lowQualScore : 111111111111111111111111111111111111111111 111111111111
lowQualScore : 22222222 1111111111 111 222222222222222222 6666666666666666666666666 1111111111 11 1111111 11 88888888888 1111111 11 33333333 333333333333333 222 888888888888888888888888888888888888888888 1 11 22 111 1111 111111 11 22222222 22222 11111 1111 111 222 1111 888888888888 1111 2222 11 22222 2 000000000000 11 222 1 1 33 1111111 1 222 1 66666666 1 111111 111 22222 11 55555555555555555555555 11 1 111 1 444 1 1 11111 222222 11111 1111 11 66666666666666666666666666666666666666666666 1 111 11 44 11 1 1111 444 3333 333 55555 1 444444444444444
lowQualScore : 44444444 777 4 4 4 4 8 4 55 8888888888 3 3 5555 55 000 666 3 3 1 55 3 6 333333333333333333 44 88888 1 2 55 3 3 4 66 5555555555555555555555555 5 4 4 8 9999999999 8 99 66 8888888 5 5 22 77777777777 1 888 8 5 1 3333333 0 6 99 22 6 0 77777777 6 9 999999999999999 222 8 333333333333333333333333333333333333333333 5 11 22 111 4444 99 5 222222 5 1 6 6 00 5 5 00000000 44444 44444 2222 5 0 1 4 6 6 222 1 3 3 3 1 888 5 6 7777 1 8 8 222222222222 9999 2 1111 33 99999 0 3 777777777777 33 000 3 3 3 3 66 9999999 3 333 3 6 77777777 3 0 3 5 444444 2 111 88888 00 5 77 4 11111111111111111111111 33 0 777 0 777 0 0 33333 333333 1 33333 7777 8 11 99999999999999999999999999999999999999999999 0 8 0 777 33 33 1 33 0 8888 111 3 7777 333 88888 5 444444444444444
lowQualScore : ........ ... . . . . . . .. .......... . . .... .. ... ... . . . .. . . .................. .. ..... . . .. . . . .. ......................... . . . . .......... . .. .. ....... . . .. ........... . ... . . . ....... . . .. .. . . ........ . . ............... ... . .......................................... . .. .. ... .... .. . ...... . . . . .. . . ........ ..... ..... .... . . . . . . ... . . . . . ... . . .... . . . ............ .... . .... .. ..... . . ............ .. ... . . . . .. ....... . ... . . ........ . . . . ...... . ... ..... .. . .. . ....................... .. . ... . ... . . ..... ...... . ..... .... . .. ............................................ . . . ... .. .. . .. . .... ... . .... ... ..... . ...............
lowQualScore : 77777777 888 4 0 0 0 0 7 77 8888888888 6 6 4444 00 000 444 6 6 4 00 6 7 111111111111111111 66 33333 7 8 00 6 6 0 11 4444444444444444444444444 7 4 4 9 4444444444 9 66 22 5555555 0 0 66 55555555555 4 888 2 7 4 8888888 6 7 22 00 7 8 00000000 7 8 333333333333333 000 0 000000000000000000000000000000000000000000 0 00 44 777 2222 22 7 666666 7 7 0 7 33 4 7 77777777 33333 33333 1111 7 1 7 0 7 7 333 7 2 0 0 4 777 7 7 0000 4 0 0 000000000000 5555 5 2222 33 33333 7 7 222222222222 88 000 2 3 3 0 77 7777777 3 333 3 7 00000000 2 0 0 6 555555 5 777 66666 77 7 99 0 22222222222222222222222 88 0 555 0 555 0 0 00000 000000 4 66666 0000 0 00 44444444444444444444444444444444444444444444 8 0 0 555 88 22 2 88 0 5555 222 2 0000 555 55555 0 000000000000000
consensus : AATAGAAT-A-TN--ATTTAT---TTCCA-ATT-T-TG-GACC-CATTAAGGGTATTCAGAAC-AAA-----TGTA-AC-AT-GA-A--TAT--TG---A---AAT-AAAACAT-AACATA--AA-C-AAA-------A----------A--TA-----AACAGGGGA--AGAG-AT-CCAAATGAT-AGCACT--CAGGTAAAAN---A-------GTACA--T-G-TACACCATGT-ATT-AT-AA----------TAAT-ATT-GTATCAATTATTAC------ATTG-AT-AAA-TTGCA-A-A-A-TGTTACAATAGTAGA---TGGCACATT-ATATTCA-GGTATATTATATTCAGGTATAT-CCT--GCGATAACATT-GCATCTT-TTCTCATGACATT--TATATATGTAGTCAGCAAGACGAGTTA-TTATAT------T--------ACCGTC---TTC-ATT------A-G---------TGACAT-----------CA-----ATCTATCTCTATTT--GAAA-GCAAG---GAAAA----GTT--GG-AA--T---T-TTCATCTATCATGTGATTTACAA-ATC-CTTGTCTGT-ATTGTT--------CAT-----AAGTT-----GG----GCAT-TCAAACATAAAATGNA-TTTCA-TCTTCTACG-GAGTCTGAATTACAAAGTTTACATTTTCGGTCTGCTACA-GGGA-CATTTTTGTA-TCTGCCAATTTCAATTTC----TAGCT-T-ATGTGAACTGAT--GGAAGCT--TGTGAAACATT---NAAGAATATGGG-TTTTACTAT-GGTAGAAAAGTA-TTTTCCCTTGGAAAG----AG-CTTCTTTTGAAT--AATCCATATGTTCGTAACTTGCCCTTTT-CATT-TNCAGCACATTCTGACAAATTATTTCGC-ATATAT-AATAAA---TC-TTTTTCTAAG----T--TTATTAAACAC-TTTTGATTG-AGA-TCTGAAGAAA---AGATG-----TT-ATCGCA-GGAT--ATNC-------------C--TTAGT-GATTCA--GC-AAAAAA---TAAAC-ACTGC--TCAACCAACAATTC-TTTTTGTTA-TCAT--T--CA------AAAT-CA--TATT----TT-C--TTGA-AGTGCACTCTCG-AGC-AAAGTATC---------------GTTTGATTTATG-AATGT-GTT---GTAAA--TA--TTTAATA--GT-ATTGG-A--TAAGGTTTCGA-ATATATAATGGATAACCTACCTAATTCCCCCACCATTAACTGCATAGAGTTTGAANNCTTTCTTATGTACA
Reference ( gi|1 ) : AATAGAAC-A-TA--ATTTAT---TTCCA-ATT-T-TG-GACC-CATTAAGGGTATTCAGAAC-AAA-----TGTA-AC-AT-GA-A--TAT--TG---A---AAT-AAAACAT-AACATA--AA-C-AAA-------A----------A--TA-----AACAGGGGA--AGAG-AT-CCAAATGAT-AGCACT--CAGGTAAAAT---A-------GTACA--T-G-TGCACCATGT-ATT-AT-AA----------TAAT-ATT-GTATCAACCATTAT------ATTG-AT-AAA-GTGCAAAAA-AATGTTACAATAGTAGA---TGACACATT-ATATTCA-GGTATATTATATTCAGGTATAT-CCT--GCGATAACATT-ACATCTT-TTCTCATGACATTTATATATATATAGTCAGCAAGACAAGTTA-TTATAT------T--------ACTGTC---TTC-ATT------------------T----------------CA-----ATCTATCTCTAGTT--GAAT-GCAAG---GAAAA----GTT--GG-AA--T---T-TTCATCTATCATGTGATTTACAA-ATC-CTTGTCTAT-ATTGTT--------CAT-----AAGTT-----GG----GCAT-TCAAACATAAAATGTA-TTTCA-TCTTCTATG-GAGTCTGAATTACAAAGTTTACATTTTCGGTCTGCTATT-GGGA-CATTTTTGTA-TCTGCCAATTTCAATTTC----TAGCT-T-ATGTG------------AGTT--TGTGAAACATT---GAAGAATATGGGGTTTTACTAA-AACAGAAAGGTATTTTTCCCTTGAGAAGCTTGAGCCTTCTTTTGAAT--AATGCCTATGTTCGTAACTTGCCCTTTT-CATT-TTTAGCAC--TCTGACAAATTACTTTGCCATATAT-AATAAA---TC-TTTTTCTAAG---TTCATTATTAAACAC-TTTTGATTG-AGA-TCTGAAGAAA---AGATG-----TT-GTCGCA-GGAT--ATGC-------------C--CTAGT-GATTCA--GT-AAAAAA---TAAAC-ACTG---TCAACCAACAATTC-TTTTTGTTA-TCAT--T--CA------AAAT-CA--TATT----TT-C--TT---AGTGCACTCTCA-AGC-AAAGTATC---------------ATTTGATTTATG-AATGT-GTT---GTAAA--TATTTTTAATA--GT-ATTGG-A--TAAGGTTTC---ATATATAATGGAT-A-TTACCTA--CCCCCCACCCCTAACTGCATAAAGTTTGAAGGC--TCTTATGTACAC
gi|3 : AATAGAAT-A-TC--ATTTAT---TTTCA-ATT-T-TG-GATC-CATTAAGGGTATTCAGAAC-AAA-----TGTA-AC-AT-GA-A--TAC--TG---A---AAT-AAAACAT-AACATA--AA-CTAAA-------A----------A--TA-----AACAGGGGA--AGAG-AT-CCAAATGAT-AGCATT--CAGGTGAAATTTAA-------GTGCA--T-G-TACATCATGT-ATT-AT-AT----------TAAT-ACA-ATATCAATTATTAC------ATTG-AT-GAA-GTGCAAATA-A-TGTTTCAGTAGTAGA---TGCCACATT-AT----------------ATTCAAGTATAT-TCT--GCGACAACATT-GCATCTT-TTCTCATGACAATTAT-T-TATGTAGTCAGCAAGACAAGTTA-TCATAT------T--------ACTGTC---TTC-ATTTGACATAAGCCATA----T----------------CA-----ATCTATCTCTATCT--AAAA-GCAAG---GAAAA----GTT--GA-AA--T---T-TTCATCTATCACGTAATTTGCAA-ATC-CTTGTCTGT-ATTGTT--------CCT-----AAGTT-----GG----GCAT-TCAAACATAAAATGAA-TTTCA-TCTTCTACT-GCGTCTGGATTACAAAGTTTACATTTTCGATCTGCTTCA-GGGA-CATTTTTGTA-TCTGCCAATTTCAATTTC----TAGCT-T-ATGTGAACTGATGCGGAAATT--TGTGAAACATT---TAAGAATATGGGGTTTTACTAT-GACAAAAAGGTATTTTTCCTTTGAAAAG-------CTTCTTTTGAAT--AATCCGTATGTTCGTAA
gi|8 : tagAATAGAATTA-TAGAATTTAT---TTCCA-ATT-T-TG-GACC-CATAAAGGGTATTCAGAAC--------------------------TAT--TG---A---AAT-AAAACAT-AACATA--AA-C-AAA-------ACAAAAAAAAAA--TA-----ATCAGGGGA--AGAG-AT-CCAAATGAT-AGCACT--TAGGTAAAAA---A-------GTACACAT-G-TACAACATGT-ATT-AT-AA----------TAAT-ATT-GTATCAATTATTAC------ATTG-AT-AAA-TTGC-----------TACAATAGTAGA---TGGCACATT-ATATTCA-GGTATATTATTTTCAGGTATAT-CCT--GCGATAACATT-GCATCTT-tgtacatctccgatgtataaaaagt
gi|10 : agAATAGAAT-A-TT--ATTTAT---TTCCA-ATT-T-TG-GACC-CATTAAGAGTATTCAGAAC-AAA-----TGTA-AC-AT-GA-A--TAT--TG---A---AAT-AAAACAT-AAAATA--AA-CAAAA-------A----------A--TA-----GAGAGAGGG--AAAA-TT-CCAAATGAT-AGCACT--CAGGTGAAATTTAA-------GAACA--T-G-TACACCATGT-ACC-AT-AT----------TAAT-AAA-ATATCAATTATCAC------ATTG-AT-AAA-GTGCAAAAACAATGTTGCAATAGTAGA---TGGCACA
gi|13 : ataaaAATAGAA----------TTAT---TTCCA-ATT-T-TT-GGCCACA-TAAAGGTATTCAGAAC-AAA-----T-T--AC-AT-GA-AATCAT--TG---A---AAT-AAAACAT-A----A--AA-C-AAA-------A----------A--TA-----AACAGGGGA--AGAGAATGCCAAATGAT-AGCATT--CAGGTAAAACGA-A-------GTACA--T-GTTACA-CATGT-ATT-ATAAA----------TA---ATT-GTATCAA-TA-TAC------ATTGAAT-AAA-TTGCACAAA------TAC--------------CCACATT-ATACTCAGGGTAT
gi|17 : aaaggaAATAGAAT-AATA--ATGTAT---TTC-A-ATT-TATG-GACT-CATTAAGGGTA-TCAGAAC-CAA-----TGTA-ACAAC-GT-A--TAT--TGCCAA---GAT--AAACAT-AACAT---AA-C-AAA-------A----------A---A-----TACAGGGGA--AGAG-AT-CCAA
gi|21 : aaagAAGAGAAT-A-TC--ATTTAT---TTCCA-ATA-C-TG-GACC-CAT------TATTCAGAAC-AAA-----TAT--TT-AT-GA-A--TAT--TG---A---AATAAAAACAT-AAAATA--GACC-AAA-------A----------A--TA-----AA
gi|18 : tagAAC-AATG--ATTTATCCTTTCCA-ATTAC-TGTGATCTCCTTAAGGGTATTCAGAACAAAA-----TGTA-AC-AT-AAGA--CATGATG---ATATAAT-AACGCATGAAAGTACTAA-C-AAAT------AT---------A--TA-----AACAG
gi|5 : -TA--ATTTTT---TTCCATATT-T-T------------------TTTGGAAC-AAAATTGGTGAACAC-ATCGG-A--CAT--TGT--G---AAT-------------TA--AA-C-AAA-------A----------A--TACAGATAACAGGGAA--AGAG-AT-CCAATTGAT-AGCACTTTCAGGTCAAA----A-------GGA--------------ATGT-ATT-ATCAA----------TGATCATTAGTATCAATTATAATGGCGGCATTG-ATTAAA-TTGCC-------CTTTA-AATAGTAGAGAATGGCACATT-AGAT----GATCC-TTCTAGT--GGTATATGCCTTGGCGATAACATTCGCATGTCGTTCTCATGACATT---A-ATATGTAGTCAGCAAGACAAGTTAGTTATAT------TAGCTACTGATTGTCGTTTTCTATTATGACCATGAAGGCCATAT----------------CA-----ATCTATCTCTACTTTTGAAGAGCAAGTTCGGAAATATTGTTACGGTAA--TGTAT-TTAATC-ATCATGTGATT-ACAA-ATC-CTTGTCTGT-ATTGT---------CATTGTGAAGGTT-----GG----GCAT-TCAA-CATAAAATGTACTTTCA-TCTTCCTCGCGAG----AGT--CAAGTTTTACATTT-CGGTCTGCTAACAGGGA-CATTGTTGTACTCTGCCAATTTAAGTTTC----TAGCT-T-ATGTG------------
gi|4 : atagtatatcttTTAT---TTCCA-ATT-T-TG-GACC-CATTAAGAGTATTCAGAAT-AAA-----TATA-AC-GT-GA-G--TGT--TT---A---CAT-AAA--GT-AACAT----------A-------A----------A--TA-----ACCAGGGTATCAAAG-AT-CCAAATAAT-AGCACT--AAGGTGAAAC------------T-CA----A-TACACAATGT-ATCAAT-AATCAAATTAATTAAT-ATA-ATGTCAATTATTGC------ATGT-AT-AAATATAC---AA-AGTGTTATGACAGTAGA---TGGC
gi|20 : -T-TG-GACC-CATAAAGGGTATTCAGAAC-AAA-----T--A-AC-AA-GA-A--AAT--TG---A---AAT-AAAACAT-AACATA--AA-C-AAAAAAAAATA----------A--TA-----ATCAGGGGA--AGAG-AT-CCAAATGAT-gtaaaatgccataaaattatggtatgctacttagcttatgcctgactnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatacagtgtatatattgtctgcaaaacaagttatatcactattttcatttgacataagccatataaatctatctttatttgaacgcagtgagaatttggtcttttcttctatcgtatgatttacaaattgttgtctatattgttcataagtagggcattcaaaaacaagtgaatttcatcatctacagagtctgaattacaaaatttacatttgcggtctgctacaaggacatattgtgtctgccaatttcaatttttttatagtttacgtgagctgaacagtgaaaaatatagtaatggtagaaaaatattttcccttggagagcttcttttgaatcgtccataagttcgtaacttgcgcttttaattggtaata
gi|15 : ATAAAGGGTATTCAGAAC--------------------------TAT--TA---A---AAT-AAAACAT-AACATA--AA-C-AAA-------A----------AAATA-----ATCAGGG-A--AGAG-AT-CCAAATGAT-AGCACT--TGGGTAAAA----A-------AAA-----------ACCATGT-ATT-AT-AA----------TAAT-ATT-GTATCAATTATTAC------ATTG-AT-AAA-TTGC-----------TACAATAGTAGA---TGGCACATT-ATATTC
gi|12 : g-AAA-------A----------A--TA-----ATCAGGG-A--AGTG-AT-CCAAATGAT-AGCACT--TAGGTAAAAA---A-------GTACA--TTG-TACAACATGT-ATT-AT-AA----------TAAT-AT--GTATCAATTATTAC------ATTG-AT-AAA-TTGC-----------TAAAATAGTAGA---TGGCACATT-ATATTCA-GGTATATTATATTCAGGTATAT-CCT--GCGATAACATT-GCATCTT-TTCTCATGACATT--TATATATATAGTCAGCAAGACAAGTTA-TTATAT------T--------AC
gi|22 : AGGGGA--AGAA-AT-CC--ATGATGAGCACT--TA-GTAAAAA---AAAAAAACG-ACA--T---TACACCATGTAATG-AT-AA----------TAATAATT-GT
gi|11 : ACATTTATATTTA-G-T-CACCATATTCAGGTAT-T-CTT--GCAATAACATT-TCATCTT-TTC-------------ATATATGTAGTCAGCAAGACGAGTTA-TTATATTTGACAT--------ACAGCCA--TGC-ATA------------------T----------------CA-----ATCTATCTCTATTT--GAAA-GCAAG---GAAAA----GTC--TG-CA--T---TGTTCATtat
gi|6 : AAGCGTAT-CCT--GCGATA------ACATCTT-TTCTaagttgggcattcaaacataaaatgaatttcgtcttctacaaagtctgaattttcggtctgcaacagagact
gi|4 : ttaaacacttttgattgtagatctgaTGTATATATTGTCTGCAAAACAAGTTA-T---AT------C--------ACTATT---TTC-ATT------------------TGACATAAGC-------CATATAAATCTATCTTTATTT--GAAC-GCAGT---GAGAA----TTT--GG-TC--T---T-TTCTTCTATCGTATGATTTACAA-ATT-GTTGTCTAT-ATTGTT--------CAT-----AAGTA-----GG----GCAT-TCAAAAAC-AAGTGAA-TTTCA-TCATCTACA-GAGTCTGAATTACAAAATTTACATTTGCGGTCTGCTACA-AGGA-CA-TATTGTG-TCTGCCAATTTCAATTTTTTTATAGTT-T-ACGTG------------AGCT------GAACAGT---GAAAAATATAG--------TAATGGTAGAAAAATA-TTTTCCCTTG-GA-----GAG-CTTCTTTTGAAT--CGTCCATAAGTTCGTAACTTGCGCTTTT-AATT-tagttgattcagtaaaaaaaaataaacactgcattcaaacatcaattctttttgttatcattcaaaatcatattttcttgaagtgcactctcaagcaaagtataatttgatttatgaatgtgttgtaaacatttaacagtattgggtaaggtttcaatatatataatggatacctacctaattcccccataactgcatagtttgaattttcttatgtacccca
gi|2 : ttatttccaattttggacccattaagagtattcagaataaatataacgtgagtgtttacataaagtaacataaataaccagggtatcaaagatccaaataatagcactaaggtgaaactcaatacacaatgtatcaataatcaaattaattaatataatgtcaattattgcatgtataaatatacaaagtgttatgacagtagatggcgtaaaatgccataaaattatggtatgctacttagcttatgcctgactnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatacagAAAACGAGTTA-T---AT------C--------ATCATC---TTC-ATT------------------TGACATTTAAGCCATATCA-----ATCCATCTCTATTT--GAAA-GCAAG---GATTA----GTG--GG-AA--A---T-TTCATCTATCAGGTGGCCAACAA-ATC-CTTGTCTGT-ATTGTT--------CAT-----AAGCT-----GG----ACAT-TCAAACATAAAATGTA-TTTCA-TCTTCTACA-GAGTCTGAATTACACAGTTTACATTTTCGGTCTGCTTCA-GGGA-CATTTCTGTA-CCTGCCAATTTCAATTTC----TAGTT-TAATGTGAACTGATATGGAAGTT--TGTGAAACATTTTAAAAGAATATGGGCTTTTACTAT-GGTAGAAAAGTA-TTTTCCCTTGGATAG-------TTTCTTTTGAAT--AATCCATATGTTCGTAATCTACCCTTTT-CATT-TGCAACACATTCTGACCAGTTAT-----------T-AATAAA---TC-CTTCCCTAAG-------TTAGAAAAC-----------------TCTGAAGCAA---AGATG-----TT-TTCACA-GGAT--ATTC-------------CAATT--T-GATTCA--GC-CAAGAT---TAAAC-ACTGC--TCAACCAACAATTC-GTTTTGCTA-TTAT--T--CA------ATAT-CT--TATT----TT-C--TT--------------------GAAGTGTC---------------GTTTGATTTATA-AATAT-GCT---GTAAC--TA--TTGGATA--GT-ATTGG-ATTTAAAGTTTCAA-ATATATAATGGATAA-CTACCTA--TTTCCC-CCATTAA-TGTATAGA--TTG-AGGCTTTCTTATGTACAggtaata
gi|19 : CAAG---AGAAA----ATT--GG-AAATT---T-TTCATCCATCATGTGATTTAAAATATTACTTGTCTGTAATTGCTGTGATATACATTTA--GAGTTCGCGAAG----GCATATCAAACACAAtgagagtttaccacttagatgttttcaaggaattttcaatatcataaattggtctcttagcagcagcatattctgaaat
gi|14 : -AA--T---T-TTGATTTTGAATGCAATCCACAA-AT---TTGTTGTT-GTTGTT--------TAT-----AAATA-----GACAGAACAT-TCAAGGATAAA-TTTA-CTCTAGTTTTGTATG-AAATCTAAATTACACACCCAACATTTTTGGTCTGATAAC-AGGAATATTTTT-TA-TCTGTCTATTTCAATTTC----CAAATGT-ATGAA------------AGCTAATTTGAAA-ATT---
gi|11 : GTCTGC-ATTGTT--------CAT-----AAGTT-----GG----GCAT-TCAAACATAAAATGAA-TTTCG-TCTTCTACA-AAGTCTGA--------------ATTTTCGGTCTGCAACA-GAGA-Ctttaaacatttagaa
gi|23 : acatttatatttagtcaccatattcaggtattcttgcaataacatttcatcttttcatatatgtagtcagcaagacgagttattatatttgacatacagccatgcatatcaatctatctctatttgaaagcaaggaaaaAGTTTACATTTTCGGTCTGCTACA-GGAA-CATATTTGTA-TCTGCCAATTTt
gi|16 : AGCTTCTTTTTGATTTTAATCCATATGT-CGTAACTTGCCCTTTTTCATTGTTTAGCACATTCTGACAAATTACTTCGCCATATAT-TATTAAGAGTCTTTTTTCTAAAGGTTTCA--ATTAAACACATGTTGATt
gi|9 : aAT--TCTGACAAATTATTTTACAATATATTAATAAA---TC-TTTTT-TAAG---GT--TTATTTAACAC-TTTTGATTG-AAAATCTGAAGCAA---AGATG-----TC-ATCACA-GGGT--ATTC-------------C--TAATT-GATTTA--GC-AAAACA---GAAAC-ACTGC--TCAACCAACAATTC-TTTTTGTTA-TTAT--T--CA------ATAT-CT--TATT----TT-C--TTGA-AGTGCACTCTCACAG--AAATTGTT---------------ATTTTATTTATG-AATAT-GTT---GTAAA--TA--ATTAATA--GT-ATTGG-A--TAGAGTTTCG--ATATTTAag
gi|6 : TTAAACAC-TTTTGATTGTAGA-TCTGAAGAAA---AGATG-----TT-ATCGCA-GGAT--ACGC-------------T--TTAGTTGATTCA--GT-AAAAAAAAATAAAC-ACTGCATTCAAACATCAATTC-TTTTTGTTA-TCAT--T--CA------AAAT-CA--TATT----TT-C--TTGA-AGTGCACTCTCA-AGC-AAAGTATA---------------ATTTGATTTATG-AATGT-GTT---GTAAA--CA--TTTAACA--GT-ATTGG-G--TAAGGTTTCAATATATATAATGGAT-ACCTACCTAATTCCCCCA----TAACTGCAT--AGTTTGAATTT--TCTTATGTACtt
gi|7 : TTG-TTA-AGA-T-TGAAGAAACGCAGTTG-----TTCATCACAAGGATTGATGCGTAAGTCGCATCGCTGCTAGT---TTCATGGTGAAAAAA---TAAACCACTGC--TCAACCAACAATTCTTTTTTGTTATTCATACTAACA------AAATGCAGGGATTCCTGTT-CGATTG--AGTGCA--CGTG-AGCAAAAGTATCTGATCCCAACTTTTTGTTTGATTTATATGATGTGGTTTTGGTAAAATTAATTTTTATAACGTAATTGGAA--TAAGGTTTC---A-ATAccca
gi|3 : ttgaaAGAAA---AGATGCAATGTT-GTCGCA-GAAT--ATAC-------------agtatcatc
gi|12 : tagaatagaatatcatttattttcaattttggatccattaagggtattcagaacaaatgtaacatgaatactgaaataaaacataacataaactaaaaataaacaggggaagagatccaaatgatagcattcaggtgaaatttaagtgcatgtacatcatgtattatattaatacaatatcaattattacattgatgaagtgcaaataatgtttcagtagtagatgccacattatattcaaAGAAA---AGATGCAATGTT-ATCGCA-GGAT--ATAC-------------C--catgacaattatttatgtagtcagcaagacaagttatcatattactgtcttcatttgacataagccatatcaatctatctctatctaaaagcaaggaaaagttgaaattttcatctatcacgtaatttgcaaatccttgtctgtattgttcctaagttgggcattcaaacataaaatgaatttcatcttctactgcgtctggattacaaagtttacattttcgatctgcttcagggacatttttgtatctgccaatttcaatttctagcttatgtgaactgatgcggaaatttgtgaaacatttaagaatatggggttttactatgacaaaaaggtatttttcctttgaaaagcttcttttgaataatccgtatgttcgtaatgtacatctccgatgtataaaaagt
gi|8 : aaaaataatcagggaagtgatccaaatgatagcacttaggtaaaaaagtacattgtacaacatgtattataataatatgtatcaattattacattgataaattgctaaaatagtagatggcacattatattcaggtatattatattcaATG-----TT-ATCGCA-GGAT--ATAC-------------C--catgacatttatatatatagtcagcaagacaagttattatattac
gi|6 : agaatagaattatagaatttatttccaattttggacccataaagggtattcagaactattgaaataaaacataacataaacaaaacaaaaaaaaaataatcaggggaagagatccaaatgatagcacttaggtaaaaaagtacacatgtacaacatgtattataataatattgtatcaattattacattgataaattgctacaatagtagatggcacattatattcaggtatattattttcaCAT--T--CATAAATCAAAT-TA--TACT----TTGC--TTGAGAGTGCACT-TCA-AG--AAAATA--------------------TGATTT-TG-AATGtgcatctt
1 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|24 ): AGGAAAATAATGAAATCAAATCCTCAATGAAAATTCATGATTATACAG
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111111111111
lowQualScore : 1111111 1111111111 1111111 44444444444444444444444444 11111111111 1 111111 55555555555555555 11111111 1 111 2222222222222222222222222222222222222222222222222222222222222 111 11111 4444444444444 1111 22222222222222 1 11111111 22222 11111 1111 1 1111 44444444444444 11111 2 11 1 44444444 111 1 1 22222222 1 111 1 2222222 11 111 11 11 5555555555555 11 111 11 11111 111 1111 11 111111 555555555555555 111 11 22 11 1111 333 222 1 2222222 11 2222
lowQualScore : 0000000 777 4 4 4 8 2 55 888 3 5555 55 666 666 3 3 44 3 9999999999 3333333 3 44 77777 0 1 44 3 3 3 55 33333333333333333333333333 4 4 4 4 88888888888 2 77 222222 4 4 4 88888888888888888 0 777 44444444 4 5 0 0 55 3 1 1 1 77 000 5 5 0 1 4 0 99 6 5 5 0 0000000000000000000000000000000000000000000000000000000000000 99 111 6 44444 1111111111111 77 2222 77 5 22222222222222 0 3 5 77 0 88888888 11111 22222 0000 5 1 5 66 0 1 1 1 0 0 5 4444 6 6 22 88888888888888 5 55555 0 22 2 0 33333333 8 444 0 0 0 11 3 88888888 0 777 0 4444444 33 0 8 0 3 8 8 0 444 8 8 11 1 11 22 2222222222222 11 8 444 8 11 8 8 33333 1 8 222 7777 11 5 55 0 666666 000000000000000 8 8 444 11 22 11 8 3333 000 999 6 0000000 6 11 6 7 0000
lowQualScore : ....... ... . . . . . .. ... . .... .. ... ... . . .. . .......... ....... . .. ..... . . .. . . . .. .......................... . . . . ........... . .. ...... . . . ................. . ... ........ . . . . .. . . . . .. ... . . . . . . .. . . . . ............................................................. .. ... . ..... ............. .. .... .. . .............. . . . .. . ........ ..... ..... .... . . . .. . . . . . . . .... . . .. .............. . ..... . .. . . ........ . ... . . . .. . ........ . ... . ....... .. . . . . . . . ... . . .. . .. .. ............. .. . ... . .. . . ..... . . ... .... .. . .. . ...... ............... . . ... .. .. .. . .... ... ... . ....... . .. . . ....
lowQualScore : 8888888 888 0 0 0 0 5 77 444 6 4444 00 444 444 6 6 66 3 6666666666 1111111 1 22 77777 8 8 66 3 3 6 55 00000000000000000000000000 1 0 0 0 66666666666 0 77 888888 4 4 4 99999999999999999 1 888 55555555 4 0 1 1 00 0 4 4 4 99 000 7 7 8 0 8 8 22 3 7 7 1 9999999999999999999999999999999999999999999999999999999999999 22 777 7 33333 4444444444444 99 1111 99 0 11111111111111 1 9 7 44 0 11111111 22222 55555 6666 0 0 7 11 1 4 3 4 1 0 7 2222 7 7 66 00000000000000 0 88888 0 55 5 0 22222222 0 000 8 0 0 77 2 00000000 0 555 0 5555555 88 8 0 6 2 0 0 6 000 0 0 00 0 00 22 0000000000000 00 0 000 0 00 0 0 00000 4 0 444 0000 00 6 66 6 444444 000000000000000 0 0 000 00 00 00 0 0000 000 777 0 0000000 7 00 7 3 7777
consensus : AATAGAAT-A-TN--ATTTAT---TTCCAATT-T-TG-GACC-CATTAAGGGTATTCAGAAC-AAATGTAAC-ATGA-A--TAT--TG---A---AAT-AAAACAT-AACATA--AA-C----------AAA-------A-A--TA-----AACAGGGGA--AGAG-AT-CCAAATGAT-AGCACT--CAGGTAAAA---A---A-------GT--ACAT-G-TACACCATGT-ATT-AT-AA----------TAAT-ATT-GTATCAATTATTA------CATTG-AT-AAAT-TGCA-A----A--A---TGTTACAATAGTAGA---TGGCA--------CATT-ATATTCA-GGTATATTATATTCAGGTATAT-CCT--G---CGATAACATT-GCATCTT-TTCTCATGACATTTATATATGTA--GTCAGCAAGACGAGT-TA-TTATAT------TA-----------CCGTC-TTC---ATT---------AGCCAT------------ATCAATCTATCTCTA--TTTGA---A-AGC-----AAG-------------GAA--AA----GTT--GG-AA--T---T-------TTCATCTATCATGTGATTTACAA-ATC-CTTGTCTGT-ATTGTT--------CAT-----AAGTT-----GG----GCAT-TCAAACATAAAATGNA-TTTCGTCTTCTACG-GAGTCTGAATTACAAAGTTTACATTTTCGGTCTGCTA-CAGGGACATTTTTGTA-TCTGCCAATTTCAATTTC----TAGCT-T-ATGTGAGCTG--A--T--GGAAGTTTGTGAAACATT---NAAGAATATGGGG-TTTTACTATGGCAGAAAGGTA-TTTTCCCTTGGGAA----GAG-CTTCTTTTGAAT---AATCCATATGTTCGTAACTTGCCCTTTT-CATT-TTTAGCACATTCTGACAAATTACTTCGCCA-TATAT-AATAAA---TC-TTTTTCTAA--GT---TT--ATTAAACAC-TTTTGATTG-AGA-TCTGAAGAAA---AGATGTT-ATCGCA-GGAT--ATGCC--TTAGT-------------GATTCA--GT-AAAAAA---TAAAC-ACTGC--TCAACCAACAATTC-TTTTTGTTA-TCAT--T--CAAAAT-CA--TATT----TTC--TTGAAGTGCACTCTCG-AGC-AAAGTATC---------------GTTTGATTTATG-AATGT-GTT---GTAAA--TA-TTTTAATA--GT-ATTGG-A--TAAGGTTTCGA-ATATATAATGGATAA-CTACCTA-TTCCCCCACC-CTAACTGCATAGAGTTTGAAGGCTTTCTTATGTACA
Reference ( family-754 ) : AATAGAAT-A-TN--ATTTAT---TTCCAATT-T-TG-GACC-CATTAAGGGTATTCAGAAC-AAATGTAAC-ATGA-A--TAT--TG---A---AAT-AAAACAT-AACATA--AA-C----------AAA-------A-A--TA-----AACAGGGGA--AGAG-AT-CCAAATGAT-AGCACT--CAGGTAAAA---N---A-------GT--ACAT-G-TACACCATGT-ATT-AT-AA----------TAAT-ATT-GTATCAATTATTA------CATTG-AT-AAAT-TGCA-A----A--A---TGTTACAATAGTAGA---TGGCA--------CATT-ATATTCA-GGTATATTATATTCAGGTATAT-CCT--G---CGATAACATT-GCATCTT-TTCTCATGACATTTATATATGTA--GTCAGCAAGACGAGT-TA-TTATAT------TA-----------CCGTC-TTC---ATT---------AGTGAC------------ATCAATCTATCTCTA--TTTGA---A-AGC-----AAG-------------GAA--AA----GTT--GG-AA--T---T-------TTCATCTATCATGTGATTTACAA-ATC-CTTGTCTGT-ATTGTT--------CAT-----AAGTT-----GG----GCAT-TCAAACATAAAATGNA-TTTCATCTTCTACG-GAGTCTGAATTACAAAGTTTACATTTTCGGTCTGCTA-CAGGGACATTTTTGTA-TCTGCCAATTTCAATTTC----TAGCT-T-ATGTGAACTG--A--T--GGAAGCTTGTGAAACATT---NAAGAATAT-GGG-TTTTACTATGGTAGAAAAGTA-TTTTCCCTTGGAAA----GAG-CTTCTTTTGAAT---AATCCATATGTTCGTAACTTGCCCTTTT-CATT-TNCAGCACATTCTGACAAATTATTTCG-CA-TATAT-AATAAA---TC-TTTTTCTAA--GT---TT--ATTAAACAC-TTTTGATTG-AGA-TCTGAAGAAA---AGATGTT-ATCGCA-GGAT--ATNCC--TTAGT-------------GATTCA--GC-AAAAAA---TAAAC-ACTGC--TCAACCAACAATTC-TTTTTGTTA-TCAT--T--CAAAAT-CA--TATT----TTC--TTGAAGTGCACTCTCG-AGC-AAAGTATC---------------GTTTGATTTATG-AATGT-GTT---GTAAA--TA--TTTAATA--GT-ATTGG-A--TAAGGTTTCGA-ATATATAATGGATAACCTACCTAATTCCCCCACCATTAACTGCATAGAGTTTGAANNCTTTCTTATGTACA
gi|1 : AATAGAAC-A-TA--ATTTAT---TTCCAATT-T-TG-GACC-CATTAAGGGTATTCAGAAC-AAATGTAAC-ATGA-A--TAT--TG---A---AAT-AAAACAT-AACATA--AA-C----------AAA-------A-A--TA-----AACAGGGGA--AGAG-AT-CCAAATGAT-AGCACT--CAGGTAAAA---T---A-------GT--ACAT-G-TGCACCATGT-ATT-AT-AA----------TAAT-ATT-GTATCAACCATTA------TATTG-AT-AAAG-TGCA-A----A--AAAATGTTACAATAGTAGA---TGACA--------CATT-ATATTCA-GGTATATTATATTCAGGTATAT-CCT--G---CGATAACATT-ACATCTT-TTCTCATGACATTTATATATATATAGTCAGCAAGACAAGT-TA-TTATAT------TA-----------CTGTC-TTC---ATT----------------------------TCAATCTATCTCTA--GTTGA---A-TGC-----AAG-------------GAA--AA----GTT--GG-AA--T---T-------TTCATCTATCATGTGATTTACAA-ATC-CTTGTCTAT-ATTGTT--------CAT-----AAGTT-----GG----GCAT-TCAAACATAAAATGTA-TTTCATCTTCTATG-GAGTCTGAATTACAAAGTTTACATTTTCGGTCTGCTA-TTGGGACATTTTTGTA-TCTGCCAATTTCAATTTC----TAGCT-T-ATGTG----------------AGTTTGTGAAACATT---GAAGAATATGGGG-TTTTACTAAAACAGAAAGGTATTTTTCCCTTGAGAAGCTTGAGCCTTCTTTTGAAT---AATGCCTATGTTCGTAACTTGCCCTTTT-CATT-TTTAGCAC--TCTGACAAATTACTTTGCCA-TATAT-AATAAA---TC-TTTTTCTAA--GTTCATT--ATTAAACAC-TTTTGATTG-AGA-TCTGAAGAAA---AGATGTT-GTCGCA-GGAT--ATGCC--CTAGT-------------GATTCA--GT-AAAAAA---TAAAC-ACTG---TCAACCAACAATTC-TTTTTGTTA-TCAT--T--CAAAAT-CA--TATT----TTC--TT--AGTGCACTCTCA-AGC-AAAGTATC---------------ATTTGATTTATG-AATGT-GTT---GTAAA--TATTTTTAATA--GT-ATTGG-A--TAAGGTTTC---ATATATAATGGATA--TTACCTA--CCCCCCACCCCTAACTGCATAAAGTTTGAAGGC--TCTTATGTACA
gi|10 : AATAGAAT-A-TT--ATTTAT---TTCCAATT-T-TG-GACC-CATTAAGAGTATTCAGAAC-AAATGTAAC-ATGA-A--TAT--TG---A---AAT-AAAACAT-AAAATA--AA-CA---------AAA-------A-A--TA-----GAGAGAGGG--AAAA-TT-CCAAATGAT-AGCACT--CAGGTGAAATTTA---A-------GA--ACAT-G-TACACCATGT-ACC-AT-AT----------TAAT-AAA-ATATCAATTATCA------CATTG-AT-AAAG-TGCA-AAAACA--A---TGTTGCAATAGTAGA---TGGCA--------CAc
gi|11 : ataaaA--------CATTTATATTTA-G-T-CACCATATTCAGGTAT-T-CTT--G---CAATAACATT-TCATCTT-TTC-----------ATATATGTA--GTCAGCAAGACGAGT-TA-TTATATTTGACATA-----------CAGCCATGC---AT----------------------------ATCAATCTATCTCTA--TTTGA---A-AGC-----AAG-------------GAA--AA----GTC--TG-CA--T---TG------TTCAT
gi|11 : GTCTGC-ATTGTT--------CAT-----AAGTT-----GG----GCAT-TCAAACATAAAATGAA-TTTCGTCTTCTACA-AAGTCTGA--------------ATTTTCGGTCTGCAA-CAGAGACaagttgggcattcaaacataaaatgaatttcgtcttctacaaagtctgaattttcggtctgcaacagagact
gi|12 : acatttatatttagtcaccatattcaggtattcttgcaataacatttcatcttttcatatatgtagtcagcaagacgagttattatatttgacatacagccatgcatatcaatctatctctatttgaaagcaaggaaaa----------AAA-------A-A--TA-----ATCAGGG-A--AGTG-AT-CCAAATGAT-AGCACT--TAGGTAAAA---A---A-------GT--ACATTG-TACAACATGT-ATT-AT-AA----------TAAT-AT--GTATCAATTATTA------CATTG-AT-AAAT-TGC-----------------TAAAATAGTAGA---TGGCA--------CATT-ATATTCA-GGTATATTATATTCAGGTATAT-CCT--G---CGATAACATT-GCATCTT-TTCTCATGACATTTATATATATA--GTCAGCAAGACAAGT-TA-TTATAT------TA-----------Ct
gi|13 : AATAGAAT----------TAT---TTCCAATT-T-TT-GGCCACA-TAAAGGTATTCAGAAC-AAAT-T-AC-ATGA-AATCAT--TG---A---AAT-AAAACAT-A----A--AA-C----------AAA-------A-A--TA-----AACAGGGGA--AGAGAATGCCAAATGAT-AGCATT--CAGGTAAAACG-A---A-------GT--ACAT-GTTACA-CATGT-ATT-AT-A------------AATAATT-GTATCAA-TA-TA------CATTGAAT-AAAT-TGCACA----A--A------TAC--------------CCA--------CATT-ATACTCAGGGTAT
gi|14 : aaagga-AA--T---T-------TTGATTTTGAATGCAATCCACAA-AT---TTGT-TGTTGTTGTT--------TAT-----AAATA-----GACAGAACAT-TCAAGGATAAATTTAC-TCTAGTTTTGTATG-AAATCTAAATTACACACCCAACATTTTTGGTCTGATAACAGGAATATTTTT-TA-TCTGTCTATTTCAATTTC----CAAATGT-ATGAAAGCTA--ATTT--GAAAATTT-TTAAACATT---T-AGAA
gi|15 : ATAAAGGGTATTCAGAAC-------------------TAT--TA---A---AAT-AAAACAT-AACATA--AA-C----------AAA-------A-AAATA-----ATCAGGG-A--AGAG-AT-CCAAATGAT-AGCACT--TGGGTAAAA---A---A-------------------AAACCATGT-ATT-AT-AA----------TAAT-ATT-GTATCAATTATTA------CATTG-AT-AAAT-TGC-----------------TACAATAGTAGA---TGGCA--------CATT-ATATTC
gi|16 : gAG-CTTCTTTTTGATTTTAATCCATATGT-CGTAACTTGCCCTTTTTCATTGTTTAGCACATTCTGACAAATTACTTCGCCA-TATAT-TATTAAGAGTCTTTTTTCTAAAGGT---TTCAATTAAACACATGTTGAT
gi|17 : aAATAGAAT-AATA--ATGTAT---TTC-AATT-TATG-GACT-CATTAAGGGTA-TCAGAAC-CAATGTAACAACGT-A--TAT--TGCCAA---GAT--AAACAT-AACAT---AA-C----------AAA-------A-A---A-----TACAGGGGA--AGAG-AT-CCAAag
gi|18 : aaag-A-TG--ATTTATCCTTTCCAATTAC-TGTGATCTCCTTAAGGGTATTCAGAACAAAATGTAAC-ATAAGA--CATGATG---ATATAAT-AACGCATGAAAGTACTAA-C----------AAAT------ATA--TA-----AACAG
gi|19 : aacaC-----AAG-------------AGA--AA----ATT--GG-AAATT---T-------TTCATCCATCATGTGATTTAAAATATTACTTGTCTGTAATTGCTGTGATATACATTTA--GAGTTCGCGAAG----GCATATCAAACACAA
gi|2 : AAAACGAGT-TA-T---AT------CA-----------TCATC-TTC---ATTTGACATTTAAGCCAT------------ATCAATCCATCTCTA--TTTGA---A-AGC-----AAG-------------GAT--TA----GTG--GG-AA--A---T-------TTCATCTATCAGGTGGCCAACAA-ATC-CTTGTCTGT-ATTGTT--------CAT-----AAGCT-----GG----ACAT-TCAAACATAAAATGTA-TTTCATCTTCTACA-GAGTCTGAATTACACAGTTTACATTTTCGGTCTGCTT-CAGGGACATTTCTGTA-CCTGCCAATTTCAATTTC----TAGTT-TAATGTGAACTGATA--T--GGAAGTTTGTGAAACATTTTAAAAGAATAT-GGGCTTTTACTATGGTAGAAAAGTA-TTTTCCCTTGG--A----TAG-TTTCTTTTGAAT---AATCCATATGTTCGTAATCTACCCTTTT-CATT-TGCAACACATTCTGACCAGTTAT------------T-AATAAA---TC-CTTCCCTAA--G----TT--AGAAAAC-----------------TCTGAAGCAA---AGATGTT-TTCACA-GGAT--ATTCCAATT--T-------------GATTCA--GC-CAAGAT---TAAAC-ACTGC--TCAACCAACAATTC-GTTTTGCTA-TTAT--T--CAATAT-CT--TATT----TTC--TTGAAGTG-------------------TC---------------GTTTGATTTATA-AATAT-GCT---GTAAC--TA--TTGGATA--GT-ATTGG-ATTTAAAGTTTCAA-ATATATAATGGATAA-CTACCTATTTCCC---CCATTAA-TGTATAGA--TTG-AGGCTTTCTTATGTACA
gi|20 : -T-TG-GACC-CATAAAGGGTATTCAGAAC-AAAT--AAC-AAGA-A--AAT--TG---A---AAT-AAAACAT-AACATA--AA-C----------AAAAAAAAATA-A--TA-----ATCAGGGGA--AGAG-AT-CCAAATGAT-tgagagtttaccacttagatgttttcaaggaattttcaatatcataaattggtctcttagcagcagcatattctgaaat
gi|21 : AAGAGAAT-A-TC--ATTTAT---TTCCAATA-C-TG-GACC-CAT------TATTCAGAAC-AAATAT-TT-ATGA-A--TAT--TG---A---AATAAAAACAT-AAAATA--GACC----------AAA-------A-A--TA-----AA
gi|22 : tagAGGGGA--AGAA-AT-CC--ATGATGAGCACT--TA-GTAAAA---A---AAAAAAACG---ACAT---TACACCATGTAATG-AT-AA----------TAATAATT-GT
gi|23 : AGTTTACATTTTCGGTCTGCTA-CAGGAACATATTTGTA-TCTGCCAATTTtat
gi|3 : AATAGAAT-A-TC--ATTTAT---TTTCAATT-T-TG-GATC-CATTAAGGGTATTCAGAAC-AAATGTAAC-ATGA-A--TAC--TG---A---AAT-AAAACAT-AACATA--AA-CT---------AAA-------A-A--TA-----AACAGGGGA--AGAG-AT-CCAAATGAT-AGCATT--CAGGTGAAA---TTTAA-------GT--GCAT-G-TACATCATGT-ATT-AT-AT----------TAAT-ACA-ATATCAATTATTA------CATTG-AT-GAAG-TGCA-A----ATAA---TGTTTCAGTAGTAGA---TGCCA--------CATT-ATATTCA-AGTATATT----------------CT--G---CGACAACATT-GCATCTT-TTCTCATGACAATTATTTATGTA--GTCAGCAAGACAAGT-TA-TCATAT------TA-----------CTGTC-TTC---ATTTGACATA--AGCCAT------------ATCAATCTATCTCTA--TCTAA---A-AGC-----AAG-------------GAA--AA----GTT--GA-AA--T---T-------TTCATCTATCACGTAATTTGCAA-ATC-CTTGTCTGT-ATTGTT--------CCT-----AAGTT-----GG----GCAT-TCAAACATAAAATGAA-TTTCATCTTCTACT-GCGTCTGGATTACAAAGTTTACATTTTCGATCTGCTT-CAGGGACATTTTTGTA-TCTGCCAATTTCAATTTC----TAGCT-T-ATGTGAACTG--A--TGCGGAAATTTGTGAAACATT---TAAGAATATGGGG-TTTTACTATGACAAAAAGGTA-TTTTTCCTTTGAAA-----AG-CTTCTTTTGAAT---AATCCGTATGTTCGTAAt
gi|4 : tagTTAT---TTCCAATT-T-TG-GACC-CATTAAGAGTATTCAGAAT-AAATATAAC-GTGA-G--TGT--TT---A---CAT-AAA--GT-AACAT-------------------A-------A-A--TA-----ACCAGGGTATCAAAG-AT-CCAAATAAT-AGCACT--AAGGTGAAA---C------------T---CA--A-TACACAATGT-ATCAAT-AATCAAATTAATTAAT-ATA-ATGTCAATTATTG------CATGT-AT-AAATATACA-A----A--G---TGTTATGACAGTAGA---TGGCGTAAAATGCCATA-AAATTAT-GGTATGC--TACTTAGCT-TATGCCT--GACTNNNNNNNNNN-NNNNNNN-NNNNNNNNNNNNNNNNNNNNNNN--NNNNNNNATAC-AGTGTA--TATAT------T--------------GTC-TGCAAAACA---------AGTTAT------------ATCA--CTATTTTCA--TTTGACATA-AGCCATATAAATCTATCTTTATTTGAACGCA----GTG--AG-AA--T---TTGGTCTTTTCTTCTATCGTATGATTTACAA-ATT-GTTGTCTAT-ATTGTT--------CAT-----AAGTA-----GG----GCAT-TCAAAAAC-AAGTGAA-TTTCATCATCTACA-GAGTCTGAATTACAAAATTTACATTTGCGGTCTGCTA-CAAGGACA-TATTGTG-TCTGCCAATTTCAATTTTTTTATAGTT-T-ACGTGAGCTG--------------------AACAGT---GAAAAATAT-AG-----TA--ATGGTAGAAAAATA-TTTTCCCTTGG--A----GAG-CTTCTTTTGAAT---CGTCCATAAGTTCGTAACTTGCGCTTTT-AATT-tgtacatctccgatgtataaaaagt
gi|5 : TA--AA-C----------AAA-------A-A--TACAGATAACAGGGAA--AGAG-AT-CCAATTGAT-AGCACTTTCAGGTCAAA-------A-------GG--A------------ATGT-ATT-ATCAA----------TGATCATTAGTATCAATTATAATGGCGGCATTG-ATTAAAT-TGCC-------------CTTTA-AATAGTAGAGAATGGCA--------CATT-AGAT----GATCC-TTCTAGT--GGTATATGCCTTGG---CGATAACATTCGCATGTCGTTCTCATGACATT-A-ATATGTA--GTCAGCAAGACAAGT-TAGTTATAT------TAGCTACTGATTGTCGTT-TTCT--ATT---------A-TGACCATGAAGGCCATATCAATCTATCTCTACTTTTGA---AGAGC-----AAGTTC----------GGA--AATATTGTTACGGTAA--TGTAT-------TTAATC-ATCATGTGATT-ACAA-ATC-CTTGTCTGT-ATTGT---------CATTGTGAAGGTT-----GG----GCAT-TCAA-CATAAAATGTACTTTCATCTTCCTCGCGAG----AGT--CAAGTTTTACATTT-CGGTCTGCTAACAGGGACATTGTTGTACTCTGCCAATTTAAGTTTC----TAGCT-T-ATGTGggtaata
gi|6 : atagtatatctttaatttttttccatatttttttggaacaaaattggtgaacacatcggacattgtgaatTTAAACAC-TTTTGATTGTAGA-TCTGAAGAAA---AGATGTT-ATCGCA-GGAT--ACGCT--TTAGTT------------GATTCA--GT-AAAAAAAAATAAAC-ACTGCATTCAAACATCAATTC-TTTTTGTTA-TCAT--T--CAAAAT-CA--TATT----TTC--TTGAAGTGCACTCTCA-AGC-AAAGTATA---------------ATTTGATTTATG-AATGT-GTT---GTAAA--CA--TTTAACA--GT-ATTGG-G--TAAGGTTTCAATATATATAATGGAT-ACCTACCTAATTCCCCCA----TAACTGCAT--AGTTTGAAT--TTTCTTATGTAC
gi|7 : TTG-TTA-AGA-T-TGAAGAAACGCAGTTGTTCATCACAAGGATTGATGCG--TAAGTCGCATCGCTGCTAGTTTCATGGTGAAAAAA---TAAACCACTGC--TCAACCAACAATTCTTTTTTGTTATTCATACTAACAAAATGCAGGGATTCCTGTTCGATTG-AGTGCA--CGTG-AGCAAAAGTATCTGATCCCAACTTTTTGTTTGATTTATATGATGTGGTTTTGGTAAAATTAATTTTTATAACGTAATTGGAA--TAAGGTTTC-A-ATAccca
gi|8 : ttgaaAATAGAATTA-TAGAATTTAT---TTCCAATT-T-TG-GACC-CATAAAGGGTATTCAGAAC-------------------TAT--TG---A---AAT-AAAACAT-AACATA--AA-CAAAACAAAAAAAA-------A-A--TA-----ATCAGGGGA--AGAG-AT-CCAAATGAT-AGCACT--TAGGTAAAA---A---A-------GTACACAT-G-TACAACATGT-ATT-AT-AA----------TAAT-ATT-GTATCAATTATTA------CATTG-AT-AAAT-TGC-----------------TACAATAGTAGA---TGGCA--------CATT-ATATTCA-GGTATATTATTTTCAGGTATAT-CCT--G---CGATAACATT-GCATCTT-agtatcatc
gi|9 : agATTCTGACAAATTATTTTA-CAATATATTAATAAA---TC-TTTTTTAAG--GT---TT--ATTTAACAC-TTTTGATTG-AAAATCTGAAGCAA---AGATGTC-ATCACA-GGGT--ATTCC--TAATT-------------GATTTA--GC-AAAACA---GAAAC-ACTGC--TCAACCAACAATTC-TTTTTGTTA-TTAT--T--CAATAT-CT--TATT----TTC--TTGAAGTGCACTCTCACAG--AAATTGTT---------------ATTTTATTTATG-AATAT-GTT---GTAAA--TA--ATTAATA--GT-ATTGG-A--TAGAGTTTCG--ATATTTA
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|24 ): AGGAAAATAATGAAATCAAATCCTCAATGAAAATTCATGATTATACAG
Alignments
lowQualScore : 1111111 1111111111 1111111 33333333333333333333333 11111111111 1 111111 55555555555555555 11111111 1 111 999999999999999999999999999999999999999999999999999999999 111 11111 4444444444444 1111 2222222222 1 11111111 22222 11111 1111 1 1111 44444444444 11111 1 3333333333 111 1 1 1 111 1 2222222 11 111 11 11 5555555555555 11 111 11 11111 111 1111 11 111111 555555555555555 111 33333 11 1111 333 1 33333 11
lowQualScore : 0000000 777 4 4 4 8 2 55 888 3 5555 55 666 666 3 3 44 3 9999999999 3333333 3 44 77777 0 1 44 3 3 3 55 77777777777777777777777 6 4 4 4 88888888888 2 77 222222 4 4 4 88888888888888888 0 777 44444444 4 5 0 0 55 3 1 1 1 77 000 5 5 0 1 4 0 99 6 5 5 0 999999999999999999999999999999999999999999999999999999999 99 111 6 44444 1111111111111 77 2222 77 5 6666666666 5 0 3 5 77 0 88888888 11111 22222 0000 5 1 5 1 66 0 1 1 1 0 0 5 4444 6 6 22 33333333333 1 5 55555 55 2 0 3333333333 8 444 0 0 0 3 4444 2 0 777 0 4444444 33 0 8 0 3 8 8 0 444 8 8 11 11 22 2222222222222 11 8 444 8 11 8 8 33333 1 8 222 7777 11 5 55 0 666666 000000000000000 8 8 444 8 00000 11 8 3333 000 7 3 7 77777 6 11 6 7 7777
lowQualScore : ....... ... . . . . . .. ... . .... .. ... ... . . .. . .......... ....... . .. ..... . . .. . . . .. ....................... . . . . ........... . .. ...... . . . ................. . ... ........ . . . . .. . . . . .. ... . . . . . . .. . . . . ......................................................... .. ... . ..... ............. .. .... .. . .......... . . . . .. . ........ ..... ..... .... . . . . .. . . . . . . . .... . . .. ........... . . ..... .. . . .......... . ... . . . . .... . . ... . ....... .. . . . . . . . ... . . .. .. .. ............. .. . ... . .. . . ..... . . ... .... .. . .. . ...... ............... . . ... . ..... .. . .... ... . . . ..... . .. . . ....
lowQualScore : 8888888 888 0 0 0 0 5 77 444 6 4444 00 444 444 6 6 66 3 6666666666 1111111 1 22 77777 8 8 66 3 3 6 55 22222222222222222222222 6 0 0 0 66666666666 0 77 888888 4 4 4 99999999999999999 1 888 55555555 4 0 1 1 00 0 4 4 4 99 000 7 7 8 0 8 8 22 3 7 7 1 666666666666666666666666666666666666666666666666666666666 22 777 7 33333 4444444444444 99 1111 99 0 1111111111 0 1 9 7 44 0 11111111 22222 55555 6666 0 0 7 4 11 1 4 3 4 1 0 7 2222 7 7 22 00000000000 4 0 88888 00 5 0 2222222222 0 000 8 0 0 2 8888 5 0 555 0 5555555 88 8 0 6 2 0 0 6 000 0 0 00 00 22 0000000000000 00 0 000 0 00 0 0 00000 4 0 444 0000 00 6 66 6 444444 000000000000000 0 0 000 0 44444 00 0 0000 000 3 3 3 77777 7 00 7 3 7777
consensus : AATAGAAT-A-TN--ATTTAT---TTCCAATT-T-TG-GACC-CATTAAGGGTATTCAGAAC-AAATGTAAC-ATGA-A--TAT--TG---A---AAT-AAAACAT-AACATA--AA-C----------AAA-------A-A--TA-----AACAGGGGA--AGAG-AT-CCAAATGAT-AGCACT--CAGGTAAAA---AA-------GT--ACAT-G-TACACCATGT-ATT-AT-AA----------TAAT-ATT-GTATCAATTATTA------CATTG-AT-AAAT-TGCA-A----A--A---TGTTACAATAGTAGA---TGGCA--------CATT-ATATTCA-GGTATATTATATTCAGGTATAT-CCT--G---CGATAACATT-GCATCTT-TTCTCATGACATTTATATATGTA--GTCAGCAAGACGAGT-TA-TTATATTA-----------CCGTCTT--C---AT-T---------A-----------GC----CATATCAATCTATCTCTA--TTTGA---A-AGC-----AAG-------------GAA--AA----GTT--GG-AA--T-------T-TTCATCTATCATGTGATTTACAA-ATC-CTTGTCTGT-ATTGTT--------CAT-----AAGTT-----GG----GCAT-TCAAACATAAAATGNA-TTTCGTCTTCTACG-GAGTCTGAATTACAAAGTTTACATTTTCGGTCTGCTA-CAGGGACATTTTTGTA-TCTGCCAATTTCAATTTC----TAGCT-T-ATGTGAGCTG--A--T--GGAAGTTTGTGAAACATT---NAAGAATATGGGGTTTTACTATGGCAGAAAGGTA-TTTTCCCTTGGGAA----GAG-CTTCTTTTGAAT---AATCCATATGTTCGTAACTTGCCCTTTT-CATT-TTTAGCACATTCTGACAAATTACTTCGCCATATAT-AATAAA---TC-TTTTTCTAA--GT---TT--ATTAAACAC-TTTTGATTG-AGA-TCTGAAGAAA---AGATGTT-ATCGCA-GGAT--ATGCC--TTAGT-------------GATTCA--GT-AAAAAA---TAAAC-ACTGC--TCAACCAACAATTC-TTTTTGTTA-TCAT--T--CAAAAT-CA--TATT----TTC--TTGAAGTGCACTCTCG-AGC-AAAGTATC---------------GTTTGATTTATG-AATGT-GTT---GT-AAAT--A-TTTTAATA--GT-ATTGG-A--TAAGGTTTCGA-ATATATAATGGATAACTACCT-ATTCCCCCA-C-CTAACTGCATAGAGTTTGAAGGCTTTCTTATGTACA
Reference ( family-754 ) : AATAGAAT-A-TN--ATTTAT---TTCCAATT-T-TG-GACC-CATTAAGGGTATTCAGAAC-AAATGTAAC-ATGA-A--TAT--TG---A---AAT-AAAACAT-AACATA--AA-C----------AAA-------A-A--TA-----AACAGGGGA--AGAG-AT-CCAAATGAT-AGCACT--CAGGTAAAA---AA-------GT--ACAT-G-TACACCATGT-ATT-AT-AA----------TAAT-ATT-GTATCAATTATTA------CATTG-AT-AAAT-TGCA-A----A--A---TGTTACAATAGTAGA---TGGCA--------CATT-ATATTCA-GGTATATTATATTCAGGTATAT-CCT--G---CGATAACATT-GCATCTT-TTCTCATGACATTTATATATGTA--GTCAGCAAGACGAGT-TA-TTATATTA-----------CCGTCTT--C---AT-T---------A-----------GC----CATATCAATCTATCTCTA--TTTGA---A-AGC-----AAG-------------GAA--AA----GTT--GG-AA--T-------T-TTCATCTATCATGTGATTTACAA-ATC-CTTGTCTGT-ATTGTT--------CAT-----AAGTT-----GG----GCAT-TCAAACATAAAATGNA-TTTCGTCTTCTACG-GAGTCTGAATTACAAAGTTTACATTTTCGGTCTGCTA-CAGGGACATTTTTGTA-TCTGCCAATTTCAATTTC----TAGCT-T-ATGTGAGCTG--A--T--GGAAGTTTGTGAAACATT---NAAGAATATGGGGTTTTACTATGGCAGAAAGGTA-TTTTCCCTTGGGAA----GAG-CTTCTTTTGAAT---AATCCATATGTTCGTAACTTGCCCTTTT-CATT-TTTAGCACATTCTGACAAATTACTTCGCCATATAT-AATAAA---TC-TTTTTCTAA--GT---TT--ATTAAACAC-TTTTGATTG-AGA-TCTGAAGAAA---AGATGTT-ATCGCA-GGAT--ATGCC--TTAGT-------------GATTCA--GT-AAAAAA---TAAAC-ACTGC--TCAACCAACAATTC-TTTTTGTTA-TCAT--T--CAAAAT-CA--TATT----TTC--TTGAAGTGCACTCTCG-AGC-AAAGTATC---------------GTTTGATTTATG-AATGT-GTT---GT-AAAT--A-TTTTAATA--GT-ATTGG-A--TAAGGTTTCGA-ATATATAATGGATAACTACCT-ATTCCCCCA-CCCTAACTGCATAGAGTTTGAAGGCTTTCTTATGTACA
gi|1 : AATAGAAC-A-TA--ATTTAT---TTCCAATT-T-TG-GACC-CATTAAGGGTATTCAGAAC-AAATGTAAC-ATGA-A--TAT--TG---A---AAT-AAAACAT-AACATA--AA-C----------AAA-------A-A--TA-----AACAGGGGA--AGAG-AT-CCAAATGAT-AGCACT--CAGGTAAAA---TA-------GT--ACAT-G-TGCACCATGT-ATT-AT-AA----------TAAT-ATT-GTATCAACCATTA------TATTG-AT-AAAG-TGCA-A----A--AAAATGTTACAATAGTAGA---TGACA--------CATT-ATATTCA-GGTATATTATATTCAGGTATAT-CCT--G---CGATAACATT-ACATCTT-TTCTCATGACATTTATATATATATAGTCAGCAAGACAAGT-TA-TTATATTA-----------CTGTCTT--C---AT-T-------------------------------TCAATCTATCTCTA--GTTGA---A-TGC-----AAG-------------GAA--AA----GTT--GG-AA--T-------T-TTCATCTATCATGTGATTTACAA-ATC-CTTGTCTAT-ATTGTT--------CAT-----AAGTT-----GG----GCAT-TCAAACATAAAATGTA-TTTCATCTTCTATG-GAGTCTGAATTACAAAGTTTACATTTTCGGTCTGCTA-TTGGGACATTTTTGTA-TCTGCCAATTTCAATTTC----TAGCT-T-ATGTG----------------AGTTTGTGAAACATT---GAAGAATATGGGGTTTTACTAAAACAGAAAGGTATTTTTCCCTTGAGAAGCTTGAGCCTTCTTTTGAAT---AATGCCTATGTTCGTAACTTGCCCTTTT-CATT-TTTAGCAC--TCTGACAAATTACTTTGCCATATAT-AATAAA---TC-TTTTTCTAA--GTTCATT--ATTAAACAC-TTTTGATTG-AGA-TCTGAAGAAA---AGATGTT-GTCGCA-GGAT--ATGCC--CTAGT-------------GATTCA--GT-AAAAAA---TAAAC-ACTG---TCAACCAACAATTC-TTTTTGTTA-TCAT--T--CAAAAT-CA--TATT----TTC--TT--AGTGCACTCTCA-AGC-AAAGTATC---------------ATTTGATTTATG-AATGT-GTT---GT-AAAT--ATTTTTAATA--GT-ATTGG-A--TAAGGTTTC---ATATATAATGGAT-ATTACCT-A-CCCCCCACCCCTAACTGCATAAAGTTTGAAGGC--TCTTATGTACA
gi|10 : AATAGAAT-A-TT--ATTTAT---TTCCAATT-T-TG-GACC-CATTAAGAGTATTCAGAAC-AAATGTAAC-ATGA-A--TAT--TG---A---AAT-AAAACAT-AAAATA--AA-CA---------AAA-------A-A--TA-----GAGAGAGGG--AAAA-TT-CCAAATGAT-AGCACT--CAGGTGAAATTTAA-------GA--ACAT-G-TACACCATGT-ACC-AT-AT----------TAAT-AAA-ATATCAATTATCA------CATTG-AT-AAAG-TGCA-AAAACA--A---TGTTGCAATAGTAGA---TGGCA--------CAc
gi|11 : ataaaA--------CATTTATATTTA-G-T-CACCATATTCAGGTAT-T-CTT--G---CAATAACATT-TCATCTT-TTC-----------ATATATGTA--GTCAGCAAGACGAGT-TA-TTATAT------------------TTGAC---ATAC---------A-----------GCCATGCATATCAATCTATCTCTA--TTTGA---A-AGC-----AAG-------------GAA--AA----GTC--TG-CA--T-------TGTTCAT
gi|11 : GTCTGC-ATTGTT--------CAT-----AAGTT-----GG----GCAT-TCAAACATAAAATGAA-TTTCGTCTTCTACA-AAGTCTGA--------------ATTTTCGGTCTGCAA-CAGAGACaagttgggcattcaaacataaaatgaatttcgtcttctacaaagtctgaattttcggtctgcaacagagact
gi|12 : acatttatatttagtcaccatattcaggtattcttgcaataacatttcatcttttcatatatgtagtcagcaagacgagttattatatttgacatacagccatgcatatcaatctatctctatttgaaagcaaggaaaa----------AAA-------A-A--TA-----ATCAGGG-A--AGTG-AT-CCAAATGAT-AGCACT--TAGGTAAAA---AA-------GT--ACATTG-TACAACATGT-ATT-AT-AA----------TAAT-AT--GTATCAATTATTA------CATTG-AT-AAAT-TGC-----------------TAAAATAGTAGA---TGGCA--------CATT-ATATTCA-GGTATATTATATTCAGGTATAT-CCT--G---CGATAACATT-GCATCTT-TTCTCATGACATTTATATATATA--GTCAGCAAGACAAGT-TA-TTATATTA-----------Ct
gi|13 : AATAGAAT----------TAT---TTCCAATT-T-TT-GGCCACA-TAAAGGTATTCAGAAC-AAAT-T-AC-ATGA-AATCAT--TG---A---AAT-AAAACAT-A----A--AA-C----------AAA-------A-A--TA-----AACAGGGGA--AGAGAATGCCAAATGAT-AGCATT--CAGGTAAAACG-AA-------GT--ACAT-GTTACA-CATGT-ATT-AT-A------------AATAATT-GTATCAA-TA-TA------CATTGAAT-AAAT-TGCACA----A--A------TAC--------------CCA--------CATT-ATACTCAGGGTAT
gi|14 : aaagga-AA--T-------T-TTGATTTTGAATGCAATCCACAA-AT---TTGT-TGTTGTTGTT--------TAT-----AAATA-----GACAGAACAT-TCAAGGATAAATTTAC-TCTAGTTTTGTATG-AAATCTAAATTACACACCCAACATTTTTGGTCTGATAACAGGAATATTTTT-TA-TCTGTCTATTTCAATTTC----CAAATGT-ATGAAAGCTA--ATTT--GAAAATTT-TTAAACATT---T-AGAA
gi|15 : ATAAAGGGTATTCAGAAC-------------------TAT--TA---A---AAT-AAAACAT-AACATA--AA-C----------AAA-------A-AAATA-----ATCAGGG-A--AGAG-AT-CCAAATGAT-AGCACT--TGGGTAAAA---AA-------------------AAACCATGT-ATT-AT-AA----------TAAT-ATT-GTATCAATTATTA------CATTG-AT-AAAT-TGC-----------------TACAATAGTAGA---TGGCA--------CATT-ATATTC
gi|16 : gAG-CTTCTTTTTGATTTTAATCCATATGT-CGTAACTTGCCCTTTTTCATTGTTTAGCACATTCTGACAAATTACTTCGCCATATAT-TATTAAGAGTCTTTTTTCTAAAGGT---TTCAATTAAACACATGTTGAT
gi|17 : aAATAGAAT-AATA--ATGTAT---TTC-AATT-TATG-GACT-CATTAAGGGTA-TCAGAAC-CAATGTAACAACGT-A--TAT--TGCCAA---GAT--AAACAT-AACAT---AA-C----------AAA-------A-A---A-----TACAGGGGA--AGAG-AT-CCAAag
gi|18 : aaag-A-TG--ATTTATCCTTTCCAATTAC-TGTGATCTCCTTAAGGGTATTCAGAACAAAATGTAAC-ATAAGA--CATGATG---ATATAAT-AACGCATGAAAGTACTAA-C----------AAAT------ATA--TA-----AACAG
gi|19 : aacaC-----AAG-------------AGA--AA----ATT--GG-AAATT-------T-TTCATCCATCATGTGATTTAAAATATTACTTGTCTGTAATTGCTGTGATATACATTTA--GAGTTCGCGAAG----GCATATCAAACACAA
gi|2 : AAAACGAGT-TA-T---ATCA-----------TCATCTT--C---AT-TTGACATTTAA-----------GC----CATATCAATCCATCTCTA--TTTGA---A-AGC-----AAG-------------GAT--TA----GTG--GG-AA--A-------T-TTCATCTATCAGGTGGCCAACAA-ATC-CTTGTCTGT-ATTGTT--------CAT-----AAGCT-----GG----ACAT-TCAAACATAAAATGTA-TTTCATCTTCTACA-GAGTCTGAATTACACAGTTTACATTTTCGGTCTGCTT-CAGGGACATTTCTGTA-CCTGCCAATTTCAATTTC----TAGTT-TAATGTGAACTGATA--T--GGAAGTTTGTGAAACATTTTAAAAGAATATGGGCTTTTACTATGGTAGAAAAGTA-TTTTCCCTTGG--A----TAG-TTTCTTTTGAAT---AATCCATATGTTCGTAATCTACCCTTTT-CATT-TGCAACACATTCTGACCAGTTAT-----------T-AATAAA---TC-CTTCCCTAA--G----TT--AGAAAAC-----------------TCTGAAGCAA---AGATGTT-TTCACA-GGAT--ATTCCAATT--T-------------GATTCA--GC-CAAGAT---TAAAC-ACTGC--TCAACCAACAATTC-GTTTTGCTA-TTAT--T--CAATAT-CT--TATT----TTC--TTGAAGTG-------------------TC---------------GTTTGATTTATA-AATAT-GCT---GT-AACT--A--TTGGATA--GT-ATTGG-ATTTAAAGTTTCAA-ATATATAATGGATAACTACCT-ATTTCCCC--CATTAA-TGTATAGA--TTG-AGGCTTTCTTATGTACA
gi|20 : -T-TG-GACC-CATAAAGGGTATTCAGAAC-AAAT--AAC-AAGA-A--AAT--TG---A---AAT-AAAACAT-AACATA--AA-C----------AAAAAAAAATA-A--TA-----ATCAGGGGA--AGAG-AT-CCAAATGAT-tgagagtttaccacttagatgttttcaaggaattttcaatatcataaattggtctcttagcagcagcatattctgaaat
gi|21 : AAGAGAAT-A-TC--ATTTAT---TTCCAATA-C-TG-GACC-CAT------TATTCAGAAC-AAATAT-TT-ATGA-A--TAT--TG---A---AATAAAAACAT-AAAATA--GACC----------AAA-------A-A--TA-----AA
gi|22 : tagAGGGGA--AGAA-AT-CC--ATGATGAGCACT--TA-GTAAAA---AAAAAAAACG---ACAT---TACACCATGTAATG-AT-AA----------TAATAATT-GT
gi|23 : AGTTTACATTTTCGGTCTGCTA-CAGGAACATATTTGTA-TCTGCCAATTTtat
gi|3 : AATAGAAT-A-TC--ATTTAT---TTTCAATT-T-TG-GATC-CATTAAGGGTATTCAGAAC-AAATGTAAC-ATGA-A--TAC--TG---A---AAT-AAAACAT-AACATA--AA-CT---------AAA-------A-A--TA-----AACAGGGGA--AGAG-AT-CCAAATGAT-AGCATT--CAGGTGAAATTTAA-------GT--GCAT-G-TACATCATGT-ATT-AT-AT----------TAAT-ACA-ATATCAATTATTA------CATTG-AT-GAAG-TGCA-A----ATAA---TGTTTCAGTAGTAGA---TGCCA--------CATT-ATATTCA-AGTATATT----------------CT--G---CGACAACATT-GCATCTT-TTCTCATGACAATTATTTATGTA--GTCAGCAAGACAAGT-TA-TCATATTA-----------CTGTCTT--C---AT-TTGACATA--A-----------GC----CATATCAATCTATCTCTA--TCTAA---A-AGC-----AAG-------------GAA--AA----GTT--GA-AA--T-------T-TTCATCTATCACGTAATTTGCAA-ATC-CTTGTCTGT-ATTGTT--------CCT-----AAGTT-----GG----GCAT-TCAAACATAAAATGAA-TTTCATCTTCTACT-GCGTCTGGATTACAAAGTTTACATTTTCGATCTGCTT-CAGGGACATTTTTGTA-TCTGCCAATTTCAATTTC----TAGCT-T-ATGTGAACTG--A--TGCGGAAATTTGTGAAACATT---TAAGAATATGGGGTTTTACTATGACAAAAAGGTA-TTTTTCCTT-TGAA----AAG-CTTCTTTTGAAT---AATCCGTATGTTCGTAAt
gi|4 : tagTTAT---TTCCAATT-T-TG-GACC-CATTAAGAGTATTCAGAAT-AAATATAAC-GTGA-G--TGT--TT---A---CAT-AAA--GT-AACAT-------------------A-------A-A--TA-----ACCAGGGTATCAAAG-AT-CCAAATAAT-AGCACT--AAGGTGAAA-------------C--TCA--A-TACACAATGT-ATCAAT-AATCAAATTAATTAAT-ATA-ATGTCAATTATTG------CATGT-AT-AAATATACA-A----A--G---TGTTATGACAGTAGA---TGGCGTAAAATGCCATA-AAATTAT-GGTATGC--TACTTAGCT-TATGCCT--GACTNNNNNNNNNN-NNNNNNN-NNNNNNNNNNNNNNNNNNNNNNN--NNNNNNNATAC-AGTGTA--TATATT--------------GTCTG--CAAAAC-A---------A-----------GT----TATATCA--CTATTTTCA--TTTGACATA-AGCCATATAAATCTATCTTTATTTGAACGCA----GTG--AG-AA--TTTGGTCTT-TTCTTCTATCGTATGATTTACAA-ATT-GTTGTCTAT-ATTGTT--------CAT-----AAGTA-----GG----GCAT-TCAAAAAC-AAGTGAA-TTTCATCATCTACA-GAGTCTGAATTACAAAATTTACATTTGCGGTCTGCTA-CAAGGACA-TATTGTG-TCTGCCAATTTCAATTTTTTTATAGTT-T-ACGTGAGCTG--------------------AACAGT---GAAAAATATAG-----TA--ATGGTAGAAAAATA-TTTTCCCTTGG--A----GAG-CTTCTTTTGAAT---CGTCCATAAGTTCGTAACTTGCGCTTTT-AATT-tgtacatctccgatgtataaaaagt
gi|5 : TA--AA-C----------AAA-------A-A--TACAGATAACAGGGAA--AGAG-AT-CCAATTGAT-AGCACTTTCAGGTCAAA---AG-------G-------------A--ATGT-ATT-ATCAA----------TGATCATTAGTATCAATTATAATGGCGGCATTG-ATTAAAT-TGCC-------------CTTTA-AATAGTAGAGAATGGCA--------CATT-AGAT----GATCC-TTCTAGT--GGTATATGCCTTGG---CGATAACATTCGCATGTCGTTCTCATGACATT-A-ATATGTA--GTCAGCAAGACAAGT-TAGTTATATTAGCTACTGATTGTCGTTTT--CT--AT-T---------ATGACCATGAAGGC----CATATCAATCTATCTCTACTTTTGA---AGAGC-----AAGTTC----------GGA--AATATTGTTACGGTAA--TGTA----T-TTAATC-ATCATGTGATT-ACAA-ATC-CTTGTCTGT-ATTGT---------CATTGTGAAGGTT-----GG----GCAT-TCAA-CATAAAATGTACTTTCATCTTCCTCGCGAG----AGT--CAAGTTTTACATTT-CGGTCTGCTAACAGGGACATTGTTGTACTCTGCCAATTTAAGTTTC----TAGCT-T-ATGTGggtaata
gi|6 : atagtatatctttaatttttttccatatttttttggaacaaaattggtgaacacatcggacattgtgaatTTAAACAC-TTTTGATTGTAGA-TCTGAAGAAA---AGATGTT-ATCGCA-GGAT--ACGCT--TTAGTT------------GATTCA--GT-AAAAAAAAATAAAC-ACTGCATTCAAACATCAATTC-TTTTTGTTA-TCAT--T--CAAAAT-CA--TATT----TTC--TTGAAGTGCACTCTCA-AGC-AAAGTATA---------------ATTTGATTTATG-AATGT-GTT---GT-AAAC--A--TTTAACA--GT-ATTGG-G--TAAGGTTTCAATATATATAATGGATACCTACCTAATTCCCCCA----TAACTGCAT--AGTTTGAA--TTTTCTTATGTAC
gi|7 : TTG-TTA-AGA-T-TGAAGAAACGCAGTTGTTCATCACAAGGATTGATGCG--TAAGTCGCATCGCTGCTAGTTTCATGGTGAAAAAA---TAAACCACTGC--TCAACCAACAATTCTTTTTTGTTATTCATACTAACAAAATGCAGGGATTCCTGTTCGATTG-AGTGCA--CGTG-AGCAAAAGTATCTGATCCCAACTTTTTGTTTGATTTATATGATGTGGTTTTGGTAAAATTAA-TTTTTATAACGTAATTGGAA--TAAGGTTTC-A-ATAccca
gi|8 : ttgaaAATAGAATTA-TAGAATTTAT---TTCCAATT-T-TG-GACC-CATAAAGGGTATTCAGAAC-------------------TAT--TG---A---AAT-AAAACAT-AACATA--AA-CAAAACAAAAAAAA-------A-A--TA-----ATCAGGGGA--AGAG-AT-CCAAATGAT-AGCACT--TAGGTAAAA---AA-------GTACACAT-G-TACAACATGT-ATT-AT-AA----------TAAT-ATT-GTATCAATTATTA------CATTG-AT-AAAT-TGC-----------------TACAATAGTAGA---TGGCA--------CATT-ATATTCA-GGTATATTATTTTCAGGTATAT-CCT--G---CGATAACATT-GCATCTT-agtatcatc
gi|9 : agATTCTGACAAATTATTTTACAATATATTAATAAA---TC-TTTTTTAAG--GT---TT--ATTTAACAC-TTTTGATTG-AAAATCTGAAGCAA---AGATGTC-ATCACA-GGGT--ATTCC--TAATT-------------GATTTA--GC-AAAACA---GAAAC-ACTGC--TCAACCAACAATTC-TTTTTGTTA-TTAT--T--CAATAT-CT--TATT----TTC--TTGAAGTGCACTCTCACAG--AAATTGTT---------------ATTTTATTTATG-AATAT-GTT---GT-AAAT--A--ATTAATA--GT-ATTGG-A--TAGAGTTTCG--ATATTTA
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|24 ): AGGAAAATAATGAAATCAAATCCTCAATGAAAATTCATGATTATACAG
Alignments
lowQualScore : 1111111 1111111111 1111111 33333333333333333333333 11111111111 1 111111 55555555555555555 11111111 1 111 999999999999999999999999999999999999999999999999999999999 111 11111 4444444444444 1111 2222222222 1 11111111 22222 11111 1111 1 1111 44444444444 11111 1 3333333333 111 1 1 1 111 1 2222222 11 111 11 11 5555555555555 11 111 11 11111 111 1111 11 111111 555555555555555 111 33333 11 1111 333 111 22222 11
lowQualScore : 0000000 777 4 4 4 8 2 55 888 3 5555 55 666 666 3 3 44 3 9999999999 3333333 3 44 77777 0 1 44 3 3 3 55 77777777777777777777777 6 4 4 4 88888888888 2 77 222222 4 4 4 88888888888888888 0 777 44444444 4 5 0 0 55 3 1 1 1 77 000 5 5 0 1 4 0 99 6 5 5 0 999999999999999999999999999999999999999999999999999999999 99 111 6 44444 1111111111111 77 2222 77 5 6666666666 5 0 3 5 77 0 88888888 11111 22222 0000 5 1 5 1 66 0 1 1 1 0 0 5 4444 6 6 22 33333333333 1 5 55555 55 2 0 3333333333 8 444 0 0 0 3 4444 2 0 777 0 4444444 33 0 8 0 3 8 8 0 444 8 8 11 11 22 2222222222222 11 8 444 8 11 8 8 33333 1 8 222 7777 11 5 55 0 666666 000000000000000 8 8 444 8 00000 11 8 3333 000 7 777 99999 6 11 6 7 7777
lowQualScore : ....... ... . . . . . .. ... . .... .. ... ... . . .. . .......... ....... . .. ..... . . .. . . . .. ....................... . . . . ........... . .. ...... . . . ................. . ... ........ . . . . .. . . . . .. ... . . . . . . .. . . . . ......................................................... .. ... . ..... ............. .. .... .. . .......... . . . . .. . ........ ..... ..... .... . . . . .. . . . . . . . .... . . .. ........... . . ..... .. . . .......... . ... . . . . .... . . ... . ....... .. . . . . . . . ... . . .. .. .. ............. .. . ... . .. . . ..... . . ... .... .. . .. . ...... ............... . . ... . ..... .. . .... ... . ... ..... . .. . . ....
lowQualScore : 8888888 888 0 0 0 0 5 77 444 6 4444 00 444 444 6 6 66 3 6666666666 1111111 1 22 77777 8 8 66 3 3 6 55 22222222222222222222222 6 0 0 0 66666666666 0 77 888888 4 4 4 99999999999999999 1 888 55555555 4 0 1 1 00 0 4 4 4 99 000 7 7 8 0 8 8 22 3 7 7 1 666666666666666666666666666666666666666666666666666666666 22 777 7 33333 4444444444444 99 1111 99 0 1111111111 0 1 9 7 44 0 11111111 22222 55555 6666 0 0 7 4 11 1 4 3 4 1 0 7 2222 7 7 22 00000000000 4 0 88888 00 5 0 2222222222 0 000 8 0 0 2 8888 5 0 555 0 5555555 88 8 0 6 2 0 0 6 000 0 0 00 00 22 0000000000000 00 0 000 0 00 0 0 00000 4 0 444 0000 00 6 66 6 444444 000000000000000 0 0 000 0 44444 00 0 0000 000 3 777 33333 7 00 7 3 7777
consensus : AATAGAAT-A-TN--ATTTAT---TTCCAATT-T-TG-GACC-CATTAAGGGTATTCAGAAC-AAATGTAAC-ATGA-A--TAT--TG---A---AAT-AAAACAT-AACATA--AA-C----------AAA-------A-A--TA-----AACAGGGGA--AGAG-AT-CCAAATGAT-AGCACT--CAGGTAAAA---AA-------GT--ACAT-G-TACACCATGT-ATT-AT-AA----------TAAT-ATT-GTATCAATTATTA------CATTG-AT-AAAT-TGCA-A----A--A---TGTTACAATAGTAGA---TGGCA--------CATT-ATATTCA-GGTATATTATATTCAGGTATAT-CCT--G---CGATAACATT-GCATCTT-TTCTCATGACATTTATATATGTA--GTCAGCAAGACGAGT-TA-TTATATTA-----------CCGTCTT--C---AT-T---------A-----------GC----CATATCAATCTATCTCTA--TTTGA---A-AGC-----AAG-------------GAA--AA----GTT--GG-AA--T-------T-TTCATCTATCATGTGATTTACAA-ATC-CTTGTCTGT-ATTGTT--------CAT-----AAGTT-----GG----GCAT-TCAAACATAAAATGNA-TTTCGTCTTCTACG-GAGTCTGAATTACAAAGTTTACATTTTCGGTCTGCTA-CAGGGACATTTTTGTA-TCTGCCAATTTCAATTTC----TAGCT-T-ATGTGAGCTG--A--T--GGAAGTTTGTGAAACATT---NAAGAATATGGGGTTTTACTATGGCAGAAAGGTA-TTTTCCCTTGGGAA----GAG-CTTCTTTTGAAT---AATCCATATGTTCGTAACTTGCCCTTTT-CATT-TTTAGCACATTCTGACAAATTACTTCGCCATATAT-AATAAA---TC-TTTTTCTAA--GT---TT--ATTAAACAC-TTTTGATTG-AGA-TCTGAAGAAA---AGATGTT-ATCGCA-GGAT--ATGCC--TTAGT-------------GATTCA--GT-AAAAAA---TAAAC-ACTGC--TCAACCAACAATTC-TTTTTGTTA-TCAT--T--CAAAAT-CA--TATT----TTC--TTGAAGTGCACTCTCG-AGC-AAAGTATC---------------GTTTGATTTATG-AATGT-GTT---GT-AAAT--A-TTTTAATA--GT-ATTGG-A--TAAGGTTTCGA-ATATATAATGGATAACTACCT-A-TTCCCC-CA-CTAACTGCATAGAGTTTGAAGGCTTTCTTATGTACA
Reference ( family-754 ) : AATAGAAT-A-TN--ATTTAT---TTCCAATT-T-TG-GACC-CATTAAGGGTATTCAGAAC-AAATGTAAC-ATGA-A--TAT--TG---A---AAT-AAAACAT-AACATA--AA-C----------AAA-------A-A--TA-----AACAGGGGA--AGAG-AT-CCAAATGAT-AGCACT--CAGGTAAAA---AA-------GT--ACAT-G-TACACCATGT-ATT-AT-AA----------TAAT-ATT-GTATCAATTATTA------CATTG-AT-AAAT-TGCA-A----A--A---TGTTACAATAGTAGA---TGGCA--------CATT-ATATTCA-GGTATATTATATTCAGGTATAT-CCT--G---CGATAACATT-GCATCTT-TTCTCATGACATTTATATATGTA--GTCAGCAAGACGAGT-TA-TTATATTA-----------CCGTCTT--C---AT-T---------A-----------GC----CATATCAATCTATCTCTA--TTTGA---A-AGC-----AAG-------------GAA--AA----GTT--GG-AA--T-------T-TTCATCTATCATGTGATTTACAA-ATC-CTTGTCTGT-ATTGTT--------CAT-----AAGTT-----GG----GCAT-TCAAACATAAAATGNA-TTTCGTCTTCTACG-GAGTCTGAATTACAAAGTTTACATTTTCGGTCTGCTA-CAGGGACATTTTTGTA-TCTGCCAATTTCAATTTC----TAGCT-T-ATGTGAGCTG--A--T--GGAAGTTTGTGAAACATT---NAAGAATATGGGGTTTTACTATGGCAGAAAGGTA-TTTTCCCTTGGGAA----GAG-CTTCTTTTGAAT---AATCCATATGTTCGTAACTTGCCCTTTT-CATT-TTTAGCACATTCTGACAAATTACTTCGCCATATAT-AATAAA---TC-TTTTTCTAA--GT---TT--ATTAAACAC-TTTTGATTG-AGA-TCTGAAGAAA---AGATGTT-ATCGCA-GGAT--ATGCC--TTAGT-------------GATTCA--GT-AAAAAA---TAAAC-ACTGC--TCAACCAACAATTC-TTTTTGTTA-TCAT--T--CAAAAT-CA--TATT----TTC--TTGAAGTGCACTCTCG-AGC-AAAGTATC---------------GTTTGATTTATG-AATGT-GTT---GT-AAAT--A-TTTTAATA--GT-ATTGG-A--TAAGGTTTCGA-ATATATAATGGATAACTACCT-A-TTCCCC-CACCTAACTGCATAGAGTTTGAAGGCTTTCTTATGTACA
gi|1 : AATAGAAC-A-TA--ATTTAT---TTCCAATT-T-TG-GACC-CATTAAGGGTATTCAGAAC-AAATGTAAC-ATGA-A--TAT--TG---A---AAT-AAAACAT-AACATA--AA-C----------AAA-------A-A--TA-----AACAGGGGA--AGAG-AT-CCAAATGAT-AGCACT--CAGGTAAAA---TA-------GT--ACAT-G-TGCACCATGT-ATT-AT-AA----------TAAT-ATT-GTATCAACCATTA------TATTG-AT-AAAG-TGCA-A----A--AAAATGTTACAATAGTAGA---TGACA--------CATT-ATATTCA-GGTATATTATATTCAGGTATAT-CCT--G---CGATAACATT-ACATCTT-TTCTCATGACATTTATATATATATAGTCAGCAAGACAAGT-TA-TTATATTA-----------CTGTCTT--C---AT-T-------------------------------TCAATCTATCTCTA--GTTGA---A-TGC-----AAG-------------GAA--AA----GTT--GG-AA--T-------T-TTCATCTATCATGTGATTTACAA-ATC-CTTGTCTAT-ATTGTT--------CAT-----AAGTT-----GG----GCAT-TCAAACATAAAATGTA-TTTCATCTTCTATG-GAGTCTGAATTACAAAGTTTACATTTTCGGTCTGCTA-TTGGGACATTTTTGTA-TCTGCCAATTTCAATTTC----TAGCT-T-ATGTG----------------AGTTTGTGAAACATT---GAAGAATATGGGGTTTTACTAAAACAGAAAGGTATTTTTCCCTTGAGAAGCTTGAGCCTTCTTTTGAAT---AATGCCTATGTTCGTAACTTGCCCTTTT-CATT-TTTAGCAC--TCTGACAAATTACTTTGCCATATAT-AATAAA---TC-TTTTTCTAA--GTTCATT--ATTAAACAC-TTTTGATTG-AGA-TCTGAAGAAA---AGATGTT-GTCGCA-GGAT--ATGCC--CTAGT-------------GATTCA--GT-AAAAAA---TAAAC-ACTG---TCAACCAACAATTC-TTTTTGTTA-TCAT--T--CAAAAT-CA--TATT----TTC--TT--AGTGCACTCTCA-AGC-AAAGTATC---------------ATTTGATTTATG-AATGT-GTT---GT-AAAT--ATTTTTAATA--GT-ATTGG-A--TAAGGTTTC---ATATATAATGGAT-ATTACCT-A-CCCCCCACCCCTAACTGCATAAAGTTTGAAGGC--TCTTATGTACA
gi|10 : AATAGAAT-A-TT--ATTTAT---TTCCAATT-T-TG-GACC-CATTAAGAGTATTCAGAAC-AAATGTAAC-ATGA-A--TAT--TG---A---AAT-AAAACAT-AAAATA--AA-CA---------AAA-------A-A--TA-----GAGAGAGGG--AAAA-TT-CCAAATGAT-AGCACT--CAGGTGAAATTTAA-------GA--ACAT-G-TACACCATGT-ACC-AT-AT----------TAAT-AAA-ATATCAATTATCA------CATTG-AT-AAAG-TGCA-AAAACA--A---TGTTGCAATAGTAGA---TGGCA--------CAc
gi|11 : ataaaA--------CATTTATATTTA-G-T-CACCATATTCAGGTAT-T-CTT--G---CAATAACATT-TCATCTT-TTC-----------ATATATGTA--GTCAGCAAGACGAGT-TA-TTATAT------------------TTGAC---ATAC---------A-----------GCCATGCATATCAATCTATCTCTA--TTTGA---A-AGC-----AAG-------------GAA--AA----GTC--TG-CA--T-------TGTTCAT
gi|11 : GTCTGC-ATTGTT--------CAT-----AAGTT-----GG----GCAT-TCAAACATAAAATGAA-TTTCGTCTTCTACA-AAGTCTGA--------------ATTTTCGGTCTGCAA-CAGAGACaagttgggcattcaaacataaaatgaatttcgtcttctacaaagtctgaattttcggtctgcaacagagact
gi|12 : acatttatatttagtcaccatattcaggtattcttgcaataacatttcatcttttcatatatgtagtcagcaagacgagttattatatttgacatacagccatgcatatcaatctatctctatttgaaagcaaggaaaa----------AAA-------A-A--TA-----ATCAGGG-A--AGTG-AT-CCAAATGAT-AGCACT--TAGGTAAAA---AA-------GT--ACATTG-TACAACATGT-ATT-AT-AA----------TAAT-AT--GTATCAATTATTA------CATTG-AT-AAAT-TGC-----------------TAAAATAGTAGA---TGGCA--------CATT-ATATTCA-GGTATATTATATTCAGGTATAT-CCT--G---CGATAACATT-GCATCTT-TTCTCATGACATTTATATATATA--GTCAGCAAGACAAGT-TA-TTATATTA-----------Ct
gi|13 : AATAGAAT----------TAT---TTCCAATT-T-TT-GGCCACA-TAAAGGTATTCAGAAC-AAAT-T-AC-ATGA-AATCAT--TG---A---AAT-AAAACAT-A----A--AA-C----------AAA-------A-A--TA-----AACAGGGGA--AGAGAATGCCAAATGAT-AGCATT--CAGGTAAAACG-AA-------GT--ACAT-GTTACA-CATGT-ATT-AT-A------------AATAATT-GTATCAA-TA-TA------CATTGAAT-AAAT-TGCACA----A--A------TAC--------------CCA--------CATT-ATACTCAGGGTAT
gi|14 : aaagga-AA--T-------T-TTGATTTTGAATGCAATCCACAA-AT---TTGT-TGTTGTTGTT--------TAT-----AAATA-----GACAGAACAT-TCAAGGATAAATTTAC-TCTAGTTTTGTATG-AAATCTAAATTACACACCCAACATTTTTGGTCTGATAACAGGAATATTTTT-TA-TCTGTCTATTTCAATTTC----CAAATGT-ATGAAAGCTA--ATTT--GAAAATTT-TTAAACATT---T-AGAA
gi|15 : ATAAAGGGTATTCAGAAC-------------------TAT--TA---A---AAT-AAAACAT-AACATA--AA-C----------AAA-------A-AAATA-----ATCAGGG-A--AGAG-AT-CCAAATGAT-AGCACT--TGGGTAAAA---AA-------------------AAACCATGT-ATT-AT-AA----------TAAT-ATT-GTATCAATTATTA------CATTG-AT-AAAT-TGC-----------------TACAATAGTAGA---TGGCA--------CATT-ATATTC
gi|16 : gAG-CTTCTTTTTGATTTTAATCCATATGT-CGTAACTTGCCCTTTTTCATTGTTTAGCACATTCTGACAAATTACTTCGCCATATAT-TATTAAGAGTCTTTTTTCTAAAGGT---TTCAATTAAACACATGTTGAT
gi|17 : aAATAGAAT-AATA--ATGTAT---TTC-AATT-TATG-GACT-CATTAAGGGTA-TCAGAAC-CAATGTAACAACGT-A--TAT--TGCCAA---GAT--AAACAT-AACAT---AA-C----------AAA-------A-A---A-----TACAGGGGA--AGAG-AT-CCAAag
gi|18 : aaag-A-TG--ATTTATCCTTTCCAATTAC-TGTGATCTCCTTAAGGGTATTCAGAACAAAATGTAAC-ATAAGA--CATGATG---ATATAAT-AACGCATGAAAGTACTAA-C----------AAAT------ATA--TA-----AACAG
gi|19 : aacaC-----AAG-------------AGA--AA----ATT--GG-AAATT-------T-TTCATCCATCATGTGATTTAAAATATTACTTGTCTGTAATTGCTGTGATATACATTTA--GAGTTCGCGAAG----GCATATCAAACACAA
gi|2 : AAAACGAGT-TA-T---ATCA-----------TCATCTT--C---AT-TTGACATTTAA-----------GC----CATATCAATCCATCTCTA--TTTGA---A-AGC-----AAG-------------GAT--TA----GTG--GG-AA--A-------T-TTCATCTATCAGGTGGCCAACAA-ATC-CTTGTCTGT-ATTGTT--------CAT-----AAGCT-----GG----ACAT-TCAAACATAAAATGTA-TTTCATCTTCTACA-GAGTCTGAATTACACAGTTTACATTTTCGGTCTGCTT-CAGGGACATTTCTGTA-CCTGCCAATTTCAATTTC----TAGTT-TAATGTGAACTGATA--T--GGAAGTTTGTGAAACATTTTAAAAGAATATGGGCTTTTACTATGGTAGAAAAGTA-TTTTCCCTTGG--A----TAG-TTTCTTTTGAAT---AATCCATATGTTCGTAATCTACCCTTTT-CATT-TGCAACACATTCTGACCAGTTAT-----------T-AATAAA---TC-CTTCCCTAA--G----TT--AGAAAAC-----------------TCTGAAGCAA---AGATGTT-TTCACA-GGAT--ATTCCAATT--T-------------GATTCA--GC-CAAGAT---TAAAC-ACTGC--TCAACCAACAATTC-GTTTTGCTA-TTAT--T--CAATAT-CT--TATT----TTC--TTGAAGTG-------------------TC---------------GTTTGATTTATA-AATAT-GCT---GT-AACT--A--TTGGATA--GT-ATTGG-ATTTAAAGTTTCAA-ATATATAATGGATAACTACCT-ATTTCCCC-CA-TTAA-TGTATAGA--TTG-AGGCTTTCTTATGTACA
gi|20 : -T-TG-GACC-CATAAAGGGTATTCAGAAC-AAAT--AAC-AAGA-A--AAT--TG---A---AAT-AAAACAT-AACATA--AA-C----------AAAAAAAAATA-A--TA-----ATCAGGGGA--AGAG-AT-CCAAATGAT-tgagagtttaccacttagatgttttcaaggaattttcaatatcataaattggtctcttagcagcagcatattctgaaat
gi|21 : AAGAGAAT-A-TC--ATTTAT---TTCCAATA-C-TG-GACC-CAT------TATTCAGAAC-AAATAT-TT-ATGA-A--TAT--TG---A---AATAAAAACAT-AAAATA--GACC----------AAA-------A-A--TA-----AA
gi|22 : tagAGGGGA--AGAA-AT-CC--ATGATGAGCACT--TA-GTAAAA---AAAAAAAACG---ACAT---TACACCATGTAATG-AT-AA----------TAATAATT-GT
gi|23 : AGTTTACATTTTCGGTCTGCTA-CAGGAACATATTTGTA-TCTGCCAATTTtat
gi|3 : AATAGAAT-A-TC--ATTTAT---TTTCAATT-T-TG-GATC-CATTAAGGGTATTCAGAAC-AAATGTAAC-ATGA-A--TAC--TG---A---AAT-AAAACAT-AACATA--AA-CT---------AAA-------A-A--TA-----AACAGGGGA--AGAG-AT-CCAAATGAT-AGCATT--CAGGTGAAATTTAA-------GT--GCAT-G-TACATCATGT-ATT-AT-AT----------TAAT-ACA-ATATCAATTATTA------CATTG-AT-GAAG-TGCA-A----ATAA---TGTTTCAGTAGTAGA---TGCCA--------CATT-ATATTCA-AGTATATT----------------CT--G---CGACAACATT-GCATCTT-TTCTCATGACAATTATTTATGTA--GTCAGCAAGACAAGT-TA-TCATATTA-----------CTGTCTT--C---AT-TTGACATA--A-----------GC----CATATCAATCTATCTCTA--TCTAA---A-AGC-----AAG-------------GAA--AA----GTT--GA-AA--T-------T-TTCATCTATCACGTAATTTGCAA-ATC-CTTGTCTGT-ATTGTT--------CCT-----AAGTT-----GG----GCAT-TCAAACATAAAATGAA-TTTCATCTTCTACT-GCGTCTGGATTACAAAGTTTACATTTTCGATCTGCTT-CAGGGACATTTTTGTA-TCTGCCAATTTCAATTTC----TAGCT-T-ATGTGAACTG--A--TGCGGAAATTTGTGAAACATT---TAAGAATATGGGGTTTTACTATGACAAAAAGGTA-TTTTTCCTT-TGAA----AAG-CTTCTTTTGAAT---AATCCGTATGTTCGTAAt
gi|4 : tagTTAT---TTCCAATT-T-TG-GACC-CATTAAGAGTATTCAGAAT-AAATATAAC-GTGA-G--TGT--TT---A---CAT-AAA--GT-AACAT-------------------A-------A-A--TA-----ACCAGGGTATCAAAG-AT-CCAAATAAT-AGCACT--AAGGTGAAA-------------C--TCA--A-TACACAATGT-ATCAAT-AATCAAATTAATTAAT-ATA-ATGTCAATTATTG------CATGT-AT-AAATATACA-A----A--G---TGTTATGACAGTAGA---TGGCGTAAAATGCCATA-AAATTAT-GGTATGC--TACTTAGCT-TATGCCT--GACTNNNNNNNNNN-NNNNNNN-NNNNNNNNNNNNNNNNNNNNNNN--NNNNNNNATAC-AGTGTA--TATATT--------------GTCTG--CAAAAC-A---------A-----------GT----TATATCA--CTATTTTCA--TTTGACATA-AGCCATATAAATCTATCTTTATTTGAACGCA----GTG--AG-AA--TTTGGTCTT-TTCTTCTATCGTATGATTTACAA-ATT-GTTGTCTAT-ATTGTT--------CAT-----AAGTA-----GG----GCAT-TCAAAAAC-AAGTGAA-TTTCATCATCTACA-GAGTCTGAATTACAAAATTTACATTTGCGGTCTGCTA-CAAGGACA-TATTGTG-TCTGCCAATTTCAATTTTTTTATAGTT-T-ACGTGAGCTG--------------------AACAGT---GAAAAATATAG-----TA--ATGGTAGAAAAATA-TTTTCCCTTGG--A----GAG-CTTCTTTTGAAT---CGTCCATAAGTTCGTAACTTGCGCTTTT-AATT-tgtacatctccgatgtataaaaagt
gi|5 : TA--AA-C----------AAA-------A-A--TACAGATAACAGGGAA--AGAG-AT-CCAATTGAT-AGCACTTTCAGGTCAAA---AG-------G-------------A--ATGT-ATT-ATCAA----------TGATCATTAGTATCAATTATAATGGCGGCATTG-ATTAAAT-TGCC-------------CTTTA-AATAGTAGAGAATGGCA--------CATT-AGAT----GATCC-TTCTAGT--GGTATATGCCTTGG---CGATAACATTCGCATGTCGTTCTCATGACATT-A-ATATGTA--GTCAGCAAGACAAGT-TAGTTATATTAGCTACTGATTGTCGTTTT--CT--AT-T---------ATGACCATGAAGGC----CATATCAATCTATCTCTACTTTTGA---AGAGC-----AAGTTC----------GGA--AATATTGTTACGGTAA--TGTA----T-TTAATC-ATCATGTGATT-ACAA-ATC-CTTGTCTGT-ATTGT---------CATTGTGAAGGTT-----GG----GCAT-TCAA-CATAAAATGTACTTTCATCTTCCTCGCGAG----AGT--CAAGTTTTACATTT-CGGTCTGCTAACAGGGACATTGTTGTACTCTGCCAATTTAAGTTTC----TAGCT-T-ATGTGggtaata
gi|6 : atagtatatctttaatttttttccatatttttttggaacaaaattggtgaacacatcggacattgtgaatTTAAACAC-TTTTGATTGTAGA-TCTGAAGAAA---AGATGTT-ATCGCA-GGAT--ACGCT--TTAGTT------------GATTCA--GT-AAAAAAAAATAAAC-ACTGCATTCAAACATCAATTC-TTTTTGTTA-TCAT--T--CAAAAT-CA--TATT----TTC--TTGAAGTGCACTCTCA-AGC-AAAGTATA---------------ATTTGATTTATG-AATGT-GTT---GT-AAAC--A--TTTAACA--GT-ATTGG-G--TAAGGTTTCAATATATATAATGGATACCTACCTAA-TTCCCC-CA--TAACTGCAT--AGTTTGAA--TTTTCTTATGTAC
gi|7 : TTG-TTA-AGA-T-TGAAGAAACGCAGTTGTTCATCACAAGGATTGATGCG--TAAGTCGCATCGCTGCTAGTTTCATGGTGAAAAAA---TAAACCACTGC--TCAACCAACAATTCTTTTTTGTTATTCATACTAACAAAATGCAGGGATTCCTGTTCGATTG-AGTGCA--CGTG-AGCAAAAGTATCTGATCCCAACTTTTTGTTTGATTTATATGATGTGGTTTTGGTAAAATTAA-TTTTTATAACGTAATTGGAA--TAAGGTTTC-A-ATAccca
gi|8 : ttgaaAATAGAATTA-TAGAATTTAT---TTCCAATT-T-TG-GACC-CATAAAGGGTATTCAGAAC-------------------TAT--TG---A---AAT-AAAACAT-AACATA--AA-CAAAACAAAAAAAA-------A-A--TA-----ATCAGGGGA--AGAG-AT-CCAAATGAT-AGCACT--TAGGTAAAA---AA-------GTACACAT-G-TACAACATGT-ATT-AT-AA----------TAAT-ATT-GTATCAATTATTA------CATTG-AT-AAAT-TGC-----------------TACAATAGTAGA---TGGCA--------CATT-ATATTCA-GGTATATTATTTTCAGGTATAT-CCT--G---CGATAACATT-GCATCTT-agtatcatc
gi|9 : agATTCTGACAAATTATTTTACAATATATTAATAAA---TC-TTTTTTAAG--GT---TT--ATTTAACAC-TTTTGATTG-AAAATCTGAAGCAA---AGATGTC-ATCACA-GGGT--ATTCC--TAATT-------------GATTTA--GC-AAAACA---GAAAC-ACTGC--TCAACCAACAATTC-TTTTTGTTA-TTAT--T--CAATAT-CT--TATT----TTC--TTGAAGTGCACTCTCACAG--AAATTGTT---------------ATTTTATTTATG-AATAT-GTT---GT-AAAT--A--ATTAATA--GT-ATTGG-A--TAGAGTTTCG--ATATTTA
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|24 ): AGGAAAATAATGAAATCAAATCCTCAATGAAAATTCATGATTATACAG
Alignments
lowQualScore : 1111111 1111111111 1111111 33333333333333333333333 11111111111 1 111111 55555555555555555 11111111 1 111 999999999999999999999999999999999999999999999999999999999 111 11111 4444444444444 1111 2222222222 1 11111111 22222 11111 1111 1 1111 44444444444 11111 1 3333333333 111 1 1 1 111 1 2222222 11 111 11 11 5555555555555 11 111 11 11111 111 1111 11 111111 555555555555555 111 33333 11 1111 333 111 11 1 11
lowQualScore : 0000000 777 4 4 4 8 2 55 888 3 5555 55 666 666 3 3 44 3 9999999999 3333333 3 44 77777 0 1 44 3 3 3 55 77777777777777777777777 6 4 4 4 88888888888 2 77 222222 4 4 4 88888888888888888 0 777 44444444 4 5 0 0 55 3 1 1 1 77 000 5 5 0 1 4 0 99 6 5 5 0 999999999999999999999999999999999999999999999999999999999 99 111 6 44444 1111111111111 77 2222 77 5 6666666666 5 0 3 5 77 0 88888888 11111 22222 0000 5 1 5 1 66 0 1 1 1 0 0 5 4444 6 6 22 33333333333 1 5 55555 55 2 0 3333333333 8 444 0 0 0 3 4444 2 0 777 0 4444444 33 0 8 0 3 8 8 0 444 8 8 11 11 22 2222222222222 11 8 444 8 11 8 8 33333 1 8 222 7777 11 5 55 0 666666 000000000000000 8 8 444 8 00000 11 8 3333 000 7 777 88 2 6 11 6 7 7777
lowQualScore : ....... ... . . . . . .. ... . .... .. ... ... . . .. . .......... ....... . .. ..... . . .. . . . .. ....................... . . . . ........... . .. ...... . . . ................. . ... ........ . . . . .. . . . . .. ... . . . . . . .. . . . . ......................................................... .. ... . ..... ............. .. .... .. . .......... . . . . .. . ........ ..... ..... .... . . . . .. . . . . . . . .... . . .. ........... . . ..... .. . . .......... . ... . . . . .... . . ... . ....... .. . . . . . . . ... . . .. .. .. ............. .. . ... . .. . . ..... . . ... .... .. . .. . ...... ............... . . ... . ..... .. . .... ... . ... .. . . .. . . ....
lowQualScore : 8888888 888 0 0 0 0 5 77 444 6 4444 00 444 444 6 6 66 3 6666666666 1111111 1 22 77777 8 8 66 3 3 6 55 22222222222222222222222 6 0 0 0 66666666666 0 77 888888 4 4 4 99999999999999999 1 888 55555555 4 0 1 1 00 0 4 4 4 99 000 7 7 8 0 8 8 22 3 7 7 1 666666666666666666666666666666666666666666666666666666666 22 777 7 33333 4444444444444 99 1111 99 0 1111111111 0 1 9 7 44 0 11111111 22222 55555 6666 0 0 7 4 11 1 4 3 4 1 0 7 2222 7 7 22 00000000000 4 0 88888 00 5 0 2222222222 0 000 8 0 0 2 8888 5 0 555 0 5555555 88 8 0 6 2 0 0 6 000 0 0 00 00 22 0000000000000 00 0 000 0 00 0 0 00000 4 0 444 0000 00 6 66 6 444444 000000000000000 0 0 000 0 44444 00 0 0000 000 3 777 33 0 7 00 7 3 7777
consensus : AATAGAAT-A-TN--ATTTAT---TTCCAATT-T-TG-GACC-CATTAAGGGTATTCAGAAC-AAATGTAAC-ATGA-A--TAT--TG---A---AAT-AAAACAT-AACATA--AA-C----------AAA-------A-A--TA-----AACAGGGGA--AGAG-AT-CCAAATGAT-AGCACT--CAGGTAAAA---AA-------GT--ACAT-G-TACACCATGT-ATT-AT-AA----------TAAT-ATT-GTATCAATTATTA------CATTG-AT-AAAT-TGCA-A----A--A---TGTTACAATAGTAGA---TGGCA--------CATT-ATATTCA-GGTATATTATATTCAGGTATAT-CCT--G---CGATAACATT-GCATCTT-TTCTCATGACATTTATATATGTA--GTCAGCAAGACGAGT-TA-TTATATTA-----------CCGTCTT--C---AT-T---------A-----------GC----CATATCAATCTATCTCTA--TTTGA---A-AGC-----AAG-------------GAA--AA----GTT--GG-AA--T-------T-TTCATCTATCATGTGATTTACAA-ATC-CTTGTCTGT-ATTGTT--------CAT-----AAGTT-----GG----GCAT-TCAAACATAAAATGNA-TTTCGTCTTCTACG-GAGTCTGAATTACAAAGTTTACATTTTCGGTCTGCTA-CAGGGACATTTTTGTA-TCTGCCAATTTCAATTTC----TAGCT-T-ATGTGAGCTG--A--T--GGAAGTTTGTGAAACATT---NAAGAATATGGGGTTTTACTATGGCAGAAAGGTA-TTTTCCCTTGGGAA----GAG-CTTCTTTTGAAT---AATCCATATGTTCGTAACTTGCCCTTTT-CATT-TTTAGCACATTCTGACAAATTACTTCGCCATATAT-AATAAA---TC-TTTTTCTAA--GT---TT--ATTAAACAC-TTTTGATTG-AGA-TCTGAAGAAA---AGATGTT-ATCGCA-GGAT--ATGCC--TTAGT-------------GATTCA--GT-AAAAAA---TAAAC-ACTGC--TCAACCAACAATTC-TTTTTGTTA-TCAT--T--CAAAAT-CA--TATT----TTC--TTGAAGTGCACTCTCG-AGC-AAAGTATC---------------GTTTGATTTATG-AATGT-GTT---GT-AAAT--A-TTTTAATA--GT-ATTGG-A--TAAGGTTTCGA-ATATATAATGGATAACTACCT-A-TTCCC--CCACTAACTGCATAGAGTTTGAAGGCTTTCTTATGTACA
Reference ( family-754 ) : AATAGAAT-A-TN--ATTTAT---TTCCAATT-T-TG-GACC-CATTAAGGGTATTCAGAAC-AAATGTAAC-ATGA-A--TAT--TG---A---AAT-AAAACAT-AACATA--AA-C----------AAA-------A-A--TA-----AACAGGGGA--AGAG-AT-CCAAATGAT-AGCACT--CAGGTAAAA---AA-------GT--ACAT-G-TACACCATGT-ATT-AT-AA----------TAAT-ATT-GTATCAATTATTA------CATTG-AT-AAAT-TGCA-A----A--A---TGTTACAATAGTAGA---TGGCA--------CATT-ATATTCA-GGTATATTATATTCAGGTATAT-CCT--G---CGATAACATT-GCATCTT-TTCTCATGACATTTATATATGTA--GTCAGCAAGACGAGT-TA-TTATATTA-----------CCGTCTT--C---AT-T---------A-----------GC----CATATCAATCTATCTCTA--TTTGA---A-AGC-----AAG-------------GAA--AA----GTT--GG-AA--T-------T-TTCATCTATCATGTGATTTACAA-ATC-CTTGTCTGT-ATTGTT--------CAT-----AAGTT-----GG----GCAT-TCAAACATAAAATGNA-TTTCGTCTTCTACG-GAGTCTGAATTACAAAGTTTACATTTTCGGTCTGCTA-CAGGGACATTTTTGTA-TCTGCCAATTTCAATTTC----TAGCT-T-ATGTGAGCTG--A--T--GGAAGTTTGTGAAACATT---NAAGAATATGGGGTTTTACTATGGCAGAAAGGTA-TTTTCCCTTGGGAA----GAG-CTTCTTTTGAAT---AATCCATATGTTCGTAACTTGCCCTTTT-CATT-TTTAGCACATTCTGACAAATTACTTCGCCATATAT-AATAAA---TC-TTTTTCTAA--GT---TT--ATTAAACAC-TTTTGATTG-AGA-TCTGAAGAAA---AGATGTT-ATCGCA-GGAT--ATGCC--TTAGT-------------GATTCA--GT-AAAAAA---TAAAC-ACTGC--TCAACCAACAATTC-TTTTTGTTA-TCAT--T--CAAAAT-CA--TATT----TTC--TTGAAGTGCACTCTCG-AGC-AAAGTATC---------------GTTTGATTTATG-AATGT-GTT---GT-AAAT--A-TTTTAATA--GT-ATTGG-A--TAAGGTTTCGA-ATATATAATGGATAACTACCT-A-TTCCC--CCACTAACTGCATAGAGTTTGAAGGCTTTCTTATGTACA
gi|1 : AATAGAAC-A-TA--ATTTAT---TTCCAATT-T-TG-GACC-CATTAAGGGTATTCAGAAC-AAATGTAAC-ATGA-A--TAT--TG---A---AAT-AAAACAT-AACATA--AA-C----------AAA-------A-A--TA-----AACAGGGGA--AGAG-AT-CCAAATGAT-AGCACT--CAGGTAAAA---TA-------GT--ACAT-G-TGCACCATGT-ATT-AT-AA----------TAAT-ATT-GTATCAACCATTA------TATTG-AT-AAAG-TGCA-A----A--AAAATGTTACAATAGTAGA---TGACA--------CATT-ATATTCA-GGTATATTATATTCAGGTATAT-CCT--G---CGATAACATT-ACATCTT-TTCTCATGACATTTATATATATATAGTCAGCAAGACAAGT-TA-TTATATTA-----------CTGTCTT--C---AT-T-------------------------------TCAATCTATCTCTA--GTTGA---A-TGC-----AAG-------------GAA--AA----GTT--GG-AA--T-------T-TTCATCTATCATGTGATTTACAA-ATC-CTTGTCTAT-ATTGTT--------CAT-----AAGTT-----GG----GCAT-TCAAACATAAAATGTA-TTTCATCTTCTATG-GAGTCTGAATTACAAAGTTTACATTTTCGGTCTGCTA-TTGGGACATTTTTGTA-TCTGCCAATTTCAATTTC----TAGCT-T-ATGTG----------------AGTTTGTGAAACATT---GAAGAATATGGGGTTTTACTAAAACAGAAAGGTATTTTTCCCTTGAGAAGCTTGAGCCTTCTTTTGAAT---AATGCCTATGTTCGTAACTTGCCCTTTT-CATT-TTTAGCAC--TCTGACAAATTACTTTGCCATATAT-AATAAA---TC-TTTTTCTAA--GTTCATT--ATTAAACAC-TTTTGATTG-AGA-TCTGAAGAAA---AGATGTT-GTCGCA-GGAT--ATGCC--CTAGT-------------GATTCA--GT-AAAAAA---TAAAC-ACTG---TCAACCAACAATTC-TTTTTGTTA-TCAT--T--CAAAAT-CA--TATT----TTC--TT--AGTGCACTCTCA-AGC-AAAGTATC---------------ATTTGATTTATG-AATGT-GTT---GT-AAAT--ATTTTTAATA--GT-ATTGG-A--TAAGGTTTC---ATATATAATGGAT-ATTACCT-A-CCCCCCACCCCTAACTGCATAAAGTTTGAAGGC--TCTTATGTACA
gi|10 : AATAGAAT-A-TT--ATTTAT---TTCCAATT-T-TG-GACC-CATTAAGAGTATTCAGAAC-AAATGTAAC-ATGA-A--TAT--TG---A---AAT-AAAACAT-AAAATA--AA-CA---------AAA-------A-A--TA-----GAGAGAGGG--AAAA-TT-CCAAATGAT-AGCACT--CAGGTGAAATTTAA-------GA--ACAT-G-TACACCATGT-ACC-AT-AT----------TAAT-AAA-ATATCAATTATCA------CATTG-AT-AAAG-TGCA-AAAACA--A---TGTTGCAATAGTAGA---TGGCA--------CAc
gi|11 : ataaaA--------CATTTATATTTA-G-T-CACCATATTCAGGTAT-T-CTT--G---CAATAACATT-TCATCTT-TTC-----------ATATATGTA--GTCAGCAAGACGAGT-TA-TTATAT------------------TTGAC---ATAC---------A-----------GCCATGCATATCAATCTATCTCTA--TTTGA---A-AGC-----AAG-------------GAA--AA----GTC--TG-CA--T-------TGTTCAT
gi|11 : GTCTGC-ATTGTT--------CAT-----AAGTT-----GG----GCAT-TCAAACATAAAATGAA-TTTCGTCTTCTACA-AAGTCTGA--------------ATTTTCGGTCTGCAA-CAGAGACaagttgggcattcaaacataaaatgaatttcgtcttctacaaagtctgaattttcggtctgcaacagagact
gi|12 : acatttatatttagtcaccatattcaggtattcttgcaataacatttcatcttttcatatatgtagtcagcaagacgagttattatatttgacatacagccatgcatatcaatctatctctatttgaaagcaaggaaaa----------AAA-------A-A--TA-----ATCAGGG-A--AGTG-AT-CCAAATGAT-AGCACT--TAGGTAAAA---AA-------GT--ACATTG-TACAACATGT-ATT-AT-AA----------TAAT-AT--GTATCAATTATTA------CATTG-AT-AAAT-TGC-----------------TAAAATAGTAGA---TGGCA--------CATT-ATATTCA-GGTATATTATATTCAGGTATAT-CCT--G---CGATAACATT-GCATCTT-TTCTCATGACATTTATATATATA--GTCAGCAAGACAAGT-TA-TTATATTA-----------Ct
gi|13 : AATAGAAT----------TAT---TTCCAATT-T-TT-GGCCACA-TAAAGGTATTCAGAAC-AAAT-T-AC-ATGA-AATCAT--TG---A---AAT-AAAACAT-A----A--AA-C----------AAA-------A-A--TA-----AACAGGGGA--AGAGAATGCCAAATGAT-AGCATT--CAGGTAAAACG-AA-------GT--ACAT-GTTACA-CATGT-ATT-AT-A------------AATAATT-GTATCAA-TA-TA------CATTGAAT-AAAT-TGCACA----A--A------TAC--------------CCA--------CATT-ATACTCAGGGTAT
gi|14 : aaagga-AA--T-------T-TTGATTTTGAATGCAATCCACAA-AT---TTGT-TGTTGTTGTT--------TAT-----AAATA-----GACAGAACAT-TCAAGGATAAATTTAC-TCTAGTTTTGTATG-AAATCTAAATTACACACCCAACATTTTTGGTCTGATAACAGGAATATTTTT-TA-TCTGTCTATTTCAATTTC----CAAATGT-ATGAAAGCTA--ATTT--GAAAATTT-TTAAACATT---T-AGAA
gi|15 : ATAAAGGGTATTCAGAAC-------------------TAT--TA---A---AAT-AAAACAT-AACATA--AA-C----------AAA-------A-AAATA-----ATCAGGG-A--AGAG-AT-CCAAATGAT-AGCACT--TGGGTAAAA---AA-------------------AAACCATGT-ATT-AT-AA----------TAAT-ATT-GTATCAATTATTA------CATTG-AT-AAAT-TGC-----------------TACAATAGTAGA---TGGCA--------CATT-ATATTC
gi|16 : gAG-CTTCTTTTTGATTTTAATCCATATGT-CGTAACTTGCCCTTTTTCATTGTTTAGCACATTCTGACAAATTACTTCGCCATATAT-TATTAAGAGTCTTTTTTCTAAAGGT---TTCAATTAAACACATGTTGAT
gi|17 : aAATAGAAT-AATA--ATGTAT---TTC-AATT-TATG-GACT-CATTAAGGGTA-TCAGAAC-CAATGTAACAACGT-A--TAT--TGCCAA---GAT--AAACAT-AACAT---AA-C----------AAA-------A-A---A-----TACAGGGGA--AGAG-AT-CCAAag
gi|18 : aaag-A-TG--ATTTATCCTTTCCAATTAC-TGTGATCTCCTTAAGGGTATTCAGAACAAAATGTAAC-ATAAGA--CATGATG---ATATAAT-AACGCATGAAAGTACTAA-C----------AAAT------ATA--TA-----AACAG
gi|19 : aacaC-----AAG-------------AGA--AA----ATT--GG-AAATT-------T-TTCATCCATCATGTGATTTAAAATATTACTTGTCTGTAATTGCTGTGATATACATTTA--GAGTTCGCGAAG----GCATATCAAACACAA
gi|2 : AAAACGAGT-TA-T---ATCA-----------TCATCTT--C---AT-TTGACATTTAA-----------GC----CATATCAATCCATCTCTA--TTTGA---A-AGC-----AAG-------------GAT--TA----GTG--GG-AA--A-------T-TTCATCTATCAGGTGGCCAACAA-ATC-CTTGTCTGT-ATTGTT--------CAT-----AAGCT-----GG----ACAT-TCAAACATAAAATGTA-TTTCATCTTCTACA-GAGTCTGAATTACACAGTTTACATTTTCGGTCTGCTT-CAGGGACATTTCTGTA-CCTGCCAATTTCAATTTC----TAGTT-TAATGTGAACTGATA--T--GGAAGTTTGTGAAACATTTTAAAAGAATATGGGCTTTTACTATGGTAGAAAAGTA-TTTTCCCTTGG--A----TAG-TTTCTTTTGAAT---AATCCATATGTTCGTAATCTACCCTTTT-CATT-TGCAACACATTCTGACCAGTTAT-----------T-AATAAA---TC-CTTCCCTAA--G----TT--AGAAAAC-----------------TCTGAAGCAA---AGATGTT-TTCACA-GGAT--ATTCCAATT--T-------------GATTCA--GC-CAAGAT---TAAAC-ACTGC--TCAACCAACAATTC-GTTTTGCTA-TTAT--T--CAATAT-CT--TATT----TTC--TTGAAGTG-------------------TC---------------GTTTGATTTATA-AATAT-GCT---GT-AACT--A--TTGGATA--GT-ATTGG-ATTTAAAGTTTCAA-ATATATAATGGATAACTACCT-ATTTCCC--CCATTAA-TGTATAGA--TTG-AGGCTTTCTTATGTACA
gi|20 : -T-TG-GACC-CATAAAGGGTATTCAGAAC-AAAT--AAC-AAGA-A--AAT--TG---A---AAT-AAAACAT-AACATA--AA-C----------AAAAAAAAATA-A--TA-----ATCAGGGGA--AGAG-AT-CCAAATGAT-tgagagtttaccacttagatgttttcaaggaattttcaatatcataaattggtctcttagcagcagcatattctgaaat
gi|21 : AAGAGAAT-A-TC--ATTTAT---TTCCAATA-C-TG-GACC-CAT------TATTCAGAAC-AAATAT-TT-ATGA-A--TAT--TG---A---AATAAAAACAT-AAAATA--GACC----------AAA-------A-A--TA-----AA
gi|22 : tagAGGGGA--AGAA-AT-CC--ATGATGAGCACT--TA-GTAAAA---AAAAAAAACG---ACAT---TACACCATGTAATG-AT-AA----------TAATAATT-GT
gi|23 : AGTTTACATTTTCGGTCTGCTA-CAGGAACATATTTGTA-TCTGCCAATTTtat
gi|3 : AATAGAAT-A-TC--ATTTAT---TTTCAATT-T-TG-GATC-CATTAAGGGTATTCAGAAC-AAATGTAAC-ATGA-A--TAC--TG---A---AAT-AAAACAT-AACATA--AA-CT---------AAA-------A-A--TA-----AACAGGGGA--AGAG-AT-CCAAATGAT-AGCATT--CAGGTGAAATTTAA-------GT--GCAT-G-TACATCATGT-ATT-AT-AT----------TAAT-ACA-ATATCAATTATTA------CATTG-AT-GAAG-TGCA-A----ATAA---TGTTTCAGTAGTAGA---TGCCA--------CATT-ATATTCA-AGTATATT----------------CT--G---CGACAACATT-GCATCTT-TTCTCATGACAATTATTTATGTA--GTCAGCAAGACAAGT-TA-TCATATTA-----------CTGTCTT--C---AT-TTGACATA--A-----------GC----CATATCAATCTATCTCTA--TCTAA---A-AGC-----AAG-------------GAA--AA----GTT--GA-AA--T-------T-TTCATCTATCACGTAATTTGCAA-ATC-CTTGTCTGT-ATTGTT--------CCT-----AAGTT-----GG----GCAT-TCAAACATAAAATGAA-TTTCATCTTCTACT-GCGTCTGGATTACAAAGTTTACATTTTCGATCTGCTT-CAGGGACATTTTTGTA-TCTGCCAATTTCAATTTC----TAGCT-T-ATGTGAACTG--A--TGCGGAAATTTGTGAAACATT---TAAGAATATGGGGTTTTACTATGACAAAAAGGTA-TTTTTCCTT-TGAA----AAG-CTTCTTTTGAAT---AATCCGTATGTTCGTAAt
gi|4 : tagTTAT---TTCCAATT-T-TG-GACC-CATTAAGAGTATTCAGAAT-AAATATAAC-GTGA-G--TGT--TT---A---CAT-AAA--GT-AACAT-------------------A-------A-A--TA-----ACCAGGGTATCAAAG-AT-CCAAATAAT-AGCACT--AAGGTGAAA-------------C--TCA--A-TACACAATGT-ATCAAT-AATCAAATTAATTAAT-ATA-ATGTCAATTATTG------CATGT-AT-AAATATACA-A----A--G---TGTTATGACAGTAGA---TGGCGTAAAATGCCATA-AAATTAT-GGTATGC--TACTTAGCT-TATGCCT--GACTNNNNNNNNNN-NNNNNNN-NNNNNNNNNNNNNNNNNNNNNNN--NNNNNNNATAC-AGTGTA--TATATT--------------GTCTG--CAAAAC-A---------A-----------GT----TATATCA--CTATTTTCA--TTTGACATA-AGCCATATAAATCTATCTTTATTTGAACGCA----GTG--AG-AA--TTTGGTCTT-TTCTTCTATCGTATGATTTACAA-ATT-GTTGTCTAT-ATTGTT--------CAT-----AAGTA-----GG----GCAT-TCAAAAAC-AAGTGAA-TTTCATCATCTACA-GAGTCTGAATTACAAAATTTACATTTGCGGTCTGCTA-CAAGGACA-TATTGTG-TCTGCCAATTTCAATTTTTTTATAGTT-T-ACGTGAGCTG--------------------AACAGT---GAAAAATATAG-----TA--ATGGTAGAAAAATA-TTTTCCCTTGG--A----GAG-CTTCTTTTGAAT---CGTCCATAAGTTCGTAACTTGCGCTTTT-AATT-tgtacatctccgatgtataaaaagt
gi|5 : TA--AA-C----------AAA-------A-A--TACAGATAACAGGGAA--AGAG-AT-CCAATTGAT-AGCACTTTCAGGTCAAA---AG-------G-------------A--ATGT-ATT-ATCAA----------TGATCATTAGTATCAATTATAATGGCGGCATTG-ATTAAAT-TGCC-------------CTTTA-AATAGTAGAGAATGGCA--------CATT-AGAT----GATCC-TTCTAGT--GGTATATGCCTTGG---CGATAACATTCGCATGTCGTTCTCATGACATT-A-ATATGTA--GTCAGCAAGACAAGT-TAGTTATATTAGCTACTGATTGTCGTTTT--CT--AT-T---------ATGACCATGAAGGC----CATATCAATCTATCTCTACTTTTGA---AGAGC-----AAGTTC----------GGA--AATATTGTTACGGTAA--TGTA----T-TTAATC-ATCATGTGATT-ACAA-ATC-CTTGTCTGT-ATTGT---------CATTGTGAAGGTT-----GG----GCAT-TCAA-CATAAAATGTACTTTCATCTTCCTCGCGAG----AGT--CAAGTTTTACATTT-CGGTCTGCTAACAGGGACATTGTTGTACTCTGCCAATTTAAGTTTC----TAGCT-T-ATGTGggtaata
gi|6 : atagtatatctttaatttttttccatatttttttggaacaaaattggtgaacacatcggacattgtgaatTTAAACAC-TTTTGATTGTAGA-TCTGAAGAAA---AGATGTT-ATCGCA-GGAT--ACGCT--TTAGTT------------GATTCA--GT-AAAAAAAAATAAAC-ACTGCATTCAAACATCAATTC-TTTTTGTTA-TCAT--T--CAAAAT-CA--TATT----TTC--TTGAAGTGCACTCTCA-AGC-AAAGTATA---------------ATTTGATTTATG-AATGT-GTT---GT-AAAC--A--TTTAACA--GT-ATTGG-G--TAAGGTTTCAATATATATAATGGATACCTACCTAA-TTCCC--CCA-TAACTGCAT--AGTTTGAA--TTTTCTTATGTAC
gi|7 : TTG-TTA-AGA-T-TGAAGAAACGCAGTTGTTCATCACAAGGATTGATGCG--TAAGTCGCATCGCTGCTAGTTTCATGGTGAAAAAA---TAAACCACTGC--TCAACCAACAATTCTTTTTTGTTATTCATACTAACAAAATGCAGGGATTCCTGTTCGATTG-AGTGCA--CGTG-AGCAAAAGTATCTGATCCCAACTTTTTGTTTGATTTATATGATGTGGTTTTGGTAAAATTAA-TTTTTATAACGTAATTGGAA--TAAGGTTTC-A-ATAccca
gi|8 : ttgaaAATAGAATTA-TAGAATTTAT---TTCCAATT-T-TG-GACC-CATAAAGGGTATTCAGAAC-------------------TAT--TG---A---AAT-AAAACAT-AACATA--AA-CAAAACAAAAAAAA-------A-A--TA-----ATCAGGGGA--AGAG-AT-CCAAATGAT-AGCACT--TAGGTAAAA---AA-------GTACACAT-G-TACAACATGT-ATT-AT-AA----------TAAT-ATT-GTATCAATTATTA------CATTG-AT-AAAT-TGC-----------------TACAATAGTAGA---TGGCA--------CATT-ATATTCA-GGTATATTATTTTCAGGTATAT-CCT--G---CGATAACATT-GCATCTT-agtatcatc
gi|9 : agATTCTGACAAATTATTTTACAATATATTAATAAA---TC-TTTTTTAAG--GT---TT--ATTTAACAC-TTTTGATTG-AAAATCTGAAGCAA---AGATGTC-ATCACA-GGGT--ATTCC--TAATT-------------GATTTA--GC-AAAACA---GAAAC-ACTGC--TCAACCAACAATTC-TTTTTGTTA-TTAT--T--CAATAT-CT--TATT----TTC--TTGAAGTGCACTCTCACAG--AAATTGTT---------------ATTTTATTTATG-AATAT-GTT---GT-AAAT--A--ATTAATA--GT-ATTGG-A--TAGAGTTTCG--ATATTTA
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|24 ): AGGAAAATAATGAAATCAAATCCTCAATGAAAATTCATGATTATACAG
Alignments
lowQualScore : 1111111 1111111111 1111111 33333333333333333333333 11111111111 1 111111 55555555555555555 11111111 1 111 999999999999999999999999999999999999999999999999999999999 111 11111 4444444444444 1111 2222222222 1 11111111 22222 11111 1111 1 1111 44444444444 11111 1 3333333333 111 1 1 1 111 1 2222222 11 111 11 11 5555555555555 11 111 11 11111 111 1111 11 111111 555555555555555 111 33333 11 1111 333 111 11 1 11
lowQualScore : 0000000 777 4 4 4 8 2 55 888 3 5555 55 666 666 3 3 44 3 9999999999 3333333 3 44 77777 0 1 44 3 3 3 55 77777777777777777777777 6 4 4 4 88888888888 2 77 222222 4 4 4 88888888888888888 0 777 44444444 4 5 0 0 55 3 1 1 1 77 000 5 5 0 1 4 0 99 6 5 5 0 999999999999999999999999999999999999999999999999999999999 99 111 6 44444 1111111111111 77 2222 77 5 6666666666 5 0 3 5 77 0 88888888 11111 22222 0000 5 1 5 1 66 0 1 1 1 0 0 5 4444 6 6 22 33333333333 1 5 55555 55 2 0 3333333333 8 444 0 0 0 3 4444 2 0 777 0 4444444 33 0 8 0 3 8 8 0 444 8 8 11 11 22 2222222222222 11 8 444 8 11 8 8 33333 1 8 222 7777 11 5 55 0 666666 000000000000000 8 8 444 8 00000 11 8 3333 000 7 777 88 2 6 11 6 7 7777
lowQualScore : ....... ... . . . . . .. ... . .... .. ... ... . . .. . .......... ....... . .. ..... . . .. . . . .. ....................... . . . . ........... . .. ...... . . . ................. . ... ........ . . . . .. . . . . .. ... . . . . . . .. . . . . ......................................................... .. ... . ..... ............. .. .... .. . .......... . . . . .. . ........ ..... ..... .... . . . . .. . . . . . . . .... . . .. ........... . . ..... .. . . .......... . ... . . . . .... . . ... . ....... .. . . . . . . . ... . . .. .. .. ............. .. . ... . .. . . ..... . . ... .... .. . .. . ...... ............... . . ... . ..... .. . .... ... . ... .. . . .. . . ....
lowQualScore : 8888888 888 0 0 0 0 5 77 444 6 4444 00 444 444 6 6 66 3 6666666666 1111111 1 22 77777 8 8 66 3 3 6 55 22222222222222222222222 6 0 0 0 66666666666 0 77 888888 4 4 4 99999999999999999 1 888 55555555 4 0 1 1 00 0 4 4 4 99 000 7 7 8 0 8 8 22 3 7 7 1 666666666666666666666666666666666666666666666666666666666 22 777 7 33333 4444444444444 99 1111 99 0 1111111111 0 1 9 7 44 0 11111111 22222 55555 6666 0 0 7 4 11 1 4 3 4 1 0 7 2222 7 7 22 00000000000 4 0 88888 00 5 0 2222222222 0 000 8 0 0 2 8888 5 0 555 0 5555555 88 8 0 6 2 0 0 6 000 0 0 00 00 22 0000000000000 00 0 000 0 00 0 0 00000 4 0 444 0000 00 6 66 6 444444 000000000000000 0 0 000 0 44444 00 0 0000 000 3 777 33 0 7 00 7 3 7777
consensus : AATAGAAT-A-TN--ATTTAT---TTCCAATT-T-TG-GACC-CATTAAGGGTATTCAGAAC-AAATGTAAC-ATGA-A--TAT--TG---A---AAT-AAAACAT-AACATA--AA-C----------AAA-------A-A--TA-----AACAGGGGA--AGAG-AT-CCAAATGAT-AGCACT--CAGGTAAAA---AA-------GT--ACAT-G-TACACCATGT-ATT-AT-AA----------TAAT-ATT-GTATCAATTATTA------CATTG-AT-AAAT-TGCA-A----A--A---TGTTACAATAGTAGA---TGGCA--------CATT-ATATTCA-GGTATATTATATTCAGGTATAT-CCT--G---CGATAACATT-GCATCTT-TTCTCATGACATTTATATATGTA--GTCAGCAAGACGAGT-TA-TTATATTA-----------CCGTCTT--C---AT-T---------A-----------GC----CATATCAATCTATCTCTA--TTTGA---A-AGC-----AAG-------------GAA--AA----GTT--GG-AA--T-------T-TTCATCTATCATGTGATTTACAA-ATC-CTTGTCTGT-ATTGTT--------CAT-----AAGTT-----GG----GCAT-TCAAACATAAAATGNA-TTTCGTCTTCTACG-GAGTCTGAATTACAAAGTTTACATTTTCGGTCTGCTA-CAGGGACATTTTTGTA-TCTGCCAATTTCAATTTC----TAGCT-T-ATGTGAGCTG--A--T--GGAAGTTTGTGAAACATT---NAAGAATATGGGGTTTTACTATGGCAGAAAGGTA-TTTTCCCTTGGGAA----GAG-CTTCTTTTGAAT---AATCCATATGTTCGTAACTTGCCCTTTT-CATT-TTTAGCACATTCTGACAAATTACTTCGCCATATAT-AATAAA---TC-TTTTTCTAA--GT---TT--ATTAAACAC-TTTTGATTG-AGA-TCTGAAGAAA---AGATGTT-ATCGCA-GGAT--ATGCC--TTAGT-------------GATTCA--GT-AAAAAA---TAAAC-ACTGC--TCAACCAACAATTC-TTTTTGTTA-TCAT--T--CAAAAT-CA--TATT----TTC--TTGAAGTGCACTCTCG-AGC-AAAGTATC---------------GTTTGATTTATG-AATGT-GTT---GT-AAAT--A-TTTTAATA--GT-ATTGG-A--TAAGGTTTCGA-ATATATAATGGATAACTACCT-A-TTCCC--CCACTAACTGCATAGAGTTTGAAGGCTTTCTTATGTACA
Reference ( family-754 ) : AATAGAAT-A-TN--ATTTAT---TTCCAATT-T-TG-GACC-CATTAAGGGTATTCAGAAC-AAATGTAAC-ATGA-A--TAT--TG---A---AAT-AAAACAT-AACATA--AA-C----------AAA-------A-A--TA-----AACAGGGGA--AGAG-AT-CCAAATGAT-AGCACT--CAGGTAAAA---AA-------GT--ACAT-G-TACACCATGT-ATT-AT-AA----------TAAT-ATT-GTATCAATTATTA------CATTG-AT-AAAT-TGCA-A----A--A---TGTTACAATAGTAGA---TGGCA--------CATT-ATATTCA-GGTATATTATATTCAGGTATAT-CCT--G---CGATAACATT-GCATCTT-TTCTCATGACATTTATATATGTA--GTCAGCAAGACGAGT-TA-TTATATTA-----------CCGTCTT--C---AT-T---------A-----------GC----CATATCAATCTATCTCTA--TTTGA---A-AGC-----AAG-------------GAA--AA----GTT--GG-AA--T-------T-TTCATCTATCATGTGATTTACAA-ATC-CTTGTCTGT-ATTGTT--------CAT-----AAGTT-----GG----GCAT-TCAAACATAAAATGNA-TTTCGTCTTCTACG-GAGTCTGAATTACAAAGTTTACATTTTCGGTCTGCTA-CAGGGACATTTTTGTA-TCTGCCAATTTCAATTTC----TAGCT-T-ATGTGAGCTG--A--T--GGAAGTTTGTGAAACATT---NAAGAATATGGGGTTTTACTATGGCAGAAAGGTA-TTTTCCCTTGGGAA----GAG-CTTCTTTTGAAT---AATCCATATGTTCGTAACTTGCCCTTTT-CATT-TTTAGCACATTCTGACAAATTACTTCGCCATATAT-AATAAA---TC-TTTTTCTAA--GT---TT--ATTAAACAC-TTTTGATTG-AGA-TCTGAAGAAA---AGATGTT-ATCGCA-GGAT--ATGCC--TTAGT-------------GATTCA--GT-AAAAAA---TAAAC-ACTGC--TCAACCAACAATTC-TTTTTGTTA-TCAT--T--CAAAAT-CA--TATT----TTC--TTGAAGTGCACTCTCG-AGC-AAAGTATC---------------GTTTGATTTATG-AATGT-GTT---GT-AAAT--A-TTTTAATA--GT-ATTGG-A--TAAGGTTTCGA-ATATATAATGGATAACTACCT-A-TTCCC--CCACTAACTGCATAGAGTTTGAAGGCTTTCTTATGTACA
gi|1 : AATAGAAC-A-TA--ATTTAT---TTCCAATT-T-TG-GACC-CATTAAGGGTATTCAGAAC-AAATGTAAC-ATGA-A--TAT--TG---A---AAT-AAAACAT-AACATA--AA-C----------AAA-------A-A--TA-----AACAGGGGA--AGAG-AT-CCAAATGAT-AGCACT--CAGGTAAAA---TA-------GT--ACAT-G-TGCACCATGT-ATT-AT-AA----------TAAT-ATT-GTATCAACCATTA------TATTG-AT-AAAG-TGCA-A----A--AAAATGTTACAATAGTAGA---TGACA--------CATT-ATATTCA-GGTATATTATATTCAGGTATAT-CCT--G---CGATAACATT-ACATCTT-TTCTCATGACATTTATATATATATAGTCAGCAAGACAAGT-TA-TTATATTA-----------CTGTCTT--C---AT-T-------------------------------TCAATCTATCTCTA--GTTGA---A-TGC-----AAG-------------GAA--AA----GTT--GG-AA--T-------T-TTCATCTATCATGTGATTTACAA-ATC-CTTGTCTAT-ATTGTT--------CAT-----AAGTT-----GG----GCAT-TCAAACATAAAATGTA-TTTCATCTTCTATG-GAGTCTGAATTACAAAGTTTACATTTTCGGTCTGCTA-TTGGGACATTTTTGTA-TCTGCCAATTTCAATTTC----TAGCT-T-ATGTG----------------AGTTTGTGAAACATT---GAAGAATATGGGGTTTTACTAAAACAGAAAGGTATTTTTCCCTTGAGAAGCTTGAGCCTTCTTTTGAAT---AATGCCTATGTTCGTAACTTGCCCTTTT-CATT-TTTAGCAC--TCTGACAAATTACTTTGCCATATAT-AATAAA---TC-TTTTTCTAA--GTTCATT--ATTAAACAC-TTTTGATTG-AGA-TCTGAAGAAA---AGATGTT-GTCGCA-GGAT--ATGCC--CTAGT-------------GATTCA--GT-AAAAAA---TAAAC-ACTG---TCAACCAACAATTC-TTTTTGTTA-TCAT--T--CAAAAT-CA--TATT----TTC--TT--AGTGCACTCTCA-AGC-AAAGTATC---------------ATTTGATTTATG-AATGT-GTT---GT-AAAT--ATTTTTAATA--GT-ATTGG-A--TAAGGTTTC---ATATATAATGGAT-ATTACCT-A-CCCCCCACCCCTAACTGCATAAAGTTTGAAGGC--TCTTATGTACA
gi|10 : AATAGAAT-A-TT--ATTTAT---TTCCAATT-T-TG-GACC-CATTAAGAGTATTCAGAAC-AAATGTAAC-ATGA-A--TAT--TG---A---AAT-AAAACAT-AAAATA--AA-CA---------AAA-------A-A--TA-----GAGAGAGGG--AAAA-TT-CCAAATGAT-AGCACT--CAGGTGAAATTTAA-------GA--ACAT-G-TACACCATGT-ACC-AT-AT----------TAAT-AAA-ATATCAATTATCA------CATTG-AT-AAAG-TGCA-AAAACA--A---TGTTGCAATAGTAGA---TGGCA--------CAc
gi|11 : ataaaA--------CATTTATATTTA-G-T-CACCATATTCAGGTAT-T-CTT--G---CAATAACATT-TCATCTT-TTC-----------ATATATGTA--GTCAGCAAGACGAGT-TA-TTATAT------------------TTGAC---ATAC---------A-----------GCCATGCATATCAATCTATCTCTA--TTTGA---A-AGC-----AAG-------------GAA--AA----GTC--TG-CA--T-------TGTTCAT
gi|11 : GTCTGC-ATTGTT--------CAT-----AAGTT-----GG----GCAT-TCAAACATAAAATGAA-TTTCGTCTTCTACA-AAGTCTGA--------------ATTTTCGGTCTGCAA-CAGAGACaagttgggcattcaaacataaaatgaatttcgtcttctacaaagtctgaattttcggtctgcaacagagact
gi|12 : acatttatatttagtcaccatattcaggtattcttgcaataacatttcatcttttcatatatgtagtcagcaagacgagttattatatttgacatacagccatgcatatcaatctatctctatttgaaagcaaggaaaa----------AAA-------A-A--TA-----ATCAGGG-A--AGTG-AT-CCAAATGAT-AGCACT--TAGGTAAAA---AA-------GT--ACATTG-TACAACATGT-ATT-AT-AA----------TAAT-AT--GTATCAATTATTA------CATTG-AT-AAAT-TGC-----------------TAAAATAGTAGA---TGGCA--------CATT-ATATTCA-GGTATATTATATTCAGGTATAT-CCT--G---CGATAACATT-GCATCTT-TTCTCATGACATTTATATATATA--GTCAGCAAGACAAGT-TA-TTATATTA-----------Ct
gi|13 : AATAGAAT----------TAT---TTCCAATT-T-TT-GGCCACA-TAAAGGTATTCAGAAC-AAAT-T-AC-ATGA-AATCAT--TG---A---AAT-AAAACAT-A----A--AA-C----------AAA-------A-A--TA-----AACAGGGGA--AGAGAATGCCAAATGAT-AGCATT--CAGGTAAAACG-AA-------GT--ACAT-GTTACA-CATGT-ATT-AT-A------------AATAATT-GTATCAA-TA-TA------CATTGAAT-AAAT-TGCACA----A--A------TAC--------------CCA--------CATT-ATACTCAGGGTAT
gi|14 : aaagga-AA--T-------T-TTGATTTTGAATGCAATCCACAA-AT---TTGT-TGTTGTTGTT--------TAT-----AAATA-----GACAGAACAT-TCAAGGATAAATTTAC-TCTAGTTTTGTATG-AAATCTAAATTACACACCCAACATTTTTGGTCTGATAACAGGAATATTTTT-TA-TCTGTCTATTTCAATTTC----CAAATGT-ATGAAAGCTA--ATTT--GAAAATTT-TTAAACATT---T-AGAA
gi|15 : ATAAAGGGTATTCAGAAC-------------------TAT--TA---A---AAT-AAAACAT-AACATA--AA-C----------AAA-------A-AAATA-----ATCAGGG-A--AGAG-AT-CCAAATGAT-AGCACT--TGGGTAAAA---AA-------------------AAACCATGT-ATT-AT-AA----------TAAT-ATT-GTATCAATTATTA------CATTG-AT-AAAT-TGC-----------------TACAATAGTAGA---TGGCA--------CATT-ATATTC
gi|16 : gAG-CTTCTTTTTGATTTTAATCCATATGT-CGTAACTTGCCCTTTTTCATTGTTTAGCACATTCTGACAAATTACTTCGCCATATAT-TATTAAGAGTCTTTTTTCTAAAGGT---TTCAATTAAACACATGTTGAT
gi|17 : aAATAGAAT-AATA--ATGTAT---TTC-AATT-TATG-GACT-CATTAAGGGTA-TCAGAAC-CAATGTAACAACGT-A--TAT--TGCCAA---GAT--AAACAT-AACAT---AA-C----------AAA-------A-A---A-----TACAGGGGA--AGAG-AT-CCAAag
gi|18 : aaag-A-TG--ATTTATCCTTTCCAATTAC-TGTGATCTCCTTAAGGGTATTCAGAACAAAATGTAAC-ATAAGA--CATGATG---ATATAAT-AACGCATGAAAGTACTAA-C----------AAAT------ATA--TA-----AACAG
gi|19 : aacaC-----AAG-------------AGA--AA----ATT--GG-AAATT-------T-TTCATCCATCATGTGATTTAAAATATTACTTGTCTGTAATTGCTGTGATATACATTTA--GAGTTCGCGAAG----GCATATCAAACACAA
gi|2 : AAAACGAGT-TA-T---ATCA-----------TCATCTT--C---AT-TTGACATTTAA-----------GC----CATATCAATCCATCTCTA--TTTGA---A-AGC-----AAG-------------GAT--TA----GTG--GG-AA--A-------T-TTCATCTATCAGGTGGCCAACAA-ATC-CTTGTCTGT-ATTGTT--------CAT-----AAGCT-----GG----ACAT-TCAAACATAAAATGTA-TTTCATCTTCTACA-GAGTCTGAATTACACAGTTTACATTTTCGGTCTGCTT-CAGGGACATTTCTGTA-CCTGCCAATTTCAATTTC----TAGTT-TAATGTGAACTGATA--T--GGAAGTTTGTGAAACATTTTAAAAGAATATGGGCTTTTACTATGGTAGAAAAGTA-TTTTCCCTTGG--A----TAG-TTTCTTTTGAAT---AATCCATATGTTCGTAATCTACCCTTTT-CATT-TGCAACACATTCTGACCAGTTAT-----------T-AATAAA---TC-CTTCCCTAA--G----TT--AGAAAAC-----------------TCTGAAGCAA---AGATGTT-TTCACA-GGAT--ATTCCAATT--T-------------GATTCA--GC-CAAGAT---TAAAC-ACTGC--TCAACCAACAATTC-GTTTTGCTA-TTAT--T--CAATAT-CT--TATT----TTC--TTGAAGTG-------------------TC---------------GTTTGATTTATA-AATAT-GCT---GT-AACT--A--TTGGATA--GT-ATTGG-ATTTAAAGTTTCAA-ATATATAATGGATAACTACCT-ATTTCCC--CCATTAA-TGTATAGA--TTG-AGGCTTTCTTATGTACA
gi|20 : -T-TG-GACC-CATAAAGGGTATTCAGAAC-AAAT--AAC-AAGA-A--AAT--TG---A---AAT-AAAACAT-AACATA--AA-C----------AAAAAAAAATA-A--TA-----ATCAGGGGA--AGAG-AT-CCAAATGAT-tgagagtttaccacttagatgttttcaaggaattttcaatatcataaattggtctcttagcagcagcatattctgaaat
gi|21 : AAGAGAAT-A-TC--ATTTAT---TTCCAATA-C-TG-GACC-CAT------TATTCAGAAC-AAATAT-TT-ATGA-A--TAT--TG---A---AATAAAAACAT-AAAATA--GACC----------AAA-------A-A--TA-----AA
gi|22 : tagAGGGGA--AGAA-AT-CC--ATGATGAGCACT--TA-GTAAAA---AAAAAAAACG---ACAT---TACACCATGTAATG-AT-AA----------TAATAATT-GT
gi|23 : AGTTTACATTTTCGGTCTGCTA-CAGGAACATATTTGTA-TCTGCCAATTTtat
gi|3 : AATAGAAT-A-TC--ATTTAT---TTTCAATT-T-TG-GATC-CATTAAGGGTATTCAGAAC-AAATGTAAC-ATGA-A--TAC--TG---A---AAT-AAAACAT-AACATA--AA-CT---------AAA-------A-A--TA-----AACAGGGGA--AGAG-AT-CCAAATGAT-AGCATT--CAGGTGAAATTTAA-------GT--GCAT-G-TACATCATGT-ATT-AT-AT----------TAAT-ACA-ATATCAATTATTA------CATTG-AT-GAAG-TGCA-A----ATAA---TGTTTCAGTAGTAGA---TGCCA--------CATT-ATATTCA-AGTATATT----------------CT--G---CGACAACATT-GCATCTT-TTCTCATGACAATTATTTATGTA--GTCAGCAAGACAAGT-TA-TCATATTA-----------CTGTCTT--C---AT-TTGACATA--A-----------GC----CATATCAATCTATCTCTA--TCTAA---A-AGC-----AAG-------------GAA--AA----GTT--GA-AA--T-------T-TTCATCTATCACGTAATTTGCAA-ATC-CTTGTCTGT-ATTGTT--------CCT-----AAGTT-----GG----GCAT-TCAAACATAAAATGAA-TTTCATCTTCTACT-GCGTCTGGATTACAAAGTTTACATTTTCGATCTGCTT-CAGGGACATTTTTGTA-TCTGCCAATTTCAATTTC----TAGCT-T-ATGTGAACTG--A--TGCGGAAATTTGTGAAACATT---TAAGAATATGGGGTTTTACTATGACAAAAAGGTA-TTTTTCCTT-TGAA----AAG-CTTCTTTTGAAT---AATCCGTATGTTCGTAAt
gi|4 : tagTTAT---TTCCAATT-T-TG-GACC-CATTAAGAGTATTCAGAAT-AAATATAAC-GTGA-G--TGT--TT---A---CAT-AAA--GT-AACAT-------------------A-------A-A--TA-----ACCAGGGTATCAAAG-AT-CCAAATAAT-AGCACT--AAGGTGAAA-------------C--TCA--A-TACACAATGT-ATCAAT-AATCAAATTAATTAAT-ATA-ATGTCAATTATTG------CATGT-AT-AAATATACA-A----A--G---TGTTATGACAGTAGA---TGGCGTAAAATGCCATA-AAATTAT-GGTATGC--TACTTAGCT-TATGCCT--GACTNNNNNNNNNN-NNNNNNN-NNNNNNNNNNNNNNNNNNNNNNN--NNNNNNNATAC-AGTGTA--TATATT--------------GTCTG--CAAAAC-A---------A-----------GT----TATATCA--CTATTTTCA--TTTGACATA-AGCCATATAAATCTATCTTTATTTGAACGCA----GTG--AG-AA--TTTGGTCTT-TTCTTCTATCGTATGATTTACAA-ATT-GTTGTCTAT-ATTGTT--------CAT-----AAGTA-----GG----GCAT-TCAAAAAC-AAGTGAA-TTTCATCATCTACA-GAGTCTGAATTACAAAATTTACATTTGCGGTCTGCTA-CAAGGACA-TATTGTG-TCTGCCAATTTCAATTTTTTTATAGTT-T-ACGTGAGCTG--------------------AACAGT---GAAAAATATAG-----TA--ATGGTAGAAAAATA-TTTTCCCTTGG--A----GAG-CTTCTTTTGAAT---CGTCCATAAGTTCGTAACTTGCGCTTTT-AATT-tgtacatctccgatgtataaaaagt
gi|5 : TA--AA-C----------AAA-------A-A--TACAGATAACAGGGAA--AGAG-AT-CCAATTGAT-AGCACTTTCAGGTCAAA---AG-------G-------------A--ATGT-ATT-ATCAA----------TGATCATTAGTATCAATTATAATGGCGGCATTG-ATTAAAT-TGCC-------------CTTTA-AATAGTAGAGAATGGCA--------CATT-AGAT----GATCC-TTCTAGT--GGTATATGCCTTGG---CGATAACATTCGCATGTCGTTCTCATGACATT-A-ATATGTA--GTCAGCAAGACAAGT-TAGTTATATTAGCTACTGATTGTCGTTTT--CT--AT-T---------ATGACCATGAAGGC----CATATCAATCTATCTCTACTTTTGA---AGAGC-----AAGTTC----------GGA--AATATTGTTACGGTAA--TGTA----T-TTAATC-ATCATGTGATT-ACAA-ATC-CTTGTCTGT-ATTGT---------CATTGTGAAGGTT-----GG----GCAT-TCAA-CATAAAATGTACTTTCATCTTCCTCGCGAG----AGT--CAAGTTTTACATTT-CGGTCTGCTAACAGGGACATTGTTGTACTCTGCCAATTTAAGTTTC----TAGCT-T-ATGTGggtaata
gi|6 : atagtatatctttaatttttttccatatttttttggaacaaaattggtgaacacatcggacattgtgaatTTAAACAC-TTTTGATTGTAGA-TCTGAAGAAA---AGATGTT-ATCGCA-GGAT--ACGCT--TTAGTT------------GATTCA--GT-AAAAAAAAATAAAC-ACTGCATTCAAACATCAATTC-TTTTTGTTA-TCAT--T--CAAAAT-CA--TATT----TTC--TTGAAGTGCACTCTCA-AGC-AAAGTATA---------------ATTTGATTTATG-AATGT-GTT---GT-AAAC--A--TTTAACA--GT-ATTGG-G--TAAGGTTTCAATATATATAATGGATACCTACCTAA-TTCCC--CCA-TAACTGCAT--AGTTTGAA--TTTTCTTATGTAC
gi|7 : TTG-TTA-AGA-T-TGAAGAAACGCAGTTGTTCATCACAAGGATTGATGCG--TAAGTCGCATCGCTGCTAGTTTCATGGTGAAAAAA---TAAACCACTGC--TCAACCAACAATTCTTTTTTGTTATTCATACTAACAAAATGCAGGGATTCCTGTTCGATTG-AGTGCA--CGTG-AGCAAAAGTATCTGATCCCAACTTTTTGTTTGATTTATATGATGTGGTTTTGGTAAAATTAA-TTTTTATAACGTAATTGGAA--TAAGGTTTC-A-ATAccca
gi|8 : ttgaaAATAGAATTA-TAGAATTTAT---TTCCAATT-T-TG-GACC-CATAAAGGGTATTCAGAAC-------------------TAT--TG---A---AAT-AAAACAT-AACATA--AA-CAAAACAAAAAAAA-------A-A--TA-----ATCAGGGGA--AGAG-AT-CCAAATGAT-AGCACT--TAGGTAAAA---AA-------GTACACAT-G-TACAACATGT-ATT-AT-AA----------TAAT-ATT-GTATCAATTATTA------CATTG-AT-AAAT-TGC-----------------TACAATAGTAGA---TGGCA--------CATT-ATATTCA-GGTATATTATTTTCAGGTATAT-CCT--G---CGATAACATT-GCATCTT-agtatcatc
gi|9 : agATTCTGACAAATTATTTTACAATATATTAATAAA---TC-TTTTTTAAG--GT---TT--ATTTAACAC-TTTTGATTG-AAAATCTGAAGCAA---AGATGTC-ATCACA-GGGT--ATTCC--TAATT-------------GATTTA--GC-AAAACA---GAAAC-ACTGC--TCAACCAACAATTC-TTTTTGTTA-TTAT--T--CAATAT-CT--TATT----TTC--TTGAAGTGCACTCTCACAG--AAATTGTT---------------ATTTTATTTATG-AATAT-GTT---GT-AAAT--A--ATTAATA--GT-ATTGG-A--TAGAGTTTCG--ATATTTA
blockSeqs : TATAGA CCT A A T A T AA GTA A AAT GA CCA TAT A G CT C AAAACAAAAA AAAAAAT T AA CAGAT G TC A G G TT AAAAAAAACGACAT C A A C ATCAAATTAAT A TA TGGCGG A T A AAAAACAATGT GAA TAAAATGC T G CA C A A G TG ACT C G T T . G G G TAGCTACTGATTGTCGTTTTCTATTATGACCATGAAGGC CT CAT G CATAT TCTATCTTTATTT CG TATT AC T TTTGGTCT G C T TA T GTGATATA TGTGA CGCGA CAGA A A C G GC T C C A C TTTA G A AG ATTTGAA A G TTAAA GC C . TGAAA . TTT T G A TTCG C T GAG T AGGT CA A A T A CGC C A TG AA TA CGCATCGCTGCTA TG G AAA C AT T T ACTAA T G AGG CCTG GA A CT GAGCA TGATCCCAACTTTTT T G TTG A TAAT AC A ATT AAT A AT . T C AG G A GGCT
blockSeqs : AATA . . . . T T A GTA . GA . . . . . . . A T . . . G . . . . . TTTAAGAACATG A . . . T A A . . . . AAATAATGT . . . . TA C A A G . . . . A T . A . . CATCATCTTCATTTGACATTTAAGC . . . . TTC . . . . TGTA . T . C A . TTA . . . A . G A T C G A . . . . AA ATATGGA G G TA GG C . GGAT . . . . A TTTA A . . . GT . . A . . . . . . . AA T . . . . . . . T A . T . . A CT AAGC . . . . . A . . AA AA A AA . . . . . . TT
blockSeqs : ATT . . . . . A A GTA . A . . . . . . . T . . . . G . . . . . CGAAGTACATGT C . . . A C T . . . . AAAGTGT . . . . TC T A A . . . . . N N . G . . TACTGTCTTCATTTGACATAAGC . . . . . . . . . ATT . A . C . . . . . . T . A G T A G . . . . . AA ATGCGGA A . GA . . . GGAG . . . . A . . . . . G . . A . . . . . . . AA . . . . . . . . T A . A . . A . ACAG . . . . . A . . G A
blockSeqs : ATG . . . . . T C GTA . A . . . . . . . . . . . . G . . . . . TTTAAGTGCATG C . . . A . T . . . . ACAAA . . . . TA C A A . . . . . T . . A . . TTGACATACAGCCATG . . . . . . . . . T . T . T . . . . . . A . A A T A G . . . . . AG . . . T . . . . . . . . . . . T . . . . . . . . T T . T . . . . . . . . . . A . . A G
blockSeqs : ATC . . . . . T A ATA . A . . . . . . . . . . . . G . . . . . AAGTACACATG T . . . A . T . . . . CCTT . . . . T . . . . . . . . . . . A . . TGTCTGCAAAACAAGT . . . . . . . . . T . T . C . . . . . . A . A T . A A . . . . . .
blockSeqs : ATC . . . . . A A AT . A . . . . . . . . . . . . G . . . . . AAGTACATTG C . . . T . A . . . . . . . . . . . . . . . . . . . . . . . . . . . A . . . . . . . . . . T . A A . . T . .
blockSeqs : . . . . . . T A T . A . . . . . . . . . . . . T . . . . . CTCAA A . . . A . A . . . . . . . . . . T . . . . . . . . .
blockSeqs : . . . . . T A A . G . . . . . . . . . . . . A . . . . . AGG . . . . A . T . . . . . . . .
blockSeqs : . . . . A . . . . . . . . . . . . . . . . G . . . . . AA . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . .
blockSeqs : . . . . .
blockSeqCons : AAGTACATG************** AAAAT************ ** AG ATNCGGA**** ** A**** A**
originalCons : AATAGAAT-A-TN--ATTTAT---TTCCAATT-T-TG-GACC-CATTAAGGGTATTCAGAAC-AAATGTAAC-ATGA-A--TAT--TG---A---AAT-AAAACAT-AACATA--AA-C----------AAA-------A-A--TA-----AACAGGGGA--AGAG-AT-CCAAATGAT-AGCACT--CAGGTAAAA---AA-------GT--ACAT-G-TACACCATGT-ATT-AT-AA----------TAAT-ATT-GTATCAATTATTA------CATTG-AT-AAAT-TGCA-A----A--A---TGTTACAATAGTAGA---TGGCA--------CATT-ATATTCA-GGTATATTATATTCAGGTATAT-CCT--G---CGATAACATT-GCATCTT-TTCTCATGACATTTATATATGTA--GTCAGCAAGACGAGT-TA-TTATATTA-----------CCGTCTT--C---AT-T---------A-----------GC----CATATCAATCTATCTCTA--TTTGA---A-AGC-----AAG-------------GAA--AA----GTT--GG-AA--T-------T-TTCATCTATCATGTGATTTACAA-ATC-CTTGTCTGT-ATTGTT--------CAT-----AAGTT-----GG----GCAT-TCAAACATAAAATGNA-TTTCGTCTTCTACG-GAGTCTGAATTACAAAGTTTACATTTTCGGTCTGCTA-CAGGGACATTTTTGTA-TCTGCCAATTTCAATTTC----TAGCT-T-ATGTGAGCTG--A--T--GGAAGTTTGTGAAACATT---NAAGAATATGGGGTTTTACTATGGCAGAAAGGTA-TTTTCCCTTGGGAA----GAG-CTTCTTTTGAAT---AATCCATATGTTCGTAACTTGCCCTTTT-CATT-TTTAGCACATTCTGACAAATTACTTCGCCATATAT-AATAAA---TC-TTTTTCTAA--GT---TT--ATTAAACAC-TTTTGATTG-AGA-TCTGAAGAAA---AGATGTT-ATCGCA-GGAT--ATGCC--TTAGT-------------GATTCA--GT-AAAAAA---TAAAC-ACTGC--TCAACCAACAATTC-TTTTTGTTA-TCAT--T--CAAAAT-CA--TATT----TTC--TTGAAGTGCACTCTCG-AGC-AAAGTATC---------------GTTTGATTTATG-AATGT-GTT---GT-AAAT--A-TTTTAATA--GT-ATTGG-A--TAAGGTTTCGA-ATATATAATGGATAACTACCT-A-TTCCC--CCACTAACTGCATAGAGTTTGAAGGCTTTCTTATGTACA
finalCons : AATAGAAT-A-TN--ATTTAT---TTCCAATT-T-TG-GACC-CATTAAGGGTATTCAGAAC-AAATGTAAC-ATGA-A--TAT--TG---A---AAT-AAAACAT-AACATA--AA-C----------AAA-------A-A--TA-----AACAGGGGA--AGAG-AT-CCAAATGAT-AGCACT--CAGGTAAAAAAGTACATG--------------TACACCATGT-ATT-AT-AA----------TAAT-ATT-GTATCAATTATTA------CATTG-AT-AAAT-TGCAAAAT------------TACAATAGTAGA---TGGCA--------CATT-ATATTCA-GGTATATTATATTCAGGTATAT-CCT--G---CGATAACATT-GCATCTT-TTCTCATGACATTTATATATGTA--GTCAGCAAGACGAGT-TA-TTATATTA-----------CCGTCTT--C---AT-T---------A-----------GC----CATATCAATCTATCTCTA--TTTGA---A-AGC-----AAG-------------GAA--AA----GTT--GG-AA--T-------T-TTCATCTATCATGTGATTTACAA-ATC-CTTGTCTGT-ATTGTT--------CAT-----AAGTT-----GG----GCAT-TCAAACATAAAATGNA-TTTCGTCTTCTACG-GAGTCTGAATTACAAAGTTTACATTTTCGGTCTGCTA-CAGGGACATTTTTGTA-TCTGCCAATTTCAATTTC----TAGCT-T-ATGTGAGCTGATNCGGA----AGTTTGTGAAACATT---NAAGAATATGGGGTTTTACTATGGCAGAAAGGTA-TTTTCCCTTGGGAA----GAG-CTTCTTTTGAAT---AATCCATATGTTCGTAACTTGCCCTTTT-CATT-TTTAGCACATTCTGACAAATTACTTCGCCATATAT-AATAAA---TC-TTTTTCTAA--GT---TT--ATTAAACAC-TTTTGATTG-AGA-TCTGAAGAAA---AGATGTT-ATCGCA-GGAT--ATGCC--TTAGT-------------GATTCA--GT-AAAAAA---TAAAC-ACTGC--TCAACCAACAATTC-TTTTTGTTA-TCAT--T--CAAAAT-CA--TATT----TTC--TTGAAGTGCA--CTCG-AGC-AAAGTATC---------------GTTTGATTTATG-AATGT-GTT---GT-AAATA----TTTAATA--GT-ATTGG-A--TAAGGTTTCA--ATATATAATGGATAACTACCT-A-TTCCC--CCACTAACTGCATAGAGTTTGAAGGCTTTCTTATGTACA
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|24 ): AGGAAAATAATGAAATCAAATCCTCAATGAAAATTCATGATTATACAG
Alignments
lowQualScore : 1111111 1111111111 1111111 33333333333333333333333 11111111111 1 111111 666666666666666 11111111 1 111 999999999999999999999999999999999999999999999999999999999 111 11111 4444444444444 1111 2222222222 1 11111111 22222 11111 1111 1 1111 2222222 11111 1 3333333333 111 1 1 1 111 1 2222222 11 111 11 11 5555555555555 11 111 11 11111 111 1111 11 555555555555555555555555555555555555 111 11 22 11 1111 2222 111 11 1 11
lowQualScore : 0000000 777 4 4 4 8 2 55 888 3 5555 55 666 666 3 3 44 3 9999999999 3333333 3 44 77777 0 1 44 3 3 3 55 77777777777777777777777 6 4 4 4 88888888888 2 77 222222 4 4 4 555555555555555 0 777 44444444 4 5 0 0 55 3 1 1 1 77 000 5 5 0 1 4 0 99 6 5 5 0 999999999999999999999999999999999999999999999999999999999 99 111 6 44444 1111111111111 77 2222 77 5 6666666666 5 0 3 5 77 0 88888888 11111 22222 0000 5 1 5 1 66 0 1 1 1 0 0 5 4444 6 6 22 3333333 1 5 55555 55 2 0 3333333333 8 444 0 0 0 3 4444 2 0 777 0 4444444 33 0 8 0 3 8 8 0 444 8 8 11 11 22 2222222222222 11 8 444 8 11 8 8 33333 1 8 222 7777 11 5 666666666666666666666666666666666666 8 8 444 11 22 11 8 3333 2222 7 777 88 2 6 11 6 7 7777
lowQualScore : ....... ... . . . . . .. ... . .... .. ... ... . . .. . .......... ....... . .. ..... . . .. . . . .. ....................... . . . . ........... . .. ...... . . . ............... . ... ........ . . . . .. . . . . .. ... . . . . . . .. . . . . ......................................................... .. ... . ..... ............. .. .... .. . .......... . . . . .. . ........ ..... ..... .... . . . . .. . . . . . . . .... . . .. ....... . . ..... .. . . .......... . ... . . . . .... . . ... . ....... .. . . . . . . . ... . . .. .. .. ............. .. . ... . .. . . ..... . . ... .... .. . .................................... . . ... .. .. .. . .... .... . ... .. . . .. . . ....
lowQualScore : 8888888 888 0 0 0 0 5 77 444 6 4444 00 444 444 6 6 66 3 6666666666 1111111 1 22 77777 8 8 66 3 3 6 55 22222222222222222222222 6 0 0 0 66666666666 0 77 888888 4 4 4 333333333333333 1 888 55555555 4 0 1 1 00 0 4 4 4 99 000 7 7 8 0 8 8 22 3 7 7 1 666666666666666666666666666666666666666666666666666666666 22 777 7 33333 4444444444444 99 1111 99 0 1111111111 0 1 9 7 44 0 11111111 22222 55555 6666 0 0 7 4 11 1 4 3 4 1 0 7 2222 7 7 22 0000000 4 0 88888 00 5 0 2222222222 0 000 8 0 0 2 8888 5 0 555 0 5555555 88 8 0 6 2 0 0 6 000 0 0 00 00 22 0000000000000 00 0 000 0 00 0 0 00000 4 0 444 0000 00 6 222222222222222222222222222222222222 0 0 000 00 00 00 0 0000 8888 3 777 33 0 7 00 7 3 7777
consensus : AATAGAAT-A-TN--ATTTAT---TTCCAATT-T-TG-GACC-CATTAAGGGTATTCAGAAC-AAATGTAAC-ATGA-A--TAT--TG---A---AAT-AAAACAT-AACATA--AA-C----------AAA-------A-A--TA-----AACAGGGGA--AGAG-AT-CCAAATGAT-AGCACT--CAGGTAAAA---AA-------GT--ACAT-G-TACACCATGT-ATT-AT-AA----------TAAT-ATT-GTATCAATTATTA------CATTG-AT-AAAT-TGCAAA----A------TTACAATAGTAGA---TGGCA--------CATT-ATATTCA-GGTATATTATATTCAGGTATAT-CCT--G---CGATAACATT-GCATCTT-TTCTCATGACATTTATATATGTA--GTCAGCAAGACGAGT-TA-TTATATTA-----------CCGTCTT--C---AT-T---------A-----------GC----CATATCAATCTATCTCTA--TTTGA---A-AGC-----AAG-------------GAA--AA----GTT--GG-AA--T-------T-TTCATCTATCATGTGATTTACAA-ATC-CTTGTCTGT-ATTGTT--------CAT-----AAGTT-----GG----GCAT-TCAAACATAAAATGNA-TTTCGTCTTCTACG-GAGTCTGAATTACAAAGTTTACATTTTCGGTCTGCTA-CAGGGACATTTTTGTA-TCTGCCAATTTCAATTTC----TAGCT-T-ATGTGAGCTGAT-CGGAAGTTTGTGAAACATT---NAAGAATATGGGGTTTTACTATGGCAGAAAGGTA-TTTTCCCTTGGGAA----GAG-CTTCTTTTGAAT---AATCCATATGTTCGTAACTTGCCCTTTT-CATT-TTTAGCACATTCTGACAAATTACTTCGCCATATAT-AATAAA---TC-TTTTTCTAA--GT---TT--ATTAAACAC-TTTTGATTG-AGA-TCTGAAGAAA---AGATGTT-ATCGCA-GGAT--ATGCC--TTAGT-------------GATTCA--GT-AAAAAA---TAAAC-ACTGC--TCAACCAACAATTC-TTTTTGTTA-TCAT--T--CAAAAT-CA--TATT----TTC--TTGAAGTGCA--CTC--GAGCA-AAAGTATC---------------GTTTGATTTATG-AATGT-GTT---GTAAA--TA-TTTTAATA--GT-ATTGG-A--TAAGGTTTC-A--ATATATAATGGATAACTACCT-A-TTCCC--CCACTAACTGCATAGAGTTTGAAGGCTTTCTTATGTACA
Reference ( family-754 ) : AATAGAAT-A-TN--ATTTAT---TTCCAATT-T-TG-GACC-CATTAAGGGTATTCAGAAC-AAATGTAAC-ATGA-A--TAT--TG---A---AAT-AAAACAT-AACATA--AA-C----------AAA-------A-A--TA-----AACAGGGGA--AGAG-AT-CCAAATGAT-AGCACT--CAGGTAAAA---AA-------GT--ACAT-G-TACACCATGT-ATT-AT-AA----------TAAT-ATT-GTATCAATTATTA------CATTG-AT-AAAT-TGCAAA----A------TTACAATAGTAGA---TGGCA--------CATT-ATATTCA-GGTATATTATATTCAGGTATAT-CCT--G---CGATAACATT-GCATCTT-TTCTCATGACATTTATATATGTA--GTCAGCAAGACGAGT-TA-TTATATTA-----------CCGTCTT--C---AT-T---------A-----------GC----CATATCAATCTATCTCTA--TTTGA---A-AGC-----AAG-------------GAA--AA----GTT--GG-AA--T-------T-TTCATCTATCATGTGATTTACAA-ATC-CTTGTCTGT-ATTGTT--------CAT-----AAGTT-----GG----GCAT-TCAAACATAAAATGNA-TTTCGTCTTCTACG-GAGTCTGAATTACAAAGTTTACATTTTCGGTCTGCTA-CAGGGACATTTTTGTA-TCTGCCAATTTCAATTTC----TAGCT-T-ATGTGAGCTGATNCGGAAGTTTGTGAAACATT---NAAGAATATGGGGTTTTACTATGGCAGAAAGGTA-TTTTCCCTTGGGAA----GAG-CTTCTTTTGAAT---AATCCATATGTTCGTAACTTGCCCTTTT-CATT-TTTAGCACATTCTGACAAATTACTTCGCCATATAT-AATAAA---TC-TTTTTCTAA--GT---TT--ATTAAACAC-TTTTGATTG-AGA-TCTGAAGAAA---AGATGTT-ATCGCA-GGAT--ATGCC--TTAGT-------------GATTCA--GT-AAAAAA---TAAAC-ACTGC--TCAACCAACAATTC-TTTTTGTTA-TCAT--T--CAAAAT-CA--TATT----TTC--TTGAAGTGCA--CTC--GAGC--AAAGTATC---------------GTTTGATTTATG-AATGT-GTT---GTAAA--TA--TTTAATA--GT-ATTGG-A--TAAGGTTTC-A--ATATATAATGGATAACTACCT-A-TTCCC--CCACTAACTGCATAGAGTTTGAAGGCTTTCTTATGTACA
gi|1 : AATAGAAC-A-TA--ATTTAT---TTCCAATT-T-TG-GACC-CATTAAGGGTATTCAGAAC-AAATGTAAC-ATGA-A--TAT--TG---A---AAT-AAAACAT-AACATA--AA-C----------AAA-------A-A--TA-----AACAGGGGA--AGAG-AT-CCAAATGAT-AGCACT--CAGGTAAAA---TA-------GT--ACAT-G-TGCACCATGT-ATT-AT-AA----------TAAT-ATT-GTATCAACCATTA------TATTG-AT-AAAG-TGCAAA----AAAATG-TTACAATAGTAGA---TGACA--------CATT-ATATTCA-GGTATATTATATTCAGGTATAT-CCT--G---CGATAACATT-ACATCTT-TTCTCATGACATTTATATATATATAGTCAGCAAGACAAGT-TA-TTATATTA-----------CTGTCTT--C---AT-T-------------------------------TCAATCTATCTCTA--GTTGA---A-TGC-----AAG-------------GAA--AA----GTT--GG-AA--T-------T-TTCATCTATCATGTGATTTACAA-ATC-CTTGTCTAT-ATTGTT--------CAT-----AAGTT-----GG----GCAT-TCAAACATAAAATGTA-TTTCATCTTCTATG-GAGTCTGAATTACAAAGTTTACATTTTCGGTCTGCTA-TTGGGACATTTTTGTA-TCTGCCAATTTCAATTTC----TAGCT-T-ATGTG------------AGTTTGTGAAACATT---GAAGAATATGGGGTTTTACTAAAACAGAAAGGTATTTTTCCCTTGAGAAGCTTGAGCCTTCTTTTGAAT---AATGCCTATGTTCGTAACTTGCCCTTTT-CATT-TTTAGCAC--TCTGACAAATTACTTTGCCATATAT-AATAAA---TC-TTTTTCTAA--GTTCATT--ATTAAACAC-TTTTGATTG-AGA-TCTGAAGAAA---AGATGTT-GTCGCA-GGAT--ATGCC--CTAGT-------------GATTCA--GT-AAAAAA---TAAAC-ACTG---TCAACCAACAATTC-TTTTTGTTA-TCAT--T--CAAAAT-CA--TATT----TTC--TT--AGTGCACTCTC--AAGC--AAAGTATC---------------ATTTGATTTATG-AATGT-GTT---GTAAA--TATTTTTAATA--GT-ATTGG-A--TAAGGTTTC----ATATATAATGGAT-ATTACCT-A-CCCCCCACCCCTAACTGCATAAAGTTTGAAGGC--TCTTATGTACA
gi|10 : AATAGAAT-A-TT--ATTTAT---TTCCAATT-T-TG-GACC-CATTAAGAGTATTCAGAAC-AAATGTAAC-ATGA-A--TAT--TG---A---AAT-AAAACAT-AAAATA--AA-CA---------AAA-------A-A--TA-----GAGAGAGGG--AAAA-TT-CCAAATGAT-AGCACT--CAGGTGAAATTTAA-------GA--ACAT-G-TACACCATGT-ACC-AT-AT----------TAAT-AAA-ATATCAATTATCA------CATTG-AT-AAAG-TGCAAA----AACAATGTTGCAATAGTAGA---TGGCA--------CAc
gi|11 : ataaaA--------CATTTATATTTA-G-T-CACCATATTCAGGTAT-T-CTT--G---CAATAACATT-TCATCTT-TTC-----------ATATATGTA--GTCAGCAAGACGAGT-TA-TTATAT------------------TTGAC---ATAC---------A-----------GCCATGCATATCAATCTATCTCTA--TTTGA---A-AGC-----AAG-------------GAA--AA----GTC--TG-CA--T-------TGTTCAT
gi|11 : GTCTGC-ATTGTT--------CAT-----AAGTT-----GG----GCAT-TCAAACATAAAATGAA-TTTCGTCTTCTACA-AAGTCTGA--------------ATTTTCGGTCTGCAA-CAGAGACaagttgggcattcaaacataaaatgaatttcgtcttctacaaagtctgaattttcggtctgcaacagagact
gi|12 : acatttatatttagtcaccatattcaggtattcttgcaataacatttcatcttttcatatatgtagtcagcaagacgagttattatatttgacatacagccatgcatatcaatctatctctatttgaaagcaaggaaaa----------AAA-------A-A--TA-----ATCAGGG-A--AGTG-AT-CCAAATGAT-AGCACT--TAGGTAAAA---AA-------GT--ACATTG-TACAACATGT-ATT-AT-AA----------TAAT-AT--GTATCAATTATTA------CATTG-AT-AAAT-TGC---------------TAAAATAGTAGA---TGGCA--------CATT-ATATTCA-GGTATATTATATTCAGGTATAT-CCT--G---CGATAACATT-GCATCTT-TTCTCATGACATTTATATATATA--GTCAGCAAGACAAGT-TA-TTATATTA-----------Ct
gi|13 : AATAGAAT----------TAT---TTCCAATT-T-TT-GGCCACA-TAAAGGTATTCAGAAC-AAAT-T-AC-ATGA-AATCAT--TG---A---AAT-AAAACAT-A----A--AA-C----------AAA-------A-A--TA-----AACAGGGGA--AGAGAATGCCAAATGAT-AGCATT--CAGGTAAAACG-AA-------GT--ACAT-GTTACA-CATGT-ATT-AT-A------------AATAATT-GTATCAA-TA-TA------CATTGAAT-AAAT-TGCACA----A------ATAC--------------CCA--------CATT-ATACTCAGGGTAT
gi|14 : aaagga-AA--T-------T-TTGATTTTGAATGCAATCCACAA-AT---TTGT-TGTTGTTGTT--------TAT-----AAATA-----GACAGAACAT-TCAAGGATAAATTTAC-TCTAGTTTTGTATG-AAATCTAAATTACACACCCAACATTTTTGGTCTGATAACAGGAATATTTTT-TA-TCTGTCTATTTCAATTTC----CAAATGT-ATGAAAGCTAATTTGAAAATTT-TTAAACATT---T-AGAA
gi|15 : ATAAAGGGTATTCAGAAC-------------------TAT--TA---A---AAT-AAAACAT-AACATA--AA-C----------AAA-------A-AAATA-----ATCAGGG-A--AGAG-AT-CCAAATGAT-AGCACT--TGGGTAAAA---AA-------------------AAACCATGT-ATT-AT-AA----------TAAT-ATT-GTATCAATTATTA------CATTG-AT-AAAT-TGC---------------TACAATAGTAGA---TGGCA--------CATT-ATATTC
gi|16 : gAG-CTTCTTTTTGATTTTAATCCATATGT-CGTAACTTGCCCTTTTTCATTGTTTAGCACATTCTGACAAATTACTTCGCCATATAT-TATTAAGAGTCTTTTTTCTAAAGGT---TTCAATTAAACACATGTTGAT
gi|17 : aAATAGAAT-AATA--ATGTAT---TTC-AATT-TATG-GACT-CATTAAGGGTA-TCAGAAC-CAATGTAACAACGT-A--TAT--TGCCAA---GAT--AAACAT-AACAT---AA-C----------AAA-------A-A---A-----TACAGGGGA--AGAG-AT-CCAAag
gi|18 : aaag-A-TG--ATTTATCCTTTCCAATTAC-TGTGATCTCCTTAAGGGTATTCAGAACAAAATGTAAC-ATAAGA--CATGATG---ATATAAT-AACGCATGAAAGTACTAA-C----------AAAT------ATA--TA-----AACAG
gi|19 : aacaC-----AAG-------------AGA--AA----ATT--GG-AAATT-------T-TTCATCCATCATGTGATTTAAAATATTACTTGTCTGTAATTGCTGTGATATACATTTA--GAGTTCGCGAAG----GCATATCAAACACAA
gi|2 : AAAACGAGT-TA-T---ATCA-----------TCATCTT--C---AT-TTGACATTTAA-----------GC----CATATCAATCCATCTCTA--TTTGA---A-AGC-----AAG-------------GAT--TA----GTG--GG-AA--A-------T-TTCATCTATCAGGTGGCCAACAA-ATC-CTTGTCTGT-ATTGTT--------CAT-----AAGCT-----GG----ACAT-TCAAACATAAAATGTA-TTTCATCTTCTACA-GAGTCTGAATTACACAGTTTACATTTTCGGTCTGCTT-CAGGGACATTTCTGTA-CCTGCCAATTTCAATTTC----TAGTT-TAATGTGAACTGATATGGAAGTTTGTGAAACATTTTAAAAGAATATGGGCTTTTACTATGGTAGAAAAGTA-TTTTCCCTTGG--A----TAG-TTTCTTTTGAAT---AATCCATATGTTCGTAATCTACCCTTTT-CATT-TGCAACACATTCTGACCAGTTAT-----------T-AATAAA---TC-CTTCCCTAA--G----TT--AGAAAAC-----------------TCTGAAGCAA---AGATGTT-TTCACA-GGAT--ATTCCAATT--T-------------GATTCA--GC-CAAGAT---TAAAC-ACTGC--TCAACCAACAATTC-GTTTTGCTA-TTAT--T--CAATAT-CT--TATT----TTC--TTGAAGTG---------------------TC---------------GTTTGATTTATA-AATAT-GCT---GTAAC--TA--TTGGATA--GT-ATTGG-ATTTAAAGTTTCAA--ATATATAATGGATAACTACCT-ATTTCCC--CCATTAA-TGTATAGA--TTG-AGGCTTTCTTATGTACA
gi|20 : -T-TG-GACC-CATAAAGGGTATTCAGAAC-AAAT--AAC-AAGA-A--AAT--TG---A---AAT-AAAACAT-AACATA--AA-C----------AAAAAAAAATA-A--TA-----ATCAGGGGA--AGAG-AT-CCAAATGAT-tgagagtttaccacttagatgttttcaaggaattttcaatatcataaattggtctcttagcagcagcatattctgaaat
gi|21 : AAGAGAAT-A-TC--ATTTAT---TTCCAATA-C-TG-GACC-CAT------TATTCAGAAC-AAATAT-TT-ATGA-A--TAT--TG---A---AATAAAAACAT-AAAATA--GACC----------AAA-------A-A--TA-----AA
gi|22 : tagAGGGGA--AGAA-AT-CC--ATGATGAGCACT--TA-GTAAAA---AAAAAAAACG---ACAT---TACACCATGTAATG-AT-AA----------TAATAATT-GT
gi|23 : AGTTTACATTTTCGGTCTGCTA-CAGGAACATATTTGTA-TCTGCCAATTTtat
gi|3 : AATAGAAT-A-TC--ATTTAT---TTTCAATT-T-TG-GATC-CATTAAGGGTATTCAGAAC-AAATGTAAC-ATGA-A--TAC--TG---A---AAT-AAAACAT-AACATA--AA-CT---------AAA-------A-A--TA-----AACAGGGGA--AGAG-AT-CCAAATGAT-AGCATT--CAGGTGAAATTTAA-------GT--GCAT-G-TACATCATGT-ATT-AT-AT----------TAAT-ACA-ATATCAATTATTA------CATTG-AT-GAAG-TGCAAATAATG------TTTCAGTAGTAGA---TGCCA--------CATT-ATATTCA-AGTATATT----------------CT--G---CGACAACATT-GCATCTT-TTCTCATGACAATTATTTATGTA--GTCAGCAAGACAAGT-TA-TCATATTA-----------CTGTCTT--C---AT-TTGACATA--A-----------GC----CATATCAATCTATCTCTA--TCTAA---A-AGC-----AAG-------------GAA--AA----GTT--GA-AA--T-------T-TTCATCTATCACGTAATTTGCAA-ATC-CTTGTCTGT-ATTGTT--------CCT-----AAGTT-----GG----GCAT-TCAAACATAAAATGAA-TTTCATCTTCTACT-GCGTCTGGATTACAAAGTTTACATTTTCGATCTGCTT-CAGGGACATTTTTGTA-TCTGCCAATTTCAATTTC----TAGCT-T-ATGTGAACTGATGCGGAAATTTGTGAAACATT---TAAGAATATGGGGTTTTACTATGACAAAAAGGTA-TTTTTCCTT-TGAA----AAG-CTTCTTTTGAAT---AATCCGTATGTTCGTAAt
gi|4 : tagTTAT---TTCCAATT-T-TG-GACC-CATTAAGAGTATTCAGAAT-AAATATAAC-GTGA-G--TGT--TT---A---CAT-AAA--GT-AACAT-------------------A-------A-A--TA-----ACCAGGGTATCAAAG-AT-CCAAATAAT-AGCACT--AAGGTGAAA-------------C--TCA--A-TACACAATGT-ATCAAT-AATCAAATTAATTAAT-ATA-ATGTCAATTATTG------CATGT-AT-AAATATACAAAGT--G------TTATGACAGTAGA---TGGCGTAAAATGCCATA-AAATTAT-GGTATGC--TACTTAGCT-TATGCCT--GACTNNNNNNNNNN-NNNNNNN-NNNNNNNNNNNNNNNNNNNNNNN--NNNNNNNATAC-AGTGTA--TATATT--------------GTCTG--CAAAAC-A---------A-----------GT----TATATCA--CTATTTTCA--TTTGACATA-AGCCATATAAATCTATCTTTATTTGAACGCA----GTG--AG-AA--TTTGGTCTT-TTCTTCTATCGTATGATTTACAA-ATT-GTTGTCTAT-ATTGTT--------CAT-----AAGTA-----GG----GCAT-TCAAAAAC-AAGTGAA-TTTCATCATCTACA-GAGTCTGAATTACAAAATTTACATTTGCGGTCTGCTA-CAAGGACA-TATTGTG-TCTGCCAATTTCAATTTTTTTATAGTT-T-ACGTGAGCTG----------------AACAGT---GAAAAATATAG-----TA--ATGGTAGAAAAATA-TTTTCCCTTGG--A----GAG-CTTCTTTTGAAT---CGTCCATAAGTTCGTAACTTGCGCTTTT-AATT-tgtacatctccgatgtataaaaagt
gi|5 : TA--AA-C----------AAA-------A-A--TACAGATAACAGGGAA--AGAG-AT-CCAATTGAT-AGCACTTTCAGGTCAAA---AG-------G-------------A--ATGT-ATT-ATCAA----------TGATCATTAGTATCAATTATAATGGCGGCATTG-ATTAAAT-TGCCCT-----------TTA-AATAGTAGAGAATGGCA--------CATT-AGAT----GATCC-TTCTAGT--GGTATATGCCTTGG---CGATAACATTCGCATGTCGTTCTCATGACATT-A-ATATGTA--GTCAGCAAGACAAGT-TAGTTATATTAGCTACTGATTGTCGTTTT--CT--AT-T---------ATGACCATGAAGGC----CATATCAATCTATCTCTACTTTTGA---AGAGC-----AAGTTC----------GGA--AATATTGTTACGGTAA--TGTA----T-TTAATC-ATCATGTGATT-ACAA-ATC-CTTGTCTGT-ATTGT---------CATTGTGAAGGTT-----GG----GCAT-TCAA-CATAAAATGTACTTTCATCTTCCTCGCGAG----AGT--CAAGTTTTACATTT-CGGTCTGCTAACAGGGACATTGTTGTACTCTGCCAATTTAAGTTTC----TAGCT-T-ATGTGggtaata
gi|6 : atagtatatctttaatttttttccatatttttttggaacaaaattggtgaacacatcggacattgtgaatTTAAACAC-TTTTGATTGTAGA-TCTGAAGAAA---AGATGTT-ATCGCA-GGAT--ACGCT--TTAGTT------------GATTCA--GT-AAAAAAAAATAAAC-ACTGCATTCAAACATCAATTC-TTTTTGTTA-TCAT--T--CAAAAT-CA--TATT----TTC--TTGAAGTGCA--CTCTCAAGC--AAAGTATA---------------ATTTGATTTATG-AATGT-GTT---GTAAA--CA--TTTAACA--GT-ATTGG-G--TAAGGTTTC-AATATATATAATGGATACCTACCTAA-TTCCC--CCA-TAACTGCAT--AGTTTGAA--TTTTCTTATGTAC
gi|7 : TTG-TTA-AGA-T-TGAAGAAACGCAGTTGTTCATCACAAGGATTGATGCG--TAAGTCGCATCGCTGCTAGTTTCATGGTGAAAAAA---TAAACCACTGC--TCAACCAACAATTCTTTTTTGTTATTCATACTAACAAAATGCAGGGATTCCTGTTCGATTG-AGTGCA--CGT--GAGCA-AAAGTATCTGATCCCAACTTTTTGTTTGATTTATATGATGTGGTTTTGGTAAAATTAATTTTTATAACGTAATTGGAA--TAAGGTTTC-A--ATAccca
gi|8 : ttgaaAATAGAATTA-TAGAATTTAT---TTCCAATT-T-TG-GACC-CATAAAGGGTATTCAGAAC-------------------TAT--TG---A---AAT-AAAACAT-AACATA--AA-CAAAACAAAAAAAA-------A-A--TA-----ATCAGGGGA--AGAG-AT-CCAAATGAT-AGCACT--TAGGTAAAA---AA-------GTACACAT-G-TACAACATGT-ATT-AT-AA----------TAAT-ATT-GTATCAATTATTA------CATTG-AT-AAAT-TGC---------------TACAATAGTAGA---TGGCA--------CATT-ATATTCA-GGTATATTATTTTCAGGTATAT-CCT--G---CGATAACATT-GCATCTT-agtatcatc
gi|9 : agATTCTGACAAATTATTTTACAATATATTAATAAA---TC-TTTTTTAAG--GT---TT--ATTTAACAC-TTTTGATTG-AAAATCTGAAGCAA---AGATGTC-ATCACA-GGGT--ATTCC--TAATT-------------GATTTA--GC-AAAACA---GAAAC-ACTGC--TCAACCAACAATTC-TTTTTGTTA-TTAT--T--CAATAT-CT--TATT----TTC--TTGAAGTGCA--CTC--TCACAGAAATTGTT---------------ATTTTATTTATG-AATAT-GTT---GTAAA--TA--ATTAATA--GT-ATTGG-A--TAGAGTTTC-G--ATATTTA
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|24 ): AGGAAAATAATGAAATCAAATCCTCAATGAAAATTCATGATTATACAG