lowQualScore : 111111111111111111111111111111111111111111111111111 2222222222222222222222222
lowQualScore : 222 1 44444444444 222 22 222 2222222 111111 33 22222 999999999999999999999999999999999999999999999999999 11111 11111 1 1 111 222222222 1 6666666666666666666666666 1 22 22 1111 333333333333 1 11111 2222222222222 55555 1111 1 11111 111
lowQualScore : 6 4 111 5 55555555555 3 6 5 4 9999 888 555 3 7777 3 55 00 0 333 1 6666666 111111 3 7777 3 3 3 77 3 8888 9999 4 55 4 11111 66 222222222222222222222222222222222222222222222222222 66666 22222 1 5 7 99 111 3 222222222 1 0 1111111111111111111111111 1 6 6 66 11 2222 5 5 9 999999999999 1 4 5 9 888 1 77777 5 7 5 8 66 777 6666666666666 8 66666 9999 66 5 888 8 7777 22222 3 333 666
lowQualScore : . . ... . ........... . . . . .... ... ... . .... . .. .. . ... . ....... ...... . .... . . . .. . .... .... . .. . ..... .. ................................................... ..... ..... . . . .. ... . ......... . . ......................... . . . .. .. .... . . . ............ . . . . ... . ..... . . . . .. ... ............. . ..... .... .. . ... . .... ..... . ... ...
lowQualScore : 0 6 222 2 11111111111 1 7 7 9 6666 444 111 3 1111 6 55 99 5 999 4 8888888 888888 6 7777 6 6 6 77 6 5555 4444 4 66 4 77777 11 222222222222222222222222222222222222222222222222222 77777 77777 7 0 0 88 777 7 888888888 5 2 2222222222222222222222222 7 7 0 77 33 0000 0 0 2 555555555555 4 1 0 5 888 4 44444 0 1 7 2 99 222 6666666666666 2 55555 0000 99 0 888 1 7777 44444 6 555 444
consensus : TATACTGAGCAAAAAAAGTTTAGCAACATTTT---TTTTTN-ACCTC-TTGAAAATATTTCA-CAATTGTAAAAA----TT--CAAAAAA--TC-TAAACATGCATG----TC-TTACACTGTGTTTC-AAACT-TAATTTTCATTGATAAATG--ACATCTTAA---T---TTT------TCAGT-ATAACCA----AAGGA-CGTTTTCG-CAAAA-TTGAAGTTT-GAAAAT-TC----CAATGG----AATAACT-CTC-CAT-AG----GAAA--A-------A--------TTCGCNAAAAA--------G---------------AA-----TA---AACAACATTTTTGGTATCCCCAGTTAGCAACTTCCACTCATCAAACGAGA-TTTTTTGG---CAAAAATTAGCAATGAATAGGAAAACACACATT-----------TTTGT--------TGAAAAACTCCCCT-TTTCACTCTTTCCTTTTCGGGCTCA--T-T-TTT-TATGCCAGAAA--AGAAAGG-CAACAGG-AAAAACAAT---CCTTCGTTTTAAA-GTT-TATGGTTGTTTT-AAACGAAAATC--GTTATCAAAA--TCATTC-TAAGAG-T---GATAAATATG-TTAACAT---TTTGCC--TCTGAAAAGCGTA-TAT---AATTTTTCAACCTTTTGTTGC----TAAA--C--TT-TT--TT---ACTCAGT
Reference ( gi|2 ) : TGTACTAAGCAAAAAATGTTTAGAAACATTTT--ATTTTTT-ACCTC-TTGAAGATATTTCA-CAATTGTGAAAA----TT--CAAAAAC--TC-TAAACATGCATG----TC-TTACACTGTGTTTT-AAACT-GAATTTTCATTGATAAATG--TCATCTTAA---T---TTT------TCAGT-ATAACCA----AAGGA-CGTTTTCG-CAAAA-TTGAAGTTT-AAAAAT-TC----CAATGG----AATAACT-CTCATAT-AG----CAAA--A-------A--------CTCG---------------G---------------AA-----TA---AGCAACATTTTTGGTATCCCAAGTAAGCAACTTCCACTCATCAAACGAGA-TTTTTTGG---CAAAAAATAGCATTCAATAGGAAAACACAAATTTTATTTATTTATTTGTTTATTTTTTGAAGAACTCCCTT-TCTCACTCTTTGATTTTCTAGCTCA--T-T-TTT-TATGCCAGAAA--AGAAAGA-CAACAAG-ATAAACAAT---CCTTCGTTTTAAC-GTT-TACGGTTGTTTT-AAACGAAAGTC--GTTATCAAAA--TCATTG-TAACAG-G---GATAAGTATGTTTTTCAT---CTTGCC--TCTGAAAAGCGTA-TAT---AATTTTTCAACCGTTTGTTGC----TAAA--C--TT-TC--TT---ACTCAGT
gi|9 : TATACTAAGCAAAACAAATTTAGCAACATTTT-----TATG-ATCTT-TTGAAAATATTTCA-CAATTGTAAAAA----T---CAAAAAA--TC-TAAACATGCATGCATGTC-TT-CACTGTGTTTC-AAATTTGA--TTTCTTTGATAAATG--ACATCTTAA---T---TTT------TTCGTTATAACCA----AAGGA-CGTTTTGG-CAAAA--CGAAGTTTGAAAAAT-TC----TTATGG----TTTACCT-CTC-CAT-AG----GAAA--AAAATTTCA--------TTCGCAAAAAA--------A---------------AA-----TA---AACAATATTTTCGG
gi|16 : aTATACTGAGTAAA----GTTTAGCAACATTTT-------TA-AACTC-TTCAAAATATTTAA-GAATTGTAAACA----TT--CAAAAAA--TCTTAAATATGCCTG----T
gi|4 : aTAGTGAGCAAGAA-CGTTTAGCAACATTT---ATG-----ACCTC-TTGAAAAGATTTCA-CAATTGTAAAAA----TT---AAAAAC--AT-TAAACATGCATG----TC-TTACATTGTGTTTC-AAACT-TAATTGTCATTGATAAATG--ACAT-TTAA----------AAAAAATCAGT-ATGACCA----AAGGA-CGTTTTTTTCAAAA-CTGAAGTTT-GAAAAT-TT----CAGTGG----AATAACT-CTCA-AT-AG----GAAA--A-------AAAAAATCATTCGCAAAAAAT-------G---------------AA-----TA---AACAACATTTT-GGTATCCCCAGTTAGCAACTTCTACTCATCAAACGAGA-GTTTTTGC---CAAAAATTAGGAGT-GATAAGAAAACACACATTTC-----------TGT---------GAAAAACTTCCCT-TTTCACTCTTTCATTTTCGGGCTCA--T-T-TTT-TATGCTAGA------TAAGG-CAACAGG-AAAAACAAT---CCTTCGTTTTAAA-GTT-TATGGTTG-TGT-AAATCAA-----------CAAA-----ATTC-TAAGAG-T---GATAAATATG-TTAACAT---TTTGCC--TTTGAAAAGAGTT-TAT---AATTTTTCAAACTTTGGTTGC----TAAA--C--TT-TT--TTTTCACTCA
gi|10 : TGCTGAGCAAAAAAGGTTTAGCAACAT-----ATTTTG--ACCTC-TTGAAAATATTTCA-TAATTGCAAAAAA---TT--TAAAGA---TC-TAAACGTGCGTG----TC-TTACACTGTGTTTT-AAACT-TAATTTTCATTGATAAATGACACATCTTAATT-T---TTT------TCGAT-ATAACCG----AAGGA-CGTTTTCG-CAAAA-TTAAAGGTT-GAAAAT-TCTGGACAATGG----AACAACT-CTCA-AT-AG----GAAA--A-------A--------t
gi|11 : aTACTGAGTAAATTAAGTTGAACAACATTTTTCATTTTTTTATCAC-TTCAAAATATTTCA-CAATTCTAAAAG----TT--CAAAAAA--TC-TAAACATGCATG----TC-TTACATTGTGTTTC-AAAC-----TTTCCATTCATAGATG--ACATCTTAA---TTTATTT------TCAGT-ATAAGCA----AATGA-CGTTTTCG-CAAAA-TTAAAGTTT-GAAAAT-aatcat
gi|13 : tataaTACTGAGTAAAAAAAGTTT--------------TTTTTT-AACTCCTTGAAAATATTTCATCAATTGTAAAAAAAAATT--AAAAAA---TC-TAAACATGCATG----TCTTTACACTGTGTTTC-AAACT--CATTTTCATTAATAAATA---CATCTTAATT-T---TTT------TCAGT-ATAACCAATTTAAAGATCG-TTTCG-CAAAATTTGAAGATG-AGAAAT-TC----CAATGagtatatcttatgttcatatccgcgaaa
gi|7 : ataatACTGAGTAAAAA--GTTTAGCAACATTTT-----TATG-ACCTC-TTGAAAATATTTCC-CAATTATAAAAA----TT--CAAAAA---TC-TAAACATGCATG----TC-TTACACTGT--TTT-AAACT-TAATTTTCATTCATAAATG--ACATCTTAA---T---TTTT-----TCAGT-ATAACAA----ATGGA-CGTTTTCG-CAAAA-TTGAAGATT-CAAAAT-TG----CAATGG----AATAACT-CTC-CAT-AGGAAACAAA--ATTTC---A--------TTCG---------------C---------------AAAAAATTAATTAACAACATTTTTGGTATCCCCAGTTAGCAACTTCTACTCATCAAACGAGATTTTTTTGG---CAAAAATTAGCAATGAAAAGGAAAACCCAata
gi|3 : CTGAGCCAAAAAAGTTTTGCAACATTTT-------TG-ACCTC-TTGAAAATATTTCA-CAAATGTAAAAA----TT--CGAAACA--TC-TAAGCTTGCATG----TC-TTACACAGTGTTTC-AAACT-TAATTTTCATTGATAAATG--GCATATAGA---TA--TTT------TCAGC-ATGTCC-----AAGGA-CGTTTTCG-CAAAG-TTGAAGTTT-GAAAAT-TC----GAATGG----AATAACT-CTC-CAT-AG----GAAG--AAAATT--A--------TTCGCCAAAAAAT------G---------------AA-----TA---AATAATATTTTTCGTATCCCCAGTTAGCAACTTCCACTCATCAAACAATA--TTTTTGG---CAAATATTAGCAATGAATAGAAAAACAC--ATT-----------TTTG---------TGAAAAATTTCCTT-TTTCACTTTCTCCTTATCGGGCGCA-------TT-TAT-----AAACCAGAAAGA-CAAGAGG-ATAAACAAT---CTTTCGTTTTA----TT-TATGGTTCTTTT-AAACAAAAATC--GTTATCAAAT--TAATTT-TAAGAC-T---GATAAATATG-TTAACAT---TTTGCC--TCTGAAAAGCGTA-TAT---AATTTTTCAACCTTTTATTGC----TTAA--CT-TT-TT--TT---ACTTAGTcc
gi|12 : CTGAGTAAAAGAAGTTTAGCAACATTTT-----TTTT-ACCTC-TTGAAACTATTTCA-CAATTGTAAATA----TTAACAAAAA----A-TAAAGATGCATG----TC-TTACTCTGTGTTTC-AAACT-TAATTTTCATTCATAAATG--ATATCTTGA---T---TTT------TCAGT-ATAATCA----AAGGA-CGTTTTCG-CAAAA-TTGAAGTTT-GAAAAT-TC----CAATGG----ATTAACT-CTC-CAT-AG----GAAAGCA-------A--------TTCa
gi|6 : TGAGCAAAC----TTTAGCGACTTTTT---TTTTTT-AC-TC-TTTAATATATTTTAGCAATTGTAAAAA----TC-----AAAT--TG-TAAACATGCATG----TG-TTA-ACTG-GTTTTCAAACT----TTTTCATTGA-AAATG--ACAT-TTAGTT-T---TTT------TC-GT-ATAA-AA----AAGGA---TTTCCG-AAAGA-TT-AAGTTT-GAAAATCTC----CAATGA----AGC--CT-CGC-CAT-AG----GAAA--A-------A--------cattc
gi|18 : atatctTGAGCAAAAAAAGTTAAGCAGCATTTG-----TTTG-ACCTC-CTGAAAATATTTTA-CAAT--TGAAAA----attttcttcccaaaatggcaatgaaataggaacacactttttgtgaaaactcccttctttcacttcttttttcgggctcttttttgctgataaaaggcactaagaaaatagtaaacttttgtttacagttgtaaggttgtttttaaacgaaaattgttatgagaatcattctactaagaatgataaatgcgttaacatttgcctttttgaaatgcgtgtatatgtttcaactttgttgcttgttaaacttttttactagtcat
gi|19 : AAAAAAAGTTTAGCAACATTTT---TTTTTT-ATCTC-TTGAAAATATTTCA-CAATTGTAAAa
gi|1 : AAAAA-GTTTATTAACATTTT----CTTTA-ATCCC-TTGAAAACATTTGA-CAATTGTAAGAA----AT--AAAAAAAAATG-TGAACATGCATG----TC-ATACACTGTGTTTC-AAACT-TGATTTTCATTGATAAATG--ATATCCTAA---T---TTT------TCAGT-ATAATCA----AAAAA-TGTTTTCG-CAAAA-TTGAAGTTT-GAAAAT-TC----CAATGGTCCTAA-AACT-CTC-CAT-AG----GAAA--A-------AA-------CTCATTC------------GCAAAAAAAACAAATTAA-----TA---CACAGCATTGTTGGTATCCCCAGTTAGCAACTTACACTCATAAAACGAGA-TTTTTGGGGGGCAAAAAG-AGCAATGAATAGAAAAA---AAAT---AC--ATTT--TTGTTAA------AAAAAACTCCCCT-TTTTACGCTTTTCTTTTTGGGCTCAGTT-T-TTT-CATACCAGAAA--AGG-----CAACAGG-AAACACAAT---CCTTCGTTTTAAA-GTG-TATGGCTGTTTT-AAACGAAACCC--GTTATCAAAA--TCATTC-TACGAG-T---GATAAAAATG-TTAACAT---TTTGCT--TGTAAAAAGCGCA-TAT---AATTTTTCAACCTTTTGTTGC----TGAA--C--TT-TT--TT---
gi|5 : tacatgtactgttttttTTTCA-CAATTCTAAAAG----TT--CAAAATA--TC-TAAACATGCATG----TT-TTATACTGTGTTTC-AAGCT-TAATTTTCATTCATAGATG--ACATCTTAATTTT---TTT------TCAGT-ATAACCA----AAGGA-CGTTTTCG-CAAAA-TTAAAGCTT-GAAAAT-TT----CAATGG----AATAACTATTCATACGAA----AAAA--A-------A--------ATCATTCACAAAAAAAAATG---------------AA-----TA---AACAACATTTTTGGTATCCCCAATTAATGTCTTCCACTCATCAAACGAAA-TGTTTTGG---CAA----------TCGATAGGAAAACGCACATT-----------TTTG---------TGAAAA--TCTTTT-TTTCACCCTATTCTTTTCAGGCTCA--T-TATTT-TATGCC-------AAAAAGG-CTACAGG-AAAGGCAAT---CTTTCGTATTAAA-GTT-CATGGTTGTTTT-CAACGAAAATC--GTTATTATGA--TTATTT-CAAGAG-T---GATAAATATGTGAACTAT---TTTGCC--TCTGAAAAGCGTA-TAC---GATTTTTCAACCTTTTGTTGC----TAAAGTT--TT-TCTTTT---ACTCAGTttta
gi|8 : acTCAAACAAGA-TTTTTTGG---GAAATATTAGCAATGAATAGGAAAACACACATT-----------TTTG--------TTGAAAAACTCTCCT-TTTCACTTTTGGAat
gi|6 : tttagtgtgaccccaatattttcgtatccttTTTTGTGAA-AACTCCCTTCTTTCACTTCTT--TTTTCGGGCTC-----T-TTT-T-TGCT-GATA--A--AAGG-CACTAAG-A-AAATAGTAAACTTTTGTTT--ACAGTTGTAAGGTTGTTTTTAAACGAAAATT--GTTATGAGAA--TCATTC-TACTAA-GAATGATAAATGCG-TTAACAT----TTGCCTTTTTGAAATGCGTG-TAT----ATGTTTCAAC--TTTGTTGCTTGTTAAA--C--TT-TT--TT---ACT-AGTaagggggggggggggggggggcatttttttatgccagaaaaatcaacaggaaaagtttatggttgttttacaccaaaatcgttatcaatatcattctatgagtgataaatatgttaacattttgcctctgaaagcatatatataaatttttcagccctttgttgctaaaccttttttactcagtatacc
gi|14 : atatcttgagcaaactttagcgactttttttttttactctttaatatattttagcaattgtaaaaatcaaattgtaaacatgcatgtgttaactggttttcaaactttttcattgaaaatgacatttagtttttttcgtataaaaaaggatttccgaaagattaagtttgaaaatctccaatgaagcctcgccataggaaaaaattttcttcccaaaatggcaatgaaataggaacacactTCCTT--TTTTCGGGCTCA--T-T-TTTCTATGCCCGAAA--AGA-----CAAAAGG-GAAAACCAT---CCTTAGTTTTTAA-GTT-GATGATTGTTTT-AAGCGAAAATC--GCTATCAAAA--TCATTC-TAAGAGTG---AATATGCATA---AACAT---TTTGCT--TCTGAAAAGCGCA-TGT---AATTTTTTAACCTTTTGGTGC----TAAA--CG-TT-TT--TT---ACTTAcat
gi|17 : TTTTCGGGCTCA--TAT-TTC-TATGCCAGAAA--AGA-----CAAAAGGGAAAAACAAT---CCTTAGTTTTAAA-GTT-GATGGTTagtaagtc
gi|8 : --T-T-TTT-TATGCCAGAAA--A-----ATCAACAGG-A-AAA---------------------GTT-TATGGTTGTTTT-ACACCAAAATC--GTTATCAATA--TCATTC-TATGAG-T---GATAAATATG-TTAACAT---TTTGCC--TCTG-AAAGCATA-TATATAAATTTTTCAGCCCTTTGTTGC----TAAAC-C--TT-TT--TT---ACTCAGT
gi|15 : tttagtgtgaccccaatattttcgtatcctttcaaacaagattttttgggaaatattagcaatgaataggaaaacacacatttttgttgaaaaactctccttttcacttttggaaagggggggggggggggggggcatAAAATCCGGTCATCAAAAAATCATTTCTAAGAG-T---GATAA-TATGCTATATATATTTTTGCC--TCTGAAAAGCGTATTAT---A----TTTAACC-TTTGTTGC----TAAA--CTTTT-TT--TT---ACTCAatacc
gi|7 : TGTTGC----TAAA--C--TT-T---TT---ACTCAGTag
gi|12 : TGTTGC----TAAA--C--TTCTT--TT---ACTCAGtttttatgacctcttgaaaatatttcccaattataaaaattcaaaaatctaaacatgcatgtcttacactgttttaaacttaattttcattcataaatgacatcttaattttttcagtataacaaatggacgttttcgcaaaattgaagattcaaaattgcaatggaataactctccataggaaacaaaatttcattcgcaaaaaattaattaacaacatttttggtatccccagttagcaacttctactcatcaaacgagatttttttggcaaaaattagcaatgaaaaggaaaacccacc
gi|16 : TGTTGC----TAAA--C--T------TT---ACTCAGTttttttttacctcttgaaactatttcacaattgtaaatattaacaaaaaataaagatgcatgtcttactctgtgtttcaaacttaattttcattcataaatgatatcttgatttttcagtataatcaaaggacgttttcgcaaaattgaagtttgaaaattccaatggattaactctccataggaaagcaattccattc
Alignments
lowQualScore : 333333333 2222222222 7777777777777777777 1111 4444444444444 22222222222 3333333333 11 333333333333333333 444444444 111 11 11
lowQualScore : 333 2 111111111 5 6666 777 44 3 6666 3 11 44 0 6666666666 3 555 7777 3 3 3 3 3 7777 8888 4 6666666666666666666 2 0000 0000000000000 66 55 888 0 66 5 0 5 77777777777 0000000000 77 5 2 88 222222222222222222 9999 4 4 4 1 000000000 0 4 66 0 1 4 5 66 66 0 222 00 777 4 4 66 4 777 0 4 4 4 55 9999 777 0
lowQualScore : ... . ......... . .... ... .. . .... . .. .. . .......... . ... .... . . . . . .... .... . ................... . .... ............. .. .. ... . .. . . . ........... .......... .. . . .. .................. .... . . . . ......... . . .. . . . . .. .. . ... .. ... . . .. . ... . . . . .. .... ... .
lowQualScore : 111 9 333333333 3 1111 000 22 1 5555 3 99 66 4 8888888888 3 888 1111 3 3 3 3 3 7777 5555 0 5555555555555555555 8 6666 8888888888888 99 11 888 5 55 0 1 0 11111111111 7777777777 99 7 0 44 888888888888888888 7777 4 4 4 8 777777777 1 4 11 1 8 4 0 11 11 1 222 66 888 4 4 11 4 888 8 4 4 4 00 4444 888 2
consensus : TATACTGAGCAAAAAAAGTTTAGCAACATTTT-T----TTT-GACCTCTTGAAAATATTTCA-CAATTGTAAAAA----TT--CAAAAAA--TC-TAAACATGCATG----TC-TTACACTGTGTTTCAAACTTAATTTTCATTGATAAATG--ACATCTTAA------T---TTT-T---CAGTATAACCA----AAGGA-CGTTTTCG-CAAAA-TTGAAGTTTG-AAAAT-TC----CAATGG----AATAACTCTC-CATAGGAAA--A-------AA-------TTCGCAAAA----AA----GA-------ATA--AACAACATTTTTGGTATCCCCAGTTAGCAACTTCCACTCATCAAACGAGA-TTTTTTGG---CAAAAATTAGCAATGAA-TAGGAAAACA-CACATT-----------TTTG--------TTGAAAAA--CTCCCCT-TTTCACTCTTTCCTTTTCG------------------GGCTCA--T-T-TTT-T-ATGCCAGAAA--AGA--GGCAACAGG-AAAA--ACAATCCTTCGTTTTAAAGTT-TATGGTTGTTTT-AAACGAAAATC--GTTATCAAAA--TCATT---CTAAGAGTGATAAATATG--TTA---AC-ATTTT-GCC--TCTGAAAAGCGTA-TAT---AATTTTTCAACCTT-TTG-TTGCTAAA-C--TT----TTTT---ACTCAGT
Reference ( family-7623 ) : TATACTGAGCAAAAAAAGTTTAGCAACATTTT-T----TTTTNACCTCTTGAAAATATTTCA-CAATTGTAAAAA----TT--CAAAAAA--TC-TAAACATGCATG----TC-TTACACTGTGTTTCAAACTTAATTTTCATTGATAAATG--ACATCTTAA------T---TTT-T---CAGTATAACCA----AAGGA-CGTTTTCG-CAAAA-TTGAAGTTTG-AAAAT-TC----CAATGG----AATAACTCTC-CATAGGAAA--A-------A--------TTCGCNAAA----AA----GA-------ATA--AACAACATTTTTGGTATCCCCAGTTAGCAACTTCCACTCATCAAACGAGA-TTTTTTGG---CAAAAATTAGCAATGAA-TAGGAAAACA-CACATT-----------TTTG--------TTGAAAAA--CTCCCCT-TTTCACTCTTTCCTTTTCG------------------GGCTCA--T-T-TTT-T-ATGCCAGAAA--AGAAAGGCAACAGG-AAAA--ACAATCCTTCGTTTTAAAGTT-TATGGTTGTTTT-AAACGAAAATC--GTTATCAAAA--TCATT---CTAAGAGTGATAAATATG--TTA---AC-ATTTT-GCC--TCTGAAAAGCGTA-TAT---AATTTTTCAACCTT-TTG-TTGCTAAA-C--TT----TTTT---ACTCAGT
gi|1 : AAAAAGTTTATTAACATTTT-C----TTT-AATCCCTTGAAAACATTTGA-CAATTGTAAGAA----AT--AAAAAAAAATG-TGAACATGCATG----TC-ATACACTGTGTTTCAAACTTGATTTTCATTGATAAATG--ATATCCTAA------T---TTT-T---CAGTATAATCA----AAAAA-TGTTTTCG-CAAAA-TTGAAGTTTG-AAAAT-TC----CAATGGTCCTAA-AACTCTC-CATAGGAAA--A-------AACTCA---TTCGCAAAA----AA----AACAAATTAATA--CACAGCATTGTTGGTATCCCCAGTTAGCAACTTACACTCATAAAACGAGA-TTTTTGGGGGGCAAAAAG-AGCAATGAA-TAGAAAAAAAATACATT-----------TTTG--------TTAAAAAAAACTCCCCT-TTTTACGCTTTTCTTTTTG------------------GGCTCAGTT-T-TTT-C-ATACCAGAAA--AG----GCAACAGG-AAAC--ACAATCCTTCGTTTTAAAGTG-TATGGCTGTTTT-AAACGAAACCC--GTTATCAAAA--TCATT---CTACGAGTGATAAAAATG--TTA---AC-ATTTT-GCT--TGTAAAAAGCGCA-TAT---AATTTTTCAACCTT-TTG-TTGCTGAA-C--TT----TTTT---
gi|10 : tacatgtactgttttttATGCTGAGCAAAAAAGGTTTAGCAACATATT-T----T---GACCTCTTGAAAATATTTCA-TAATTGCAAAAA----AT--TTAAAGA--TC-TAAACGTGCGTG----TC-TTACACTGTGTTTTAAACTTAATTTTCATTGATAAATGACACATCTTAATT----T---TTT-T---CGATATAACCG----AAGGA-CGTTTTCG-CAAAA-TTAAAGGTTG-AAAAT-TCTGGACAATGG----AACAACTCTC-AATAGGAAA--A-------A--------ttta
gi|11 : ATACTGAGTAAATTAAGTTGAACAACATTTT-TCATTTTTTTATCACTTCAAAATATTTCA-CAATTCTAAAAG----TT--CAAAAAA--TC-TAAACATGCATG----TC-TTACATTGTGTTTCAAAC----TTTCCATTCATAGATG--ACATCTTAA------TTTATTT-T---CAGTATAAGCA----AATGA-CGTTTTCG-CAAAA-TTAAAGTTTG-AAAAT-aatcat
gi|12 : tataCTGAGTAAAAGAAGTTTAGCAACATTTT-T----TTT--ACCTCTTGAAACTATTTCA-CAATTGTAAATA----TTAACAAAAAA-----TAAAGATGCATG----TC-TTACTCTGTGTTTCAAACTTAATTTTCATTCATAAATG--ATATCTTGA------T---TTT-T---CAGTATAATCA----AAGGA-CGTTTTCG-CAAAA-TTGAAGTTTG-AAAAT-TC----CAATGG----ATTAACTCTC-CATAGGAAAGCA-------A--------TTCagtatatcttatgttcatatccgcgaaa
gi|13 : TACTGAGTAAAAAAAGTTT----------T-T----TTTTAACTCCTTGAAAATATTTCATCAATTGTAAAAAAAAATT---AAAAAA--TC-TAAACATGCATG----TCTTTACACTGTGTTTCAAACTC-ATTTTCATTAATAAAT---ACATCTTAATT----T---TTT-T---CAGTATAACCAATTTAAAGATCG-TTTCG-CAAAATTTGAAGATGA-GAAAT-TC----CAATGcattc
gi|14 : ataatTCCTT--TTTTCG------------------GGCTCA--T-T-TTTCT-ATGCCCGAAA--AGA----CAAAAGG-GAAA--ACCATCCTTAGTTTTTAAGTT-GATGATTGTTTT-AAGCGAAAATC--GCTATCAAAA--TCATT---CTAAGAGTG---AATATGCATAA---AC-ATTTT-GCT--TCTGAAAAGCGCA-TGT---AATTTTTTAACCTT-TTG-GTGCTAAA-CG-TT----TTTT---ACTTAata
gi|15 : AAAATCCGGTCATCAAAAAATCATTT--CTAAGAGTGATAA-TATG--CTATATAT-ATTTTTGCC--TCTGAAAAGCGTATTAT---A----TTTAACC-T-TTG-TTGCTAAA-CTTTT----TTTT---ACTCAagtaagtc
gi|16 : TATACTGAGTAAA----GTTTAGCAACATTTT-T--------AAACTCTTCAAAATATTTAA-GAATTGTAAACA----TT--CAAAAAA--TCTTAAATATGCCTG----Tag
gi|17 : aTTTTCG------------------GGCTCA--TAT-TTC-T-ATGCCAGAAA--AGA----CAAAAGGGAAAA--ACAATCCTTAGTTTTAAAGTT-GATGGTT
gi|18 : TGAGCAAAAAAAGTTAAGCAGCATTTG-T----TT--GACCTCCTGAAAATATTTTA-CAATTG-AAAAA----
gi|19 : AAAAAAAGTTTAGCAACATTTT-T----TTTTTATCTCTTGAAAATATTTCA-CAATTGTAAA
gi|2 : TGTACTAAGCAAAAAATGTTTAGAAACATTTTAT----TTTTTACCTCTTGAAGATATTTCA-CAATTGTGAAAA----TT--CAAAAAC--TC-TAAACATGCATG----TC-TTACACTGTGTTTTAAACTGAATTTTCATTGATAAATG--TCATCTTAA------T---TTT-T---CAGTATAACCA----AAGGA-CGTTTTCG-CAAAA-TTGAAGTTTA-AAAAT-TC----CAATGG----AATAACTCTCATATAGCAAA--A-------A--------CTCG---------------GA-------ATA--AGCAACATTTTTGGTATCCCAAGTAAGCAACTTCCACTCATCAAACGAGA-TTTTTTGG---CAAAAAATAGCATTCAA-TAGGAAAACA-CAAATTTTATTTATTTATTTGTTTATTTTTTGAAGAA--CTCCCTT-TCTCACTCTTTGATTTTCT------------------AGCTCA--T-T-TTT-T-ATGCCAGAAA--AGAAAGACAACAAG-ATAA--ACAATCCTTCGTTTTAACGTT-TACGGTTGTTTT-AAACGAAAGTC--GTTATCAAAA--TCATT---GTAACAGGGATAAGTATGT-TTT---TC-ATCTT-GCC--TCTGAAAAGCGTA-TAT---AATTTTTCAACCGT-TTG-TTGCTAAA-C--TT----TCTT---ACTCAGT
gi|3 : CTGAGCCAAAAAAGTTTTGCAACATTTT-T--------GACCTCTTGAAAATATTTCA-CAAATGTAAAAA----TT--CGAAACA--TC-TAAGCTTGCATG----TC-TTACACAGTGTTTCAAACTTAATTTTCATTGATAAATG--GCATATAGA------TA--TTT-T---CAGCATGTCC-----AAGGA-CGTTTTCG-CAAAG-TTGAAGTTTG-AAAAT-TC----GAATGG----AATAACTCTC-CATAGGAAG--AAAATT--A--------TTCGCCAAA----AAAT--GA-------ATA--AATAATATTTTTCGTATCCCCAGTTAGCAACTTCCACTCATCAAACAATA--TTTTTGG---CAAATATTAGCAATGAA-TAGAAAA--A-CACATT-----------TTTG---------TGAAAAA--TTTCCTT-TTTCACTTTCTCCTTATCG------------------GGCGCA-------TT-T-AT-----AAACCAGAAAGACAAGAGG-ATAA--ACAATCTTTCGTTTTA---TT-TATGGTTCTTTT-AAACAAAAATC--GTTATCAAAT--TAATT---TTAAGACTGATAAATATG--TTA---AC-ATTTT-GCC--TCTGAAAAGCGTA-TAT---AATTTTTCAACCTT-TTA-TTGCTTAA-CT-TT----TTTT---ACTTAGT
gi|4 : TAGTGAGCAAGAAC-GTTTAGCAACATTTA-T--------GACCTCTTGAAAAGATTTCA-CAATTGTAAAAA----TT--AAAAACA--T--TAAACATGCATG----TC-TTACATTGTGTTTCAAACTTAATTGTCATTGATAAATG--ACAT-TTAAAAAAAAT-----------CAGTATGACCA----AAGGA-CGTTTTTTTCAAAA-CTGAAGTTTG-AAAAT-TT----CAGTGG----AATAACTCTC-AATAGGAAA--A-------AAAAAATCATTCGCAAAA----AAT---GA-------ATA--AACAACATTTT-GGTATCCCCAGTTAGCAACTTCTACTCATCAAACGAGA-GTTTTTGC---CAAAAATTAGGAGTGA--TAAGAAAACA-CACATT-----------TCTG--------T-GAAAAA--CTTCCCT-TTTCACTCTTTCATTTTCG------------------GGCTCA--T-T-TTT-T-ATGCTAGATA--AG----GCAACAGG-AAAA--ACAATCCTTCGTTTTAAAGTT-TATGGTTGTGT--------AAATC-----AACAAAA--T---T---CTAAGAGTGATAAATATG--TTA---AC-ATTTT-GCC--TTTGAAAAGAGTT-TAT---AATTTTTCAAACTT-TGG-TTGCTAAA-C--TT----TTTTTTCACTCAa
gi|5 : TTTCA-CAATTCTAAAAG----TT--CAAAATA--TC-TAAACATGCATG----TT-TTATACTGTGTTTCAAGCTTAATTTTCATTCATAGATG--ACATCTTAA------T---TTT-TTTTCAGTATAACCA----AAGGA-CGTTTTCG-CAAAA-TTAAAGCTTG-AAAAT-TT----CAATGG----AATAACTATT-CATACGAAA--A-------AAAAATCA-TTCACAAAA----AAAAATGA-------ATA--AACAACATTTTTGGTATCCCCAATTAATGTCTTCCACTCATCAAACGAAA-TGTTTTGG---CAA----------TCGA-TAGGAAAACG-CACATT-----------TTTG--------T-GAAAA----TCTTTT-TTTCACCCTATTCTTTTCA------------------GGCTCA--T-TATTT-T-ATGCCAAAAA-------GGCTACAGG-AAAG--GCAATCTTTCGTATTAAAGTT-CATGGTTGTTTT-CAACGAAAATC--GTTATTATGA--TTATT---TCAAGAGTGATAAATATG--TGA---ACTATTTT-GCC--TCTGAAAAGCGTA-TAC---GATTTTTCAACCTT-TTG-TTGCTAAA-G--TTTTTCTTTT---ACTCAGTt
gi|6 : acTATCTTGAGCAAAC----TTTAGCGACTTTTT-T----TTTTTAC-TCTTTAATATATTTTAGCAATTGTAAAAA----TC-----AAAT--TG-TAAACATGCATG----TG-TTA-ACTGGTTTTCAAACT---TTTTCATTGA-AAATG--ACAT-TTAGTT----T---TTT-T---C-GTATAA-AA----AAGGA---TTTCCG-AAAGA-TT-AAGTTTG-AAAATCTC----CAATGA----AGC--CTCGC-CATAGGAAA--A-------AATTTTC--TTCCCAAAATGGCAATG--AA-------ATAGGAAC-ACACTTTTTGTat
gi|6 : aAAA-TTTTCTTC---CCAAAAT-GGCAATGAAATAGGAA--CA-CAC-TT-----------TTTG--------T--GAAAA--CTCCCTTCTTTCACTTCTT--TTTTCG------------------GGCTC-----T-TTT-T--TGCT-GATA--A--AAGGCACTAAG-AAAATAGTAAACTTTTGTTT-ACAGTTGTAAGGTTGTTTTTAAACGAAAATT--GTTATGAGAA--TCATTCTACTAAGAATGATAAATGCG--TTA---AC-A-TTT-GCCTTTTTGAAATGCGTG-TAT----ATGTTTCAACTTTGTTGCTTGTTAAA-C--TT----TTTT---ACT-AGTgaaaactcccttctttcacttcttttttcgggctcttttttgctgataaaaggcactaagaaaatagtaaacttttgtttacagttgtaaggttgtttttaaacgaaaattgttatgagaatcattctactaagaatgataaatgcgttaacatttgcctttttgaaatgcgtgtatatgtttcaactttgttgcttgttaaacttttttactagtcat
gi|7 : atatcttgagcaaactttagcgactttttttttttactctttaatatattttagcaattgtaaaaatcaaattgtaaacatgcatgtgttaactggttttcaaactttttcattgaaaatgacatttagtttttttcgtataaaaaaggatttccgaaagattaagtttgaaaatctccaatgaagcctcgccataggaaaACTGAGTAAAAA--GTTTAGCAACATTTT-T----AT--GACCTCTTGAAAATATTTCC-CAATTATAAAAA----TT--CAAAAA---TC-TAAACATGCATG----TC-TTACACTGT--TTTAAACTTAATTTTCATTCATAAATG--ACATCTTAA------T---TTTTT---CAGTATAACAA----ATGGA-CGTTTTCG-CAAAA-TTGAAGATTC-AAAAT-TG----CAATGG----AATAACTCTC-CATAGGAAAC-AAAATTTCA--------TTCGCAAAA----AAT---TA-------ATT--AACAACATTTTTGGTATCCCCAGTTAGCAACTTCTACTCATCAAACGAGATTTTTTTGG---CAAAAATTAGCAATGAA-AAGGAAAACC-CACcat
gi|8 : TCAAACAAGA-TTTTTTGG---GAAATATTAGCAATGAA-TAGGAAAACA-CACATT-----------TTTG--------TTGAAAAA--CTCTCCT-TTTCAC-------TTTTGGAAAGGGGGGGGGGGGGGGGGGGCA--T-T-TTT-TTATGCCAGAAA--AA----TCAACAGG-AAAA--------------------GTT-TATGGTTGTTTT-ACACCAAAATC--GTTATCAATA--TCATT---CTATGAGTGATAAATATG--TTA---AC-ATTTT-GCC--TCTG-AAAGCATA-TATATAAATTTTTCAGCCCT-TTG-TTGCTAAACC--TT----TTTT---ACTCAGTc
gi|9 : tttagtgtgaccccaatattttcgtatccttTATACTAAGCAAAACAAATTTAGCAACATTTT-T----AT--GATCTTTTGAAAATATTTCA-CAATTGTAAAAA----T---CAAAAAA--TC-TAAACATGCATGCATGTC-TT-CACTGTGTTTCAAATTTGA-TTTCTTTGATAAATG--ACATCTTAAT-----T---TTT-T---CGTTATAACCA----AAGGA-CGTTTTGG-CAAAA--CGAAGTTTGAAAAAT-TC----TTATGG----TTTACCTCTC-CATAGGAAA--AAAATTTCA--------TTCGCAAAA----AA----AA-------ATA--AACAATATTTTCGGatacc
Alignments
lowQualScore : 2222222222 2222222222 66666666666666 1111 3333333333333 22222222222 3333333333 11 333333333333333333 2222222 111 11 11
lowQualScore : 333 33 3333333333 5 6666 777 44 3 6666 3 11 44 0 6666666666 3 555 7777 3 3 3 3 3 7777 8888 4 4 4 55555555555555 5 0000 8888888888888 66 55 888 0 66 5 0 5 77777777777 0000000000 77 5 2 88 222222222222222222 9999 4 4 4 5555555 0 4 66 0 1 4 5 66 66 0 222 00 777 4 4 66 4 777 0 4 4 4 55 9999 777 0
lowQualScore : ... .. .......... . .... ... .. . .... . .. .. . .......... . ... .... . . . . . .... .... . . . .............. . .... ............. .. .. ... . .. . . . ........... .......... .. . . .. .................. .... . . . ....... . . .. . . . . .. .. . ... .. ... . . .. . ... . . . . .. .... ... .
lowQualScore : 111 99 9999999999 3 1111 000 22 1 5555 3 99 66 4 8888888888 3 888 1111 3 3 3 3 3 7777 5555 0 0 0 55555555555555 0 6666 9999999999999 99 11 888 5 55 0 1 0 11111111111 7777777777 99 7 0 44 888888888888888888 7777 4 4 4 7777777 1 4 11 1 8 4 0 11 11 1 222 66 888 4 4 11 4 888 8 4 4 4 00 4444 888 2
consensus : TATACTGAGCAAAAAAAGTTTAGCAACATTTT--T-----TTTG-ACCTCTTGAAAATATTTCA-CAATTGTAAAAA----TT--CAAAAAA--TC-TAAACATGCATG----TC-TTACACTGTGTTTCAAACTTAATTTTCATTGATAAATG--ACATCTTAA------T---TTT-T---CAGTATAACCA----AAGGA-CGTTTTCG-CAAAA-TTGAAGTTTG-AAAAT-TC----CAATGG----AATAACTCTCCATA-GGAAA-A-A------A-------TTCG-CAAAA----AAT---GA-------ATA--AACAACATTTTTGGTATCCCCAGTTAGCAACTTCCACTCATCAAACGAGA-TTTTTTGG---CAAAAATTAGCAATGAA-TAGGAAAACA-CACATT-----------TTTG--------TTGAAAA--ACTCCCCT-TTTCACTCTTTCCTTTTCG------------------GGCTCA--T-T-TTT-T-ATGCCAGAAAAG--AGGCAACA-GGAAAA--ACAATCCTTCGTTTTAAAGTT-TATGGTTGTTTT-AAACGAAAATC--GTTATCAAAA--TCATT---CTAAGAGTGATAAATATG--TTA---AC-ATTTT-GCC--TCTGAAAAGCGTA-TAT---AATTTTTCAACCTT-TTG-TTGCTAAA-C--TT----TTTT---ACTCAGT
Reference ( family-7623 ) : TATACTGAGCAAAAAAAGTTTAGCAACATTTT--T-----TTTG-ACCTCTTGAAAATATTTCA-CAATTGTAAAAA----TT--CAAAAAA--TC-TAAACATGCATG----TC-TTACACTGTGTTTCAAACTTAATTTTCATTGATAAATG--ACATCTTAA------T---TTT-T---CAGTATAACCA----AAGGA-CGTTTTCG-CAAAA-TTGAAGTTTG-AAAAT-TC----CAATGG----AATAACTCTCCATA-GGAAA-A-A------A-------TTCG-CAAAA----AA----GA-------ATA--AACAACATTTTTGGTATCCCCAGTTAGCAACTTCCACTCATCAAACGAGA-TTTTTTGG---CAAAAATTAGCAATGAA-TAGGAAAACA-CACATT-----------TTTG--------TTGAAAA--ACTCCCCT-TTTCACTCTTTCCTTTTCG------------------GGCTCA--T-T-TTT-T-ATGCCAGAAAAG--AGGCAACA-GGAAAA--ACAATCCTTCGTTTTAAAGTT-TATGGTTGTTTT-AAACGAAAATC--GTTATCAAAA--TCATT---CTAAGAGTGATAAATATG--TTA---AC-ATTTT-GCC--TCTGAAAAGCGTA-TAT---AATTTTTCAACCTT-TTG-TTGCTAAA-C--TT----TTTT---ACTCAGT
gi|1 : AAAAAGTTTATTAACATTTT--C-----TTTA-ATCCCTTGAAAACATTTGA-CAATTGTAAGAA----AT--AAAAAAAAATG-TGAACATGCATG----TC-ATACACTGTGTTTCAAACTTGATTTTCATTGATAAATG--ATATCCTAA------T---TTT-T---CAGTATAATCA----AAAAA-TGTTTTCG-CAAAA-TTGAAGTTTG-AAAAT-TC----CAATGGTCCTAA-AACTCTCCATA-GGAAA-A-A------ACTCA---TTCG-CAAAA----AA----AACAAATTAATA--CACAGCATTGTTGGTATCCCCAGTTAGCAACTTACACTCATAAAACGAGA-TTTTTGGGGGGCAAAAAG-AGCAATGAA-TAGAAAAAAAATACATT-----------TTTG--------TTAAAAAAAACTCCCCT-TTTTACGCTTTTCTTTTTG------------------GGCTCAGTT-T-TTT-C-ATACCAGAAA----AGGCAACA-GGAAAC--ACAATCCTTCGTTTTAAAGTG-TATGGCTGTTTT-AAACGAAACCC--GTTATCAAAA--TCATT---CTACGAGTGATAAAAATG--TTA---AC-ATTTT-GCT--TGTAAAAAGCGCA-TAT---AATTTTTCAACCTT-TTG-TTGCTGAA-C--TT----TTTT---
gi|10 : tacatgtactgttttttATGCTGAGCAAAAAAGGTTTAGCAACATATT--T-----T--G-ACCTCTTGAAAATATTTCA-TAATTGCAAAAA----AT--TTAAAGA--TC-TAAACGTGCGTG----TC-TTACACTGTGTTTTAAACTTAATTTTCATTGATAAATGACACATCTTAATT----T---TTT-T---CGATATAACCG----AAGGA-CGTTTTCG-CAAAA-TTAAAGGTTG-AAAAT-TCTGGACAATGG----AACAACTCTCAATA-GGAAA-A-A------A-------ATCttta
gi|11 : ATACTGAGTAAATTAAGTTGAACAACATTTT--TCATTTTTTT-ATCACTTCAAAATATTTCA-CAATTCTAAAAG----TT--CAAAAAA--TC-TAAACATGCATG----TC-TTACATTGTGTTTCAAAC----TTTCCATTCATAGATG--ACATCTTAA------TTTATTT-T---CAGTATAAGCA----AATGA-CGTTTTCG-CAAAA-TTAAAGTTTG-AAAAT-at
gi|12 : tataCTGAGTAAAAGAAGTTTAGCAACATTTT--T-----TTT--ACCTCTTGAAACTATTTCA-CAATTGTAAATA----TTAACAAAAAA-----TAAAGATGCATG----TC-TTACTCTGTGTTTCAAACTTAATTTTCATTCATAAATG--ATATCTTGA------T---TTT-T---CAGTATAATCA----AAGGA-CGTTTTCG-CAAAA-TTGAAGTTTG-AAAAT-TC----CAATGG----ATTAACTCTCCATA-GGAAA-GCA------A-------TTCagtatatcttatgttcatatccgcgaaa
gi|13 : TACTGAGTAAAAAAAGTTT---------TT--T-----TTTA-ACTCCTTGAAAATATTTCATCAATTGTAAAAAAAAATT---AAAAAA--TC-TAAACATGCATG----TCTTTACACTGTGTTTCAAACTC-ATTTTCATTAATAAAT---ACATCTTAATT----T---TTT-T---CAGTATAACCAATTTAAAGATCG-TTTCG-CAAAATTTGAAGATGA-GAAAT-TC----CAATGcattc
gi|14 : ataatTCCTT--TTTTCG------------------GGCTCA--T-T-TTTCT-ATGCCCGAAAAG--A--CAAAA-GGGAAA--ACCATCCTTAGTTTTTAAGTT-GATGATTGTTTT-AAGCGAAAATC--GCTATCAAAA--TCATT---CTAAGAGTG---AATATGCATAA---AC-ATTTT-GCT--TCTGAAAAGCGCA-TGT---AATTTTTTAACCTT-TTG-GTGCTAAA-CG-TT----TTTT---ACTTAata
gi|15 : AAAATCCGGTCATCAAAAAATCATTT--CTAAGAGTGATAA-TATG--CTATATAT-ATTTTTGCC--TCTGAAAAGCGTATTAT---A----TTTAACC-T-TTG-TTGCTAAA-CTTTT----TTTT---ACTCAagtaagtc
gi|16 : TATACTGAGTAAA----GTTTAGCAACATTTT--T--------A-AACTCTTCAAAATATTTAA-GAATTGTAAACA----TT--CAAAAAA--TCTTAAATATGCCTG----Tag
gi|17 : aTTTTCG------------------GGCTCA--TAT-TTC-T-ATGCCAGAAAAG--A--CAAAAGGGAAAA--ACAATCCTTAGTTTTAAAGTT-GATGGTT
gi|18 : TGAGCAAAAAAAGTTAAGCAGCATTTG--T-----TT-G-ACCTCCTGAAAATATTTTA-CAATTG-AAAAA----
gi|19 : AAAAAAAGTTTAGCAACATTTT--T-----TTTTTATCTCTTGAAAATATTTCA-CAATTGTAAA
gi|2 : TGTACTAAGCAAAAAATGTTTAGAAACATTTTATT-----TTTT-ACCTCTTGAAGATATTTCA-CAATTGTGAAAA----TT--CAAAAAC--TC-TAAACATGCATG----TC-TTACACTGTGTTTTAAACTGAATTTTCATTGATAAATG--TCATCTTAA------T---TTT-T---CAGTATAACCA----AAGGA-CGTTTTCG-CAAAA-TTGAAGTTTA-AAAAT-TC----CAATGG----AATAACTCT-CATATAGCAA-A-A------A-------CTCG----------------GA-------ATA--AGCAACATTTTTGGTATCCCAAGTAAGCAACTTCCACTCATCAAACGAGA-TTTTTTGG---CAAAAAATAGCATTCAA-TAGGAAAACA-CAAATTTTATTTATTTATTTGTTTATTTTTTGAAGA--ACTCCCTT-TCTCACTCTTTGATTTTCT------------------AGCTCA--T-T-TTT-T-ATGCCAGAAAAGAAAGACAACA-AGATAA--ACAATCCTTCGTTTTAACGTT-TACGGTTGTTTT-AAACGAAAGTC--GTTATCAAAA--TCATT---GTAACAGGGATAAGTATGT-TTT---TC-ATCTT-GCC--TCTGAAAAGCGTA-TAT---AATTTTTCAACCGT-TTG-TTGCTAAA-C--TT----TCTT---ACTCAGT
gi|3 : CTGAGCCAAAAAAGTTTTGCAACATTTT----------TG-ACCTCTTGAAAATATTTCA-CAAATGTAAAAA----TT--CGAAACA--TC-TAAGCTTGCATG----TC-TTACACAGTGTTTCAAACTTAATTTTCATTGATAAATG--GCATATAGA------TA--TTT-T---CAGCATGTCC-----AAGGA-CGTTTTCG-CAAAG-TTGAAGTTTG-AAAAT-TC----GAATGG----AATAACTCTCCATA-GGAAG-A-AAATT--A-------TTCGCCAAAA----AAT---GA-------ATA--AATAATATTTTTCGTATCCCCAGTTAGCAACTTCCACTCATCAAACAATA--TTTTTGG---CAAATATTAGCAATGAA-TAGAAAA--A-CACATT-----------TTTG---------TGAAAA--ATTTCCTT-TTTCACTTTCTCCTTATCG------------------GGCGCA----T-TTA-T-AAACCAGAA-----AGACAAGA-GGATAA--ACAATCTTTCGTTTTA---TT-TATGGTTCTTTT-AAACAAAAATC--GTTATCAAAT--TAATT---TTAAGACTGATAAATATG--TTA---AC-ATTTT-GCC--TCTGAAAAGCGTA-TAT---AATTTTTCAACCTT-TTA-TTGCTTAA-CT-TT----TTTT---ACTTAGT
gi|4 : TAGTGAGCAAGAAC-GTTTAGCAACATTTA--T--------G-ACCTCTTGAAAAGATTTCA-CAATTGTAAAAA----TT--AAAAACA--T--TAAACATGCATG----TC-TTACATTGTGTTTCAAACTTAATTGTCATTGATAAATG--ACAT-TTAAAAAAAAT-----------CAGTATGACCA----AAGGA-CGTTTTTTTCAAAA-CTGAAGTTTG-AAAAT-TT----CAGTGG----AATAACTCTCAATA-GGAAA-A-A------AAAAATCATTCG-CAAAA----AAT---GA-------ATA--AACAACATTTT-GGTATCCCCAGTTAGCAACTTCTACTCATCAAACGAGA-GTTTTTGC---CAAAAATTAGGAGTGA--TAAGAAAACA-CACATT-----------TCTG--------T-GAAAA--ACTTCCCT-TTTCACTCTTTCATTTTCG------------------GGCTCA--T-T-TTT-T-ATGCTAGATAAG----GCAACA-GGAAAA--ACAATCCTTCGTTTTAAAGTT-TATGGTTGTGT--------AAATC-----AACAAAA--T---T---CTAAGAGTGATAAATATG--TTA---AC-ATTTT-GCC--TTTGAAAAGAGTT-TAT---AATTTTTCAAACTT-TGG-TTGCTAAA-C--TT----TTTTTTCACTCAa
gi|5 : TTTCA-CAATTCTAAAAG----TT--CAAAATA--TC-TAAACATGCATG----TT-TTATACTGTGTTTCAAGCTTAATTTTCATTCATAGATG--ACATCTTAA------T---TTT-TTTTCAGTATAACCA----AAGGA-CGTTTTCG-CAAAA-TTAAAGCTTG-AAAAT-TT----CAATGG----AATAACTATTCATA-CGAAA-A-A------AAAATCA-TTCA-CAAAA----AAAAATGA-------ATA--AACAACATTTTTGGTATCCCCAATTAATGTCTTCCACTCATCAAACGAAA-TGTTTTGG---CAA----------TCGA-TAGGAAAACG-CACATT-----------TTTG--------T-GAAAA----TCTTTT-TTTCACCCTATTCTTTTCA------------------GGCTCA--T-TATTT-T-ATGCCAAAAA-----GGCTACA-GGAAAG--GCAATCTTTCGTATTAAAGTT-CATGGTTGTTTT-CAACGAAAATC--GTTATTATGA--TTATT---TCAAGAGTGATAAATATG--TGA---ACTATTTT-GCC--TCTGAAAAGCGTA-TAC---GATTTTTCAACCTT-TTG-TTGCTAAA-G--TTTTTCTTTT---ACTCAGTt
gi|6 : acTATCTTGAGCAAAC----TTTAGCGACTTTTT--T-----TTTT-TACTCTTTAATATATTTTAGCAATTGTAAAAA----TC-----AAAT--TG-TAAACATGCATG----TG-TTA-ACTGGTTTTCAAACT---TTTTCATTGA-AAATG--ACAT-TTAGTT----T---TTT-T---C-GTATAA-AA----AAGGA---TTTCCG-AAAGA-TT-AAGTTTG-AAAATCTC----CAATGA----AGC--CTCGCCATA-GGAAA-A-A------ATTTTC--TTCC-CAAAATGGCAATG--AA-------ATAGGAAC-ACACTTTTTGTat
gi|6 : aAAA-TTTTCTTC---CCAAAAT-GGCAATGAAATAGGAA--CA-CAC-TT-----------TTTG--------T--GAAA--ACTCCCTTCTTTCACTTCTT--TTTTCG------------------GGCTC-----T-TTT-T--TGCT-GATAAA--AGGCACTA-AGAAAATAGTAAACTTTTGTTT-ACAGTTGTAAGGTTGTTTTTAAACGAAAATT--GTTATGAGAA--TCATTCTACTAAGAATGATAAATGCG--TTA---AC-A-TTT-GCCTTTTTGAAATGCGTG-TAT----ATGTTTCAACTTTGTTGCTTGTTAAA-C--TT----TTTT---ACT-AGTgaaaactcccttctttcacttcttttttcgggctcttttttgctgataaaaggcactaagaaaatagtaaacttttgtttacagttgtaaggttgtttttaaacgaaaattgttatgagaatcattctactaagaatgataaatgcgttaacatttgcctttttgaaatgcgtgtatatgtttcaactttgttgcttgttaaacttttttactagtcat
gi|7 : atatcttgagcaaactttagcgactttttttttttactctttaatatattttagcaattgtaaaaatcaaattgtaaacatgcatgtgttaactggttttcaaactttttcattgaaaatgacatttagtttttttcgtataaaaaaggatttccgaaagattaagtttgaaaatctccaatgaagcctcgccataggaaaACTGAGTAAAAA--GTTTAGCAACATTTT--T-----AT-G-ACCTCTTGAAAATATTTCC-CAATTATAAAAA----TT--CAAAAA---TC-TAAACATGCATG----TC-TTACACTGT--TTTAAACTTAATTTTCATTCATAAATG--ACATCTTAA------T---TTTTT---CAGTATAACAA----ATGGA-CGTTTTCG-CAAAA-TTGAAGATTC-AAAAT-TG----CAATGG----AATAACTCTCCATA-GGAAACA-AAATTTCA-------TTCG-CAAAA----AAT---TA-------ATT--AACAACATTTTTGGTATCCCCAGTTAGCAACTTCTACTCATCAAACGAGATTTTTTTGG---CAAAAATTAGCAATGAA-AAGGAAAACC-CACcat
gi|8 : TCAAACAAGA-TTTTTTGG---GAAATATTAGCAATGAA-TAGGAAAACA-CACATT-----------TTTG--------TTGAAAA--ACTCTCCT-TTTCAC-------TTTTGGAAAGGGGGGGGGGGGGGGGGGGCA--T-T-TTT-TTATGCCAGAAAAA----TCAACA-GGAAAA--------------------GTT-TATGGTTGTTTT-ACACCAAAATC--GTTATCAATA--TCATT---CTATGAGTGATAAATATG--TTA---AC-ATTTT-GCC--TCTG-AAAGCATA-TATATAAATTTTTCAGCCCT-TTG-TTGCTAAACC--TT----TTTT---ACTCAGTc
gi|9 : tttagtgtgaccccaatattttcgtatccttTATACTAAGCAAAACAAATTTAGCAACATTTT--T-----AT-G-ATCTTTTGAAAATATTTCA-CAATTGTAAAAA----T---CAAAAAA--TC-TAAACATGCATGCATGTC-TT-CACTGTGTTTCAAATTTGA-TTTCTTTGATAAATG--ACATCTTAAT-----T---TTT-T---CGTTATAACCA----AAGGA-CGTTTTGG-CAAAA--CGAAGTTTGAAAAAT-TC----TTATGG----TTTACCTCTCCATA-GGAAA-A-AAATTTCA-------TTCG-CAAAA----AA----AA-------ATA--AACAATATTTTCGGatacc
Alignments
lowQualScore : 2222222222 2222222222 66666666666666 1111 222222222 22222222222 3333333333 11 333333333333333333 2222222 111 11 11
lowQualScore : 333 33 3333333333 5 6666 777 44 3 6666 3 11 44 0 6666666666 999 7777 3 3 3 3 3 7777 8888 4 777 4 22222222222222 5 0000 666666666 66 55 888 0 66 5 0 5 77777777777 0000000000 77 5 2 88 222222222222222222 9999 4 4 4 5555555 0 4 66 0 1 4 5 66 66 0 222 00 777 4 4 66 4 777 0 4 4 4 55 9999 777 0
lowQualScore : ... .. .......... . .... ... .. . .... . .. .. . .......... ... .... . . . . . .... .... . ... . .............. . .... ......... .. .. ... . .. . . . ........... .......... .. . . .. .................. .... . . . ....... . . .. . . . . .. .. . ... .. ... . . .. . ... . . . . .. .... ... .
lowQualScore : 111 99 9999999999 3 1111 000 22 1 5555 3 99 66 4 8888888888 222 1111 3 3 3 3 3 7777 5555 0 000 0 55555555555555 0 6666 555555555 99 11 888 5 55 0 1 0 11111111111 7777777777 99 7 0 44 888888888888888888 7777 4 4 4 7777777 1 4 11 1 8 4 0 11 11 1 222 66 888 4 4 11 4 888 8 4 4 4 00 4444 888 2
consensus : TATACTGAGCAAAAAAAGTTTAGCAACATTTT--T-----TTTG-ACCTCTTGAAAATATTTCA-CAATTGTAAAAA----TT--CAAAAAA--TC-TAAACATGCATG----TC-TTACACTGTGTTTCAAACTTAATTTTCATTGATAAATG--ACATCTTAA------T---TTTT---CAGTATAACCA----AAGGA-CGTTTTCG-CAAAA-TTGAAGTTTG-AAAAT-TC----CAATGG----AATAACTCTCCATA-GGAAA---A-A------A-------TTCG-CAAAA----AA------TG-AATA--AACAACATTTTTGGTATCCCCAGTTAGCAACTTCCACTCATCAAACGAGA-TTTTTTGG---CAAAAATTAGCAATGAA-TAGGAAAACA-CACATT-----------TTTG--------TTGAAAA--ACTCCCCT-TTTCACTCTTTCCTTTTCG------------------GGCTCA--T-T-TTT-T-ATGCCAGAAAAG--AGGCAACA-GGAAAA--ACAATCCTTCGTTTTAAAGTT-TATGGTTGTTTT-AAACGAAAATC--GTTATCAAAA--TCATT---CTAAGAGTGATAAATATG--TTA---AC-ATTTT-GCC--TCTGAAAAGCGTA-TAT---AATTTTTCAACCTT-TTG-TTGCTAAA-C--TT----TTTT---ACTCAGT
Reference ( family-7623 ) : TATACTGAGCAAAAAAAGTTTAGCAACATTTT--T-----TTTG-ACCTCTTGAAAATATTTCA-CAATTGTAAAAA----TT--CAAAAAA--TC-TAAACATGCATG----TC-TTACACTGTGTTTCAAACTTAATTTTCATTGATAAATG--ACATCTTAA------T---TTTT---CAGTATAACCA----AAGGA-CGTTTTCG-CAAAA-TTGAAGTTTG-AAAAT-TC----CAATGG----AATAACTCTCCATA-GGAAA---A-A------A-------TTCG-CAAAA----AA------TG-AATA--AACAACATTTTTGGTATCCCCAGTTAGCAACTTCCACTCATCAAACGAGA-TTTTTTGG---CAAAAATTAGCAATGAA-TAGGAAAACA-CACATT-----------TTTG--------TTGAAAA--ACTCCCCT-TTTCACTCTTTCCTTTTCG------------------GGCTCA--T-T-TTT-T-ATGCCAGAAAAG--AGGCAACA-GGAAAA--ACAATCCTTCGTTTTAAAGTT-TATGGTTGTTTT-AAACGAAAATC--GTTATCAAAA--TCATT---CTAAGAGTGATAAATATG--TTA---AC-ATTTT-GCC--TCTGAAAAGCGTA-TAT---AATTTTTCAACCTT-TTG-TTGCTAAA-C--TT----TTTT---ACTCAGT
gi|1 : AAAAAGTTTATTAACATTTT--C-----TTTA-ATCCCTTGAAAACATTTGA-CAATTGTAAGAA----AT--AAAAAAAAATG-TGAACATGCATG----TC-ATACACTGTGTTTCAAACTTGATTTTCATTGATAAATG--ATATCCTAA------T---TTTT---CAGTATAATCA----AAAAA-TGTTTTCG-CAAAA-TTGAAGTTTG-AAAAT-TC----CAATGGTCCTAA-AACTCTCCATA-GGAAA---A-A------ACTCA---TTCG-CAAAA----AAAACAAATT-AATA--CACAGCATTGTTGGTATCCCCAGTTAGCAACTTACACTCATAAAACGAGA-TTTTTGGGGGGCAAAAAG-AGCAATGAA-TAGAAAAAAAATACATT-----------TTTG--------TTAAAAAAAACTCCCCT-TTTTACGCTTTTCTTTTTG------------------GGCTCAGTT-T-TTT-C-ATACCAGAAA----AGGCAACA-GGAAAC--ACAATCCTTCGTTTTAAAGTG-TATGGCTGTTTT-AAACGAAACCC--GTTATCAAAA--TCATT---CTACGAGTGATAAAAATG--TTA---AC-ATTTT-GCT--TGTAAAAAGCGCA-TAT---AATTTTTCAACCTT-TTG-TTGCTGAA-C--TT----TTTT---
gi|10 : tacatgtactgttttttATGCTGAGCAAAAAAGGTTTAGCAACATATT--T-----T--G-ACCTCTTGAAAATATTTCA-TAATTGCAAAAA----AT--TTAAAGA--TC-TAAACGTGCGTG----TC-TTACACTGTGTTTTAAACTTAATTTTCATTGATAAATGACACATCTTAATT----T---TTTT---CGATATAACCG----AAGGA-CGTTTTCG-CAAAA-TTAAAGGTTG-AAAAT-TCTGGACAATGG----AACAACTCTCAATA-GGAAA---A-A------A-------ATCttta
gi|11 : ATACTGAGTAAATTAAGTTGAACAACATTTT--TCATTTTTTT-ATCACTTCAAAATATTTCA-CAATTCTAAAAG----TT--CAAAAAA--TC-TAAACATGCATG----TC-TTACATTGTGTTTCAAAC----TTTCCATTCATAGATG--ACATCTTAA------TTTATTTT---CAGTATAAGCA----AATGA-CGTTTTCG-CAAAA-TTAAAGTTTG-AAAAT-at
gi|12 : tataCTGAGTAAAAGAAGTTTAGCAACATTTT--T-----TTT--ACCTCTTGAAACTATTTCA-CAATTGTAAATA----TTAACAAAAAA-----TAAAGATGCATG----TC-TTACTCTGTGTTTCAAACTTAATTTTCATTCATAAATG--ATATCTTGA------T---TTTT---CAGTATAATCA----AAGGA-CGTTTTCG-CAAAA-TTGAAGTTTG-AAAAT-TC----CAATGG----ATTAACTCTCCATA-GGAAA---GCA------A-------TTCagtatatcttatgttcatatccgcgaaa
gi|13 : TACTGAGTAAAAAAAGTTT---------TT--T-----TTTA-ACTCCTTGAAAATATTTCATCAATTGTAAAAAAAAATT---AAAAAA--TC-TAAACATGCATG----TCTTTACACTGTGTTTCAAACTC-ATTTTCATTAATAAAT---ACATCTTAATT----T---TTTT---CAGTATAACCAATTTAAAGATCG-TTTCG-CAAAATTTGAAGATGA-GAAAT-TC----CAATGcattc
gi|14 : ataatTCCTT--TTTTCG------------------GGCTCA--T-T-TTTCT-ATGCCCGAAAAG--A--CAAAA-GGGAAA--ACCATCCTTAGTTTTTAAGTT-GATGATTGTTTT-AAGCGAAAATC--GCTATCAAAA--TCATT---CTAAGAGTG---AATATGCATAA---AC-ATTTT-GCT--TCTGAAAAGCGCA-TGT---AATTTTTTAACCTT-TTG-GTGCTAAA-CG-TT----TTTT---ACTTAata
gi|15 : AAAATCCGGTCATCAAAAAATCATTT--CTAAGAGTGATAA-TATG--CTATATAT-ATTTTTGCC--TCTGAAAAGCGTATTAT---A----TTTAACC-T-TTG-TTGCTAAA-CTTTT----TTTT---ACTCAagtaagtc
gi|16 : TATACTGAGTAAA----GTTTAGCAACATTTT--T--------A-AACTCTTCAAAATATTTAA-GAATTGTAAACA----TT--CAAAAAA--TCTTAAATATGCCTG----Tag
gi|17 : aTTTTCG------------------GGCTCA--TAT-TTC-T-ATGCCAGAAAAG--A--CAAAAGGGAAAA--ACAATCCTTAGTTTTAAAGTT-GATGGTT
gi|18 : TGAGCAAAAAAAGTTAAGCAGCATTTG--T-----TT-G-ACCTCCTGAAAATATTTTA-CAATTG-AAAAA----
gi|19 : AAAAAAAGTTTAGCAACATTTT--T-----TTTTTATCTCTTGAAAATATTTCA-CAATTGTAAA
gi|2 : TGTACTAAGCAAAAAATGTTTAGAAACATTTTATT-----TTTT-ACCTCTTGAAGATATTTCA-CAATTGTGAAAA----TT--CAAAAAC--TC-TAAACATGCATG----TC-TTACACTGTGTTTTAAACTGAATTTTCATTGATAAATG--TCATCTTAA------T---TTTT---CAGTATAACCA----AAGGA-CGTTTTCG-CAAAA-TTGAAGTTTA-AAAAT-TC----CAATGG----AATAACTCT-CATATAGCAA---A-A------A-------CTCG-------------------G-AATA--AGCAACATTTTTGGTATCCCAAGTAAGCAACTTCCACTCATCAAACGAGA-TTTTTTGG---CAAAAAATAGCATTCAA-TAGGAAAACA-CAAATTTTATTTATTTATTTGTTTATTTTTTGAAGA--ACTCCCTT-TCTCACTCTTTGATTTTCT------------------AGCTCA--T-T-TTT-T-ATGCCAGAAAAGAAAGACAACA-AGATAA--ACAATCCTTCGTTTTAACGTT-TACGGTTGTTTT-AAACGAAAGTC--GTTATCAAAA--TCATT---GTAACAGGGATAAGTATGT-TTT---TC-ATCTT-GCC--TCTGAAAAGCGTA-TAT---AATTTTTCAACCGT-TTG-TTGCTAAA-C--TT----TCTT---ACTCAGT
gi|3 : CTGAGCCAAAAAAGTTTTGCAACATTTT----------TG-ACCTCTTGAAAATATTTCA-CAAATGTAAAAA----TT--CGAAACA--TC-TAAGCTTGCATG----TC-TTACACAGTGTTTCAAACTTAATTTTCATTGATAAATG--GCATATAGA------TA--TTTT---CAGCATGTCC-----AAGGA-CGTTTTCG-CAAAG-TTGAAGTTTG-AAAAT-TC----GAATGG----AATAACTCTCCATA-GGAAG---A-AAATT--A-------TTCGCCAAAA----AA------TG-AATA--AATAATATTTTTCGTATCCCCAGTTAGCAACTTCCACTCATCAAACAATA--TTTTTGG---CAAATATTAGCAATGAA-TAGAAAA--A-CACATT-----------TTTG---------TGAAAA--ATTTCCTT-TTTCACTTTCTCCTTATCG------------------GGCGCA----T-TTA-T-AAACCAGAA-----AGACAAGA-GGATAA--ACAATCTTTCGTTTTA---TT-TATGGTTCTTTT-AAACAAAAATC--GTTATCAAAT--TAATT---TTAAGACTGATAAATATG--TTA---AC-ATTTT-GCC--TCTGAAAAGCGTA-TAT---AATTTTTCAACCTT-TTA-TTGCTTAA-CT-TT----TTTT---ACTTAGT
gi|4 : TAGTGAGCAAGAAC-GTTTAGCAACATTTA--T--------G-ACCTCTTGAAAAGATTTCA-CAATTGTAAAAA----TT--AAAAACA--T--TAAACATGCATG----TC-TTACATTGTGTTTCAAACTTAATTGTCATTGATAAATG--ACAT-TTAAAAAAAAT----------CAGTATGACCA----AAGGA-CGTTTTTTTCAAAA-CTGAAGTTTG-AAAAT-TT----CAGTGG----AATAACTCTCAATA-GGAAA---A-A------AAAAATCATTCG-CAAAA----AA------TG-AATA--AACAACATTTT-GGTATCCCCAGTTAGCAACTTCTACTCATCAAACGAGA-GTTTTTGC---CAAAAATTAGGAGTGA--TAAGAAAACA-CACATT-----------TCTG--------T-GAAAA--ACTTCCCT-TTTCACTCTTTCATTTTCG------------------GGCTCA--T-T-TTT-T-ATGCTAGATAAG----GCAACA-GGAAAA--ACAATCCTTCGTTTTAAAGTT-TATGGTTGTGT--------AAATC-----AACAAAA--T---T---CTAAGAGTGATAAATATG--TTA---AC-ATTTT-GCC--TTTGAAAAGAGTT-TAT---AATTTTTCAAACTT-TGG-TTGCTAAA-C--TT----TTTTTTCACTCAa
gi|5 : TTTCA-CAATTCTAAAAG----TT--CAAAATA--TC-TAAACATGCATG----TT-TTATACTGTGTTTCAAGCTTAATTTTCATTCATAGATG--ACATCTTAA------T---TTTTTTTCAGTATAACCA----AAGGA-CGTTTTCG-CAAAA-TTAAAGCTTG-AAAAT-TT----CAATGG----AATAACTATTCATA-CGAAA---A-A------AAAATCA-TTCA-CAAAA----AAAAA---TG-AATA--AACAACATTTTTGGTATCCCCAATTAATGTCTTCCACTCATCAAACGAAA-TGTTTTGG---CAA----------TCGA-TAGGAAAACG-CACATT-----------TTTG--------T-GAAAA----TCTTTT-TTTCACCCTATTCTTTTCA------------------GGCTCA--T-TATTT-T-ATGCCAAAAA-----GGCTACA-GGAAAG--GCAATCTTTCGTATTAAAGTT-CATGGTTGTTTT-CAACGAAAATC--GTTATTATGA--TTATT---TCAAGAGTGATAAATATG--TGA---ACTATTTT-GCC--TCTGAAAAGCGTA-TAC---GATTTTTCAACCTT-TTG-TTGCTAAA-G--TTTTTCTTTT---ACTCAGTt
gi|6 : acTATCTTGAGCAAAC----TTTAGCGACTTTTT--T-----TTTT-TACTCTTTAATATATTTTAGCAATTGTAAAAA----TC-----AAAT--TG-TAAACATGCATG----TG-TTA-ACTGGTTTTCAAACT---TTTTCATTGA-AAATG--ACAT-TTAGTT----T---TTTT---C-GTATAA-AA----AAGGA---TTTCCG-AAAGA-TT-AAGTTTG-AAAATCTC----CAATGA----AGC--CTCGCCATA-GGAAA---A-A------ATTTTC--TTCC-CAAAATGGCAA------TGAAATAGGAAC-ACACTTTTTGTat
gi|6 : aAAA-TTTTCTTC---CCAAAAT-GGCAATGAAATAGGAA--CA-CAC-TT-----------TTTG--------T--GAAA--ACTCCCTTCTTTCACTTCTT--TTTTCG------------------GGCTC-----T-TTT-T--TGCT-GATAAA--AGGCACTA-AGAAAATAGTAAACTTTTGTTT-ACAGTTGTAAGGTTGTTTTTAAACGAAAATT--GTTATGAGAA--TCATTCTACTAAGAATGATAAATGCG--TTA---AC-A-TTT-GCCTTTTTGAAATGCGTG-TAT----ATGTTTCAACTTTGTTGCTTGTTAAA-C--TT----TTTT---ACT-AGTgaaaactcccttctttcacttcttttttcgggctcttttttgctgataaaaggcactaagaaaatagtaaacttttgtttacagttgtaaggttgtttttaaacgaaaattgttatgagaatcattctactaagaatgataaatgcgttaacatttgcctttttgaaatgcgtgtatatgtttcaactttgttgcttgttaaacttttttactagtcat
gi|7 : atatcttgagcaaactttagcgactttttttttttactctttaatatattttagcaattgtaaaaatcaaattgtaaacatgcatgtgttaactggttttcaaactttttcattgaaaatgacatttagtttttttcgtataaaaaaggatttccgaaagattaagtttgaaaatctccaatgaagcctcgccataggaaaACTGAGTAAAAA--GTTTAGCAACATTTT--T-----AT-G-ACCTCTTGAAAATATTTCC-CAATTATAAAAA----TT--CAAAAA---TC-TAAACATGCATG----TC-TTACACTGT--TTTAAACTTAATTTTCATTCATAAATG--ACATCTTAA------T---TTTTT--CAGTATAACAA----ATGGA-CGTTTTCG-CAAAA-TTGAAGATTC-AAAAT-TG----CAATGG----AATAACTCTCCATA-GGAAACAAA-ATTTC--A-------TTCG-CAAAA----AA------TT-AATT--AACAACATTTTTGGTATCCCCAGTTAGCAACTTCTACTCATCAAACGAGATTTTTTTGG---CAAAAATTAGCAATGAA-AAGGAAAACC-CACcat
gi|8 : TCAAACAAGA-TTTTTTGG---GAAATATTAGCAATGAA-TAGGAAAACA-CACATT-----------TTTG--------TTGAAAA--ACTCTCCT-TTTCAC-------TTTTGGAAAGGGGGGGGGGGGGGGGGGGCA--T-T-TTT-TTATGCCAGAAAAA----TCAACA-GGAAAA--------------------GTT-TATGGTTGTTTT-ACACCAAAATC--GTTATCAATA--TCATT---CTATGAGTGATAAATATG--TTA---AC-ATTTT-GCC--TCTG-AAAGCATA-TATATAAATTTTTCAGCCCT-TTG-TTGCTAAACC--TT----TTTT---ACTCAGTc
gi|9 : tttagtgtgaccccaatattttcgtatccttTATACTAAGCAAAACAAATTTAGCAACATTTT--T-----AT-G-ATCTTTTGAAAATATTTCA-CAATTGTAAAAA----T---CAAAAAA--TC-TAAACATGCATGCATGTC-TT-CACTGTGTTTCAAATTTGA-TTTCTTTGATAAATG--ACATCTTAAT-----T---TTTT---CGTTATAACCA----AAGGA-CGTTTTGG-CAAAA--CGAAGTTTGAAAAAT-TC----TTATGG----TTTACCTCTCCATA-GGAAA---A-AAATTTCA-------TTCG-CAAAA----AA-------A-AATA--AACAATATTTTCGGatacc
Alignments
lowQualScore : 2222222222 2222222222 66666666666666 1111 222222222 22222222222 3333333333 11 333333333333333333 2222222 111 11 11
lowQualScore : 333 33 3333333333 5 6666 777 44 3 6666 3 11 44 0 6666666666 999 7777 3 3 3 3 3 7777 8888 4 777 4 22222222222222 5 0000 666666666 66 55 888 0 66 5 0 5 77777777777 0000000000 77 5 2 88 222222222222222222 9999 4 4 4 5555555 0 4 66 0 1 4 5 66 66 0 222 00 777 4 4 66 4 777 0 4 4 4 55 9999 777 0
lowQualScore : ... .. .......... . .... ... .. . .... . .. .. . .......... ... .... . . . . . .... .... . ... . .............. . .... ......... .. .. ... . .. . . . ........... .......... .. . . .. .................. .... . . . ....... . . .. . . . . .. .. . ... .. ... . . .. . ... . . . . .. .... ... .
lowQualScore : 111 99 9999999999 3 1111 000 22 1 5555 3 99 66 4 8888888888 222 1111 3 3 3 3 3 7777 5555 0 000 0 55555555555555 0 6666 555555555 99 11 888 5 55 0 1 0 11111111111 7777777777 99 7 0 44 888888888888888888 7777 4 4 4 7777777 1 4 11 1 8 4 0 11 11 1 222 66 888 4 4 11 4 888 8 4 4 4 00 4444 888 2
consensus : TATACTGAGCAAAAAAAGTTTAGCAACATTTT--T-----TTTG-ACCTCTTGAAAATATTTCA-CAATTGTAAAAA----TT--CAAAAAA--TC-TAAACATGCATG----TC-TTACACTGTGTTTCAAACTTAATTTTCATTGATAAATG--ACATCTTAA------T---TTTT---CAGTATAACCA----AAGGA-CGTTTTCG-CAAAA-TTGAAGTTTG-AAAAT-TC----CAATGG----AATAACTCTCCATA-GGAAA---A-A------A-------TTCG-CAAAA----AA------TG-AATA--AACAACATTTTTGGTATCCCCAGTTAGCAACTTCCACTCATCAAACGAGA-TTTTTTGG---CAAAAATTAGCAATGAA-TAGGAAAACA-CACATT-----------TTTG--------TTGAAAA--ACTCCCCT-TTTCACTCTTTCCTTTTCG------------------GGCTCA--T-T-TTT-T-ATGCCAGAAAAG--AGGCAACA-GGAAAA--ACAATCCTTCGTTTTAAAGTT-TATGGTTGTTTT-AAACGAAAATC--GTTATCAAAA--TCATT---CTAAGAGTGATAAATATG--TTA---AC-ATTTT-GCC--TCTGAAAAGCGTA-TAT---AATTTTTCAACCTT-TTG-TTGCTAAA-C--TT----TTTT---ACTCAGT
Reference ( family-7623 ) : TATACTGAGCAAAAAAAGTTTAGCAACATTTT--T-----TTTG-ACCTCTTGAAAATATTTCA-CAATTGTAAAAA----TT--CAAAAAA--TC-TAAACATGCATG----TC-TTACACTGTGTTTCAAACTTAATTTTCATTGATAAATG--ACATCTTAA------T---TTTT---CAGTATAACCA----AAGGA-CGTTTTCG-CAAAA-TTGAAGTTTG-AAAAT-TC----CAATGG----AATAACTCTCCATA-GGAAA---A-A------A-------TTCG-CAAAA----AA------TG-AATA--AACAACATTTTTGGTATCCCCAGTTAGCAACTTCCACTCATCAAACGAGA-TTTTTTGG---CAAAAATTAGCAATGAA-TAGGAAAACA-CACATT-----------TTTG--------TTGAAAA--ACTCCCCT-TTTCACTCTTTCCTTTTCG------------------GGCTCA--T-T-TTT-T-ATGCCAGAAAAG--AGGCAACA-GGAAAA--ACAATCCTTCGTTTTAAAGTT-TATGGTTGTTTT-AAACGAAAATC--GTTATCAAAA--TCATT---CTAAGAGTGATAAATATG--TTA---AC-ATTTT-GCC--TCTGAAAAGCGTA-TAT---AATTTTTCAACCTT-TTG-TTGCTAAA-C--TT----TTTT---ACTCAGT
gi|1 : AAAAAGTTTATTAACATTTT--C-----TTTA-ATCCCTTGAAAACATTTGA-CAATTGTAAGAA----AT--AAAAAAAAATG-TGAACATGCATG----TC-ATACACTGTGTTTCAAACTTGATTTTCATTGATAAATG--ATATCCTAA------T---TTTT---CAGTATAATCA----AAAAA-TGTTTTCG-CAAAA-TTGAAGTTTG-AAAAT-TC----CAATGGTCCTAA-AACTCTCCATA-GGAAA---A-A------ACTCA---TTCG-CAAAA----AAAACAAATT-AATA--CACAGCATTGTTGGTATCCCCAGTTAGCAACTTACACTCATAAAACGAGA-TTTTTGGGGGGCAAAAAG-AGCAATGAA-TAGAAAAAAAATACATT-----------TTTG--------TTAAAAAAAACTCCCCT-TTTTACGCTTTTCTTTTTG------------------GGCTCAGTT-T-TTT-C-ATACCAGAAA----AGGCAACA-GGAAAC--ACAATCCTTCGTTTTAAAGTG-TATGGCTGTTTT-AAACGAAACCC--GTTATCAAAA--TCATT---CTACGAGTGATAAAAATG--TTA---AC-ATTTT-GCT--TGTAAAAAGCGCA-TAT---AATTTTTCAACCTT-TTG-TTGCTGAA-C--TT----TTTT---
gi|10 : tacatgtactgttttttATGCTGAGCAAAAAAGGTTTAGCAACATATT--T-----T--G-ACCTCTTGAAAATATTTCA-TAATTGCAAAAA----AT--TTAAAGA--TC-TAAACGTGCGTG----TC-TTACACTGTGTTTTAAACTTAATTTTCATTGATAAATGACACATCTTAATT----T---TTTT---CGATATAACCG----AAGGA-CGTTTTCG-CAAAA-TTAAAGGTTG-AAAAT-TCTGGACAATGG----AACAACTCTCAATA-GGAAA---A-A------A-------ATCttta
gi|11 : ATACTGAGTAAATTAAGTTGAACAACATTTT--TCATTTTTTT-ATCACTTCAAAATATTTCA-CAATTCTAAAAG----TT--CAAAAAA--TC-TAAACATGCATG----TC-TTACATTGTGTTTCAAAC----TTTCCATTCATAGATG--ACATCTTAA------TTTATTTT---CAGTATAAGCA----AATGA-CGTTTTCG-CAAAA-TTAAAGTTTG-AAAAT-at
gi|12 : tataCTGAGTAAAAGAAGTTTAGCAACATTTT--T-----TTT--ACCTCTTGAAACTATTTCA-CAATTGTAAATA----TTAACAAAAAA-----TAAAGATGCATG----TC-TTACTCTGTGTTTCAAACTTAATTTTCATTCATAAATG--ATATCTTGA------T---TTTT---CAGTATAATCA----AAGGA-CGTTTTCG-CAAAA-TTGAAGTTTG-AAAAT-TC----CAATGG----ATTAACTCTCCATA-GGAAA---GCA------A-------TTCagtatatcttatgttcatatccgcgaaa
gi|13 : TACTGAGTAAAAAAAGTTT---------TT--T-----TTTA-ACTCCTTGAAAATATTTCATCAATTGTAAAAAAAAATT---AAAAAA--TC-TAAACATGCATG----TCTTTACACTGTGTTTCAAACTC-ATTTTCATTAATAAAT---ACATCTTAATT----T---TTTT---CAGTATAACCAATTTAAAGATCG-TTTCG-CAAAATTTGAAGATGA-GAAAT-TC----CAATGcattc
gi|14 : ataatTCCTT--TTTTCG------------------GGCTCA--T-T-TTTCT-ATGCCCGAAAAG--A--CAAAA-GGGAAA--ACCATCCTTAGTTTTTAAGTT-GATGATTGTTTT-AAGCGAAAATC--GCTATCAAAA--TCATT---CTAAGAGTG---AATATGCATAA---AC-ATTTT-GCT--TCTGAAAAGCGCA-TGT---AATTTTTTAACCTT-TTG-GTGCTAAA-CG-TT----TTTT---ACTTAata
gi|15 : AAAATCCGGTCATCAAAAAATCATTT--CTAAGAGTGATAA-TATG--CTATATAT-ATTTTTGCC--TCTGAAAAGCGTATTAT---A----TTTAACC-T-TTG-TTGCTAAA-CTTTT----TTTT---ACTCAagtaagtc
gi|16 : TATACTGAGTAAA----GTTTAGCAACATTTT--T--------A-AACTCTTCAAAATATTTAA-GAATTGTAAACA----TT--CAAAAAA--TCTTAAATATGCCTG----Tag
gi|17 : aTTTTCG------------------GGCTCA--TAT-TTC-T-ATGCCAGAAAAG--A--CAAAAGGGAAAA--ACAATCCTTAGTTTTAAAGTT-GATGGTT
gi|18 : TGAGCAAAAAAAGTTAAGCAGCATTTG--T-----TT-G-ACCTCCTGAAAATATTTTA-CAATTG-AAAAA----
gi|19 : AAAAAAAGTTTAGCAACATTTT--T-----TTTTTATCTCTTGAAAATATTTCA-CAATTGTAAA
gi|2 : TGTACTAAGCAAAAAATGTTTAGAAACATTTTATT-----TTTT-ACCTCTTGAAGATATTTCA-CAATTGTGAAAA----TT--CAAAAAC--TC-TAAACATGCATG----TC-TTACACTGTGTTTTAAACTGAATTTTCATTGATAAATG--TCATCTTAA------T---TTTT---CAGTATAACCA----AAGGA-CGTTTTCG-CAAAA-TTGAAGTTTA-AAAAT-TC----CAATGG----AATAACTCT-CATATAGCAA---A-A------A-------CTCG-------------------G-AATA--AGCAACATTTTTGGTATCCCAAGTAAGCAACTTCCACTCATCAAACGAGA-TTTTTTGG---CAAAAAATAGCATTCAA-TAGGAAAACA-CAAATTTTATTTATTTATTTGTTTATTTTTTGAAGA--ACTCCCTT-TCTCACTCTTTGATTTTCT------------------AGCTCA--T-T-TTT-T-ATGCCAGAAAAGAAAGACAACA-AGATAA--ACAATCCTTCGTTTTAACGTT-TACGGTTGTTTT-AAACGAAAGTC--GTTATCAAAA--TCATT---GTAACAGGGATAAGTATGT-TTT---TC-ATCTT-GCC--TCTGAAAAGCGTA-TAT---AATTTTTCAACCGT-TTG-TTGCTAAA-C--TT----TCTT---ACTCAGT
gi|3 : CTGAGCCAAAAAAGTTTTGCAACATTTT----------TG-ACCTCTTGAAAATATTTCA-CAAATGTAAAAA----TT--CGAAACA--TC-TAAGCTTGCATG----TC-TTACACAGTGTTTCAAACTTAATTTTCATTGATAAATG--GCATATAGA------TA--TTTT---CAGCATGTCC-----AAGGA-CGTTTTCG-CAAAG-TTGAAGTTTG-AAAAT-TC----GAATGG----AATAACTCTCCATA-GGAAG---A-AAATT--A-------TTCGCCAAAA----AA------TG-AATA--AATAATATTTTTCGTATCCCCAGTTAGCAACTTCCACTCATCAAACAATA--TTTTTGG---CAAATATTAGCAATGAA-TAGAAAA--A-CACATT-----------TTTG---------TGAAAA--ATTTCCTT-TTTCACTTTCTCCTTATCG------------------GGCGCA----T-TTA-T-AAACCAGAA-----AGACAAGA-GGATAA--ACAATCTTTCGTTTTA---TT-TATGGTTCTTTT-AAACAAAAATC--GTTATCAAAT--TAATT---TTAAGACTGATAAATATG--TTA---AC-ATTTT-GCC--TCTGAAAAGCGTA-TAT---AATTTTTCAACCTT-TTA-TTGCTTAA-CT-TT----TTTT---ACTTAGT
gi|4 : TAGTGAGCAAGAAC-GTTTAGCAACATTTA--T--------G-ACCTCTTGAAAAGATTTCA-CAATTGTAAAAA----TT--AAAAACA--T--TAAACATGCATG----TC-TTACATTGTGTTTCAAACTTAATTGTCATTGATAAATG--ACAT-TTAAAAAAAAT----------CAGTATGACCA----AAGGA-CGTTTTTTTCAAAA-CTGAAGTTTG-AAAAT-TT----CAGTGG----AATAACTCTCAATA-GGAAA---A-A------AAAAATCATTCG-CAAAA----AA------TG-AATA--AACAACATTTT-GGTATCCCCAGTTAGCAACTTCTACTCATCAAACGAGA-GTTTTTGC---CAAAAATTAGGAGTGA--TAAGAAAACA-CACATT-----------TCTG--------T-GAAAA--ACTTCCCT-TTTCACTCTTTCATTTTCG------------------GGCTCA--T-T-TTT-T-ATGCTAGATAAG----GCAACA-GGAAAA--ACAATCCTTCGTTTTAAAGTT-TATGGTTGTGT--------AAATC-----AACAAAA--T---T---CTAAGAGTGATAAATATG--TTA---AC-ATTTT-GCC--TTTGAAAAGAGTT-TAT---AATTTTTCAAACTT-TGG-TTGCTAAA-C--TT----TTTTTTCACTCAa
gi|5 : TTTCA-CAATTCTAAAAG----TT--CAAAATA--TC-TAAACATGCATG----TT-TTATACTGTGTTTCAAGCTTAATTTTCATTCATAGATG--ACATCTTAA------T---TTTTTTTCAGTATAACCA----AAGGA-CGTTTTCG-CAAAA-TTAAAGCTTG-AAAAT-TT----CAATGG----AATAACTATTCATA-CGAAA---A-A------AAAATCA-TTCA-CAAAA----AAAAA---TG-AATA--AACAACATTTTTGGTATCCCCAATTAATGTCTTCCACTCATCAAACGAAA-TGTTTTGG---CAA----------TCGA-TAGGAAAACG-CACATT-----------TTTG--------T-GAAAA----TCTTTT-TTTCACCCTATTCTTTTCA------------------GGCTCA--T-TATTT-T-ATGCCAAAAA-----GGCTACA-GGAAAG--GCAATCTTTCGTATTAAAGTT-CATGGTTGTTTT-CAACGAAAATC--GTTATTATGA--TTATT---TCAAGAGTGATAAATATG--TGA---ACTATTTT-GCC--TCTGAAAAGCGTA-TAC---GATTTTTCAACCTT-TTG-TTGCTAAA-G--TTTTTCTTTT---ACTCAGTt
gi|6 : acTATCTTGAGCAAAC----TTTAGCGACTTTTT--T-----TTTT-TACTCTTTAATATATTTTAGCAATTGTAAAAA----TC-----AAAT--TG-TAAACATGCATG----TG-TTA-ACTGGTTTTCAAACT---TTTTCATTGA-AAATG--ACAT-TTAGTT----T---TTTT---C-GTATAA-AA----AAGGA---TTTCCG-AAAGA-TT-AAGTTTG-AAAATCTC----CAATGA----AGC--CTCGCCATA-GGAAA---A-A------ATTTTC--TTCC-CAAAATGGCAA------TGAAATAGGAAC-ACACTTTTTGTat
gi|6 : aAAA-TTTTCTTC---CCAAAAT-GGCAATGAAATAGGAA--CA-CAC-TT-----------TTTG--------T--GAAA--ACTCCCTTCTTTCACTTCTT--TTTTCG------------------GGCTC-----T-TTT-T--TGCT-GATAAA--AGGCACTA-AGAAAATAGTAAACTTTTGTTT-ACAGTTGTAAGGTTGTTTTTAAACGAAAATT--GTTATGAGAA--TCATTCTACTAAGAATGATAAATGCG--TTA---AC-A-TTT-GCCTTTTTGAAATGCGTG-TAT----ATGTTTCAACTTTGTTGCTTGTTAAA-C--TT----TTTT---ACT-AGTgaaaactcccttctttcacttcttttttcgggctcttttttgctgataaaaggcactaagaaaatagtaaacttttgtttacagttgtaaggttgtttttaaacgaaaattgttatgagaatcattctactaagaatgataaatgcgttaacatttgcctttttgaaatgcgtgtatatgtttcaactttgttgcttgttaaacttttttactagtcat
gi|7 : atatcttgagcaaactttagcgactttttttttttactctttaatatattttagcaattgtaaaaatcaaattgtaaacatgcatgtgttaactggttttcaaactttttcattgaaaatgacatttagtttttttcgtataaaaaaggatttccgaaagattaagtttgaaaatctccaatgaagcctcgccataggaaaACTGAGTAAAAA--GTTTAGCAACATTTT--T-----AT-G-ACCTCTTGAAAATATTTCC-CAATTATAAAAA----TT--CAAAAA---TC-TAAACATGCATG----TC-TTACACTGT--TTTAAACTTAATTTTCATTCATAAATG--ACATCTTAA------T---TTTTT--CAGTATAACAA----ATGGA-CGTTTTCG-CAAAA-TTGAAGATTC-AAAAT-TG----CAATGG----AATAACTCTCCATA-GGAAACAAA-ATTTC--A-------TTCG-CAAAA----AA------TT-AATT--AACAACATTTTTGGTATCCCCAGTTAGCAACTTCTACTCATCAAACGAGATTTTTTTGG---CAAAAATTAGCAATGAA-AAGGAAAACC-CACcat
gi|8 : TCAAACAAGA-TTTTTTGG---GAAATATTAGCAATGAA-TAGGAAAACA-CACATT-----------TTTG--------TTGAAAA--ACTCTCCT-TTTCAC-------TTTTGGAAAGGGGGGGGGGGGGGGGGGGCA--T-T-TTT-TTATGCCAGAAAAA----TCAACA-GGAAAA--------------------GTT-TATGGTTGTTTT-ACACCAAAATC--GTTATCAATA--TCATT---CTATGAGTGATAAATATG--TTA---AC-ATTTT-GCC--TCTG-AAAGCATA-TATATAAATTTTTCAGCCCT-TTG-TTGCTAAACC--TT----TTTT---ACTCAGTc
gi|9 : tttagtgtgaccccaatattttcgtatccttTATACTAAGCAAAACAAATTTAGCAACATTTT--T-----AT-G-ATCTTTTGAAAATATTTCA-CAATTGTAAAAA----T---CAAAAAA--TC-TAAACATGCATGCATGTC-TT-CACTGTGTTTCAAATTTGA-TTTCTTTGATAAATG--ACATCTTAAT-----T---TTTT---CGTTATAACCA----AAGGA-CGTTTTGG-CAAAA--CGAAGTTTGAAAAAT-TC----TTATGG----TTTACCTCTCCATA-GGAAA---A-AAATTTCA-------TTCG-CAAAA----AA-------A-AATA--AACAATATTTTCGGatacc
blockSeqs : AAG AT CATTTTTTT T AAAA AAC . T CATG T TA AC AAAAAAT TTT ATTT T T T A C TGGA . T CAA C AAAAATCA C TGGC AAATG GG TT . AT A . TTATTTATTTA TTTATTTTTT . C T GA AAAGGGGGGGGGGGGGGG TA A C T AGAAAGA G TA A G T CG AA CTA CA TAT T T TT T ATA G C C TT TTTC TTC
blockSeqs : TAA . TTTTT G . T . . . . TA . TTTA T . . . . . . . . . . . AAAATCA . . TGA . T . TT . . . TT . . T CC . T . . . AAAGG . . A . . . . T T . . . . . . . . . G . .
blockSeqs : GAA . TTTA . . C . . . . GA . TTT . . . . . . . . . . . . AATTTCA . . TG . G . TT . . . T . . T CA . T . . . AGA . . A . . . . . . . . . . . . . . . T . .
blockSeqs : AAA . TTTT . . C . . . . TA . TTT . . . . . . . . . . . . ATTTTC . . TG . T . TT . . . T . . T TC . T . . . AGA . . A . . . . . . . . . . . . . . . . . .
blockSeqs : AAA . TTTT . . C . . . . TA . TTT . . . . . . . . . . . . AATTA . . TT . T . TT . . . T . . C . . T . . . AGA . . A . . . . . . . . . . . . . . . . . .
blockSeqs : AAA . TTT . . C . . . . TA . TA . . . . . . . . . . . . TTTCA . . G . T . T . . . T . . T . . T . . . AGG . . C . . . . . . . . . . . . . . . . . .
blockSeqs : AAT . TTG . . A . . . . TA . TT . . . . . . . . . . . . A . . A . . . . . . . . . . . . . AAT . . . . . . . . . . . . . . . . . . . . .
blockSeqs : AAA . ATG . . C . . . . TG . T . . . . . . . . . . . . A . . . . . GG . . . . . . . . . . . . . . . . . . . .
blockSeqs : CAA . ATG . . C . . . . C . T . . . . . . . . . . . . A
blockSeqs : AC . TG . . C . . . . . . T . . . . . . . .
blockSeqs : A . TG . . . . . . . . . T . . . . . . .
blockSeqs : . . A . . . . . .
blockSeqs : . . G . .
blockSeqs : .
blockSeqCons : TTN******* ** **** ATCA********** TG******* *** TT T********* ** T***
originalCons : TATACTGAGCAAAAAAAGTTTAGCAACATTTT--T-----TTTG-ACCTCTTGAAAATATTTCA-CAATTGTAAAAA----TT--CAAAAAA--TC-TAAACATGCATG----TC-TTACACTGTGTTTCAAACTTAATTTTCATTGATAAATG--ACATCTTAA------T---TTTT---CAGTATAACCA----AAGGA-CGTTTTCG-CAAAA-TTGAAGTTTG-AAAAT-TC----CAATGG----AATAACTCTCCATA-GGAAA---A-A------A-------TTCG-CAAAA----AA------TG-AATA--AACAACATTTTTGGTATCCCCAGTTAGCAACTTCCACTCATCAAACGAGA-TTTTTTGG---CAAAAATTAGCAATGAA-TAGGAAAACA-CACATT-----------TTTG--------TTGAAAA--ACTCCCCT-TTTCACTCTTTCCTTTTCG------------------GGCTCA--T-T-TTT-T-ATGCCAGAAAAG--AGGCAACA-GGAAAA--ACAATCCTTCGTTTTAAAGTT-TATGGTTGTTTT-AAACGAAAATC--GTTATCAAAA--TCATT---CTAAGAGTGATAAATATG--TTA---AC-ATTTT-GCC--TCTGAAAAGCGTA-TAT---AATTTTTCAACCTT-TTG-TTGCTAAA-C--TT----TTTT---ACTCAGT
finalCons : TATACTGAGCAAAAAAAGTTTAGCAACATTTT--TTTN-------ACCTCTTGAAAATATTTCA-CAATTGTAAAAA----TT--CAAAAAA--TC-TAAACATGCATG----TC-TTACACTGTGTTTCAAACTTAATTTTCATTGATAAATG--ACATCTTAA------T---TTTT---CAGTATAACCA----AAGGA-CGTTTTCG-CAAAA-TTGAAGTTTG-AAAAT-TC----CAATGG----AATAACTCTCCATA-GGAAA---A-AATCA----------TTCG-CAAAA----AATG-------AATA--AACAACATTTTTGGTATCCCCAGTTAGCAACTTCCACTCATCAAACGAGA-TTTTTTGG---CAAAAATTAGCAATGAA-TAGGAAAACA-CACATT-----------TTTGT---------GAAAA--ACTCCCCT-TTTCACTCTTTCCTTTTCG------------------GGCTCAT---T-TTT-T-ATGCCAGAAAAG--AGGCAACA-GGAAAA--ACAATCCTTCGTTTTAAAGTT-TATGGTTGTTTT-AAACGAAAATC--GTTATCAAAA--TCATT---CTAAGAGTGATAAATATG--TTA---AC-ATTTT-GCC--TCTGAAAAGCGTA-TAT---AATTTTTCAACCTT-TTG-TTGCTAAA-C--TT----TTTT---ACTCAGT
Alignments
lowQualScore : 22222222222 2222222222 111 3333333 1111 222222222 22222222222 2222222222222 11 333333333333333333 2222222 111 11 11
lowQualScore : 333 777 11111111111 5 6666 777 44 3 6666 3 3 44 0 2222222222 333 7777 3 3 3 3 3 7777 8888 4 4 4 55 4 7777777 5 0000 666666666 66 55 888 0 66 5 0 5 77777777777 9999999999999 5 5 2 88 222222222222222222 9999 4 4 4 5555555 0 4 66 0 1 4 5 66 66 0 222 00 777 4 4 66 4 777 0 4 4 4 55 9999 777 0
lowQualScore : ... ... ........... . .... ... .. . .... . . .. . .......... ... .... . . . . . .... .... . . . .. . ....... . .... ......... .. .. ... . .. . . . ........... ............. . . . .. .................. .... . . . ....... . . .. . . . . .. .. . ... .. ... . . .. . ... . . . . .. .... ... .
lowQualScore : 111 999 99999999999 3 1111 000 22 1 5555 3 7 66 4 2222222222 888 1111 3 3 3 3 3 7777 5555 0 0 0 55 0 9999999 0 6666 555555555 99 11 888 5 55 0 1 0 11111111111 6666666666666 0 7 0 44 888888888888888888 7777 4 4 4 7777777 1 4 11 1 8 4 0 11 11 1 222 66 888 4 4 11 4 888 8 4 4 4 00 4444 888 2
consensus : TATACTGAGCAAAAAAAGTTTAGCAACATTTT---T------TTG--ACCTCTTGAAAATATTTCA-CAATTGTAAAAA----TT--CAAAAAA--TC-TAAA----CATGCATGTC-TTACACTGTGTTTCAAACTTAATTTTCATTGATAAATG--ACATCTTAA------T---TTTT---CAGTATAACCA----AAGGA-CGTTTTCG-CAAAA-TTGAAGTTTG-AAAAT-TC----CAATGG----AATAACTCTC-CATAGG-AA-A--A-AA----T--CATTCG-CAAAA----AA------TG-AATA--AACAACATTTTTGGTATCCCCAGTTAGCAACTTCCACTCATCAAACGAGA-TTTTTTGG---CAAAAATTAGCAATGAA-TAGGAAAACA-CACATT-----------TTTG---------T---GAAAAACTCCCCT-TTTCACTCTTTCCTTTTCG------------------GGCTCA--T-T-TTT-T-ATGCCAGAAAAG--AGGCAACA-GGAAAA--ACAATCCTTCGTTTTAAAGTT-TATGGTTGTTTT-AAACGAAAATC--GTTATCAAAA--TCATT---CTAAGAGTGATAAATATG--TTA---AC-ATTTT-GCC--TCTGAAAAGCGTA-TAT---AATTTTTCAACCTT-TTG-TTGCTAAA-C--TT----TTTT---ACTCAGT
Reference ( family-7623 ) : TATACTGAGCAAAAAAAGTTTAGCAACATTTT---T------TTN--ACCTCTTGAAAATATTTCA-CAATTGTAAAAA----TT--CAAAAAA--TC-TAAA----CATGCATGTC-TTACACTGTGTTTCAAACTTAATTTTCATTGATAAATG--ACATCTTAA------T---TTTT---CAGTATAACCA----AAGGA-CGTTTTCG-CAAAA-TTGAAGTTTG-AAAAT-TC----CAATGG----AATAACTCTC-CATAGG-AA-A--A-AA----T--CATTCG-CAAAA----AA------TG-AATA--AACAACATTTTTGGTATCCCCAGTTAGCAACTTCCACTCATCAAACGAGA-TTTTTTGG---CAAAAATTAGCAATGAA-TAGGAAAACA-CACATT-----------TTTG---------T---GAAAAACTCCCCT-TTTCACTCTTTCCTTTTCG------------------GGCTCA--T-T-TTT-T-ATGCCAGAAAAG--AGGCAACA-GGAAAA--ACAATCCTTCGTTTTAAAGTT-TATGGTTGTTTT-AAACGAAAATC--GTTATCAAAA--TCATT---CTAAGAGTGATAAATATG--TTA---AC-ATTTT-GCC--TCTGAAAAGCGTA-TAT---AATTTTTCAACCTT-TTG-TTGCTAAA-C--TT----TTTT---ACTCAGT
gi|1 : AAAAAGTTTATTAACATTTTC--T------TTA--ATCCCTTGAAAACATTTGA-CAATTGTAAGAA----AT--AAAAAAAAATG-TGAA----CATGCATGTC-ATACACTGTGTTTCAAACTTGATTTTCATTGATAAATG--ATATCCTAA------T---TTTT---CAGTATAATCA----AAAAA-TGTTTTCG-CAAAA-TTGAAGTTTG-AAAAT-TC----CAATGGTCCTAA-AACTCTC-CATAGG-AA-A--A-AAC---T--CATTCG-CAAAA----AAAACAAATT-AATA--CACAGCATTGTTGGTATCCCCAGTTAGCAACTTACACTCATAAAACGAGA-TTTTTGGGGGGCAAAAAG-AGCAATGAA-TAGAAAAAAAATACATT-----------TTTG---------TTAAAAAAAACTCCCCT-TTTTACGCTTTTCTTTTTG------------------GGCTCAGTT-T-TTT-C-ATACCAGAAA----AGGCAACA-GGAAAC--ACAATCCTTCGTTTTAAAGTG-TATGGCTGTTTT-AAACGAAACCC--GTTATCAAAA--TCATT---CTACGAGTGATAAAAATG--TTA---AC-ATTTT-GCT--TGTAAAAAGCGCA-TAT---AATTTTTCAACCTT-TTG-TTGCTGAA-C--TT----TTTT---
gi|10 : tacatgtactgttttttATGCTGAGCAAAAAAGGTTTAGCAACATATT---T------T-G--ACCTCTTGAAAATATTTCA-TAATTGCAAAAA----AT--TTAAAGA--TC-TAAA----CGTGCGTGTC-TTACACTGTGTTTTAAACTTAATTTTCATTGATAAATGACACATCTTAATT----T---TTTT---CGATATAACCG----AAGGA-CGTTTTCG-CAAAA-TTAAAGGTTG-AAAAT-TCTGGACAATGG----AACAACTCTC-AATAGGAAA-A--A-AA----T--CATttta
gi|11 : ATACTGAGTAAATTAAGTTGAACAACATTTT---TCATTTTTTT--ATCACTTCAAAATATTTCA-CAATTCTAAAAG----TT--CAAAAAA--TC-TAAA----CATGCATGTC-TTACATTGTGTTTCAAAC----TTTCCATTCATAGATG--ACATCTTAA------TTTATTTT---CAGTATAAGCA----AATGA-CGTTTTCG-CAAAA-TTAAAGTTTG-AAAAT-
gi|12 : tataCTGAGTAAAAGAAGTTTAGCAACATTTT---T------TTT--ACCTCTTGAAACTATTTCA-CAATTGTAAATA----TTAACAAAAAA-----TAAA----GATGCATGTC-TTACTCTGTGTTTCAAACTTAATTTTCATTCATAAATG--ATATCTTGA------T---TTTT---CAGTATAATCA----AAGGA-CGTTTTCG-CAAAA-TTGAAGTTTG-AAAAT-TC----CAATGG----ATTAACTCTC-CATAGG-AA-A--GCAA----TTCCATTCagtatatcttatgttcatatccgcgaaa
gi|13 : TACTGAGTAAAAAAAGTTT--------TTT---T------TTA--ACTCCTTGAAAATATTTCATCAATTGTAAAAAAAAATT---AAAAAA--TC-TAAA----CATGCATGTCTTTACACTGTGTTTCAAACTC-ATTTTCATTAATAAAT---ACATCTTAATT----T---TTTT---CAGTATAACCAATTTAAAGATCG-TTTCG-CAAAATTTGAAGATGA-GAAAT-TC----CAATG
gi|14 : ataatTCCTT--TTTTCG------------------GGCTCA--T-T-TTTCT-ATGCCCGAAAAG--A--CAAAA-GGGAAA--ACCATCCTTAGTTTTTAAGTT-GATGATTGTTTT-AAGCGAAAATC--GCTATCAAAA--TCATT---CTAAGAGTG---AATATGCATAA---AC-ATTTT-GCT--TCTGAAAAGCGCA-TGT---AATTTTTTAACCTT-TTG-GTGCTAAA-CG-TT----TTTT---ACTTAata
gi|15 : AAAATCCGGTCATCAAAAAATCATTT--CTAAGAGTGATAA-TATG--CTATATAT-ATTTTTGCC--TCTGAAAAGCGTATTAT---A----TTTAACC-T-TTG-TTGCTAAA-CTTTT----TTTT---ACTCAagtaagtc
gi|16 : TATACTGAGTAAA----GTTTAGCAACATTTT---T--------A--AACTCTTCAAAATATTTAA-GAATTGTAAACA----TT--CAAAAAA--TCTTAAA----TATGCCTGTag
gi|17 : aTTTTCG------------------GGCTCA--TAT-TTC-T-ATGCCAGAAAAG--A--CAAAAGGGAAAA--ACAATCCTTAGTTTTAAAGTT-GATGGTT
gi|18 : TGAGCAAAAAAAGTTAAGCAGCATTTG---T------TTG--ACCTCCTGAAAATATTTTA-CAATTG-AAAAA----
gi|19 : AAAAAAAGTTTAGCAACATTTT---T------TTTTTATCTCTTGAAAATATTTCA-CAATTGTAAA
gi|2 : TGTACTAAGCAAAAAATGTTTAGAAACATTTTATTT------TTT--ACCTCTTGAAGATATTTCA-CAATTGTGAAAA----TT--CAAAAAC--TC-TAAA----CATGCATGTC-TTACACTGTGTTTTAAACTGAATTTTCATTGATAAATG--TCATCTTAA------T---TTTT---CAGTATAACCA----AAGGA-CGTTTTCG-CAAAA-TTGAAGTTTA-AAAAT-TC----CAATGG----AATAACTCTCATATAGC-AA-A--A-----------ACTCG-------------------G-AATA--AGCAACATTTTTGGTATCCCAAGTAAGCAACTTCCACTCATCAAACGAGA-TTTTTTGG---CAAAAAATAGCATTCAA-TAGGAAAACA-CAAATTTTATTTATTTATTTGTTTATTTTTT---GAAGAACTCCCTT-TCTCACTCTTTGATTTTCT------------------AGCTCA--T-T-TTT-T-ATGCCAGAAAAGAAAGACAACA-AGATAA--ACAATCCTTCGTTTTAACGTT-TACGGTTGTTTT-AAACGAAAGTC--GTTATCAAAA--TCATT---GTAACAGGGATAAGTATGT-TTT---TC-ATCTT-GCC--TCTGAAAAGCGTA-TAT---AATTTTTCAACCGT-TTG-TTGCTAAA-C--TT----TCTT---ACTCAGT
gi|3 : CTGAGCCAAAAAAGTTTTGCAACATTTT---T--------G--ACCTCTTGAAAATATTTCA-CAAATGTAAAAA----TT--CGAAACA--TC-TAAG----CTTGCATGTC-TTACACAGTGTTTCAAACTTAATTTTCATTGATAAATG--GCATATAGA------TA--TTTT---CAGCATGTCC-----AAGGA-CGTTTTCG-CAAAG-TTGAAGTTTG-AAAAT-TC----GAATGG----AATAACTCTC-CATAGG-AAGA--A-AA----T--TATTCGCCAAAA----AA------TG-AATA--AATAATATTTTTCGTATCCCCAGTTAGCAACTTCCACTCATCAAACAATA--TTTTTGG---CAAATATTAGCAATGAA-TAGAAAA--A-CACATT-----------TTTG---------T---GAAAAATTTCCTT-TTTCACTTTCTCCTTATCG------------------GGCGCA----T-TTA-T-AAACCAGAA-----AGACAAGA-GGATAA--ACAATCTTTCGTTTTA---TT-TATGGTTCTTTT-AAACAAAAATC--GTTATCAAAT--TAATT---TTAAGACTGATAAATATG--TTA---AC-ATTTT-GCC--TCTGAAAAGCGTA-TAT---AATTTTTCAACCTT-TTA-TTGCTTAA-CT-TT----TTTT---ACTTAGT
gi|4 : TAGTGAGCAAGAAC-GTTTAGCAACATTTA---T--------G--ACCTCTTGAAAAGATTTCA-CAATTGTAAAAA----TT--AAAAACA--T--TAAA----CATGCATGTC-TTACATTGTGTTTCAAACTTAATTGTCATTGATAAATG--ACAT-TTAAAAAAAAT----------CAGTATGACCA----AAGGA-CGTTTTTTTCAAAA-CTGAAGTTTG-AAAAT-TT----CAGTGG----AATAACTCTC-AATAGG-AA-A--A-AAAAAAT--CATTCG-CAAAA----AA------TG-AATA--AACAACATTTT-GGTATCCCCAGTTAGCAACTTCTACTCATCAAACGAGA-GTTTTTGC---CAAAAATTAGGAGTGA--TAAGAAAACA-CACATT-----------TCTG---------T---GAAAAACTTCCCT-TTTCACTCTTTCATTTTCG------------------GGCTCA--T-T-TTT-T-ATGCTAGATAAG----GCAACA-GGAAAA--ACAATCCTTCGTTTTAAAGTT-TATGGTTGTGT--------AAATC-----AACAAAA--T---T---CTAAGAGTGATAAATATG--TTA---AC-ATTTT-GCC--TTTGAAAAGAGTT-TAT---AATTTTTCAAACTT-TGG-TTGCTAAA-C--TT----TTTTTTCACTCAa
gi|5 : TTTCA-CAATTCTAAAAG----TT--CAAAATA--TC-TAAA----CATGCATGTT-TTATACTGTGTTTCAAGCTTAATTTTCATTCATAGATG--ACATCTTAA------T---TTTTTTTCAGTATAACCA----AAGGA-CGTTTTCG-CAAAA-TTAAAGCTTG-AAAAT-TT----CAATGG----AATAACTATT-CATACG-AA-A--A-AAAAA-T--CATTCA-CAAAA----AAAAA---TG-AATA--AACAACATTTTTGGTATCCCCAATTAATGTCTTCCACTCATCAAACGAAA-TGTTTTGG---CAA----------TCGA-TAGGAAAACG-CACATT-----------TTTG---------T---GAAAA--TCTTTT-TTTCACCCTATTCTTTTCA------------------GGCTCA--T-TATTT-T-ATGCCAAAAA-----GGCTACA-GGAAAG--GCAATCTTTCGTATTAAAGTT-CATGGTTGTTTT-CAACGAAAATC--GTTATTATGA--TTATT---TCAAGAGTGATAAATATG--TGA---ACTATTTT-GCC--TCTGAAAAGCGTA-TAC---GATTTTTCAACCTT-TTG-TTGCTAAA-G--TTTTTCTTTT---ACTCAGTt
gi|6 : acTATCTTGAGCAAAC----TTTAGCGACTTTTT---T------TTTTTAC-TCTTTAATATATTTTAGCAATTGTAAAAA----TC-----AAAT--TG-TAAA----CATGCATGTG-TTA-ACTGGTTTTCAAACTT---TTTCATTGA-AAATG--ACAT-TTAG------T---TTTTTT-C-GTATAAA-A----AAGGA---TTTCCG-AAAGA-TT-AAGTTTG-AAAATCTC----CAATGA----AGC--CTCGC-CATAGG-AA-A--A-AATTT-T--C-TTCC-CAAAATGGCAA------TGAAATAGGAAC-ACACTTTTTGTat
gi|6 : aAAA-TTTTCTTC---CCAAAAT-GGCAATGAAATAGGAA--CA-CAC-TT-----------TTTG---------T---GAAAA-CTCCCTTCTTTCACTTCTT--TTTTCG------------------GGCTC-----T-TTT-T--TGCT-GATAAA--AGGCACTA-AGAAAATAGTAAACTTTTGTTT-ACAGTTGTAAGGTTGTTTTTAAACGAAAATT--GTTATGAGAA--TCATTCTACTAAGAATGATAAATGCG--TTA---AC-A-TTT-GCCTTTTTGAAATGCGTG-TAT----ATGTTTCAACTTTGTTGCTTGTTAAA-C--TT----TTTT---ACT-AGTgaaaactcccttctttcacttcttttttcgggctcttttttgctgataaaaggcactaagaaaatagtaaacttttgtttacagttgtaaggttgtttttaaacgaaaattgttatgagaatcattctactaagaatgataaatgcgttaacatttgcctttttgaaatgcgtgtatatgtttcaactttgttgcttgttaaacttttttactagtcat
gi|7 : atatcttgagcaaactttagcgactttttttttttactctttaatatattttagcaattgtaaaaatcaaattgtaaacatgcatgtgttaactggttttcaaactttttcattgaaaatgacatttagtttttttcgtataaaaaaggatttccgaaagattaagtttgaaaatctccaatgaagcctcgccataggaaaACTGAGTAAAAA--GTTTAGCAACATTTT---T------ATG--ACCTCTTGAAAATATTTCC-CAATTATAAAAA----TT--CAAAAA---TC-TAAA----CATGCATGTC-TTACACTGT--TTTAAACTTAATTTTCATTCATAAATG--ACATCTTAA------T---TTTTT--CAGTATAACAA----ATGGA-CGTTTTCG-CAAAA-TTGAAGATTC-AAAAT-TG----CAATGG----AATAACTCTC-CATAGG-AA-ACAA-AA----TTTCATTCG-CAAAA----AA------TT-AATT--AACAACATTTTTGGTATCCCCAGTTAGCAACTTCTACTCATCAAACGAGATTTTTTTGG---CAAAAATTAGCAATGAA-AAGGAAAACC-CACcat
gi|8 : TCAAACAAGA-TTTTTTGG---GAAATATTAGCAATGAA-TAGGAAAACA-CACATT-----------TTTG---------TT--GAAAAACTCTCCT-TTTCAC-------TTTTGGAAAGGGGGGGGGGGGGGGGGGGCA--T-T-TTT-TTATGCCAGAAAAA----TCAACA-GGAAAA--------------------GTT-TATGGTTGTTTT-ACACCAAAATC--GTTATCAATA--TCATT---CTATGAGTGATAAATATG--TTA---AC-ATTTT-GCC--TCTG-AAAGCATA-TATATAAATTTTTCAGCCCT-TTG-TTGCTAAACC--TT----TTTT---ACTCAGTc
gi|9 : tttagtgtgaccccaatattttcgtatccttTATACTAAGCAAAACAAATTTAGCAACATTTT---T------ATG--ATCTTTTGAAAATATTTCA-CAATTGTAAAAA-----T--CAAAAAA--TC-TAAACATGCATGCATGTC-TT-CACTGTGTTTCAAATTTGA-TTTCTTTGATAAATG--ACATCTTAAT-----T---TTTT---CGTTATAACCA----AAGGA-CGTTTTGG-CAAAA--CGAAGTTTGAAAAAT-TC----TTATGG----TTTACCTCTC-CATAGG-AA-A--A-AAATT-T--CATTCG-CAAAA----AA-------A-AATA--AACAATATTTTCGGatacc