A-AAATTTGT
gi|1 : ACTG-TAAAA-TCA--TTT-A-TTTT----GT---GGG--CGT-TGA-------AA----TT-TCCTGG-TT---T----A-AAAAT-A----A-A-TAATGAATTTGCT-GA---CATTAT-CTTTCGTTGATTTT--AT-AATTTCA----G---TATA------TA------TATTTC--CA---TTT--TCAGTGC-CA--A--AC----AATTTGT
gi|10 : tc-TAAAA-TCGGTTTC-A-TTTTC---GT---GAG--T-T-TAA-------AA----TT-TCG------------------CT---------A-TAATGAATTCGTT-GA---CATGAA-TTT--GTGGA-T-----T-AA-ATCATAA-T---TATA------CA------TA------AA---TTT--T-A------A--ATTGC-A-AAGTTCGTtgtggatatttattttgtagttttagaaatcaccaaaatgatgaaataaatccccacatatatatttttgactctaacagtattgaataccagtgtagaatagacatagttcatgcagaaattctcagt
gi|11 : acttttATACTG-TAAAA-TCA--TTC-A-TTTCT---GT---GAA--T-T-TAA-------A-----TG-TTATGG-GT---T----T-GACTC-T----A-A-TAATGAATTCTTT-GA---CATTTA-TATTTGTTGA-TTT---T-AA-tgtggactatttttctgtttttaatttacccatgaacataagttaaacaaatcaccagcgataattta
gi|12 : ACTG-TAAAA-TTA--TCA-A-ATTTC---GT---GGC--T-T-TGA-------A-----TT-TCGTTG-TT---T----T-GATTC-T----A-A-TAATGAATTCGTT-GA---CATTAA-TATTAGTTGA---T--AT-AA-Tgcgcaaaaattcacagtggatttatgctgttttatttacttttgaaagcaccaatttttgatcctcaacaaaaattaatgattttaca
gi|12 : ACTG-TACAA-TCA--TTA-A-TTTTC---GT---TGG--ataagcgtaaaaattcatcattgcctacaaaaaataaaaagaagaaaagaaatcaattccccaacgaaaattaatgattgtacagt
gi|13 : actgtaaaattatcaaatttcgtggctttgaatttcgttgttttgattctaataatgaattcgttgacattaatattagttgatataatataagcgtaaaaattcatcattgcctacaaaaaataaaaagaagaaaagaaatcaattccTACTG-TAAAA-TCA--TTT-A-TTTTT---GT---GAG--T-T-TAA-------AA----TT-TCGTTG-TT---T----T-GAATC-T----A-A-CAGTGAATTCATT-GA---CATTCA-TTTTCGTTGA-TTT--TT-AA-TTCAT---T-------------TA------TATT----CA---TTT--T-------CA--AT-GCAA-AAATTT
gi|14 : actTTTCATTGA-TTT--AC-AA-TTCAT---T---TATA------TG------TATT----CA---TTT--C-AA-GTGC-------C-A-AAATTTGTcccttagagaaaataactgctaaatttgcattgaagatgcata
gi|15 : AA-TCT--TTT-A-TTTTC---GT---GGA--T-T-TAA-------A-----TT-TTGCGG-TT---T----T-CACTC-T----G-A-TAATCTATTTGTT-GA---CATTAATTTTTCGTTGA-TTTACAT-AT-TTCGT---------CG------TG------GATT----TA---TTT--T-tgttgatatattttcattgttttgatatgcccatgatttattttcattgtttttagatgcctatgaaaataattaaactaaatctccaacgaaaatttgtgattttacagtaaa
gi|16 : gTACTG-TAAAA-TCA--TTT-A-TTTTC---AT---AGG--T-T-TAA-------AA----TT-TCGTTG-TT---G----A-GAATC-A----A-A-TAATGAATTCGTT-GG---CATTAA-TTTTCGTTGA-TTT--AA-AA-TGTAT---T---TTTA------TA------TATC----CA---TTT--T-------CA--GT-GC-A-AAATTTGTcgttgttttacatgattattatatacccgtgcaaataaggaatta
gi|17 : atcACTG-CAAAA-TCC--TTT-A-TTTTT---GT---GG---T-T-TAA-------AT----TT-TTGTTG-TT---T----T-GACTC-T----A-A-CAATGAATTCATT-GA---CA-CA------CATTGA-TTT--AT-CA-TTCAT---T---TATATACATGTA------TATT----CA---TTT--A-AG-TG-CA--------A-AAAGTTGTcgtggattta
gi|18 : ATACTG-TAAAA-TCA--TTT-A-TTTTT---GT---GGG--T-G-TAA-------AA----TT-TCGCGG-TT---T----T-GAGTC-T----A-A-TAATGAATTTGTT-GA---CATTAA-TTTTCATTGA-TTT--AT-AA-TTCAT---T---TATG------TA------CATT----CA---TTT--T-AG-GC-CA--A--AT-A-AAATGTGTcttggatttatt
gi|2 : CTG-TAAAA-TCA--TTT-A-TTTTCTGCAT---GGG--C-T-GAA-------AA----TT-TCGTGG-TT---TAATTT-GACTC-T----A-A-CAATGAATTTGTT-GA---CA--------TCG-------T--AT-A----CAT---T---TATT------TA------CATT----CA---TAT--A-AGTGC-TA--A--A
gi|20 : TTCGTTGA-TTT--AT-AA-TTCAT---T---TATA------TATACGAGTATT----CA---TTT--T-------CA--AT-GC-A-AAACTTgttcattgtggatttattttcattgtttctacttatatacccacaaaaattacgaaattaacaaccctcttcccccccccaataattaatgattttaccatatatatgtatatatatccaaacagtaaaaattctcagt
gi|20 : CTG-TAAAA-TCA--TAA-A-TTTTC---GTCGGGGA--T-T-TAATTC----AATTATTT-CCGTGG-CT---cgtgggtttttcatttagccacggaaataattgaattaaatccccgacgaaaatttatgattttacag
gi|25 : ttcgttgatttataattcatttatatatacgagtattcattttcaatgcaaaacttcgtgggtttttcattt-TAAAA-TCA--TTT-A-TTTTC---GT---GGG--T-T-TAA-------AA----TT-TTGTGG-TT---T----T-GACTC-TA---A-A-TAATGAATTCGTT-GA---CATCAA--TTTCACTGA-TTT--AC-AA-TT
gi|27 : acctTGCTG-TAATT-TAA--ATT-A-TTTTC---GT---GGA--T-T-TCA-------AA----TT-TCGAGG-TT---T----T-GACTC-T----A-A-TAATGAATTCGTT-TA---CATTAA-TTTTCGTTGA-TTT--A
gi|28 : TACTGATAAAA-TCA--TTTTA-TTTTC---GT---GGG--T-T-TAA-------AC----TTGTTGTGG-----------T-GACTC-T----A-ATTAATTAATATGTT--A---CATTTA-ATTTCACTGA-
gi|29 : ATACTG-TAAAA-TCA--TTT-A-TTTTC---GT---GGG--T-T-TAA-------AA----TT-TTGTGG--T---T----T-GACTC-TATTAA-A-TAATGAATTCGTT-
gi|3 : atAAA-TCC--TTT-A-TTTT----GT---GGT--T-T-TAA-------AAATT-TT-TCATGGGTT---T----TAGAATC-T----A-A--AATGAATTCACT-GA---CAT--A-CATTCATTGA-TTT--AT-AA-TTCAT---TAAGTAT-------TA------TATT----CATATTTT--T-AA-GT--------GC-GCAAATTTGT
gi|32 : AA-TCA--TTC-A-TTTTC---GTTGGGGA--T-T-TAATTTCATTAC----TT-TCGTGG-tgtgtatttatttcactgtatgttatttacacatgaaaaataacaaaattaaatccccaacgaaaatcttgcatcatttaca
gi|33 : gtatttatACTG-TAGAA-TCA--TTA-A-TTTTC---GT---GGGA-T-T-TTG-------AT----TT-TCGTTG-TT---T----T-
gi|34 : TACTG-TAAAA---A--TTT-A-TTTTT---GT---GGG--T-T-TGA-------AA----TT-TCGTTG-TT---T----catg
gi|4 : acagTG-TAAAA-TCA--TTT-A-TATTT---GT---GGG--T-T-AAA-------AA----TT-TCTTGG-TT---T----C-GAATC-C----A-A-AAATAAATTTGTT-GA---TA-TA---------------T--AT-A--------------TATA------TA------TATT----CA---TTTCCT-GG-AC-CAGTA--AC-A-AAA
gi|5 : ACTG-TAAAAATCA--TTT-AATTTCC---GT---GGG--T-TCTAA-------A-----------TGG-TT---T----CCGACTC-T----A-A-TAAT-AATTCGTTTAA---CAT-GA-TTTTTGTTGG-TTT--AT-AA-TCAAT---T---TATA------TA------CATatcattggtgtatttatcgtgttttgatctacccacaaaaattacgcattttaatatccccccccccccccccacccaatgtgtgattttgacagagtgtgt
gi|7 : G-TAAAA-TCA--ATT-A-TTTTC---GT---GGG--T-T-TAA-------AA----TT-CCGTGA-TT---T------GAAAC-T----A-A-TAATGAATTGGTT-TA---CATATA-TTTTCGTTGA--TA--ATAAA-TTCAT---T---CATA------TA------TATT----CA---TCA--T-AA-GTGTA--A--AC-A-ATGTTTaattaatagttgcaaaaattggcgtgtattttccgttttgatttaccgcacaaataataaatgaaattgaacatccccaacaaaaattcatgattttacagtaa
gi|8 : CTG-TAAAA-TCA--TTT-----TTC---ATT--GGG--T-T-TAA-------AA----TT---ATAA-TT---T----T-GACCA-T----A-A-TAATGTATTCATT-GATCACATTAA-TTT-CTTTGA-TTT--AT-A--TCTAT---T---TATA------TG------TATT----CA---TTT--T-AA-GT-GA--C--A--A-AAATTTGTactaaacattctggtggattcatttttgtttttatttattgacgaaaatcacaaaatgaaatcccgggcg
gi|8 : ACTG-TAAAA-TCA--TGA-A-TCTTT---GT---GGGGAT-T-T---------AA----TT-TTGTTA-TTTACT----T-GACTCAT----AGA-AAATAAATCC--C-AA---CA--AA-TTTTTGTC-A-CTT--AA-AA-TGAAT---A---CATA------TA------AATtgggatttattttctatgagtcaagtaaataacaaaattaaatccccacaaagattcatgattttacagt
gi|9 : ctgtaaaatcatttttcattgggtttaaaattataattttgaccataataatgtattcattgatcacattaatttctttgatttatatctAAAA-TCA--ATT-A-TTTTC---AT---GGC--T-T-ACA-------AA----TT-TCATG---T---T----T-AACTC-T----A-A--AATGAAT-------A------------TTCGTTGA-TTT--ATCAA-CT-ATTGAT---TAT-------TA------TATTATGGCA---CTT--A-AGTGC-CA--A--AC-A-
blockSeqs : A A GT T A TGC CGG GA . C TTTCATT ATTAT G G TAC AATTT A ATTA G TT T TCA TTAATT . AC A . TAAG ATACATG TACGAG ATGG TAT CCTGGACCAGTA A C
blockSeqs : . . . . . . TGG A . . TTC AATT . . . TA . A . T . . TGAAT . . C . TGAT A . . . AAGTGCTAA . .
blockSeqs : . . . . . . T . . . . A . . . CC . . . T . . TTTAT . . . . AAT A . . . TAAGTGTAA . .
blockSeqs : . . . . . . . . . . . A . . . T . . . T . . TTAAT . . . . T G . . . AAGTGCCAA . .
blockSeqs : . . . . . . . . . . . A . . . T . . . C . . TTCAT . . . . T A . . . TAGGCCAA . .
blockSeqs : . . . . . . . . . . . T . . . T . . . T . . TTAAT . . . . T G . . . TAAGTGAC . .
blockSeqs : . . . . . . . . . . . A . . . T . . . T . . TTAAT . . . . T T . . . CAAGTGC . .
blockSeqs : . . . . . . . . . . . A . . . A . . . C . . TTAAT . . . . T A . . . AAGTGCA . .
blockSeqs : . . . . . . . . . . . A . . . T . . . T . . TTTAA . . . . T A . . . TAAATT . .
blockSeqs : . . . . . . . . . . . A . . . T . . . C . . TATAT . . . . T A . . . TCAAT . .
blockSeqs : . . . . . . . . . . . C . . . T . . . T . . TTAAT . . . . T A . . . TCAGT . .
blockSeqs : . . . . . . . . . . . A . . . T . . . T . . TCAA . . . . T A . . . TCAAT . .
blockSeqs : . . . . . . . . . . . C . . . T . . . T . . TGAT . . . . T A . . . TAAGT
blockSeqs : . . . . . . . . . . . T . . . T . . . A . . TAC . . . . A . . . .
blockSeqs : . . . . . . . . . . . A . . . T . . . T . . AAT . . . . . . .
blockSeqs : . . . . . . . . . . . A . . . C . . . T . . CA . . . . . . .
blockSeqs : . . . . . . . . . . . A . . . T . . . T . . TA . . . .
blockSeqs : . . . . . . . . . . . A . . . T . . . A . . . . . . .
blockSeqs : . . . . . . . . . . . A . . . T . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . A . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . .
blockSeqs : . . . . . . .
blockSeqCons : **** TAAGTGCA*********
originalCons : ATACTG-TAAAA-TCA--TTT-A-TTTTC---GT---GGG--T-T-TAA-------AA----TT-TCGTGG-TT---T----T-GACTC-T----A-A-TAATGAATTCGTT-GA---CATTAA-TTTTCGTTGA-TTT--AT-AA-TTCAT---T---TATA------TA------TATT----CA---TTT--T-AG-GC-CA--A--AC-A-AAATTTGT
finalCons : ATACTG-TAAAA-TCA--TTT-A-TTTTC---GT---GGG--T-T-TAA-------AA----TT-TCGTGG-TT---T----T-GACTC-T----A-A-TAATGAATTCGTT-GA---CATTAA-TTTTCGTTGA-TTT--AT-AA-TTCAT---T---TATA------TA------TATT----CA---TTTTAAGTGCA---------AC-A-AAATTTGT
12 sequences could not be aligned to this reference sequence:
Unaligned ( gi|6 ): AAAGATTCATTTGATTTTCATGATTTTAAAATTCATGGTTTTGAATTTACTTTGATTCATTATTCATGATATTATTGAATCATTTAAATTCATATATTTACATTCTCAAAGCAAAAATCTGTTGTGACCTTATTTTGTGTTTTTTATTTAGCCCACAAAAAATAATGAAATTCAAATCCCCATTGAAAATTTTGATTTTTAC
Unaligned ( gi|19 ): AATGTTCACTAGGTTTTCCTTGCTATTGCCATATATATTCATTATAAGTGCAACAGTTCATTGTGGAATTATTTTCGTTTTTTTTTTTCAACGAAAATAATGAAATTAAATCCCTATTGAAAATC
Unaligned ( gi|21 ): TTTAATCCTATAATAATTCAATTATATGATTTATTCATTTTTAGTGCAAAACACTCATCATGGATTTATTTTCGTTGTTTTTATATACCCTCGAAAATACTCAACAAAAGTTCATGATTTTAT
Unaligned ( gi|22 ): TGATATATATTATTTTAAGTGCCAAACAATTCGTTGTGATTTGTCGTTTTTTACCATGAGAAATAACGAAGATTCCATCCTCAATGAAAATTGACTGATTTTACA
Unaligned ( gi|23 ): TCAGTGAAAATATTCGTCGTGGATTTATGTTATTATTTTTTTTTACTTACAAAAATAGCAAAATTAAATCCCCGATGAAAATCTATATTTTTTTTACAGTAC
Unaligned ( gi|24 ): ATTCACTTCCAGTGCAAAAATTCAACGTAGATTTCTTTTCGTCGTTTTTATTTACCCAAGAAAATAACAAAGCTAAATCCCCAATGAAAATTCATGATT
Unaligned ( gi|26 ): TTGGTTTATAATTCATTTATACATAATAAAGTGCAAAAATTGGCGTGTATTTTCCGTTTTGATTTACCCACAAAAATAATGAAATTAAATCC
Unaligned ( gi|30 ): AAAGTCAGAATTTCATTTTTGAGAGTCTATTTTCAAATGATGTTGTGCAACCAAATGTCAATACGTAGATA
Unaligned ( gi|31 ): TTATTACCCATGAAAATAACAAAATTAAATCCCCAACAAAAATTTTTGATTTTACAGTA
Unaligned ( gi|35 ): ATAACTAAATTAAATCCCAACGAAAATTCACGATTTTACAGTAAA
Unaligned ( gi|36 ): ATTCATATAAGTGCAAAAATTTGTCGTGGATTTATTTTCGTT
Unaligned ( gi|37 ): GTAATCATTCAAATTTCTGTGGATCTTGATCCTAA
Alignments
lowQualScore : 22222
lowQualScore : 1 1 22 1 1 222 777 1 1 1 8888888 99999 1 1 666666 6666 2 2 333 77777 1 22 3 1 7777777 6666666 999999 7777 6666 22 2 55555 2
lowQualScore : . . .. . . ... ... . . . ....... ..... . . ...... .... . . ... ..... . .. . . ....... ....... ...... .... .... .. . ..... .
lowQualScore : 9 6 22 6 6 888 222 6 7 7 3333333 88888 7 7 111111 2222 0 0 777 66666 8 55 8 9 2222222 4444444 777777 4444 4444 99 4 99999 9
consensus : ATACTG-TAAAA-TCA--TTT-A-TTTTC---GT---GGG-T-T-TAA-------AA----TT-TCGTGG-TTT----T-GACTCT----AA-TAATGAATTCGTT-GA---CATTAA-TTTTCGTTGA-TTT--AT-AA-TTCAT---T---TATA------TA------TATT----CA---TTT--TAAG-TGC-AAC-AAA-ATTTGT
Reference ( family-766 ) : ATACTG-TAAAA-TCA--TTT-A-TTTTC---GT---GGG-T-T-TAA-------AA----TT-TCGTGG-TTT----T-GACTCT----AA-TAATGAATTCGTT-GA---CATTAA-TTTTCGTTGA-TTT--AT-AA-TTCAT---T---TATA------TA------TATT----CA---TTT--TAAG-TGC-AAC-AAA-ATTTGT
gi|1 : ACTG-TAAAA-TCA--TTT-A-TTTT----GT---GGG-CGT-TGA-------AA----TT-TCCTGG-TTT----A-AAAATA----AA-TAATGAATTTGCT-GA---CATTAT-CTTTCGTTGATTTT--AT-AATTTCA----G---TATA------TA------TATTTC--CA---TTT--TCAG-TGC-CAA-ACA-ATTTGT
gi|10 : tc-TAAAA-TCGGTTTC-A-TTTTC---GT---GAG-T-T-TAA-------AA----TT-TCG---------------CT-------A-TAATGAATTCGTT-GA---CATGAA-TTT--GTGGA-T-----T-AA-ATCATAA-T---TATA------CA------TA------AA---TTT--TAAATTGC-AAtgtggatatttattttgtagttttagaaatcaccaaaatgatgaaataaatccccacatatatatttttgactctaacagtattgaataccagtgtagaatagacatagttcatgcagaaattctcagt
gi|11 : acttttATACTG-TAAAA-TCA--TTC-A-TTTCT---GT---GAA-T-T-TAA-------A-----TG-TTATGG-GTT----T-GACTCT----AA-TAATGAATTCTTT-GA---CATTTA-TATTTGTTGA-TTT---T-AA-agttcgttgtggactatttttctgtttttaatttacccatgaacataagttaaacaaatcaccagcgataattta
gi|12 : ACTG-TAAAA-TTA--TCA-A-ATTTC---GT---GGC-T-T-TGA-------A-----TT-TCGTTG-TTT----T-GATTCT----AA-TAATGAATTCGTT-GA---CATTAA-TATTAGTTGA---T--AT-AA-Tgcgcaaaaattcacagtggatttatgctgttttatttacttttgaaagcaccaatttttgatcctcaacaaaaattaatgattttaca
gi|12 : ACTG-TACAA-TCA--TTA-A-TTTTC---GT---TGG-ataagcgtaaaaattcatcattgcctacaaaaaataaaaagaagaaaagaaatcaattccccaacgaaaattaatgattgtacagt
gi|13 : actgtaaaattatcaaatttcgtggctttgaatttcgttgttttgattctaataatgaattcgttgacattaatattagttgatataatataagcgtaaaaattcatcattgcctacaaaaaataaaaagaagaaaagaaatcaattccTACTG-TAAAA-TCA--TTT-A-TTTTT---GT---GAG-T-T-TAA-------AA----TT-TCGTTG-TTT----T-GAATCT----AA-CAGTGAATTCATT-GA---CATTCA-TTTTCGTTGA-TTT--TT-AA-TTCAT---T-------------TA------TATT----CA---TTT--TCAA-TGC-A---AAA-ATTT
gi|14 : actTTTCATTGA-TTT--AC-AA-TTCAT---T---TATA------TG------TATT----CA---TTT--CAAG-TGC---C-AAA-ATTTGTcccttagagaaaataactgctaaatttgcattgaagatgcata
gi|15 : AA-TCT--TTT-A-TTTTC---GT---GGA-T-T-TAA-------A-----TT-TTGCGG-TTT----T-CACTCT----GA-TAATCTATTTGTT-GA---CATTAATTTTTCGTTGA-TTTACAT-AT-TTCGT---------CG------TG------GATT----TA---TTT--Ttgttgatatattttcattgttttgatatgcccatgatttattttcattgtttttagatgcctatgaaaataattaaactaaatctccaacgaaaatttgtgattttacagtaaa
gi|16 : gTACTG-TAAAA-TCA--TTT-A-TTTTC---AT---AGG-T-T-TAA-------AA----TT-TCGTTG-TTG----A-GAATCA----AA-TAATGAATTCGTT-GG---CATTAA-TTTTCGTTGA-TTT--AA-AA-TGTAT---T---TTTA------TA------TATC----CA---TTT--TCAG-TG----C-AAA-ATTTGTcgttgttttacatgattattatatacccgtgcaaataaggaatta
gi|17 : atcACTG-CAAAA-TCC--TTT-A-TTTTT---GT---GG--T-T-TAA-------AT----TT-TTGTTG-TTT----T-GACTCT----AA-CAATGAATTCATT-GA---CA-CA------CATTGA-TTT--AT-CA-TTCAT---T---TATATACATGTA------TATT----CA----TT--TAAG-TGC-A---AAA-AGTTGTcgtggattta
gi|18 : ATACTG-TAAAA-TCA--TTT-A-TTTTT---GT---GGG-T-G-TAA-------AA----TT-TCGCGG-TTT----T-GAGTCT----AA-TAATGAATTTGTT-GA---CATTAA-TTTTCATTGA-TTT--AT-AA-TTCAT---T---TATG------TA------CATT----CA---TTT--TAGG-CCA-AAT-AAA-ATGTGTcttggatttatt
gi|19 : ATA------TA------TATT----CA---TTA--TAAG-TGC-AAC-A
gi|2 : aatgttcactaggttttccttgctattgccCTG-TAAAA-TCA--TTT-A-TTTTCTGCAT---GGG-C-T-GAA-------AA----TT-TCGTGG-TTTAATTT-GACTCT----AA-CAATGAATTTGTT-GA---CA--------TCG-------T--AT-A----CAT---T---TATT------TA------CATT----CA----TA--TAAG-TGC---T-AAA-GTTgttcattgtggaattattttcgtttttttttttcaacgaaaataatgaaattaaatccctattgaaaatc
gi|20 : TTCGTTGA-TTT--AT-AA-TTCAT---T---TATA------TATACGAGTATT----CA---TTT--TCAA-TGC-A---AAA-CTTCGTcattgtggatttattttcattgtttctacttatatacccacaaaaattacgaaattaacaaccctcttcccccccccaataattaatgattttaccatatatatgtatatatatccaaacagtaaaaattctcagt
gi|20 : CTG-TAAAA-TCA--TAA-A-TTTTC---GTCGGGGA-T-T-TAATTC----AATTATTT-CCGTGG-CTgggtttttcatttagccacggaaataattgaattaaatccccgacgaaaatttatgattttacag
gi|21 : ttcgttgatttataattcatttatatatacgagtattcattttcaatgcaaaacttcgtgggtttttcattt--AT-AA-TTCAA---T---TATA------TGATT---TATT----CA---TTT--TTAG-TGC-AA
gi|25 : tttaatcctata-TAAAA-TCA--TTT-A-TTTTC---GT---GGG-T-T-TAA-------AA----TT-TTGTGG-TTT----T-GACTCTA---AA-TAATGAATTCGTT-GA---CATCAA--TTTCACTGA-TTT--AC-AA-TTaacactcatcatggatttattttcgttgtttttatataccctcgaaaatactcaacaaaagttcatgattttat
gi|26 : acctTTGG-TTT--AT-AA-TTCAT---T---TATA------CA------TA-------A-----T--AAAG-TGC-A---AAA-ATT
gi|27 : TGCTG-TAATT-TAA--ATT-A-TTTTC---GT---GGA-T-T-TCA-------AA----TT-TCGAGG-TTT----T-GACTCT----AA-TAATGAATTCGTT-TA---CATTAA-TTTTCGTTGA-TTT--Aggcgtgtattttccgttttgatttacccacaaaaataatgaaattaaatcc
gi|28 : TACTGATAAAA-TCA--TTTTA-TTTTC---GT---GGG-T-T-TAA-------AC----TTGTTGTGG--------T-GACTCT----AATTAATTAATATGTT--A---CATTTA-ATTTCACTGA-
gi|29 : ATACTG-TAAAA-TCA--TTT-A-TTTTC---GT---GGG-T-T-TAA-------AA----TT-TTGTGG--TT----T-GACTCTATTAAA-TAATGAATTCGTT-
gi|3 : atAAA-TCC--TTT-A-TTTT----GT---GGT-T-T-TAA-------AAATT-TT-TCATGGGTTT----TAGAATCT----AA--AATGAATTCACT-GA---CAT--A-CATTCATTGA-TTT--AT-AA-TTCAT---TAAGTAT-------TA------TATT----CATATTTT--TAAG-TGC--GC--AA-ATTTGT
gi|32 : AA-TCA--TTC-A-TTTTC---GTTGGGGA-T-T-TAATTTCATTAC----TT-TCGTGG-tgtgtatttatttcactgtatgttatttacacatgaaaaataacaaaattaaatccccaacgaaaatcttgcatcatttaca
gi|33 : gtatttatACTG-TAGAA-TCA--TTA-A-TTTTC---GT---GGGAT-T-TTG-------AT----TT-TCGTTG-TTT----T-
gi|34 : TACTG-TAAAA---A--TTT-A-TTTTT---GT---GGG-T-T-TGA-------AA----TT-TCGTTG-TTT----catg
gi|4 : acagTG-TAAAA-TCA--TTT-A-TATTT---GT---GGG-T-T-AAA-------AA----TT-TCTTGG-TTT----C-GAATCC----AA-AAATAAATTTGTT-GA---TA-TA---------------T--AT-A--------------TATA------TA------TATT----CA---TTT--
gi|5 : ACTG-TAAAAATCA--TTT-AATTTCC---GT---GGG-T-TCTAA-------A-----------TGG-TTT----CCGACTCT----AA-TAAT-AATTCGTTTAA---CAT-GA-TTTTTGTTGG-TTT--AT-AA-TCAAT---T---TATA------TA------CAT------A---ATTAATAGT-TGC-A---AAA-ATTcctggaccagtaacaaaaatcattggtgtatttatcgtgttttgatctacccacaaaaattacgcattttaatatccccccccccccccccacccaatgtgtgattttgacagagtgtgt
gi|7 : G-TAAAA-TCA--ATT-A-TTTTC---GT---GGG-T-T-TAA-------AA----TT-CCGTGA-TTT------GAAACT----AA-TAATGAATTGGTT-TA---CATATA-TTTTCGTTGA--TA--ATAAA-TTCAT---T---CATA------TA------TATT----CA---TCA--TAAG-TGTAAAC-AAT-GTTTggcgtgtattttccgttttgatttaccgcacaaataataaatgaaattgaacatccccaacaaaaattcatgattttacagtaa
gi|8 : CTG-TAAAA-TCA--TTT-----TTC---ATT--GGG-T-T-TAA-------AA----TT---ATAA-TTT----T-GACCAT----AA-TAATGTATTCATT-GATCACATTAA-TTT-CTTTGA-TTT--AT-A--TCTAT---T---TATA------TG------TATT----CA---TTT--TAAG-TG---ACAAAA-ATTTGTactaaacattctggtggattcatttttgtttttatttattgacgaaaatcacaaaatgaaatcccgggcg
gi|9 : AAAA-TCA--ATT-A-TTTTC---AT---GGC-T-T-ACA-------AA----TT-TCATG---TT----T-AACTCT----AA--AATGAAT-------A------------TTCGTTGA-TTT--ATCAA-CT-ATTGAT---TAT-------TA------TATTATGGCA----CT--TAAG-TGC---C-AAACATTCGTtgggatttattttctatgagtcaagtaaataacaaaattaaatccccacaaagattcatgattttacagt
9 sequences could not be aligned to this reference sequence:
Unaligned ( gi|6 ): AAAGATTCATTTGATTTTCATGATTTTAAAATTCATGGTTTTGAATTTACTTTGATTCATTATTCATGATATTATTGAATCATTTAAATTCATATATTTACATTCTCAAAGCAAAAATCTGTTGTGACCTTATTTTGTGTTTTTTATTTAGCCCACAAAAAATAATGAAATTCAAATCCCCATTGAAAATTTTGATTTTTAC
Unaligned ( gi|22 ): TGATATATATTATTTTAAGTGCCAAACAATTCGTTGTGATTTGTCGTTTTTTACCATGAGAAATAACGAAGATTCCATCCTCAATGAAAATTGACTGATTTTACA
Unaligned ( gi|23 ): TCAGTGAAAATATTCGTCGTGGATTTATGTTATTATTTTTTTTTACTTACAAAAATAGCAAAATTAAATCCCCGATGAAAATCTATATTTTTTTTACAGTAC
Unaligned ( gi|24 ): ATTCACTTCCAGTGCAAAAATTCAACGTAGATTTCTTTTCGTCGTTTTTATTTACCCAAGAAAATAACAAAGCTAAATCCCCAATGAAAATTCATGATT
Unaligned ( gi|30 ): AAAGTCAGAATTTCATTTTTGAGAGTCTATTTTCAAATGATGTTGTGCAACCAAATGTCAATACGTAGATA
Unaligned ( gi|31 ): TTATTACCCATGAAAATAACAAAATTAAATCCCCAACAAAAATTTTTGATTTTACAGTA
Unaligned ( gi|35 ): ATAACTAAATTAAATCCCAACGAAAATTCACGATTTTACAGTAAA
Unaligned ( gi|36 ): ATTCATATAAGTGCAAAAATTTGTCGTGGATTTATTTTCGTT
Unaligned ( gi|37 ): GTAATCATTCAAATTTCTGTGGATCTTGATCCTAA