lowQualScore : 2222222222222222222222222222222222222222222222222222222222222222222222222222222222 111111111111111111111111111111111111111111111111111111
lowQualScore : 1 1 22222 33333 333 1 11 5555555555555555555555555555555555555555555555555555555555555555555555555555555555 66666666666666666666666666666666 1 111 333333 111 1 1 11 11 55555555555555555555555555555555555 11 1 1 1111 1 3333 2222222 1 2 5555555555 2 22222222 1111111111111 111 3333 1 777777777777777777777777777777777777777777777777777777 1 1 1 22222 1 1 1 11 11111 1 1 2222 44444444 11 4444444444444444444444444444444444444444444444444444444444444 222 111 1111 11111111 11111 11 2222222222 333333333 333333333333333333333
lowQualScore : 3 3 77777 33333 666 5 6 0 44 5555555555555555555555555555555555555555555555555555555555555555555555555555555555 22222222222222222222222222222222 2 888 9 7 77 888888 0 2 3 3 222 0 1 0 0 11 77 00000000000000000000000000000000000 2 33 4 0 0 7 8888 3 0 0000 1111111 0 8 1 5555555555 2 0 66666 33 00000000 9999999999999 0 0 777 5555 3 777777777777777777777777777777777777777777777777777777 6 0 0 0 2 55555 0 0 0 0 22 66666 3 0 6 6 6 6 6 6 6666 7 3 3 0000 5 1 11111111 55 4444444444444444444444444444444444444444444444444444444444444 0 4 5 666 44 000 4 4 8888 11111111 777 8 8 8 66666 0 4 66 66 2 3 666 8888888888 4 3 44 111111111 44 6 3 666666666666666666666 55
lowQualScore : . . ..... ..... ... . . . .. .................................................................................. ................................ . ... . . .. ...... . . . . ... . . . . .. .. ................................... . .. . . . . .... . . .... ....... . . . .......... . . ..... .. ........ ............. . . ... .... . ...................................................... . . . . . ..... . . . . .. ..... . . . . . . . . .... . . . .... . . ........ .. ............................................................. . . . ... .. ... . . .... ........ ... . . . ..... . . .. .. . . ... .......... . . .. ......... .. . . ..................... ..
lowQualScore : 3 3 77777 33333 777 0 0 7 00 2222222222222222222222222222222222222222222222222222222222222222222222222222222222 00000000000000000000000000000000 3 777 0 3 00 333333 2 2 2 0 888 0 2 8 8 00 66 55555555555555555555555555555555555 5 88 0 0 0 0 0000 3 7 7777 8888888 0 8 2 2222222222 2 0 22222 55 88888888 0000000000000 7 7 777 7777 3 666666666666666666666666666666666666666666666666666666 0 0 0 0 0 00000 2 0 0 0 55 22222 0 8 7 7 7 0 7 7 7777 8 5 2 2222 7 7 66666666 77 9999999999999999999999999999999999999999999999999999999999999 8 4 1 444 66 888 4 4 1111 55555555 888 9 0 0 66666 8 0 55 33 3 6 444 3333333333 7 3 66 111111111 22 2 3 888888888888888888888 00
consensus : AAG-TTAACTTAG-ATCAT-A---ACGGG-----GGCAAT-GAGTTTCAGAAATTTCAAATGGA-AGGGNG--GGGNTGNGTCGTTACANGTCGGACGTCGGGCTGTTANAGNNCGGGACGNCAGNGAG-------TAACT-----CCTANAGACAAATGCAATTTGT--------GCAT-ATTGT-TG-TTT-ACAAGATGGACTAAT-G-ATTGGCGCAAAAGTTTATAGATA------TAGTAGTGTTGCTAAAACGCGGAACGGAAAA-CGG-ACGGGAAATTTAAG--AAT-TACATGT-TTAA-A-AATCATGAAACCCGGAGAAATTTA--ATTGNA--TTANAA-TCAAAATC-GTAGGAATTTGTTCAC-AGCGGTAAAACAATTT-TATCTT---AAATTCT--ACAACAT-AAATTGATTAAGCTAAGTTG-----NA---TGTCGGTCATGNAATTTCTCTGTACTAG-CGTTTTACAAAAACTTTGCG-ATTTCATCTTTGACAGAGATGTTAGCG-AGCAGAG-G-CAGAGA-ATTGAA--------G---GGGGGGAGAC-AAAA-TA--CGACACAGGCCCCTTCCCC---GGCTATTT-AA-CATTCGGTAGG-AAATGTGTAA-----GATCTCG-TCTATTTTGTATT-GGAGTGCT-GTTAACATTCAGTCCCT-GTTATTTAAAA-AATAATTA-AT-CAAA-CG-CAAGATGTTT-AC-TTANTGACTTGAATAAGATNA--CG-AATTNA------TCGTT--ACATTT-----------ACAT-GCC------------ACA--TTT--CTG-CATGA-CCGTA--T-TACTG-AGATGC-TC-GCCATTT-A-TTG-CTATT-ATAA-ATT----A---AAT---A-GTT-TG-GTT---G-TAC-AAT--GTT-CCGTT-T---CTCT----T--TGTTTC-GG--TAT--------AG--GTTT-CGTTT-CG-T---TT-C-----GG-----TTT--CGTTTCGCACTT
Reference ( gi|2 ) : AAG-TTAACTTAG-ATCAT-A---ACGGG-----GGCAAC-AAGTTTAAAAAATTTCAGATGGG-AGGGGGTTGGGTTGTGTTGTTACAGGTCGGACATCAGG--G--ATAACTCGAAACAAC-GGGAGGTTTCAGTATTTCTTGCCCTGAAGACAAATGTA---TGT--------GCAT-ATTGTATG-TTTTACAAGATAGACTAAT-GAATTGGTGCAAAAGTTTATGAATA------TAGTAGTGTTACTAAAACGTGGAAAAGAAAA-CCG-ATGAGAAATTTAAG--AAC-TACATGT-TTAA-G-AATCATGAAACCTGGAGAAA---A--ATTGGA--TTAAAA-TCAAAATT-GTAGGAATTTGTTCAC-ATCGGTAAAACAATTT-TGTCTT---AAATTCT--ACAACAT-AAATTGATTAAACGAAGTTG-----TA---TGTTAGT-ATGAAATTTCTCTGTGCTAG-TGTTTTACAAAAACCTTGTA-ATTTCATCTTTGGCAGAGGTGTTAGTG-AGCAGAGGA-CAGAGA-ATTGAA--------G---GGGGGGGGAC-AAAA-TA--CGACA-----------------GGCTACTT-AA-CATTCAGTAGG-AAGTGTGTAA-----GATCTCG-TCTATTTTGTATT-GGAGTGCT-GTTAACAACCAGTTTCT-GTTATTTAAAA-AATAATTA-AT-CGAA-CA-CAAGATGTTT-AC-TTACTGACTTGAATGAGATCA--CG-AATTTA------TCGTT--ACATTT-----------ACAT-GCC------------ACA--TTT--CTG-CATGA-CTGTA--T-TACTG-AGATGC-AC-GCCATTT-A-TTG-CTATT-ATGA-ATT----A---AAT---A-GTT-TG-GTT---G-TAC-AAT--GTT-CCGTT-T---CTCT----T--TGCTTC-GG--TAT-------AAG--GTTT-CGTTT-CG-T---TT-T-----GA-----TTT--CGTTTCGCACTT
gi|1 : AAGCTTGACTTAG-ATCATTA---ACGGC-----GGCAA--GAGTTTCAGAAATGTCAAATGCATAGGGAG--GGGGTAAGTCG-----GGTTGGA--TTGGGTTGTTATAGGTCGGGACGTCAGGGA--------TAACT---------AAGACAAATGCAATTTGT--------TCTTTATTACA-------ACAAGAT-GACTAATTGAATTGGCGCAAAAGTT-ATAAATA------TAGTAATATTACTAAAACGTGGAAAATAAAATCCG-ATGAGAAATCTAAA--AAAATACATGTATTAT-A-AATCATGAAAACCGGAGAAATTTA--ATCGTAGTTTAAAAATCAAAAATAGTGGGAATTTGTTCAC-AT-GGTAAAACAATTTATATTTTTTAAAATTCTTTGTCACATTAAATTGATTAAGCTAAGTTGGTATGTAGAATGTTGGTTATATATTTTCTCTGTACAAGGTGTTTTACAAAAACTTTGTA-ATT-CATCTTTGGCAGAGATGTTAGCGCAGCAAAGGGGCAGTGA-ATTGGA--------ATGCGAGGGGAGAC-AAAAATAATCGG-------------------GGTTATTT-AAACATTCGGTGGGGAAATGTTCAACTCTTGATCTTGGTCTATTTTGTATTTGAAGTGCTTGTCAAATTCCAGTCCCTTGTTATTTAAAACAATAATTA-AT-CAAG-CA-CAAG-TGTTT----TTACT--CT-------GATT----G-AATT-A------TCGTT--ATATTT-----------ACAT-GCC------------ACA--CTTTACTGATATGA-CCGTA--TCTACTG-AGATGC-TTTGCCATTT-A-TTG-CTATTTATAA-ATT----A---AAT---A-GTT-TG-GTT---A-TAC-AAT--GTT-CCG-C-T---CTCT----TTATGTTTC-GG--T----------GG--GTTT-CGTTT-TG-A---TT-CGGATAGG-----TTT--CGTTTCG
gi|9 : acctgttagtgcgaaaacgaaaatannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaaaaatcttgctgaagcagaaataacagaaccaatttgtacaaccaagtttatatttaatcataatatcaataaatgataatatctcgatccctgtgaaaggtgccacataaagataataatcgattagggtaaatgatggggtcaccatttattacaatcaacagttagagaagaagaaaaccggtgtctgaagaaagtaaaaatatcacagaaaacagggcaaatcataaaaggagggggggtgggacacaaagtaaaaatcttAAG-TTAACTTAG-ATCAT-A---ATGGGACAGGGGCAATTGAGTTTCAGAAATTTCAGATGGG-AGGGTGTttttctatttcgtt
gi|12 : cctgtaaagtgcgaaacgaaatagaaacgaagcgaaatctaccaaaacgaaacgaaatctaccgaaatgaaacgaaacccaccgaaacgaaacgaaacctaaaagcacaaggtaaaaatcttAG-TTAATTTAGCATCAC-ATAAACGGG-----GGCAGT-GAGTTCCAGAAATTTCAAATGGA-AGGGG---GGGTTGC----TTACATGTCGGACGTCAGGC-G--AAAACACGAAACAAC-GCGAG
gi|11 : gggtgggggacccaacagtaaaaatcctCCTACAAACAAATGTA---TGTATACATGCGCAT-ACTGT-TGATTTTACAAAATGGACAAAT-G-ATTGGGACAAATGTTTCTAGATATACATTTAGGAGTGTTGCTTCAATGTGG-ACGGGAAA-TAG-AAGGGATATATAAG--AAT-T
gi|3 : GT--------GTAT-ATTGTTTG-TTTAATAAGATACACTAAT-GCATTGGCGCAAAAGTTTATAGATA------TATTAGTTTTGCTAAAACGTGGAAAAGAAAA-CGG-ACGGGAAATTTAAG--AAT-TACATGT-ATTA-T-AATCAT------T----------A--ATTGGG--TCATAT-TCAAAATT-GTAGGAATTTGTTCAC-AGCGGTAAAACAATTT-TACCTT---AAATTCT--ACAGCAT-AAATTGATTAAGCTAAGTTG-----AA---TGTTGGT-AAAACATTTCTC---------------ACAACAAACTTGCA-ATTTCACCATTGACAGAGATGTTAGCG-ATCAGA----CAGAGTTATTGAA--------G---GGGGG-------AAA-T---CGACACAGACCCTTTTCTCGT-GGCTATTTTAA-CATTCAGTACG-AAGTGTGTAA-----GATCTCG-TTGATTTTGTATT-GGAGTGCT-GTTAACAATCAGTT-----------AAAA-AATTATCA-AT-CAAA-CA-CAAGATTTTTTAC-TTATTGACTTGAATAAGATAA--TG-AATA-A------TCGTA--ACATTT-----------ACAT-GT----------------------------ATGA-CCGTT--T-TACTG-AGATGC-TC-GC-ATTT-A-TTG-CTATT-ATGA-ATT----A---AAT---A-ATT-TG-GTT---G-TAC-AAT--GTC-CAGAT-T---CTTT----A--TGTTTC-TG--CAT-------CAG--GTTT-GGTTT-CG-----GC-T-----GG-----TTT--CGTTTCG
gi|7 : TGTTGCTAAAACGCAGAGCGGAAAA-CGGAATG-GAAA-TTAAGGTAAA-TGTATAG-TTAA-A-TACCA-AAAACCGTGAAAAA---AGTGTTTTA--TTTTAA-TCAAAATC-CT---AATTACTTTACAAGCGGTGAAACAATTG-TGTCT------GTTC---------T-AGGTTGATTAATC---CTCG----------TGTCAGTCATGTGA------TGTCATAG-CATTTTAAAAAAACTTTGCGCATTTTATtttaagtggatttcgtttcgtttttggtgtgtttcatttcgtttcgtttcagtagatttcgtttcgattttggtttcgcactttactgg
gi|16 : AAATTTAAG--AAT-TACATGT---AATGTAATCAGGAAACCCGGAGATATTTA--CTTGGA--TTAAAA-TCAAAATC-GTAGGAATTTG
gi|4 : AATTTT--ACAACAT-AAATTGATTAAGCTAAGCTG-----GA---TGTTGGT-ATGAAATCTCTTTGTACTAG-TGTTTTACAAAAA--------------TCTTTGACAGAGGTGTTAGCT-AGCAGAGTG-CAGACA-ATTGAAATGGGGGGG---AGGGGGAGACTAAAA-TA--TGACACAAGCCCCTTCTCTCGGGGCTATTT-AA-CATTCGGTAGG-AAATGTGTAA-----GATCTAG-TCTATTTTGTATT-GGAGTGCT-GTTAACATTCAGTCCCT-GTTATTCAAAA-AATAATTA-AT-CAAA-CG-CAAGATGTTT-AC-TTATTGACTTAAATAAGATCA--CG-AA-TGG------TCGTT--ATA-TT-----------ACATCGCC------------ACAACTTC--CTG-TATGA-ACGTA--T-AACTG-AG-TGCTTC-GCCA-TT-A-TTG--TATT-ATAA---T----A---AAT---A-GTT----GTT---GCCAC-AAT--GTT--CG-T-T---CTCT----T--TGTTTT-CGTCTATTTTTATAAAG--GTTC-CGTTTACG-G---TT-A-----GG-----TTT--CGTTT
gi|8 : -----------------GGCTATTT-AA-CATTCAGTAGG-AAATGTGTAA-----GATCCCG-TCTATTTTGTATT-GGAGTGCT-GTTAACATTCATTCTCT-GTTAGTTAAAA-AATAATTA-AT-CAAA-CG-CAAGATGTTT-ACATTAATGAC-TGAAT--AATCA--CG-AATTAA------TCGTT--ACATTT-----------ACAT-GCC------------ACA--gtttcgtgtggggttcgtttcgtattggtgggtgttgttatcgatttcggtagaatttcgttcgttcagtttttcgattgtcgcgcacattttacag
gi|6 : acaaaaatacgacacgggtcctttctctcggAA-AATAATTA-TT-CAAA-CATCCAGATGTTT-AC-GTAGTGACTT-AATAAGATGAC-CGTAATTCACTGCAGTTGTTCGCCATTTAATTGGCTATAACAT-TAA------------ATA--TTT--CTG-C-----TTGTA--T--------AATG---T-TCCGTTT---TT--CTA-T-ATTG-TTT----CGGTAAT---AGGTT-TGCGTT-----T-C-GATAGGTT-TCATT-T---C-----------GTTTCGGG--TAT--------AG--GCTT-CGTTT-CA-A---TT-TCGGTGGG-----TTTCCCGTTTCGCc
gi|5 : A-AATAATTATATGCAAATCA-CAAGATGTTT-AC-GTAGTGACTT-AATAAGATGAACCG-TAATTACTGAG-TTGTTCGCCATTT-----------AATT-GCTTGATAACATTAAATA--TTT--CTG-CTTG---------T-TAT----AATGT-TC--CCGTTC---TTA-CTATT-TT----TTTCGGT---AAT---AGGTT-TGCGTT-----T-C-GATAGGTT-TCATT-T---C-----------GTTTC-GG--TAT--------AG--GCTT-CGTTT-CA-T---TTCT-----GGTGGGTTTC--CGTTTCGCttcggctgggatttcgtttcggggtagatttcgtttcgtttctatttcgttgcacactttacaag
gi|1 : -AATCGA------TTATT--ATCTTT-----------ATGT-GGC------------ACC--TTT--C-A-CAGGG-----------ATCG-AGATAT--T-ATCATTT-A-TTG-ATATT-ATG--ATT----A---AATATAA-ACT-TG-GTT---G-TACAAATTGGTT-CTGTTAT---TTC--------TGCTTC-AG----C-------AAG--ATTT-ttcggtgggattcgtttcgggtagatttcgtttcggttttctatttcgtatgcaaactcttacaagt
gi|6 : acctgttagtgcgaaaacgaaaatannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaaATGA-CCGTAATT-CACTGCAGTTGT-TC-GCCATTT-AATTGGCTATA-AC---ATT----A---AAT---A-TTTCTG-CTT---G-TAT-AAT--GTT-CCGTT-T---TTCTATA-T--TGTTTC-GG--TAA-------TAG--GTTTGCGTTT-CGATAGGTT-T-----CA-----TTT--CGTTTCGagggtaaatgatggggtcaccatttattacaatcaacagttagagaagaagaaaaccggtgtctgaagaaagtaaaaatatcacagaaaacagggcaaatcataaaaggagggggggtgggacacaaagtaaaaatcttaagcttgacttagatcattaacggcggcaagagtttcagaaatgtcaaatgcatagggagggggtaagtcgggttggattgggttgttataggtcgggacgtcagggataactaagacaaatgcaatttgttctttattacaacaagatgactaattgaattggcgcaaaagttataaatatagtaatattactaaaacgtggaaaataaaatccgatgagaaatctaaaaaaatacatgtattataaatcatgaaaaccggagaaatttaatcgtagtttaaaaatcaaaaatagtgggaatttgttcacatggtaaaacaatttatattttttaaaattctttgtcacattaaattgattaagctaagttggtatgtagaatgttggttatatattttctctgtacaaggtgttttacaaaaactttgtaattcatctttggcagagatgttagcgcagcaaaggggcagtgaattggaatgcgaggggagacaaaaataatcggggttatttaaacattcggtggggaaatgttcaactcttgatcttggtctattttgtatttgaagtgcttgtcaaattccagtcccttgttatttaaaacaataattaatcaagcacaagtgtttttactctgattgaattatcgttatatttacatgccacactttactgatatgaccgtatctactgagatgctttgccatttattgctatttataaattaaatagtttggttatacaatgttccgctctctttatgtttcggtgggtttcgttttgattcggataggtttcgtttcgttttctatttcgtt
gi|5 : aaaataattattcaaacatccagatgtttacgtagtgacttaataagATGAACCGTAA-T-TACTG-AGTTGT-TC-GCCATTTAA-TTG-CT-TG-ATAACATT----A---AAT---A-TTTCTG-CTT---GTTAT-AAT--GTTCCCGTT-CTTACTAT----T--TTTTTC-GG--TAA-------TAG--GTTTGCGTTT-CGATAGGTT-T-----CA-----TTT--CGTTTCGggtataggcttcgtttcaatttcggtgggtttcccgtttcgcttcggctgggatttcgtttcggggtagatttcgtttcgtttctatttcgttgcacactttacaag
gi|22 : aaataattatatgcaaatcacaagatgtttacgtagtgacttaataag--T-TACTG-AGTTGC-TC-GCCATTT-A-TTG-CTATT-ACAA-ATT----A---AAgtataggcttcgtttcatttctggtgggtttccgtttcgcttcggtgggattcgtttcgggtagatttcgtttcggttttctatttcgtatgcaaactcttacaagt
gi|19 : A-ATT----A---AAT---A-GTT-TG-GTT---G-TAC-AAT--GTT-ACGTT-T---CTCTTTAAT--TGTTTC-GG--TAT-------AGG--GTTT-CGTTT-C
gi|10 : TT-TC-GTTTCGG-TAT-AG---GTT-TCGTT-T---C-----------GTTTC-GG--TG----------G--GTTT-CGTTT-CG-T---TT-T-----TA-----TTT--CGTTTCGCACTTaat
gi|9 : aatattacatgtataatctataatggtctgcttatttttgcttcggtataaatatttgcttggtttcggtaggtttcaTT-T---CGTT----T--CGTTTT-GG--TA----------G--ATTT-CGCTT-CG-T---TT-C-----TA-----TTT--CGTTTCGCACTTta
gi|18 : cctgtaT----T--TGTTTC-GG--TAG-------ATTTTGTTT-TGTTT-CA-T---TT-C-----TA-----TTT--CGTTTCGCACTTtctaccgaaatgaaacgaaacccaccgaaacgaaacgaaacctaaaagcacaaggtaaaaatcttaagttaacttagatcataatgggacaggggcaattgagtttcagaaatttcagatgggagggtgt
gi|21 : acctgta--GTTT-CGTTT-CG-T---TT-C-----GA-----TTT--AGTTTTGCACTTacaaaatacaccgaaacgaa
5 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|13 ): TTGTTCACGACTCCGTGCATGTCCAAGTTTCGTTTCAGTAGATTTCGTTTCAGTAGATTTCGTTCGGTAGATTTCGTTTCGTTTCAGTAGATTTCGTTCCGTTTCGTTTCGCAATTTACAGG
Unaligned ( gi|14 ): CTTAAAGTGCGAAACGAAAACGAAACAAAAACCTGCCGAACGAAACGAAGTCTACCGCGAAACGAAACGAAATCCACTGAAA
Unaligned ( gi|15 ): TTCAGTGGATTTCGTTTCGTTTCGGTAGACTTCGTTTCGTTTCGGCAGGTTTTGTTTCGTTTTCGTTTCGCACTTTACAGG
Unaligned ( gi|17 ): GTGGGTTTCGGGATTTCGGTTAGATTTCGGTTGTTTCGTTTCGTGTTTCGTTTCGATTTTCGATTCTTTCGCACTTACA
Unaligned ( gi|20 ): GTAAATTTCGTTTCATTTCGGTAGATTGCGTTTCGTTTTGCATTTTACAGGTAC
Alignments
lowQualScore : 1 1 11111 22222 11 1 1111 111111 11 44444 1 55555555555555555555555 55555555 222222222222 111111 222222 222222222 111 11 1 1 2222 111 333333333 1 1111111111 11111 1 11 1111 1 444444444444 66666666666666666666 22222 1 11 1 222222222222 11111 2222222222222222222222222222222 111 1111 11111 11 222222222222222222222 222222222222 44444444444444444444444444444444444444444444444 1111111111111111 222222222222222
lowQualScore : 0 0 88888 55555 77 0 4444 1 666666 1 00 0 88888 1 222 11 11 2 1 33333333333333333333333 0 22222222 3 3 555555555555 8 888888 0 3 888888 2 0 5 8 3 6 99 88 000000000 88 99 1 666 1 11 1 8 8 1 3 0 8 0 0000 111 0 8 0 777777777 2 8 0 1 8 0 4444444444 8 44444 5 0 33 8888 0 777777777777 33 8 8 44 77777777777777777777 8 8 8 00000 8 8 8 1 8 0 1 8 0 5 5 5 5 77 5 5 1 0 1 1 33 0 3 555555555555 00000 7777777777777777777777777777777 66 77 5 999999999 66 4 3 4 55 666 5 4 222 2222 666 999 6 6 00000 1 2 11 44 333333333333333333333 2 333 222222222222 0 1 22 3 22222222222222222222222222222222222222222222222 1 3 1 1 3333333333333333 333333333333333 333 1
lowQualScore : . . ..... ..... .. . .... . ...... . .. . ..... . ... .. .. . . ....................... . ........ . . ............ . ...... . . ...... . . . . . . .. .. ......... .. .. . ... . .. . . . . . . . . .... ... . . . ......... . . . . . . .......... . ..... . . .. .... . ............ .. . . .. .................... . . . ..... . . . . . . . . . . . . . .. . . . . . . .. . . ............ ..... ............................... .. .. . ......... .. . . . .. ... . . ... .... ... ... . . ..... . . .. .. ..................... . ... ............ . . .. . ............................................... . . . . ................ ............... ... .
lowQualScore : 0 0 55555 00000 00 0 5555 0 000000 0 33 7 00000 0 777 33 77 3 0 33333333333333333333333 7 33333333 2 2 222222222222 8 888888 2 2 888888 8 8 0 0 2 4 22 88 222222222 88 44 0 666 0 00 0 0 0 4 8 0 8 0 8888 888 6 0 8 888888888 8 2 8 0 0 8 4444444444 0 66666 6 0 88 8888 0 888888888888 22 0 0 00 22222222222222222222 0 0 0 00000 0 0 0 4 0 8 4 0 6 7 7 7 7 11 7 7 0 1 4 0 66 0 2 666666666666 88888 6666666666666666666666666666666 99 99 7 888888888 44 0 7 0 66 555 0 0 777 9999 444 000 7 7 00000 4 9 00 11 222222222222222222222 1 777 111111111111 1 8 55 6 33333333333333333333333333333333333333333333333 7 5 8 8 4444444444444444 000000000000000 333 9
consensus : AAG-TTAACTTAG-ATCAT-A---ACGGG-----GGCAAC-GAGTTTCAGAAATTTCAGATGGG-AGGGNG--GGGTTGCGTCGTTACAGGTCGGACGTCGGGC-G--ATAACTCGAAACGACGGGG------AGTANCTC-----CTGAAGACAAATGTA-----AC-TGTGCATATTGT-T-G--TTT-A-CAAGATGGACTAAT--G-A-TTGGCGCAAAAGTTTATAGATA------TAGTAGTGTTGCTAAAACGTGGAAAAGAAAA-CGGANGGGAAATTTAAG--AAN-TACATGT-TTAAA---AATCATGAAACC-CGGAGAAATTTAATTGGA--TTAAAA-TCAAAA-TCGTAGGAATTTGTTCAC-AGCGGTAAAACAATTT-TGTCTT---AAATTCT--ACAACAT-AAATTGATTAAGCTAAGTTGG--------ATGTTGGT-ATGAA-ATTTCTCTGTACTAG-CGTTTTACAA-AAACTTTGCA-ATTTCATCTTTGGCAGAGGTGTTAGCG-AGCA--GAG-G-CAGAGA-ATTGAA--------G---GGGGGGAGAC-AAAA-TACGACACGGGCCCTTTCTCTCGGG--GCTATTT-AA-CATTCGGTAGG-AAATGTGTAA-----GATCTCG-TCTATTTTGTATT-GGAGTGCT-GTTAACATTC-AGTCCCT-GTTATTTAAAA-AATAATTA-AT-CAAA-CG-CAAGA-TGTTTAC-TTANTGACTTGAATAAGATNA--CG-AATTN----A------TCGTT--A--CATTT-----------ACAT-GCC------------ACA--TTT--CTG-CATGA-CCGTA--T-TACTG-AGATGC-TC-GCCATTT-A-TTGCTATT-ATAA-ATTA----AAT---A-G-TT-TG-GTT---G-TAC-AAT--GTT-CCG---------------------TT-T---C--T---TT----TCGTTTC-GG--T-A------------T--------A---------------------G---GT-TT-C-GTTT-C-----G----------TTTC----GG----T----TT---C-GTTTCGCACTT
Reference ( family-74 ) : AAG-TTAACTTAG-ATCAT-A---ACGGG-----GGCAAT-GAGTTTCAGAAATTTCAAATGGA-AGGGNG--GGGNTGNGTCGTTACANGTCGGACGTCGGGCTGTTANAGNNCGGGACGNCAGNG------AGTAACTC-----CTANAGACAAATGCA-----ATTTGTGCATATTGT-T-G--TTT-A-CAAGATGGACTAAT--G-A-TTGGCGCAAAAGTTTATAGATA------TAGTAGTGTTGCTAAAACGCGGAACGGAAAA-CGGACGGGAAATTTAAG--AAT-TACATGT-TTAAA---AATCATGAAACC-CGGAGAAATTTAATTGNA--TTANAA-TCAAAA-TCGTAGGAATTTGTTCAC-AGCGGTAAAACAATTT-TATCTT---AAATTCT--ACAACAT-AAATTGATTAAGCTAAGTTGN--------ATGTCGGTCATGNA-ATTTCTCTGTACTAG-CGTTTTACAA-AAACTTTGCG-ATTTCATCTTTGACAGAGATGTTAGCG-AGCA--GAG-G-CAGAGA-ATTGAA--------G---GGGGGGAGAC-AAAA-TACGACACAGGCCCCTTCCCC---G--GCTATTT-AA-CATTCGGTAGG-AAATGTGTAA-----GATCTCG-TCTATTTTGTATT-GGAGTGCT-GTTAACATTC-AGTCCCT-GTTATTTAAAA-AATAATTA-AT-CAAA-CG-CAAGA-TGTTTAC-TTANTGACTTGAATAAGATNA--CG-AATTN----A------TCGTT--A--CATTT-----------ACAT-GCC------------ACA--TTT--CTG-CATGA-CCGTA--T-TACTG-AGATGC-TC-GCCATTT-A-TTGCTATT-ATAA-ATTA----AAT---A-G-TT-TG-GTT---G-TAC-AAT--GTT-CCG---------------------TT-T---C--T---CT----TTGTTTC-GG--T-A------------T--------A---------------------G---GT-TT-C-GTTT-C-----G----------TTTC----GG----T----TT---C-GTTTCGCACTT
gi|1 : -AATCG----A------TTATT--A--TCTTT-----------ATGT-GGC------------ACC--TTT--C-A-CAGGG-----------ATCG-AGATAT-T--ATCATTT-A-TTGATATT-AT-G-ATTA----AATATAA-A-CT-TG-GTT---G-TACAAATTGGTT-CTG---------------------TTAT---T--T---C------TGCTTC-AG--C-A---------------------A---------------------G---AT-TT-
gi|1 : acctgttagtgcgaaaacgaaaatannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaaAAGCTTGACTTAG-ATCATTA---ACGGC-----GGCAA--GAGTTTCAGAAATGTCAAATGCATAGGGAG--GGGGTAAGTCG-----GGTTGGA--TTGGGTTGTTATAGGTCGGGACGTCAGGG------A-TAACT---------AAGACAAATGCA-----ATTTGTTC-T-TTAT-T-A--CA--A-CAAGATG-ACTAATTGA-A-TTGGCGCAAAAGTT-ATAAATA------TAGTAATATTACTAAAACGTGGAAAATAAAATCCGATGAGAAATCTAAA--AAAATACATGTATTATA---AATCATGAAAAC-CGGAGAAATTTAATCGTAGTTTAAAAATCAAAAATAGTGGGAATTTGTTCAC-A-TGGTAAAACAATTTATATTTTTTAAAATTCTTTGTCACATTAAATTGATTAAGCTAAGTTGGTATGTAGAATGTTGGTTATATA-TTTTCTCTGTACAAGGTGTTTTACAA-AAACTTTGTA-ATT-CATCTTTGGCAGAGATGTTAGCGCAGCAAAGGG-G-CAGTGA-ATTGGA--------ATGCGAGGGGAGAC-AAAAATA----ATCGG-------------G--GTTATTT-AAACATTCGGTGGGGAAATGTTCAACTCTTGATCTTGGTCTATTTTGTATTTGAAGTGCTTGTCAA-ATTCCAGTCCCTTGTTATTTAAAACAATAATTA-AT-CAAG-CA-CAAG--TGTTT---TTACT--CT-------GATT----G-AATT-----A------TCGTT--A--TATTT-----------ACAT-GCC------------ACA--CTTTACTGATATGA-CCGTA--TCTACTG-AGATGC-TTTGCCATTT-A-TTGCTATTTATAA-ATTA----AAT---A-G-TT-TG-GTT---A-TAC-AAT--GTT-CCGCTCTCTTTATGTTTCGGTGGGTT-T---C--G---TT----TTGATTC-GG----A------------T--------A---------------------G---GT-TT-C-GTTT-C-----GT---------TTTC----TA----T----TT---C-GTTagggtaaatgatggggtcaccatttattacaatcaacagttagagaagaagaaaaccggtgtctgaagaaagtaaaaatatcacagaaaacagggcaaatcataaaaggagggggggtgggacacaaagtaaaaatcttaagcttgacttagatcattaacggcggcaagagtttcagaaatgtcaaatgcatagggagggggtaagtcgggttggattgggttgttataggtcgggacgtcagggataactaagacaaatgcaatttgttctttattacaacaagatgactaattgaattggcgcaaaagttataaatatagtaatattactaaaacgtggaaaataaaatccgatgagaaatctaaaaaaatacatgtattataaatcatgaaaaccggagaaatttaatcgtagtttaaaaatcaaaaatagtgggaatttgttcacatggtaaaacaatttatattttttaaaattctttgtcacattaaattgattaagctaagttggtatgtagaatgttggttatatattttctctgtacaaggtgttttacaaaaactttgtaattcatctttggcagagatgttagcgcagcaaaggggcagtgaattggaatgcgaggggagacaaaaataatcggggttatttaaacattcggtggggaaatgttcaactcttgatcttggtctattttgtatttgaagtgcttgtcaaattccagtcccttgttatttaaaacaataattaatcaagcacaagtgtttttactctgattgaattatcgttatatttacatgccacactttactgatatgaccgtatctactgagatgctttgccatttattgctatttataaattaaatagtttggttatacaatgttccgctctctttatgtttcggtgggtttcgttttgattcggataggtttcgtttcgttttctatttcgtt
gi|10 : acctgttagtgcgaaaacgaaaatannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaaaaatcttgctgaagcagaaataacagaaccaatttgtacaaccaagtttatatttaatcataatatcaataaatgataatatctcgatccctgtgaaaggtgccacataaagataataatcgattagggtaaatgatggggtcaccatttattacaatcaacagttagagaagaagaaaaccggtgtctgaagaaagtaaaaatatcacagaaaacagggcaaatcataaaaggagggggggtgggacacaaagtaaaaatctt-TAT-AAT--GGT-CTG---------------------CT-T---A--T---TT----TTGCTTC-GG--T-A------------T--------A---------------------A---ATATT-T-GCTT-G-----G----------TTTCGGTAGG----T----TT---C-ATTTCG
gi|10 : aatattacatgtataatcTA----AAT---A---TT-TG-CTT---G----------GTT-TCGGTAGG----------------TT-T---C--A---TT----TCGTTTC-GG--T-A------------T--------A---------------------G---GT-TT-C-GTTT-C-----G----------TTTCGGTGGG----T----TT---C-GTTTCGtttcggtataggtttcgtttcgtttcggtgggtttcgtttcgtttttatttcgtttcgcacttta
gi|10 : aatattacatgtataatctataatggtctgcttatttttgcttcggta-TT-TC-GTTTCGG-TAT-AG---GTT-TCG---------------------TT-T---C--------------GTTTC-GG--T-G-------------------------------------------G---GT-TT-C-GTTT-C-----G----------TTTT----TA----T----TT---C-GTTTCGCACTTtttttatttcgtttcgcacttta
gi|11 : aatattacatgtataatctataatggtctgcttatttttgcttcggtataaatatttgcttggtttcggtaggtttcaC-----CTACAAACAAATGTATGTATACATGCGCATACTGT-T-GATTTT-A-CAAAATGGACAAAT--G-A-TTGGGACAAATGTTTCTAGATATACATTTAGGAGTGTTGCTTCAATGTGG-ACGGGAAA-TAGAAGGGATATATAAG--AAT-Tta
gi|12 : AG-TTAATTTAGCATCAC-ATAAACGGG-----GGCAGT-GAGTTCCAGAAATTTCAAATGGA-AGGG-G--GGGTTGC----TTACATGTCGGACGTCAGGC-G--AAAACACGAAACAAC-GCG------AG
gi|13 : gggtgggggacccaacagtaaaaatcctT---G-TCC-AA---GTT-TCG---------------------TT-T---CAGTAGATT----TCGTTTC-AG--T-AGATTTCGTTCGGT--------A---------------------G---AT-TT-C-GTTT-C-----G----------TTTCAGTAGA----T----TT---C-GTTCCG
gi|15 : ttgttcacgactccgtgcaTTC-AG--T-G-------------------------------------------G---AT-TT-C-GTTT-C-----G----------TTTC----GG----TAGACTT---C-GTTTCGtttcgtttcgcaatttacagg
gi|15 : ---------------------TT-T---C--G---TT----TCGTTTC-GG--T-A------------G--------A---------------------CTTCGT-TT-C-GTTT-C-----GGCAGGTTTTGTTTC----GT----T----TT---C-GTTTCGCACTTtttcggcaggttttgtttcgttttcgtttcgcactttacagg
gi|16 : ttcagtggaAAATTTAAG--AAT-TACATGT----AATGTAATCAGGAAACC-CGGAGATATTTACTTGGA--TTAAAA-TCAAAA-TCGTAGGAATTTGtacagg
gi|18 : T----TTGTTTC-GG--T-A------------G--------A---------------------TTTTGT-TT-T-GTTT-C-----A----------TTTC----TA----T----TT---C-GTTTCGCACTT
gi|19 : acctgtaA-ATTA----AAT---A-G-TT-TG-GTT---G-TAC-AAT--GTT-ACG---------------------TT-T---C--T---CTTTAATTGTTTC-GG--T-A------------T--------AG--------------------G---GT-TT-C-GTTT-C-----acaaaatacaccgaaacgaa
gi|2 : AAG-TTAACTTAG-ATCAT-A---ACGGG-----GGCAAC-AAGTTTAAAAAATTTCAGATGGG-AGGGGGTTGGGTTGTGTTGTTACAGGTCGGACATCAGG--G--ATAACTCGAAACAACGGGAGGTTTCAGTATTTCTTGCCCTGAAGACAAATGTA--------TGTGCATATTGTAT-G--TTTTA-CAAGATAGACTAAT--G-AATTGGTGCAAAAGTTTATGAATA------TAGTAGTGTTACTAAAACGTGGAAAAGAAAA-CCGATGAGAAATTTAAG--AAC-TACATGT-TTAAG---AATCATGAAACC-TGGAGAAA---AATTGGA--TTAAAA-TCAAAA-TTGTAGGAATTTGTTCAC-ATCGGTAAAACAATTT-TGTCTT---AAATTCT--ACAACAT-AAATTGATTAAACGAAGTTGT--------ATGTTAGT-ATGAA-ATTTCTCTGTGCTAG-TGTTTTACAA-AAACCTTGTA-ATTTCATCTTTGGCAGAGGTGTTAGTG-AGCA--GAG-GACAGAGA-ATTGAA--------G---GGGGGGGGAC-AAAA-TACGACA-----------------G--GCTACTT-AA-CATTCAGTAGG-AAGTGTGTAA-----GATCTCG-TCTATTTTGTATT-GGAGTGCT-GTTAACAACC-AGTTTCT-GTTATTTAAAA-AATAATTA-AT-CGAA-CA-CAAGA-TGTTTAC-TTACTGACTTGAATGAGATCA--CG-AATTT----A------TCGTT--A--CATTT-----------ACAT-GCC------------ACA--TTT--CTG-CATGA-CTGTA--T-TACTG-AGATGC-AC-GCCATTT-A-TTGCTATT-ATGA-ATTA----AAT---A-G-TT-TG-GTT---G-TAC-AAT--GTT-CCG---------------------TT-T---C--T---CT----TTGCTTC-GG--T-A------------TA-------A---------------------G---GT-TT-C-GTTT-C-----G----------TTTT----GA----T----TT---C-GTTTCGCACTTaat
gi|21 : ---GT-TT-C-GTTT-C-----G----------TTTC----GA----T----TT---A-GTTTTGCACTT
gi|22 : --T-TACTG-AGTTGC-TC-GCCATTT-A-TTGCTATT-ACAA-ATTA----AAtacaggta
gi|3 : GTGTATATTGT-TTG--TTT-AATAAGATACACTAAT--GCA-TTGGCGCAAAAGTTTATAGATA------TATTAGTTTTGCTAAAACGTGGAAAAGAAAA-CGGACGGGAAATTTAAG--AAT-TACATGT-ATTAT---AATCAT-----------------TAATTGGG--TCATAT-TCAAAA-TTGTAGGAATTTGTTCAC-AGCGGTAAAACAATTT-TACCTT---AAATTCT--ACAGCAT-AAATTGATTAAGCTAAGTTGA--------ATGTTGGTAA--AACATTTCTC---------------ACAACAAACTT-GCA-ATTTCACCATTGACAGAGATGTTAGCG-ATCA--GA----CAGAGTTATTGAA--------G---GGGGG-------AAA-T-CGACACAGACCCTTTTCTC---GTGGCTATTTTAA-CATTCAGTACG-AAGTGTGTAA-----GATCTCG-TTGATTTTGTATT-GGAGTGCT-GTTAACAATC-AG-----------TTAAAA-AATTATCA-AT-CAAA-CA-CAAGATTTTTTAC-TTATTGACTTGAATAAGATAA--TG-AA-TA----A------TCGTA--A--CATTT-----------ACA----------------------------TG-TATGA-CCGTT--T-TACTG-AGATGC-TC-G-CATTT-A-TTGCTATT-ATGA-ATTA----AAT---A-A-TT-TG-GTT---G-TAC-AAT--GTC-CAG---------------------AT-T---C--T---TT----ATGTTTC-TG--C-A------------TC-------A---------------------G---GT-TT-G-GTTT-C-----G----------GCT-----GG----T----TT---C-GTTTCG
gi|3 : T--GTT-TCA---------------------TT-T---C--G---TT----TCGTTTC-AG--T-A------------G--------A----------------------------------TTT-C-----G----------TTTC----GA----T----TT---TGGTTTCGCACTTtttaagtggatttcgtttcgtttttggtgtgtttcatttcgtttcgtttcagtagatttcgtttcgattttggtttcgcactttactgg
gi|4 : gtgtatattgtttgtttaataagatacactaatgcattggcgcaaaagtttatagatatattagttttgctaaaacgtggaaaagaaaacggacgggaaatttaagaattacatgtattataatcattaattgggtcatattcaaaattgtaggaatttgttcacagcggtaaaacaattttaccttaaattctacagcataaattgattaagctaagttgaatgttggtaaaacatttctcacaacaaacttgcaatttcaccattgacagagatgttagcgatcagacagagttattgaaggggggaaatcgacacagacccttttctcgtggctattttaacattcagtacgaagtgtgtaagatctcgttgattttgtattggagtgctgttaacaatcagttaaaaaattatcaatcaaacacaagattttttacttattgacttgaataagataatgaataatcgtaacatttacatgtatgaccgttttactgagatgctcgcatttattgctattatgaattaaataatttggttgtacaatgtccagattctttatgtttctgcatcaggtttggtttcggctggtttcgtttcgtttaagtggatttcgtttcgtttttggtgAATTTT--ACAACAT-AAATTGATTAAGCTAAGCTGG--------ATGTTGGT-ATGAA-ATCTCTTTGTACTAG-TGTTTTACAA-AAA--------------TCTTTGACAGAGGTGTTAGCT-AGCA--GAGTG-CAGACA-ATTGAAATGGGGGGG---AGGGGGAGACTAAAA-TATGACACAAGCCCCTTCTCTCGGG--GCTATTT-AA-CATTCGGTAGG-AAATGTGTAA-----GATCTAG-TCTATTTTGTATT-GGAGTGCT-GTTAACATTC-AGTCCCT-GTTATTCAAAA-AATAATTA-AT-CAAA-CG-CAAGA-TGTTTAC-TTATTGACTTAAATAAGATCA--CG-AA-TG----G------TCGTT--A--TA-TT-----------ACATCGCC------------ACAACTTC--CTG-TATGA-ACGTA--T-AACTG-AG-TGCTTC-GCCA-TT-A-TTG-TATT-ATAA---TA----AAT---A-G-TT----GTT---GCCAC-AAT--GTT--CG----------------------T-T---C--T---CT----TTGTTTT-CGTCT-A------------TTTTTATAAA---------------------G---GT-TC-C-GTTTAC-----G----------GTTA----GG----T----TT---C-GTTTtactgg
gi|5 : A-AATAATTATATGCAAATCA-CAAGA-TGTTTAC-GTAGTGACTT-AATAAGATGAACCGTAATTACTGAG------TTGTT--CGCCATTT-----------AATT-GCTTGATAACATTAAATA--TTT--CTG-CTTG---------T-TAT----AATGT-TC--CCGTTC---TTACTATT-TT----TTTCGGTAAT---A-GGTT-TGCGTT-----T-C-GATAGGTT-TCA---------------------TT-T---C--------------GTTTC-GG--T-A------------T--------AGGCTTCGTTTCATTTCTGGTGG---GT-TT-CCGTTT-C-----G----------CTTC----GG----TGGGATT---C-GTTTCGgtttcgtgtggggttcgtttcgtattggtgggtgttgttatcgatttcggtagaatttcgttcgttcagtttttcgattgtcgcgcacattttacag
gi|5 : ATGAACCGTAA-T-TACTG-AGTTGT-TC-GCCATTTAA-TTGCT-TG-ATAACATTA----AAT---A-T-TTCTG-CTT---GTTAT-AAT--GTTCCCG---------------------TT-CTTAC--T---AT----TTTTTTC-GG--TAA------------T--------A---------------------G---GT-TTGC-GTTT-CGATAGG----------TTTC-----A----T----TT---C-GTTTCGggtagatttcgtttcggttttctatttcgtatgcaaactcttacaagt
gi|6 : aaataattatatgcaaatcacaagatgtttacgtagtgacttaataagAA-AATAATTA-TT-CAAA-CATCCAGA-TGTTTAC-GTAGTGACTT-AATAAGATGAC-CGTAATTC----ACTGCAGTTGTTCGC--CATTTAATTGGCTATAACAT-TAA------------ATA--TTT--CTG-CTT-----GTA--T--------AATGT-T---CCGTTT-T-TCTATATT-GT----TTCGGT-AAT---AGG-TT-TGCGTT-----T-C-GATAGGTT-TCA---------------------TT-T---C--------------GTTTCGGG--T-A------------T--------A---------------------G---GC-TT-C-GTTT-CA----A----------TTTC----GG----TGGG-TTTCCC-GTTTCGCgtataggcttcgtttcatttctggtgggtttccgtttcgcttcggtgggattcgtttcgggtagatttcgtttcggttttctatttcgtatgcaaactcttacaagt
gi|6 : ATGA-CCGTAATT-CACTGCAGTTGT-TC-GCCATTT-AATTG--GCT-ATAACATTA----AAT---A-T-TTCTG-CTT---G-TAT-AAT--GTT-CCG---------------------TT-T---T--T---CTATA-TTGTTTC-GG--TAA------------T--------A---------------------G---GT-TTGC-GTTT-CGATAGG----------TTTC-----A----T----TT---C-GTTTCGttcggctgggatttcgtttcggggtagatttcgtttcgtttctatttcgttgcacactttacaag
gi|6 : aaaataattattcaaacatccagatgtttacgtagtgacttaataagT----TCGTTTC-GG--G-G------------T--------A---------------------G---AT-TT-C-GTTT-C-----G----------TTTC----TA----T----TT---C-GTTGCACACTTggtataggcttcgtttcaatttcggtgggtttcccgtttcgcttcggctgggatttcgtttcggggtagatttcgtttcgtttctatttcgttgcacactttacaag
gi|7 : aaaataattattcaaacatccagatgtttacgtagtgacttaataagatgaccgtaattcactgcagttgttcgccatttaattggctataacattaaatatttctgcttgtataatgttccgtttttctatattgtttcggtaataggtttgcgtttcgataggtttcatttcgtttcgggtataggcttcgtttcaatttcggtgggtttcccgtttcgcttcggctgggatTGTTGCTAAAACGCAGAGCGGAAAA-CGGAATGGAAA-TTAAGGTAAA-TGTATAG-TTAAA---TACCA-AAAACCGTGAAAAAAGT--GTTTTA--TTTTAA-TCAAAA-TCCT---AATTACTTTACAAGCGGTGAAACAATTG-TGTCT------GTTC---------T-AGGTTGATTAATCC---TCG----------TGTCAGTCATGTG-ATGTC-----A-TAG-CATTTTAAAA-AAACTTTGCGCATTTTATtacaag
gi|8 : -AAAA-TACGACACGGGTCCTTTCTCTCGGG--GCTATTT-AA-CATTCAGTAGG-AAATGTGTAA-----GATCCCG-TCTATTTTGTATT-GGAGTGCT-GTTAACATTC-ATTCTCT-GTTAGTTAAAA-AATAATTA-AT-CAAA-CG-CAAGA-TGTTTACATTAATGAC-TGAATA--ATCA--CG-AATTA----A------TCGTT--A--CATTT-----------ACAT-GCC------------ACA--
gi|9 : aca---------------------TT-T---C--G---TT----TCGTTTT-GG--T-A-------------------------------------------G---AT-TT-C-GCTT-C-----G----------TTTC----TA----T----TT---C-GTTTCGCACTTc
gi|9 : cctgtaG---------------------TT-T---C--G---TT----TCATTTC-GG--T-A-------------------------------------------G---AT-TT-C-GTTT-C-----G----------TTTT----GGTAGAT----TT---C-GCTTCGtctaccgaaatgaaacgaaacccaccgaaacgaaacgaaacctaaaagcacaaggtaaaaatcttaagttaacttagatcataatgggacaggggcaattgagtttcagaaatttcagatgggagggtgt
gi|9 : cctgtaaagtgcgaaacgaaatagaaaG---------------------TT-T---C--G---TT----TCGTTTC-GG--T-G-------------------------------------------G---GT-TT-C-GTTT-C-----A----------TTTC----GGTAGAT----TT---C-GTTTCGccaccgaaacgaaacgaaacctaaaagcacaaggtaaaaatcttaagttaacttagatcataatgggacaggggcaattgagtttcagaaatttcagatgggagggtgt
gi|9 : cctgtaaagtgcgaaacgaaatagaaacgaagcgaaatctaccaaaaAAG-TTAACTTAG-ATCAT-A---ATGGGACAGGGGCAATTGAGTTTCAGAAATTTCAGATGGG-AGGGTG--ctaaaagcacaaggtaaaaatcttaagttaacttagatcataatgggacaggggcaattgagtttcagaaatttcagatgggagggtgt
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|14 ): CTTAAAGTGCGAAACGAAAACGAAACAAAAACCTGCCGAACGAAACGAAGTCTACCGCGAAACGAAACGAAATCCACTGAAA
Unaligned ( gi|17 ): GTGGGTTTCGGGATTTCGGTTAGATTTCGGTTGTTTCGTTTCGTGTTTCGTTTCGATTTTCGATTCTTTCGCACTTACA
Unaligned ( gi|20 ): GTAAATTTCGTTTCATTTCGGTAGATTGCGTTTCGTTTTGCATTTTACAGGTAC
Alignments
lowQualScore : 1 1 11111 22222 22 1 1111 111111 11 33333 7777777777777777777777 55555555 222222 33333333 111111 222222 222222222 11 222222 11 1 1 2222 111 333333333 1 1111111111 1 11 1111 1 444444444444 333333333333 22222 1 11 1 222222222222 11111 2222222222222222222222222222222 111 1111 11111111111111111111111111111 2222222222222222222 1111111111111111 2222222222222222222222222222
lowQualScore : 0 0 88888 55555 00 0 4444 888888 00 0 33333 0 6666666666666666666666 77777777 33 0 0 111111 99999999 8 888888 0 3 888888 0 0 8 3 1 99 77 000000000 00 5 8 1 333333 11 11 8 8 1 3 0 8 0 0000 111 0 8 0 777777777 6 1 0 4444444444 8 88888 5 0 33 8888 0 777777777777 33 8 11 666666666666 8 8 8 00000 8 8 8 1 8 0 1 8 0 5 5 5 5 77 5 5 1 0 1 1 33 0 3 555555555555 00000 7777777777777777777777777777777 66 77 5 999999999 66 4 3 4 55 666 5 4 222 2222 666 999 7 7 6 2 3 99 2 44444 3 99999999999999999999999999999 3333 1 3333333333333333333 1 555 1 3 1 1111111111111111 5555555555555555555555555555 6666 444
lowQualScore : . . ..... ..... .. . .... ...... .. . ..... . ...................... ........ .. . . ...... ........ . ...... . . ...... . . . . . .. .. ......... .. . . . ...... .. .. . . . . . . . .... ... . . . ......... . . . .......... . ..... . . .. .... . ............ .. . .. ............ . . . ..... . . . . . . . . . . . . . .. . . . . . . .. . . ............ ..... ............................... .. .. . ......... .. . . . .. ... . . ... .... ... ... . . . . . .. . ..... . ............................. .... . ................... . ... . . . ................ ............................ .... ...
lowQualScore : 0 0 55555 00000 55 0 5555 777777 33 7 77777 7 5555555555555555555555 77777777 22 2 8 000000 88888888 8 888888 2 2 888888 8 6 0 2 0 22 77 222222222 66 0 0 0 222222 00 88 0 0 4 8 0 8 0 8888 888 6 0 8 222222222 0 4 8 4444444444 0 88888 6 0 88 8888 0 888888888888 22 0 66 444444444444 0 0 0 00000 0 0 0 4 0 8 4 0 6 7 7 7 7 11 7 7 0 1 4 0 66 0 2 666666666666 88888 6666666666666666666666666666666 99 99 7 888888888 44 0 7 0 66 555 0 0 777 9999 444 333 3 3 2 2 1 66 4 33333 5 44444444444444444444444444444 5555 6 2222222222222222222 6 444 5 1 6 2222222222222222 5555555555555555555555555555 5555 666
consensus : AAG-TTAACTTAG-ATCAT-A---ACGGG-----GGCAAC-GAGTTTCAGAAATTTCAGATGGG-AGGGNG--GGGTTGCGTCGTTACAGGTCGGACGTCGGGC-G--ATAACTCGAAACGACGGGGGGTTTCAGTANCTC-----CTGAAGACAAATGTA-----AC-TGCGCATATTGT-T-G--TTT-A------CAAGATGGACTAAT--G-A-TTGGCGCAAAAGTTTATAGATA------TAGTAGTGTTGCTAAAACGTGGAAAAGAAAA-CGGANGGGAAATTTAAG--AAN-TACATGT-TTAAA---AATCATGAAANCCG-GAGAAA----TTTAATTGGA--TTAAAA-TCAAAA-TCGTAGGAATTTGTTCAC-AGCGGTAAAACAATTT-TGTCTT---AAATTCT--ACAACAT-AAATTGATTAAGCTAAGTTGG--------ATGTTGGT-ATGAAATTTCTCTGTACTAG-CGTTTTACAA-AAACTTTGCA-ATTTCATCTTTGGCAGAGGTGTTAGCG-AGCA--GAG-G-CAGAGA-ATTGAA--------G---GGGGGGAGAC-AAAATACGACACGGGCCCTTTCTCTCGGGGCTATTT-AA-CATTCGGTAGG-AAATGTGTAA-----GATCTCG-TCTATTTTGTATT-GGAGTGCT-GTTAACATTC-AGTCCCT-GTTATTTAAAA-AATAATTA-AT-CAAA-CG-CAAGA-TGTTTAC-TTANTGACTTGAATAAGATNA--CG-AATTN----A------TCGTT--A--CATTT-----------ACAT-GCC------------ACA--TTT--CTG-CATGA-CCGTA--T-TACTG-AGATGC-TC-GCCATTT-A-TTGCTATT-ATAA-ATTA----AAT---A-G-TT-TG-GTTG-TAC-AAT--GTTCCG-----TT-TC----N---T----T---------------TCG----TTTC-GGT----A------------T-A-G---GT-TT-CGTTT-C-----G----------TT---------------TC-----GG----T----TT---CGTTTCGCACTT
Reference ( family-74 ) : AAG-TTAACTTAG-ATCAT-A---ACGGG-----GGCAAC-GAGTTTCAGAAATTTCAGATGGG-AGGGNG--GGGTTGCGTCGTTACAGGTCGGACGTCGGGC-G--ATAACTCGAAACGACGGGG------AGTANCTC-----CTGAAGACAAATGTA-----AC-TGTGCATATTGT-T-G--TTT-A------CAAGATGGACTAAT--G-A-TTGGCGCAAAAGTTTATAGATA------TAGTAGTGTTGCTAAAACGTGGAAAAGAAAA-CGGANGGGAAATTTAAG--AAN-TACATGT-TTAAA---AATCATGAAACCCG-GAGAAA----TTTAATTGGA--TTAAAA-TCAAAA-TCGTAGGAATTTGTTCAC-AGCGGTAAAACAATTT-TGTCTT---AAATTCT--ACAACAT-AAATTGATTAAGCTAAGTTGG--------ATGTTGGT-ATGAAATTTCTCTGTACTAG-CGTTTTACAA-AAACTTTGCA-ATTTCATCTTTGGCAGAGGTGTTAGCG-AGCA--GAG-G-CAGAGA-ATTGAA--------G---GGGGGGAGAC-AAAATACGACACGGGCCCTTTCTCTCGGGGCTATTT-AA-CATTCGGTAGG-AAATGTGTAA-----GATCTCG-TCTATTTTGTATT-GGAGTGCT-GTTAACATTC-AGTCCCT-GTTATTTAAAA-AATAATTA-AT-CAAA-CG-CAAGA-TGTTTAC-TTANTGACTTGAATAAGATNA--CG-AATTN----A------TCGTT--A--CATTT-----------ACAT-GCC------------ACA--TTT--CTG-CATGA-CCGTA--T-TACTG-AGATGC-TC-GCCATTT-A-TTGCTATT-ATAA-ATTA----AAT---A-G-TT-TG-GTTG-TAC-AAT--GTTCCG-----TT-TC----T---T----T---------------TCG----TTTC-GGT----A------------T-A-G---GT-TT-CGTTT-C-----G----------TT---------------TC-----GG----T----TT---CGTTTCGCACTT
gi|1 : -AATCG----A------TTATT--A--TCTTT-----------ATGT-GGC------------ACC--TTT--C-A-CAGGG-----------ATCG-AGATAT-T--ATCATTT-A-TTGATATT-AT-G-ATTA----AATATAA-A-CT-TG-GTTG-TACAAATTGGTTCTG------T-TA----T---T----T---------------CTG----CTTC-AGC----A--------------A-G---AT-TT-
gi|1 : acctgttagtgcgaaaacgaaaatannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaaAAGCTTGACTTAG-ATCATTA---ACGGC-----GGCAA--GAGTTTCAGAAATGTCAAATGCATAGGGAG--GGGGTAAGTCG-----GGTTGGA--TTGGGTTGTTATAGGTCGGGACGTCAGGG------A-TAACT---------AAGACAAATGCA-----AT-T--------TGT-T-C--TTT-ATTACAACAAGATG-ACTAATTGA-A-TTGGCGCAAAAGTT-ATAAATA------TAGTAATATTACTAAAACGTGGAAAATAAAATCCGATGAGAAATCTAAA--AAAATACATGTATTATA---AATCATGAAAACCG-GAGAAA----TTTAATCGTAGTTTAAAAATCAAAAATAGTGGGAATTTGTTCAC-A-TGGTAAAACAATTTATATTTTTTAAAATTCTTTGTCACATTAAATTGATTAAGCTAAGTTGGTATGTAGAATGTTGGTTATATATTTTCTCTGTACAAGGTGTTTTACAA-AAACTTTGTA-ATT-CATCTTTGGCAGAGATGTTAGCGCAGCAAAGGG-G-CAGTGA-ATTGGA--------ATGCGAGGGGAGAC-AAAA-ATAA---------------TCGGGGTTATTT-AAACATTCGGTGGGGAAATGTTCAACTCTTGATCTTGGTCTATTTTGTATTTGAAGTGCTTGTCAA-ATTCCAGTCCCTTGTTATTTAAAACAATAATTA-AT-CAAG-CA-CAAG--TGTTT---TTACT--CT-------GATT----G-AATT-----A------TCGTT--A--TATTT-----------ACAT-GCC------------ACA--CTTTACTGATATGA-CCGTA--TCTACTG-AGATGC-TTTGCCATTT-A-TTGCTATTTATAA-ATTA----AAT---A-G-TT-TG-GTTA-TAC-AAT--GTTCCG-----CTCTC----T---T----TATGTTTCGGTGGGTTTCG----TTTT-GATTCGGA------------T-A-G---GT-TT-CGTTT-C-----GT---------TT---------------TC-----TA----T----TT---CGTTagggtaaatgatggggtcaccatttattacaatcaacagttagagaagaagaaaaccggtgtctgaagaaagtaaaaatatcacagaaaacagggcaaatcataaaaggagggggggtgggacacaaagtaaaaatcttaagcttgacttagatcattaacggcggcaagagtttcagaaatgtcaaatgcatagggagggggtaagtcgggttggattgggttgttataggtcgggacgtcagggataactaagacaaatgcaatttgttctttattacaacaagatgactaattgaattggcgcaaaagttataaatatagtaatattactaaaacgtggaaaataaaatccgatgagaaatctaaaaaaatacatgtattataaatcatgaaaaccggagaaatttaatcgtagtttaaaaatcaaaaatagtgggaatttgttcacatggtaaaacaatttatattttttaaaattctttgtcacattaaattgattaagctaagttggtatgtagaatgttggttatatattttctctgtacaaggtgttttacaaaaactttgtaattcatctttggcagagatgttagcgcagcaaaggggcagtgaattggaatgcgaggggagacaaaaataatcggggttatttaaacattcggtggggaaatgttcaactcttgatcttggtctattttgtatttgaagtgcttgtcaaattccagtcccttgttatttaaaacaataattaatcaagcacaagtgtttttactctgattgaattatcgttatatttacatgccacactttactgatatgaccgtatctactgagatgctttgccatttattgctatttataaattaaatagtttggttatacaatgttccgctctctttatgtttcggtgggtttcgttttgattcggataggtttcgtttcgttttctatttcgtt
gi|10 : acctgttagtgcgaaaacgaaaatannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaaaaatcttgctgaagcagaaataacagaaccaatttgtacaaccaagtttatatttaatcataatatcaataaatgataatatctcgatccctgtgaaaggtgccacataaagataataatcgattagggtaaatgatggggtcaccatttattacaatcaacagttagagaagaagaaaaccggtgtctgaagaaagtaaaaatatcacagaaaacagggcaaatcataaaaggagggggggtgggacacaaagtaaaaatctt-TAT-AAT--GGTCTG-----CT-TA----T---T----T---------------TTG----CTTC-GGT----A------------T-A-A---ATATT-TGCTT-G-----G----------TT---------------TCGGTA-GG----T----TT---CATTTCG
gi|10 : aatattacatgtataatcTA----AAT---A---TT-TG-CTTG----------GTTTCGGTAGGTT-TC----A---T----T---------------TCG----TTTC-GGT----A------------T-A-G---GT-TT-CGTTT-C-----G----------TT---------------TCGGTG-GG----T----TT---CGTTTCGtttcggtataggtttcgtttcgtttcggtgggtttcgtttcgtttttatttcgtttcgcacttta
gi|10 : aatattacatgtataatctataatggtctgcttatttttgcttcggtaG-----TT-TC----G---T----T---------------TCG----TTTC-GGT----G----------------G---GT-TT-CGTTT-C-----G----------TT---------------TT-----TA----T----TT---CGTTTCGCACTTtttttatttcgtttcgcacttta
gi|11 : aatattacatgtataatctataatggtctgcttatttttgcttcggtataaatatttgcttggtttcggtaggtttcatttcgtttcggtatagC-----CTACAAACAAATGTATGTATACATGCGCATACTGT-T-GATTTT-A------CAAAATGGACAAAT--G-A-TTGGGACAAATGTTTCTAGATATACATTTAGGAGTGTTGCTTCAATGTGG-ACGGGAAA-TAGAAGGGATATATAAG--AAT-Tta
gi|12 : AG-TTAATTTAGCATCAC-ATAAACGGG-----GGCAGT-GAGTTCCAGAAATTTCAAATGGA-AGGG-G--GGGTTGC----TTACATGTCGGACGTCAGGC-G--AAAACACGAAACAACG
gi|13 : gggtgggggacccaacagtaaaaatcctTG-TCC-AA---GTTTCG-----TT-TCAG--TAGAT----T---------------TCG----TTTC-AGT----AGATTTCGTTCGGT-A-G---AT-TT-CGTTT-C-----G----------TT---------------TCAGTA-GA----T----TT---CGTTCCGcgag
gi|13 : ttgttcacgactccgtgca-----TT-TC----G---T----T---------------TCG----TTTC-AGT----A----------------G---AT-TT-CGTTC-C-----G----------TT---------------TC------G----T----TT---CGtttcgtttcgcaatttacagg
gi|14 : ttgttcacgactccgtgcatgtccaagtttcgtttcagtagatttcgtttcagtagatttcgttcggtaga-----TT-TC----G---T----T---------------TCG----TTTC-GCG----G------------T-A-G---AC-TT-CGTTT-C-----G----------TTCGGCAGGTTTTTGTTTC-----GT----T----TT---CGTTTCGCACTTcaatttacagg
gi|15 : cttaTTC-AGT----G----------------G---AT-TT-CGTTT-C-----G----------TT---------------TC-----GG----TAGACTT---CGTTTCGtccactgaaa
gi|15 : -----TT-TC----G---T----T---------------TCG----TTTC-GGT----A------------G-A-CTTCGT-TT-CGTTT-C-----GGCAGGTTTTGTT---------------TC-----GT----T----TT---CGTTTCGCACTTtttcggcaggttttgtttcgttttcgtttcgcactttacagg
gi|16 : ttcagtggaAAATTTAAG--AAT-TACATGT----AATGTAATCAGGAAACCCG-GAGATA----TTTACTTGGA--TTAAAA-TCAAAA-TCGTAGGAATTTGtacagg
gi|18 : -----TT-TT----G---T----T---------------TTG----TTTC-GGT----A------------G-A-TTTTGT-TT-TGTTT-C-----A----------TT---------------TC-----TA----T----TT---CGTTTCGCACTT
gi|19 : acctgtaA-ATTA----AAT---A-G-TT-TG-GTTG-TAC-AAT--GTTACG-----TT-TC----T---C----TTTAA-----------TTG----TTTC-GGT----A------------T-AGG---GT-TT-CGTTT-C-----tacaccgaaacgaa
gi|2 : AAG-TTAACTTAG-ATCAT-A---ACGGG-----GGCAAC-AAGTTTAAAAAATTTCAGATGGG-AGGGGGTTGGGTTGTGTTGTTACAGGTCGGACATCAGG--G--ATAACTCGAAACAACGGGAGGTTTCAGTATTTCTTGCCCTGAAGACAAATGTA--------TGTGCATATTGTAT-G--TTTTA------CAAGATAGACTAAT--G-AATTGGTGCAAAAGTTTATGAATA------TAGTAGTGTTACTAAAACGTGGAAAAGAAAA-CCGATGAGAAATTTAAG--AAC-TACATGT-TTAAG---AATCATGAAACCTG-GAGAAA-------AATTGGA--TTAAAA-TCAAAA-TTGTAGGAATTTGTTCAC-ATCGGTAAAACAATTT-TGTCTT---AAATTCT--ACAACAT-AAATTGATTAAACGAAGTTGT--------ATGTTAGT-ATGAAATTTCTCTGTGCTAG-TGTTTTACAA-AAACCTTGTA-ATTTCATCTTTGGCAGAGGTGTTAGTG-AGCA--GAG-GACAGAGA-ATTGAA--------G---GGGGGGGGAC-AAAATACGACA-----------------GGCTACTT-AA-CATTCAGTAGG-AAGTGTGTAA-----GATCTCG-TCTATTTTGTATT-GGAGTGCT-GTTAACAACC-AGTTTCT-GTTATTTAAAA-AATAATTA-AT-CGAA-CA-CAAGA-TGTTTAC-TTACTGACTTGAATGAGATCA--CG-AATTT----A------TCGTT--A--CATTT-----------ACAT-GCC------------ACA--TTT--CTG-CATGA-CTGTA--T-TACTG-AGATGC-AC-GCCATTT-A-TTGCTATT-ATGA-ATTA----AAT---A-G-TT-TG-GTTG-TAC-AAT--GTTCCG-----TT-TC----T---C----T---------------TTG----CTTC-GGT----A------------TAA-G---GT-TT-CGTTT-C-----G----------TT---------------TT-----GA----T----TT---CGTTTCGCACTTaat
gi|21 : ---GT-TT-CGTTT-C-----G----------TT---------------TC-----GA----T----TT---AGTTTTGCACTT
gi|22 : --T-TACTG-AGTTGC-TC-GCCATTT-A-TTGCTATT-ACAA-ATTA----AAtacaggta
gi|3 : GTGTATATTGT-TTG--TTT-AA-----TAAGATACACTAAT--GCA-TTGGCGCAAAAGTTTATAGATA------TATTAGTTTTGCTAAAACGTGGAAAAGAAAA-CGGACGGGAAATTTAAG--AAT-TACATGT-ATTAT---AATCAT---------------------TAATTGGG--TCATAT-TCAAAA-TTGTAGGAATTTGTTCAC-AGCGGTAAAACAATTT-TACCTT---AAATTCT--ACAGCAT-AAATTGATTAAGCTAAGTTGA--------ATGTTGGT-AAAACATTTCTC---------------ACAACAAACTT-GCA-ATTTCACCATTGACAGAGATGTTAGCG-ATCA--GA----CAGAGTTATTGAA--------G---GGGGG-------AAAT-CGACACAGACCCTTT-TCTCGTGGCTATTTTAA-CATTCAGTACG-AAGTGTGTAA-----GATCTCG-TTGATTTTGTATT-GGAGTGCT-GTTAACAATC-AG-----------TTAAAA-AATTATCA-AT-CAAA-CA-CAAGATTTTTTAC-TTATTGACTTGAATAAGATAA--TG-AA-TA----A------TCGTA--A--CATTT-----------ACA----------------------------TG-TATGA-CCGTT--T-TACTG-AGATGC-TC-G-CATTT-A-TTGCTATT-ATGA-ATTA----AAT---A-A-TT-TG-GTTG-TAC-AAT--GTCCAG-----AT-TC----T---T----T---------------ATG----TTTC-TGC----A------------TCA-G---GT-TT-GGTTT-C-----G----------GC---------------T------GG----T----TT---CGTTTCG
gi|3 : T--GTTTCA-----TT-TC----G---T----T---------------TCG----TTTC-AG------------------T-A-G---AT-TT-CGTTT-C-----G----------AT----------------------------T----TT---GGTTTCGCACTTtttaagtggatttcgtttcgtttttggtgtgtttcatttcgtttcgtttcagtagatttcgtttcgattttggtttcgcactttactgg
gi|4 : gtgtatattgtttgtttaataagatacactaatgcattggcgcaaaagtttatagatatattagttttgctaaaacgtggaaaagaaaacggacgggaaatttaagaattacatgtattataatcattaattgggtcatattcaaaattgtaggaatttgttcacagcggtaaaacaattttaccttaaattctacagcataaattgattaagctaagttgaatgttggtaaaacatttctcacaacaaacttgcaatttcaccattgacagagatgttagcgatcagacagagttattgaaggggggaaatcgacacagacccttttctcgtggctattttaacattcagtacgaagtgtgtaagatctcgttgattttgtattggagtgctgttaacaatcagttaaaaaattatcaatcaaacacaagattttttacttattgacttgaataagataatgaataatcgtaacatttacatgtatgaccgttttactgagatgctcgcatttattgctattatgaattaaataatttggttgtacaatgtccagattctttatgtttctgcatcaggtttggtttcggctggtttcgtttcgtttaagtggatttcgtttcgtttttggtgAATTTT--ACAACAT-AAATTGATTAAGCTAAGCTGG--------ATGTTGGT-ATGAAATCTCTTTGTACTAG-TGTTTTACAA-AAA--------------TCTTTGACAGAGGTGTTAGCT-AGCA--GAGTG-CAGACA-ATTGAAATGGGGGGG---AGGGGGAGACTAAAATATGACACAAGCCCCTTCTCTCGGGGCTATTT-AA-CATTCGGTAGG-AAATGTGTAA-----GATCTAG-TCTATTTTGTATT-GGAGTGCT-GTTAACATTC-AGTCCCT-GTTATTCAAAA-AATAATTA-AT-CAAA-CG-CAAGA-TGTTTAC-TTATTGACTTAAATAAGATCA--CG-AA-TG----G------TCGTT--A--TA-TT-----------ACATCGCC------------ACAACTTC--CTG-TATGA-ACGTA--T-AACTG-AG-TGCTTC-GCCA-TT-A-TTG-TATT-ATAA---TA----AAT---A-G-TT----GTTGCCAC-AAT--GTT-CG-----TTCTCTTTGT---T----T---------------TCGTCTATTTT-TAT----A------------A-A-G---GT-TC-CGTTTAC-----G----------GT---------------TA-----GG----T----TT---CGTTTtactgg
gi|5 : A-AATAATTATATGCAAATCA-CAAGA-TGTTTAC-GTAGTGACTT-AATAAGATGAACCGTAATTACTGAG------TTGTT--CGCCATTT-----------AATT-GCTTGATAACATTAAATA--TTT--CTG-CTTG---------T-TAT----AATGT-TC--CCGTTC---TTACTATT-TT----TTTCGGTAAT---A-GGTT-TGCGTT--T-C-GATA-G----G-----TT-TC----A---T----T---------------TCG----TTTC-GGT----A------------T-A-G---GC-TT-CGTTT-C-----A----------TT---------------TCTGGTGGG----T----TTC--CGTTTCGCgtttcgtgtggggttcgtttcgtattggtgggtgttgttatcgatttcggtagaatttcgttcgttcagtttttcgattgtcgcgcacattttacag
gi|5 : ATGAACCGTAA-T-TACTG-AGTTGT-TC-GCCATTTAA-TTGCT-TG-ATAACATTA----AAT---A-T-TTCTG-CTTGTTAT-AAT--GTTCCC-----GT-TC----T---TACTAT---------------TTT----TTTC-GGTA---A------------T-A-G---GT-TTGCGTTT-CGATAGG----------TT---------------TC------A----T----TT---CGTTTCGttcggtgggattcgtttcgggtagatttcgtttcggttttctatttcgtatgcaaactcttacaagt
gi|5 : aaataattatatgcaaatcacaagatgtttacgtagtgacttaataagG-----TT-TC----CG--T----T---------------TCG----CTTC-GGT----G----------------G---GA-TT-CGTTT-C-----G----------GG---------------TA-----GA----T----TT---CGTTTCGgtataggcttcgtttcatttctggtgggtttccgtttcgcttcggtgggattcgtttcgggtagatttcgtttcggttttctatttcgtatgcaaactcttacaagt
gi|6 : aaataattatatgcaaatcacaagatgtttacgtagtgacttaataagatgaaccgtaattactgagttgttcgccatttaattgcttgataacattaaatatttctgcttgttataatgttcccgttcttactatttttttcggtaataggtttgcgtttcgataggtttcatttcgtttcggtataggcttcgtttcatttctggtggAA-AATAATTA-TT-CAAA-CATCCAGA-TGTTTAC-GTAGTGACTT-AATAAGATGAC-CGTAATTC----ACTGCAGTTGTTCGC--CATTTAATTGGCTATAACAT-TAA------------ATA--TTT--CTG-CTT-----GTA--T--------AATGT-T---CCGTTT-T-TCTATATT-GT----TTCGGT-AAT---AGG-TT-TGCGTT--T-C-GATA-G----G-----TT-TC----A---T----T---------------TCG----TTTCGGGT----A------------T-A-G---GC-TT-CGTTT-CA----A----------TT---------------TC-----GG----TGGG-TTTCCCGTTTCGCgttttctatttcgtatgcaaactcttacaagt
gi|6 : ATGA-CCGTAATT-CACTGCAGTTGT-TC-GCCATTT-AATTG--GCT-ATAACATTA----AAT---A-T-TTCTG-CTTG-TAT-AAT--GTTCCG-----TT-TT----T---C----TATA------------TTG----TTTC-GGTA---A------------T-A-G---GT-TTGCGTTT-CGATAGG----------TT---------------TC------A----T----TT---CGTTTCGttcggctgggatttcgtttcggggtagatttcgtttcgtttctatttcgttgcacactttacaag
gi|6 : aaaataattattcaaacatccagatgtttacgtagtgacttaataag---T----T---------------TCG----TTTC-GGG----G------------T-A-G---AT-TT-CGTTT-C-----G----------TT---------------TC-----TA----T----TT---CGTTGCACACTTggtataggcttcgtttcaatttcggtgggtttcccgtttcgcttcggctgggatttcgtttcggggtagatttcgtttcgtttctatttcgttgcacactttacaag
gi|7 : aaaataattattcaaacatccagatgtttacgtagtgacttaataagatgaccgtaattcactgcagttgttcgccatttaattggctataacattaaatatttctgcttgtataatgttccgtttttctatattgtttcggtaataggtttgcgtttcgataggtttcatttcgtttcgggtataggcttcgtttcaatttcggtgggtttcccgtttcgcttcggctgggaTGTTGCTAAAACGCAGAGCGGAAAA-CGGAATGGAAA-TTAAGGTAAA-TGTATAG-TTAAA---TACCA--AAAACCGTGAAAAAAGTGTTTTATT-----TT--AA-TCAAAA-TCCT---AATTACTTTACAAGCGGTGAAACAATTG-TGTCT------GTTC---------T-AGGTTGATTAATCC---TCG----------TGTCAGTCATGTGATGTC-----A-TAG-CATTTTAAAA-AAACTTTGCGCATTTTATtacaag
gi|8 : -AAAATACGACACGGGTCCTTTCTCTCGGGGCTATTT-AA-CATTCAGTAGG-AAATGTGTAA-----GATCCCG-TCTATTTTGTATT-GGAGTGCT-GTTAACATTC-ATTCTCT-GTTAGTTAAAA-AATAATTA-AT-CAAA-CG-CAAGA-TGTTTACATTAATGAC-TGAATA--ATCA--CG-AATTA----A------TCGTT--A--CATTT-----------ACAT-GCC------------ACA--
gi|9 : aca-----TT-TC----G---T----T---------------TCG----TTTT-GGT----A----------------G---AT-TT-CGCTT-C-----G----------TT---------------TC-----TA----T----TT---CGTTTCGCACTTc
gi|9 : cctgtaG-----TT-TC----G---T----T---------------TCA----TTTC-GGT----A----------------G---AT-TT-CGTTT-C-----G----------TT---------------TT-----GGTAGAT----TT---CGCTTCGtctaccgaaatgaaacgaaacccaccgaaacgaaacgaaacctaaaagcacaaggtaaaaatcttaagttaacttagatcataatgggacaggggcaattgagtttcagaaatttcagatgggagggtgt
gi|9 : cctgtaaagtgcgaaacgaaatagaaaG-----TT-TC----G---T----T---------------TCG----TTTC-GGT----G----------------G---GT-TT-CGTTT-C-----A----------TT---------------TC-----GGTAGAT----TT---CGTTTCGccaccgaaacgaaacgaaacctaaaagcacaaggtaaaaatcttaagttaacttagatcataatgggacaggggcaattgagtttcagaaatttcagatgggagggtgt
gi|9 : cctgtaaagtgcgaaacgaaatagaaacgaagcgaaatctaccaaaaAAG-TTAACTTAG-ATCAT-A---ATGGGACAGGGGCAATTGAGTTTCAGAAATTTCAGATGGG-AGGGTG--ctaaaagcacaaggtaaaaatcttaagttaacttagatcataatgggacaggggcaattgagtttcagaaatttcagatgggagggtgt
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|17 ): GTGGGTTTCGGGATTTCGGTTAGATTTCGGTTGTTTCGTTTCGTGTTTCGTTTCGATTTTCGATTCTTTCGCACTTACA
Unaligned ( gi|20 ): GTAAATTTCGTTTCATTTCGGTAGATTGCGTTTCGTTTTGCATTTTACAGGTAC
Alignments
lowQualScore : 1 1 11111 22222 22 1 1111 111111 11 33333 444444444444444444444 55555555 222222 33333333 111111 222222 222222222 11 222222 11 1 1 2222 111 333333333 1 1111111111 1 11 1111 1 444444444444 333333333333 22222 1 11 1 222222222222 11111 2222222222222222222222222222222 11111111111 1111 1111 11111111111 111111111111 22222222222222222222 2222222222222222222222222222
lowQualScore : 0 0 88888 55555 00 0 4444 888888 00 0 33333 0 555555555555555555555 77777777 66 0 0 111111 99999999 8 888888 0 3 888888 0 0 8 3 1 99 77 000000000 00 3 8 1 333333 11 11 8 8 1 3 0 8 0 0000 111 0 8 0 777777777 6 1 0 4444444444 8 88888 5 0 33 8888 0 777777777777 33 8 11 666666666666 8 8 8 00000 8 8 8 1 8 0 1 8 0 5 5 5 5 77 5 5 1 0 1 1 33 0 3 555555555555 00000 7777777777777777777777777777777 66 77 5 00000000000 0 4 2 4 777 4 6 4 2222 4444 777 888 4 8 33 3 3 99 3 22222222222 1 888888888888 6666 1 3333 1 22222222222222222222 1 222 1 1 1 55555 1 7777777777777777777777777777 6666 444
lowQualScore : . . ..... ..... .. . .... ...... .. . ..... . ..................... ........ .. . . ...... ........ . ...... . . ...... . . . . . .. .. ......... .. . . . ...... .. .. . . . . . . . .... ... . . . ......... . . . .......... . ..... . . .. .... . ............ .. . .. ............ . . . ..... . . . . . . . . . . . . . .. . . . . . . .. . . ............ ..... ............................... .. .. . ........... . . . . ... . . . .... .... ... ... . . .. . . .. . ........... . ............ .... . .... . .................... . ... . . . ..... . ............................ .... ...
lowQualScore : 0 0 55555 00000 55 0 5555 777777 33 7 77777 7 000000000000000000000 77777777 88 2 8 000000 88888888 8 888888 2 2 888888 8 6 0 2 0 22 77 222222222 66 8 0 0 222222 00 88 0 0 4 8 0 8 0 8888 888 6 0 8 222222222 0 4 8 4444444444 0 88888 6 0 88 8888 0 888888888888 22 0 66 444444444444 0 0 0 00000 0 0 0 4 0 8 4 0 6 7 7 7 7 11 7 7 0 1 4 0 66 0 2 666666666666 88888 6666666666666666666666666666666 99 99 7 44444444444 8 4 2 4 444 4 7 4 7777 1111 000 777 0 0 99 2 3 66 5 66666666666 7 333333333333 5555 7 5555 6 66666666666666666666 6 777 5 5 6 66666 7 3333333333333333333333333333 7777 888
consensus : AAG-TTAACTTAG-ATCAT-A---ACGGG-----GGCAAC-GAGTTTCAGAAATTTCAGATGGG-AGGGNG--GGGTTGCGTCGTTACAGGTCGGACGTCGGGC-G--ATAACTCGAAACGACGGGGGGTTTCAGTANCTC-----CTGAAGACAAATGTA-----AC-TGCGCATATTGT-T-G--TTT-A------CAAGATGGACTAAT--G-A-TTGGCGCAAAAGTTTATAGATA------TAGTAGTGTTGCTAAAACGTGGAAAAGAAAA-CGGANGGGAAATTTAAG--AAN-TACATGT-TTAAA---AATCATGAAANCCG-GAGAAA----TTTAATTGGA--TTAAAA-TCAAAA-TCGTAGGAATTTGTTCAC-AGCGGTAAAACAATTT-TGTCTT---AAATTCT--ACAACAT-AAATTGATTAAGCTAAGTTGG--------ATGTTGGT-ATGAAATTTCTCTGTACTAG-CGTTTTACAA-AAACTTTGCA-ATTTCATCTTTGGCAGAGGTGTTAGCG-AGCA--GAG-G-CAGAGA-ATTGAA--------G---GGGGGGAGAC-AAAATACGACACGGGCCCTTTCTCTCGGGGCTATTT-AA-CATTCGGTAGG-AAATGTGTAA-----GATCTCG-TCTATTTTGTATT-GGAGTGCT-GTTAACATTC-AGTCCCT-GTTATTTAAAA-AATAATTA-AT-CAAA-CG-CAAGA-TGTTTAC-TTANTGACTTGAATAAGATNA--CG-AATTN----A------TCGTT--A--CATTT-----------ACAT-GCC------------ACA--TTT--CTG-CATGACCGTA--T-TACTG-AGATGC-TC-GCCATTTA-TTGCTATT-ATAA-ATTA----AAT---A-G-TT-TG-GTTG-TAC-AAT--GTTCCG-----------TT-TC----G-------TT----TC-G----TTTC-GGT----A------------T-A-G---GT-TT-CGTTT-C-----G-TT---------------TC-----GG----T----TT---CGTTTCGCACTT
Reference ( family-74 ) : AAG-TTAACTTAG-ATCAT-A---ACGGG-----GGCAAC-GAGTTTCAGAAATTTCAGATGGG-AGGGNG--GGGTTGCGTCGTTACAGGTCGGACGTCGGGC-G--ATAACTCGAAACGACGGGGGGTTTCAGTANCTC-----CTGAAGACAAATGTA-----AC-TGCGCATATTGT-T-G--TTT-A------CAAGATGGACTAAT--G-A-TTGGCGCAAAAGTTTATAGATA------TAGTAGTGTTGCTAAAACGTGGAAAAGAAAA-CGGANGGGAAATTTAAG--AAN-TACATGT-TTAAA---AATCATGAAANCCG-GAGAAA----TTTAATTGGA--TTAAAA-TCAAAA-TCGTAGGAATTTGTTCAC-AGCGGTAAAACAATTT-TGTCTT---AAATTCT--ACAACAT-AAATTGATTAAGCTAAGTTGG--------ATGTTGGT-ATGAAATTTCTCTGTACTAG-CGTTTTACAA-AAACTTTGCA-ATTTCATCTTTGGCAGAGGTGTTAGCG-AGCA--GAG-G-CAGAGA-ATTGAA--------G---GGGGGGAGAC-AAAATACGACACGGGCCCTTTCTCTCGGGGCTATTT-AA-CATTCGGTAGG-AAATGTGTAA-----GATCTCG-TCTATTTTGTATT-GGAGTGCT-GTTAACATTC-AGTCCCT-GTTATTTAAAA-AATAATTA-AT-CAAA-CG-CAAGA-TGTTTAC-TTANTGACTTGAATAAGATNA--CG-AATTN----A------TCGTT--A--CATTT-----------ACAT-GCC------------ACA--TTT--CTG-CATGACCGTA--T-TACTG-AGATGC-TC-GCCATTTA-TTGCTATT-ATAA-ATTA----AAT---A-G-TT-TG-GTTG-TAC-AAT--GTTCCG-----------TT-TC----N-------TT----TC-G----TTTC-GGT----A------------T-A-G---GT-TT-CGTTT-C-----G-TT---------------TC-----GG----T----TT---CGTTTCGCACTT
gi|1 : -AATCG----A------TTATT--A--TCTTT-----------ATGT-GGC------------ACC--TTT--C-A-CAGGG----------ATCG-AGATAT-T--ATCATTTA-TTGATATT-AT-G-ATTA----AATATAA-A-CT-TG-GTTG-TACAAATTGGTTCTG-----------TT-------A-------TT----TCTG----CTTC-AGC----A--------------A-G---AT-TT-
gi|1 : acctgttagtgcgaaaacgaaaatannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaaAAGCTTGACTTAG-ATCATTA---ACGGC-----GGCAA--GAGTTTCAGAAATGTCAAATGCATAGGGAG--GGGGTAAGTCG-----GGTTGGA--TTGGGTTGTTATAGGTCGGGACGTCAGGGA-------TAACT---------AAGACAAATGCA-----AT-T--------TGT-T-C--TTT-ATTACAACAAGATG-ACTAATTGA-A-TTGGCGCAAAAGTT-ATAAATA------TAGTAATATTACTAAAACGTGGAAAATAAAATCCGATGAGAAATCTAAA--AAAATACATGTATTATA---AATCATGAAAACCG-GAGAAA----TTTAATCGTAGTTTAAAAATCAAAAATAGTGGGAATTTGTTCAC-A-TGGTAAAACAATTTATATTTTTTAAAATTCTTTGTCACATTAAATTGATTAAGCTAAGTTGGTATGTAGAATGTTGGTTATATATTTTCTCTGTACAAGGTGTTTTACAA-AAACTTTGTA-ATT-CATCTTTGGCAGAGATGTTAGCGCAGCAAAGGG-G-CAGTGA-ATTGGA--------ATGCGAGGGGAGAC-AAAA-ATAA---------------TCGGGGTTATTT-AAACATTCGGTGGGGAAATGTTCAACTCTTGATCTTGGTCTATTTTGTATTTGAAGTGCTTGTCAA-ATTCCAGTCCCTTGTTATTTAAAACAATAATTA-AT-CAAG-CA-CAAG--TGTTT---TTACT--CT-------GATT----G-AATT-----A------TCGTT--A--TATTT-----------ACAT-GCC------------ACA--CTTTACTGATATGACCGTA--TCTACTG-AGATGC-TTTGCCATTTA-TTGCTATTTATAA-ATTA----AAT---A-G-TT-TG-GTTA-TAC-AAT--GTTCCGCTCTCTTTATGTT-TC----GGTGGG--TT----TC-G----TTTT-GATTCGGA------------T-A-G---GT-TT-CGTTT-C-----GTTT---------------TC-----TA----T----TT---CGTTagggtaaatgatggggtcaccatttattacaatcaacagttagagaagaagaaaaccggtgtctgaagaaagtaaaaatatcacagaaaacagggcaaatcataaaaggagggggggtgggacacaaagtaaaaatcttaagcttgacttagatcattaacggcggcaagagtttcagaaatgtcaaatgcatagggagggggtaagtcgggttggattgggttgttataggtcgggacgtcagggataactaagacaaatgcaatttgttctttattacaacaagatgactaattgaattggcgcaaaagttataaatatagtaatattactaaaacgtggaaaataaaatccgatgagaaatctaaaaaaatacatgtattataaatcatgaaaaccggagaaatttaatcgtagtttaaaaatcaaaaatagtgggaatttgttcacatggtaaaacaatttatattttttaaaattctttgtcacattaaattgattaagctaagttggtatgtagaatgttggttatatattttctctgtacaaggtgttttacaaaaactttgtaattcatctttggcagagatgttagcgcagcaaaggggcagtgaattggaatgcgaggggagacaaaaataatcggggttatttaaacattcggtggggaaatgttcaactcttgatcttggtctattttgtatttgaagtgcttgtcaaattccagtcccttgttatttaaaacaataattaatcaagcacaagtgtttttactctgattgaattatcgttatatttacatgccacactttactgatatgaccgtatctactgagatgctttgccatttattgctatttataaattaaatagtttggttatacaatgttccgctctctttatgtttcggtgggtttcgttttgattcggataggtttcgtttcgttttctatttcgtt
gi|10 : acctgttagtgcgaaaacgaaaatannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaaaaatcttgctgaagcagaaataacagaaccaatttgtacaaccaagtttatatttaatcataatatcaataaatgataatatctcgatccctgtgaaaggtgccacataaagataataatcgattagggtaaatgatggggtcaccatttattacaatcaacagttagagaagaagaaaaccggtgtctgaagaaagtaaaaatatcacagaaaacagggcaaatcataaaaggagggggggtgggacacaaagtaaaaatctt-TAT-AAT--GGTCTG-----------CT-TA----T-------TT----TT-G----CTTC-GGT----A------------T-A-A---ATATT-TGCTT-G-----G-TT---------------TCGGTA-GG----T----TT---CATTTCG
gi|10 : aatattacatgtataatcTA----AAT---A---TT-TG-CTTG----------GTTTCGGTAGG------TT-TC----A-------TT----TC-G----TTTC-GGT----A------------T-A-G---GT-TT-CGTTT-C-----G-TT---------------TCGGTG-GG----T----TT---CGTTTCGtttcggtataggtttcgtttcgtttcggtgggtttcgtttcgtttttatttcgtttcgcacttta
gi|10 : aatattacatgtataatctataatggtctgcttatttttgcttcggtaG-----------TT-TC----G-------TT----TC-G----TTTC-GGT----G----------------G---GT-TT-CGTTT-C-----G-TT---------------TT-----TA----T----TT---CGTTTCGCACTTtttttatttcgtttcgcacttta
gi|11 : aatattacatgtataatctataatggtctgcttatttttgcttcggtataaatatttgcttggtttcggtaggtttcatttcgtttcggtatagC-----CTACAAACAAATGTATGTATACATGCGCATACTGT-T-GATTTT-A------CAAAATGGACAAAT--G-A-TTGGGACAAATGTTTCTAGATATACATTTAGGAGTGTTGCTTCAATGTGG-ACGGGAAA-TAGAAGGGATATATAAG--AAT-Tta
gi|12 : AG-TTAATTTAGCATCAC-ATAAACGGG-----GGCAGT-GAGTTCCAGAAATTTCAAATGGA-AGGG-G--GGGTTGC----TTACATGTCGGACGTCAGGC-G--AAAACACGAAACAACG
gi|13 : gggtgggggacccaacagtaaaaatcctTG-TCC-AA---GTTTCG-----------TT-TC----AGTAGA--TT----TC-G----TTTC-AGT----AGATTTCGTTCGGT-A-G---AT-TT-CGTTT-C-----G-TT---------------TCAGTA-GA----T----TT---CGTTCCGcgag
gi|13 : ttgttcacgactccgtgca-----------TT-TC----G-------TT----TC-G----TTTC-AGT----A----------------G---AT-TT-CGTTC-C-----G-TT---------------TC------G----T----TT---CGtttcgtttcgcaatttacagg
gi|14 : ttgttcacgactccgtgcatgtccaagtttcgtttcagtagatttcgtttcagtagatttcgttcggtaga-----------TT-TC----G-------TT----TC-G----TTTC-GCG----G------------T-A-G---AC-TT-CGTTT-C-----G-TTCGGCAGGTTTTTGTTTC-----GT----T----TT---CGTTTCGCACTTcaatttacagg
gi|15 : cttaTTC-AGT----G----------------G---AT-TT-CGTTT-C-----G-TT---------------TC-----GG----TAGACTT---CGTTTCGtccactgaaa
gi|15 : T-TC----G-------TT----TC-G----TTTC-GGC----A----------------G---GT-TT-TGTTT-C-----G-TT---------------T------------------T---CGTTTCGCACTTtttcggcaggttttgtttcgttttcgtttcgcactttacagg
gi|16 : ttcagtggatttcgtttcgtttcggtagacAAATTTAAG--AAT-TACATGT----AATGTAATCAGGAAACCCG-GAGATA----TTTACTTGGA--TTAAAA-TCAAAA-TCGTAGGAATTTGtacagg
gi|18 : -----------TT-TT----G-------TT----TT-G----TTTC-GGT----A------------G-A-TTTTGT-TT-TGTTT-C-----A-TT---------------TC-----TA----T----TT---CGTTTCGCACTT
gi|19 : acctgtaA-ATTA----AAT---A-G-TT-TG-GTTG-TAC-AAT--GTTACG-----------TT-TC----T-------CTTTAATT-G----TTTC-GGT----A------------T-AGG---GT-TT-CGTTT-C-----tacaccgaaacgaa
gi|2 : AAG-TTAACTTAG-ATCAT-A---ACGGG-----GGCAAC-AAGTTTAAAAAATTTCAGATGGG-AGGGGGTTGGGTTGTGTTGTTACAGGTCGGACATCAGG--G--ATAACTCGAAACAACGGGAGGTTTCAGTATTTCTTGCCCTGAAGACAAATGTA--------TGTGCATATTGTAT-G--TTTTA------CAAGATAGACTAAT--G-AATTGGTGCAAAAGTTTATGAATA------TAGTAGTGTTACTAAAACGTGGAAAAGAAAA-CCGATGAGAAATTTAAG--AAC-TACATGT-TTAAG---AATCATGAAACCTG-GAGAAA-------AATTGGA--TTAAAA-TCAAAA-TTGTAGGAATTTGTTCAC-ATCGGTAAAACAATTT-TGTCTT---AAATTCT--ACAACAT-AAATTGATTAAACGAAGTTGT--------ATGTTAGT-ATGAAATTTCTCTGTGCTAG-TGTTTTACAA-AAACCTTGTA-ATTTCATCTTTGGCAGAGGTGTTAGTG-AGCA--GAG-GACAGAGA-ATTGAA--------G---GGGGGGGGAC-AAAATACGACA-----------------GGCTACTT-AA-CATTCAGTAGG-AAGTGTGTAA-----GATCTCG-TCTATTTTGTATT-GGAGTGCT-GTTAACAACC-AGTTTCT-GTTATTTAAAA-AATAATTA-AT-CGAA-CA-CAAGA-TGTTTAC-TTACTGACTTGAATGAGATCA--CG-AATTT----A------TCGTT--A--CATTT-----------ACAT-GCC------------ACA--TTT--CTG-CATGACTGTA--T-TACTG-AGATGC-AC-GCCATTTA-TTGCTATT-ATGA-ATTA----AAT---A-G-TT-TG-GTTG-TAC-AAT--GTTCCG-----------TT-TC----T-------CT----TT-G----CTTC-GGT----A------------TAA-G---GT-TT-CGTTT-C-----G-TT---------------TT-----GA----T----TT---CGTTTCGCACTTaat
gi|20 : -----------TT-TC----G-------TT----TC-A----TTTC-GG------------------T-A-G---AT-TG-CGTTT-C-----G-TT---------------TT-----G
gi|21 : gtaaa---GT-TT-CGTTT-C-----G-TT---------------TC-----GA----T----TT---AGTTTTGCACTTcattttacaggtac
gi|22 : --T-TACTG-AGTTGC-TC-GCCATTTA-TTGCTATT-ACAA-ATTA----AAtacaggta
gi|3 : GTGTATATTGT-TTG--TTT-AA-----TAAGATACACTAAT--GCA-TTGGCGCAAAAGTTTATAGATA------TATTAGTTTTGCTAAAACGTGGAAAAGAAAA-CGGACGGGAAATTTAAG--AAT-TACATGT-ATTAT---AATCAT---------------------TAATTGGG--TCATAT-TCAAAA-TTGTAGGAATTTGTTCAC-AGCGGTAAAACAATTT-TACCTT---AAATTCT--ACAGCAT-AAATTGATTAAGCTAAGTTGA--------ATGTTGGT-AAAACATTTCTC---------------ACAACAAACTT-GCA-ATTTCACCATTGACAGAGATGTTAGCG-ATCA--GA----CAGAGTTATTGAA--------G---GGGGG-------AAAT-CGACACAGACCCTTT-TCTCGTGGCTATTTTAA-CATTCAGTACG-AAGTGTGTAA-----GATCTCG-TTGATTTTGTATT-GGAGTGCT-GTTAACAATC-AG-----------TTAAAA-AATTATCA-AT-CAAA-CA-CAAGATTTTTTAC-TTATTGACTTGAATAAGATAA--TG-AA-TA----A------TCGTA--A--CATTT-----------ACA----------------------------TG-TATGACCGTT--T-TACTG-AGATGC-TC-G-CATTTA-TTGCTATT-ATGA-ATTA----AAT---A-A-TT-TG-GTTG-TAC-AAT--GTCCAG-----------AT-TC----T-------TT----AT-G----TTTC-TGC----A------------TCA-G---GT-TT-GGTTT-C-----G-GC---------------T------GG----T----TT---CGTTTCG
gi|3 : T--GTTTCA-----------TT-TC----G-------TT----TC-G----TTTC-AG------------------T-A-G---AT-TT-CGTTT-C-----G-AT----------------------------T----TT---GGTTTCGCACTTtttaagtggatttcgtttcgtttttggtgtgtttcatttcgtttcgtttcagtagatttcgtttcgattttggtttcgcactttactgg
gi|4 : gtgtatattgtttgtttaataagatacactaatgcattggcgcaaaagtttatagatatattagttttgctaaaacgtggaaaagaaaacggacgggaaatttaagaattacatgtattataatcattaattgggtcatattcaaaattgtaggaatttgttcacagcggtaaaacaattttaccttaaattctacagcataaattgattaagctaagttgaatgttggtaaaacatttctcacaacaaacttgcaatttcaccattgacagagatgttagcgatcagacagagttattgaaggggggaaatcgacacagacccttttctcgtggctattttaacattcagtacgaagtgtgtaagatctcgttgattttgtattggagtgctgttaacaatcagttaaaaaattatcaatcaaacacaagattttttacttattgacttgaataagataatgaataatcgtaacatttacatgtatgaccgttttactgagatgctcgcatttattgctattatgaattaaataatttggttgtacaatgtccagattctttatgtttctgcatcaggtttggtttcggctggtttcgtttcgtttaagtggatttcgtttcgtttttggtgAATTTT--ACAACAT-AAATTGATTAAGCTAAGCTGG--------ATGTTGGT-ATGAAATCTCTTTGTACTAG-TGTTTTACAA-AAA--------------TCTTTGACAGAGGTGTTAGCT-AGCA--GAGTG-CAGACA-ATTGAAATGGGGGGG---AGGGGGAGACTAAAATATGACACAAGCCCCTTCTCTCGGGGCTATTT-AA-CATTCGGTAGG-AAATGTGTAA-----GATCTAG-TCTATTTTGTATT-GGAGTGCT-GTTAACATTC-AGTCCCT-GTTATTCAAAA-AATAATTA-AT-CAAA-CG-CAAGA-TGTTTAC-TTATTGACTTAAATAAGATCA--CG-AA-TG----G------TCGTT--A--TA-TT-----------ACATCGCC------------ACAACTTC--CTG-TATGAACGTA--T-AACTG-AG-TGCTTC-GCCA-TTA-TTG-TATT-ATAA---TA----AAT---A-G-TT----GTTGCCAC-AAT--GTT-CG-----------TTCTCTTTGT-------TT----TC-GTCTATTTT-TAT----A------------A-A-G---GT-TC-CGTTTAC-----G-GT---------------TA-----GG----T----TT---CGTTTtactgg
gi|5 : A-AATAATTATATGCAAATCA-CAAGA-TGTTTAC-GTAGTGACTT-AATAAGATGAACCGTAATTACTGAG------TTGTT--CGCCATTT-----------AATT-GCTTGATAACATTAAATA--TTT--CTG-CTTG--------T-TAT----AATGT-TC--CCGTTC--TTACTATT-TT----TTTCGGTAAT---A-GGTT-TGCGTT--T-C-GATA-G----G-----------TT-TC----A-------TT----TC-G----TTTC-GGT----A------------T-A-G---GC-TT-CGTTT-C-----A-TT---------------TCTGGTGGG----T----TTC--CGTTTCGCgtttcgtgtggggttcgtttcgtattggtgggtgttgttatcgatttcggtagaatttcgttcgttcagtttttcgattgtcgcgcacattttacag
gi|5 : -----------TT-CC----G-------TT----TC-G----CTTC-GGT----G----------------G---GA-TT-CGTTT-C-----G-GG---------------TA-----GA----T----TT---CGTTTCGttcggtgggattcgtttcgggtagatttcgtttcggttttctatttcgtatgcaaactcttacaagt
gi|6 : aaataattatatgcaaatcacaagatgtttacgtagtgacttaataagatgaaccgtaattactgagttgttcgccatttaattgcttgataacattaaatatttctgcttgttataatgttcccgttcttactatttttttcggtaataggtttgcgtttcgataggtttcatttcgtttcggtataggcttcgtttcatttctggtgggtAA-AATAATTA-TT-CAAA-CATCCAGA-TGTTTAC-GTAGTGACTT-AATAAGATGAC-CGTAATTC----ACTGCAGTTGTTCGC--CATTTAATTGGCTATAACAT-TAA------------ATA--TTT--CTG-CTT----GTA--T--------AATGT-T---CCGTTTT-TCTATATT-GT----TTCGGT-AAT---AGG-TT-TGCGTT--T-C-GATA-G----G-----------TT-TC----A-------TT----TC-G----TTTCGGGT----A------------T-A-G---GC-TT-CGTTT-CA----A-TT---------------TC-----GG----TGGG-TTTCCCGTTTCGCgttttctatttcgtatgcaaactcttacaagt
gi|6 : ATGACCGTAATT-CACTGCAGTTGT-TC-GCCATTTAATTG--GCT-ATAACATTA----AAT---A-T-TTCTG-CTTG-TAT-AAT--GTTCCG-----------TT-TT----T-------CTATA-TT-G----TTTC-GGTA---A------------T-A-G---GT-TTGCGTTT-CGATAGG-TT---------------TC------A----T----TT---CGTTTCGttcggctgggatttcgtttcggggtagatttcgtttcgtttctatttcgttgcacactttacaag
gi|6 : aaaataattattcaaacatccagatgtttacgtagtgacttaataag--GTTTCG-----------CT-TC----GGCTGGGATT----TC-G----TTTC-GGG----G------------T-A-G---AT-TT-CGTTT-C-----G-TT---------------TC-----TA----T----TT---CGTTGCACACTTggtataggcttcgtttcaatttcggtgggtttcccgtttcgcttcggctgggatttcgtttcggggtagatttcgtttcgtttctatttcgttgcacactttacaag
gi|7 : aaaataattattcaaacatccagatgtttacgtagtgacttaataagatgaccgtaattcactgcagttgttcgccatttaattggctataacattaaatatttctgcttgtataatgttccgtttttctatattgtttcggtaataggtttgcgtttcgataggtttcatttcgtttcgggtataggcttcgtttcaatttcggtgggtttcccTGTTGCTAAAACGCAGAGCGGAAAA-CGGAATGGAAA-TTAAGGTAAA-TGTATAG-TTAAA---TACCA--AAAACCGTGAAAAAAGTGTTTTATT-----TT--AA-TCAAAA-TCCT---AATTACTTTACAAGCGGTGAAACAATTG-TGTCT------GTTC---------T-AGGTTGATTAATCC---TCG----------TGTCAGTCATGTGATGTC-----A-TAG-CATTTTAAAA-AAACTTTGCGCATTTTATtacaag
gi|8 : -AAAATACGACACGGGTCCTTTCTCTCGGGGCTATTT-AA-CATTCAGTAGG-AAATGTGTAA-----GATCCCG-TCTATTTTGTATT-GGAGTGCT-GTTAACATTC-ATTCTCT-GTTAGTTAAAA-AATAATTA-AT-CAAA-CG-CAAGA-TGTTTACATTAATGAC-TGAATA--ATCA--CG-AATTA----A------TCGTT--A--CATTT-----------ACAT-GCC------------ACA--
gi|9 : aca-----------TT-TC----G-------TT----TC-G----TTTT-GGT----A----------------G---AT-TT-CGCTT-C-----G-TT---------------TC-----TA----T----TT---CGTTTCGCACTTc
gi|9 : cctgtaG-----------TT-TC----G-------TT----TC-A----TTTC-GGT----A----------------G---AT-TT-CGTTT-C-----G-TT---------------TT-----GGTAGAT----TT---CGCTTCGtctaccgaaatgaaacgaaacccaccgaaacgaaacgaaacctaaaagcacaaggtaaaaatcttaagttaacttagatcataatgggacaggggcaattgagtttcagaaatttcagatgggagggtgt
gi|9 : cctgtaaagtgcgaaacgaaatagaaaG-----------TT-TC----G-------TT----TC-G----TTTC-GG------------------T-G-G---GT-TT-CGTTT-C-----A-TT---------------TC-----GGTAGAT----TT---CGTTTCGccaccgaaacgaaacgaaacctaaaagcacaaggtaaaaatcttaagttaacttagatcataatgggacaggggcaattgagtttcagaaatttcagatgggagggtgt
gi|9 : cctgtaaagtgcgaaacgaaatagaaacgaagcgaaatctaccaaaaAAG-TTAACTTAG-ATCAT-A---ATGGGACAGGGGCAATTGAGTTTCAGAAATTTCAGATGGG-AGGGTG--ctaaaagcacaaggtaaaaatcttaagttaacttagatcataatgggacaggggcaattgagtttcagaaatttcagatgggagggtgt
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|17 ): GTGGGTTTCGGGATTTCGGTTAGATTTCGGTTGTTTCGTTTCGTGTTTCGTTTCGATTTTCGATTCTTTCGCACTTACA
Alignments
lowQualScore : 1 1 11111 22222 22 1 1111 111111 11 33333 444444444444444444444 55555555 222222 33333333 111111 222222 222222222 11 222222 11 1 1 2222 111 333333333 1 1111111111 1 11 1111 1 444444444444 333333333333 22222 1 11 1 222222222222 11111 2222222222222222222222222222222 11111111111 1111 1111 111111111111 11 11111111111 1111111 2222222222222222222222 22222222222222222222222222222222
lowQualScore : 0 0 88888 55555 00 0 4444 888888 00 0 33333 0 555555555555555555555 77777777 66 0 0 111111 99999999 8 888888 0 3 888888 0 0 8 3 1 99 77 000000000 00 3 8 1 333333 11 11 8 8 1 3 0 8 0 0000 111 0 8 0 777777777 6 1 0 4444444444 8 88888 5 0 33 8888 0 777777777777 33 8 11 666666666666 8 8 8 00000 8 8 8 1 8 0 1 8 0 5 5 5 5 77 5 5 1 0 1 1 33 0 3 555555555555 00000 7777777777777777777777777777777 66 77 5 00000000000 0 4 2 4 777 4 6 4 2222 4444 777 888 4 8 000000000000 3 11 555 88888888888 5555555 6666 1 3333 1 6666666666666666666666 222 1 3 1 55555 1 55555555555555555555555555555555 333
lowQualScore : . . ..... ..... .. . .... ...... .. . ..... . ..................... ........ .. . . ...... ........ . ...... . . ...... . . . . . .. .. ......... .. . . . ...... .. .. . . . . . . . .... ... . . . ......... . . . .......... . ..... . . .. .... . ............ .. . .. ............ . . . ..... . . . . . . . . . . . . . .. . . . . . . .. . . ............ ..... ............................... .. .. . ........... . . . . ... . . . .... .... ... ... . . ............ . .. ... ........... ....... .... . .... . ...................... ... . . . ..... . ................................ ...
lowQualScore : 0 0 55555 00000 55 0 5555 777777 33 7 77777 7 000000000000000000000 77777777 88 2 8 000000 88888888 8 888888 2 2 888888 8 6 0 2 0 22 77 222222222 66 8 0 0 222222 00 88 0 0 4 8 0 8 0 8888 888 6 0 8 222222222 0 4 8 4444444444 0 88888 6 0 88 8888 0 888888888888 22 0 66 444444444444 0 0 0 00000 0 0 0 4 0 8 4 0 6 7 7 7 7 11 7 7 0 1 4 0 66 0 2 666666666666 88888 6666666666666666666666666666666 99 99 7 44444444444 8 4 2 4 444 4 7 4 7777 1111 000 777 0 0 999999999999 3 88 000 33333333333 4444444 5555 7 5555 6 0000000000000000000000 777 5 1 6 66666 7 66666666666666666666666666666666 000
consensus : AAG-TTAACTTAG-ATCAT-A---ACGGG-----GGCAAC-GAGTTTCAGAAATTTCAGATGGG-AGGGNG--GGGTTGCGTCGTTACAGGTCGGACGTCGGGC-G--ATAACTCGAAACGACGGGGGGTTTCAGTANCTC-----CTGAAGACAAATGTA-----AC-TGCGCATATTGT-T-G--TTT-A------CAAGATGGACTAAT--G-A-TTGGCGCAAAAGTTTATAGATA------TAGTAGTGTTGCTAAAACGTGGAAAAGAAAA-CGGANGGGAAATTTAAG--AAN-TACATGT-TTAAA---AATCATGAAANCCG-GAGAAA----TTTAATTGGA--TTAAAA-TCAAAA-TCGTAGGAATTTGTTCAC-AGCGGTAAAACAATTT-TGTCTT---AAATTCT--ACAACAT-AAATTGATTAAGCTAAGTTGG--------ATGTTGGT-ATGAAATTTCTCTGTACTAG-CGTTTTACAA-AAACTTTGCA-ATTTCATCTTTGGCAGAGGTGTTAGCG-AGCA--GAG-G-CAGAGA-ATTGAA--------G---GGGGGGAGAC-AAAATACGACACGGGCCCTTTCTCTCGGGGCTATTT-AA-CATTCGGTAGG-AAATGTGTAA-----GATCTCG-TCTATTTTGTATT-GGAGTGCT-GTTAACATTC-AGTCCCT-GTTATTTAAAA-AATAATTA-AT-CAAA-CG-CAAGA-TGTTTAC-TTANTGACTTGAATAAGATNA--CG-AATTN----A------TCGTT--A--CATTT-----------ACAT-GCC------------ACA--TTT--CTG-CATGACCGTA--T-TACTG-AGATGC-TC-GCCATTTA-TTGCTATT-ATAA-ATTA----AAT---A-G-TT-TG-GTT---G-TA-----C-AAT--GTTC---CG-----------TTTCG-------TT----TC-G----TTTC-GGT----A------------T-A-G---GT-TT-CGTTT-C-----G-TT---------------TC----GG----T----TT---CGTTTCGCACTT
Reference ( family-74 ) : AAG-TTAACTTAG-ATCAT-A---ACGGG-----GGCAAC-GAGTTTCAGAAATTTCAGATGGG-AGGGNG--GGGTTGCGTCGTTACAGGTCGGACGTCGGGC-G--ATAACTCGAAACGACGGGGGGTTTCAGTANCTC-----CTGAAGACAAATGTA-----AC-TGCGCATATTGT-T-G--TTT-A------CAAGATGGACTAAT--G-A-TTGGCGCAAAAGTTTATAGATA------TAGTAGTGTTGCTAAAACGTGGAAAAGAAAA-CGGANGGGAAATTTAAG--AAN-TACATGT-TTAAA---AATCATGAAANCCG-GAGAAA----TTTAATTGGA--TTAAAA-TCAAAA-TCGTAGGAATTTGTTCAC-AGCGGTAAAACAATTT-TGTCTT---AAATTCT--ACAACAT-AAATTGATTAAGCTAAGTTGG--------ATGTTGGT-ATGAAATTTCTCTGTACTAG-CGTTTTACAA-AAACTTTGCA-ATTTCATCTTTGGCAGAGGTGTTAGCG-AGCA--GAG-G-CAGAGA-ATTGAA--------G---GGGGGGAGAC-AAAATACGACACGGGCCCTTTCTCTCGGGGCTATTT-AA-CATTCGGTAGG-AAATGTGTAA-----GATCTCG-TCTATTTTGTATT-GGAGTGCT-GTTAACATTC-AGTCCCT-GTTATTTAAAA-AATAATTA-AT-CAAA-CG-CAAGA-TGTTTAC-TTANTGACTTGAATAAGATNA--CG-AATTN----A------TCGTT--A--CATTT-----------ACAT-GCC------------ACA--TTT--CTG-CATGACCGTA--T-TACTG-AGATGC-TC-GCCATTTA-TTGCTATT-ATAA-ATTA----AAT---A-G-TT-TG-GTT---G-TA-----C-AAT--GTTC---CG-----------TTTCG-------TT----TC-G----TTTC-GGT----A------------T-A-G---GT-TT-CGTTT-C-----G-TT---------------TC----GG----T----TT---CGTTTCGCACTT
gi|1 : -AATCG----A------TTATT--A--TCTTT-----------ATGT-GGC------------ACC--TTT--C-A-CAGGG----------ATCG-AGATAT-T--ATCATTTA-TTGATATT-AT-G-ATTA----AATATAA-A-CT-TG-GTT---G-TA-----CAAATTGGTTC---TG-----------TT--A-------TT----TCTG----CTTC-AGC----A--------------A-G---AT-TT-
gi|1 : acctgttagtgcgaaaacgaaaatannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaaAAGCTTGACTTAG-ATCATTA---ACGGC-----GGCAA--GAGTTTCAGAAATGTCAAATGCATAGGGAG--GGGGTAAGTCG-----GGTTGGA--TTGGGTTGTTATAGGTCGGGACGTCAGGGA-------TAACT---------AAGACAAATGCA-----AT-T--------TGT-T-C--TTT-ATTACAACAAGATG-ACTAATTGA-A-TTGGCGCAAAAGTT-ATAAATA------TAGTAATATTACTAAAACGTGGAAAATAAAATCCGATGAGAAATCTAAA--AAAATACATGTATTATA---AATCATGAAAACCG-GAGAAA----TTTAATCGTAGTTTAAAAATCAAAAATAGTGGGAATTTGTTCAC-A-TGGTAAAACAATTTATATTTTTTAAAATTCTTTGTCACATTAAATTGATTAAGCTAAGTTGGTATGTAGAATGTTGGTTATATATTTTCTCTGTACAAGGTGTTTTACAA-AAACTTTGTA-ATT-CATCTTTGGCAGAGATGTTAGCGCAGCAAAGGG-G-CAGTGA-ATTGGA--------ATGCGAGGGGAGAC-AAAA-ATAA---------------TCGGGGTTATTT-AAACATTCGGTGGGGAAATGTTCAACTCTTGATCTTGGTCTATTTTGTATTTGAAGTGCTTGTCAA-ATTCCAGTCCCTTGTTATTTAAAACAATAATTA-AT-CAAG-CA-CAAG--TGTTT---TTACT--CT-------GATT----G-AATT-----A------TCGTT--A--TATTT-----------ACAT-GCC------------ACA--CTTTACTGATATGACCGTA--TCTACTG-AGATGC-TTTGCCATTTA-TTGCTATTTATAA-ATTA----AAT---A-G-TT-TG-GTT---A-TA-----C-AAT--GTTC---CGCTCTCTTTATGTTTCGGTGGG--TT----TC-G----TTTT-GATTCGGA------------T-A-G---GT-TT-CGTTT-C-----GTTT---------------TC----TA----T----TT---CGTTagggtaaatgatggggtcaccatttattacaatcaacagttagagaagaagaaaaccggtgtctgaagaaagtaaaaatatcacagaaaacagggcaaatcataaaaggagggggggtgggacacaaagtaaaaatcttaagcttgacttagatcattaacggcggcaagagtttcagaaatgtcaaatgcatagggagggggtaagtcgggttggattgggttgttataggtcgggacgtcagggataactaagacaaatgcaatttgttctttattacaacaagatgactaattgaattggcgcaaaagttataaatatagtaatattactaaaacgtggaaaataaaatccgatgagaaatctaaaaaaatacatgtattataaatcatgaaaaccggagaaatttaatcgtagtttaaaaatcaaaaatagtgggaatttgttcacatggtaaaacaatttatattttttaaaattctttgtcacattaaattgattaagctaagttggtatgtagaatgttggttatatattttctctgtacaaggtgttttacaaaaactttgtaattcatctttggcagagatgttagcgcagcaaaggggcagtgaattggaatgcgaggggagacaaaaataatcggggttatttaaacattcggtggggaaatgttcaactcttgatcttggtctattttgtatttgaagtgcttgtcaaattccagtcccttgttatttaaaacaataattaatcaagcacaagtgtttttactctgattgaattatcgttatatttacatgccacactttactgatatgaccgtatctactgagatgctttgccatttattgctatttataaattaaatagtttggttatacaatgttccgctctctttatgtttcggtgggtttcgttttgattcggataggtttcgtttcgttttctatttcgtt
gi|10 : acctgttagtgcgaaaacgaaaatannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaaaaatcttgctgaagcagaaataacagaaccaatttgtacaaccaagtttatatttaatcataatatcaataaatgataatatctcgatccctgtgaaaggtgccacataaagataataatcgattagggtaaatgatggggtcaccatttattacaatcaacagttagagaagaagaaaaccggtgtctgaagaaagtaaaaatatcacagaaaacagggcaaatcataaaaggagggggggtgggacacaaagtaaaaatctt-TA-----T-AAT--GGTC---TG-----------CTTAT-------TT----TT-G----CTTC-GGT----A------------T-A-A---ATATT-TGCTT-G-----G-TT---------------TCGGTAGG----T----TT---CATTTCG
gi|10 : aatattacatgtataatcTA----AAT---A---TT-TG-CTT---G---------------GTTT---CGGTAGG------TTTCA-------TT----TC-G----TTTC-GGT----A------------T-A-G---GT-TT-CGTTT-C-----G-TT---------------TCGGTGGG----T----TT---CGTTTCGtttcggtataggtttcgtttcgtttcggtgggtttcgtttcgtttttatttcgtttcgcacttta
gi|10 : aatattacatgtataatctataatggtctgcttatttttgcttcggtaG-----------TTTCG-------TT----TC-G----TTTC-GGT----G----------------G---GT-TT-CGTTT-C-----G-TT---------------TT----TA----T----TT---CGTTTCGCACTTtttttatttcgtttcgcacttta
gi|11 : aatattacatgtataatctataatggtctgcttatttttgcttcggtataaatatttgcttggtttcggtaggtttcatttcgtttcggtatagC-----CTACAAACAAATGTATGTATACATGCGCATACTGT-T-GATTTT-A------CAAAATGGACAAAT--G-A-TTGGGACAAATGTTTCTAGATATACATTTAGGAGTGTTGCTTCAATGTGG-ACGGGAAA-TAGAAGGGATATATAAG--AAT-Tta
gi|12 : AG-TTAATTTAGCATCAC-ATAAACGGG-----GGCAGT-GAGTTCCAGAAATTTCAAATGGA-AGGG-G--GGGTTGC----TTACATGTCGGACGTCAGGC-G--AAAACACGAAACAACG
gi|13 : gggtgggggacccaacagtaaaaatcctT---G-TC-----C-AA---GTTT---CG-----------TTTCAGTAGA--TT----TC-G----TTTC-AGT----AGATTTCGTTCGGT-A-G---AT-TT-CGTTT-C-----G-TT---------------TCAGTAGA----T----TT---CGTTCCGcgag
gi|13 : ttgttcacgactccgtgca-----------TTTCG-------TT----TC-G----TTTC-AGT----A----------------G---AT-TT-CGTTC-C-----G-TT---------------TC-----G----T----TT---CGtttcgtttcgcaatttacagg
gi|14 : ttgttcacgactccgtgcatgtccaagtttcgtttcagtagatttcgtttcagtagatttcgttcggtaga-----------TTTCG-------TT----TC-G----TTTC-GCG----G------------T-A-G---AC-TT-CGTTT-C-----G-TTCGGCAGGTTTTTGTTTC----GT----T----TT---CGTTTCGCACTTcaatttacagg
gi|15 : cttaTTC-AGT----G----------------G---AT-TT-CGTTT-C-----G-TT---------------TC----GG----TAGACTT---CGTTTCGtccactgaaa
gi|15 : TTCG-------TT----TC-G----TTTC-GGC----A----------------G---GT-TT-TGTTT-C-----G-TT---------------T-----------------T---CGTTTCGCACTTtttcggcaggttttgtttcgttttcgtttcgcactttacagg
gi|16 : ttcagtggatttcgtttcgtttcggtagacAAATTTAAG--AAT-TACATGT----AATGTAATCAGGAAACCCG-GAGATA----TTTACTTGGA--TTAAAA-TCAAAA-TCGTAGGAATTTGtacagg
gi|18 : -----------TTTTG-------TT----TT-G----TTTC-GGT----A------------G-A-TTTTGT-TT-TGTTT-C-----A-TT---------------TC----TA----T----TT---CGTTTCGCACTT
gi|19 : acctgtaA-ATTA----AAT---A-G-TT-TG-GTT---G-TA-----C-AAT--GTTA---CG-----------TTTCT-------CTTTAATT-G----TTTC-GGT----A------------T-AGG---GT-TT-CGTTT-C-----tacaccgaaacgaa
gi|2 : AAG-TTAACTTAG-ATCAT-A---ACGGG-----GGCAAC-AAGTTTAAAAAATTTCAGATGGG-AGGGGGTTGGGTTGTGTTGTTACAGGTCGGACATCAGG--G--ATAACTCGAAACAACGGGAGGTTTCAGTATTTCTTGCCCTGAAGACAAATGTA--------TGTGCATATTGTAT-G--TTTTA------CAAGATAGACTAAT--G-AATTGGTGCAAAAGTTTATGAATA------TAGTAGTGTTACTAAAACGTGGAAAAGAAAA-CCGATGAGAAATTTAAG--AAC-TACATGT-TTAAG---AATCATGAAACCTG-GAGAAA-------AATTGGA--TTAAAA-TCAAAA-TTGTAGGAATTTGTTCAC-ATCGGTAAAACAATTT-TGTCTT---AAATTCT--ACAACAT-AAATTGATTAAACGAAGTTGT--------ATGTTAGT-ATGAAATTTCTCTGTGCTAG-TGTTTTACAA-AAACCTTGTA-ATTTCATCTTTGGCAGAGGTGTTAGTG-AGCA--GAG-GACAGAGA-ATTGAA--------G---GGGGGGGGAC-AAAATACGACA-----------------GGCTACTT-AA-CATTCAGTAGG-AAGTGTGTAA-----GATCTCG-TCTATTTTGTATT-GGAGTGCT-GTTAACAACC-AGTTTCT-GTTATTTAAAA-AATAATTA-AT-CGAA-CA-CAAGA-TGTTTAC-TTACTGACTTGAATGAGATCA--CG-AATTT----A------TCGTT--A--CATTT-----------ACAT-GCC------------ACA--TTT--CTG-CATGACTGTA--T-TACTG-AGATGC-AC-GCCATTTA-TTGCTATT-ATGA-ATTA----AAT---A-G-TT-TG-GTT---G-TA-----C-AAT--GTTC---CG-----------TTTCT-------CT----TT-G----CTTC-GGT----A------------TAA-G---GT-TT-CGTTT-C-----G-TT---------------TT----GA----T----TT---CGTTTCGCACTTaat
gi|20 : -----------TTTCG-------TT----TC-A----TTTC-GG------------------T-A-G---AT-TG-CGTTT-C-----G-TT---------------TT----G
gi|21 : gtaaa---GT-TT-CGTTT-C-----G-TT---------------TC----GA----T----TT---AGTTTTGCACTTcattttacaggtac
gi|22 : --T-TACTG-AGTTGC-TC-GCCATTTA-TTGCTATT-ACAA-ATTA----AAtacaggta
gi|3 : GTGTATATTGT-TTG--TTT-AA-----TAAGATACACTAAT--GCA-TTGGCGCAAAAGTTTATAGATA------TATTAGTTTTGCTAAAACGTGGAAAAGAAAA-CGGACGGGAAATTTAAG--AAT-TACATGT-ATTAT---AATCAT---------------------TAATTGGG--TCATAT-TCAAAA-TTGTAGGAATTTGTTCAC-AGCGGTAAAACAATTT-TACCTT---AAATTCT--ACAGCAT-AAATTGATTAAGCTAAGTTGA--------ATGTTGGT-AAAACATTTCTC---------------ACAACAAACTT-GCA-ATTTCACCATTGACAGAGATGTTAGCG-ATCA--GA----CAGAGTTATTGAA--------G---GGGGG-------AAAT-CGACACAGACCCTTT-TCTCGTGGCTATTTTAA-CATTCAGTACG-AAGTGTGTAA-----GATCTCG-TTGATTTTGTATT-GGAGTGCT-GTTAACAATC-AG-----------TTAAAA-AATTATCA-AT-CAAA-CA-CAAGATTTTTTAC-TTATTGACTTGAATAAGATAA--TG-AA-TA----A------TCGTA--A--CATTT-----------ACA----------------------------TG-TATGACCGTT--T-TACTG-AGATGC-TC-G-CATTTA-TTGCTATT-ATGA-ATTA----AAT---A-A-TT-TG-GTT---G-TA-----C-AAT--GTCC---AG-----------ATTCT-------TT----AT-G----TTTC-TGC----A------------TCA-G---GT-TT-GGTTT-C-----G-GC---------------T-----GG----T----TT---CGTTTCG
gi|3 : T--GTTT---CA-----------TTTCG-------TT----TC-G----TTTC-AG------------------T-A-G---AT-TT-CGTTT-C-----G-AT---------------------------T----TT---GGTTTCGCACTTtttaagtggatttcgtttcgtttttggtgtgtttcatttcgtttcgtttcagtagatttcgtttcgattttggtttcgcactttactgg
gi|4 : gtgtatattgtttgtttaataagatacactaatgcattggcgcaaaagtttatagatatattagttttgctaaaacgtggaaaagaaaacggacgggaaatttaagaattacatgtattataatcattaattgggtcatattcaaaattgtaggaatttgttcacagcggtaaaacaattttaccttaaattctacagcataaattgattaagctaagttgaatgttggtaaaacatttctcacaacaaacttgcaatttcaccattgacagagatgttagcgatcagacagagttattgaaggggggaaatcgacacagacccttttctcgtggctattttaacattcagtacgaagtgtgtaagatctcgttgattttgtattggagtgctgttaacaatcagttaaaaaattatcaatcaaacacaagattttttacttattgacttgaataagataatgaataatcgtaacatttacatgtatgaccgttttactgagatgctcgcatttattgctattatgaattaaataatttggttgtacaatgtccagattctttatgtttctgcatcaggtttggtttcggctggtttcgtttcgtttaagtggatttcgtttcgtttttggtgAATTTT--ACAACAT-AAATTGATTAAGCTAAGCTGG--------ATGTTGGT-ATGAAATCTCTTTGTACTAG-TGTTTTACAA-AAA--------------TCTTTGACAGAGGTGTTAGCT-AGCA--GAGTG-CAGACA-ATTGAAATGGGGGGG---AGGGGGAGACTAAAATATGACACAAGCCCCTTCTCTCGGGGCTATTT-AA-CATTCGGTAGG-AAATGTGTAA-----GATCTAG-TCTATTTTGTATT-GGAGTGCT-GTTAACATTC-AGTCCCT-GTTATTCAAAA-AATAATTA-AT-CAAA-CG-CAAGA-TGTTTAC-TTATTGACTTAAATAAGATCA--CG-AA-TG----G------TCGTT--A--TA-TT-----------ACATCGCC------------ACAACTTC--CTG-TATGAACGTA--T-AACTG-AG-TGCTTC-GCCA-TTA-TTG-TATT-ATAA---TA----AAT---A-G-TT----GTT---GCCA-----C-AAT--GTTCGTTCT-----------CTTTGT------TT----TC-GTCTATTTT-TAT----A------------A-A-G---GT-TC-CGTTTAC-----G-GT---------------TA----GG----T----TT---CGTTTtactgg
gi|5 : A-AATAATTATATGCAAATCA-CAAGA-TGTTTAC-GTAGTGACTT-AATAAGATGAACCGTAATTACTGAG------TTGTT--CGCCATTT-----------AATT-GCTTGATAACATTAAATA--TTT--CTG-CTTG--------T-TAT----AATGT-TC--CCGTTC--TTACTATT-TT----TTTCGGTAAT---A-GGTT-TGCGTTTCGA-TAGGTTTC-ATTTCGTTT---CGGTATAGG----CTTCG-------TT----TC-A----TTTCTGG------------------T-G-G---GT-TTCCGTTT-C-----G-CT---------------TC----GG----TGGGATT---CGTTTCGgtttcgtgtggggttcgtttcgtattggtgggtgttgttatcgatttcggtagaatttcgttcgttcagtttttcgattgtcgcgcacattttacag
gi|5 : -----------TTCCG-------TT----TC-G----CTTC-GGT----G----------------G---GA-TT-CGTTT-C-----G-GG---------------TA----GA----T----TT---CGTTTCGggtagatttcgtttcggttttctatttcgtatgcaaactcttacaagt
gi|6 : aaataattatatgcaaatcacaagatgtttacgtagtgacttaataagatgaaccgtaattactgagttgttcgccatttaattgcttgataacattaaatatttctgcttgttataatgttcccgttcttactatttttttcggtaataggtttgcgtttcgataggtttcatttcgtttcggtataggcttcgtttcatttctggtgggtAA-AATAATTA-TT-CAAA-CATCCAGA-TGTTTAC-GTAGTGACTT-AATAAGATGAC-CGTAATTC----ACTGCAGTTGTTCGC--CATTTAATTGGCTATAACAT-TAA------------ATA--TTT--CTG-CTT----GTA--T--------AATGT-T---CCGTTTT-TCTATATT-GT----TTCGGT-AAT---AGG-TT-TGCGTT-----T------C-GATAGGTTT---CA-----------TTTCG-------TT----TC-G---------GGT----A------------T-A-G---GC-TT-CGTTT-CA----A-TT---------------TC----GG----TGGG-TTTCCCGTTTCGCgttttctatttcgtatgcaaactcttacaagt
gi|6 : ATGACCGTAATT-CACTGCAGTTGT-TC-GCCATTTAATTG--GCT-ATAACATTA----AAT---A-T-TTCTG-CTT---G-TA-----T-AAT--GTTC---CG-----------TTTTT-------CTATA-TT-G----TTTC-GGTA---A------------T-A-G---GT-TTGCGTTT-CGATAGG-TT---------------TC-----A----T----TT---CGTTTCGttcggctgggatttcgtttcggggtagatttcgtttcgtttctatttcgttgcacactttacaag
gi|6 : aaaataattattcaaacatccagatgtttacgtagtgacttaataag--GTTT---CG-----------CTTCGGCTGGGATT----TC-G----TTTC-GGG----G------------T-A-G---AT-TT-CGTTT-C-----G-TT---------------TC----TA----T----TT---CGTTGCACACTTggtataggcttcgtttcaatttcggtgggtttcccgtttcgcttcggctgggatttcgtttcggggtagatttcgtttcgtttctatttcgttgcacactttacaag
gi|7 : aaaataattattcaaacatccagatgtttacgtagtgacttaataagatgaccgtaattcactgcagttgttcgccatttaattggctataacattaaatatttctgcttgtataatgttccgtttttctatattgtttcggtaataggtttgcgtttcgataggtttcatttcgtttcgggtataggcttcgtttcaatttcggtgggtttcccTGTTGCTAAAACGCAGAGCGGAAAA-CGGAATGGAAA-TTAAGGTAAA-TGTATAG-TTAAA---TACCA--AAAACCGTGAAAAAAGTGTTTTATT-----TT--AA-TCAAAA-TCCT---AATTACTTTACAAGCGGTGAAACAATTG-TGTCT------GTTC---------T-AGGTTGATTAATCC---TCG----------TGTCAGTCATGTGATGTC-----A-TAG-CATTTTAAAA-AAACTTTGCGCATTTTATtacaag
gi|8 : -AAAATACGACACGGGTCCTTTCTCTCGGGGCTATTT-AA-CATTCAGTAGG-AAATGTGTAA-----GATCCCG-TCTATTTTGTATT-GGAGTGCT-GTTAACATTC-ATTCTCT-GTTAGTTAAAA-AATAATTA-AT-CAAA-CG-CAAGA-TGTTTACATTAATGAC-TGAATA--ATCA--CG-AATTA----A------TCGTT--A--CATTT-----------ACAT-GCC------------ACA--
gi|9 : aca-----------TTTCG-------TT----TC-G----TTTT-GGT----A----------------G---AT-TT-CGCTT-C-----G-TT---------------TC----TA----T----TT---CGTTTCGCACTTc
gi|9 : cctgtaG-----------TTTCG-------TT----TC-A----TTTC-GGT----A----------------G---AT-TT-CGTTT-C-----G-TT---------------TT----GGTAGAT----TT---CGCTTCGtctaccgaaatgaaacgaaacccaccgaaacgaaacgaaacctaaaagcacaaggtaaaaatcttaagttaacttagatcataatgggacaggggcaattgagtttcagaaatttcagatgggagggtgt
gi|9 : cctgtaaagtgcgaaacgaaatagaaaG-----------TTTCG-------TT----TC-G----TTTC-GG------------------T-G-G---GT-TT-CGTTT-C-----A-TT---------------TC----GGTAGAT----TT---CGTTTCGccaccgaaacgaaacgaaacctaaaagcacaaggtaaaaatcttaagttaacttagatcataatgggacaggggcaattgagtttcagaaatttcagatgggagggtgt
gi|9 : cctgtaaagtgcgaaacgaaatagaaacgaagcgaaatctaccaaaaAAG-TTAACTTAG-ATCAT-A---ATGGGACAGGGGCAATTGAGTTTCAGAAATTTCAGATGGG-AGGGTG--ctaaaagcacaaggtaaaaatcttaagttaacttagatcataatgggacaggggcaattgagtttcagaaatttcagatgggagggtgt
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|17 ): GTGGGTTTCGGGATTTCGGTTAGATTTCGGTTGTTTCGTTTCGTGTTTCGTTTCGATTTTCGATTCTTTCGCACTTACA
Alignments
lowQualScore : 1 1 11111 22222 22 1 1111 111111 11 33333 444444444444444444444 55555555 222222 33333333 111111 222222 222222222 11 222222 11 1 1 2222 111 333333333 1 1111111111 1 11 1111 1 444444444444 333333333333 22222 1 11 1 222222222222 11111 2222222222222222222222222222222 11111111111 1111 1111 111111111111 11 11111111111 1111111 2222222222222222222222 22222222222222222222222222222222
lowQualScore : 0 0 88888 55555 00 0 4444 888888 00 0 33333 0 555555555555555555555 77777777 66 0 0 111111 99999999 8 888888 0 3 888888 0 0 8 3 1 99 77 000000000 00 3 8 1 333333 11 11 8 8 1 3 0 8 0 0000 111 0 8 0 777777777 6 1 0 4444444444 8 88888 5 0 33 8888 0 777777777777 33 8 11 666666666666 8 8 8 00000 8 8 8 1 8 0 1 8 0 5 5 5 5 77 5 5 1 0 1 1 33 0 3 555555555555 00000 7777777777777777777777777777777 66 77 5 00000000000 0 4 2 4 777 4 6 4 2222 4444 777 888 4 8 000000000000 3 11 555 88888888888 5555555 6666 1 3333 1 6666666666666666666666 222 1 3 1 55555 1 55555555555555555555555555555555 333
lowQualScore : . . ..... ..... .. . .... ...... .. . ..... . ..................... ........ .. . . ...... ........ . ...... . . ...... . . . . . .. .. ......... .. . . . ...... .. .. . . . . . . . .... ... . . . ......... . . . .......... . ..... . . .. .... . ............ .. . .. ............ . . . ..... . . . . . . . . . . . . . .. . . . . . . .. . . ............ ..... ............................... .. .. . ........... . . . . ... . . . .... .... ... ... . . ............ . .. ... ........... ....... .... . .... . ...................... ... . . . ..... . ................................ ...
lowQualScore : 0 0 55555 00000 55 0 5555 777777 33 7 77777 7 000000000000000000000 77777777 88 2 8 000000 88888888 8 888888 2 2 888888 8 6 0 2 0 22 77 222222222 66 8 0 0 222222 00 88 0 0 4 8 0 8 0 8888 888 6 0 8 222222222 0 4 8 4444444444 0 88888 6 0 88 8888 0 888888888888 22 0 66 444444444444 0 0 0 00000 0 0 0 4 0 8 4 0 6 7 7 7 7 11 7 7 0 1 4 0 66 0 2 666666666666 88888 6666666666666666666666666666666 99 99 7 44444444444 8 4 2 4 444 4 7 4 7777 1111 000 777 0 0 999999999999 3 88 000 33333333333 4444444 5555 7 5555 6 0000000000000000000000 777 5 1 6 66666 7 66666666666666666666666666666666 000
consensus : AAG-TTAACTTAG-ATCAT-A---ACGGG-----GGCAAC-GAGTTTCAGAAATTTCAGATGGG-AGGGNG--GGGTTGCGTCGTTACAGGTCGGACGTCGGGC-G--ATAACTCGAAACGACGGGGGGTTTCAGTANCTC-----CTGAAGACAAATGTA-----AC-TGCGCATATTGT-T-G--TTT-A------CAAGATGGACTAAT--G-A-TTGGCGCAAAAGTTTATAGATA------TAGTAGTGTTGCTAAAACGTGGAAAAGAAAA-CGGANGGGAAATTTAAG--AAN-TACATGT-TTAAA---AATCATGAAANCCG-GAGAAA----TTTAATTGGA--TTAAAA-TCAAAA-TCGTAGGAATTTGTTCAC-AGCGGTAAAACAATTT-TGTCTT---AAATTCT--ACAACAT-AAATTGATTAAGCTAAGTTGG--------ATGTTGGT-ATGAAATTTCTCTGTACTAG-CGTTTTACAA-AAACTTTGCA-ATTTCATCTTTGGCAGAGGTGTTAGCG-AGCA--GAG-G-CAGAGA-ATTGAA--------G---GGGGGGAGAC-AAAATACGACACGGGCCCTTTCTCTCGGGGCTATTT-AA-CATTCGGTAGG-AAATGTGTAA-----GATCTCG-TCTATTTTGTATT-GGAGTGCT-GTTAACATTC-AGTCCCT-GTTATTTAAAA-AATAATTA-AT-CAAA-CG-CAAGA-TGTTTAC-TTANTGACTTGAATAAGATNA--CG-AATTN----A------TCGTT--A--CATTT-----------ACAT-GCC------------ACA--TTT--CTG-CATGACCGTA--T-TACTG-AGATGC-TC-GCCATTTA-TTGCTATT-ATAA-ATTA----AAT---A-G-TT-TG-GTT---G-TA-----C-AAT--GTTC---CG-----------TTTCG-------TT----TC-G----TTTC-GGT----A------------T-A-G---GT-TT-CGTTT-C-----G-TT---------------TC----GG----T----TT---CGTTTCGCACTT
Reference ( family-74 ) : AAG-TTAACTTAG-ATCAT-A---ACGGG-----GGCAAC-GAGTTTCAGAAATTTCAGATGGG-AGGGNG--GGGTTGCGTCGTTACAGGTCGGACGTCGGGC-G--ATAACTCGAAACGACGGGGGGTTTCAGTANCTC-----CTGAAGACAAATGTA-----AC-TGCGCATATTGT-T-G--TTT-A------CAAGATGGACTAAT--G-A-TTGGCGCAAAAGTTTATAGATA------TAGTAGTGTTGCTAAAACGTGGAAAAGAAAA-CGGANGGGAAATTTAAG--AAN-TACATGT-TTAAA---AATCATGAAANCCG-GAGAAA----TTTAATTGGA--TTAAAA-TCAAAA-TCGTAGGAATTTGTTCAC-AGCGGTAAAACAATTT-TGTCTT---AAATTCT--ACAACAT-AAATTGATTAAGCTAAGTTGG--------ATGTTGGT-ATGAAATTTCTCTGTACTAG-CGTTTTACAA-AAACTTTGCA-ATTTCATCTTTGGCAGAGGTGTTAGCG-AGCA--GAG-G-CAGAGA-ATTGAA--------G---GGGGGGAGAC-AAAATACGACACGGGCCCTTTCTCTCGGGGCTATTT-AA-CATTCGGTAGG-AAATGTGTAA-----GATCTCG-TCTATTTTGTATT-GGAGTGCT-GTTAACATTC-AGTCCCT-GTTATTTAAAA-AATAATTA-AT-CAAA-CG-CAAGA-TGTTTAC-TTANTGACTTGAATAAGATNA--CG-AATTN----A------TCGTT--A--CATTT-----------ACAT-GCC------------ACA--TTT--CTG-CATGACCGTA--T-TACTG-AGATGC-TC-GCCATTTA-TTGCTATT-ATAA-ATTA----AAT---A-G-TT-TG-GTT---G-TA-----C-AAT--GTTC---CG-----------TTTCG-------TT----TC-G----TTTC-GGT----A------------T-A-G---GT-TT-CGTTT-C-----G-TT---------------TC----GG----T----TT---CGTTTCGCACTT
gi|1 : -AATCG----A------TTATT--A--TCTTT-----------ATGT-GGC------------ACC--TTT--C-A-CAGGG----------ATCG-AGATAT-T--ATCATTTA-TTGATATT-AT-G-ATTA----AATATAA-A-CT-TG-GTT---G-TA-----CAAATTGGTTC---TG-----------TT--A-------TT----TCTG----CTTC-AGC----A--------------A-G---AT-TT-
gi|1 : acctgttagtgcgaaaacgaaaatannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaaAAGCTTGACTTAG-ATCATTA---ACGGC-----GGCAA--GAGTTTCAGAAATGTCAAATGCATAGGGAG--GGGGTAAGTCG-----GGTTGGA--TTGGGTTGTTATAGGTCGGGACGTCAGGGA-------TAACT---------AAGACAAATGCA-----AT-T--------TGT-T-C--TTT-ATTACAACAAGATG-ACTAATTGA-A-TTGGCGCAAAAGTT-ATAAATA------TAGTAATATTACTAAAACGTGGAAAATAAAATCCGATGAGAAATCTAAA--AAAATACATGTATTATA---AATCATGAAAACCG-GAGAAA----TTTAATCGTAGTTTAAAAATCAAAAATAGTGGGAATTTGTTCAC-A-TGGTAAAACAATTTATATTTTTTAAAATTCTTTGTCACATTAAATTGATTAAGCTAAGTTGGTATGTAGAATGTTGGTTATATATTTTCTCTGTACAAGGTGTTTTACAA-AAACTTTGTA-ATT-CATCTTTGGCAGAGATGTTAGCGCAGCAAAGGG-G-CAGTGA-ATTGGA--------ATGCGAGGGGAGAC-AAAA-ATAA---------------TCGGGGTTATTT-AAACATTCGGTGGGGAAATGTTCAACTCTTGATCTTGGTCTATTTTGTATTTGAAGTGCTTGTCAA-ATTCCAGTCCCTTGTTATTTAAAACAATAATTA-AT-CAAG-CA-CAAG--TGTTT---TTACT--CT-------GATT----G-AATT-----A------TCGTT--A--TATTT-----------ACAT-GCC------------ACA--CTTTACTGATATGACCGTA--TCTACTG-AGATGC-TTTGCCATTTA-TTGCTATTTATAA-ATTA----AAT---A-G-TT-TG-GTT---A-TA-----C-AAT--GTTC---CGCTCTCTTTATGTTTCGGTGGG--TT----TC-G----TTTT-GATTCGGA------------T-A-G---GT-TT-CGTTT-C-----GTTT---------------TC----TA----T----TT---CGTTagggtaaatgatggggtcaccatttattacaatcaacagttagagaagaagaaaaccggtgtctgaagaaagtaaaaatatcacagaaaacagggcaaatcataaaaggagggggggtgggacacaaagtaaaaatcttaagcttgacttagatcattaacggcggcaagagtttcagaaatgtcaaatgcatagggagggggtaagtcgggttggattgggttgttataggtcgggacgtcagggataactaagacaaatgcaatttgttctttattacaacaagatgactaattgaattggcgcaaaagttataaatatagtaatattactaaaacgtggaaaataaaatccgatgagaaatctaaaaaaatacatgtattataaatcatgaaaaccggagaaatttaatcgtagtttaaaaatcaaaaatagtgggaatttgttcacatggtaaaacaatttatattttttaaaattctttgtcacattaaattgattaagctaagttggtatgtagaatgttggttatatattttctctgtacaaggtgttttacaaaaactttgtaattcatctttggcagagatgttagcgcagcaaaggggcagtgaattggaatgcgaggggagacaaaaataatcggggttatttaaacattcggtggggaaatgttcaactcttgatcttggtctattttgtatttgaagtgcttgtcaaattccagtcccttgttatttaaaacaataattaatcaagcacaagtgtttttactctgattgaattatcgttatatttacatgccacactttactgatatgaccgtatctactgagatgctttgccatttattgctatttataaattaaatagtttggttatacaatgttccgctctctttatgtttcggtgggtttcgttttgattcggataggtttcgtttcgttttctatttcgtt
gi|10 : acctgttagtgcgaaaacgaaaatannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaaaaatcttgctgaagcagaaataacagaaccaatttgtacaaccaagtttatatttaatcataatatcaataaatgataatatctcgatccctgtgaaaggtgccacataaagataataatcgattagggtaaatgatggggtcaccatttattacaatcaacagttagagaagaagaaaaccggtgtctgaagaaagtaaaaatatcacagaaaacagggcaaatcataaaaggagggggggtgggacacaaagtaaaaatctt-TA-----T-AAT--GGTC---TG-----------CTTAT-------TT----TT-G----CTTC-GGT----A------------T-A-A---ATATT-TGCTT-G-----G-TT---------------TCGGTAGG----T----TT---CATTTCG
gi|10 : aatattacatgtataatcTA----AAT---A---TT-TG-CTT---G---------------GTTT---CGGTAGG------TTTCA-------TT----TC-G----TTTC-GGT----A------------T-A-G---GT-TT-CGTTT-C-----G-TT---------------TCGGTGGG----T----TT---CGTTTCGtttcggtataggtttcgtttcgtttcggtgggtttcgtttcgtttttatttcgtttcgcacttta
gi|10 : aatattacatgtataatctataatggtctgcttatttttgcttcggtaG-----------TTTCG-------TT----TC-G----TTTC-GGT----G----------------G---GT-TT-CGTTT-C-----G-TT---------------TT----TA----T----TT---CGTTTCGCACTTtttttatttcgtttcgcacttta
gi|11 : aatattacatgtataatctataatggtctgcttatttttgcttcggtataaatatttgcttggtttcggtaggtttcatttcgtttcggtatagC-----CTACAAACAAATGTATGTATACATGCGCATACTGT-T-GATTTT-A------CAAAATGGACAAAT--G-A-TTGGGACAAATGTTTCTAGATATACATTTAGGAGTGTTGCTTCAATGTGG-ACGGGAAA-TAGAAGGGATATATAAG--AAT-Tta
gi|12 : AG-TTAATTTAGCATCAC-ATAAACGGG-----GGCAGT-GAGTTCCAGAAATTTCAAATGGA-AGGG-G--GGGTTGC----TTACATGTCGGACGTCAGGC-G--AAAACACGAAACAACG
gi|13 : gggtgggggacccaacagtaaaaatcctT---G-TC-----C-AA---GTTT---CG-----------TTTCAGTAGA--TT----TC-G----TTTC-AGT----AGATTTCGTTCGGT-A-G---AT-TT-CGTTT-C-----G-TT---------------TCAGTAGA----T----TT---CGTTCCGcgag
gi|13 : ttgttcacgactccgtgca-----------TTTCG-------TT----TC-G----TTTC-AGT----A----------------G---AT-TT-CGTTC-C-----G-TT---------------TC-----G----T----TT---CGtttcgtttcgcaatttacagg
gi|14 : ttgttcacgactccgtgcatgtccaagtttcgtttcagtagatttcgtttcagtagatttcgttcggtaga-----------TTTCG-------TT----TC-G----TTTC-GCG----G------------T-A-G---AC-TT-CGTTT-C-----G-TTCGGCAGGTTTTTGTTTC----GT----T----TT---CGTTTCGCACTTcaatttacagg
gi|15 : cttaTTC-AGT----G----------------G---AT-TT-CGTTT-C-----G-TT---------------TC----GG----TAGACTT---CGTTTCGtccactgaaa
gi|15 : TTCG-------TT----TC-G----TTTC-GGC----A----------------G---GT-TT-TGTTT-C-----G-TT---------------T-----------------T---CGTTTCGCACTTtttcggcaggttttgtttcgttttcgtttcgcactttacagg
gi|16 : ttcagtggatttcgtttcgtttcggtagacAAATTTAAG--AAT-TACATGT----AATGTAATCAGGAAACCCG-GAGATA----TTTACTTGGA--TTAAAA-TCAAAA-TCGTAGGAATTTGtacagg
gi|18 : -----------TTTTG-------TT----TT-G----TTTC-GGT----A------------G-A-TTTTGT-TT-TGTTT-C-----A-TT---------------TC----TA----T----TT---CGTTTCGCACTT
gi|19 : acctgtaA-ATTA----AAT---A-G-TT-TG-GTT---G-TA-----C-AAT--GTTA---CG-----------TTTCT-------CTTTAATT-G----TTTC-GGT----A------------T-AGG---GT-TT-CGTTT-C-----tacaccgaaacgaa
gi|2 : AAG-TTAACTTAG-ATCAT-A---ACGGG-----GGCAAC-AAGTTTAAAAAATTTCAGATGGG-AGGGGGTTGGGTTGTGTTGTTACAGGTCGGACATCAGG--G--ATAACTCGAAACAACGGGAGGTTTCAGTATTTCTTGCCCTGAAGACAAATGTA--------TGTGCATATTGTAT-G--TTTTA------CAAGATAGACTAAT--G-AATTGGTGCAAAAGTTTATGAATA------TAGTAGTGTTACTAAAACGTGGAAAAGAAAA-CCGATGAGAAATTTAAG--AAC-TACATGT-TTAAG---AATCATGAAACCTG-GAGAAA-------AATTGGA--TTAAAA-TCAAAA-TTGTAGGAATTTGTTCAC-ATCGGTAAAACAATTT-TGTCTT---AAATTCT--ACAACAT-AAATTGATTAAACGAAGTTGT--------ATGTTAGT-ATGAAATTTCTCTGTGCTAG-TGTTTTACAA-AAACCTTGTA-ATTTCATCTTTGGCAGAGGTGTTAGTG-AGCA--GAG-GACAGAGA-ATTGAA--------G---GGGGGGGGAC-AAAATACGACA-----------------GGCTACTT-AA-CATTCAGTAGG-AAGTGTGTAA-----GATCTCG-TCTATTTTGTATT-GGAGTGCT-GTTAACAACC-AGTTTCT-GTTATTTAAAA-AATAATTA-AT-CGAA-CA-CAAGA-TGTTTAC-TTACTGACTTGAATGAGATCA--CG-AATTT----A------TCGTT--A--CATTT-----------ACAT-GCC------------ACA--TTT--CTG-CATGACTGTA--T-TACTG-AGATGC-AC-GCCATTTA-TTGCTATT-ATGA-ATTA----AAT---A-G-TT-TG-GTT---G-TA-----C-AAT--GTTC---CG-----------TTTCT-------CT----TT-G----CTTC-GGT----A------------TAA-G---GT-TT-CGTTT-C-----G-TT---------------TT----GA----T----TT---CGTTTCGCACTTaat
gi|20 : -----------TTTCG-------TT----TC-A----TTTC-GG------------------T-A-G---AT-TG-CGTTT-C-----G-TT---------------TT----G
gi|21 : gtaaa---GT-TT-CGTTT-C-----G-TT---------------TC----GA----T----TT---AGTTTTGCACTTcattttacaggtac
gi|22 : --T-TACTG-AGTTGC-TC-GCCATTTA-TTGCTATT-ACAA-ATTA----AAtacaggta
gi|3 : GTGTATATTGT-TTG--TTT-AA-----TAAGATACACTAAT--GCA-TTGGCGCAAAAGTTTATAGATA------TATTAGTTTTGCTAAAACGTGGAAAAGAAAA-CGGACGGGAAATTTAAG--AAT-TACATGT-ATTAT---AATCAT---------------------TAATTGGG--TCATAT-TCAAAA-TTGTAGGAATTTGTTCAC-AGCGGTAAAACAATTT-TACCTT---AAATTCT--ACAGCAT-AAATTGATTAAGCTAAGTTGA--------ATGTTGGT-AAAACATTTCTC---------------ACAACAAACTT-GCA-ATTTCACCATTGACAGAGATGTTAGCG-ATCA--GA----CAGAGTTATTGAA--------G---GGGGG-------AAAT-CGACACAGACCCTTT-TCTCGTGGCTATTTTAA-CATTCAGTACG-AAGTGTGTAA-----GATCTCG-TTGATTTTGTATT-GGAGTGCT-GTTAACAATC-AG-----------TTAAAA-AATTATCA-AT-CAAA-CA-CAAGATTTTTTAC-TTATTGACTTGAATAAGATAA--TG-AA-TA----A------TCGTA--A--CATTT-----------ACA----------------------------TG-TATGACCGTT--T-TACTG-AGATGC-TC-G-CATTTA-TTGCTATT-ATGA-ATTA----AAT---A-A-TT-TG-GTT---G-TA-----C-AAT--GTCC---AG-----------ATTCT-------TT----AT-G----TTTC-TGC----A------------TCA-G---GT-TT-GGTTT-C-----G-GC---------------T-----GG----T----TT---CGTTTCG
gi|3 : T--GTTT---CA-----------TTTCG-------TT----TC-G----TTTC-AG------------------T-A-G---AT-TT-CGTTT-C-----G-AT---------------------------T----TT---GGTTTCGCACTTtttaagtggatttcgtttcgtttttggtgtgtttcatttcgtttcgtttcagtagatttcgtttcgattttggtttcgcactttactgg
gi|4 : gtgtatattgtttgtttaataagatacactaatgcattggcgcaaaagtttatagatatattagttttgctaaaacgtggaaaagaaaacggacgggaaatttaagaattacatgtattataatcattaattgggtcatattcaaaattgtaggaatttgttcacagcggtaaaacaattttaccttaaattctacagcataaattgattaagctaagttgaatgttggtaaaacatttctcacaacaaacttgcaatttcaccattgacagagatgttagcgatcagacagagttattgaaggggggaaatcgacacagacccttttctcgtggctattttaacattcagtacgaagtgtgtaagatctcgttgattttgtattggagtgctgttaacaatcagttaaaaaattatcaatcaaacacaagattttttacttattgacttgaataagataatgaataatcgtaacatttacatgtatgaccgttttactgagatgctcgcatttattgctattatgaattaaataatttggttgtacaatgtccagattctttatgtttctgcatcaggtttggtttcggctggtttcgtttcgtttaagtggatttcgtttcgtttttggtgAATTTT--ACAACAT-AAATTGATTAAGCTAAGCTGG--------ATGTTGGT-ATGAAATCTCTTTGTACTAG-TGTTTTACAA-AAA--------------TCTTTGACAGAGGTGTTAGCT-AGCA--GAGTG-CAGACA-ATTGAAATGGGGGGG---AGGGGGAGACTAAAATATGACACAAGCCCCTTCTCTCGGGGCTATTT-AA-CATTCGGTAGG-AAATGTGTAA-----GATCTAG-TCTATTTTGTATT-GGAGTGCT-GTTAACATTC-AGTCCCT-GTTATTCAAAA-AATAATTA-AT-CAAA-CG-CAAGA-TGTTTAC-TTATTGACTTAAATAAGATCA--CG-AA-TG----G------TCGTT--A--TA-TT-----------ACATCGCC------------ACAACTTC--CTG-TATGAACGTA--T-AACTG-AG-TGCTTC-GCCA-TTA-TTG-TATT-ATAA---TA----AAT---A-G-TT----GTT---GCCA-----C-AAT--GTTCGTTCT-----------CTTTGT------TT----TC-GTCTATTTT-TAT----A------------A-A-G---GT-TC-CGTTTAC-----G-GT---------------TA----GG----T----TT---CGTTTtactgg
gi|5 : A-AATAATTATATGCAAATCA-CAAGA-TGTTTAC-GTAGTGACTT-AATAAGATGAACCGTAATTACTGAG------TTGTT--CGCCATTT-----------AATT-GCTTGATAACATTAAATA--TTT--CTG-CTTG--------T-TAT----AATGT-TC--CCGTTC--TTACTATT-TT----TTTCGGTAAT---A-GGTT-TGCGTTTCGA-TAGGTTTC-ATTTCGTTT---CGGTATAGG----CTTCG-------TT----TC-A----TTTCTGG------------------T-G-G---GT-TTCCGTTT-C-----G-CT---------------TC----GG----TGGGATT---CGTTTCGgtttcgtgtggggttcgtttcgtattggtgggtgttgttatcgatttcggtagaatttcgttcgttcagtttttcgattgtcgcgcacattttacag
gi|5 : -----------TTCCG-------TT----TC-G----CTTC-GGT----G----------------G---GA-TT-CGTTT-C-----G-GG---------------TA----GA----T----TT---CGTTTCGggtagatttcgtttcggttttctatttcgtatgcaaactcttacaagt
gi|6 : aaataattatatgcaaatcacaagatgtttacgtagtgacttaataagatgaaccgtaattactgagttgttcgccatttaattgcttgataacattaaatatttctgcttgttataatgttcccgttcttactatttttttcggtaataggtttgcgtttcgataggtttcatttcgtttcggtataggcttcgtttcatttctggtgggtAA-AATAATTA-TT-CAAA-CATCCAGA-TGTTTAC-GTAGTGACTT-AATAAGATGAC-CGTAATTC----ACTGCAGTTGTTCGC--CATTTAATTGGCTATAACAT-TAA------------ATA--TTT--CTG-CTT----GTA--T--------AATGT-T---CCGTTTT-TCTATATT-GT----TTCGGT-AAT---AGG-TT-TGCGTT-----T------C-GATAGGTTT---CA-----------TTTCG-------TT----TC-G---------GGT----A------------T-A-G---GC-TT-CGTTT-CA----A-TT---------------TC----GG----TGGG-TTTCCCGTTTCGCgttttctatttcgtatgcaaactcttacaagt
gi|6 : ATGACCGTAATT-CACTGCAGTTGT-TC-GCCATTTAATTG--GCT-ATAACATTA----AAT---A-T-TTCTG-CTT---G-TA-----T-AAT--GTTC---CG-----------TTTTT-------CTATA-TT-G----TTTC-GGTA---A------------T-A-G---GT-TTGCGTTT-CGATAGG-TT---------------TC-----A----T----TT---CGTTTCGttcggctgggatttcgtttcggggtagatttcgtttcgtttctatttcgttgcacactttacaag
gi|6 : aaaataattattcaaacatccagatgtttacgtagtgacttaataag--GTTT---CG-----------CTTCGGCTGGGATT----TC-G----TTTC-GGG----G------------T-A-G---AT-TT-CGTTT-C-----G-TT---------------TC----TA----T----TT---CGTTGCACACTTggtataggcttcgtttcaatttcggtgggtttcccgtttcgcttcggctgggatttcgtttcggggtagatttcgtttcgtttctatttcgttgcacactttacaag
gi|7 : aaaataattattcaaacatccagatgtttacgtagtgacttaataagatgaccgtaattcactgcagttgttcgccatttaattggctataacattaaatatttctgcttgtataatgttccgtttttctatattgtttcggtaataggtttgcgtttcgataggtttcatttcgtttcgggtataggcttcgtttcaatttcggtgggtttcccTGTTGCTAAAACGCAGAGCGGAAAA-CGGAATGGAAA-TTAAGGTAAA-TGTATAG-TTAAA---TACCA--AAAACCGTGAAAAAAGTGTTTTATT-----TT--AA-TCAAAA-TCCT---AATTACTTTACAAGCGGTGAAACAATTG-TGTCT------GTTC---------T-AGGTTGATTAATCC---TCG----------TGTCAGTCATGTGATGTC-----A-TAG-CATTTTAAAA-AAACTTTGCGCATTTTATtacaag
gi|8 : -AAAATACGACACGGGTCCTTTCTCTCGGGGCTATTT-AA-CATTCAGTAGG-AAATGTGTAA-----GATCCCG-TCTATTTTGTATT-GGAGTGCT-GTTAACATTC-ATTCTCT-GTTAGTTAAAA-AATAATTA-AT-CAAA-CG-CAAGA-TGTTTACATTAATGAC-TGAATA--ATCA--CG-AATTA----A------TCGTT--A--CATTT-----------ACAT-GCC------------ACA--
gi|9 : aca-----------TTTCG-------TT----TC-G----TTTT-GGT----A----------------G---AT-TT-CGCTT-C-----G-TT---------------TC----TA----T----TT---CGTTTCGCACTTc
gi|9 : cctgtaG-----------TTTCG-------TT----TC-A----TTTC-GGT----A----------------G---AT-TT-CGTTT-C-----G-TT---------------TT----GGTAGAT----TT---CGCTTCGtctaccgaaatgaaacgaaacccaccgaaacgaaacgaaacctaaaagcacaaggtaaaaatcttaagttaacttagatcataatgggacaggggcaattgagtttcagaaatttcagatgggagggtgt
gi|9 : cctgtaaagtgcgaaacgaaatagaaaG-----------TTTCG-------TT----TC-G----TTTC-GG------------------T-G-G---GT-TT-CGTTT-C-----A-TT---------------TC----GGTAGAT----TT---CGTTTCGccaccgaaacgaaacgaaacctaaaagcacaaggtaaaaatcttaagttaacttagatcataatgggacaggggcaattgagtttcagaaatttcagatgggagggtgt
gi|9 : cctgtaaagtgcgaaacgaaatagaaacgaagcgaaatctaccaaaaAAG-TTAACTTAG-ATCAT-A---ATGGGACAGGGGCAATTGAGTTTCAGAAATTTCAGATGGG-AGGGTG--ctaaaagcacaaggtaaaaatcttaagttaacttagatcataatgggacaggggcaattgagtttcagaaatttcagatgggagggtgt
blockSeqs : . C ATAA ACAGG TT . GGTT TGTTGT CG CG GTTTCAGTATTTCTTGCCCTG TGTATACA GC TGAT TA G GAA T TACATT . A A GT T AATGT GG C T T AGTGTT . AA . . C A A T . T T . T C A TGTGCTAGT C TGCGC T . . GGA T ATGGGGGGG GG T TA CAAGCCCCTTCT T . . . . . . A . T . . T G T AT T A C G A C AC T T CACTGCAG CGC AATTGCTTGATAACATTAA AC TA A ACCGTAATTC C A T TTG A C T AACA CGGT . GG C C TCGATAGGTTT . TC GTT CTCTCTTTATG GCTGGGA TTAA . TCTA T TAGATTTCGTTCGGTA TTT A C A GATAG . CGGCAGGTTTTTGTTTCGTT TCC
blockSeqs : . . A . T . TG CT CA G . GT ATG AA G GCA T . . C T . T TTAAG TG C . A TT . AA . . T A . G . T T . A . A TGTACTAGT . TGTA T . . GTG . G GA . TA CGGGTCCTTTCT . . . . . . . A . C . . . . . A . . T G A A C T T ACTGAG CGC AATTGGCTATAACATTAA . . . ACCGTATCT . A . CG . C . AAA GGT . GG . C GCCA . AG . GTATAGG GTGGG ATA . . . TTCGGATA . . G . A . TCGGTAGGT .
blockSeqs : . . A . C . G GT TTG A C GA T . . G C . C ATTAT T A . A . . AT . . T A . G . . T . G . A ATAGC . GCA T . . . . G . . TA CAGACCCTTTT . . . . . . . T . T . . . . . A . . T A A C . . T TA A ACATCGCC . . . ACTGTATT . T . CG . C . GAA . . G . . ATA . . . GTAGG GTAGA . . . . TATAG . . . . . . TCGGTGGGT .
blockSeqs : . G A . T TTAAA . . . . . . . . . C . . . . . T . . . . . T . . . . . . . . T . . . . . . . G . . G G A G . . T AA A ACATGCC . . . ACCGTTTT . A . CG . C . AAA . . G . . GTC . . . . T . . . . TATAA . . . . . . TCAGTAGAT .
blockSeqs : . A . . . . A . . G . A G . . T GG A ACATGCC . . . AACGTATA . A . CG . C . GAA . . G . . GTA . . . . . . . . . CATCA . . . . . . TCGGTAGAC .
blockSeqs : . . . . G . . A . . C . . . AA A ACATGCC . . . GTAT . A . CG . A . AA . . A . . GTA . . . . . . . . . TAATA . . . . . . TCGGTGGGA .
blockSeqs : . . A A ACA . TT . T . C . . . . . . G . . GTA . . . . . . . . . TATA . . . . . . TTGGTAGAT .
blockSeqs : . . . . . . . . . . T . . GTA . . . . . . . . . TATA . . . . . . TCGGTAGAT .
blockSeqs : . . . . . G . . . . . . . . . GGTA . . . . . . TCGGTGGG .
blockSeqs : . T . . . . . . . . . TAGA . . . . . . TTTAT .
blockSeqs : . . . . . . . . . TAAA . . . . . . TCTAT .
blockSeqs : . . . . . . . . TATA . . . . . . TTGAT .
blockSeqs : . . . . . . . . GGTA . . . . . . TCGAT .
blockSeqs : . . . . . . TG . . . . . . TAGGT .
blockSeqs : . . . . . . TA . . . . . . TAGAT .
blockSeqs : . . . . . . TG . . . . . . TCTAT .
blockSeqs : . . . . . . CA . . . . . . TCTAT .
blockSeqs : . . . . . . TA . . . . . . TCGT .
blockSeqs : . . . . . . TA . . . . . . TGGT .
blockSeqs : . . . . . . TG . . . . . . TCAT .
blockSeqs : . . . . . . TG . . . . . . T .
blockSeqs : . . . . . . TA . . . . . . T .
blockSeqs : . . . . . TA . . . . . .
blockSeqs : . TG . . . . .
blockSeqs : . . .
blockSeqCons : T* NTNAN**** ****** ** T** N******** GTAGC***** TA CGGCCCTTCT** ***** ACCGTATT*** CG* AAA* *** ** TATA******************
originalCons : AAG-TTAACTTAG-ATCAT-A---ACGGG-----GGCAAC-GAGTTTCAGAAATTTCAGATGGG-AGGGNG--GGGTTGCGTCGTTACAGGTCGGACGTCGGGC-G--ATAACTCGAAACGACGGGGGGTTTCAGTANCTC-----CTGAAGACAAATGTA-----AC-TGCGCATATTGT-T-G--TTT-A------CAAGATGGACTAAT--G-A-TTGGCGCAAAAGTTTATAGATA------TAGTAGTGTTGCTAAAACGTGGAAAAGAAAA-CGGANGGGAAATTTAAG--AAN-TACATGT-TTAAA---AATCATGAAANCCG-GAGAAA----TTTAATTGGA--TTAAAA-TCAAAA-TCGTAGGAATTTGTTCAC-AGCGGTAAAACAATTT-TGTCTT---AAATTCT--ACAACAT-AAATTGATTAAGCTAAGTTGG--------ATGTTGGT-ATGAAATTTCTCTGTACTAG-CGTTTTACAA-AAACTTTGCA-ATTTCATCTTTGGCAGAGGTGTTAGCG-AGCA--GAG-G-CAGAGA-ATTGAA--------G---GGGGGGAGAC-AAAATACGACACGGGCCCTTTCTCTCGGGGCTATTT-AA-CATTCGGTAGG-AAATGTGTAA-----GATCTCG-TCTATTTTGTATT-GGAGTGCT-GTTAACATTC-AGTCCCT-GTTATTTAAAA-AATAATTA-AT-CAAA-CG-CAAGA-TGTTTAC-TTANTGACTTGAATAAGATNA--CG-AATTN----A------TCGTT--A--CATTT-----------ACAT-GCC------------ACA--TTT--CTG-CATGACCGTA--T-TACTG-AGATGC-TC-GCCATTTA-TTGCTATT-ATAA-ATTA----AAT---A-G-TT-TG-GTT---G-TA-----C-AAT--GTTC---CG-----------TTTCG-------TT----TC-G----TTTC-GGT----A------------T-A-G---GT-TT-CGTTT-C-----G-TT---------------TC----GG----T----TT---CGTTTCGCACTT
finalCons : AAG-TTAACTTAG-ATCAT-A---ACGGG-----GGCAAC-GAGTTTCAGAAATTTCAGATGGG-AGGGNG--GGGTTGCGTCGTTACAGGTCGGACGTCGGGC-G--ATAACTCGAAACGACGGGGGGTTTCAGTANCTC-----CTGAAGACAAATGTA-----AC-TGCGCATATTGT-T-G--TTT-A------CAAGATGGACTAAT--G-A-TTGGCGCAAAAGTTTATAGATA------TAGTAGTGTTGCTAAAACGTGGAAAAGAAAA-CGGANGGGAAATTTAAG--AAT-TACATGTNTNAN----AATCATGAAANCCG-GAGAAA------TAATTGGA--TTAAAA-TCAAAA-TCGTAGGAATTTGTTCAC-AGCGGTAAAACAATTT-TGTCTT---AAATTCT--ACAACAT-AAATTGATTAAGCTAAGTTGN--------ATGTTGGT-ATGAAATTTCTCGTAGC-----GTTTTACAA-AAACTTTGCA-ATTTCATCTTTGGCAGAGGTGTTAGCG-AGCA--GAG-G-CAGAGA-ATTGAA--------G---GGGGGGAGAC-AAAATACGACACGGCCCTTCT--CTCGGGGCTATTT-AA-CATTCGGTAGG-AAATGTGTAA-----GATCTCG-TCTATTTTGTATT-GGAGTGCT-GTTAACATTC-AGTCCCT-GTTATTTAAAA-AATAATTA-AT-CAAA-CG-CAAGA-TGTTTAC-TTANTGACTTGAATAAGATNA--CG-AATTN----A------TCGTT--A--CATTT-----------ACAT-GCC------------ACA--TTT--CTG-CATGACCGTATT---ACTG-AGATGC-TCG-CCATTTA-TTGCTATT-ATAAA-TTA----AAT---A-G-TT-TG-GTT---G-TA-----C-AAT--GTTC---CG-----------TTTCG-------TT----TC-G----TTTC-GGTATA------------------G---GT-TT-CGTTT-C-----G-TT---------------TC----GG----T----TT---CGTTTCGCACTT
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|17 ): GTGGGTTTCGGGATTTCGGTTAGATTTCGGTTGTTTCGTTTCGTGTTTCGTTTCGATTTTCGATTCTTTCGCACTTACA
Alignments
lowQualScore : 1 1 11111 22222 22 1 1111 111111 11 33333 444444444444444444444 55555555 222222 33333333 111111 222222 1111 11 222 1111111 1 1 2222 111 333333333 1 66666666666 1 11 1111 1 444444444444 55555555555555 22222 1 11 1 222222222222 11111 2222222222222222222222222222222 11111111111 1111 1111 111111111111 11 11111111111 1111111 2222222222222222222222 22222222222222222222222222222222
lowQualScore : 0 0 88888 55555 00 0 4444 888888 00 0 33333 0 555555555555555555555 77777777 66 0 0 111111 99999999 8 888888 0 3 888888 0 0 8 3 1 88 5555 1 1 8 8 00 3 5 1 888 9999999 1 8 8 1 3 0 8 0 0000 111 0 8 0 777777777 6 1 0 33333333333 4 8 8 888 5 0 33 8888 0 777777777777 33 8 11 11111111111111 8 8 8 00000 8 8 8 1 8 0 1 8 0 5 5 5 5 77 5 5 1 0 1 1 33 0 3 555555555555 00000 7777777777777777777777777777777 66 77 5 00000000000 0 4 2 4 777 4 6 4 2222 4444 777 888 4 8 000000000000 3 11 555 88888888888 5555555 6666 1 3333 1 6666666666666666666666 222 1 3 1 55555 1 55555555555555555555555555555555 333
lowQualScore : . . ..... ..... .. . .... ...... .. . ..... . ..................... ........ .. . . ...... ........ . ...... . . ...... . . . . . .. .... . . . . .. . . . ... ....... . . . . . . . . .... ... . . . ......... . . . ........... . . . ... . . .. .... . ............ .. . .. .............. . . . ..... . . . . . . . . . . . . . .. . . . . . . .. . . ............ ..... ............................... .. .. . ........... . . . . ... . . . .... .... ... ... . . ............ . .. ... ........... ....... .... . .... . ...................... ... . . . ..... . ................................ ...
lowQualScore : 0 0 55555 00000 55 0 5555 777777 33 7 77777 7 000000000000000000000 77777777 88 2 8 000000 88888888 8 888888 2 2 888888 8 6 0 2 0 55 0000 0 0 0 0 66 8 6 0 000 0000000 4 0 0 4 8 0 8 0 8888 888 6 0 8 888888888 0 4 8 88888888888 6 0 6 222 6 0 88 8888 0 888888888888 22 0 66 44444444444444 0 0 0 00000 0 0 0 4 0 8 4 0 6 7 7 7 7 11 7 7 0 1 4 0 66 0 2 666666666666 88888 6666666666666666666666666666666 99 99 7 44444444444 8 4 2 4 444 4 7 4 7777 1111 000 777 0 0 999999999999 3 88 000 33333333333 4444444 5555 7 5555 6 0000000000000000000000 777 5 1 6 66666 7 66666666666666666666666666666666 000
consensus : AAG-TTAACTTAG-ATCAT-A---ACGGG-----GGCAAC-GAGTTTCAGAAATTTCAGATGGG-AGGGNG--GGGTTGCGTCGTTACAGGTCGGACGTCGGGC-G--ATAACTCGAAACGACGGGGGGTTTCAGTANCTC-----CTGAAGACAAATGTA-----AC-TGCGCATATTGT-T-G--TTT-A------CAAGATGGACTAAT--G-A-TTGGCGCAAAAGTTTATAGATA------TAGTAGTGTTGCTAAAACGTGGAAAAGAAAA-CGGANGGGAAATTTAAGAAT-TACATGT---ATTATA-A-TCATGAAANCCGGAGAAATTTAATTG---GA--TTAAAA-TCAAAA-TCGTAGGAATTTGTTCAC-AGCGGTAAAACAATTT-TGTCTT---AAATTCT--ACAACAT-AAATTGATTAAGCTAAGTTGG--------ATGTTGGT-ATGAAATTTCTCTG---TAC-A-GCGTTTTACAA-AAACTTTGCA-ATTTCATCTTTGGCAGAGGTGTTAGCG-AGCA--GAG-G-CAGAG-AATTGAA--------G---GGGGGGAGAC-AAAATACGACACA-G---CCCTTCTCTCGGGGCTA-TTTAA-CATTCGGTAGG-AAATGTGTAA-----GATCTCG-TCTATTTTGTATT-GGAGTGCT-GTTAACATTC-AGTCCCT-GTTATTTAAAA-AATAATTA-AT-CAAA-CG-CAAGA-TGTTTAC-TTANTGACTTGAATAAGATNA--CG-AATTN----A------TCGTT--A--CATTT-----------ACAT-GCC------------ACA--TTT--CTG-CATGACCGTA--T-TACTG-AGATGC-TC-GCCATTTA-TTGCTATT-ATAA-ATTA----AAT---A-G-TT-TG-GTT---G-TA-----C-AAT--GTTC---CG-----------TTTCG-------TT----TC-G----TTTC-GGT----A------------T-A-G---GT-TT-CGTTT-C-----G-TT---------------TC----GG----T----TT---CGTTTCGCACTT
Reference ( family-74 ) : AAG-TTAACTTAG-ATCAT-A---ACGGG-----GGCAAC-GAGTTTCAGAAATTTCAGATGGG-AGGGNG--GGGTTGCGTCGTTACAGGTCGGACGTCGGGC-G--ATAACTCGAAACGACGGGGGGTTTCAGTANCTC-----CTGAAGACAAATGTA-----AC-TGCGCATATTGT-T-G--TTT-A------CAAGATGGACTAAT--G-A-TTGGCGCAAAAGTTTATAGATA------TAGTAGTGTTGCTAAAACGTGGAAAAGAAAA-CGGANGGGAAATTTAAGAAT-TACATGT---NTNANA-A-TCATGAAANCCGGAGAAAT--AATTG---GA--TTAAAA-TCAAAA-TCGTAGGAATTTGTTCAC-AGCGGTAAAACAATTT-TGTCTT---AAATTCT--ACAACAT-AAATTGATTAAGCTAAGTTGN--------ATGTTGGT-ATGAAATTTCTC-G---TA----GCGTTTTACAA-AAACTTTGCA-ATTTCATCTTTGGCAGAGGTGTTAGCG-AGCA--GAG-G-CAGAG-AATTGAA--------G---GGGGGGAGAC-AAAATACGACAC--GG--CCCTTCTCTCGGGGCTA-TTTAA-CATTCGGTAGG-AAATGTGTAA-----GATCTCG-TCTATTTTGTATT-GGAGTGCT-GTTAACATTC-AGTCCCT-GTTATTTAAAA-AATAATTA-AT-CAAA-CG-CAAGA-TGTTTAC-TTANTGACTTGAATAAGATNA--CG-AATTN----A------TCGTT--A--CATTT-----------ACAT-GCC------------ACA--TTT--CTG-CATGACCGTA--T-TACTG-AGATGC-TC-GCCATTTA-TTGCTATT-ATAA-ATTA----AAT---A-G-TT-TG-GTT---G-TA-----C-AAT--GTTC---CG-----------TTTCG-------TT----TC-G----TTTC-GGT----A------------T-A-G---GT-TT-CGTTT-C-----G-TT---------------TC----GG----T----TT---CGTTTCGCACTT
gi|1 : -AATCG----A------TTATT--A--TCTTT-----------ATGT-GGC------------ACC--TTT--C-A-CAGGG----------ATCG-AGATAT-T--ATCATTTA-TTGATATT-AT-G-ATTA----AATATAA-A-CT-TG-GTT---G-TA-----CAAATTGGTTC---TG-----------TT--A-------TT----TCTG----CTTC-AGC----A--------------A-G---AT-TT-
gi|1 : acctgttagtgcgaaaacgaaaatannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaaAAGCTTGACTTAG-ATCATTA---ACGGC-----GGCAA--GAGTTTCAGAAATGTCAAATGCATAGGGAG--GGGGTAAGTCG-----GGTTGGA--TTGGGTTGTTATAGGTCGGGACGTCAGGGA-------TAACT---------AAGACAAATGCA-----AT-T--------TGT-T-C--TTT-ATTACAACAAGATG-ACTAATTGA-A-TTGGCGCAAAAGTT-ATAAATA------TAGTAATATTACTAAAACGTGGAAAATAAAATCCGATGAGAAATCTAAAAAAATACATGT---ATTATA-AATCATGAAAACCGGAGAAATTTAATCG---TAGTTTAAAAATCAAAAATAGTGGGAATTTGTTCAC-A-TGGTAAAACAATTTATATTTTTTAAAATTCTTTGTCACATTAAATTGATTAAGCTAAGTTGGTATGTAGAATGTTGGTTATATATTTTCTCTG---TACAAGGTGTTTTACAA-AAACTTTGTA-ATT-CATCTTTGGCAGAGATGTTAGCGCAGCAAAGGG-G-CAGTG-AATTGGA--------ATGCGAGGGGAGAC-AAAA-ATAA-----------------TCGGGGTTA-TTTAAACATTCGGTGGGGAAATGTTCAACTCTTGATCTTGGTCTATTTTGTATTTGAAGTGCTTGTCAA-ATTCCAGTCCCTTGTTATTTAAAACAATAATTA-AT-CAAG-CA-CAAG--TGTTT---TTACT--CT-------GATT----G-AATT-----A------TCGTT--A--TATTT-----------ACAT-GCC------------ACA--CTTTACTGATATGACCGTA--TCTACTG-AGATGC-TTTGCCATTTA-TTGCTATTTATAA-ATTA----AAT---A-G-TT-TG-GTT---A-TA-----C-AAT--GTTC---CGCTCTCTTTATGTTTCGGTGGG--TT----TC-G----TTTT-GATTCGGA------------T-A-G---GT-TT-CGTTT-C-----GTTT---------------TC----TA----T----TT---CGTTagggtaaatgatggggtcaccatttattacaatcaacagttagagaagaagaaaaccggtgtctgaagaaagtaaaaatatcacagaaaacagggcaaatcataaaaggagggggggtgggacacaaagtaaaaatcttaagcttgacttagatcattaacggcggcaagagtttcagaaatgtcaaatgcatagggagggggtaagtcgggttggattgggttgttataggtcgggacgtcagggataactaagacaaatgcaatttgttctttattacaacaagatgactaattgaattggcgcaaaagttataaatatagtaatattactaaaacgtggaaaataaaatccgatgagaaatctaaaaaaatacatgtattataaatcatgaaaaccggagaaatttaatcgtagtttaaaaatcaaaaatagtgggaatttgttcacatggtaaaacaatttatattttttaaaattctttgtcacattaaattgattaagctaagttggtatgtagaatgttggttatatattttctctgtacaaggtgttttacaaaaactttgtaattcatctttggcagagatgttagcgcagcaaaggggcagtgaattggaatgcgaggggagacaaaaataatcggggttatttaaacattcggtggggaaatgttcaactcttgatcttggtctattttgtatttgaagtgcttgtcaaattccagtcccttgttatttaaaacaataattaatcaagcacaagtgtttttactctgattgaattatcgttatatttacatgccacactttactgatatgaccgtatctactgagatgctttgccatttattgctatttataaattaaatagtttggttatacaatgttccgctctctttatgtttcggtgggtttcgttttgattcggataggtttcgtttcgttttctatttcgtt
gi|10 : acctgttagtgcgaaaacgaaaatannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaaaaatcttgctgaagcagaaataacagaaccaatttgtacaaccaagtttatatttaatcataatatcaataaatgataatatctcgatccctgtgaaaggtgccacataaagataataatcgattagggtaaatgatggggtcaccatttattacaatcaacagttagagaagaagaaaaccggtgtctgaagaaagtaaaaatatcacagaaaacagggcaaatcataaaaggagggggggtgggacacaaagtaaaaatctt-TA-----T-AAT--GGTC---TG-----------CTTAT-------TT----TT-G----CTTC-GGT----A------------T-A-A---ATATT-TGCTT-G-----G-TT---------------TCGGTAGG----T----TT---CATTTCG
gi|10 : aatattacatgtataatcTA----AAT---A---TT-TG-CTT---G---------------GTTT---CGGTAGG------TTTCA-------TT----TC-G----TTTC-GGT----A------------T-A-G---GT-TT-CGTTT-C-----G-TT---------------TCGGTGGG----T----TT---CGTTTCGtttcggtataggtttcgtttcgtttcggtgggtttcgtttcgtttttatttcgtttcgcacttta
gi|10 : aatattacatgtataatctataatggtctgcttatttttgcttcggtaG-----------TTTCG-------TT----TC-G----TTTC-GGT----G----------------G---GT-TT-CGTTT-C-----G-TT---------------TT----TA----T----TT---CGTTTCGCACTTtttttatttcgtttcgcacttta
gi|11 : aatattacatgtataatctataatggtctgcttatttttgcttcggtataaatatttgcttggtttcggtaggtttcatttcgtttcggtatagC-----CTACAAACAAATGTATGTATACATGCGCATACTGT-T-GATTTT-A------CAAAATGGACAAAT--G-A-TTGGGACAAATGTTTCTAGATATACATTTAGGAGTGTTGCTTCAATGTGG-ACGGGAAA-TAGAAGGGATATATAAGAAT-Tta
gi|12 : AG-TTAATTTAGCATCAC-ATAAACGGG-----GGCAGT-GAGTTCCAGAAATTTCAAATGGA-AGGG-G--GGGTTGC----TTACATGTCGGACGTCAGGC-G--AAAACACGAAACAACG
gi|13 : gggtgggggacccaacagtaaaaatcctT---G-TC-----C-AA---GTTT---CG-----------TTTCAGTAGA--TT----TC-G----TTTC-AGT----AGATTTCGTTCGGT-A-G---AT-TT-CGTTT-C-----G-TT---------------TCAGTAGA----T----TT---CGTTCCGcgag
gi|13 : ttgttcacgactccgtgca-----------TTTCG-------TT----TC-G----TTTC-AGT----A----------------G---AT-TT-CGTTC-C-----G-TT---------------TC-----G----T----TT---CGtttcgtttcgcaatttacagg
gi|14 : ttgttcacgactccgtgcatgtccaagtttcgtttcagtagatttcgtttcagtagatttcgttcggtaga-----------TTTCG-------TT----TC-G----TTTC-GCG----G------------T-A-G---AC-TT-CGTTT-C-----G-TTCGGCAGGTTTTTGTTTC----GT----T----TT---CGTTTCGCACTTcaatttacagg
gi|15 : cttaTTC-AGT----G----------------G---AT-TT-CGTTT-C-----G-TT---------------TC----GG----TAGACTT---CGTTTCGtccactgaaa
gi|15 : TTCG-------TT----TC-G----TTTC-GGC----A----------------G---GT-TT-TGTTT-C-----G-TT---------------T-----------------T---CGTTTCGCACTTtttcggcaggttttgtttcgttttcgtttcgcactttacagg
gi|16 : ttcagtggatttcgtttcgtttcggtagacAAATTTAAGAAT-TACATGT---AATGTA-A-TCAGGAAACCCGGAGATATTTACTTG---GA--TTAAAA-TCAAAA-TCGTAGGAATTTGtacagg
gi|18 : -----------TTTTG-------TT----TT-G----TTTC-GGT----A------------G-A-TTTTGT-TT-TGTTT-C-----A-TT---------------TC----TA----T----TT---CGTTTCGCACTT
gi|19 : acctgtaA-ATTA----AAT---A-G-TT-TG-GTT---G-TA-----C-AAT--GTTA---CG-----------TTTCT-------CTTTAATT-G----TTTC-GGT----A------------T-AGG---GT-TT-CGTTT-C-----tacaccgaaacgaa
gi|2 : AAG-TTAACTTAG-ATCAT-A---ACGGG-----GGCAAC-AAGTTTAAAAAATTTCAGATGGG-AGGGGGTTGGGTTGTGTTGTTACAGGTCGGACATCAGG--G--ATAACTCGAAACAACGGGAGGTTTCAGTATTTCTTGCCCTGAAGACAAATGTA--------TGTGCATATTGTAT-G--TTTTA------CAAGATAGACTAAT--G-AATTGGTGCAAAAGTTTATGAATA------TAGTAGTGTTACTAAAACGTGGAAAAGAAAA-CCGATGAGAAATTTAAGAAC-TACATGT---TTAAGA-A-TCATGAAACCTGGAGAAA---AATTG---GA--TTAAAA-TCAAAA-TTGTAGGAATTTGTTCAC-ATCGGTAAAACAATTT-TGTCTT---AAATTCT--ACAACAT-AAATTGATTAAACGAAGTTGT--------ATGTTAGT-ATGAAATTTCTCTGTGCTA----GTGTTTTACAA-AAACCTTGTA-ATTTCATCTTTGGCAGAGGTGTTAGTG-AGCA--GAG-GACAGAG-AATTGAA--------G---GGGGGGGGAC-AAAATACGACA-------------------GGCTA-CTTAA-CATTCAGTAGG-AAGTGTGTAA-----GATCTCG-TCTATTTTGTATT-GGAGTGCT-GTTAACAACC-AGTTTCT-GTTATTTAAAA-AATAATTA-AT-CGAA-CA-CAAGA-TGTTTAC-TTACTGACTTGAATGAGATCA--CG-AATTT----A------TCGTT--A--CATTT-----------ACAT-GCC------------ACA--TTT--CTG-CATGACTGTA--T-TACTG-AGATGC-AC-GCCATTTA-TTGCTATT-ATGA-ATTA----AAT---A-G-TT-TG-GTT---G-TA-----C-AAT--GTTC---CG-----------TTTCT-------CT----TT-G----CTTC-GGT----A------------TAA-G---GT-TT-CGTTT-C-----G-TT---------------TT----GA----T----TT---CGTTTCGCACTTaat
gi|20 : -----------TTTCG-------TT----TC-A----TTTC-GG------------------T-A-G---AT-TG-CGTTT-C-----G-TT---------------TT----G
gi|21 : gtaaa---GT-TT-CGTTT-C-----G-TT---------------TC----GA----T----TT---AGTTTTGCACTTcattttacaggtac
gi|22 : --T-TACTG-AGTTGC-TC-GCCATTTA-TTGCTATT-ACAA-ATTA----AAtacaggta
gi|3 : GTGTATATTGT-TTG--TTT-AA-----TAAGATACACTAAT--GCA-TTGGCGCAAAAGTTTATAGATA------TATTAGTTTTGCTAAAACGTGGAAAAGAAAA-CGGACGGGAAATTTAAGAAT-TACATGT---ATTATA-A-TCAT--------------T--AATTG---GG--TCATAT-TCAAAA-TTGTAGGAATTTGTTCAC-AGCGGTAAAACAATTT-TACCTT---AAATTCT--ACAGCAT-AAATTGATTAAGCTAAGTTGA--------ATGTTGGT-AAAACATTTCTC------------------ACAACAAAC-TTGCA-ATTTCACCATTGACAGAGATGTTAGCG-ATCA--GA----CAGAGTTATTGAA--------G---GGGGG-------AAAT-CGACACA-GA--CCCTTTTCTCGTGGCTATTTTAA-CATTCAGTACG-AAGTGTGTAA-----GATCTCG-TTGATTTTGTATT-GGAGTGCT-GTTAACAATC-AG-----------TTAAAA-AATTATCA-AT-CAAA-CA-CAAGATTTTTTAC-TTATTGACTTGAATAAGATAA--TG-AA-TA----A------TCGTA--A--CATTT-----------ACA----------------------------TG-TATGACCGTT--T-TACTG-AGATGC-TC-G-CATTTA-TTGCTATT-ATGA-ATTA----AAT---A-A-TT-TG-GTT---G-TA-----C-AAT--GTCC---AG-----------ATTCT-------TT----AT-G----TTTC-TGC----A------------TCA-G---GT-TT-GGTTT-C-----G-GC---------------T-----GG----T----TT---CGTTTCG
gi|3 : T--GTTT---CA-----------TTTCG-------TT----TC-G----TTTC-AG------------------T-A-G---AT-TT-CGTTT-C-----G-AT---------------------------T----TT---GGTTTCGCACTTtttaagtggatttcgtttcgtttttggtgtgtttcatttcgtttcgtttcagtagatttcgtttcgattttggtttcgcactttactgg
gi|4 : gtgtatattgtttgtttaataagatacactaatgcattggcgcaaaagtttatagatatattagttttgctaaaacgtggaaaagaaaacggacgggaaatttaagaattacatgtattataatcattaattgggtcatattcaaaattgtaggaatttgttcacagcggtaaaacaattttaccttaaattctacagcataaattgattaagctaagttgaatgttggtaaaacatttctcacaacaaacttgcaatttcaccattgacagagatgttagcgatcagacagagttattgaaggggggaaatcgacacagacccttttctcgtggctattttaacattcagtacgaagtgtgtaagatctcgttgattttgtattggagtgctgttaacaatcagttaaaaaattatcaatcaaacacaagattttttacttattgacttgaataagataatgaataatcgtaacatttacatgtatgaccgttttactgagatgctcgcatttattgctattatgaattaaataatttggttgtacaatgtccagattctttatgtttctgcatcaggtttggtttcggctggtttcgtttcgtttaagtggatttcgtttcgtttttggtgAATTTT--ACAACAT-AAATTGATTAAGCTAAGCTGG--------ATGTTGGT-ATGAAATCTCTTTG---TACTA-GTGTTTTACAA-AAA--------------TCTTTGACAGAGGTGTTAGCT-AGCA--GAGTG-CAGAC-AATTGAAATGGGGGGG---AGGGGGAGACTAAAATATGACACAAGC--CCCTTCTCTCGGGGCTA-TTTAA-CATTCGGTAGG-AAATGTGTAA-----GATCTAG-TCTATTTTGTATT-GGAGTGCT-GTTAACATTC-AGTCCCT-GTTATTCAAAA-AATAATTA-AT-CAAA-CG-CAAGA-TGTTTAC-TTATTGACTTAAATAAGATCA--CG-AA-TG----G------TCGTT--A--TA-TT-----------ACATCGCC------------ACAACTTC--CTG-TATGAACGTA--T-AACTG-AG-TGCTTC-GCCA-TTA-TTG-TATT-ATAA---TA----AAT---A-G-TT----GTT---GCCA-----C-AAT--GTTCGTTCT-----------CTTTGT------TT----TC-GTCTATTTT-TAT----A------------A-A-G---GT-TC-CGTTTAC-----G-GT---------------TA----GG----T----TT---CGTTTtactgg
gi|5 : A-AATAATTATATGCAAATCA-CAAGA-TGTTTAC-GTAGTGACTT-AATAAGATGAACCGTAATTACTGAG------TTGTT--CGCCATTT-----------AATT-GCTTGATAACATTAAATA--TTT--CTG-CTTG--------T-TAT----AATGT-TC--CCGTTC--TTACTATT-TT----TTTCGGTAAT---A-GGTT-TGCGTTTCGA-TAGGTTTC-ATTTCGTTT---CGGTATAGG----CTTCG-------TT----TC-A----TTTCTGG------------------T-G-G---GT-TTCCGTTT-C-----G-CT---------------TC----GG----TGGGATT---CGTTTCGgtttcgtgtggggttcgtttcgtattggtgggtgttgttatcgatttcggtagaatttcgttcgttcagtttttcgattgtcgcgcacattttacag
gi|5 : -----------TTCCG-------TT----TC-G----CTTC-GGT----G----------------G---GA-TT-CGTTT-C-----G-GG---------------TA----GA----T----TT---CGTTTCGggtagatttcgtttcggttttctatttcgtatgcaaactcttacaagt
gi|6 : aaataattatatgcaaatcacaagatgtttacgtagtgacttaataagatgaaccgtaattactgagttgttcgccatttaattgcttgataacattaaatatttctgcttgttataatgttcccgttcttactatttttttcggtaataggtttgcgtttcgataggtttcatttcgtttcggtataggcttcgtttcatttctggtgggtAA-AATAATTA-TT-CAAA-CATCCAGA-TGTTTAC-GTAGTGACTT-AATAAGATGAC-CGTAATTC----ACTGCAGTTGTTCGC--CATTTAATTGGCTATAACAT-TAA------------ATA--TTT--CTG-CTT----GTA--T--------AATGT-T---CCGTTTT-TCTATATT-GT----TTCGGT-AAT---AGG-TT-TGCGTT-----T------C-GATAGGTTT---CA-----------TTTCG-------TT----TC-G---------GGT----A------------T-A-G---GC-TT-CGTTT-CA----A-TT---------------TC----GG----TGGG-TTTCCCGTTTCGCgttttctatttcgtatgcaaactcttacaagt
gi|6 : ATGACCGTAATT-CACTGCAGTTGT-TC-GCCATTTAATTG--GCT-ATAACATTA----AAT---A-T-TTCTG-CTT---G-TA-----T-AAT--GTTC---CG-----------TTTTT-------CTATA-TT-G----TTTC-GGTA---A------------T-A-G---GT-TTGCGTTT-CGATAGG-TT---------------TC-----A----T----TT---CGTTTCGttcggctgggatttcgtttcggggtagatttcgtttcgtttctatttcgttgcacactttacaag
gi|6 : aaaataattattcaaacatccagatgtttacgtagtgacttaataag--GTTT---CG-----------CTTCGGCTGGGATT----TC-G----TTTC-GGG----G------------T-A-G---AT-TT-CGTTT-C-----G-TT---------------TC----TA----T----TT---CGTTGCACACTTggtataggcttcgtttcaatttcggtgggtttcccgtttcgcttcggctgggatttcgtttcggggtagatttcgtttcgtttctatttcgttgcacactttacaag
gi|7 : aaaataattattcaaacatccagatgtttacgtagtgacttaataagatgaccgtaattcactgcagttgttcgccatttaattggctataacattaaatatttctgcttgtataatgttccgtttttctatattgtttcggtaataggtttgcgtttcgataggtttcatttcgtttcgggtataggcttcgtttcaatttcggtgggtttcccTGTTGCTAAAACGCAGAGCGGAAAA-CGGAATGGAAA-TTAAGG---TAAATGTATAGTTAAATA-CCA--AAAACCGT-GAAAA--AAGTGTTTTA--TTTTAA-TCAAAA-TCCT---AATTACTTTACAAGCGGTGAAACAATTG-TGTCT------GTTC---------T-AGGTTGATTAATCC---TCG----------TGTCAGTCATGTGA--TGTC-A---TA----GCATTTTAAAA-AAACTTTGCGCATTTTATtacaag
gi|8 : -AAAATACGACAC--GGGTCCTTTCTCTCGGGGCTA-TTTAA-CATTCAGTAGG-AAATGTGTAA-----GATCCCG-TCTATTTTGTATT-GGAGTGCT-GTTAACATTC-ATTCTCT-GTTAGTTAAAA-AATAATTA-AT-CAAA-CG-CAAGA-TGTTTACATTAATGAC-TGAATA--ATCA--CG-AATTA----A------TCGTT--A--CATTT-----------ACAT-GCC------------ACA--
gi|9 : aca-----------TTTCG-------TT----TC-G----TTTT-GGT----A----------------G---AT-TT-CGCTT-C-----G-TT---------------TC----TA----T----TT---CGTTTCGCACTTc
gi|9 : cctgtaG-----------TTTCG-------TT----TC-A----TTTC-GGT----A----------------G---AT-TT-CGTTT-C-----G-TT---------------TT----GGTAGAT----TT---CGCTTCGtctaccgaaatgaaacgaaacccaccgaaacgaaacgaaacctaaaagcacaaggtaaaaatcttaagttaacttagatcataatgggacaggggcaattgagtttcagaaatttcagatgggagggtgt
gi|9 : cctgtaaagtgcgaaacgaaatagaaaG-----------TTTCG-------TT----TC-G----TTTC-GG------------------T-G-G---GT-TT-CGTTT-C-----A-TT---------------TC----GGTAGAT----TT---CGTTTCGccaccgaaacgaaacgaaacctaaaagcacaaggtaaaaatcttaagttaacttagatcataatgggacaggggcaattgagtttcagaaatttcagatgggagggtgt
gi|9 : cctgtaaagtgcgaaacgaaatagaaacgaagcgaaatctaccaaaaAAG-TTAACTTAG-ATCAT-A---ATGGGACAGGGGCAATTGAGTTTCAGAAATTTCAGATGGG-AGGGTG--ctaaaagcacaaggtaaaaatcttaagttaacttagatcataatgggacaggggcaattgagtttcagaaatttcagatgggagggtgt
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|17 ): GTGGGTTTCGGGATTTCGGTTAGATTTCGGTTGTTTCGTTTCGTGTTTCGTTTCGATTTTCGATTCTTTCGCACTTACA