lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 1111 11111111 11111111111 1111 111 111111 1 22222 1 11 88888888888888 555555555 1111 1 6666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 2222222 88888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 1 1111 9999999999999999999999 2222 222 1 1 22 3333 22 11 5555 4 2222 1 77777 222 444444444444444444444444 111 33333333333333 333 33333 111 333333 333333 33333 33 55555555555555555555555555555555 44444 33333 22222 11 44444444444444 1 1 1
lowQualScore : 3 2 2 2 33 4 2 2 2 4444 2 1111 2 2 2 444 2 2 33 777 2 2 8888 888 22222222 3 3 6 44 55555555555 33 6 3 3 44 55 4 4 4 4 4 4 5 66 0000 5 5 5 5 5 66 5 66 888 5 333 5 5 66 555555 5 999999 00000 0 6 11 88888888888888 99 3 555555555 0 7777 8 6 1 1 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 4444444 99 6 88888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 5 5 77 77 2222 5 2 55 4 1 4 0000000000000000000000 2222 4 777 4 3 66 4 2 7 8 99 4 9 4 5 5555 5 777 5 66 5 44 6 2 9999 5 5 0 5555 5 5 1 6 3 5 11111 5 77 0 77 5 5 333 1 999999999999999999999999 4 99 222 11111111111111 777 444 1 88888 5 5 33333 777 111111 111111 5 6 5 5 5555 77 77 77 44444 5 88 77 1 9 33333333333333333333333333333333 77 3 4 3 44444 333 77777 66666 6 6 3 6 00 33333333333333 0 8 8 0 3
lowQualScore : . . . . .. . . . . .... . .... . . . ... . . .. ... . . .... ... ........ . . . .. ........... .. . . . .. .. . . . . . . . .. .... . . . . . .. . .. ... . ... . . .. ...... . ...... ..... . . .. .............. .. . ......... . .... . . . . .................................................................................................... ....... .. . .............................................................................................................. . . .. .. .... . . .. . . . ...................... .... . ... . . .. . . . . .. . . . . .... . ... . .. . .. . . .... . . . .... . . . . . . ..... . .. . .. . . ... . ........................ . .. ... .............. ... ... . ..... . . ..... ... ...... ...... . . . . .... .. .. .. ..... . .. .. . . ................................ .. . . . ..... ... ..... ..... . . . . .. .............. . . . . .
lowQualScore : 1 7 5 4 22 7 4 2 2 7777 2 7777 7 7 7 777 7 7 99 333 9 9 1111 222 88888888 1 1 2 22 77777777777 99 2 1 1 22 00 0 0 0 4 4 4 0 99 6666 0 0 0 0 0 99 0 99 888 0 888 0 0 99 999999 0 999999 00000 8 7 00 00000000000000 22 5 666666666 8 0000 0 7 4 4 4444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 0000000 22 7 22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 0 7 99 99 1111 0 2 55 4 1 4 2222222222222222222222 2222 4 666 4 3 11 4 8 3 9 77 4 4 4 0 4444 0 111 0 99 7 77 7 2 2222 0 0 0 6666 0 0 7 7 9 7 88888 7 99 7 44 7 7 111 7 333333333333333333333333 4 11 222 44444444444444 888 111 4 00000 7 7 33333 666 000000 111111 7 0 7 7 7777 99 99 99 77777 7 66 99 7 1 11111111111111111111111111111111 99 0 2 2 88888 666 00000 00000 0 0 2 4 88 00000000000000 0 0 0 6 3
consensus : TCTA-AACACTTTC-TT-GAA-ATATT--TCGA-C-CGCGT-TAC-CG----G-TCTT----CATCAGT-C-G-T---GTTT-A-TT--T---TCCG-TAGC-AA--C-ACAAC--GCACG-A--CTA-CACA-CA-T-TAG--AGTA--------C--TG--TG-A-CG-TCAC--AG--T-GGA-TA-TTA-AG-TT-GAAC-AA--TAA----CG-TCA-CAG-TTGAAA-TT-ACGCG--CAAAA-CA--TTT---G-AAAA---TAG-T-AAG--AGTC-T----ATGAAATTAACAA---T--AGC-----TAAGTTAGCCGC-GTCGGC--AT--C----A-G----ATAAGCG--TAGAATGAAATA-ATA--T-GTAAGTAAT----GGTA-CAAAATA-TAGGGAAATT-ACGAACAC----------AT-----T-G-CGACTACT-GACC--T--G-CC-T----------CA-AAAA-TGCTTTCC--AAA--------ATA--TG-C-C--AT-TAGTAATT---AAA-TTA--TACA-TGTA----------CATAC-AT-AATTATACAA-T-ACAATAT---AAGA---GTTA--T-------A----C-AACAAT--T---TT------TC--TATATAC-T-CTG--TTTACA-TGTT--AAGA--CG----CA-TTTTTAAAG--ACAGAAATGTT-CCCGTTTG-TTTATTCC--GA-AT----TGTNNCGTAAGTG--TTCA-ATTTTTTCC-TTC-CATAGG-T--TT-CTCTAAAATCGACGATAAATG-TC-ATCTTTG-TAAAGC-TTTT-CCA-T-CC-T-A-TTATAG-AAT-AA-TCACTTATAATT-GTGAGAGTCCGTGCAAA--A-ATGAA-TAG-CTA-CCGGGTCGTCA--AGTC-TTCCTTCTAATAAGTGACAAAATT-TAACACATGCCTCTG-ATA---AT-A--AAGTAGCACCAG-TTTCTC-CCACA-T-AATACGA-----ATT-T--TTATTTTGCA--TTTTTTTGC-AG-AACA---CTC-CCA-T-AA--C-TACA--TTACTG-GATTTACA-A-TT-AA-TGT--A--TTTTTA-ATATGAT-AT-T-TGTTGCC--GTT-ACA-ATC-CT-CG-AAT--TGG--TTAG--T-TTT-TATGAC-ATAT-T--GACATAANATGCCAAC--TTTTTA-GC----AC---CACAT--GGC--TCGCNCAAGTTTTT--CT-TTTCTTTAAAAAAAAAC-TAGATTA-TTATGTTTCTTATGTACNAAGATGTTT-TTTAAA---TTTGT-NTGATTCT-T-CTGAAAAGCTACT-ATGGGCA
Reference ( gi|2 ) : TCTA-AACACTTTC-TT-GAA-ATATT--TCGA-C-CGCGT-TAC-CG----G-TCTT----CATCAGT-C-G-T---GTTT-A-TT--T---TCCG-TAGC-AA--C-ACAAC--GCACA-A--CTA-CACA-CA-T-TAG--AGTA--------C--TA--TG-A-CG-TCAC--AG--T-GGA-TA-TTA-AG-TT-GAAC-AA--TAA----CG-TCA-CAG-TTGAAA-TT-ACGCG--CAAAA-CA--TTT---G-AAAA---TAG-T-AAG--AGTC-T----ATG-AATTAACAA---T--AGC-----TATGTTAGCCGC-GTCGGC--AT--------------ATAAGCG--TAGAATGAAATACATACGT-GTAAGTAAT----GGTA-CAAAATA-TAGGGAAATT-ACGAACAC--------TGAT-----TCG-TAAC-ACT-GACC-----G-CC-T----------CA-AAAA-TGCTTTCC--AAA--------ATA--T--C-C--ATCTAGTAATT---AAA-TTA--TACA-TGTAT---------CATAC-AT-A-TTAT-----T-ACAG-AT---AAGA---GTTA--T-------A----C-AACAAT--T---TT------TC--TAGATAT-T-CTA--ATTAAA-TGTT--AAGA--CG----CA-TTTTTAAAG--ACAGAAATGTT-CCCGTTTG-TTTTATGT--GA-AT----TATTCCGTAAGTG--T-CA-ATTTTTTTCTTTC-CATAGG-T--TT-CTCTAAAATCGACGATAAATG-TCGATCTTTG-TACAGC-TTTT-CC--T-CC-T-A-TTATAG-AA--AA-TCACTTATAATT-GTGAGAGTCCGTGCAAAC-ACATGAA-TAG-CTATCCGGGTCGTCA--AGTC-TTCCTTCTAATAAGTGACAAAATT-TAACACATGCTTCTG-ATGAGGGT-A--AAGTAGCACCAG-TTTCTC-CCACA-T-AATACGA-----ATT-T--TTATTTTGCAATTTTTTTTGC-AG-AACA---CT--C-A-T-AA--C-TACA--TTACTGCAATTTACA-A-TT-AA-TGT--A--TTTTAA-ATATGATTAT-TGTGTT-TC--GTT-ATA-ATC-CT-CG-AAT--TGG--TTAG--TATTTGTATGAC-ATA--T--GACATAATATGTCGAC--TATTTA-GC----AC---CAC----GGC--TCGCACAAGTTTTT--CTGTTTCTTTAAAAAA-----TAGATTC-TTGTGTTCCTTATGTGCCAAGATGTTC-TTTAAA---T---T-GTACTTCT-T-CTGAAAAGCTACT-ATGGGCA
gi|1 : TCTATAACACTTTC-TT-GAAGATATT--TCGA-CACGCGT-TACTCT----G-TCTT----CATCAGT-C-G-T---GTTTTA-TT--T---TCCG--AGC-AA--CCACAAC--GCACA-AAACTA-CACA-AT-T-TAG--AGTA--------C--TA--TGGA-CGGTCAC--AG--T-GGAGTA-T-A-AG-TT-GAAC-AA--TAA----CG-TAAACAG-TTGAAA-T--ACGCG--CAAAAACA--TGT---G-AAAAA--TAG-T-AAG--AGTC-T----ATG-AATTAACTA---A--AGC-----TATGTTAGCCGCCGTCGGG--AT--------------A-AAGCGCTTAGAATGAAATACATACGTAGTAAGTAATTTGTAGCA-AAAAATA-TAGGGAAATTTACGAACAC----------AT-----CAG-CAGT---T-GACTACTA-G-CC-TA---------TG-ATAA-TA-TTTAC--AAACATGAACAGTA--TA-C-C--AT-TAGTAATT---AA--TTA--TACA-AGTA----------CATAC-AT-AATTATACAATT-ATAA-A----AAGA---GTTA--CTGGCAAAA----C-AATAATAAT---ATAACACATA--TA-ATATAT-ATA--TTTACA-TGTT--AAGA--CG----CA-TGTT-AAAG--ACAGAAATGTT-CC-GTT-G-TTT-ATCC--GA-ATG---TGGTGCGTAAGTGATT-CA-ATTTTTTC--TTC-CATAG--T--TT-CTCTAAA-TCGACGATAAATG-TCA--CTGT--TA-AGC-TTTT-CCATC-CC-T-AATTATAG-AAT-AA-TCACTTATA-TT-GTGAGAGTCCGTGCCTATGAAATGAAATAGACTA-CCGGGTCGTCA---GTCATTCCTTCTAATA-GTGACAAA-TT-AAACACATGCCTCTG-ATA----T-A--AAGTAGCAC-AG-TTTCTC-CCACA-T-ATTACGA-------T-T--TTATT--GC---TTTTTTTGC-AG-GACA---CT--CCA-T-AAAAC-TACA--TTACTG-GATTAACA-AGTTGAA-TATTAA--TTTTTA-ATATGAT-ATCTTTGTTGCC--GTTTACA-ATC-CTGCGGAAT--TGGAGTTAGATTGTTTTTATGACCATAGTT--GACATA-TATGC--AC--TTTTTA-GCCCAAAC---CACAT--GGC--TCGCACAAGTTTTC-----TTTTTTTAAAAAA-----TAGATTA-TTATGTTTCTTATGTACAAGAATGTCT-TTTAAA---T---T-CTTATTCTCT-CTG-AAAGCTACTGATGG
gi|5 : aaagtctctttcatcggagtaaaatttgaaacccacaaacTCTA-AACACTTTC-TT-GAA-ATATT--TCGA-C-CGCGT--AC-CG----G-TCTT----CATAAGT-C-G-T---GTTT-A-TT--T---TCCG-TAGC-AAAAC-ACAACACGCACATA--CTA-CACAACACT-TAG--AGTAA-------C--TAAGTG-AACG-TCAC--AG--T-GGA-TT-TTA-AG-TTTGAACCAA--TAA----CG-TCA-CAA-TTGAAA-TT-ACGCG--CAAAA-CA--TTT---G-AAAA---TAG-T-AAG--AGTC-A----TTG-AATTAACAA---T---GC-----TAAGTTAGCCGC-GTCGGC--AT--------------AT-AGCG--T-GAATGAAATA------T-ATAAGTAAT----GGTACCAAAATA-TAGGGAAATT-ACGAACAC----------ATAGCAGTTG--AACTACT-GA-------GACC-TATGTGAATTACA-AACA-TG--------AAA--------ATA--T--A-CAAAT-TAGTAATT---AAAGTTA--TACA-TGTA----------CATATAAC-A-TAAT-----TAACAATATAAAAAGA---GTTA--T--------------AACAAT--TCTATT------TC--TAGCTATGT-------TTACA-TGTT--AAGA--CG----CATTTTTTAAAG--ACAGAAATGTT-CCCGGTTG-TTTAATTTCCGACAT----GGTGGCGTAAGTGT-T-CA-A-TTTTTTCTTTC-CATA-G-T--TT-CTCT-AAATCGACGATAAAAGATCCATCTTTG-TACAGC-TTTT-CA--TCCC-T-A-TTATAGTAAATAA-TCACTcatatgtttggaaagcatttttgaggcggtcagagtttctcaagaattttttgtcgatttttaaaattttatgaatattggaagtcctttagaatagtttacgtacaagggaccgatt
gi|7 : aaagtctctttatcggagtaaaattaaaaaaaaaacTCTA-AACACTTTC-TT-GAA-ATATT--TCGA-C-CGCGT-TAC-CG----G-TCTT----CATCAGT-C-G-T---GTTT-ATTT--T---TCCG-TAGC-AA--C-ACAAC---TACA---------ACA-CA-T-TAG--AGTA--------C--TA--TG-A-CG-TCAC--AG--TGGGA-TA-TTA-AGTTT-GAAC-AA--TAA----CG-TCA-CAGTTTGAAATTT-ATGCG--CCAAA-CATGTTT---GAAAAA---TAG-TAAAG--AGTCTT----ATGAAATTAACAA---T--AGC-----TAAGTTAGCCGC-GTCGGC--AT--------------ATAAG-G--TAGAATGAAATA------T-ATAAGT-AT----GGTA-CAAAATATTAGGGAAA-T-ACGAACAC--------ATAG-----CAGTTGACTACT-GACCTATGTG-AA-T----------TACAACA-TG---------AA--------ATA--TA-C-C--AT-TAGTAATT----AA-TTA--TACA-TGTA----------CATAC-ATAA-TTATACAA-T-ATAA-A----AAGA---GTTA--T-------A----CAAACAA---T---TT------TC--T--ACAT-T-CTATGTTTACATTGTT--AAGA--CG----CA-TTTTTAAAG--ACAGAAATGaag
gi|13 : ataatacaaaagtctctcatcggagtaaaatttaaaaaaaaaaaaaacaaacTCTA-AACACTTTC-TTTGAA-ATATT--TCGACC-CGCG--TAC-CG----G-TCTT----CATCAGT-C-GTT---GTTT-A-TT--TTTATCCG-TAGCAAA--C-AC-AC--CCACA-A--CT--CACA-CA-T-TAGTAAGTA--------CTTTA--TG-A-CG-TCACAAAG--T-GGA-TATTTA-AG--T-GAAC-AAATTAATTACCGTTCA-CAG-TTGAAA-TTAACGCGGACAAAA-CA--TTTAGGA-AAAA---TAG-T-AAAGTAGTC-G----ATG-AATTAACAAAGCT--AGCCTAATTAAGTTAGCCGC-GGCG
gi|31 : taaaattttttaaaaaaaaaaaaataaaaaaaaccgtctaccacTCTA-AACACTCTC-TT-GAA-ATATT--TCGA-C-CGTAT-TAC-CA----G-TTTT----CCTCAGT-C-G-T---GTTT-A-TT--T---TC
gi|40 : cagtcttttttatcggagtaaaatttaaaaaaaacaacTCTA-AACACTTTC-TT-GAA-ATATT--TCGA-C-TGCGT-TAC-CG----G-TCTT----
gi|39 : acTCTA-AACACTTTC-TT-GAA--TATT--TCGA-C-CGCGT-TAC-CG----G-TCCT----
gi|38 : cccCCA-AACACTTTC-TT-GAA-CTATG--TTGA-C-CGCAT-TTC-CG----G-TGTT----
gi|18 : aacgTA-AACACTTTCCTT-GAA-A-ATT--TCGAAC-CGCGT-TAC-CG----GGTCTT----CATCAGT-C-G-T---GTTT---TT--T---TCCGCTAGC-AAA-C-ACAAC--GCACA----CTA-CACA-CA-T-TAG--AGTA-----------TA--TGCA-CG-TCAC--AGGGT-GGA-TA-TTA-AG-TT-GAAC-AA--TAA----CG-TCA-CTG-TTG-AA-TT-ACGTG---GAAA-CA--TTT---G-AAAA---TAG-T-A----------------G-AATCGACAA---T--AG
gi|14 : actctTA-GACACTTTC-TT-GAA-GTATT--TTGA-C-TTTGG-TAT-CG----T-TCTT----CCTCAGT-C-A-T---GTTT-A-TT--T---T-----------------AAA--GCAAG-A--CTA-CATA-CA-T-AAG--ATTACTGACTAGC--TG--TG-A-CA-TCAC--AA--T-GGG-TA-TTACAT-TT-GATC-AG--TAA----CA-TCA-CAG-TTGAAA-TT-ACATG--CAAAA-CA--ATT---G-AAAAAGGTAATT-AAG--AGTC-TCATAATGAAATTAACAA---T--GGC-----Tt
gi|25 : gacaaattctttaatttgaaatatatgtatttacaaatgtacatataTA-AACACTTTC-TT-AAA-ATATT--TCAA-C-CG--------------G-TCTT----CATCAGT-T-G-T---GTTT-A-TT--T---TCCG-TAGC-AA--A-ACAAC--GCACG-G--TTA-CATA-CA-T-AAG--AGTA--------C--TG--TG-A-CA-TCAC--AA--T-GGA-AA-GTA-AG-TT-
gi|24 : taaaaactgggaacctgTA-AACACT--------GA-ATATT--TTGA-C-CACAT-TAC-CA----G-CCCTA---CCTTAGTCC-G-T---GTTT-A-TT--TA--TAC--TAGC-Aatgca
gi|23 : atattataatttatgaaaaagtctcttatatccaagaaaaatgtaaaaagctctaaagctaA-AACACTTTT-CT-GAA-ATATTTCTCGA-C-C-CGTATAC-CGGGTCG-TTGT----CATCAGT-CAG-TTTGATTT-A-TTAAT---CCCG-TAGC-GA----ACAA-----ACAGA--CGG-AACA-AA-T-TAT--A-TA--------C--TA--tatcataaatgcaat
gi|30 : aaactcTTC-TC-TAA-ATATT--TCAC-C-CATGT-TAC-CA----A-CCTTCCTGCATCAG----------GTTC-A--T--T---GCTA-TAGC-AA--C-AAACC--ACATG-A--CCAGCATA-CA-TCTTG--AA-A--------T--CG--TG-A-CA-TCAC--Aaacacatcaattatgtagttttgactatgaaacgtca
gi|29 : TTC-TC-TAA-ATATT--TCAC-C-CATGT-TAC-CA----A-CCTTCCTGCATCAG----------GTTC-A--T--T---GCTA-TAGC-AA--C-AAACC--ACATG-A--CCAGCATA-CA-TCTTG--AA-A--------T--CG--TG-A-CA-TCAC--A
gi|9 : -GAA-ATATT--TCGA-C-CGCGT-TAC-CG----G-TCTT----CATCAGT-C-G-T---GTTT-A-TT--T---TCCG-TAGC-AA--C-ACAAC--GTACA-A--CTA-CACA-CA-T-TAG--AGTA--------C--TA--TG-A-CG-TCAC--AG--T-GGA-TA-TTA-AG-TT-GAAC-AA--TAA----CG-TCA-CAC-TTGAAA-TT-ACGCG--CAAAA-CA--TTT---G-AAAA---TAG-T-AAG--AGTC-T----ATA-AATTAACAA---T--AGC-----TAAGTTAGCCGT-GTCCGC--GTATCTTCAAGGATGAATAAGCG--TAGACTGAAATA------T-GTAAGTAAT----GGTA-CAAAATA-TAGGGAAATT-ACGAACACATAGCAGTTGAT-----T--------ACT-GACC-----
gi|32 : ggcattaacgctttaatagatgtaactgaggtacttcctgtttatatgtatgtacatgcAA-ATATT--T--A-C-CGCAT-TAC-CA----G-TTTT----CCTCAAT-C-G-T---GTTT-A-Ttatgtgaattacaaacatgaaa
gi|6 : aaaaaaccaaaacctctagattagactaaaatactgaCGC-TAC-CG----G-TCTT----CATCAGT-C-G-T---GTTT-A-TT--T---TTCT-TAGC-AA--C-AGA--------------------A-CA-T-TAG--AGTA--------C--TA--TG-A-CG-TCAC--AG--T-GGA-TA-
gi|37 : tcttgagtatgtccggcgtacatcgtt---TCTG-TAGC-AA--C-ACGAC--TCACG-A--CCA-CATA-C--C-TAG--AGTA--------T--TG--TG-A-CG-TCAC--AG--nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncatataccaatattaactaattgtacatgtacatacataattatacaatataaaaagagttatacaacaattttctatattctctgtttacatgttaagacgcatttttaaagacagaaatgttcccgtttgtttattccgaatggtgcgtaagtgttcatttttttttcttcataggttttctctaaatcgatgataaacgtcttctttgtaaaact
gi|22 : --TG--TG-A-TG-TCAC--AA--T-GAA-TA-TTA-AC-TT-TATC-AG--TAA----CA-CCA-TAG-TTGAAA-TT-ACGTG--CAAGG-CA--TTT---G-TAAA---AAG-T-AAG--AATC-T----ATGAAATTAACAA---TACAGCT----TAC-CTACCCCC-CTCGACAAATCCCCAAGAAGGA--ATAAGCG--TAGAATAAAATATATAAGT-gg
gi|28 : TACGCG--TTGAATCAAA---ATA-----TAAGTAAT----CTTA-CAAGATA-GAGGAAAAGT-ATGAACAC--------aa
gi|3 : tttttggataattattctttggtttaacgatATA-TAGGGAAATT-ACGAACACATAG----CAAT-----T----GACTACT-GACCTATGTG-AT-TTA--------CA-AACA-TG---------AA--------ATA--T--TAC--AT-TAGTAATTTTAAAA-TTG--TACA-TGTACAATGCAGTACATAC-AT-AATTAT-------ACAATAT---AAAAATAGTTAAAT-------A----C-AACAAT--T---TT-------C--TATATTC-T-CTG--TTTACA-TGGT--AAGA--TG----CA-TTTTTAAGG--ACAAAAATGTT-CCCGTTTG-TTTATTCC--GA-ATCGGGTGT---GTAAGTG--TTCA-ATTTTTTC--TTC-CATAGG-T--TTTCTCTAAA-TTGACGATAAATG-TCT-TCTTTG-TAAAGC-TTTT-CCA-T-CC-TTA-TTATAT-AAT-AA-TCACTTA-AATT-GTGAGAGTCCGTGCAAA--A-ATGAA-TAG-CTA-CCGGGTCGTCA---GTC-TTCCTTCTAATAAGTGACAAA-TT-TAACACATGCCTCTG-ATA----T-A--AAGTAGCACCAG-TTTCTC-CCACA-T-A-TACAA-------T-T--TTATT--GCA---TTTTTTGC-AG-AACA---CT--CCA-T-AAA-C-TACA--TTACTG-GATTTGCA-A-TT-AA-TGT--TGTTTTTAATATATGAT-AT-T-TGTTGCC--GTT-ACA-ATC-CT-CG-AAT--TGG--TTAG--T-TTT-TATGAC-ATA--TTTGACATAATATGC--AT--T-TTTA-GC----AC---CACAT--GGC--TCGCACAAGTTTTC------TTTTTTAAAAAA-----TAGATTA-TTATGTTTCTTATGTACCAAGATGCTT-TTAAAA---T---TCTTATCTCT-T-CTG-AAAGCTACT-ATGGGCAacagcagttgactttgaacca
gi|4 : AAATCGACAAATAA--------AAAT-----TCT-TGAA-ACTCGACC-----G-CTGT----------CA-AAAAATGCTTTCC---AA--------ATAAGC--C-C--A--TAGTAtattttttggaaagcatttttgaggcggtcagagttctcaagaattttttgtcgattttttaaaaattttatgaattttggaaagtcctttagaatagttt
gi|1 : tcaattttttcttccataggtttctctaaatcgacgataaatgtcatctttgtacagcatgttacctcccttatagaataatacttataatttgtgagagtccgtgcaaaaatgaatagctaccgggtcgtcagtcttccttctaataagtgacaaattttaacacatgcctctatattaaagtacaccagttctctccacatatacgattttatttgctttttttgcagaaaactccattaacttacactttactggatttacaattaattgtaatttttaattgataatttgttgccgttacaatcctcaatggtggttagttttataacatatttgacttaattagcatttttttagcaccacatttggctttcgcacaagttttttcttttttctttaaaaatagatttattgtgtttcttatgtaccaagatgttcttttaaaattttctatctcttgctgataagcAAC-TCT-GACC-----G-CC-T----------CA-AAAA-TGCTTTCC--AAAC-------ATA--TG-C-C--ATC-AGTAtgttaaaattttcattgaatattgggaaagtcctttagaatagtttactacaaggggaacacgattattttaccgctttctctttttctgtagtta
gi|3 : aaagtctctttcatcggagtaaaatttgaaacccacaaactctataacactttcttgaagatatttcgacacgcgttactctgtcttcatcagtcgtgttttattttccgagcaaccacaacgcacaaaactacacaatttagagtactatggacggtcacagtggagtataagttgaacaataacgtaaacagttgaaatacgcgcaaaaacatgtgaaaaatagtaagagtctatgaattaactaaagctatgttagccgccgtcgggataaagcgcttagaatgaaatacatacgtagtaagtaatttgtagcaaaaaatatagggaaatttacgaacacatcagcagttgactactagcctatgataatatttacaaacatgaacagtataccattagtaattaattatacaagtacatacataattatacaattataaaaagagttactggcaaaacaataataatataacacatataatatatatatttacatgttaagacgcatgttaaagacagaaatgttccgttgtttatccgaatgtggtgcgtaagtgattcaattttttcttccatagtttctctaaatcgacgataaatgtcactgttaagcttttccatccctaattatagaataatcacttatattgtgagagtccgtgcctatgaaatgaaatagactaccgggtcgtcagtcattccttctaatagtgacaaattaaacacatgcctctgatataaagtagcacagtttctcccacatattacgattttattgctttttttgcaggacactccataaaactacattactggattaacaagttgaatattaatttttaatatgatatctttgttgccgtttacaatcctgcggaattggagttagattgtttttatgaccatagttgacatatatgcactttttagcccaaaccacatggctcgcacaagttttctttttttaaaaaatagattattatgtttcttatgtacaagaatgtcttttaaattcttattctctctgaaagcAAC-TCT-GACC-----G-CC-T----------CA-AAAA-TGCTTTCCAAAAA--------ATA--TGCC-C--A--TAGTAtctcaagaattttttgtcgatttttaaaattttatgaatattggaagtcctttagaatagtttacgtacaagggaccgatt
gi|6 : atatagggaaattacgaacacatagcaattgactactgacctatgtgatttacaaacatgaaatattacattagtaattttaaaattgtacatgtacaatgcagtacatacataattatacaatataaaaatagttaaatacaacaattttctatattctctgtttacatggtaagatgcatttttaaggacaaaaatgttcccgtttgtttattccgaatcgggtgtgtaagtgttcaattttttcttccataggttttctctaaattgacgataaatgtcttctttgtaaagcttttccatccttattatataataatcacttaaattgtgagagtccgtgcaaaaatgaatagctaccgggtcgtcagtcttccttctaataagtgacaaatttaacacatgcctctgatataaagtagcaccagtttctcccacatatacaattttattgcattttttgcagaacactccataaactacattactggatttgcaattaatgttgtttttaatatatgatatttgttgccgttacaatcctcgaattggttagtttttatgacatatttgacataatatgcatttttagcaccacatggctcgcacaagttttcttttttaaaaaatagattattatgtttcttatgtaccaagatgcttttaaaattcttatctcttctgaaagcTATTAACT---AA--TTG--TACA-TGTA----------CATAC-AT-AATTATACAA-T-ATAA-A----AAGA---GTTA--T-------A----C-AACAAT--T---TT-------C--TATATTC-T-CTG--TTTACA-TGTT--AAGA--CG----CA-TTTTTAAAG--ACAGAAATGTT-CCCGTTTG-TTTATTCC--GA-A-----TGGTGCGTAAGTG--T-TC-ATTTTTTTTTCTT-CATAGGTT--TT-CTCT-AAATCGATGATAAACG-TCT-TCTTTG-TAAAAC-Tctcaagaattttttgtcgattttttaaaaattttatgaattttggaaagtcctttagaatagttt
gi|15 : tcttgagtatgtccggcgtacatcgttcgctaccggtcttcatcagtcgtgtttatttttcttagcaacagaacattagagtactatgacgtcacagtggatannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncatataccaaTAATT---AA--TTAAGTACACTGTAC-----------TAC-AT-A-ATAT-------ACAATAT---AAAAATAGTTA--T-------A----C-AACA-T--T---TT------CC--TATTT-C-T-CTG--TTTACA-TGTT--AAGA--CG----CA-TTTTTAAAGGGACAAAAAATTT-CCCGTTTG-TTTATTCC--GA-ATGG--TGT---GTAAGTG--TTCA-ATTTTT--CTTCCTCATAGG-TACTT-CTCTAAAATCGACGATAAATGTTCCATCTTTGTTAAAGC-TTTT-CCA-C-CC-T-A-TTATAG-GA--A
gi|27 : TTA--T-------AATTGC-AACAATA-T---TT------TCAATAAATAT-TATTT--GTTACA-TGTTTTAAGAATCGATATTA-TTTTAAAAG--ACAG-AATGTTCCCCGTTTGATTTT
gi|12 : agagttaatA-TTTTCAACG--GCAAATATGTT-CCCGTTTG-TTT-----------------AGTCC--AAACG--A-CACATATTCTTCCTTA-GAT----T--TT-CTTTAAAA-CGACGATAAAT-----ATCTTTG-T-CAAG-TTTT-CCA-T-ACAT-A-TTATAG-AA--AAATTGTTTATA-----CGAGAATCTGTGTAGA--A-ATGAA-TAG-CTA--CAA--CGTCATTAGTC-TCTCTTCTTATAAGTGAC-AAATT-CAACGCGTGCCTTTG-ATcgaat
gi|8 : cagtagttaattgtatatacatcaatactaacatggtaaaatcagtttatacaatttgaaaaaaaacacacatgcagaactttG--ACAGAAGTGTT-CC-GCTTG-TTATTTCC--GA-AT----GGTGC-GTAAGTG--TTCA-ATTGTTTC--TTC-CATAGGTT--TT-CTCT-AAATCGACGATAAATG-TC-ATCTTTG-TAAAGC-TTTC-CA--TCCC-T-A-TTATAG-AA--AA-TCACTTAT-ATT-GTGAGAGTCCGTGCAAA--A-ATGAA-TA--CTA-CCAGGTCGTC---AGTT-TTCCTTCTAATAACTGAC-AAATT-TAACACATGCCTCTG-AT----AT-A--AAGTAGCACAGG-TTTTCC-CCACA-T--ATACGA-------T-T--TTA--TTGCA---TTTTTAGC-AG-AACA---CTC-C-A-TAAA--C-TACG--TTACTGGA---TACA-A-TT-AA-TGTA-A--TTTTTA-ATATGATATT-TGTGTC-TT---TT-ACA-ATCTTT-CG-AAT--TGG--TTAG--T-TTT-TATGAC-ATAT-T--GACATAAAATGC--AC--TTTTTA-GC----AC---CACAT--GGC--TCGCa
gi|19 : G--ACAGAAGTGTT-CCCGCTTG-TTTATTCC--GA-AT----GGTGC-GTAAGTG--TTCA-ATTGTTTC--TTC-CATAGGTT--TT-CTCT-AAATCGACGATAAATG-TC-ATCTTTG-TAAAGC-TTTT-CCATC-CC-T-A-TTATAG-AAT-AA-TCACTTAT-ATT-GTGAGAGTCCGTGCAAA--A-ATGAA-TAG-CTA-CCAGGTCGTC---AGTT-TTCCTTCTAATAActtt
gi|4 : --T-CA-ATTTTTTC--TTC-CATAGG-T--TT-CTCTAAA-TCGACGATAAATG-TC-ATCTTTG-TACAGCATGTTACC--T-CC-C---TTATAG-AAT-AA-T-ACTTATAATTTGTGAGAGTCCGTGCAAA--A-ATGAA-TAG-CTA-CCGGGTCGTCA---GTC-TTCCTTCTAATAAGTGACAAATTT-TAACACATGCCTCTATAT-----T-A--AAGTA-CACCAG--TTCTCTCCACA-T--ATACGA-------T-T--TTA-TTTGC---TTTTTTTGC-AG-AAAA---CTC-C-ATT-AA--CTTACACTTTACTG-GATTTACA-A-TT-AATTGTA-A--TTTTTA-AT-TGATAAT-T-TGTTGCC--GTT-ACA-ATC-CT-C--AATGGTGG--TTAG--T-TT--TATAAC-ATATTT--GACTTAAT-TAGCATT--TTTTTA-GC----AC---CACATTTGGCTTTCGCACAAGTTTTTTCTTTTTTCTTT-AAAAA-----TAGATTTATTGTGTTTCTTATGTACCAAGATGTTCTTTTAAAATTT---T-CTATCTCT-TGCTGATAAGCTACT-ATGGGC
gi|10 : GAGAGTCTGAGTA--C-AAATGAA-TTG-CTA-CCGGGTCACCA--A-TT-TTCCTTCTAATAAGTGTCAttatttggaaagcattttttgacagcggtcgagtttcaagaatttttatttgtcgattttgttaaaattttcattgaatattgggaaagtcctttagaatagtttactacaaggggaacacgattattttaccgctttctctttttctgtagtta
gi|16 : GAGAGTCCGTGCAAA--A-ATGAA-TAG-CTA-CCAGGTCGTC---AGTT-TTCCTTCTAATAAtcaagttgccccagttccacacttatgcaattcatatttatttattttgaatttattacaaacaattccataaaatacgtttattaatataatttttgatatgatatttgttgccgtcacaatcctagaattggttacttttaataatatattgacataaaatgcaaatattgcaccacacagcttgcccaggttttcttttctaaaaaaaaaaaccagattagaatgtttcttgtgtacataaatgttttttgattttgtgtgattttttgaaa
gi|26 : TCCTAATAAGTGACAAAATTCTAACACATGCCTCTG-A-----AT-A--AAGTAGCACCAGTTTTCTC-CCACA-T--ATAC-A-----ATT-T--TTA--TTGCA-----TTTTGCAAG-AACA---CTC-C-A-TAAA--C-TAC---TTAATGTAAcaactccatactacgttactgaatacatattaatgtaatttaatatgattttgtgttcttttacacactttcgaattggttagtttttatgcatattgactaaatggcacgttttttaggcacccacatggctcgcctatttctgtagtttaggagat
gi|10 : CTTCTA-ATAAGTGTCATCAAGTTGCCCCAG-TT-----CCACACT-TATGCAATTCATATT-TATTTATTTTG-AATTTATT--AC-A--AACA---ATTCC-A-T-AA-------A--ATAC----GTTTA-----TT-AA-TAT--AA-TTTTTG-ATATGAT-AT-T-TGTTGCC--GTC-ACA-ATC-CT-AG-AAT--TGG--TTAC--T-TTTA-ATAAT-ATAT-T--GACATAAAATG-CAAA--TATT---GC----ACCA-CAC----AGC--TTGCCCAGG-TTTT--CT-TTTCTAAAAAAAAAAAC-CAGATTA-GAATGTTTCTTGTGTACATAAATGTTT-TTTGAT---TTTGT-GTGATT-T-T-TTGAAA
gi|35 : gagagtctgagtacaaatgaattgctaccgggtcaccaattttc-A--AAGTCACATCAC-ATTTTC-CCACA-TAAATACGA-------T-T--CTATT----GA-TTTTTTTGC-AA-AACA---
gi|11 : -----ATTAT--TTATTTTG-AATTATT----C-A--AACAATTCC--C-A-T-AA-------A--ATATCG---TTTA---A-TT-A--TAT--AA-TTTTTG-ATATGAATAT-T-TGTT-GCCGGTC-ACA-ATC-CT-AG-AAT--TGG--T-----TACTTTTATAAT-ATAT-T--GACATAAAATG-CAAA--TATT---GC----AC---CACACA-AGC--TTGCCCAGGTTTCT-----TTTCTAAAAAAAAAAACCAAGATTA-GAATGTTTCTTGTGTACTAA-ATGTTT-TTTGAT---TTTGT-GTGATT-T-T-TTGAAA
gi|16 : ataaagcccatcaagttccacatatcgcaatttcatattCAGTTTTCCTTCT-AATAACAA--CT--CCA-T-A---C-TACG--TTACTG-AAT--ACATA-TT-AA-TGT--A--ATTT-A-ATATGATT-T-TGTGTT-CT--TTT-ACACACT-TT-CG-AAT--TGG--TTAG--T-TTT-TATG-C-ATAT-T--GAC-TAA-ATGGC-ACGTTTTTTAGGC----ACCCACAT----GGC--TCGCCTA----TTT--CTGTcctgagaactgtaaattttttggaa
6 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|17 ): TTTTTTTATTGAATAAATTCTTTTATATGTACCAAAATGCCTCTCTTCCGAAATGCTACATGTAATATGGGCGTATTTCTAAAAGCCTTCTTGGAGTGGTCAAAGTTCTCAAATTTTTTTTTTTTTTGAATATTGGAAAGTCCATTGGAAAGTCCTTTATATCAGAAAAGGAACGCGATTACACCGTTTCGTCTTTTTACTGTAGTT
Unaligned ( gi|20 ): TCTTTTATAGTTACCAAAATGCCTCTTCTTCCGAAATGCTACATGTTAATATGGGCGTATTTTTAAAAGCCTTCTTGGACGTGGTCAAAGTTCTCAAAATTTTTTTTTTTGAATATTGGAAAGTCCATTGGAAAGTCCTTTATATCAGAAAAGGAACGCGATTACACCGTTTCGTCTTTTTACTCGTAGTTACA
Unaligned ( gi|21 ): CAAGACAGAGGGGAAGTATGAACACACAGCAGTTGACTCCTGACCTATGTGTGACGGTCATGATGAACGGTGATGTGCGAAGAAACAGTGATAAATTAACCTAATCACCTAACATAGAGTGGTAGACGTAATTTGAACCATTATGATAATTATAATATTGATGTGGCATTTAA
Unaligned ( gi|33 ): AGACGTAATCTGAACCACTATACTAATTTAAAATTTATGTGGCATTTAAGAGTGGTTTATATTNATGATT
Unaligned ( gi|34 ): ATATATTACAAAGTCTCTTTCATCGGCAAGTTAAAATTAAAAAAAAATAACTCTAAACACTTTCTT
Unaligned ( gi|36 ): ATATATAAAGTCTCTTTCATAGGAGTAAAATTAAAAAACTCTGAACACTTTATT
Alignments
lowQualScore : 1111 11111111111 111 111111 11111 9999999999999999 44444 111 1111 888888888 4444444444444444444444444444444444444444444 111 11 22222222222222 666 222222222222 22222222222 1111 2222222 11 1 2 1 111 2 1 222222 1 3333333 11 11111 2 11 1111 1 1111111 1 222222 1111 2 111 444444 11 1
lowQualScore : 2 2 2 2 33 4 2 2 2 4444 2 1111 2 2 2 444 2 2 33 666 2 2 66 2 444 555 33 5 2 2 2 5 33 33333333333 33 5 2 2 33 44 3 3 3 4 4 4 4 66 9999 4 4 4 4 4 66 4 66 777 4 222 4 4 66 555555 5 999999 22222 5 8888888888888888 5 77 1 11111 77 000 4444 5 5 3 5 66 000000000 4 66 5555555555555555555555555555555555555555555 7 5 5 000 77 77 5 5 66666666666666 5 3 444 66 444444444444 5 88888888888 888 8 2 99999 2 5 5 66 66 0000 4 1 55 4 1 666 4 2222222 4 4 33 55 2 6 55 0 55555 4 4 4 7 4 66 66 6 555 66 4 4 4 4 4 4 9 4 8 5 222222 55 5 5 8 5 0 3333333 4 66 99 66666 2 4 2 4 1 99 55 66 77 0 2 5 5 5 5 5 9999 5 0 66 0 9999 5 5 2 666 5 5 666 66 66 4444444 5 5 5 0 5 000000 3 5 0000 5 9999 66 1 2 2 000 5 2 222222 6 1 3 6 3 2 1 66 6 6 6 7 0
lowQualScore : . . . . .. . . . . .... . .... . . . ... . . .. ... . . .. . ... ... .. . . . . . .. ........... .. . . . .. .. . . . . . . . .. .... . . . . . .. . .. ... . ... . . .. ...... . ...... ..... . ................ . .. . ..... .. ... .... . . . . .. ......... . .. ........................................... . . . ... .. .. . . .............. . . ... .. ............ . ........... ... . . ..... . . . .. .. .... . . .. . . ... . ....... . . .. .. . . .. . ..... . . . . . .. .. . ... .. . . . . . . . . . . ...... .. . . . . . ....... . .. .. ..... . . . . . .. .. .. .. . . . . . . . .... . . .. . .... . . . ... . . ... .. .. ....... . . . . . ...... . . .... . .... .. . . . ... . . ...... . . . . . . . .. . . . . .
lowQualScore : 9 5 4 2 11 4 2 1 1 5555 1 1111 5 5 5 444 5 5 77 999 7 7 88 9 555 111 99 7 9 9 9 7 99 99999999999 77 7 9 9 99 66 6 6 6 0 0 0 4 11 4444 4 4 4 4 4 11 4 11 888 4 222 4 4 11 222222 1 999999 55555 7 7777777777777777 7 99 7 33333 99 000 2222 7 0 1 0 99 444444444 6 11 0000000000000000000000000000000000000000000 4 0 0 000 77 99 7 7 00000000000000 7 7 000 99 000000000000 0 88888888888 888 4 0 99999 5 0 0 99 99 6666 4 0 00 0 3 444 0 1111111 4 0 99 55 5 0 55 4 99999 0 0 0 8 4 11 11 5 777 11 4 4 4 4 4 4 1 4 5 0 111111 44 0 0 8 0 2 7777777 4 11 99 44444 0 4 9 0 3 44 66 11 88 1 5 0 0 0 0 0 0000 0 4 99 0 0000 0 0 5 222 0 0 222 99 99 0000000 0 0 0 4 9 555555 2 0 6666 0 6666 99 0 3 4 000 7 5 888888 7 0 7 7 5 5 0 88 7 7 7 3 0
consensus : TCTA-AACACTTTC-TT-GAA-ATATT--TCGA-C-CGCGT-TAC-CG----G-TCTT----CATCAGT-C-G-T---GTTT-A-TT--T---TCCG-TAGC-AA--C-ACAAC--GCACG-A--CTA-C-ACA-CA-T-TAG--AGTA--------C--T--GTG-A-CG-TCAC--AG--T-GGA-TA-TTA-AG-TT-GAAC-AA--TAA----CG-TCA-CAG-TTGAAA-TT-ACGCG--CAAAA-CA--TTT---G-AAAA---TAG-T-AAG--AGTC-T----ATGAAATTAACAA---T--AGC-----TAAGTTAGCCGC-GTCGGC--AT------G-----ATAA-GCG--TAGAATGAAA-A-ATA--TGTA---AGTAAT----GGTA-CAAAATA-TAGGGAAATT-ACGAACAC--ATA-GCAGTT-GACTACT--GACCTGCGT------CAA----AA-ATGCTTTCC--AAA--------ATATAC-CAT-TAGTAATT---AAA-TTA--TACA-TGTA-CA----------T---ACATAATTATACAAT-ATAA-A-AAGAGTTA--T-------A----C-AACAAT-----------T---TTTCTATA--TNCTCTGT-TTACA-TGTT--AAGA--CG----CA-TTTTTAAA--GACAGAAATGTT-CCCGTTTGTTTA--TTCCGA-AT-G-GTNGCGTAAGTG-TTCAA-TTTTTTCCTTC--CATAGGTT--TTCTCTAAAATCGACGATAAATG--T--C-ATCTTTG-TAAAGC-TTTTCCAT-CC-T--ATTATAG--AATAATCACTTATAA-TTGTGAGAGTCCGTGC--A-AA-A-ATG-AATAG-CTA-CCGGGTCGTC-AGTC-TTCCTTCTAATAAGTGACAAAATT-TAACACATGCCTCTGAT-A---TAAAGTAGCACCAG-TTTCTC-CCACA-T-A-TACGA-----ATT-T--TTATTTTGCA--TTTTTTTGC-AGAACA-CT-CCATA-AAC-TACA--TTACTG-GATTTACA-A-TT-A-A-TG-T--A-TTTTTA--ATATGA-T-A--TT-TGT-TGCC-G-TTACA-ATC-CT-C-GAAT--TG--GTTA----GT-TTT-TATGA-CATA-TTGACATAANATGCCA-ACTTTTTAG-C----ACC-ACA--C-GGC--TCGCACAAG-TTT---TCT-TTTCTTTAAAAAA----T-AGA-TTATTATGTTTCTTATGTACCAAGATGTT-TTTTAAATTTGTNTGATTCT-T-CTGAAAAGCTACT-ATGGGCA
Reference ( family-737 ) : TCTA-AACACTTTC-TT-GAA-ATATT--TCGA-C-CGCGT-TAC-CG----G-TCTT----CATCAGT-C-G-T---GTTT-A-TT--T---TCCG-TAGC-AA--C-ACAAC--GCACG-A--CTA-C-ACA-CA-T-TAG--AGTA--------C--T--GTG-A-CG-TCAC--AG--T-GGA-TA-TTA-AG-TT-GAAC-AA--TAA----CG-TCA-CAG-TTGAAA-TT-ACGCG--CAAAA-CA--TTT---G-AAAA---TAG-T-AAG--AGTC-T----ATGAAATTAACAA---T--AGC-----TAAGTTAGCCGC-GTCGGC--ATC----AG-----ATAA-GCG--TAGAATGAAATA-ATA--TGTA---AGTAAT----GGTA-CAAAATA-TAGGGAAATT-ACGAACAC--ATT-GC-----GACTACT--GACCTGCCT------CAA----AA-ATGCTTTCC--AAA--------ATATGC-CAT-TAGTAATT---AAA-TTA--TACA-TGTA-CA----------T---ACATAATTATACAAT-ACAATATAAGAGTTA--T-------A----C-AACAAT-----------T---TTTCTATA--TACTCTGT-TTACA-TGTT--AAGA--CG----CA-TTTTTAAA--GACAGAAATGTT-CCCGTTTGTTTA--TTCCGA-AT-T-GTNNCGTAAGTG-TTCAA-TTTTTTCCTTC--CATAGG-T--TTCTCTAAAATCGACGATAAATG--T--C-ATCTTTG-TAAAGC-TTTTCCAT-CC-T--ATTATAG--AATAATCACTTATAA-TTGTGAGAGTCCGTGC--A-AA-A-ATG-AATAG-CTA-CCGGGTCGTCAAGTC-TTCCTTCTAATAAGTGACAAAATT-TAACACATGCCTCTGATAA---TAAAGTAGCACCAG-TTTCTC-CCACA-TAA-TACGA-----ATT-T--TTATTTTGCA--TTTTTTTGC-AGAACA-CTCCCAT--AAC-TACA--TTACTG-GATTTACA-A-TT-A-A-TG-T--A-TTTTTA--ATATGA-T-A--TT-TGT-TGCC-G-TTACA-ATC-CT-C-GAAT--TG--GTTA----GT-TTT-TATGA-CATA-TTGACATAANATGCCA-ACTTTTTAG-C----ACC-ACA--T-GGC--TCGCNCAAGTTTT---TCT-TTTCTTTAAAAAAAAACT-AGA-TTATTATGTTTCTTATGTACNAAGATGTT-TTTTAAATTTGTNTGATTCT-T-CTGAAAAGCTACT-ATGGGCA
gi|1 : TCTATAACACTTTC-TT-GAAGATATT--TCGA-CACGCGT-TACTCT----G-TCTT----CATCAGT-C-G-T---GTTTTA-TT--T---TCCG--AGC-AA--CCACAAC--GCACA-AAACTA-C-ACA-AT-T-TAG--AGTA--------C--T--ATGGA-CGGTCAC--AG--T-GGAGTA-T-A-AG-TT-GAAC-AA--TAA----CG-TAAACAG-TTGAAA-T--ACGCG--CAAAAACA--TGT---G-AAAAA--TAG-T-AAG--AGTC-T----ATGAA-TTAACTA---A--AGC-----TATGTTAGCCGCCGTCGG-----------G-----ATAAAGCGCTTAGAATGAAATACATA--CGTAGTAAGTAATTTGTAGCA-AAAAATA-TAGGGAAATTTACGAACAC--ATCAGCAGTT-GACTACT--AGCCTAT---------GA----TA-ATA-TTTAC--AAACATGAACAGTATAC-CAT-TAGTAATT---AA--TTA--TACA-AGTA-CA----------T---ACATAATTATACAATTATAA-A-AAGAGTTA--CTGGCAAAA----C-AATAATAATATAACACAT---ATAATATA--TA---TAT-TTACA-TGTT--AAGA--CG----CA-TGTT-AAA--GACAGAAATGTT--CCG-TTGTTTA---TCCGA-ATGT-GGTGCGTAAGTGATTCAA-TTTTTT-CTTC--CATA-G-T--TTCTCT-AAATCGACGATAAATG--T--C-A---CTG-TTAAGC-TTTTCCAT-CC-CTAATTATAG--AATAATCACTTAT-A-TTGTGAGAGTCCGTGCCTATGA-A-ATGAAATAGACTA-CCGGGTCGTC-AGTCATTCCTTCTAAT-AGTGAC-AAATT-AAACACATGCCTCTGAT-A---TAAAGTAGCA-CAG-TTTCTC-CCACA-TAT-TACGA-------T-T--TTA--TTGC---TTTTTTTGC-AGGACA-CT-CCATAAAAC-TACA--TTACTG-GATTAACA-AGTTGA-A-TA-TTAA-TTTTTA--ATATGA-T-ATCTT-TGT-TGCC-GTTTACA-ATC-CTGCGGAAT--TGGAGTTAGATTGT-TTT-TATGACCATAGTTGACAT-ATATGC---ACTTTTTAG-CCCAAACC-ACA--T-GGC--TCGCACAAG-TTT---TCT-TTT-TTTAAAAAA----T-AGA-TTATTATGTTTCTTATGTACAAGAATGTC-TTTTAAAT---TCTTATTCTCT-CTG-AAAGCTACTGATGG
gi|1 : aaagtctctttcatcggagtaaaatttgaaacccacaaacACT-CT--GACC-GCCT------CAA----AA-ATGCTTTCC--AAAC-------ATATGC-CAT-CAGTAcatatgtttggaaagcatttttgaggcggtcagagtttctcaagaattttttgtcgatttttaaaattttatgaatattggaagtcctttagaatagtttacgtacaagggaccgatt
gi|10 : aaagtctctttcatcggagtaaaatttgaaacccacaaactctataacactttcttgaagatatttcgacacgcgttactctgtcttcatcagtcgtgttttattttccgagcaaccacaacgcacaaaactacacaatttagagtactatggacggtcacagtggagtataagttgaacaataacgtaaacagttgaaatacgcgcaaaaacatgtgaaaaatagtaagagtctatgaattaactaaagctatgttagccgccgtcgggataaagcgcttagaatgaaatacatacgtagtaagtaatttgtagcaaaaaatatagggaaatttacgaacacatcagcagttgactactagcctatgataatatttacaaacatgaacagtataccattagtaattaattatacaagtacatacataattatacaattataaaaagagttactggcaaaacaataataatataacacatataatatatatatttacatgttaagacgcatgttaaagacagaaatgttccgttgtttatccgaatgtggtgcgtaagtgattcaattttttcttccatagtttctctaaatcgacgataaatgtcactgttaagcttttccatccctaattatagaataatcacttatattgtgagagtccgtgcctatgaaatgaaatagactaccgggtcgtcagtcattccttctaatagtgacaaattaaacacatgcctctgatataaagtagcacagtttctcccacatattacgattttattgctttttttgcaggacactccataaaactacattactggattaacaagttgaatattaatttttaatatgatatctttgttgccgtttacaatcctgcggaattggagttagattgtttttatgaccatagttgacatatatgcactttttagcccaaaccacatggctcgcacaagttttctttttttaaaaaatagattattatgtttcttatgtacaagaatgtcttttaaattcttattctctctgaaagcGAGAGTCTGAGT--A-CA-A-ATG-AATTG-CTA-CCGGGTCACCAA-TT-TTCCTTCTAATAAGTG--------------------TC-----A---TCAAGTTGCCCCAG-TT-----CCACACTTA-TGCAATTCATATT-TATTTATTTTGAA--TTTATT-AC-A-AACA-ATTCCAT--AA-----A--ATAC----GTTTA-----TT-A-A-TA-T--AATTTTTG--ATATGA-T-A--TT-TGT-TGCC-G-TCACA-ATC-CT-A-GAAT--TG--GTTA----CT-TTT-AATAA-TATA-TTGACATAAAATGCAA-ATATT---G-C----ACC-ACA--C-AGC--TTGCCCAGG-TTT---TCT-TTTCTAAAAAAAAAAACC-AGA-TTAGAATGTTTCTTGTGTACATAAATGTT-TTTTGATTTTGTGTGATT-T-T-TTGAAAttctcaagaattttttgtcgatttttaaaattttatgaatattggaagtcctttagaatagtttacgtacaagggaccgatt
gi|11 : -----ATTAT--TTATTTTGAA--TTATT---C-A-AACAATTCCCAT--AA-----A--ATATCG---TTTA---A-TT-ATA-TA----A-TTTTTG--ATATGAAT-A--TT-TGT-TGCCGG-TCACA-ATC-CT-A-GAAT--TG--GTTA-----C-TTT-TATAA-TATA-TTGACATAAAATGCAA-ATATT---G-C----ACC-ACA--CAAGC--TTGCCCAGG--TT---TCT-TTTCTAAAAAAAAAAACCAAGA-TTAGAATGTTTCTTGTGTACTAA-ATGTT-TTTTGATTTTGTGTGATT-T-T-TTGAAA
gi|12 : ataaagcccatcaagttccacatatcgcaatttcatattA-TTTTCAAC--GGCAAATATGTT-CCCGTTTGTTTA--GTCCAA-A--C-GACACATA------------TTCTTCCTTA--GAT----T--TTCTTTAAAA-CGACGATAAAT--------ATCTTTG-TCAAG--TTTTCCATACA-T--ATTATAG--AAAAATTGTTTATA-----CGAGAATCTGTGT--A-GA-A-ATG-AATAG-CTA-CAACGTCATT-AGTC-TCTCTTCTTATAAGTGAC-AAATT-CAACGCGTGCCTTTGATAcctgagaactgtaaattttttggaa
gi|13 : cagtagttaattgtatatacatcaatactaacatggtaaaatcagtttatacaatttgaaaaaaaacacacatgcagaactttTCTA-AACACTTTC-TTTGAA-ATATT--TCGACC-CGCG--TAC-CG----G-TCTT----CATCAGT-C-GTT---GTTT-A-TT--TTTATCCG-TAGCAAA--C-AC-AC--CCACA-A--CT--C-ACA-CA-T-TAGTAAGTA--------CTTT--ATG-A-CG-TCACAAAG--T-GGA-TATTTA-AG--T-GAAC-AAATTAATTACCGTTCA-CAG-TTGAAA-TTAACGCGGACAAAA-CA--TTTAGGA-AAAA---TAG-T-AAAGTAGTC-G----ATG-AATTAACAAAGCT--AGCCTAATTAAGTTAGCCGC-GGCG
gi|14 : taaaattttttaaaaaaaaaaaaataaaaaaaaccgtctaccacTA-GACACTTTC-TT-GAA-GTATT--TTGA-C-TTTGG-TAT-CG----T-TCTT----CCTCAGT-C-A-T---GTTT-A-TT--T---T-----------------AAA--GCAAG-A--CTA-C-ATA-CA-T-AAG--ATTACTGACTAGC--T--GTG-A-CA-TCAC--AA--T-GGG-TA-TTACAT-TT-GATC-AG--TAA----CA-TCA-CAG-TTGAAA-TT-ACATG--CAAAA-CA--ATT---G-AAAAAGGTAATT-AAG--AGTC-TCATAATGAAATTAACAA---T--GGC-----T
gi|15 : gacaaattctttaatttgaaatatatgtatttacaaatgtacatataTAATT---AA--TTAAGTACACTGTA-C-----------T---ACATAAT-ATACAAT-ATAA-A-AATAGTTA--T-------A----C-AACA-T-----------T---TTCCTATT--T-CTCTGT-TTACA-TGTT--AAGA--CG----CA-TTTTTAAAGGGACAAAAAATTT-CCCGTTTGTTTA--TTCCGA-AT-G-GTGT-GTAAGTG-TTCAA-TTTTT--CTTCCTCATAGG-TACTTCTCTAAAATCGACGATAAATG--TTCC-ATCTTTGTTAAAGC-TTTTCCAC-CC-T--ATTATAG--GA
gi|16 : GAGAGTCCGTGC--A-AA-A-ATG-AATAG-CTA-CCAGGTCGTC-AGTT-TTCCTTCTAATAAa
gi|16 : AACA-ACTCCAT--A-C-TACG--TTACTG-AAT--ACATA-TT-A-A-TG-T--A-ATTT-A--ATATGA-T----TT-TGTGTTCT-T-TTACACACT-TT-C-GAAT--TG--GTTA----GT-TTT-TATG--CATA-TTGAC-TAA-ATGGCACGTTTTTTAGGC----ACCCACA--T-GGC--TCGCCTA----TT---TCT-caactccatactacgttactgaatacatattaatgtaatttaatatgattttgtgttcttttacacactttcgaattggttagtttttatgcatattgactaaatggcacgttttttaggcacccacatggctcgcctatttctgtagtttaggagat
gi|18 : gagagtccgtgcaaaaatgaatagctaccaggtcgtcagttttccttctaatTA-AACACTTTCCTT-GAA-A-ATT--TCGAAC-CGCGT-TAC-CG----GGTCTT----CATCAGT-C-G-T---GTTT---TT--T---TCCGCTAGC-AAA-C-ACAAC--GCAC--A--CTA-C-ACA-CA-T-TAG--AGTA-----------T--ATGCA-CG-TCAC--AGGGT-GGA-TA-TTA-AG-TT-GAAC-AA--TAA----CG-TCA-CTG-TTG-AA-TT-ACGTG---GAAA-CA--TTT---G-AAAA---TAG-T--AG--AATC-gtagtttaggagat
gi|19 : actct--GACAGAAGTGTT-CCCGCTTGTTTA--TTCCGA-AT-G-GTG-CGTAAGTG-TTCAA-TTGTTTC-TTC--CATAGGTT--TTCTCT-AAATCGACGATAAATG--T--C-ATCTTTG-TAAAGC-TTTTCCATCCC-T--ATTATAG--AATAATCACTTAT-A-TTGTGAGAGTCCGTGC--A-AA-A-ATG-AATAG-CTA-CCAGGTCGTC-AGTT-TTCCTTCTAATAAgacaatagt
gi|2 : TCTA-AACACTTTC-TT-GAA-ATATT--TCGA-C-CGCGT-TAC-CG----G-TCTT----CATCAGT-C-G-T---GTTT-A-TT--T---TCCG-TAGC-AA--C-ACAAC--GCACA-A--CTA-C-ACA-CA-T-TAG--AGTA--------C--T--ATG-A-CG-TCAC--AG--T-GGA-TA-TTA-AG-TT-GAAC-AA--TAA----CG-TCA-CAG-TTGAAA-TT-ACGCG--CAAAA-CA--TTT---G-AAAA---TAG-T-AAG--AGTC-T----ATG-AATTAACAA---T--AGC-----TATGTTAGCCGC-GTCGGC--AT------------ATAA-GCG--TAGAATGAAATACATACGTGTA---AGTAAT----GGTA-CAAAATA-TAGGGAAATT-ACGAACACTGATTCGT-----AAC-ACT--GACC-GCCT------CAA----AA-ATGCTTTCC--AAA--------ATAT-C-CATCTAGTAATT---AAA-TTA--TACA-TGTATCA----------T---ACAT-ATTAT----T-ACAG-ATAAGAGTTA--T-------A----C-AACAAT-----------T---TTTCTAGA--TATTCTAA-TTAAA-TGTT--AAGA--CG----CA-TTTTTAAA--GACAGAAATGTT-CCCGTTTGTTTT--ATGTGA-AT-T-ATTCCGTAAGTG--TCAATTTTTTTCTTTC--CATAGG-T--TTCTCTAAAATCGACGATAAATG--T--CGATCTTTG-TACAGC-TTTTCC-T-CC-T--ATTATAG--AA-AATCACTTATAA-TTGTGAGAGTCCGTGC--A-AACACATG-AATAG-CTATCCGGGTCGTCAAGTC-TTCCTTCTAATAAGTGACAAAATT-TAACACATGCTTCTGATGAGGGTAAAGTAGCACCAG-TTTCTC-CCACA-TAA-TACGA-----ATT-T--TTATTTTGCAATTTTTTTTGC-AGAACA-CT--CAT--AAC-TACA--TTACTGCAATTTACA-A-TT-A-A-TG-T--A-TTTTAA--ATATGATT-A--TTGTGT-T-TC-G-TTATA-ATC-CT-C-GAAT--TG--GTTA----GTATTTGTATGA-CATA--TGACATAATATGTCG-ACTATTTAG-C----ACC-AC-----GGC--TCGCACAAGTTTT---TCTGTTTCTTTAAAAAA----T-AGA-TTCTTGTGTTCCTTATGTGCCAAGATGTT-CTTTAAA-TTGTAC--TTCT-T-CTGAAAAGCTACT-ATGGGCA
gi|21 : -CAAGACA-GAGGGGAAGT-ATGAACAC--ACA-GCAGTT-GACTCCT--GACCT
gi|22 : --T--GTG-A-TG-TCAC--AA--T-GAA-TA-TTA-AC-TT-TATC-AG--TAA----CA-CCA-TAG-TTGAAA-TT-ACGTG--CAAGG-CA--TTT---G-TAAA---AAG-T-AAG--AATC-T----ATGAAATTAACAA---TACAGC-----TTACCTACCCCC-CTCGACAAATCCCCAAGAAGGAATAA-GCG--TAGAATAA---A-ATA--TATA---AGTAAatgtgtgacggtcatgatgaacggtgatgtgcgaagaaacagtgataaattaacctaatcacctaacatagagtggtagacgtaatttgaaccattatgataattataatattgatgtggcatttaa
gi|23 : A-AACACTTTT-CT-GAA-ATATTTCTCGA-C-C-CGTATAC-CGGGTCG-TTGT----CATCAGT-CAG-TTTGATTT-A-TTAAT---CCCG-TAGC-GA----ACAA---ACA-G-A--CGG-A-ACA-AA-T-TAT--A-TA--------C--T--
gi|24 : aaactcTA-AACACT--------GA-ATATT--TTGA-C-CACAT-TAC-CA----G-CCCTA---CCTTAGTCC-G-T---GTTT-A-TT--TA--TAC--TAGC-Aaaacacatcaattatgtagttttgactatgaaacgtca
gi|25 : atattataatttatgaaaaagtctcttatatccaagaaaaatgtaaaaagctctaaagctaTA-AACACTTTC-TT-AAA-ATATT--TCAA-C-CG--------------G-TCTT----CATCAGT-T-G-T---GTTT-A-TT--T---TCCG-TAGC-AA--A-ACAAC--GCACG-G--TTA-C-ATA-CA-T-AAG--AGTA--------C--T--GTG-A-CA-TCAC--AA--T-GGA-AA-GTA-AG-TT-tatcataaatgcaat
gi|26 : taaaaactgggaacctgTCCTAATAAGTGACAAAATTCTAACACATGCCTCTGA--A---TAAAGTAGCACCAGTTTTCTC-CCACA-T-A-TAC-A-----ATT-T--TTA--TTGCA-----TTTTGCAAGAACA-CT-CCATA-AAC-TAC---TTAATG-atgca
gi|27 : TTA--T-------AATTGC-AACAATA----------T---TTTCAATAAATATTATTTGTTACA-TGTTTTAAGAATCGATATTA-TTTTAAAA--GACAG-AATGTTCCCCGTTTGAT----TTTCGA-AT-taa
gi|28 : agagttaatTAC-GCG--TTGAATCAAA-----A--TATA---AGTAAT----CTTA-CAAGATA-GAGGAAAAGT-ATGAACAC--A
gi|29 : tttttggataattattctttggtttaacgatTTC-TC-TAA-ATATT--TCAC-C-CATGT-TAC-CA----A-CCTTCCTGCATCAG----------GTTC-A--T--T---GCTA-TAGC-AA--C-AAACC--ACATG-A--CCAGC-ATA-CA-TCTTG--AA-A--------T--C--GTG-A-CA-TCAC--Acagcagttgactttgaacca
gi|3 : ATA-TAGGGAAATT-ACGAACAC--ATA-GCAATT-GACTACT--GACCTATGTGATTTACAA----AC-ATG---------AA--------ATATTA-CAT-TAGTAATTTTAAAA-TTG--TACA-TGTA-CAATGCAGTACAT---ACATAATTATACAAT-ATAA-A-AATAGTTAAAT-------A----C-AACAAT-----------T---TT-CTATA--TTCTCTGT-TTACA-TGGT--AAGA--TG----CA-TTTTTAAG--GACAAAAATGTT-CCCGTTTGTTTA--TTCCGA-AT-CGGGTGTGTAAGTG-TTCAA-TTTTTT-CTTC--CATAGGTT--TTCTCT-AAATTGACGATAAATG--T--C-TTCTTTG-TAAAGC-TTTTCCAT-CCTT--ATTATAT--AATAATCACTTA-AA-TTGTGAGAGTCCGTGC--A-AA-A-ATG-AATAG-CTA-CCGGGTCGTC-AGTC-TTCCTTCTAATAAGTGAC-AAATT-TAACACATGCCTCTGAT-A---TAAAGTAGCACCAG-TTTCTC-CCACA-T-A-TACAA-------T-T--TTA--TTGCA---TTTTTTGC-AGAACA-CT-CCATA-AAC-TACA--TTACTG-GATTTGCA-A-TT-A-A-TGTT--G-TTTTTAATATATGA-T-A--TT-TGT-TGCC-G-TTACA-ATC-CT-C-GAAT--TG--GTTA----GT-TTT-TATGA-CATATTTGACATAATATG-CA---TTTTTAG-C----ACC-ACA--T-GGC--TCGCACAAG-TTT---TCT-TT--TTTAAAAAA----T-AGA-TTATTATGTTTCTTATGTACCAAGATGCT-TTTAAAATTCTTAT--CTCT-T-CTG-AAAGCTACT-ATGGGCA
gi|3 : ACT-CT--GACC-GCCT------CAA----AA-ATGCTTTCCAAAAA--------ATATGC-CCA-TAGTAtattttttggaaagcatttttgaggcggtcagagttctcaagaattttttgtcgattttttaaaaattttatgaattttggaaagtcctttagaatagttt
gi|30 : atatagggaaattacgaacacatagcaattgactactgacctatgtgatttacaaacatgaaatattacattagtaattttaaaattgtacatgtacaatgcagtacatacataattatacaatataaaaatagttaaatacaacaattttctatattctctgtttacatggtaagatgcatttttaaggacaaaaatgttcccgtttgtttattccgaatcgggtgtgtaagtgttcaattttttcttccataggttttctctaaattgacgataaatgtcttctttgtaaagcttttccatccttattatataataatcacttaaattgtgagagtccgtgcaaaaatgaatagctaccgggtcgtcagtcttccttctaataagtgacaaatttaacacatgcctctgatataaagtagcaccagtttctcccacatatacaattttattgcattttttgcagaacactccataaactacattactggatttgcaattaatgttgtttttaatatatgatatttgttgccgttacaatcctcgaattggttagtttttatgacatatttgacataatatgcatttttagcaccacatggctcgcacaagttttcttttttaaaaaatagattattatgtttcttatgtaccaagatgcttttaaaattcttatctcttctgaaagcTTC-TC-TAA-ATATT--TCAC-C-CATGT-TAC-CA----A-CCTTCCTGCATCAG----------GTTC-A--T--T---GCTA-TAGC-AA--C-AAACC--ACATG-A--CCAGC-ATA-CA-TCTTG--AA-A--------T--C--GTG-A-CA-TCAC--Atctcaagaattttttgtcgattttttaaaaattttatgaattttggaaagtcctttagaatagttt
gi|31 : TCTA-AACACTCTC-TT-GAA-ATATT--TCGA-C-CGTAT-TAC-CA----G-TTTT----CCTCAGT-C-G-T---GTTT-A-TT--T---TC
gi|32 : cagtcttttttatcggagtaaaatttaaaaaaaacaacAA-ATATT--T--A-C-CGCAT-TAC-CA----G-TTTT----CCTCAAT-C-G-T---GTTT-A-T
gi|35 : aaaaaaccaaaacctctagattagactaaaatactgaAAAGTCACATCAC-ATTTTC-CCACA-TAAATACGA-------T-T--CTATT--G-A--TTTTTTTGC-AAAACA-
gi|37 : ---TCTG-TAGC-AA--C-ACGAC--TCACG-A--CCA-C-ATA-C--C-TAG--AGTA--------T--T--GTG-A-CG-TCAC--AG--
gi|38 : CCA-AACACTTTC-TT-GAA-CTATG--TTGA-C-CGCAT-TTC-CG----G-TGTT----gg
gi|39 : aacgTCTA-AACACTTTC-TT-GAA--TATT--TCGA-C-CGCGT-TAC-CG----G-TCCT----
gi|4 : cccTCAA-TTTTTTC-TTC--CATAGG-T--TTCTCTAAA-TCGACGATAAATG--T--C-ATCTTTG-TACAGCATGTTACCT-CC-C---TTATAG--AATAAT-ACTTATAATTTGTGAGAGTCCGTGC--A-AA-A-ATG-AATAG-CTA-CCGGGTCGTC-AGTC-TTCCTTCTAATAAGTGACAAATTT-TAACACATGCCTCT-ATAT---TAAAGTA-CACCAG--TTCTCTCCACA-T-A-TACGA-------T-T--TTA-TTTGC---TTTTTTTGC-AGAAAA-CTCCATT--AACTTACACTTTACTG-GATTTACA-A-TT-A-ATTG-TA-A-TTTTTA--AT-TGA-TAA--TT-TGT-TGCC-G-TTACA-ATC-CT-C--AATGGTG--GTTA----G--TTT-TATAA-CATATTTGACTTAAT-TAGCA-TTTTTTTAG-C----ACC-ACATTT-GGCTTTCGCACAAGTTTTTTCTTT-TTTCTTTAAAAA-----T-AGATTTATTGTGTTTCTTATGTACCAAGATGTTCTTTTAAAATTTTCTATCTCT-TGCTGATAAGCTACT-ATGGGC
gi|40 : TCTA-AACACTTTC-TT-GAA-ATATT--TCGA-C-TGCGT-TAC-CG----G-TCTT----ttatttggaaagcattttttgacagcggtcgagtttcaagaatttttatttgtcgattttgttaaaattttcattgaatattgggaaagtcctttagaatagtttactacaaggggaacacgattattttaccgctttctctttttctgtagtta
gi|5 : acTCTA-AACACTTTC-TT-GAA-ATATT--TCGA-C-CGCGT--AC-CG----G-TCTT----CATAAGT-C-G-T---GTTT-A-TT--T---TCCG-TAGC-AAAAC-ACAACACGCACATA--CTA-C-ACAACACT-TAG--AGTAA-------C--TAAGTG-AACG-TCAC--AG--T-GGA-TT-TTA-AG-TTTGAACCAA--TAA----CG-TCA-CAA-TTGAAA-TT-ACGCG--CAAAA-CA--TTT---G-AAAA---TAG-T-AAG--AGTC------ATTGAATTAACAA---T---GC-----TAAGTTAGCCGC-GTCGGC--AT------------AT-A-GCG--T-GAATGA---A-ATA--TATA---AGTAAT----GGTACCAAAATA-TAGGGAAATT-ACGAACAC--ATA-GCAGTTGAACTACTGAGACCTATGTGAATTACAA----AC-ATG--------AAA--------ATATACAAAT-TAGTAATT---AAAGTTA--TACA-TGTA-CA----------TATAACATAATTA-ACAAT-ATAA-A-AAGAGTTA--T--------------AACAAT-----------TCTATTTCTA-----GCTATGT-TTACA-TGTT--AAGA--CG----CATTTTTTAAA--GACAGAAATGTT-CCCGGTTGTTTAATTTCCGACAT-G-GTGGCGTAAGTG-TTCAA-TTTTTTCTTTC--CATA-G-T--TTCTCT-AAATCGACGATAAAAGATC--C-ATCTTTG-TACAGC-TTTT-CATCCC-T--ATTATAGTAAATAATCACT
gi|6 : aaagtctctttatcggagtaaaattaaaaaaaaaacCGC-TAC-CG----G-TCTT----CATCAGT-C-G-T---GTTT-A-TT--T---TTCT-TAGC-AA--C-A----------G-A----------A-CA-T-TAG--AGTA--------C--T--ATG-A-CG-TCAC--AG--T-GGA-TA-aag
gi|6 : tcttgagtatgtccggcgtacatcgtt--------ATATAC-CAA-TATTAACT---AA--TTG--TACA-TGTA-CA----------T---ACATAATTATACAAT-ATAA-A-AAGAGTTA--T-------A----C-AACAAT-----------T---TT-CTATA--TTCTCTGT-TTACA-TGTT--AAGA--CG----CA-TTTTTAAA--GACAGAAATGTT-CCCGTTTGTTTA--TTCCGA-AT-G-GT-GCGTAAGTG-TTCAT-TTTTTTTTCTT--CATAGGTT--TTCTCT-AAATCGATGATAAACG--T--C-TTCTTTG-TAAAAC-Tnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncatataccaatattaactaattgtacatgtacatacataattatacaatataaaaagagttatacaacaattttctatattctctgtttacatgttaagacgcatttttaaagacagaaatgttcccgtttgtttattccgaatggtgcgtaagtgttcatttttttttcttcataggttttctctaaatcgatgataaacgtcttctttgtaaaact
gi|7 : tcttgagtatgtccggcgtacatcgttcgctaccggtcttcatcagtcgtgtttatttttcttagcaacagaacattagagtactatgacgtcacagtggatannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncTCTA-AACACTTTC-TT-GAA-ATATT--TCGA-C-CGCGT-TAC-CG----G-TCTT----CATCAGT-C-G-T---GTTT-ATTT--T---TCCG-TAGC-AA--C-ACA----------A--CTA-CAACA-CA-T-TAG--AGTA--------C--T--ATG-A-CG-TCAC--AG--TGGGA-TA-TTA-AGTTT-GAAC-AA--TAA----CG-TCA-CAGTTTGAAATTT-ATGCG--CCAAA-CATGTTT---GAAAAA---TAG-TAAAG--AGTCTT----ATGAAATTAACAA---T--AGC-----TAAGTTAGCCGC-GTCGGC--AT------------ATAA-G-G--TAGAATGA---A-ATA--TATA---AGT-AT----GGTA-CAAAATATTAGGGAAA-T-ACGAACAC--ATA-GCAGTT-GACTACT--GACCTATGT------GAATTACAACATG---------AA--------ATATAC-CAT-TAGTAATT----AA-TTA--TACA-TGTA-CA----------T---ACATAATTATACAAT-ATAA-A-AAGAGTTA--T-------A----CAAACAA------------T---TTTCTACA--TTCTATGT-TTACATTGTT--AAGA--CG----CA-TTTTTAAA--GACAGAAATG
gi|8 : ataatacaaaagtctctcatcggagtaaaatttaaaaaaaaaaaaaacaaac--GACAGAAGTGTT-CC-GCTTGTTAT--TTCCGA-AT-G-GTG-CGTAAGTG-TTCAA-TTGTTTC-TTC--CATAGGTT--TTCTCT-AAATCGACGATAAATG--T--C-ATCTTTG-TAAAGC--TTTCCATCCC-T--ATTATAG--AA-AATCACTTAT-A-TTGTGAGAGTCCGTGC--A-AA-A-ATG-AATA--CTA-CCAGGTCGTC-AGTT-TTCCTTCTAATAACTGAC-AAATT-TAACACATGCCTCTGAT-A---TAAAGTAGCACAGG-TTTTCC-CCACA-T-A-TACGA-------T-T--TTA--TTGCA---TTTTTAGC-AGAACA-CT-CCATA-AAC-TACG--TTACTG-GA--TACA-A-TT-A-A-TG-TA-A-TTTTTA--ATATGA-T-A--TT-TGT-GTCT-T-TTACA-ATCTTT-C-GAAT--TG--GTTA----GT-TTT-TATGA-CATA-TTGACATAAAATGC---ACTTTTTAG-C----ACC-ACA--T-GGC--TCGC
gi|9 : -GAA-ATATT--TCGA-C-CGCGT-TAC-CG----G-TCTT----CATCAGT-C-G-T---GTTT-A-TT--T---TCCG-TAGC-AA--C-ACAAC--GTACA-A--CTA-C-ACA-CA-T-TAG--AGTA--------C--T--ATG-A-CG-TCAC--AG--T-GGA-TA-TTA-AG-TT-GAAC-AA--TAA----CG-TCA-CAC-TTGAAA-TT-ACGCG--CAAAA-CA--TTT---G-AAAA---TAG-T-AAG--AGTC-T----AT-AAATTAACAA---T--AGC-----TAAGTTAGCCGT-GTCCGCGTATCTTCAAGGATGAATAA-GCG--TAGACTGA---A-ATA--TGTA---AGTAAT----GGTA-CAAAATA-TAGGGAAATT-ACGAACAC--ATA-GCAGTT-GATTACT--GACCTcttt
5 sequences could not be aligned to this reference sequence:
Unaligned ( gi|17 ): TTTTTTTATTGAATAAATTCTTTTATATGTACCAAAATGCCTCTCTTCCGAAATGCTACATGTAATATGGGCGTATTTCTAAAAGCCTTCTTGGAGTGGTCAAAGTTCTCAAATTTTTTTTTTTTTTGAATATTGGAAAGTCCATTGGAAAGTCCTTTATATCAGAAAAGGAACGCGATTACACCGTTTCGTCTTTTTACTGTAGTT
Unaligned ( gi|20 ): TCTTTTATAGTTACCAAAATGCCTCTTCTTCCGAAATGCTACATGTTAATATGGGCGTATTTTTAAAAGCCTTCTTGGACGTGGTCAAAGTTCTCAAAATTTTTTTTTTTGAATATTGGAAAGTCCATTGGAAAGTCCTTTATATCAGAAAAGGAACGCGATTACACCGTTTCGTCTTTTTACTCGTAGTTACA
Unaligned ( gi|33 ): AGACGTAATCTGAACCACTATACTAATTTAAAATTTATGTGGCATTTAAGAGTGGTTTATATTNATGATT
Unaligned ( gi|34 ): ATATATTACAAAGTCTCTTTCATCGGCAAGTTAAAATTAAAAAAAAATAACTCTAAACACTTTCTT
Unaligned ( gi|36 ): ATATATAAAGTCTCTTTCATAGGAGTAAAATTAAAAAACTCTGAACACTTTATT
Alignments
lowQualScore : 1111 11111111111 111 111111 11111 888888888888888888888888888 111 11111 1111 333333333333 1111111 2222222222222222222 111 11 22222222222222 222222222222 22222222222 1111 22 1 1 1 11 44444444444444444444 111 11111 1111 1 111111 1 222222 1111 1111 1111 22222 11 1
lowQualScore : 2 2 2 2 33 4 2 2 2 4444 2 1111 2 2 2 444 2 2 33 666 2 2 66 2 444 555 33 5 2 2 2 5 33 33333333333 33 5 2 2 33 44 3 3 3 4 4 4 4 66 9999 4 4 4 4 4 66 4 66 777 4 222 4 4 66 555555 5 999999 22222 5 999999999999999999999999999 5 77 1 777 666 77 44444 4444 5 5 3 5 5 4 3 99 000000000000 0000000 9999999999999999999 4 4 4 000 77 77 5 5 66666666666666 5 5 66 444444444444 5 88888888888 888 8 66 9999 22 1 5 66 66 0000 4 1 55 4 55 4 4 4 00 4 4 9 55 666 0 5 55555 4 4 4 3 9999 66 6 77 66 4 4 4 4 4 4 4 4 6 9 5 99999 4 2 4 4 1 4 66 4 66 4 4 22222222222222222222 333 66666 2 4 2 8 66 777 777 1 44444 2 5 5 5 5 5 9999 5 0 66 0 5 66 5 5 2 5 5 5 5 5 5 66 66 444444 5 5 5 0 5 000000 3 5 0000 5 1111 66 1 2 77 2222 5 66 66666 6 1 3 6 3 2 1 66 6 6 6 7 0
lowQualScore : . . . . .. . . . . .... . .... . . . ... . . .. ... . . .. . ... ... .. . . . . . .. ........... .. . . . .. .. . . . . . . . .. .... . . . . . .. . .. ... . ... . . .. ...... . ...... ..... . ........................... . .. . ... ... .. ..... .... . . . . . . . .. ............ ....... ................... . . . ... .. .. . . .............. . . .. ............ . ........... ... . .. .... .. . . .. .. .... . . .. . .. . . . .. . . . .. ... . . ..... . . . . .... .. . .. .. . . . . . . . . . . . ..... . . . . . . .. . .. . . .................... ... ..... . . . . .. ... ... . ..... . . . . . . .... . . .. . . .. . . . . . . . . . .. .. ...... . . . . . ...... . . .... . .... .. . . .. .... . .. ..... . . . . . . . .. . . . . .
lowQualScore : 9 5 4 2 11 4 2 1 1 5555 1 1111 5 5 5 444 5 5 77 999 7 7 88 9 555 111 99 7 9 9 9 7 99 99999999999 77 7 9 9 99 66 6 6 6 0 0 0 4 11 4444 4 4 4 4 4 11 4 11 888 4 222 4 4 11 222222 1 999999 55555 7 333333333333333333333333333 7 99 7 444 111 99 33333 2222 7 0 1 0 0 0 2 55 222222222222 7777777 4444444444444444444 3 4 4 000 77 99 7 7 00000000000000 7 7 99 000000000000 0 88888888888 888 4 99 0000 44 4 0 99 99 6666 4 0 00 0 55 0 0 4 11 4 0 8 55 333 8 5 99999 0 0 0 3 3333 11 5 77 11 4 4 4 4 4 4 4 4 2 5 0 66666 4 9 4 4 9 4 11 4 11 4 4 99999999999999999999 777 44444 0 4 9 0 11 222 666 1 99999 5 0 0 0 0 0 0000 0 4 99 0 0 99 0 0 5 0 0 0 0 0 0 99 99 666666 0 0 0 4 9 555555 2 0 6666 0 9999 99 3 3 11 1111 7 00 44444 7 0 7 7 5 5 0 88 7 7 7 3 0
consensus : TCTA-AACACTTTC-TT-GAA-ATATT--TCGA-C-CGCGT-TAC-CG----G-TCTT----CATCAGT-C-G-T---GTTT-A-TT--T---TCCG-TAGC-AA--C-ACAAC--GCACG-A--CTA-C-ACA-CA-T-TAG--AGTA--------C--T--GTG-A-CG-TCAC--AG--T-GGA-TA-TTA-AG-TT-GAAC-AA--TAA----CG-TCA-CAG-TTGAAA-TT-ACGCG--CAAAA-CA--TTT---G-AAAA---TAG-T-AAG--AGTC-T----ATGAAATTAACAA---T--AGC-----TAAGTTAGCCGC-GTCGGC------------AT-----------G-ATAA-GCG--TAGAATGAAA-A-ATA--T-----GTAAGTAAT----GGTA-CAAAATA-TAGGGAAATT-ACGAACACAT-AGCAGTTG-ACTACT--GACCTAC-GT------CAA----AA-ATGCTTTCC--AAA--------ATATGC-CAT-TAGTAATT---AAA-TTA--TACA-TGTA-CA----------T---ACATAATTATACAAT-ATAAA-AAGAGTTA--T-------A----C-AACAAT-----------T---TTTC--TA--TATTCTCTGTTTACA-TGTT--AAGA--CG----CA-TTTTTAAA--GACAGAAATGTT-CCCGTTTGTTTA--TTCCGA-AT-G-GT-GCGTAAGTG-TTCAA-TTTTTTC-TTC--CATAGGT-TTTCTCTAAAATCGACGATAAATG--T--C-ATCTTTG-TAAAGC-TTTTCCAT-CC-T--ATTATAG--AATAATCACTTATAA-TTGTGAGAGTCCGTGC--A-AA-A-ATGAA-TAG-CTA-CCGGGTCGTC-AGTC-TTCCTTCTAATAAGTGACAAAATT-TAACACATGCCTCTGAT----A-TAAAGTAGCACCA-G-TTTCTC-CCACA--T-A--T-ACG-A-----ATTT-----------TTATTTTGCA--TTTTTTTGC-AGAACA-CT--CCATAAA-C-TACG--TTACTG-GATTTACA-A-TT-A-A-TG-T--A-TTTTTA--ATATGA-T-AT--T-TGT-TGCC-GTT-ACA-ATC-CT-CG-AAT--TGG--TTAG----T-TTT-TATGAC-ATA-TTGACATAANATGCCA-ACTTTTTA-GC----A-CCACA--C-GGC--TCGCACAAG-TTT----TCT-TTTCTTTAAAAAA-----TAGA-TTATTATGTTTCTTATGTACCAAGATGTT-TTTTAAATTTGTNTGATTCT-T-CTGAAAAGCTACT-ATGGGCA
Reference ( family-737 ) : TCTA-AACACTTTC-TT-GAA-ATATT--TCGA-C-CGCGT-TAC-CG----G-TCTT----CATCAGT-C-G-T---GTTT-A-TT--T---TCCG-TAGC-AA--C-ACAAC--GCACG-A--CTA-C-ACA-CA-T-TAG--AGTA--------C--T--GTG-A-CG-TCAC--AG--T-GGA-TA-TTA-AG-TT-GAAC-AA--TAA----CG-TCA-CAG-TTGAAA-TT-ACGCG--CAAAA-CA--TTT---G-AAAA---TAG-T-AAG--AGTC-T----ATGAAATTAACAA---T--AGC-----TAAGTTAGCCGC-GTCGGC------------AT-----------G-ATAA-GCG--TAGAATGAAA-A-ATA--T-----GTAAGTAAT----GGTA-CAAAATA-TAGGGAAATT-ACGAACACAT-AGCAGTTG-ACTACT--GACCTGC-GT------CAA----AA-ATGCTTTCC--AAA--------ATATAC-CAT-TAGTAATT---AAA-TTA--TACA-TGTA-CA----------T---ACATAATTATACAAT-ATAAA-AAGAGTTA--T-------A----C-AACAAT-----------T---TTTC--TA--TATNCTCTGTTTACA-TGTT--AAGA--CG----CA-TTTTTAAA--GACAGAAATGTT-CCCGTTTGTTTA--TTCCGA-AT-G-GTNGCGTAAGTG-TTCAA-TTTTTTCCTTC--CATAGGT-TTTCTCTAAAATCGACGATAAATG--T--C-ATCTTTG-TAAAGC-TTTTCCAT-CC-T--ATTATAG--AATAATCACTTATAA-TTGTGAGAGTCCGTGC--A-AA-A-ATGAA-TAG-CTA-CCGGGTCGTC-AGTC-TTCCTTCTAATAAGTGACAAAATT-TAACACATGCCTCTGAT----A-TAAAGTAGCACCA-G-TTTCTC-CCACA--T-A--T-ACG-A-----ATTT-----------TTATTTTGCA--TTTTTTTGC-AGAACA-CT--CCATAAA-C-TACA--TTACTG-GATTTACA-A-TT-A-A-TG-T--A-TTTTTA--ATATGA-T-AT--T-TGT-TGCC-GTT-ACA-ATC-CT-CG-AAT--TGG--TTAG----T-TTT-TATGAC-ATA-TTGACATAANATGCCA-ACTTTTTA-GC----A-CCACA--C-GGC--TCGCACAAG-TTT----TCT-TTTCTTTAAAAAA-----TAGA-TTATTATGTTTCTTATGTACCAAGATGTT-TTTTAAATTTGTNTGATTCT-T-CTGAAAAGCTACT-ATGGGCA
gi|1 : TCTATAACACTTTC-TT-GAAGATATT--TCGA-CACGCGT-TACTCT----G-TCTT----CATCAGT-C-G-T---GTTTTA-TT--T---TCCG--AGC-AA--CCACAAC--GCACA-AAACTA-C-ACA-AT-T-TAG--AGTA--------C--T--ATGGA-CGGTCAC--AG--T-GGAGTA-T-A-AG-TT-GAAC-AA--TAA----CG-TAAACAG-TTGAAA-T--ACGCG--CAAAAACA--TGT---G-AAAAA--TAG-T-AAG--AGTC-T----ATGAA-TTAACTA---A--AGC-----TATGTTAGCCGCCGTCGG--------------------------G-ATAAAGCGCTTAGAATGAAA-T-ACA--TACGTAGTAAGTAATTTGTAGCA-AAAAATA-TAGGGAAATTTACGAACACATCAGCAGTTG-ACTACT--AGCCTAT-G---------A----TA-ATA-TTTAC--AAACATGAACAGTATAC-CAT-TAGTAATT---AA--TTA--TACA-AGTA-CA----------T---ACATAATTATACAATTATAAA-AAGAGTTA--CTGGCAAAA----C-AATAATAATATAACACAT---ATAA--TA--TATA---TATTTACA-TGTT--AAGA--CG----CA-TGTT-AAA--GACAGAAATGTT-CC-GTT-GTTTA--T-CCGA-AT-GTGGTGCGTAAGTGATTCAA-TTTTTTC-TTC--CATAG---TTTCTCTAAA-TCGACGATAAATG--T--C-AC---TG-TTAAGC-TTTTCCAT-CC-CTAATTATAG--AATAATCACTTATA--TTGTGAGAGTCCGTGCCTATGA-A-ATGAAATAGACTA-CCGGGTCGTC-AGTCATTCCTTCTAATA-GTGACAAA-TT-AAACACATGCCTCTGAT----A-TAAAGTAGCAC-A-G-TTTCTC-CCACA--T-A--TTACG-A-------TT-----------TTATT--GC---TTTTTTTGC-AGGACA-CT--CCATAAAAC-TACA--TTACTG-GATTAACA-AGTTGA-A-TA-TTAA-TTTTTA--ATATGA-T-ATCTT-TGT-TGCC-GTTTACA-ATC-CTGCGGAAT--TGGAGTTAGATTGT-TTT-TATGACCATAGTTGACATA-TATGC---ACTTTTTA-GCCCAAA-CCACA--T-GGC--TCGCACAAG-TTT----TCT-TTT-TTTAAAAAA-----TAGA-TTATTATGTTTCTTATGTACAAGAATGTC-TTTTAAAT---TCTTATTCTCT-CTG-AAAGCTACTGATGG
gi|1 : aaagtctctttcatcggagtaaaatttgaaacccacaaac-ACT-CT--GACC-GC-CT------CAA----AA-ATGCTTTCC--AAAC-------ATATGC-CAT-CAGTAcatatgtttggaaagcatttttgaggcggtcagagtttctcaagaattttttgtcgatttttaaaattttatgaatattggaagtcctttagaatagtttacgtacaagggaccgatt
gi|10 : aaagtctctttcatcggagtaaaatttgaaacccacaaactctataacactttcttgaagatatttcgacacgcgttactctgtcttcatcagtcgtgttttattttccgagcaaccacaacgcacaaaactacacaatttagagtactatggacggtcacagtggagtataagttgaacaataacgtaaacagttgaaatacgcgcaaaaacatgtgaaaaatagtaagagtctatgaattaactaaagctatgttagccgccgtcgggataaagcgcttagaatgaaatacatacgtagtaagtaatttgtagcaaaaaatatagggaaatttacgaacacatcagcagttgactactagcctatgataatatttacaaacatgaacagtataccattagtaattaattatacaagtacatacataattatacaattataaaaagagttactggcaaaacaataataatataacacatataatatatatatttacatgttaagacgcatgttaaagacagaaatgttccgttgtttatccgaatgtggtgcgtaagtgattcaattttttcttccatagtttctctaaatcgacgataaatgtcactgttaagcttttccatccctaattatagaataatcacttatattgtgagagtccgtgcctatgaaatgaaatagactaccgggtcgtcagtcattccttctaatagtgacaaattaaacacatgcctctgatataaagtagcacagtttctcccacatattacgattttattgctttttttgcaggacactccataaaactacattactggattaacaagttgaatattaatttttaatatgatatctttgttgccgtttacaatcctgcggaattggagttagattgtttttatgaccatagttgacatatatgcactttttagcccaaaccacatggctcgcacaagttttctttttttaaaaaatagattattatgtttcttatgtacaagaatgtcttttaaattcttattctctctgaaagcGAGAGTCTGAGT--A-CA-A-ATGAA-TTG-CTA-CCGGGTCACC-AATT-TTCCTTCTAATAAGTG--------------------TC--------A-TCAAGTTGCCCCA-G-TT-----CCACACTT-A--T-GCA-ATTCATATTTAT---------TTATTTTGAA--TTTATT-AC-A-AACAATT--CCATAAA-A-TACG--TT---------TA-----TT-A-A-TA-T--AATTTTTG--ATATGA-T-AT--T-TGT-TGCC-GTC-ACA-ATC-CT-AG-AAT--TGG--TTAC----T-TTT-AATAAT-ATA-TTGACATAAAATGCAA-ATATT----GC----A-CCACA--C-AGC--TTGCCCAGG-TTT----TCT-TTTCTAAAAAAAAAAAC-CAGA-TTAGAATGTTTCTTGTGTACATAAATGTT-TTTTGATTTTGTGTGATT-T-T-TTGAAAttctcaagaattttttgtcgatttttaaaattttatgaatattggaagtcctttagaatagtttacgtacaagggaccgatt
gi|11 : ----A-TAAAGCC-CATCAAG-TT-----CCACA--T-A--T--CGCA-----ATTTCATATTATTATTTATTTTGAA--TTATT---C-A-AACA-ATTCCCATAAA----ATA--TCG------TTTA---A-TT-ATA-TA----A-TTTTTG--ATATGAAT-AT--T-TGT-TGCCGGTC-ACA-ATC-CT-AG-AAT--TGG--TTA-----C-TTT-TATAAT-ATA-TTGACATAAAATGCAA-ATATT----GC----A-CCACA--CAAGC--TTGCCCAGG--TT----TCT-TTTCTAAAAAAAAAAACCAAGA-TTAGAATGTTTCTTGTGTACTAA-ATGTT-TTTTGATTTTGTGTGATT-T-T-TTGAAA
gi|12 : A-TTTTCAAC--GGCAAATATGTT-CCCGTTTGTTTA--GTCCAA-AC-G-A-CACATA------------TTCTTCCT------TAGAT-TTTCTTTAAAA-CGACGATAAAT--------ATCTTTG-TCAAG--TTTTCCATACA-T--ATTATAG--AAAAATTGTTTATA-----CGAGAATCTGTGT--A-GA-A-ATGAA-TAG-CTA-CAACGTCATT-AGTC-TCTCTTCTTATAAGTGAC-AAATT-CAACGCGTGCCTTTGAT----A-cctgagaactgtaaattttttggaa
gi|13 : cagtagttaattgtatatacatcaatactaacatggtaaaatcagtttatacaatttgaaaaaaaacacacatgcagaactttTCTA-AACACTTTC-TTTGAA-ATATT--TCGACC-CGCG--TAC-CG----G-TCTT----CATCAGT-C-GTT---GTTT-A-TT--TTTATCCG-TAGCAAA--C-AC-AC--CCACA-A--CT--C-ACA-CA-T-TAGTAAGTA--------CTTT--ATG-A-CG-TCACAAAG--T-GGA-TATTTA-AG--T-GAAC-AAATTAATTACCGTTCA-CAG-TTGAAA-TTAACGCGGACAAAA-CA--TTTAGGA-AAAA---TAG-T-AAAGTAGTC-G----ATG-AATTAACAAAGCT--AGCCTAATTAAGTTAGCCGC-GGCG
gi|14 : taaaattttttaaaaaaaaaaaaataaaaaaaaccgtctaccacTA-GACACTTTC-TT-GAA-GTATT--TTGA-C-TTTGG-TAT-CG----T-TCTT----CCTCAGT-C-A-T---GTTT-A-TT--T---T-----------------AAA--GCAAG-A--CTA-C-ATA-CA-T-AAG--ATTACTGACTAGC--T--GTG-A-CA-TCAC--AA--T-GGG-TA-TTACAT-TT-GATC-AG--TAA----CA-TCA-CAG-TTGAAA-TT-ACATG--CAAAA-CA--ATT---G-AAAAAGGTAATT-AAG--AGTC-TCATAATGAAATTAACAA---T--GGC-----T
gi|15 : gacaaattctttaatttgaaatatatgtatttacaaatgtacatataTAATT---AA--TTAAGTACACTGTA-C-----------T---ACATAAT-ATACAAT-ATAAA-AATAGTTA--T-------A----C-AACA-T-----------T---TTCC--TA--T-TTCTCTGTTTACA-TGTT--AAGA--CG----CA-TTTTTAAAGGGACAAAAAATTT-CCCGTTTGTTTA--TTCCGA-AT-G-GT-GTGTAAGTG-TTCAA-TTTTT--CTTCCTCATAGGTACTTCTCTAAAATCGACGATAAATG--TTCC-ATCTTTGTTAAAGC-TTTTCCAC-CC-T--ATTATAG--GA
gi|16 : GAGAGTCCGTGC--A-AA-A-ATGAA-TAG-CTA-CCAGGTCGTC-AGTT-TTCCTTCTAATAAa
gi|16 : AACAACT--CCATA---C-TACG--TTACTG-AAT--ACATA-TT-A-A-TG-T--A-ATTT-A--ATATGA-T--T--T-TGTGTTCT-TTT-ACACACT-TT-CG-AAT--TGG--TTAG----T-TTT-TATG-C-ATA-TTGAC-TAA-ATGGCACGTTTTTTAGGC----ACCCACA--T-GGC--TCGCCTA----TT----TCT-GTAGTTTAGGAGA-----Tcaactccatactacgttactgaatacatattaatgtaatttaatatgattttgtgttcttttacacactttcgaattggttagtttttatgcatattgactaaatggcacgttttttaggcacccacatggctcgcctatttctgtagtttaggagat
gi|18 : gagagtccgtgcaaaaatgaatagctaccaggtcgtcagttttccttctaatTA-AACACTTTCCTT-GAA-A-ATT--TCGAAC-CGCGT-TAC-CG----GGTCTT----CATCAGT-C-G-T---GTTT---TT--T---TCCGCTAGC-AAA-C-ACAAC--GCAC--A--CTA-C-ACA-CA-T-TAG--AGTA-----------T--ATGCA-CG-TCAC--AGGGT-GGA-TA-TTA-AG-TT-GAAC-AA--TAA----CG-TCA-CTG-TTG-AA-TT-ACGTG---GAAA-CA--TTT---G-AAAA---TAG-T--AG--AATC-
gi|19 : actct--GACAGAAGTGTT-CCCGCTTGTTTA--TTCCGA-AT-G-GT-GCGTAAGTG-TTCAA-TTGTTTC-TTC--CATAGGT-TTTCTCTAAA-TCGACGATAAATG--T--C-ATCTTTG-TAAAGC-TTTTCCATCCC-T--ATTATAG--AATAATCACTTAT-A-TTGTGAGAGTCCGTGC--A-AA-A-ATGAA-TAG-CTA-CCAGGTCGTC-AGTT-TTCCTTCTAATAAgacaatagt
gi|2 : TCTA-AACACTTTC-TT-GAA-ATATT--TCGA-C-CGCGT-TAC-CG----G-TCTT----CATCAGT-C-G-T---GTTT-A-TT--T---TCCG-TAGC-AA--C-ACAAC--GCACA-A--CTA-C-ACA-CA-T-TAG--AGTA--------C--T--ATG-A-CG-TCAC--AG--T-GGA-TA-TTA-AG-TT-GAAC-AA--TAA----CG-TCA-CAG-TTGAAA-TT-ACGCG--CAAAA-CA--TTT---G-AAAA---TAG-T-AAG--AGTC-T----ATG-AATTAACAA---T--AGC-----TATGTTAGCCGC-GTCGGC------------AT-------------ATAA-GCG--TAGAATGAAATACATACGT-----GTAAGTAAT----GGTA-CAAAATA-TAGGGAAATT-ACGAACACTG-ATTCG-TA-AC-ACT--GACC-GC-CT------CAA----AA-ATGCTTTCC--AAA--------ATAT-C-CATCTAGTAATT---AAA-TTA--TACA-TGTATCA----------T---ACAT-ATTAT----T-ACAGATAAGAGTTA--T-------A----C-AACAAT-----------T---TTTC--TA--GATATTCTAATTAAA-TGTT--AAGA--CG----CA-TTTTTAAA--GACAGAAATGTT-CCCGTTTGTTTT--ATGTGA-AT-T-ATTCCGTAAGTG--TCAATTTTTTTCTTTC--CATAGG--TTTCTCTAAAATCGACGATAAATG--T--CGATCTTTG-TACAGC-TTTTCC-T-CC-T--ATTATAG--AA-AATCACTTATAA-TTGTGAGAGTCCGTGC--A-AACACATGAA-TAG-CTATCCGGGTCGTCAAGTC-TTCCTTCTAATAAGTGACAAAATT-TAACACATGCTTCTGATGAGGG-TAAAGTAGCACCA-G-TTTCTC-CCACA--TAA--T-ACG-A-----ATTT-----------TTATTTTGCAATTTTTTTTGC-AGAACA-CT---CAT-AA-C-TACA--TTACTGCAATTTACA-A-TT-A-A-TG-T--A-TTTTAA--ATATGATT-AT--TGTGT-T-TC-GTT-ATA-ATC-CT-CG-AAT--TGG--TTAG----TATTTGTATGAC-ATA--TGACATAATATGTCG-ACTATTTA-GC----A-C--CA--C-GGC--TCGCACAAGTTTT----TCTGTTTCTTTAAAAAA-----TAGA-TTCTTGTGTTCCTTATGTGCCAAGATGTT-CTTTAAA-TTGTAC--TTCT-T-CTGAAAAGCTACT-ATGGGCA
gi|21 : -CAAGACA-GAGGGGAAGT-ATGAACACAC-AGCAGTTG-ACTCCT--GACCTAT-GT------
gi|22 : --T--GTG-A-TG-TCAC--AA--T-GAA-TA-TTA-AC-TT-TATC-AG--TAA----CA-CCA-TAG-TTGAAA-TT-ACGTG--CAAGG-CA--TTT---G-TAAA---AAG-T-AAG--AATC-T----ATGAAATTAACAA---TACAGC-----TTACCTACCCCC-CTCGACAA----------ATCCCCAAGAAGGA-ATAA-GCG--TAGAAT--AA-A-ATA--T-----ATAAGTAAgtgacggtcatgatgaacggtgatgtgcgaagaaacagtgataaattaacctaatcacctaacatagagtggtagacgtaatttgaaccattatgataattataatattgatgtggcatttaa
gi|23 : A-AACACTTTT-CT-GAA-ATATTTCTCGA-C-C-CGTATAC-CGGGTCG-TTGT----CATCAGT-CAG-TTTGATTT-A-TTAAT---CCCG-TAGC-GA----ACAA---ACA-G-A--CGG-A-ACA-AA-T-TAT--A-TA--------C--T--
gi|24 : aaactcTA-AACACT--------GA-ATATT--TTGA-C-CACAT-TAC-CA----G-CCCTA---CCTTAGTCC-G-T---GTTT-A-TT--TA--TAC--TAGC-Aaaacacatcaattatgtagttttgactatgaaacgtca
gi|25 : atattataatttatgaaaaagtctcttatatccaagaaaaatgtaaaaagctctaaagctaTA-AACACTTTC-TT-AAA-ATATT--TCAA-C-CG--------------G-TCTT----CATCAGT-T-G-T---GTTT-A-TT--T---TCCG-TAGC-AA--A-ACAAC--GCACG-G--TTA-C-ATA-CA-T-AAG--AGTA--------C--T--GTG-A-CA-TCAC--AA--T-GGA-AA-GTA-AG-TT-tatcataaatgcaat
gi|26 : taaaaactgggaacctgTCCTAATAAGTGACAAAATTCTAACACATGCCTCTGA-----A-TAAAGTAGCACCA-GTTTTCTC-CCACA--T-A--T-AC--A-----ATTT-----------TTA--TTGCA-----TTTTGCAAGAACA-CT--CCATAAA-C-TAC---TTAATG-atgca
gi|27 : TTA--T-------AATTGC-AACAATA----------T---TTTCAATAAATATTATTTGTT-ACA-TGTTTTAAGAATCGATATTA-TTTTAAAA--GACAG-AATGTTCCCCGTTTGAT----TTTCGA-AT-taa
gi|28 : agagttaatTAC-GCG--TTGAATCAAA-A------T-----ATAAGTAAT----CTTA-CAAGATA-GAGGAAAAGT-ATGAACACAC-AGCAGTTG-ACT
gi|29 : tttttggataattattctttggtttaacgatTTC-TC-TAA-ATATT--TCAC-C-CATGT-TAC-CA----A-CCTTCCTGCATCAG----------GTTC-A--T--T---GCTA-TAGC-AA--C-AAACC--ACATG-A--CCAGC-ATA-CA-TCTTG--AA-A--------T--C--GTG-A-CA-TCAC--Attgaacca
gi|3 : ATA-TAGGGAAATT-ACGAACACAT-AGCAATTG-ACTACT--GACCTAT-GTGATTTACAA----AC-ATG---------AA--------ATATTA-CAT-TAGTAATTTTAAAA-TTG--TACA-TGTA-CAATGCAGTACAT---ACATAATTATACAAT-ATAAA-AATAGTTAAAT-------A----C-AACAAT-----------T---TT-C--TA--TATTCTCTGTTTACA-TGGT--AAGA--TG----CA-TTTTTAAG--GACAAAAATGTT-CCCGTTTGTTTA--TTCCGA-ATCG-GGTGTGTAAGTG-TTCAA-TTTTTTC-TTC--CATAGGT-TTTCTCTAAA-TTGACGATAAATG--T--C-TTCTTTG-TAAAGC-TTTTCCAT-CCTT--ATTATAT--AATAATCACTTA-AA-TTGTGAGAGTCCGTGC--A-AA-A-ATGAA-TAG-CTA-CCGGGTCGTC-AGTC-TTCCTTCTAATAAGTGAC-AAATT-TAACACATGCCTCTGAT----A-TAAAGTAGCACCA-G-TTTCTC-CCACA--T-A--T-ACA-A-------TT-----------TTA--TTGCA---TTTTTTGC-AGAACA-CT--CCATAAA-C-TACA--TTACTG-GATTTGCA-A-TT-A-A-TGTT--G-TTTTTAATATATGA-T-AT--T-TGT-TGCC-GTT-ACA-ATC-CT-CG-AAT--TGG--TTAG----T-TTT-TATGAC-ATATTTGACATAATATG-CA---TTTTTA-GC----A-CCACA--T-GGC--TCGCACAAG-TTT----TCT-TT--TTTAAAAAA-----TAGA-TTATTATGTTTCTTATGTACCAAGATGCT-TTTAAAATTCTTAT--CTCT-T-CTG-AAAGCTACT-ATGGGCA
gi|3 : -ACT-CT--GACC-GC-CT------CAA----AA-ATGCTTTCCAAAAA--------ATATGC-CCA-TAGTAtattttttggaaagcatttttgaggcggtcagagttctcaagaattttttgtcgattttttaaaaattttatgaattttggaaagtcctttagaatagttt
gi|30 : atatagggaaattacgaacacatagcaattgactactgacctatgtgatttacaaacatgaaatattacattagtaattttaaaattgtacatgtacaatgcagtacatacataattatacaatataaaaatagttaaatacaacaattttctatattctctgtttacatggtaagatgcatttttaaggacaaaaatgttcccgtttgtttattccgaatcgggtgtgtaagtgttcaattttttcttccataggttttctctaaattgacgataaatgtcttctttgtaaagcttttccatccttattatataataatcacttaaattgtgagagtccgtgcaaaaatgaatagctaccgggtcgtcagtcttccttctaataagtgacaaatttaacacatgcctctgatataaagtagcaccagtttctcccacatatacaattttattgcattttttgcagaacactccataaactacattactggatttgcaattaatgttgtttttaatatatgatatttgttgccgttacaatcctcgaattggttagtttttatgacatatttgacataatatgcatttttagcaccacatggctcgcacaagttttcttttttaaaaaatagattattatgtttcttatgtaccaagatgcttttaaaattcttatctcttctgaaagcTTC-TC-TAA-ATATT--TCAC-C-CATGT-TAC-CA----A-CCTTCCTGCATCAG----------GTTC-A--T--T---GCTA-TAGC-AA--C-AAACC--ACATG-A--CCAGC-ATA-CA-TCTTG--AA-A--------T--C--GTG-A-CA-TCAC--Atctcaagaattttttgtcgattttttaaaaattttatgaattttggaaagtcctttagaatagttt
gi|31 : TCTA-AACACTCTC-TT-GAA-ATATT--TCGA-C-CGTAT-TAC-CA----G-TTTT----CCTCAGT-C-G-T---GTTT-A-TT--T---TC
gi|32 : cagtcttttttatcggagtaaaatttaaaaaaaacaacAA-ATATT--T--A-C-CGCAT-TAC-CA----G-TTTT----CCTCAAT-C-G-T---GTTT-A-T
gi|35 : aaaaaaccaaaacctctagattagactaaaatactgaAAAGTCACATCA-C-ATTTTC-CCACA--T-AAAT-ACG-A-------TT-----------CTATT--G-A--TTTTTTTGC-AAAACA-
gi|37 : ---TCTG-TAGC-AA--C-ACGAC--TCACG-A--CCA-C-ATA-C--C-TAG--AGTA--------T--T--GTG-A-CG-TCAC--AG--
gi|38 : CCA-AACACTTTC-TT-GAA-CTATG--TTGA-C-CGCAT-TTC-CG----G-TGTT----gg
gi|39 : aacgTCTA-AACACTTTC-TT-GAA--TATT--TCGA-C-CGCGT-TAC-CG----G-TCCT----
gi|4 : cccTCAA-TTTTTTC-TTC--CATAGGT-TT-CTCTAAA-TCGACGATAAATG--T--C-ATCTTTG-TACAGCATGTTACCT-CC-C---TTATAG--AATAAT-ACTTATAATTTGTGAGAGTCCGTGC--A-AA-A-ATGAA-TAG-CTA-CCGGGTCGTC-AGTC-TTCCTTCTAATAAGTGACAAATTT-TAACACATGCCTCT-AT----ATTAAAGTA-CACCA-G--TTCTCTCCACA--T-A--T-ACG-A-------TT-----------TTA-TTTGC---TTTTTTTGC-AGAAAA-CT--CCATTAA-CTTACACTTTACTG-GATTTACA-A-TT-A-ATTG-TA-A-TTTTTA--AT-TGA-TAAT--T-TGT-TGCC-GTT-ACA-ATC-CT-C--AATGGTGG--TTAG------TTT-TATAAC-ATATTTGACTTAAT-TAGCA-TTTTTTTA-GC----A-CCACATTT-GGCTTTCGCACAAG-TTTTTTCTTT-TTTCTTT-AAAAA-----TAGATTTATTGTGTTTCTTATGTACCAAGATGTTCTTTTAAAATTTTCTATCTCT-TGCTGATAAGCTACT-ATGGGC
gi|4 : ACTC-GACC-GCTGT------CAA----AAAATGCTTTCC---AA--------ATAAGC-CCA-TAGTAttatttggaaagcattttttgacagcggtcgagtttcaagaatttttatttgtcgattttgttaaaattttcattgaatattgggaaagtcctttagaatagtttactacaaggggaacacgattattttaccgctttctctttttctgtagtta
gi|40 : tcaattttttcttccataggtttctctaaatcgacgataaatgtcatctttgtacagcatgttacctcccttatagaataatacttataatttgtgagagtccgtgcaaaaatgaatagctaccgggtcgtcagtcttccttctaataagtgacaaattttaacacatgcctctatattaaagtacaccagttctctccacatatacgattttatttgctttttttgcagaaaactccattaacttacactttactggatttacaattaattgtaatttttaattgataatttgttgccgttacaatcctcaatggtggttagttttataacatatttgacttaattagcatttttttagcaccacatttggctttcgcacaagttttttcttttttctttaaaaatagatttattgtgtttcttatgtaccaagatgttcttttaaaattttctatctcttgctgataagcTCTA-AACACTTTC-TT-GAA-ATATT--TCGA-C-TGCGT-TAC-CG----G-TCTT----ttcaagaatttttatttgtcgattttgttaaaattttcattgaatattgggaaagtcctttagaatagtttactacaaggggaacacgattattttaccgctttctctttttctgtagtta
gi|5 : acTCTA-AACACTTTC-TT-GAA-ATATT--TCGA-C-CGCGT--AC-CG----G-TCTT----CATAAGT-C-G-T---GTTT-A-TT--T---TCCG-TAGC-AAAAC-ACAACACGCACATA--CTA-C-ACAACACT-TAG--AGTAA-------C--TAAGTG-AACG-TCAC--AG--T-GGA-TT-TTA-AG-TTTGAACCAA--TAA----CG-TCA-CAA-TTGAAA-TT-ACGCG--CAAAA-CA--TTT---G-AAAA---TAG-T-AAG--AGTC------ATTGAATTAACAA---T---GC-----TAAGTTAGCCGC-GTCGGC------------AT-------------AT-A-GCG--T-GAATG--A-A-ATA--T-----ATAAGTAAT----GGTACCAAAATA-TAGGGAAATT-ACGAACACAT-AGCAGTTGAACTACTGAGACCTAT-GTGAATTACAA----AC-ATG--------AAA--------ATATACAAAT-TAGTAATT---AAAGTTA--TACA-TGTA-CA----------TATAACATAATTA-ACAAT-ATAAA-AAGAGTTA--T--------------AACAAT-----------TCTATTTC--TA-----GCTATGTTTACA-TGTT--AAGA--CG----CATTTTTTAAA--GACAGAAATGTT-CCCGGTTGTTTAATTTCCGACAT-G-GTGGCGTAAGTG-TTCAA-TTTTTTCTTTC--CATAG---TTTCTCT-AAATCGACGATAAAAGATC--C-ATCTTTG-TACAGC-TTTT-CATCCC-T--ATTATAGTAAATAATCACT
gi|6 : aaagtctctttatcggagtaaaattaaaaaaaaaacCGC-TAC-CG----G-TCTT----CATCAGT-C-G-T---GTTT-A-TT--T---TTCT-TAGC-AA--C-A----------G-A----------A-CA-T-TAG--AGTA--------C--T--ATG-A-CG-TCAC--AG--T-GGA-TA-aag
gi|6 : tcttgagtatgtccggcgtacatcgtt--------ATATAC-CAA-TATTAACT---AA--TTG--TACA-TGTA-CA----------T---ACATAATTATACAAT-ATAAA-AAGAGTTA--T-------A----C-AACAAT-----------T---TT-C--TA--TATTCTCTGTTTACA-TGTT--AAGA--CG----CA-TTTTTAAA--GACAGAAATGTT-CCCGTTTGTTTA--TTCCGA-AT-G-GT-GCGTAAGTG-TTCAT-TTTTTTTTCTT--CATAGGT-TTTCTCT-AAATCGATGATAAACG--T--C-TTCTTTG-TAAAAC-Tnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncatataccaatattaactaattgtacatgtacatacataattatacaatataaaaagagttatacaacaattttctatattctctgtttacatgttaagacgcatttttaaagacagaaatgttcccgtttgtttattccgaatggtgcgtaagtgttcatttttttttcttcataggttttctctaaatcgatgataaacgtcttctttgtaaaact
gi|7 : tcttgagtatgtccggcgtacatcgttcgctaccggtcttcatcagtcgtgtttatttttcttagcaacagaacattagagtactatgacgtcacagtggatannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncTCTA-AACACTTTC-TT-GAA-ATATT--TCGA-C-CGCGT-TAC-CG----G-TCTT----CATCAGT-C-G-T---GTTT-ATTT--T---TCCG-TAGC-AA--C-ACA----------A--CTA-CAACA-CA-T-TAG--AGTA--------C--T--ATG-A-CG-TCAC--AG--TGGGA-TA-TTA-AGTTT-GAAC-AA--TAA----CG-TCA-CAGTTTGAAATTT-ATGCG--CCAAA-CATGTTT---GAAAAA---TAG-TAAAG--AGTCTT----ATGAAATTAACAA---T--AGC-----TAAGTTAGCCGC-GTCGGC------------AT-------------ATAA-G-G--TAGAATG--A-A-ATA--T-----ATAAGT-AT----GGTA-CAAAATATTAGGGAAA-T-ACGAACACAT-AGCAGTTG-ACTACT--GACCTAT-GT------GAATTACAACATG---------AA--------ATATAC-CAT-TAGTAATT----AA-TTA--TACA-TGTA-CA----------T---ACATAATTATACAAT-ATAAA-AAGAGTTA--T-------A----CAAACAA------------T---TTTC--TA--CATTCTATGTTTACATTGTT--AAGA--CG----CA-TTTTTAAA--GACAGAAATG
gi|8 : ataatacaaaagtctctcatcggagtaaaatttaaaaaaaaaaaaaacaaac--GACAGAAGTGTT-CC-GCTTGTTAT--TTCCGA-AT-G-GT-GCGTAAGTG-TTCAA-TTGTTTC-TTC--CATAGGT-TTTCTCTAAA-TCGACGATAAATG--T--C-ATCTTTG-TAAAGC-TTT-CCAT-CCCT--ATTATAG--AA-AATCACTTATA--TTGTGAGAGTCCGTGC--A-AA-A-ATGAA-TA--CTA-CCAGGTCGTC-AGTT-TTCCTTCTAATAACTGACAAA-TT-TAACACATGCCTCTGAT----A-TAAAGTAGCACAG-G-TTTTCC-CCACA--T-A--T-ACG-A-------TT-----------TTA--TTGCA---TTTTTAGC-AGAACA-CT--CCATAAA-C-TACG--TTACTG-GA--TACA-A-TT-A-A-TG-TA-A-TTTTTA--ATATGA-T-AT--T-TGT-GTCT-TTT-ACA-ATCTTT-CG-AAT--TGG--TTAG----T-TTT-TATGAC-ATA-TTGACATAAAATGC---ACTTTTTA-GC----A-CCACA--T-GGC--TCGC
gi|9 : -GAA-ATATT--TCGA-C-CGCGT-TAC-CG----G-TCTT----CATCAGT-C-G-T---GTTT-A-TT--T---TCCG-TAGC-AA--C-ACAAC--GTACA-A--CTA-C-ACA-CA-T-TAG--AGTA--------C--T--ATG-A-CG-TCAC--AG--T-GGA-TA-TTA-AG-TT-GAAC-AA--TAA----CG-TCA-CAC-TTGAAA-TT-ACGCG--CAAAA-CA--TTT---G-AAAA---TAG-T-AAG--AGTC-T----AT-AAATTAACAA---T--AGC-----TAAGTTAGCCGT-GTCCGCGTATCTTCAAGGAT-----------GAATAA-GCG--TAGACTG--A-A-ATA--T-----GTAAGTAAT----GGTA-CAAAATA-TAGGGAAATT-ACGAACACAT-AGCAGTTG-ATTACT--GACCTAT-GT------GAA----cttt
5 sequences could not be aligned to this reference sequence:
Unaligned ( gi|17 ): TTTTTTTATTGAATAAATTCTTTTATATGTACCAAAATGCCTCTCTTCCGAAATGCTACATGTAATATGGGCGTATTTCTAAAAGCCTTCTTGGAGTGGTCAAAGTTCTCAAATTTTTTTTTTTTTTGAATATTGGAAAGTCCATTGGAAAGTCCTTTATATCAGAAAAGGAACGCGATTACACCGTTTCGTCTTTTTACTGTAGTT
Unaligned ( gi|20 ): TCTTTTATAGTTACCAAAATGCCTCTTCTTCCGAAATGCTACATGTTAATATGGGCGTATTTTTAAAAGCCTTCTTGGACGTGGTCAAAGTTCTCAAAATTTTTTTTTTTGAATATTGGAAAGTCCATTGGAAAGTCCTTTATATCAGAAAAGGAACGCGATTACACCGTTTCGTCTTTTTACTCGTAGTTACA
Unaligned ( gi|33 ): AGACGTAATCTGAACCACTATACTAATTTAAAATTTATGTGGCATTTAAGAGTGGTTTATATTNATGATT
Unaligned ( gi|34 ): ATATATTACAAAGTCTCTTTCATCGGCAAGTTAAAATTAAAAAAAAATAACTCTAAACACTTTCTT
Unaligned ( gi|36 ): ATATATAAAGTCTCTTTCATAGGAGTAAAATTAAAAAACTCTGAACACTTTATT
Alignments
lowQualScore : 1111 11111111111 111 111111 11111 888888888888888888888888888 111 11111 1111 22222222222 1111111 2222222222222222222 111 11 22222222222222 222222222222 11 111 111111111 1111 11 1 1 111 1 44444444444444444444 111 11111 11111 1111 1 111111 1 222222 1111 1111 1111 22222 11 1
lowQualScore : 2 2 2 2 33 4 2 2 2 4444 2 1111 2 2 2 444 2 2 33 666 2 2 66 2 444 555 33 5 2 2 2 5 33 33333333333 33 5 2 2 33 44 3 3 3 4 4 4 4 66 9999 4 4 4 4 4 66 4 66 777 4 222 4 4 66 555555 3 999999 22222 5 999999999999999999999999999 5 77 1 777 666 77 44444 4444 5 5 3 5 5 4 3 99 33333333333 0000000 9999999999999999999 5 4 4 000 77 77 5 5 66666666666666 5 5 66 444444444444 5 11 888 333 66 333333333 1 5 66 66 0000 4 1 55 4 55 4 4 55 66 4 4 55 4 11 666 5 0 55555 4 4 4 7 4 66 66 6 555 66 4 4 4 4 4 4 4 4 2 3 5 99999 4 2 4 4 1 4 66 4 66 4 4 22222222222222222222 333 66666 2 4 2 8 66 4 777 4 3 1 33333 5 5 5 5 5 9999 5 66 0 5 66 5 5 2 5 5 5 5 5 5 66 66 444444 5 5 5 0 5 000000 3 5 0000 5 1111 66 1 2 77 2222 5 66 66666 6 1 3 6 3 2 1 66 6 6 6 7 0
lowQualScore : . . . . .. . . . . .... . .... . . . ... . . .. ... . . .. . ... ... .. . . . . . .. ........... .. . . . .. .. . . . . . . . .. .... . . . . . .. . .. ... . ... . . .. ...... . ...... ..... . ........................... . .. . ... ... .. ..... .... . . . . . . . .. ........... ....... ................... . . . ... .. .. . . .............. . . .. ............ . .. ... ... .. ......... . . .. .. .... . . .. . .. . . .. .. . . .. . .. ... . . ..... . . . . . .. .. . ... .. . . . . . . . . . . . ..... . . . . . . .. . .. . . .................... ... ..... . . . . .. . ... . . . ..... . . . . . .... . .. . . .. . . . . . . . . . .. .. ...... . . . . . ...... . . .... . .... .. . . .. .... . .. ..... . . . . . . . .. . . . . .
lowQualScore : 9 5 4 2 11 4 2 1 1 5555 1 1111 5 5 5 444 5 5 77 999 7 7 88 9 555 111 99 7 9 9 9 7 99 99999999999 77 7 9 9 99 66 6 6 6 0 0 0 4 11 4444 4 4 4 4 4 11 4 11 888 4 222 4 4 11 222222 2 999999 55555 7 333333333333333333333333333 7 99 7 444 111 99 33333 2222 7 0 1 0 0 0 2 55 66666666666 7777777 4444444444444444444 4 4 4 000 77 99 7 7 00000000000000 7 7 99 000000000000 0 99 888 999 99 666666666 4 0 99 99 6666 4 0 00 0 55 0 0 55 11 4 4 55 0 00 333 7 6 99999 0 0 0 8 4 11 11 5 777 11 4 4 4 4 4 4 4 4 4 4 0 66666 4 9 4 4 9 4 11 4 11 4 4 99999999999999999999 777 44444 0 4 9 0 11 4 888 4 7 9 99999 0 0 0 0 0 0000 0 99 0 0 99 0 0 5 0 0 0 0 0 0 99 99 666666 0 0 0 4 9 555555 2 0 6666 0 9999 99 3 3 11 1111 7 00 44444 7 0 7 7 5 5 0 88 7 7 7 3 0
consensus : TCTA-AACACTTTC-TT-GAA-ATATT--TCGA-C-CGCGT-TAC-CG----G-TCTT----CATCAGT-C-G-T---GTTT-A-TT--T---TCCG-TAGC-AA--C-ACAAC--GCACG-A--CTA-C-ACA-CA-T-TAG--AGTA--------C--T--GTG-A-CG-TCAC--AG--T-GGA-TA-TTA-AG-TT-GAAC-AA--TAA----CG-TCA-CAG-TTGAAA-TT-ACGCG--CAAAA-CA--TTT---G-AAAA---TAG-T-AAG--AGTC-T----ATGAAATTAACAA---T--AGC-----TAAGTTAGCCGC-GTCGGC------------AT-----------G-ATAA-GCG--TAGAATGAAA-A-ATA--T-----GTAAGTAAT----GGTA-CAAAATA-TAGGGAAATT-ACGAACACAT-AGCAGTTG-ACTACT--GACCTACGT------CAA----AA-ATGCTTTCC--AAA--------ATATGC-CAT-TAGTAATT---AAA-TTA--TACA-TGTA-CA----------T---ACATAATTATACAAT-ATAAA-AAGAGTTA--T-------A----C-AACAAT--T---TT--TC--TA--TAT----TCTCTGTTTACA-TGTT--AAGA--CG----CA-TTTTTAAAG--ACAGAAATGTT-CCCGTTTGTTTA--TTCCGA-A-T--G--GT-GCGTAAGTG-TTCAATTTTTT--C-TTC--CATAGGT-TTTCTCTAAAATCGACGATAAATG--T--C-ATCTTTG-TAAAGC-TTTTCCAT-CC-T--ATTATAG--AATAATCACTTATAA-TTGTGAGAGTCCGTGC--A-AA-A-ATGAA-TAG-CTA-CCGGGTCGTC-AGTC-TTCCTTCTAATAAGTGACAAAATT-TAACACATGCCTCTGAT----A-TAAAGTAGCACCA-G-TTTCTC-CCACA--T-A--T-ACG-A-----ATTT-----------TTATTTTGCA--TTTTTTTGC-AGAACA-CT--CCATAAA-CT---A-CGTTACTG-GATTTACA-A-TT-A-A-TG-T--A-TTTTTA--ATATGA-T-AT--T-TGT-TGCC-GTT-ACA-ATC-CT-CG-AAT--TGG--TTAG----T-TTT-TATGAC-ATA-TTGACATAANATGCCA-ACTTTTTA-GC----A-CCACA--C-GGC--TCGCACAAG-TTT----TCT-TTTCTTTAAAAAA-----TAGA-TTATTATGTTTCTTATGTACCAAGATGTT-TTTTAAATTTGTNTGATTCT-T-CTGAAAAGCTACT-ATGGGCA
Reference ( family-737 ) : TCTA-AACACTTTC-TT-GAA-ATATT--TCGA-C-CGCGT-TAC-CG----G-TCTT----CATCAGT-C-G-T---GTTT-A-TT--T---TCCG-TAGC-AA--C-ACAAC--GCACG-A--CTA-C-ACA-CA-T-TAG--AGTA--------C--T--GTG-A-CG-TCAC--AG--T-GGA-TA-TTA-AG-TT-GAAC-AA--TAA----CG-TCA-CAG-TTGAAA-TT-ACGCG--CAAAA-CA--TTT---G-AAAA---TAG-T-AAG--AGTC-T----ATGAAATTAACAA---T--AGC-----TAAGTTAGCCGC-GTCGGC------------AT-----------G-ATAA-GCG--TAGAATGAAA-A-ATA--T-----GTAAGTAAT----GGTA-CAAAATA-TAGGGAAATT-ACGAACACAT-AGCAGTTG-ACTACT--GACCTACGT------CAA----AA-ATGCTTTCC--AAA--------ATATGC-CAT-TAGTAATT---AAA-TTA--TACA-TGTA-CA----------T---ACATAATTATACAAT-ATAAA-AAGAGTTA--T-------A----C-AACAAT--T---TT--TC--TA--TAT----TCTCTGTTTACA-TGTT--AAGA--CG----CA-TTTTTAAAG--ACAGAAATGTT-CCCGTTTGTTTA--TTCCGA-A-T--G--GT-GCGTAAGTG-TTCAATTTTTT--C-TTC--CATAGGT-TTTCTCTAAAATCGACGATAAATG--T--C-ATCTTTG-TAAAGC-TTTTCCAT-CC-T--ATTATAG--AATAATCACTTATAA-TTGTGAGAGTCCGTGC--A-AA-A-ATGAA-TAG-CTA-CCGGGTCGTC-AGTC-TTCCTTCTAATAAGTGACAAAATT-TAACACATGCCTCTGAT----A-TAAAGTAGCACCA-G-TTTCTC-CCACA--T-A--T-ACG-A-----ATTT-----------TTATTTTGCA--TTTTTTTGC-AGAACA-CT--CCATAAA-CT---A-CGTTACTG-GATTTACA-A-TT-A-A-TG-T--A-TTTTTA--ATATGA-T-AT--T-TGT-TGCC-GTT-ACA-ATC-CT-CG-AAT--TGG--TTAG----T-TTT-TATGAC-ATA-TTGACATAANATGCCA-ACTTTTTA-GC----A-CCACA--C-GGC--TCGCACAAG-TTT----TCT-TTTCTTTAAAAAA-----TAGA-TTATTATGTTTCTTATGTACCAAGATGTT-TTTTAAATTTGTNTGATTCT-T-CTGAAAAGCTACT-ATGGGCA
gi|1 : TCTATAACACTTTC-TT-GAAGATATT--TCGA-CACGCGT-TACTCT----G-TCTT----CATCAGT-C-G-T---GTTTTA-TT--T---TCCG--AGC-AA--CCACAAC--GCACA-AAACTA-C-ACA-AT-T-TAG--AGTA--------C--T--ATGGA-CGGTCAC--AG--T-GGAGTA-T-A-AG-TT-GAAC-AA--TAA----CG-TAAACAG-TTGAAA-T--ACGCG--CAAAAACA--TGT---G-AAAAA--TAG-T-AAG--AGTC-T----ATGAA-TTAACTA---A--AGC-----TATGTTAGCCGCCGTCGG--------------------------G-ATAAAGCGCTTAGAATGAAA-T-ACA--TACGTAGTAAGTAATTTGTAGCA-AAAAATA-TAGGGAAATTTACGAACACATCAGCAGTTG-ACTACT--AGCCTATG---------A----TA-ATA-TTTAC--AAACATGAACAGTATAC-CAT-TAGTAATT---AA--TTA--TACA-AGTA-CA----------T---ACATAATTATACAATTATAAA-AAGAGTTA--CTGGCAAAA----C-AATAATAAT---ATAACA--CA--TATAATATATATATTTACA-TGTT--AAGA--CG----CA-TGTT-AAAG--ACAGAAATGTT-CC-GTT-GTTTA--T-CCGA-A-T--GTGGT-GCGTAAGTGATTCAATTTTTT--C-TTC--CATAG---TTTCTCTAAA-TCGACGATAAATG--T--C-AC---TG-TTAAGC-TTTTCCAT-CC-CTAATTATAG--AATAATCACTTATA--TTGTGAGAGTCCGTGCCTATGA-A-ATGAAATAGACTA-CCGGGTCGTC-AGTCATTCCTTCTAATA-GTGACAAA-TT-AAACACATGCCTCTGAT----A-TAAAGTAGCAC-A-G-TTTCTC-CCACA--T-A--TTACG-A-------TT-----------TTATT--GC---TTTTTTTGC-AGGACA-CT--CCATAAAACT---A-CATTACTG-GATTAACA-AGTTGA-A-TA-TTAA-TTTTTA--ATATGA-T-ATCTT-TGT-TGCC-GTTTACA-ATC-CTGCGGAAT--TGGAGTTAGATTGT-TTT-TATGACCATAGTTGACATA-TATGC---ACTTTTTA-GCCCAAA-CCACA--T-GGC--TCGCACAAG-TTT----TCT-TTT-TTTAAAAAA-----TAGA-TTATTATGTTTCTTATGTACAAGAATGTC-TTTTAAAT---TCTTATTCTCT-CTG-AAAGCTACTGATGG
gi|1 : aaagtctctttcatcggagtaaaatttgaaacccacaaac-ACT-CT--GACC-GCCT------CAA----AA-ATGCTTTCC--AAAC-------ATATGC-CAT-CAGTAcatatgtttggaaagcatttttgaggcggtcagagtttctcaagaattttttgtcgatttttaaaattttatgaatattggaagtcctttagaatagtttacgtacaagggaccgatt
gi|10 : aaagtctctttcatcggagtaaaatttgaaacccacaaactctataacactttcttgaagatatttcgacacgcgttactctgtcttcatcagtcgtgttttattttccgagcaaccacaacgcacaaaactacacaatttagagtactatggacggtcacagtggagtataagttgaacaataacgtaaacagttgaaatacgcgcaaaaacatgtgaaaaatagtaagagtctatgaattaactaaagctatgttagccgccgtcgggataaagcgcttagaatgaaatacatacgtagtaagtaatttgtagcaaaaaatatagggaaatttacgaacacatcagcagttgactactagcctatgataatatttacaaacatgaacagtataccattagtaattaattatacaagtacatacataattatacaattataaaaagagttactggcaaaacaataataatataacacatataatatatatatttacatgttaagacgcatgttaaagacagaaatgttccgttgtttatccgaatgtggtgcgtaagtgattcaattttttcttccatagtttctctaaatcgacgataaatgtcactgttaagcttttccatccctaattatagaataatcacttatattgtgagagtccgtgcctatgaaatgaaatagactaccgggtcgtcagtcattccttctaatagtgacaaattaaacacatgcctctgatataaagtagcacagtttctcccacatattacgattttattgctttttttgcaggacactccataaaactacattactggattaacaagttgaatattaatttttaatatgatatctttgttgccgtttacaatcctgcggaattggagttagattgtttttatgaccatagttgacatatatgcactttttagcccaaaccacatggctcgcacaagttttctttttttaaaaaatagattattatgtttcttatgtacaagaatgtcttttaaattcttattctctctgaaagcGAGAGTCTGAGT--A-CA-A-ATGAA-TTG-CTA-CCGGGTCACC-AATT-TTCCTTCTAATAAGTG--------------------TC--------A-TCAAGTTGCCCCA-G-TT-----CCACACTT-A--T-GCA-ATTCATATTTAT---------TTATTTTGAA--TTTATT-AC-A-AACAATT--CCATAAA-AT---A-CGTT---------TA-----TT-A-A-TA-T--AATTTTTG--ATATGA-T-AT--T-TGT-TGCC-GTC-ACA-ATC-CT-AG-AAT--TGG--TTAC----T-TTT-AATAAT-ATA-TTGACATAAAATGCAA-ATATT----GC----A-CCACA--C-AGC--TTGCCCAGG-TTT----TCT-TTTCTAAAAAAAAAAAC-CAGA-TTAGAATGTTTCTTGTGTACATAAATGTT-TTTTGATTTTGTGTGATT-T-T-TTGAAAttctcaagaattttttgtcgatttttaaaattttatgaatattggaagtcctttagaatagtttacgtacaagggaccgatt
gi|11 : ----A-TAAAGCC-CATCAAG-TT-----CCACA--T-A--T--CGCA-----ATTTCATATTATTATTTATTTTGAA--TTATT---C-A-AACA-ATTCCCATAAA-AT---ATCGTT-----------TA-A-TT-ATA-TA----A-TTTTTG--ATATGAAT-AT--T-TGT-TGCCGGTC-ACA-ATC-CT-AG-AAT--TGG--TTA-----C-TTT-TATAAT-ATA-TTGACATAAAATGCAA-ATATT----GC----A-CCACA--CAAGC--TTGCCCAGG--TT----TCT-TTTCTAAAAAAAAAAACCAAGA-TTAGAATGTTTCTTGTGTACTAA-ATGTT-TTTTGATTTTGTGTGATT-T-T-TTGAAA
gi|12 : A-TTTTCAACG--GCAAATATGTT-CCCGTTTGTTTA--GTCCAA-A-C--G--AC-ACATA--------------TT--C-TTC--CTTAGAT-TTTCTTTAAAA-CGACGATAAAT--------ATCTTTG-TCAAG--TTTTCCATACA-T--ATTATAG--AAAAATTGTTTATA-----CGAGAATCTGTGT--A-GA-A-ATGAA-TAG-CTA-CAACGTCATT-AGTC-TCTCTTCTTATAAGTGAC-AAATT-CAACGCGTGCCTTTGAT----A-cctgagaactgtaaattttttggaa
gi|13 : cagtagttaattgtatatacatcaatactaacatggtaaaatcagtttatacaatttgaaaaaaaacacacatgcagaactttTCTA-AACACTTTC-TTTGAA-ATATT--TCGACC-CGCG--TAC-CG----G-TCTT----CATCAGT-C-GTT---GTTT-A-TT--TTTATCCG-TAGCAAA--C-AC-AC--CCACA-A--CT--C-ACA-CA-T-TAGTAAGTA--------CTTT--ATG-A-CG-TCACAAAG--T-GGA-TATTTA-AG--T-GAAC-AAATTAATTACCGTTCA-CAG-TTGAAA-TTAACGCGGACAAAA-CA--TTTAGGA-AAAA---TAG-T-AAAGTAGTC-G----ATG-AATTAACAAAGCT--AGCCTAATTAAGTTAGCCGC-GGCG
gi|14 : taaaattttttaaaaaaaaaaaaataaaaaaaaccgtctaccacTA-GACACTTTC-TT-GAA-GTATT--TTGA-C-TTTGG-TAT-CG----T-TCTT----CCTCAGT-C-A-T---GTTT-A-TT--T---T-----------------AAA--GCAAG-A--CTA-C-ATA-CA-T-AAG--ATTACTGACTAGC--T--GTG-A-CA-TCAC--AA--T-GGG-TA-TTACAT-TT-GATC-AG--TAA----CA-TCA-CAG-TTGAAA-TT-ACATG--CAAAA-CA--ATT---G-AAAAAGGTAATT-AAG--AGTC-TCATAATGAAATTAACAA---T--GGC-----T
gi|15 : gacaaattctttaatttgaaatatatgtatttacaaatgtacatataTAATT---AA--TTAAGTACACTGTA-C-----------T---ACATAAT-ATACAAT-ATAAA-AATAGTTA--T-------A----C-AACA-T--T---TT--CC--TA--T-T----TCTCTGTTTACA-TGTT--AAGA--CG----CA-TTTTTAAAGGGACAAAAAATTT-CCCGTTTGTTTA--TTCCGA-A-T--G--GT-GTGTAAGTG-TTCAA-TTTTT--C-TTCCTCATAGGTACTTCTCTAAAATCGACGATAAATG--TTCC-ATCTTTGTTAAAGC-TTTTCCAC-CC-T--ATTATAG--GA
gi|16 : GAGAGTCCGTGC--A-AA-A-ATGAA-TAG-CTA-CCAGGTCGTC-AGTT-TTCCTTCTAATAAa
gi|16 : AACAACT--CCATA---CT---A-CGTTACTG-AA--TACATA-TT-A-A-TG-T--A--ATTTA--ATATGA-T--T--T-TGTGTTCT-TTT-ACACACT-TT-CG-AAT--TGG--TTAG----T-TTT-TATG-C-ATA-TTGAC-TAA-ATGGCACGTTTTTTAGGC----ACCCACA--T-GGC--TCGCCTA----TT----TCT-GTAGTTTAGGAGA-----Tcaactccatactacgttactgaatacatattaatgtaatttaatatgattttgtgttcttttacacactttcgaattggttagtttttatgcatattgactaaatggcacgttttttaggcacccacatggctcgcctatttctgtagtttaggagat
gi|18 : gagagtccgtgcaaaaatgaatagctaccaggtcgtcagttttccttctaatTA-AACACTTTCCTT-GAA-A-ATT--TCGAAC-CGCGT-TAC-CG----GGTCTT----CATCAGT-C-G-T---GTTT---TT--T---TCCGCTAGC-AAA-C-ACAAC--GCAC--A--CTA-C-ACA-CA-T-TAG--AGTA-----------T--ATGCA-CG-TCAC--AGGGT-GGA-TA-TTA-AG-TT-GAAC-AA--TAA----CG-TCA-CTG-TTG-AA-TT-ACGTG---GAAA-CA--TTT---G-AAAA---TAG-T--AG--AATC-
gi|19 : actctG--ACAGAAGTGTT-CCCGCTTGTTTA--TTCCGA-A-T--G--GT-GCGTAAGTG-TTCAATTGTTT--C-TTC--CATAGGT-TTTCTCTAAA-TCGACGATAAATG--T--C-ATCTTTG-TAAAGC-TTTTCCATCCC-T--ATTATAG--AATAATCACTTAT-A-TTGTGAGAGTCCGTGC--A-AA-A-ATGAA-TAG-CTA-CCAGGTCGTC-AGTT-TTCCTTCTAATAAgacaatagt
gi|2 : TCTA-AACACTTTC-TT-GAA-ATATT--TCGA-C-CGCGT-TAC-CG----G-TCTT----CATCAGT-C-G-T---GTTT-A-TT--T---TCCG-TAGC-AA--C-ACAAC--GCACA-A--CTA-C-ACA-CA-T-TAG--AGTA--------C--T--ATG-A-CG-TCAC--AG--T-GGA-TA-TTA-AG-TT-GAAC-AA--TAA----CG-TCA-CAG-TTGAAA-TT-ACGCG--CAAAA-CA--TTT---G-AAAA---TAG-T-AAG--AGTC-T----ATGAA-TTAACAA---T--AGC-----TATGTTAGCCGC-GTCGGC------------AT-------------ATAA-GCG--TAGAATGAAATACATACGT-----GTAAGTAAT----GGTA-CAAAATA-TAGGGAAATT-ACGAACACTG-ATTCGT-A-AC-ACT--GACC-GCCT------CAA----AA-ATGCTTTCC--AAA--------ATAT-C-CATCTAGTAATT---AAA-TTA--TACA-TGTATCA----------T---ACATA-TTAT----T-ACAGATAAGAGTTA--T-------A----C-AACAAT--T---TT--TC--TA--GAT----ATTCTAATTAAA-TGTT--AAGA--CG----CA-TTTTTAAAG--ACAGAAATGTT-CCCGTTTGTTTT--ATGTGA-ATT--A--TT-CCGTAAGTG--TCAATTTTTTTCT-TTC--CATAGG--TTTCTCTAAAATCGACGATAAATG--T--CGATCTTTG-TACAGC-TTTTCC-T-CC-T--ATTATAG--AA-AATCACTTATAA-TTGTGAGAGTCCGTGC--A-AACACATGAA-TAG-CTATCCGGGTCGTCAAGTC-TTCCTTCTAATAAGTGACAAAATT-TAACACATGCTTCTGATGAGGG-TAAAGTAGCACCA-G-TTTCTC-CCACA--TAA--T-ACG-A-----ATTT-----------TTATTTTGCAATTTTTTTTGC-AGAACA-CT---CAT-AA-CT---A-CATTACTGCAATTTACA-A-TT-A-A-TG-T--A-TTTTAA--ATATGATT-AT--TGTGT-T-TC-GTT-ATA-ATC-CT-CG-AAT--TGG--TTAG----TATTTGTATGAC-ATA--TGACATAATATGTCG-ACTATTTA-GC----A-C--CA--C-GGC--TCGCACAAGTTTT----TCTGTTTCTTTAAAAAA-----TAGA-TTCTTGTGTTCCTTATGTGCCAAGATGTT-CTTTAAA-TTGTAC--TTCT-T-CTGAAAAGCTACT-ATGGGCA
gi|21 : -CAAGACA-GAGGGGAAGT-ATGAACACAC-AGCAGTTG-ACTCCT--GACCTATGT------
gi|22 : --T--GTG-A-TG-TCAC--AA--T-GAA-TA-TTA-AC-TT-TATC-AG--TAA----CA-CCA-TAG-TTGAAA-TT-ACGTG--CAAGG-CA--TTT---G-TAAA---AAG-T-AAG--AATC-T----ATGAAATTAACAA---TACAGC-----TTACCTACCCCC-CTCGACAA----------ATCCCCAAGAAGGA-ATAA-GCG--TAGAAT--AA-A-ATA--T-----ATAAGTAAgtgacggtcatgatgaacggtgatgtgcgaagaaacagtgataaattaacctaatcacctaacatagagtggtagacgtaatttgaaccattatgataattataatattgatgtggcatttaa
gi|23 : A-AACACTTTT-CT-GAA-ATATTTCTCGA-C-C-CGTATAC-CGGGTCG-TTGT----CATCAGT-CAG-TTTGATTT-A-TTAAT---CCCG-TAGC-GA----ACAA---ACA-G-A--CGG-A-ACA-AA-T-TAT--A-TA--------C--T--
gi|24 : aaactcTA-AACACT--------GA-ATATT--TTGA-C-CACAT-TAC-CA----G-CCCTA---CCTTAGTCC-G-T---GTTT-A-TT--TA--TAC--TAGC-Aaaacacatcaattatgtagttttgactatgaaacgtca
gi|25 : atattataatttatgaaaaagtctcttatatccaagaaaaatgtaaaaagctctaaagctaTA-AACACTTTC-TT-AAA-ATATT--TCAA-C-CG--------------G-TCTT----CATCAGT-T-G-T---GTTT-A-TT--T---TCCG-TAGC-AA--A-ACAAC--GCACG-G--TTA-C-ATA-CA-T-AAG--AGTA--------C--T--GTG-A-CA-TCAC--AA--T-GGA-AA-GTA-AG-TT-tatcataaatgcaat
gi|26 : taaaaactgggaacctgTCCTAATAAGTGACAAAATTCTAACACATGCCTCTGA-----A-TAAAGTAGCACCA-GTTTTCTC-CCACA--T-A--T-AC--A-----ATTT-----------TTA--TTGCA-----TTTTGCAAGAACA-CT--CCATAAA-CT---A-C-TTAATG-atgca
gi|27 : TTA--T-------AATTGC-AACAATA-T---TT--TCAATAAATAT----TATTTGTT-ACA-TGTTTTAAGAATCGATATTA-TTTTAAAAG--ACAG-AATGTTCCCCGTTTGAT----TTTCGA-A-T--taa
gi|28 : agagttaatTAC-GCG--TTGAATCAAA-A------T-----ATAAGTAAT----CTTA-CAAGATA-GAGGAAAAGT-ATGAACACAC-AGCAGTTG-ACT
gi|29 : tttttggataattattctttggtttaacgatTTC-TC-TAA-ATATT--TCAC-C-CATGT-TAC-CA----A-CCTTCCTGCATCAG----------GTTC-A--T--T---GCTA-TAGC-AA--C-AAACC--ACATG-A--CCAGC-ATA-CA-TCTTG--AA-A--------T--C--GTG-A-CA-TCAC--Attgaacca
gi|3 : ATA-TAGGGAAATT-ACGAACACAT-AGCAATTG-ACTACT--GACCTATGTGATTTACAA----AC-ATG---------AA--------ATATTA-CAT-TAGTAATTTTAAAA-TTG--TACA-TGTA-CAATGCAGTACAT---ACATAATTATACAAT-ATAAA-AATAGTTAAAT-------A----C-AACAAT--T---TT---C--TA--TAT----TCTCTGTTTACA-TGGT--AAGA--TG----CA-TTTTTAAGG--ACAAAAATGTT-CCCGTTTGTTTA--TTCCGA-A-TCGG--GT-GTGTAAGTG-TTCAATTTTTT--C-TTC--CATAGGT-TTTCTCTAAA-TTGACGATAAATG--T--C-TTCTTTG-TAAAGC-TTTTCCAT-CCTT--ATTATAT--AATAATCACTTA-AA-TTGTGAGAGTCCGTGC--A-AA-A-ATGAA-TAG-CTA-CCGGGTCGTC-AGTC-TTCCTTCTAATAAGTGAC-AAATT-TAACACATGCCTCTGAT----A-TAAAGTAGCACCA-G-TTTCTC-CCACA--T-A--T-ACA-A-------TT-----------TTA--TTGCA---TTTTTTGC-AGAACA-CT--CCATAAA-CT---A-CATTACTG-GATTTGCA-A-TT-A-A-TGTT--G-TTTTTAATATATGA-T-AT--T-TGT-TGCC-GTT-ACA-ATC-CT-CG-AAT--TGG--TTAG----T-TTT-TATGAC-ATATTTGACATAATATG-CA---TTTTTA-GC----A-CCACA--T-GGC--TCGCACAAG-TTT----TCT-TT--TTTAAAAAA-----TAGA-TTATTATGTTTCTTATGTACCAAGATGCT-TTTAAAATTCTTAT--CTCT-T-CTG-AAAGCTACT-ATGGGCA
gi|3 : -ACT-CT--GACC-GCCT------CAA----AA-ATGCTTTCCAAAAA--------ATATGC-CCA-TAGTAtattttttggaaagcatttttgaggcggtcagagttctcaagaattttttgtcgattttttaaaaattttatgaattttggaaagtcctttagaatagttt
gi|30 : atatagggaaattacgaacacatagcaattgactactgacctatgtgatttacaaacatgaaatattacattagtaattttaaaattgtacatgtacaatgcagtacatacataattatacaatataaaaatagttaaatacaacaattttctatattctctgtttacatggtaagatgcatttttaaggacaaaaatgttcccgtttgtttattccgaatcgggtgtgtaagtgttcaattttttcttccataggttttctctaaattgacgataaatgtcttctttgtaaagcttttccatccttattatataataatcacttaaattgtgagagtccgtgcaaaaatgaatagctaccgggtcgtcagtcttccttctaataagtgacaaatttaacacatgcctctgatataaagtagcaccagtttctcccacatatacaattttattgcattttttgcagaacactccataaactacattactggatttgcaattaatgttgtttttaatatatgatatttgttgccgttacaatcctcgaattggttagtttttatgacatatttgacataatatgcatttttagcaccacatggctcgcacaagttttcttttttaaaaaatagattattatgtttcttatgtaccaagatgcttttaaaattcttatctcttctgaaagcTTC-TC-TAA-ATATT--TCAC-C-CATGT-TAC-CA----A-CCTTCCTGCATCAG----------GTTC-A--T--T---GCTA-TAGC-AA--C-AAACC--ACATG-A--CCAGC-ATA-CA-TCTTG--AA-A--------T--C--GTG-A-CA-TCAC--Atctcaagaattttttgtcgattttttaaaaattttatgaattttggaaagtcctttagaatagttt
gi|31 : TCTA-AACACTCTC-TT-GAA-ATATT--TCGA-C-CGTAT-TAC-CA----G-TTTT----CCTCAGT-C-G-T---GTTT-A-TT--T---TC
gi|32 : cagtcttttttatcggagtaaaatttaaaaaaaacaacAA-ATATT--T--A-C-CGCAT-TAC-CA----G-TTTT----CCTCAAT-C-G-T---GTTT-A-T
gi|35 : aaaaaaccaaaacctctagattagactaaaatactgaAAAGTCACATCA-C-ATTTTC-CCACA--T-AAAT-ACG-A-------TT-----------CTATT--G-A--TTTTTTTGC-AAAACA-
gi|37 : ---TCTG-TAGC-AA--C-ACGAC--TCACG-A--CCA-C-ATA-C--C-TAG--AGTA--------T--T--GTG-A-CG-TCAC--AG--
gi|38 : CCA-AACACTTTC-TT-GAA-CTATG--TTGA-C-CGCAT-TTC-CG----G-TGTT----gg
gi|39 : aacgTCTA-AACACTTTC-TT-GAA--TATT--TCGA-C-CGCGT-TAC-CG----G-TCCT----
gi|4 : cccTCAATTTTTT--C-TTC--CATAGGT-TT-CTCTAAA-TCGACGATAAATG--T--C-ATCTTTG-TACAGCATGTTACCT-CC-C---TTATAG--AATAAT-ACTTATAATTTGTGAGAGTCCGTGC--A-AA-A-ATGAA-TAG-CTA-CCGGGTCGTC-AGTC-TTCCTTCTAATAAGTGACAAATTT-TAACACATGCCTCT-AT----ATTAAAGTA-CACCA-G--TTCTCTCCACA--T-A--T-ACG-A-------TT-----------TTA-TTTGC---TTTTTTTGC-AGAAAA-CT--CCATTAA-CTTACA-CTTTACTG-GATTTACA-A-TT-A-ATTG-TA-A-TTTTTA--AT-TGA-TAAT--T-TGT-TGCC-GTT-ACA-ATC-CT-C--AATGGTGG--TTAG------TTT-TATAAC-ATATTTGACTTAAT-TAGCA-TTTTTTTA-GC----A-CCACATTT-GGCTTTCGCACAAG-TTTTTTCTTT-TTTCTTT-AAAAA-----TAGATTTATTGTGTTTCTTATGTACCAAGATGTTCTTTTAAAATTTTCTATCTCT-TGCTGATAAGCTACT-ATGGGC
gi|4 : ACTC-GACCGCTGT------CAA----AAAATGCTTTCC---AA--------ATAAGC-CCA-TAGTAttatttggaaagcattttttgacagcggtcgagtttcaagaatttttatttgtcgattttgttaaaattttcattgaatattgggaaagtcctttagaatagtttactacaaggggaacacgattattttaccgctttctctttttctgtagtta
gi|40 : tcaattttttcttccataggtttctctaaatcgacgataaatgtcatctttgtacagcatgttacctcccttatagaataatacttataatttgtgagagtccgtgcaaaaatgaatagctaccgggtcgtcagtcttccttctaataagtgacaaattttaacacatgcctctatattaaagtacaccagttctctccacatatacgattttatttgctttttttgcagaaaactccattaacttacactttactggatttacaattaattgtaatttttaattgataatttgttgccgttacaatcctcaatggtggttagttttataacatatttgacttaattagcatttttttagcaccacatttggctttcgcacaagttttttcttttttctttaaaaatagatttattgtgtttcttatgtaccaagatgttcttttaaaattttctatctcttgctgataagcTCTA-AACACTTTC-TT-GAA-ATATT--TCGA-C-TGCGT-TAC-CG----G-TCTT----ttcaagaatttttatttgtcgattttgttaaaattttcattgaatattgggaaagtcctttagaatagtttactacaaggggaacacgattattttaccgctttctctttttctgtagtta
gi|5 : acTCTA-AACACTTTC-TT-GAA-ATATT--TCGA-C-CGCGT--AC-CG----G-TCTT----CATAAGT-C-G-T---GTTT-A-TT--T---TCCG-TAGC-AAAAC-ACAACACGCACATA--CTA-C-ACAACACT-TAG--AGTAA-------C--TAAGTG-AACG-TCAC--AG--T-GGA-TT-TTA-AG-TTTGAACCAA--TAA----CG-TCA-CAA-TTGAAA-TT-ACGCG--CAAAA-CA--TTT---G-AAAA---TAG-T-AAG--AGTC------ATTGAATTAACAA---T---GC-----TAAGTTAGCCGC-GTCGGC------------AT-------------AT-A-GCG--T-GAATG--A-A-ATA--T-----ATAAGTAAT----GGTACCAAAATA-TAGGGAAATT-ACGAACACAT-AGCAGTTGAACTACTGAGACCTATGTGAATTACAA----AC-ATG--------AAA--------ATATACAAAT-TAGTAATT---AAAGTTA--TACA-TGTA-CA----------TATAACATAATTA-ACAAT-ATAAA-AAGAGTTA--T--------------AACAAT--TCTATT--TC--TA---------GCTATGTTTACA-TGTT--AAGA--CG----CATTTTTTAAAG--ACAGAAATGTT-CCCGGTTGTTTAATTTCCGACA-T--G--GTGGCGTAAGTG-TTCAATTTTTT--CTTTC--CATAG---TTTCTCT-AAATCGACGATAAAAGATC--C-ATCTTTG-TACAGC-TTTT-CATCCC-T--ATTATAGTAAATAATCACT
gi|6 : aaagtctctttatcggagtaaaattaaaaaaaaaacCGC-TAC-CG----G-TCTT----CATCAGT-C-G-T---GTTT-A-TT--T---TTCT-TAGC-AA--C-A----------G-A----------A-CA-T-TAG--AGTA--------C--T--ATG-A-CG-TCAC--AG--T-GGA-TA-aag
gi|6 : tcttgagtatgtccggcgtacatcgtt--------ATATAC-CAA-TATTAACT---AA--TTG--TACA-TGTA-CA----------T---ACATAATTATACAAT-ATAAA-AAGAGTTA--T-------A----C-AACAAT--T---TT---C--TA--TAT----TCTCTGTTTACA-TGTT--AAGA--CG----CA-TTTTTAAAG--ACAGAAATGTT-CCCGTTTGTTTA--TTCCGA-A-T--G--GT-GCGTAAGTG-TTC-ATTTTTT--T-TTCTTCATAGGT-TTTCTCT-AAATCGATGATAAACG--T--C-TTCTTTG-TAAAAC-Tnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncatataccaatattaactaattgtacatgtacatacataattatacaatataaaaagagttatacaacaattttctatattctctgtttacatgttaagacgcatttttaaagacagaaatgttcccgtttgtttattccgaatggtgcgtaagtgttcatttttttttcttcataggttttctctaaatcgatgataaacgtcttctttgtaaaact
gi|7 : tcttgagtatgtccggcgtacatcgttcgctaccggtcttcatcagtcgtgtttatttttcttagcaacagaacattagagtactatgacgtcacagtggatannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncTCTA-AACACTTTC-TT-GAA-ATATT--TCGA-C-CGCGT-TAC-CG----G-TCTT----CATCAGT-C-G-T---GTTT-ATTT--T---TCCG-TAGC-AA--C-ACA----------A--CTA-CAACA-CA-T-TAG--AGTA--------C--T--ATG-A-CG-TCAC--AG--TGGGA-TA-TTA-AGTTT-GAAC-AA--TAA----CG-TCA-CAGTTTGAAATTT-ATGCG--CCAAA-CATGTTT---GAAAAA---TAG-TAAAG--AGTCTT----ATGAAATTAACAA---T--AGC-----TAAGTTAGCCGC-GTCGGC------------AT-------------ATAA-G-G--TAGAATG--A-A-ATA--T-----ATAAGT-AT----GGTA-CAAAATATTAGGGAAA-T-ACGAACACAT-AGCAGTTG-ACTACT--GACCTATGT------GAATTACAACATG---------AA--------ATATAC-CAT-TAGTAATT----AA-TTA--TACA-TGTA-CA----------T---ACATAATTATACAAT-ATAAA-AAGAGTTA--T-------A----CAAACAA---T---TT--TC--TA--CAT----TCTATGTTTACATTGTT--AAGA--CG----CA-TTTTTAAAG--ACAGAAATG
gi|8 : ataatacaaaagtctctcatcggagtaaaatttaaaaaaaaaaaaaacaaacG--ACAGAAGTGTT-CC-GCTTGTTAT--TTCCGA-A-T--G--GT-GCGTAAGTG-TTCAATTGTTT--C-TTC--CATAGGT-TTTCTCT-AAATCGACGATAAATG--T--C-ATCTTTG-TAAAGC--TTTCCATCCC-T--ATTATAG--AA-AATCACTTAT-A-TTGTGAGAGTCCGTGC--A-AA-A-ATGAA-TA--CTA-CCAGGTCGTC-AGTT-TTCCTTCTAATAACTGAC-AAATT-TAACACATGCCTCTGAT----A-TAAAGTAGCACAG-G-TTTTCC-CCACA--T-A--T-ACG-A-------TT-----------TTA--TTGCA---TTTTTAGC-AGAACA-CT--CCATAAA-CT---A-CGTTACTG-GA--TACA-A-TT-A-A-TG-TA-A-TTTTTA--ATATGA-T-AT--T-TGT-GTCT-TTT-ACA-ATCTTT-CG-AAT--TGG--TTAG----T-TTT-TATGAC-ATA-TTGACATAAAATGC---ACTTTTTA-GC----A-CCACA--T-GGC--TCGC
gi|9 : -GAA-ATATT--TCGA-C-CGCGT-TAC-CG----G-TCTT----CATCAGT-C-G-T---GTTT-A-TT--T---TCCG-TAGC-AA--C-ACAAC--GTACA-A--CTA-C-ACA-CA-T-TAG--AGTA--------C--T--ATG-A-CG-TCAC--AG--T-GGA-TA-TTA-AG-TT-GAAC-AA--TAA----CG-TCA-CAC-TTGAAA-TT-ACGCG--CAAAA-CA--TTT---G-AAAA---TAG-T-AAG--AGTC-T----AT-AAATTAACAA---T--AGC-----TAAGTTAGCCGT-GTCCGCGTATCTTCAAGGAT-----------GAATAA-GCG--TAGACTG--A-A-ATA--T-----GTAAGTAAT----GGTA-CAAAATA-TAGGGAAATT-ACGAACACAT-AGCAGTTG-ATTACT--GACCTATGT------GAA----cttt
5 sequences could not be aligned to this reference sequence:
Unaligned ( gi|17 ): TTTTTTTATTGAATAAATTCTTTTATATGTACCAAAATGCCTCTCTTCCGAAATGCTACATGTAATATGGGCGTATTTCTAAAAGCCTTCTTGGAGTGGTCAAAGTTCTCAAATTTTTTTTTTTTTTGAATATTGGAAAGTCCATTGGAAAGTCCTTTATATCAGAAAAGGAACGCGATTACACCGTTTCGTCTTTTTACTGTAGTT
Unaligned ( gi|20 ): TCTTTTATAGTTACCAAAATGCCTCTTCTTCCGAAATGCTACATGTTAATATGGGCGTATTTTTAAAAGCCTTCTTGGACGTGGTCAAAGTTCTCAAAATTTTTTTTTTTGAATATTGGAAAGTCCATTGGAAAGTCCTTTATATCAGAAAAGGAACGCGATTACACCGTTTCGTCTTTTTACTCGTAGTTACA
Unaligned ( gi|33 ): AGACGTAATCTGAACCACTATACTAATTTAAAATTTATGTGGCATTTAAGAGTGGTTTATATTNATGATT
Unaligned ( gi|34 ): ATATATTACAAAGTCTCTTTCATCGGCAAGTTAAAATTAAAAAAAAATAACTCTAAACACTTTCTT
Unaligned ( gi|36 ): ATATATAAAGTCTCTTTCATAGGAGTAAAATTAAAAAACTCTGAACACTTTATT
Alignments
lowQualScore : 1111 11111111111 111 111111 11111 888888888888888888888888888 111 11111 1111 22222222222 1111111 2222222222222222222 111 11 22222222222222 222222222222 11 111 111111111 1111 11 1 1 111 1 44444444444444444444 111 11111 11111 1111 1 111111 1 222222 1111 1111 1111 22222 11 1
lowQualScore : 2 2 2 2 33 4 2 2 2 4444 2 1111 2 2 2 444 2 2 33 666 2 2 66 2 444 555 33 5 2 2 2 5 33 33333333333 33 5 2 2 33 44 3 3 3 4 4 4 4 66 9999 4 4 4 4 4 66 4 66 777 4 222 4 4 66 555555 3 999999 22222 5 999999999999999999999999999 5 77 1 777 666 77 44444 4444 5 5 3 5 5 4 3 99 33333333333 0000000 9999999999999999999 5 4 4 000 77 77 5 5 66666666666666 5 5 66 444444444444 5 11 888 333 66 333333333 1 5 66 66 0000 4 1 55 4 55 4 4 55 66 4 4 55 4 11 666 5 0 55555 4 4 4 7 4 66 66 6 555 66 4 4 4 4 4 4 4 4 2 3 5 99999 4 2 4 4 1 4 66 4 66 4 4 22222222222222222222 333 66666 2 4 2 8 66 4 777 4 3 1 33333 5 5 5 5 5 9999 5 66 0 5 66 5 5 2 5 5 5 5 5 5 66 66 444444 5 5 5 0 5 000000 3 5 0000 5 1111 66 1 2 77 2222 5 66 66666 6 1 3 6 3 2 1 66 6 6 6 7 0
lowQualScore : . . . . .. . . . . .... . .... . . . ... . . .. ... . . .. . ... ... .. . . . . . .. ........... .. . . . .. .. . . . . . . . .. .... . . . . . .. . .. ... . ... . . .. ...... . ...... ..... . ........................... . .. . ... ... .. ..... .... . . . . . . . .. ........... ....... ................... . . . ... .. .. . . .............. . . .. ............ . .. ... ... .. ......... . . .. .. .... . . .. . .. . . .. .. . . .. . .. ... . . ..... . . . . . .. .. . ... .. . . . . . . . . . . . ..... . . . . . . .. . .. . . .................... ... ..... . . . . .. . ... . . . ..... . . . . . .... . .. . . .. . . . . . . . . . .. .. ...... . . . . . ...... . . .... . .... .. . . .. .... . .. ..... . . . . . . . .. . . . . .
lowQualScore : 9 5 4 2 11 4 2 1 1 5555 1 1111 5 5 5 444 5 5 77 999 7 7 88 9 555 111 99 7 9 9 9 7 99 99999999999 77 7 9 9 99 66 6 6 6 0 0 0 4 11 4444 4 4 4 4 4 11 4 11 888 4 222 4 4 11 222222 2 999999 55555 7 333333333333333333333333333 7 99 7 444 111 99 33333 2222 7 0 1 0 0 0 2 55 66666666666 7777777 4444444444444444444 4 4 4 000 77 99 7 7 00000000000000 7 7 99 000000000000 0 99 888 999 99 666666666 4 0 99 99 6666 4 0 00 0 55 0 0 55 11 4 4 55 0 00 333 7 6 99999 0 0 0 8 4 11 11 5 777 11 4 4 4 4 4 4 4 4 4 4 0 66666 4 9 4 4 9 4 11 4 11 4 4 99999999999999999999 777 44444 0 4 9 0 11 4 888 4 7 9 99999 0 0 0 0 0 0000 0 99 0 0 99 0 0 5 0 0 0 0 0 0 99 99 666666 0 0 0 4 9 555555 2 0 6666 0 9999 99 3 3 11 1111 7 00 44444 7 0 7 7 5 5 0 88 7 7 7 3 0
consensus : TCTA-AACACTTTC-TT-GAA-ATATT--TCGA-C-CGCGT-TAC-CG----G-TCTT----CATCAGT-C-G-T---GTTT-A-TT--T---TCCG-TAGC-AA--C-ACAAC--GCACG-A--CTA-C-ACA-CA-T-TAG--AGTA--------C--T--GTG-A-CG-TCAC--AG--T-GGA-TA-TTA-AG-TT-GAAC-AA--TAA----CG-TCA-CAG-TTGAAA-TT-ACGCG--CAAAA-CA--TTT---G-AAAA---TAG-T-AAG--AGTC-T----ATGAAATTAACAA---T--AGC-----TAAGTTAGCCGC-GTCGGC------------AT-----------G-ATAA-GCG--TAGAATGAAA-A-ATA--T-----GTAAGTAAT----GGTA-CAAAATA-TAGGGAAATT-ACGAACACAT-AGCAGTTG-ACTACT--GACCTACGT------CAA----AA-ATGCTTTCC--AAA--------ATATGC-CAT-TAGTAATT---AAA-TTA--TACA-TGTA-CA----------T---ACATAATTATACAAT-ATAAA-AAGAGTTA--T-------A----C-AACAAT--T---TT--TC--TA--TAT----TCTCTGTTTACA-TGTT--AAGA--CG----CA-TTTTTAAAG--ACAGAAATGTT-CCCGTTTGTTTA--TTCCGA-A-T--G--GT-GCGTAAGTG-TTCAATTTTTT--C-TTC--CATAGGT-TTTCTCTAAAATCGACGATAAATG--T--C-ATCTTTG-TAAAGC-TTTTCCAT-CC-T--ATTATAG--AATAATCACTTATAA-TTGTGAGAGTCCGTGC--A-AA-A-ATGAA-TAG-CTA-CCGGGTCGTC-AGTC-TTCCTTCTAATAAGTGACAAAATT-TAACACATGCCTCTGAT----A-TAAAGTAGCACCA-G-TTTCTC-CCACA--T-A--T-ACG-A-----ATTT-----------TTATTTTGCA--TTTTTTTGC-AGAACA-CT--CCATAAA-CT---A-CGTTACTG-GATTTACA-A-TT-A-A-TG-T--A-TTTTTA--ATATGA-T-AT--T-TGT-TGCC-GTT-ACA-ATC-CT-CG-AAT--TGG--TTAG----T-TTT-TATGAC-ATA-TTGACATAANATGCCA-ACTTTTTA-GC----A-CCACA--C-GGC--TCGCACAAG-TTT----TCT-TTTCTTTAAAAAA-----TAGA-TTATTATGTTTCTTATGTACCAAGATGTT-TTTTAAATTTGTNTGATTCT-T-CTGAAAAGCTACT-ATGGGCA
Reference ( family-737 ) : TCTA-AACACTTTC-TT-GAA-ATATT--TCGA-C-CGCGT-TAC-CG----G-TCTT----CATCAGT-C-G-T---GTTT-A-TT--T---TCCG-TAGC-AA--C-ACAAC--GCACG-A--CTA-C-ACA-CA-T-TAG--AGTA--------C--T--GTG-A-CG-TCAC--AG--T-GGA-TA-TTA-AG-TT-GAAC-AA--TAA----CG-TCA-CAG-TTGAAA-TT-ACGCG--CAAAA-CA--TTT---G-AAAA---TAG-T-AAG--AGTC-T----ATGAAATTAACAA---T--AGC-----TAAGTTAGCCGC-GTCGGC------------AT-----------G-ATAA-GCG--TAGAATGAAA-A-ATA--T-----GTAAGTAAT----GGTA-CAAAATA-TAGGGAAATT-ACGAACACAT-AGCAGTTG-ACTACT--GACCTACGT------CAA----AA-ATGCTTTCC--AAA--------ATATGC-CAT-TAGTAATT---AAA-TTA--TACA-TGTA-CA----------T---ACATAATTATACAAT-ATAAA-AAGAGTTA--T-------A----C-AACAAT--T---TT--TC--TA--TAT----TCTCTGTTTACA-TGTT--AAGA--CG----CA-TTTTTAAAG--ACAGAAATGTT-CCCGTTTGTTTA--TTCCGA-A-T--G--GT-GCGTAAGTG-TTCAATTTTTT--C-TTC--CATAGGT-TTTCTCTAAAATCGACGATAAATG--T--C-ATCTTTG-TAAAGC-TTTTCCAT-CC-T--ATTATAG--AATAATCACTTATAA-TTGTGAGAGTCCGTGC--A-AA-A-ATGAA-TAG-CTA-CCGGGTCGTC-AGTC-TTCCTTCTAATAAGTGACAAAATT-TAACACATGCCTCTGAT----A-TAAAGTAGCACCA-G-TTTCTC-CCACA--T-A--T-ACG-A-----ATTT-----------TTATTTTGCA--TTTTTTTGC-AGAACA-CT--CCATAAA-CT---A-CGTTACTG-GATTTACA-A-TT-A-A-TG-T--A-TTTTTA--ATATGA-T-AT--T-TGT-TGCC-GTT-ACA-ATC-CT-CG-AAT--TGG--TTAG----T-TTT-TATGAC-ATA-TTGACATAANATGCCA-ACTTTTTA-GC----A-CCACA--C-GGC--TCGCACAAG-TTT----TCT-TTTCTTTAAAAAA-----TAGA-TTATTATGTTTCTTATGTACCAAGATGTT-TTTTAAATTTGTNTGATTCT-T-CTGAAAAGCTACT-ATGGGCA
gi|1 : TCTATAACACTTTC-TT-GAAGATATT--TCGA-CACGCGT-TACTCT----G-TCTT----CATCAGT-C-G-T---GTTTTA-TT--T---TCCG--AGC-AA--CCACAAC--GCACA-AAACTA-C-ACA-AT-T-TAG--AGTA--------C--T--ATGGA-CGGTCAC--AG--T-GGAGTA-T-A-AG-TT-GAAC-AA--TAA----CG-TAAACAG-TTGAAA-T--ACGCG--CAAAAACA--TGT---G-AAAAA--TAG-T-AAG--AGTC-T----ATGAA-TTAACTA---A--AGC-----TATGTTAGCCGCCGTCGG--------------------------G-ATAAAGCGCTTAGAATGAAA-T-ACA--TACGTAGTAAGTAATTTGTAGCA-AAAAATA-TAGGGAAATTTACGAACACATCAGCAGTTG-ACTACT--AGCCTATG---------A----TA-ATA-TTTAC--AAACATGAACAGTATAC-CAT-TAGTAATT---AA--TTA--TACA-AGTA-CA----------T---ACATAATTATACAATTATAAA-AAGAGTTA--CTGGCAAAA----C-AATAATAAT---ATAACA--CA--TATAATATATATATTTACA-TGTT--AAGA--CG----CA-TGTT-AAAG--ACAGAAATGTT-CC-GTT-GTTTA--T-CCGA-A-T--GTGGT-GCGTAAGTGATTCAATTTTTT--C-TTC--CATAG---TTTCTCTAAA-TCGACGATAAATG--T--C-AC---TG-TTAAGC-TTTTCCAT-CC-CTAATTATAG--AATAATCACTTATA--TTGTGAGAGTCCGTGCCTATGA-A-ATGAAATAGACTA-CCGGGTCGTC-AGTCATTCCTTCTAATA-GTGACAAA-TT-AAACACATGCCTCTGAT----A-TAAAGTAGCAC-A-G-TTTCTC-CCACA--T-A--TTACG-A-------TT-----------TTATT--GC---TTTTTTTGC-AGGACA-CT--CCATAAAACT---A-CATTACTG-GATTAACA-AGTTGA-A-TA-TTAA-TTTTTA--ATATGA-T-ATCTT-TGT-TGCC-GTTTACA-ATC-CTGCGGAAT--TGGAGTTAGATTGT-TTT-TATGACCATAGTTGACATA-TATGC---ACTTTTTA-GCCCAAA-CCACA--T-GGC--TCGCACAAG-TTT----TCT-TTT-TTTAAAAAA-----TAGA-TTATTATGTTTCTTATGTACAAGAATGTC-TTTTAAAT---TCTTATTCTCT-CTG-AAAGCTACTGATGG
gi|1 : aaagtctctttcatcggagtaaaatttgaaacccacaaac-ACT-CT--GACC-GCCT------CAA----AA-ATGCTTTCC--AAAC-------ATATGC-CAT-CAGTAcatatgtttggaaagcatttttgaggcggtcagagtttctcaagaattttttgtcgatttttaaaattttatgaatattggaagtcctttagaatagtttacgtacaagggaccgatt
gi|10 : aaagtctctttcatcggagtaaaatttgaaacccacaaactctataacactttcttgaagatatttcgacacgcgttactctgtcttcatcagtcgtgttttattttccgagcaaccacaacgcacaaaactacacaatttagagtactatggacggtcacagtggagtataagttgaacaataacgtaaacagttgaaatacgcgcaaaaacatgtgaaaaatagtaagagtctatgaattaactaaagctatgttagccgccgtcgggataaagcgcttagaatgaaatacatacgtagtaagtaatttgtagcaaaaaatatagggaaatttacgaacacatcagcagttgactactagcctatgataatatttacaaacatgaacagtataccattagtaattaattatacaagtacatacataattatacaattataaaaagagttactggcaaaacaataataatataacacatataatatatatatttacatgttaagacgcatgttaaagacagaaatgttccgttgtttatccgaatgtggtgcgtaagtgattcaattttttcttccatagtttctctaaatcgacgataaatgtcactgttaagcttttccatccctaattatagaataatcacttatattgtgagagtccgtgcctatgaaatgaaatagactaccgggtcgtcagtcattccttctaatagtgacaaattaaacacatgcctctgatataaagtagcacagtttctcccacatattacgattttattgctttttttgcaggacactccataaaactacattactggattaacaagttgaatattaatttttaatatgatatctttgttgccgtttacaatcctgcggaattggagttagattgtttttatgaccatagttgacatatatgcactttttagcccaaaccacatggctcgcacaagttttctttttttaaaaaatagattattatgtttcttatgtacaagaatgtcttttaaattcttattctctctgaaagcGAGAGTCTGAGT--A-CA-A-ATGAA-TTG-CTA-CCGGGTCACC-AATT-TTCCTTCTAATAAGTG--------------------TC--------A-TCAAGTTGCCCCA-G-TT-----CCACACTT-A--T-GCA-ATTCATATTTAT---------TTATTTTGAA--TTTATT-AC-A-AACAATT--CCATAAA-AT---A-CGTT---------TA-----TT-A-A-TA-T--AATTTTTG--ATATGA-T-AT--T-TGT-TGCC-GTC-ACA-ATC-CT-AG-AAT--TGG--TTAC----T-TTT-AATAAT-ATA-TTGACATAAAATGCAA-ATATT----GC----A-CCACA--C-AGC--TTGCCCAGG-TTT----TCT-TTTCTAAAAAAAAAAAC-CAGA-TTAGAATGTTTCTTGTGTACATAAATGTT-TTTTGATTTTGTGTGATT-T-T-TTGAAAttctcaagaattttttgtcgatttttaaaattttatgaatattggaagtcctttagaatagtttacgtacaagggaccgatt
gi|11 : ----A-TAAAGCC-CATCAAG-TT-----CCACA--T-A--T--CGCA-----ATTTCATATTATTATTTATTTTGAA--TTATT---C-A-AACA-ATTCCCATAAA-AT---ATCGTT-----------TA-A-TT-ATA-TA----A-TTTTTG--ATATGAAT-AT--T-TGT-TGCCGGTC-ACA-ATC-CT-AG-AAT--TGG--TTA-----C-TTT-TATAAT-ATA-TTGACATAAAATGCAA-ATATT----GC----A-CCACA--CAAGC--TTGCCCAGG--TT----TCT-TTTCTAAAAAAAAAAACCAAGA-TTAGAATGTTTCTTGTGTACTAA-ATGTT-TTTTGATTTTGTGTGATT-T-T-TTGAAA
gi|12 : A-TTTTCAACG--GCAAATATGTT-CCCGTTTGTTTA--GTCCAA-A-C--G--AC-ACATA--------------TT--C-TTC--CTTAGAT-TTTCTTTAAAA-CGACGATAAAT--------ATCTTTG-TCAAG--TTTTCCATACA-T--ATTATAG--AAAAATTGTTTATA-----CGAGAATCTGTGT--A-GA-A-ATGAA-TAG-CTA-CAACGTCATT-AGTC-TCTCTTCTTATAAGTGAC-AAATT-CAACGCGTGCCTTTGAT----A-cctgagaactgtaaattttttggaa
gi|13 : cagtagttaattgtatatacatcaatactaacatggtaaaatcagtttatacaatttgaaaaaaaacacacatgcagaactttTCTA-AACACTTTC-TTTGAA-ATATT--TCGACC-CGCG--TAC-CG----G-TCTT----CATCAGT-C-GTT---GTTT-A-TT--TTTATCCG-TAGCAAA--C-AC-AC--CCACA-A--CT--C-ACA-CA-T-TAGTAAGTA--------CTTT--ATG-A-CG-TCACAAAG--T-GGA-TATTTA-AG--T-GAAC-AAATTAATTACCGTTCA-CAG-TTGAAA-TTAACGCGGACAAAA-CA--TTTAGGA-AAAA---TAG-T-AAAGTAGTC-G----ATG-AATTAACAAAGCT--AGCCTAATTAAGTTAGCCGC-GGCG
gi|14 : taaaattttttaaaaaaaaaaaaataaaaaaaaccgtctaccacTA-GACACTTTC-TT-GAA-GTATT--TTGA-C-TTTGG-TAT-CG----T-TCTT----CCTCAGT-C-A-T---GTTT-A-TT--T---T-----------------AAA--GCAAG-A--CTA-C-ATA-CA-T-AAG--ATTACTGACTAGC--T--GTG-A-CA-TCAC--AA--T-GGG-TA-TTACAT-TT-GATC-AG--TAA----CA-TCA-CAG-TTGAAA-TT-ACATG--CAAAA-CA--ATT---G-AAAAAGGTAATT-AAG--AGTC-TCATAATGAAATTAACAA---T--GGC-----T
gi|15 : gacaaattctttaatttgaaatatatgtatttacaaatgtacatataTAATT---AA--TTAAGTACACTGTA-C-----------T---ACATAAT-ATACAAT-ATAAA-AATAGTTA--T-------A----C-AACA-T--T---TT--CC--TA--T-T----TCTCTGTTTACA-TGTT--AAGA--CG----CA-TTTTTAAAGGGACAAAAAATTT-CCCGTTTGTTTA--TTCCGA-A-T--G--GT-GTGTAAGTG-TTCAA-TTTTT--C-TTCCTCATAGGTACTTCTCTAAAATCGACGATAAATG--TTCC-ATCTTTGTTAAAGC-TTTTCCAC-CC-T--ATTATAG--GA
gi|16 : GAGAGTCCGTGC--A-AA-A-ATGAA-TAG-CTA-CCAGGTCGTC-AGTT-TTCCTTCTAATAAa
gi|16 : AACAACT--CCATA---CT---A-CGTTACTG-AA--TACATA-TT-A-A-TG-T--A--ATTTA--ATATGA-T--T--T-TGTGTTCT-TTT-ACACACT-TT-CG-AAT--TGG--TTAG----T-TTT-TATG-C-ATA-TTGAC-TAA-ATGGCACGTTTTTTAGGC----ACCCACA--T-GGC--TCGCCTA----TT----TCT-GTAGTTTAGGAGA-----Tcaactccatactacgttactgaatacatattaatgtaatttaatatgattttgtgttcttttacacactttcgaattggttagtttttatgcatattgactaaatggcacgttttttaggcacccacatggctcgcctatttctgtagtttaggagat
gi|18 : gagagtccgtgcaaaaatgaatagctaccaggtcgtcagttttccttctaatTA-AACACTTTCCTT-GAA-A-ATT--TCGAAC-CGCGT-TAC-CG----GGTCTT----CATCAGT-C-G-T---GTTT---TT--T---TCCGCTAGC-AAA-C-ACAAC--GCAC--A--CTA-C-ACA-CA-T-TAG--AGTA-----------T--ATGCA-CG-TCAC--AGGGT-GGA-TA-TTA-AG-TT-GAAC-AA--TAA----CG-TCA-CTG-TTG-AA-TT-ACGTG---GAAA-CA--TTT---G-AAAA---TAG-T--AG--AATC-
gi|19 : actctG--ACAGAAGTGTT-CCCGCTTGTTTA--TTCCGA-A-T--G--GT-GCGTAAGTG-TTCAATTGTTT--C-TTC--CATAGGT-TTTCTCTAAA-TCGACGATAAATG--T--C-ATCTTTG-TAAAGC-TTTTCCATCCC-T--ATTATAG--AATAATCACTTAT-A-TTGTGAGAGTCCGTGC--A-AA-A-ATGAA-TAG-CTA-CCAGGTCGTC-AGTT-TTCCTTCTAATAAgacaatagt
gi|2 : TCTA-AACACTTTC-TT-GAA-ATATT--TCGA-C-CGCGT-TAC-CG----G-TCTT----CATCAGT-C-G-T---GTTT-A-TT--T---TCCG-TAGC-AA--C-ACAAC--GCACA-A--CTA-C-ACA-CA-T-TAG--AGTA--------C--T--ATG-A-CG-TCAC--AG--T-GGA-TA-TTA-AG-TT-GAAC-AA--TAA----CG-TCA-CAG-TTGAAA-TT-ACGCG--CAAAA-CA--TTT---G-AAAA---TAG-T-AAG--AGTC-T----ATGAA-TTAACAA---T--AGC-----TATGTTAGCCGC-GTCGGC------------AT-------------ATAA-GCG--TAGAATGAAATACATACGT-----GTAAGTAAT----GGTA-CAAAATA-TAGGGAAATT-ACGAACACTG-ATTCGT-A-AC-ACT--GACC-GCCT------CAA----AA-ATGCTTTCC--AAA--------ATAT-C-CATCTAGTAATT---AAA-TTA--TACA-TGTATCA----------T---ACATA-TTAT----T-ACAGATAAGAGTTA--T-------A----C-AACAAT--T---TT--TC--TA--GAT----ATTCTAATTAAA-TGTT--AAGA--CG----CA-TTTTTAAAG--ACAGAAATGTT-CCCGTTTGTTTT--ATGTGA-ATT--A--TT-CCGTAAGTG--TCAATTTTTTTCT-TTC--CATAGG--TTTCTCTAAAATCGACGATAAATG--T--CGATCTTTG-TACAGC-TTTTCC-T-CC-T--ATTATAG--AA-AATCACTTATAA-TTGTGAGAGTCCGTGC--A-AACACATGAA-TAG-CTATCCGGGTCGTCAAGTC-TTCCTTCTAATAAGTGACAAAATT-TAACACATGCTTCTGATGAGGG-TAAAGTAGCACCA-G-TTTCTC-CCACA--TAA--T-ACG-A-----ATTT-----------TTATTTTGCAATTTTTTTTGC-AGAACA-CT---CAT-AA-CT---A-CATTACTGCAATTTACA-A-TT-A-A-TG-T--A-TTTTAA--ATATGATT-AT--TGTGT-T-TC-GTT-ATA-ATC-CT-CG-AAT--TGG--TTAG----TATTTGTATGAC-ATA--TGACATAATATGTCG-ACTATTTA-GC----A-C--CA--C-GGC--TCGCACAAGTTTT----TCTGTTTCTTTAAAAAA-----TAGA-TTCTTGTGTTCCTTATGTGCCAAGATGTT-CTTTAAA-TTGTAC--TTCT-T-CTGAAAAGCTACT-ATGGGCA
gi|21 : -CAAGACA-GAGGGGAAGT-ATGAACACAC-AGCAGTTG-ACTCCT--GACCTATGT------
gi|22 : --T--GTG-A-TG-TCAC--AA--T-GAA-TA-TTA-AC-TT-TATC-AG--TAA----CA-CCA-TAG-TTGAAA-TT-ACGTG--CAAGG-CA--TTT---G-TAAA---AAG-T-AAG--AATC-T----ATGAAATTAACAA---TACAGC-----TTACCTACCCCC-CTCGACAA----------ATCCCCAAGAAGGA-ATAA-GCG--TAGAAT--AA-A-ATA--T-----ATAAGTAAgtgacggtcatgatgaacggtgatgtgcgaagaaacagtgataaattaacctaatcacctaacatagagtggtagacgtaatttgaaccattatgataattataatattgatgtggcatttaa
gi|23 : A-AACACTTTT-CT-GAA-ATATTTCTCGA-C-C-CGTATAC-CGGGTCG-TTGT----CATCAGT-CAG-TTTGATTT-A-TTAAT---CCCG-TAGC-GA----ACAA---ACA-G-A--CGG-A-ACA-AA-T-TAT--A-TA--------C--T--
gi|24 : aaactcTA-AACACT--------GA-ATATT--TTGA-C-CACAT-TAC-CA----G-CCCTA---CCTTAGTCC-G-T---GTTT-A-TT--TA--TAC--TAGC-Aaaacacatcaattatgtagttttgactatgaaacgtca
gi|25 : atattataatttatgaaaaagtctcttatatccaagaaaaatgtaaaaagctctaaagctaTA-AACACTTTC-TT-AAA-ATATT--TCAA-C-CG--------------G-TCTT----CATCAGT-T-G-T---GTTT-A-TT--T---TCCG-TAGC-AA--A-ACAAC--GCACG-G--TTA-C-ATA-CA-T-AAG--AGTA--------C--T--GTG-A-CA-TCAC--AA--T-GGA-AA-GTA-AG-TT-tatcataaatgcaat
gi|26 : taaaaactgggaacctgTCCTAATAAGTGACAAAATTCTAACACATGCCTCTGA-----A-TAAAGTAGCACCA-GTTTTCTC-CCACA--T-A--T-AC--A-----ATTT-----------TTA--TTGCA-----TTTTGCAAGAACA-CT--CCATAAA-CT---A-C-TTAATG-atgca
gi|27 : TTA--T-------AATTGC-AACAATA-T---TT--TCAATAAATAT----TATTTGTT-ACA-TGTTTTAAGAATCGATATTA-TTTTAAAAG--ACAG-AATGTTCCCCGTTTGAT----TTTCGA-A-T--taa
gi|28 : agagttaatTAC-GCG--TTGAATCAAA-A------T-----ATAAGTAAT----CTTA-CAAGATA-GAGGAAAAGT-ATGAACACAC-AGCAGTTG-ACT
gi|29 : tttttggataattattctttggtttaacgatTTC-TC-TAA-ATATT--TCAC-C-CATGT-TAC-CA----A-CCTTCCTGCATCAG----------GTTC-A--T--T---GCTA-TAGC-AA--C-AAACC--ACATG-A--CCAGC-ATA-CA-TCTTG--AA-A--------T--C--GTG-A-CA-TCAC--Attgaacca
gi|3 : ATA-TAGGGAAATT-ACGAACACAT-AGCAATTG-ACTACT--GACCTATGTGATTTACAA----AC-ATG---------AA--------ATATTA-CAT-TAGTAATTTTAAAA-TTG--TACA-TGTA-CAATGCAGTACAT---ACATAATTATACAAT-ATAAA-AATAGTTAAAT-------A----C-AACAAT--T---TT---C--TA--TAT----TCTCTGTTTACA-TGGT--AAGA--TG----CA-TTTTTAAGG--ACAAAAATGTT-CCCGTTTGTTTA--TTCCGA-A-TCGG--GT-GTGTAAGTG-TTCAATTTTTT--C-TTC--CATAGGT-TTTCTCTAAA-TTGACGATAAATG--T--C-TTCTTTG-TAAAGC-TTTTCCAT-CCTT--ATTATAT--AATAATCACTTA-AA-TTGTGAGAGTCCGTGC--A-AA-A-ATGAA-TAG-CTA-CCGGGTCGTC-AGTC-TTCCTTCTAATAAGTGAC-AAATT-TAACACATGCCTCTGAT----A-TAAAGTAGCACCA-G-TTTCTC-CCACA--T-A--T-ACA-A-------TT-----------TTA--TTGCA---TTTTTTGC-AGAACA-CT--CCATAAA-CT---A-CATTACTG-GATTTGCA-A-TT-A-A-TGTT--G-TTTTTAATATATGA-T-AT--T-TGT-TGCC-GTT-ACA-ATC-CT-CG-AAT--TGG--TTAG----T-TTT-TATGAC-ATATTTGACATAATATG-CA---TTTTTA-GC----A-CCACA--T-GGC--TCGCACAAG-TTT----TCT-TT--TTTAAAAAA-----TAGA-TTATTATGTTTCTTATGTACCAAGATGCT-TTTAAAATTCTTAT--CTCT-T-CTG-AAAGCTACT-ATGGGCA
gi|3 : -ACT-CT--GACC-GCCT------CAA----AA-ATGCTTTCCAAAAA--------ATATGC-CCA-TAGTAtattttttggaaagcatttttgaggcggtcagagttctcaagaattttttgtcgattttttaaaaattttatgaattttggaaagtcctttagaatagttt
gi|30 : atatagggaaattacgaacacatagcaattgactactgacctatgtgatttacaaacatgaaatattacattagtaattttaaaattgtacatgtacaatgcagtacatacataattatacaatataaaaatagttaaatacaacaattttctatattctctgtttacatggtaagatgcatttttaaggacaaaaatgttcccgtttgtttattccgaatcgggtgtgtaagtgttcaattttttcttccataggttttctctaaattgacgataaatgtcttctttgtaaagcttttccatccttattatataataatcacttaaattgtgagagtccgtgcaaaaatgaatagctaccgggtcgtcagtcttccttctaataagtgacaaatttaacacatgcctctgatataaagtagcaccagtttctcccacatatacaattttattgcattttttgcagaacactccataaactacattactggatttgcaattaatgttgtttttaatatatgatatttgttgccgttacaatcctcgaattggttagtttttatgacatatttgacataatatgcatttttagcaccacatggctcgcacaagttttcttttttaaaaaatagattattatgtttcttatgtaccaagatgcttttaaaattcttatctcttctgaaagcTTC-TC-TAA-ATATT--TCAC-C-CATGT-TAC-CA----A-CCTTCCTGCATCAG----------GTTC-A--T--T---GCTA-TAGC-AA--C-AAACC--ACATG-A--CCAGC-ATA-CA-TCTTG--AA-A--------T--C--GTG-A-CA-TCAC--Atctcaagaattttttgtcgattttttaaaaattttatgaattttggaaagtcctttagaatagttt
gi|31 : TCTA-AACACTCTC-TT-GAA-ATATT--TCGA-C-CGTAT-TAC-CA----G-TTTT----CCTCAGT-C-G-T---GTTT-A-TT--T---TC
gi|32 : cagtcttttttatcggagtaaaatttaaaaaaaacaacAA-ATATT--T--A-C-CGCAT-TAC-CA----G-TTTT----CCTCAAT-C-G-T---GTTT-A-T
gi|35 : aaaaaaccaaaacctctagattagactaaaatactgaAAAGTCACATCA-C-ATTTTC-CCACA--T-AAAT-ACG-A-------TT-----------CTATT--G-A--TTTTTTTGC-AAAACA-
gi|37 : ---TCTG-TAGC-AA--C-ACGAC--TCACG-A--CCA-C-ATA-C--C-TAG--AGTA--------T--T--GTG-A-CG-TCAC--AG--
gi|38 : CCA-AACACTTTC-TT-GAA-CTATG--TTGA-C-CGCAT-TTC-CG----G-TGTT----gg
gi|39 : aacgTCTA-AACACTTTC-TT-GAA--TATT--TCGA-C-CGCGT-TAC-CG----G-TCCT----
gi|4 : cccTCAATTTTTT--C-TTC--CATAGGT-TT-CTCTAAA-TCGACGATAAATG--T--C-ATCTTTG-TACAGCATGTTACCT-CC-C---TTATAG--AATAAT-ACTTATAATTTGTGAGAGTCCGTGC--A-AA-A-ATGAA-TAG-CTA-CCGGGTCGTC-AGTC-TTCCTTCTAATAAGTGACAAATTT-TAACACATGCCTCT-AT----ATTAAAGTA-CACCA-G--TTCTCTCCACA--T-A--T-ACG-A-------TT-----------TTA-TTTGC---TTTTTTTGC-AGAAAA-CT--CCATTAA-CTTACA-CTTTACTG-GATTTACA-A-TT-A-ATTG-TA-A-TTTTTA--AT-TGA-TAAT--T-TGT-TGCC-GTT-ACA-ATC-CT-C--AATGGTGG--TTAG------TTT-TATAAC-ATATTTGACTTAAT-TAGCA-TTTTTTTA-GC----A-CCACATTT-GGCTTTCGCACAAG-TTTTTTCTTT-TTTCTTT-AAAAA-----TAGATTTATTGTGTTTCTTATGTACCAAGATGTTCTTTTAAAATTTTCTATCTCT-TGCTGATAAGCTACT-ATGGGC
gi|4 : ACTC-GACCGCTGT------CAA----AAAATGCTTTCC---AA--------ATAAGC-CCA-TAGTAttatttggaaagcattttttgacagcggtcgagtttcaagaatttttatttgtcgattttgttaaaattttcattgaatattgggaaagtcctttagaatagtttactacaaggggaacacgattattttaccgctttctctttttctgtagtta
gi|40 : tcaattttttcttccataggtttctctaaatcgacgataaatgtcatctttgtacagcatgttacctcccttatagaataatacttataatttgtgagagtccgtgcaaaaatgaatagctaccgggtcgtcagtcttccttctaataagtgacaaattttaacacatgcctctatattaaagtacaccagttctctccacatatacgattttatttgctttttttgcagaaaactccattaacttacactttactggatttacaattaattgtaatttttaattgataatttgttgccgttacaatcctcaatggtggttagttttataacatatttgacttaattagcatttttttagcaccacatttggctttcgcacaagttttttcttttttctttaaaaatagatttattgtgtttcttatgtaccaagatgttcttttaaaattttctatctcttgctgataagcTCTA-AACACTTTC-TT-GAA-ATATT--TCGA-C-TGCGT-TAC-CG----G-TCTT----ttcaagaatttttatttgtcgattttgttaaaattttcattgaatattgggaaagtcctttagaatagtttactacaaggggaacacgattattttaccgctttctctttttctgtagtta
gi|5 : acTCTA-AACACTTTC-TT-GAA-ATATT--TCGA-C-CGCGT--AC-CG----G-TCTT----CATAAGT-C-G-T---GTTT-A-TT--T---TCCG-TAGC-AAAAC-ACAACACGCACATA--CTA-C-ACAACACT-TAG--AGTAA-------C--TAAGTG-AACG-TCAC--AG--T-GGA-TT-TTA-AG-TTTGAACCAA--TAA----CG-TCA-CAA-TTGAAA-TT-ACGCG--CAAAA-CA--TTT---G-AAAA---TAG-T-AAG--AGTC------ATTGAATTAACAA---T---GC-----TAAGTTAGCCGC-GTCGGC------------AT-------------AT-A-GCG--T-GAATG--A-A-ATA--T-----ATAAGTAAT----GGTACCAAAATA-TAGGGAAATT-ACGAACACAT-AGCAGTTGAACTACTGAGACCTATGTGAATTACAA----AC-ATG--------AAA--------ATATACAAAT-TAGTAATT---AAAGTTA--TACA-TGTA-CA----------TATAACATAATTA-ACAAT-ATAAA-AAGAGTTA--T--------------AACAAT--TCTATT--TC--TA---------GCTATGTTTACA-TGTT--AAGA--CG----CATTTTTTAAAG--ACAGAAATGTT-CCCGGTTGTTTAATTTCCGACA-T--G--GTGGCGTAAGTG-TTCAATTTTTT--CTTTC--CATAG---TTTCTCT-AAATCGACGATAAAAGATC--C-ATCTTTG-TACAGC-TTTT-CATCCC-T--ATTATAGTAAATAATCACT
gi|6 : aaagtctctttatcggagtaaaattaaaaaaaaaacCGC-TAC-CG----G-TCTT----CATCAGT-C-G-T---GTTT-A-TT--T---TTCT-TAGC-AA--C-A----------G-A----------A-CA-T-TAG--AGTA--------C--T--ATG-A-CG-TCAC--AG--T-GGA-TA-aag
gi|6 : tcttgagtatgtccggcgtacatcgtt--------ATATAC-CAA-TATTAACT---AA--TTG--TACA-TGTA-CA----------T---ACATAATTATACAAT-ATAAA-AAGAGTTA--T-------A----C-AACAAT--T---TT---C--TA--TAT----TCTCTGTTTACA-TGTT--AAGA--CG----CA-TTTTTAAAG--ACAGAAATGTT-CCCGTTTGTTTA--TTCCGA-A-T--G--GT-GCGTAAGTG-TTC-ATTTTTT--T-TTCTTCATAGGT-TTTCTCT-AAATCGATGATAAACG--T--C-TTCTTTG-TAAAAC-Tnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncatataccaatattaactaattgtacatgtacatacataattatacaatataaaaagagttatacaacaattttctatattctctgtttacatgttaagacgcatttttaaagacagaaatgttcccgtttgtttattccgaatggtgcgtaagtgttcatttttttttcttcataggttttctctaaatcgatgataaacgtcttctttgtaaaact
gi|7 : tcttgagtatgtccggcgtacatcgttcgctaccggtcttcatcagtcgtgtttatttttcttagcaacagaacattagagtactatgacgtcacagtggatannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncTCTA-AACACTTTC-TT-GAA-ATATT--TCGA-C-CGCGT-TAC-CG----G-TCTT----CATCAGT-C-G-T---GTTT-ATTT--T---TCCG-TAGC-AA--C-ACA----------A--CTA-CAACA-CA-T-TAG--AGTA--------C--T--ATG-A-CG-TCAC--AG--TGGGA-TA-TTA-AGTTT-GAAC-AA--TAA----CG-TCA-CAGTTTGAAATTT-ATGCG--CCAAA-CATGTTT---GAAAAA---TAG-TAAAG--AGTCTT----ATGAAATTAACAA---T--AGC-----TAAGTTAGCCGC-GTCGGC------------AT-------------ATAA-G-G--TAGAATG--A-A-ATA--T-----ATAAGT-AT----GGTA-CAAAATATTAGGGAAA-T-ACGAACACAT-AGCAGTTG-ACTACT--GACCTATGT------GAATTACAACATG---------AA--------ATATAC-CAT-TAGTAATT----AA-TTA--TACA-TGTA-CA----------T---ACATAATTATACAAT-ATAAA-AAGAGTTA--T-------A----CAAACAA---T---TT--TC--TA--CAT----TCTATGTTTACATTGTT--AAGA--CG----CA-TTTTTAAAG--ACAGAAATG
gi|8 : ataatacaaaagtctctcatcggagtaaaatttaaaaaaaaaaaaaacaaacG--ACAGAAGTGTT-CC-GCTTGTTAT--TTCCGA-A-T--G--GT-GCGTAAGTG-TTCAATTGTTT--C-TTC--CATAGGT-TTTCTCT-AAATCGACGATAAATG--T--C-ATCTTTG-TAAAGC--TTTCCATCCC-T--ATTATAG--AA-AATCACTTAT-A-TTGTGAGAGTCCGTGC--A-AA-A-ATGAA-TA--CTA-CCAGGTCGTC-AGTT-TTCCTTCTAATAACTGAC-AAATT-TAACACATGCCTCTGAT----A-TAAAGTAGCACAG-G-TTTTCC-CCACA--T-A--T-ACG-A-------TT-----------TTA--TTGCA---TTTTTAGC-AGAACA-CT--CCATAAA-CT---A-CGTTACTG-GA--TACA-A-TT-A-A-TG-TA-A-TTTTTA--ATATGA-T-AT--T-TGT-GTCT-TTT-ACA-ATCTTT-CG-AAT--TGG--TTAG----T-TTT-TATGAC-ATA-TTGACATAAAATGC---ACTTTTTA-GC----A-CCACA--T-GGC--TCGC
gi|9 : -GAA-ATATT--TCGA-C-CGCGT-TAC-CG----G-TCTT----CATCAGT-C-G-T---GTTT-A-TT--T---TCCG-TAGC-AA--C-ACAAC--GTACA-A--CTA-C-ACA-CA-T-TAG--AGTA--------C--T--ATG-A-CG-TCAC--AG--T-GGA-TA-TTA-AG-TT-GAAC-AA--TAA----CG-TCA-CAC-TTGAAA-TT-ACGCG--CAAAA-CA--TTT---G-AAAA---TAG-T-AAG--AGTC-T----AT-AAATTAACAA---T--AGC-----TAAGTTAGCCGT-GTCCGCGTATCTTCAAGGAT-----------GAATAA-GCG--TAGACTG--A-A-ATA--T-----GTAAGTAAT----GGTA-CAAAATA-TAGGGAAATT-ACGAACACAT-AGCAGTTG-ATTACT--GACCTATGT------GAA----cttt
blockSeqs : . C T . TC C . A . GGTC G CCTG C A T TTG . T AA TTA C A AA . ACG CAT . G A A C C TA CTGACTAGC AA C A . AA GG G . T C T T C AT TTAC T . T T A GA . TG AGG A AGG T A GT TCATA A AGCT CTAAT . AAATCCCCAAGAAGGA . . A GAA TAC CG . . C T T . . A A GA TATGTGATTTA TTACAAC CTTTCCAAAAA G A C TTA AG AG C T ATGCAGTACAT . T AA AATTG A A CTA C AA AATAT C T TT AT ATAT T C GG C AT C T CG . G . TC T CT GTA A A TTC G T A A T . TA A AAT . . C C . . T A . A A C TGAGG T G A T T T CT A AA . C ATTTCATATTATTAT TTT CAATT T A G A TC . TAC T G A CAATT T . . T T TT A AT A A . G G G G . C T . . GG . TA G . T A GCACGT T G . C TTT TT C G TT TTTC G TC AAACC T A A C T G G GA C . G A .
blockSeqs : . . . . . A . . . . . CCTG . . . . . . . A . . A . C CA . G . . . C . CTT . . . . . . . . . . . . . . . . . . . . . . . . . . . . . TT A TAC . . GTATCTTCAAGGATGA . . A CAA A . . . . . G . . . C C TATGTGAATTA AAA CTTTCCAAAC T . . . A . . . TATA . . . A . . . T . GAT C . . . . . T . . . . . . . . . . . TT AT A A ATC . . . C . . . T AA . . . . . . . . . A A . T . G . . T . . . . . . TTCATATTTAT TTT AAT T . G A . . . . G A GATT . . . . . TA . . T . . . . G . . . . . . . . T . . T A CAAAT T . . . CA . C G T . . TC AAAC . T G . T G G GA C . . A .
blockSeqs : . . . . . . . . . . . A . . . . . . . . . . . . G AG . . . . . . . AC . . . . . . . . . . . . . . . . . . . . . . . . . . . . . G A T . . AT . . T A A . . . . . G . . . A . TATGT AA CTTTCCAAA G . . . A . . . T . . . A . . . T . TAT T . . . . . T . . . . . . . . . . . . GT A A T . . . C . . . T AA . . . . . . . . . A A . T . G . . T . . . . . . ATTT TTT AAT T . G . . . . . G A GATT . . . . . TA . . . . . . . T . . . . . . . . C . . . T CAAAT T . . . C . C A T . . AG . . C G . T G A AT C . . A .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . . . G CA . . . . . . . C . . . . . . . . . . . . . . . . . . . . . . . . . . . . . T A T . . AT . . A G A . . . . . T . . . A . GCTGT AA CTTTCCAA G . . . A . . . T . . . A . . . T . TAT C . . . . . A . . . . . . . . . . . . GT A A T . . . C . . . T A . . . . . . . . . . A . T . G . . T . . . . . . ATTT TT CA T . A . . . . . A A AA . . . . . T . . . . . . . G . . . . . . . . T . . . T TCGAC T . . . T . A A T . . TC . . C G . A T A . . . . A
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . . . G CG . . . . . . . C . . . . . . . . . . . . . . . . . . . . . . . . . . . . . T A T . . AT . . A G A . . . . . T . . . A . TATGT AC AAA A . . . . . . . T . . . A . . . T . CAT A . . . . . T . . . . . . . . . . . . GT A A T . . . . . . . T A . . . . . . . . . . T . T . A . . T . . . . . . TT TT CA T . G . . . . . A A GA . . . . . T . . . . . . . G . . . . . . . . T . . . T GCATT T . . . C . A A . . . TC . . C . . . T C . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . . . A TG . . . . . . . C . . . . . . . . . . . . . . . . . . . . . . . . . . . . . T A T . . . . . G A . . . . T . . . A . TATGT AA AA A . . . . . . . T . . . A . . . . . TT C . . . . . T . . . . . . . . . . . . GT A A T . . . . . . . . A . . . . . . . . . . A . . . G . . T . . . . . . TT T AT A . G . . . . . T A . . . . . . T . . . . . . . T . . . . . . . . T . . . A CAC . . . . T . A . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . . . G TG . . . . . . . T . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . T . . . . . . A . GCCT AC AA A . . . . . . . . . . A . . . . . T . . . . . . . . . . . . GT . . T . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . TT T CT . . . . . . . . G . . . . . . . . . . . . . . . . . . . . . . . . . . . . . CA . . . . T .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . . . A CG . . . . . . . T . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . GCCT . . . . T . . . . . . . . . . . . G . . T . . . . . . . . . . . . . . . . . . . . . . . . . . . TT T CA . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . . . A CA . . . . . . . T . . . . . . . . . . . . . . . GCCT . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . . . T C . . . . . . . C . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . . . G G . . . . . . . C . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . . . . G . . . . . . . C . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . .
blockSeqs : . . . . . . . . .
blockSeqs : . . . . .
blockSeqCons : ** *** AT************************* ** G** ***** **** TGCGT****** CTTTCCAAA********** A* A*********** ** T** TAT****** ** GT* ** ** TT* GA*** T*** ** ** T***** CNAAT* **** TC
originalCons : TCTA-AACACTTTC-TT-GAA-ATATT--TCGA-C-CGCGT-TAC-CG----G-TCTT----CATCAGT-C-G-T---GTTT-A-TT--T---TCCG-TAGC-AA--C-ACAAC--GCACG-A--CTA-C-ACA-CA-T-TAG--AGTA--------C--T--GTG-A-CG-TCAC--AG--T-GGA-TA-TTA-AG-TT-GAAC-AA--TAA----CG-TCA-CAG-TTGAAA-TT-ACGCG--CAAAA-CA--TTT---G-AAAA---TAG-T-AAG--AGTC-T----ATGAAATTAACAA---T--AGC-----TAAGTTAGCCGC-GTCGGC------------AT-----------G-ATAA-GCG--TAGAATGAAA-A-ATA--T-----GTAAGTAAT----GGTA-CAAAATA-TAGGGAAATT-ACGAACACAT-AGCAGTTG-ACTACT--GACCTACGT------CAA----AA-ATGCTTTCC--AAA--------ATATGC-CAT-TAGTAATT---AAA-TTA--TACA-TGTA-CA----------T---ACATAATTATACAAT-ATAAA-AAGAGTTA--T-------A----C-AACAAT--T---TT--TC--TA--TAT----TCTCTGTTTACA-TGTT--AAGA--CG----CA-TTTTTAAAG--ACAGAAATGTT-CCCGTTTGTTTA--TTCCGA-A-T--G--GT-GCGTAAGTG-TTCAATTTTTT--C-TTC--CATAGGT-TTTCTCTAAAATCGACGATAAATG--T--C-ATCTTTG-TAAAGC-TTTTCCAT-CC-T--ATTATAG--AATAATCACTTATAA-TTGTGAGAGTCCGTGC--A-AA-A-ATGAA-TAG-CTA-CCGGGTCGTC-AGTC-TTCCTTCTAATAAGTGACAAAATT-TAACACATGCCTCTGAT----A-TAAAGTAGCACCA-G-TTTCTC-CCACA--T-A--T-ACG-A-----ATTT-----------TTATTTTGCA--TTTTTTTGC-AGAACA-CT--CCATAAA-CT---A-CGTTACTG-GATTTACA-A-TT-A-A-TG-T--A-TTTTTA--ATATGA-T-AT--T-TGT-TGCC-GTT-ACA-ATC-CT-CG-AAT--TGG--TTAG----T-TTT-TATGAC-ATA-TTGACATAANATGCCA-ACTTTTTA-GC----A-CCACA--C-GGC--TCGCACAAG-TTT----TCT-TTTCTTTAAAAAA-----TAGA-TTATTATGTTTCTTATGTACCAAGATGTT-TTTTAAATTTGTNTGATTCT-T-CTGAAAAGCTACT-ATGGGCA
finalCons : TCTA-AACACTTTC-TT-GAA-ATATT--TCGA-C-CGCGT-TAC-CG----G-TCTT----CATCAGT-C-G-T---GTTT-A-TT--T---TCCG-TAGC-AA--C-ACAAC--GCACG-A--CTA-C-ACA-CA-T-TAG--AGTA--------C--T--GTG-A-CG-TCAC--AG--T-GGA-TA-TTA-AG-TT-GAAC-AA--TAA----CG-TCA-CAG-TTGAAA-TT-ACGCG--CAAAA-CA--TTT---G-AAAA---TAG-T-AAG--AGTC-T----ATGAAATTAACAA---T--AGC-----TAAGTTAGCCGC-GTCGGCAT-------------------------ATAA-GCG--TAGAATG--A-A-ATA--T-----GTAAGTAAT----GGTA-CAAAATA-TAGGGAAATT-ACGAACACAT-AGCAGTTG-ACTACT--GACCTGCGT------CAA----AA-ATGCTTTCCAAA----------ATATGC-CAT-TAGTAATT---AAA-TTA--TACA-TGTA-CA----------T---ACATAATTATACAAT-ATAAA-AAGAGTTA--TA-----------C-AACAAT--T---TTT--C--TATAT------TCTCTGTTTACA-TGTT--AAGA--CG----CA-TTTTTAAAG--ACAGAAATGTT-CCCGTTTGTTTA--TTCCGA-A-T--G--GT-GCGTAAGTG-TTCAATTTTTT--C-TTC--CATAGGT-TTTCTCTAAAATCGACGATAAATG--T--C-ATCTTTG-TAAAGC-TTTTCCAT-CC-T--ATTATAG--AATAATCACTTATAA-TTGTGAGAGTCCGTGC--A-AA-A-ATGAA-TAG-CTA-CCGGGTCGTC-AGTC-TTCCTTCTAATAAGTGACAAAATT-TAACACATGCCTCTGAT----A-TAAAGTAGCACCA-G-TTTCTC-CCACA--T-A--T-ACG-A-----ATTT-----------TTATT-TGCA--TTTTTTTGC-AGAACA-CT--CCATAAA-CT---A-CGTTACTGGA---TACA-A-TT-A-A-TGT---A-TTTTTA--ATATGA-T-AT--T-TGT-TGCC-GTT-ACA-ATC-CT-CG-AAT--TGG--TTAGT-----TTT-TATGAC-ATA-TTGACATAANATGCNAAT-TTTTTA-GC----A-CCACA--C-GGC--TCGCACAAG-TTT----TCT-TTTCTTTAAAAAA-----TAGA-TTATTATGTTTCTTATGTACCAAGATGTT-TTTTAAATTTGTNTGATTCT-T-CTGAAAAGCTACT-ATGGGCA
5 sequences could not be aligned to this reference sequence:
Unaligned ( gi|17 ): TTTTTTTATTGAATAAATTCTTTTATATGTACCAAAATGCCTCTCTTCCGAAATGCTACATGTAATATGGGCGTATTTCTAAAAGCCTTCTTGGAGTGGTCAAAGTTCTCAAATTTTTTTTTTTTTTGAATATTGGAAAGTCCATTGGAAAGTCCTTTATATCAGAAAAGGAACGCGATTACACCGTTTCGTCTTTTTACTGTAGTT
Unaligned ( gi|20 ): TCTTTTATAGTTACCAAAATGCCTCTTCTTCCGAAATGCTACATGTTAATATGGGCGTATTTTTAAAAGCCTTCTTGGACGTGGTCAAAGTTCTCAAAATTTTTTTTTTTGAATATTGGAAAGTCCATTGGAAAGTCCTTTATATCAGAAAAGGAACGCGATTACACCGTTTCGTCTTTTTACTCGTAGTTACA
Unaligned ( gi|33 ): AGACGTAATCTGAACCACTATACTAATTTAAAATTTATGTGGCATTTAAGAGTGGTTTATATTNATGATT
Unaligned ( gi|34 ): ATATATTACAAAGTCTCTTTCATCGGCAAGTTAAAATTAAAAAAAAATAACTCTAAACACTTTCTT
Unaligned ( gi|36 ): ATATATAAAGTCTCTTTCATAGGAGTAAAATTAAAAAACTCTGAACACTTTATT
Alignments
lowQualScore : 1111 11111111111 111 111111 11111 5555555555555555555555555555 22222222222222 1111 333333333333 1111111 2222222222222222222 111 11 22222222222222 222222222222 11 111 111111111 1111 11 1 1 111 1 3333333 1111 2222222222 1111111 222222 2222 1 111111 1 11 1111 1111 1111 22222 11 1
lowQualScore : 2 2 2 2 33 4 2 2 2 4444 2 1111 2 2 2 444 2 2 33 666 2 2 66 2 444 555 33 5 2 2 2 5 33 33333333333 33 5 2 2 33 44 3 3 3 4 4 4 4 66 9999 4 4 4 4 4 66 4 66 777 4 222 4 4 66 555555 5 999999 22222 5 99 6666666666666666666666666666 77 1 88888888888888 4444 5 5 3 5 5 4 3 99 000000000000 0000000 9999999999999999999 5 4 4 000 77 77 5 5 66666666666666 5 5 66 444444444444 5 11 888 333 66 333333333 1 5 66 66 0000 4 1 55 4 55 4 4 55 66 4 4 55 4 11 666 5 0 55555 4 4 4 7 4 66 66 6 555 66 4 4 4 4 4 4 4 4 2 3 5 99999 4 2 4 4 1 4 66 4 66 4 4 3333333 5555 5555555555 4 4444444 4 2 8 66 4 777 4 3 1 1 666666 5 5 5 5 5 4444 66 0 5 66 5 5 2 5 5 5 5 5 5 66 66 444444 5 5 5 0 5 5 88 3 5 0000 5 1111 66 1 2 77 2222 5 66 66666 6 1 3 6 3 2 1 66 6 6 6 7 0
lowQualScore : . . . . .. . . . . .... . .... . . . ... . . .. ... . . .. . ... ... .. . . . . . .. ........... .. . . . .. .. . . . . . . . .. .... . . . . . .. . .. ... . ... . . .. ...... . ...... ..... . .. ............................ .. . .............. .... . . . . . . . .. ............ ....... ................... . . . ... .. .. . . .............. . . .. ............ . .. ... ... .. ......... . . .. .. .... . . .. . .. . . .. .. . . .. . .. ... . . ..... . . . . . .. .. . ... .. . . . . . . . . . . . ..... . . . . . . .. . .. . . ....... .... .......... . ....... . . . .. . ... . . . . ...... . . . . . .... .. . . .. . . . . . . . . . .. .. ...... . . . . . . .. . . .... . .... .. . . .. .... . .. ..... . . . . . . . .. . . . . .
lowQualScore : 9 5 4 2 11 4 2 1 1 5555 1 1111 5 5 5 444 5 5 77 999 7 7 88 9 555 111 99 7 9 9 9 7 99 99999999999 77 7 9 9 99 66 6 6 6 0 0 0 4 11 4444 4 4 4 4 4 11 4 11 888 4 222 4 4 11 222222 1 999999 55555 7 22 7777777777777777777777777777 99 7 11111111111111 2222 7 0 1 0 0 0 2 55 222222222222 7777777 4444444444444444444 4 4 4 000 77 99 7 7 00000000000000 7 7 99 000000000000 0 99 888 999 99 666666666 4 0 99 99 6666 4 0 00 0 55 0 0 55 11 4 4 55 0 00 333 7 6 99999 0 0 0 8 4 11 11 5 777 11 4 4 4 4 4 4 4 4 4 4 0 66666 4 9 4 4 9 4 11 4 11 4 4 7777777 6666 0000000000 4 4444444 4 9 0 11 4 888 4 7 9 4 444444 0 0 0 0 0 0000 99 0 0 99 0 0 5 0 0 0 0 0 0 99 99 666666 0 0 0 4 9 0 88 2 0 6666 0 9999 99 3 3 11 1111 7 00 44444 7 0 7 7 5 5 0 88 7 7 7 3 0
consensus : TCTA-AACACTTTC-TT-GAA-ATATT--TCGA-C-CGCGT-TAC-CG----G-TCTT----CATCAGT-C-G-T---GTTT-A-TT--T---TCCG-TAGC-AA--C-ACAAC--GCACG-A--CTA-C-ACA-CA-T-TAG--AGTA--------C--T--GTG-A-CG-TCAC--AG--T-GGA-TA-TTA-AG-TT-GAAC-AA--TAA----CG-TCA-CAG-TTGAAA-TT-ACGCG--CAAAA-CA--TTT---G-AAAA---TAG-T-AAG--AGTC-T----ATGAAATTAACAA---T--AGC-----TAAGTTAGCCGC-GTCGGC--AT------------AT--------------AAGCG--TAGAATGAAATA------T-------GTAAGTAAT----GGTA-CAAAATA-TAGGGAAATT-ACGAACACAT-AGCAGTTG-ACTACT--GACCTAC-GT------CAA----AA-ATGCTTTCC--AAA--------ATATGC-CAT-TAGTAATT---AAA-TTA--TACA-TGTA-CA----------T---ACATAATTATACAAT-ATAAA-AAGAGTTA--T-------A----C-AACAAT--T---TT--TC--TA--TAT----TCTCTGTTTACA-TGTT--AAGA--CG----CA-TTTTTAAAG--ACAGAAATGTT-CCCGTTTGTTTA--TTCCGA-A-T--G--GT-GCGTAAGTG-TTCAATTTTTT--C-TTC--CATAGGT-TTTCTCTAAAATCGACGATAAATG--T--C-ATCTTTG-TAAAGC-TTTTCCAT-CC-T--ATTATAG--AATAATCACTTATAA-TTGTGAGAGTCCGTGC--A-AA-A-ATGAA-TAG-CTA-CCGGGTCGTC-AGTC-TTCCTTCTAATAAGTGACAAAATT-TAACACATGCCTCTGAT----A-TAAAGTAGCACCA-G-TTTCTC-CCACA--T-A--T-ACG-A-----ATTT----TTA-TTTGCA--TTT-TTTTG-------C-AGAACA-CT--CCATAAA-CT---A-CGTTACTGGA-T-T--ACA-A-TT-A-A-TG-T--ATTTTTA--ATATGA-T-AT--T-TGT-TGCC-GTT-ACA-ATC-CT-CG-AAT--TGG--TTAG----T-TTT-TATGAC-ATA-TTGACATAANAT-GCAAACTTTTTA-GC----A-CCACA--C-GGC--TCGCACAAG-TTT----TCT-TTTCTTTAAAAAA-----TAGA-TTATTATGTTTCTTATGTACCAAGATGTT-TTTTAAATTTGTNTGATTCT-T-CTGAAAAGCTACT-ATGGGCA
Reference ( family-737 ) : TCTA-AACACTTTC-TT-GAA-ATATT--TCGA-C-CGCGT-TAC-CG----G-TCTT----CATCAGT-C-G-T---GTTT-A-TT--T---TCCG-TAGC-AA--C-ACAAC--GCACG-A--CTA-C-ACA-CA-T-TAG--AGTA--------C--T--GTG-A-CG-TCAC--AG--T-GGA-TA-TTA-AG-TT-GAAC-AA--TAA----CG-TCA-CAG-TTGAAA-TT-ACGCG--CAAAA-CA--TTT---G-AAAA---TAG-T-AAG--AGTC-T----ATGAAATTAACAA---T--AGC-----TAAGTTAGCCGC-GTCGGC--AT------------AT--------------AAGCG--TAGAATGAAATA------T-------GTAAGTAAT----GGTA-CAAAATA-TAGGGAAATT-ACGAACACAT-AGCAGTTG-ACTACT--GACCTGC-GT------CAA----AA-ATGCTTTCC--AAA--------ATATGC-CAT-TAGTAATT---AAA-TTA--TACA-TGTA-CA----------T---ACATAATTATACAAT-ATAAA-AAGAGTTA--T-------A----C-AACAAT--T---TT--TC--TA--TAT----TCTCTGTTTACA-TGTT--AAGA--CG----CA-TTTTTAAAG--ACAGAAATGTT-CCCGTTTGTTTA--TTCCGA-A-T--G--GT-GCGTAAGTG-TTCAATTTTTT--C-TTC--CATAGGT-TTTCTCTAAAATCGACGATAAATG--T--C-ATCTTTG-TAAAGC-TTTTCCAT-CC-T--ATTATAG--AATAATCACTTATAA-TTGTGAGAGTCCGTGC--A-AA-A-ATGAA-TAG-CTA-CCGGGTCGTC-AGTC-TTCCTTCTAATAAGTGACAAAATT-TAACACATGCCTCTGAT----A-TAAAGTAGCACCA-G-TTTCTC-CCACA--T-A--T-ACG-A-----ATTT----TTA-TTTGCA--TTT-TTTTG-------C-AGAACA-CT--CCATAAA-CT---A-CGTTACTGGA---T--ACA-A-TT-A-A-TG-T--ATTTTTA--ATATGA-T-AT--T-TGT-TGCC-GTT-ACA-ATC-CT-CG-AAT--TGG--TTAG----T-TTT-TATGAC-ATA-TTGACATAANAT-GCNAATTTTTTA-GC----A-CCACA--C-GGC--TCGCACAAG-TTT----TCT-TTTCTTTAAAAAA-----TAGA-TTATTATGTTTCTTATGTACCAAGATGTT-TTTTAAATTTGTNTGATTCT-T-CTGAAAAGCTACT-ATGGGCA
gi|1 : TCTATAACACTTTC-TT-GAAGATATT--TCGA-CACGCGT-TACTCT----G-TCTT----CATCAGT-C-G-T---GTTTTA-TT--T---TCCG--AGC-AA--CCACAAC--GCACA-AAACTA-C-ACA-AT-T-TAG--AGTA--------C--T--ATGGA-CGGTCAC--AG--T-GGAGTA-T-A-AG-TT-GAAC-AA--TAA----CG-TAAACAG-TTGAAA-T--ACGCG--CAAAAACA--TGT---G-AAAAA--TAG-T-AAG--AGTC-T----ATGAA-TTAACTA---A--AGC-----TATGTTAGCCGCCGTCGGG--AT------------A---------------AAGCGCTTAGAATGAAATA------CATACGTAGTAAGTAATTTGTAGCA-AAAAATA-TAGGGAAATTTACGAACACATCAGCAGTTG-ACTACT--AGCCTAT-G---------A----TA-ATA-TTTAC--AAACATGAACAGTATAC-CAT-TAGTAATT---AA--TTA--TACA-AGTA-CA----------T---ACATAATTATACAATTATAAA-AAGAGTTA--CTGGCAAAA----C-AATAATAAT---ATAACA--CA--TATAATATATATATTTACA-TGTT--AAGA--CG----CA-TGTT-AAAG--ACAGAAATGTT-CC-GTT-GTTTA--T-CCGA-A-T--GTGGT-GCGTAAGTGATTCAATTTTTT--C-TTC--CATAG---TTTCTCTAAA-TCGACGATAAATG--T--C-AC---TG-TTAAGC-TTTTCCAT-CC-CTAATTATAG--AATAATCACTTATA--TTGTGAGAGTCCGTGCCTATGA-A-ATGAAATAGACTA-CCGGGTCGTC-AGTCATTCCTTCTAATA-GTGACAAA-TT-AAACACATGCCTCTGAT----A-TAAAGTAGCAC-A-G-TTTCTC-CCACA--T-A--TTACG-A-------TT----TTA-TT-GC---TTT-TTTTG-------C-AGGACA-CT--CCATAAAACT---A-CATTACTGGA---TTAACA-AGTTGA-A-TA-TTAATTTTTA--ATATGA-T-ATCTT-TGT-TGCC-GTTTACA-ATC-CTGCGGAAT--TGGAGTTAGATTGT-TTT-TATGACCATAGTTGACATA-TAT-GC--ACTTTTTA-GCCCAAA-CCACA--T-GGC--TCGCACAAG-TTT----TCT-TTT-TTTAAAAAA-----TAGA-TTATTATGTTTCTTATGTACAAGAATGTC-TTTTAAAT---TCTTATTCTCT-CTG-AAAGCTACTGATGG
gi|1 : aaagtctctttcatcggagtaaaatttgaaacccacaaac-ACT-CT--GACC-GC-CT------CAA----AA-ATGCTTTCC--AAAC-------ATATGC-CAT-CAGTAcatatgtttggaaagcatttttgaggcggtcagagtttctcaagaattttttgtcgatttttaaaattttatgaatattggaagtcctttagaatagtttacgtacaagggaccgatt
gi|10 : aaagtctctttcatcggagtaaaatttgaaacccacaaactctataacactttcttgaagatatttcgacacgcgttactctgtcttcatcagtcgtgttttattttccgagcaaccacaacgcacaaaactacacaatttagagtactatggacggtcacagtggagtataagttgaacaataacgtaaacagttgaaatacgcgcaaaaacatgtgaaaaatagtaagagtctatgaattaactaaagctatgttagccgccgtcgggataaagcgcttagaatgaaatacatacgtagtaagtaatttgtagcaaaaaatatagggaaatttacgaacacatcagcagttgactactagcctatgataatatttacaaacatgaacagtataccattagtaattaattatacaagtacatacataattatacaattataaaaagagttactggcaaaacaataataatataacacatataatatatatatttacatgttaagacgcatgttaaagacagaaatgttccgttgtttatccgaatgtggtgcgtaagtgattcaattttttcttccatagtttctctaaatcgacgataaatgtcactgttaagcttttccatccctaattatagaataatcacttatattgtgagagtccgtgcctatgaaatgaaatagactaccgggtcgtcagtcattccttctaatagtgacaaattaaacacatgcctctgatataaagtagcacagtttctcccacatattacgattttattgctttttttgcaggacactccataaaactacattactggattaacaagttgaatattaatttttaatatgatatctttgttgccgtttacaatcctgcggaattggagttagattgtttttatgaccatagttgacatatatgcactttttagcccaaaccacatggctcgcacaagttttctttttttaaaaaatagattattatgtttcttatgtacaagaatgtcttttaaattcttattctctctgaaagcGAGAGTCTGAGT--A-CA-A-ATGAA-TTG-CTA-CCGGGTCACC-AATT-TTCCTTCTAATAAGTG--------------------TC--------A-TCAAGTTGCCCCA-G-TT-----CCACACTT-A--T-GCA-ATTCATATTTAT--TTA-TTTTGA--ATT-TATTA-------C-A-AACAATT--CCATAAA-AT---A-CGTT--T-------------A-TT-A-A-TA-TA-ATTTTTG--ATATGA-T-AT--T-TGT-TGCC-GTC-ACA-ATC-CT-AG-AAT--TGG--TTAC----T-TTT-AATAAT-ATA-TTGACATAAAAT-GCAAATATT----GC----A-CCACA--C-AGC--TTGCCCAGG-TTT----TCT-TTTCTAAAAAAAAAAAC-CAGA-TTAGAATGTTTCTTGTGTACATAAATGTT-TTTTGATTTTGTGTGATT-T-T-TTGAAAttctcaagaattttttgtcgatttttaaaattttatgaatattggaagtcctttagaatagtttacgtacaagggaccgatt
gi|11 : ----A-TAAAGCC-CATCAAG-TT-----CCACA--T-A--T--CGCA-----ATTTCATATTA-TT---A--TTTATTTTGAATTATTC-A-AACA-ATTCCCATAAA-AT---ATCGTT-------------TA-A-TT-ATA-TA----ATTTTTG--ATATGAAT-AT--T-TGT-TGCCGGTC-ACA-ATC-CT-AG-AAT--TGG--TTA-----C-TTT-TATAAT-ATA-TTGACATAAAAT-GCAAATATT----GC----A-CCACA--CAAGC--TTGCCCAGG--TT----TCT-TTTCTAAAAAAAAAAACCAAGA-TTAGAATGTTTCTTGTGTACTAA-ATGTT-TTTTGATTTTGTGTGATT-T-T-TTGAAA
gi|12 : A-TTTTCAACG--GCAAATATGTT-CCCGTTTGTTTA--GTCCAA-A-C--G--AC-ACATA--------------TT--C-TTC--CTTAGAT-TTTCTTTAAAA-CGACGATAAAT--------ATCTTTG-TCAAG--TTTTCCATACA-T--ATTATAG--AAAAATTGTTTATA-----CGAGAATCTGTGT--A-GA-A-ATGAA-TAG-CTA-CAACGTCATT-AGTC-TCTCTTCTTATAAGTGAC-AAATT-CAACGCGTGCCTTTGAT----A-cctgagaactgtaaattttttggaa
gi|13 : cagtagttaattgtatatacatcaatactaacatggtaaaatcagtttatacaatttgaaaaaaaacacacatgcagaactttTCTA-AACACTTTC-TTTGAA-ATATT--TCGACC-CGCG--TAC-CG----G-TCTT----CATCAGT-C-GTT---GTTT-A-TT--TTTATCCG-TAGCAAA--C-AC-AC--CCACA-A--CT--C-ACA-CA-T-TAGTAAGTA--------CTTT--ATG-A-CG-TCACAAAG--T-GGA-TATTTA-AG--T-GAAC-AAATTAATTACCGTTCA-CAG-TTGAAA-TTAACGCGGACAAAA-CA--TTTAGGA-AAAA---TAG-T-AAAGTAGTC-G----ATG-AATTAACAAAGCT--AGCCTAATTAAGTTAGCCGC-GGCG
gi|14 : taaaattttttaaaaaaaaaaaaataaaaaaaaccgtctaccacTA-GACACTTTC-TT-GAA-GTATT--TTGA-C-TTTGG-TAT-CG----T-TCTT----CCTCAGT-C-A-T---GTTT-A-TT--T---T-----------------AAA--GCAAG-A--CTA-C-ATA-CA-T-AAG--ATTACTGACTAGC--T--GTG-A-CA-TCAC--AA--T-GGG-TA-TTACAT-TT-GATC-AG--TAA----CA-TCA-CAG-TTGAAA-TT-ACATG--CAAAA-CA--ATT---G-AAAAAGGTAATT-AAG--AGTC-TCATAATGAAATTAACAA---T--GGC-----T
gi|15 : gacaaattctttaatttgaaatatatgtatttacaaatgtacatataTAATT---AA--TTAAGTACACTGTA-C-----------T---ACATAAT-ATACAAT-ATAAA-AATAGTTA--T-------A----C-AACA-T--T---TT--CC--TA--T-T----TCTCTGTTTACA-TGTT--AAGA--CG----CA-TTTTTAAAGGGACAAAAAATTT-CCCGTTTGTTTA--TTCCGA-A-T--G--GT-GTGTAAGTG-TTCAA-TTTTT--C-TTCCTCATAGGTACTTCTCTAAAATCGACGATAAATG--TTCC-ATCTTTGTTAAAGC-TTTTCCAC-CC-T--ATTATAG--GA
gi|16 : GAGAGTCCGTGC--A-AA-A-ATGAA-TAG-CTA-CCAGGTCGTC-AGTT-TTCCTTCTAATAAa
gi|16 : AACAACT--CCATA---CT---A-CGTTACTGAA---T--ACATA-TT-A-A-TG-T--A-ATTTA--ATATGA-T--T--T-TGTGTTCT-TTT-ACACACT-TT-CG-AAT--TGG--TTAG----T-TTT-TATG-C-ATA-TTGAC-TAA-ATGGCACGTTTTTTAGGC----ACCCACA--T-GGC--TCGCCTA----TT----TCT-GTAGTTTAGGAGA-----Tcaactccatactacgttactgaatacatattaatgtaatttaatatgattttgtgttcttttacacactttcgaattggttagtttttatgcatattgactaaatggcacgttttttaggcacccacatggctcgcctatttctgtagtttaggagat
gi|18 : gagagtccgtgcaaaaatgaatagctaccaggtcgtcagttttccttctaatTA-AACACTTTCCTT-GAA-A-ATT--TCGAAC-CGCGT-TAC-CG----GGTCTT----CATCAGT-C-G-T---GTTT---TT--T---TCCGCTAGC-AAA-C-ACAAC--GCAC--A--CTA-C-ACA-CA-T-TAG--AGTA-----------T--ATGCA-CG-TCAC--AGGGT-GGA-TA-TTA-AG-TT-GAAC-AA--TAA----CG-TCA-CTG-TTG-AA-TT-ACGTG---GAAA-CA--TTT---G-AAAA---TAG-T--AG--AATC-
gi|19 : actctG--ACAGAAGTGTT-CCCGCTTGTTTA--TTCCGA-A-T--G--GT-GCGTAAGTG-TTCAATTGTTT--C-TTC--CATAGGT-TTTCTCTAAA-TCGACGATAAATG--T--C-ATCTTTG-TAAAGC-TTTTCCATCCC-T--ATTATAG--AATAATCACTTAT-A-TTGTGAGAGTCCGTGC--A-AA-A-ATGAA-TAG-CTA-CCAGGTCGTC-AGTT-TTCCTTCTAATAAgacaatagt
gi|2 : TCTA-AACACTTTC-TT-GAA-ATATT--TCGA-C-CGCGT-TAC-CG----G-TCTT----CATCAGT-C-G-T---GTTT-A-TT--T---TCCG-TAGC-AA--C-ACAAC--GCACA-A--CTA-C-ACA-CA-T-TAG--AGTA--------C--T--ATG-A-CG-TCAC--AG--T-GGA-TA-TTA-AG-TT-GAAC-AA--TAA----CG-TCA-CAG-TTGAAA-TT-ACGCG--CAAAA-CA--TTT---G-AAAA---TAG-T-AAG--AGTC-T----ATG-AATTAACAA---T--AGC-----TATGTTAGCCGC-GTCGGC--AT------------AT--------------AAGCG--TAGAATGAAATACATACGT-------GTAAGTAAT----GGTA-CAAAATA-TAGGGAAATT-ACGAACACTG-ATTCG-TA-AC-ACT--GACC-GC-CT------CAA----AA-ATGCTTTCC--AAA--------ATAT-C-CATCTAGTAATT---AAA-TTA--TACA-TGTATCA----------T---ACAT-ATTAT----T-ACAGATAAGAGTTA--T-------A----C-AACAAT--T---TT--TC--TA--GAT----ATTCTAATTAAA-TGTT--AAGA--CG----CA-TTTTTAAAG--ACAGAAATGTT-CCCGTTTGTTTT--ATGTGA-ATT--A--TT-CCGTAAGTG--TCAATTTTTTTCT-TTC--CATAGG--TTTCTCTAAAATCGACGATAAATG--T--CGATCTTTG-TACAGC-TTTTCC-T-CC-T--ATTATAG--AA-AATCACTTATAA-TTGTGAGAGTCCGTGC--A-AACACATGAA-TAG-CTATCCGGGTCGTCAAGTC-TTCCTTCTAATAAGTGACAAAATT-TAACACATGCTTCTGATGAGGG-TAAAGTAGCACCA-G-TTTCTC-CCACA--TAA--T-ACG-A-----ATTT----TTATTTTGCAATTTT-TTTTG-------C-AGAACA-CT---CAT-AA-CT---A-CATTACTGCAATTT--ACA-A-TT-A-A-TG-T--ATTTTAA--ATATGATT-AT--TGTGT-T-TC-GTT-ATA-ATC-CT-CG-AAT--TGG--TTAG----TATTTGTATGAC-ATA--TGACATAATAT-GTCGACTATTTA-GC----A-C--CA--C-GGC--TCGCACAAGTTTT----TCTGTTTCTTTAAAAAA-----TAGA-TTCTTGTGTTCCTTATGTGCCAAGATGTT-CTTTAAA-TTGTAC--TTCT-T-CTGAAAAGCTACT-ATGGGCA
gi|21 : -CAAGACA-GAGGGGAAGT-ATGAACACAC-AGCAGTTG-ACTCCT--GACCTAT-GT------
gi|22 : --T--GTG-A-TG-TCAC--AA--T-GAA-TA-TTA-AC-TT-TATC-AG--TAA----CA-CCA-TAG-TTGAAA-TT-ACGTG--CAAGG-CA--TTT---G-TAAA---AAG-T-AAG--AATC-T----ATGAAATTAACAA---TACAGC-----TTACCTACCCCC-CTCGACAAATCCCCAAGAAGGAAT--------------AAGCG--TAGAATAAAATA------T-------ATAAGTAAgtgacggtcatgatgaacggtgatgtgcgaagaaacagtgataaattaacctaatcacctaacatagagtggtagacgtaatttgaaccattatgataattataatattgatgtggcatttaa
gi|23 : A-AACACTTTT-CT-GAA-ATATTTCTCGA-C-C-CGTATAC-CGGGTCG-TTGT----CATCAGT-CAG-TTTGATTT-A-TTAAT---CCCG-TAGC-GA----ACAA---ACA-G-A--CGG-A-ACA-AA-T-TAT--A-TA--------C--T--
gi|24 : aaactcTA-AACACT--------GA-ATATT--TTGA-C-CACAT-TAC-CA----G-CCCTA---CCTTAGTCC-G-T---GTTT-A-TT--TA--TAC--TAGC-Aaaacacatcaattatgtagttttgactatgaaacgtca
gi|25 : atattataatttatgaaaaagtctcttatatccaagaaaaatgtaaaaagctctaaagctaTA-AACACTTTC-TT-AAA-ATATT--TCAA-C-CG--------------G-TCTT----CATCAGT-T-G-T---GTTT-A-TT--T---TCCG-TAGC-AA--A-ACAAC--GCACG-G--TTA-C-ATA-CA-T-AAG--AGTA--------C--T--GTG-A-CA-TCAC--AA--T-GGA-AA-GTA-AG-TT-tatcataaatgcaat
gi|26 : taaaaactgggaacctgTCCTAATAAGTGACAAAATTCTAACACATGCCTCTGA-----A-TAAAGTAGCACCA-GTTTTCTC-CCACA--T-A--T-AC--A-----ATTT----TTA--TTGCA------TTTTG-------CAAGAACA-CT--CCATAAA-CT---A-C-TTAATGatgca
gi|27 : TTA--T-------AATTGC-AACAATA-T---TT--TCAATAAATAT----TATTTGTT-ACA-TGTTTTAAGAATCGATATTA-TTTTAAAAG--ACAG-AATGTTCCCCGTTTGAT----TTTCGA-A-T--taa
gi|28 : agagttaatT--------------ACGCG--TTGAATCAAA-A------T-------ATAAGTAAT----CTTA-CAAGATA-GAGGAAAAGT-ATGAACACAC-AGCAGTTG-ACT
gi|29 : tttttggataattattctttggtttaacgatTTC-TC-TAA-ATATT--TCAC-C-CATGT-TAC-CA----A-CCTTCCTGCATCAG----------GTTC-A--T--T---GCTA-TAGC-AA--C-AAACC--ACATG-A--CCAGC-ATA-CA-TCTTG--AA-A--------T--C--GTG-A-CA-TCAC--Attgaacca
gi|3 : ATA-TAGGGAAATT-ACGAACACAT-AGCAATTG-ACTACT--GACCTAT-GTGATTTACAA----AC-ATG---------AA--------ATATTA-CAT-TAGTAATTTTAAAA-TTG--TACA-TGTA-CAATGCAGTACAT---ACATAATTATACAAT-ATAAA-AATAGTTAAAT-------A----C-AACAAT--T---TT---C--TA--TAT----TCTCTGTTTACA-TGGT--AAGA--TG----CA-TTTTTAAGG--ACAAAAATGTT-CCCGTTTGTTTA--TTCCGA-A-TCGG--GT-GTGTAAGTG-TTCAATTTTTT--C-TTC--CATAGGT-TTTCTCTAAA-TTGACGATAAATG--T--C-TTCTTTG-TAAAGC-TTTTCCAT-CCTT--ATTATAT--AATAATCACTTA-AA-TTGTGAGAGTCCGTGC--A-AA-A-ATGAA-TAG-CTA-CCGGGTCGTC-AGTC-TTCCTTCTAATAAGTGAC-AAATT-TAACACATGCCTCTGAT----A-TAAAGTAGCACCA-G-TTTCTC-CCACA--T-A--T-ACA-A-------TT----TTA--TTGCA---TT-TTTTG-------C-AGAACA-CT--CCATAAA-CT---A-CATTACTGGATT-T--GCA-A-TT-A-A-TGTT--GTTTTTAATATATGA-T-AT--T-TGT-TGCC-GTT-ACA-ATC-CT-CG-AAT--TGG--TTAG----T-TTT-TATGAC-ATATTTGACATAATAT-GCA---TTTTTA-GC----A-CCACA--T-GGC--TCGCACAAG-TTT----TCT-TT--TTTAAAAAA-----TAGA-TTATTATGTTTCTTATGTACCAAGATGCT-TTTAAAATTCTTAT--CTCT-T-CTG-AAAGCTACT-ATGGGCA
gi|3 : -ACT-CT--GACC-GC-CT------CAA----AA-ATGCTTTCCAAAAA--------ATATGC-CCA-TAGTAtattttttggaaagcatttttgaggcggtcagagttctcaagaattttttgtcgattttttaaaaattttatgaattttggaaagtcctttagaatagttt
gi|30 : atatagggaaattacgaacacatagcaattgactactgacctatgtgatttacaaacatgaaatattacattagtaattttaaaattgtacatgtacaatgcagtacatacataattatacaatataaaaatagttaaatacaacaattttctatattctctgtttacatggtaagatgcatttttaaggacaaaaatgttcccgtttgtttattccgaatcgggtgtgtaagtgttcaattttttcttccataggttttctctaaattgacgataaatgtcttctttgtaaagcttttccatccttattatataataatcacttaaattgtgagagtccgtgcaaaaatgaatagctaccgggtcgtcagtcttccttctaataagtgacaaatttaacacatgcctctgatataaagtagcaccagtttctcccacatatacaattttattgcattttttgcagaacactccataaactacattactggatttgcaattaatgttgtttttaatatatgatatttgttgccgttacaatcctcgaattggttagtttttatgacatatttgacataatatgcatttttagcaccacatggctcgcacaagttttcttttttaaaaaatagattattatgtttcttatgtaccaagatgcttttaaaattcttatctcttctgaaagcTTC-TC-TAA-ATATT--TCAC-C-CATGT-TAC-CA----A-CCTTCCTGCATCAG----------GTTC-A--T--T---GCTA-TAGC-AA--C-AAACC--ACATG-A--CCAGC-ATA-CA-TCTTG--AA-A--------T--C--GTG-A-CA-TCAC--Atctcaagaattttttgtcgattttttaaaaattttatgaattttggaaagtcctttagaatagttt
gi|31 : TCTA-AACACTCTC-TT-GAA-ATATT--TCGA-C-CGTAT-TAC-CA----G-TTTT----CCTCAGT-C-G-T---GTTT-A-TT--T---TC
gi|32 : cagtcttttttatcggagtaaaatttaaaaaaaacaacAA-ATATT--T--A-C-CGCAT-TAC-CA----G-TTTT----CCTCAAT-C-G-T---GTTT-A-T
gi|35 : aaaaaaccaaaacctctagattagactaaaatactgaAAAGTCACATCA-C-ATTTTC-CCACA--T-AAAT-ACG-A-------TT----CTA-TT-G-A--TTT-TTTTG-------C-AAAACA-
gi|37 : ---TCTG-TAGC-AA--C-ACGAC--TCACG-A--CCA-C-ATA-C--C-TAG--AGTA--------T--T--GTG-A-CG-TCAC--AG--
gi|38 : CCA-AACACTTTC-TT-GAA-CTATG--TTGA-C-CGCAT-TTC-CG----G-TGTT----gg
gi|39 : aacgTCTA-AACACTTTC-TT-GAA--TATT--TCGA-C-CGCGT-TAC-CG----G-TCCT----
gi|4 : cccTCAATTTTTT--C-TTC--CATAGGT-TT-CTCTAAA-TCGACGATAAATG--T--C-ATCTTTG-TACAGCATGTTACCT-CC-C---TTATAG--AATAAT-ACTTATAATTTGTGAGAGTCCGTGC--A-AA-A-ATGAA-TAG-CTA-CCGGGTCGTC-AGTC-TTCCTTCTAATAAGTGACAAATTT-TAACACATGCCTCT-AT----ATTAAAGTA-CACCA-G--TTCTCTCCACA--T-A--T-ACG-A-------TT----TTA-TTTGC---TTT-TTTTG-------C-AGAAAA-CT--CCATTAA-CTTACA-CTTTACTGGATT-T--ACA-A-TT-A-ATTG-TA-ATTTTTA--AT-TGA-TAAT--T-TGT-TGCC-GTT-ACA-ATC-CT-C--AATGGTGG--TTAG------TTT-TATAAC-ATATTTGACTTAAT-T-AGCATTTTTTTA-GC----A-CCACATTT-GGCTTTCGCACAAG-TTTTTTCTTT-TTTCTTT-AAAAA-----TAGATTTATTGTGTTTCTTATGTACCAAGATGTTCTTTTAAAATTTTCTATCTCT-TGCTGATAAGCTACT-ATGGGC
gi|4 : ACTC-GACC-GCTGT------CAA----AAAATGCTTTCC---AA--------ATAAGC-CCA-TAGTAttatttggaaagcattttttgacagcggtcgagtttcaagaatttttatttgtcgattttgttaaaattttcattgaatattgggaaagtcctttagaatagtttactacaaggggaacacgattattttaccgctttctctttttctgtagtta
gi|40 : tcaattttttcttccataggtttctctaaatcgacgataaatgtcatctttgtacagcatgttacctcccttatagaataatacttataatttgtgagagtccgtgcaaaaatgaatagctaccgggtcgtcagtcttccttctaataagtgacaaattttaacacatgcctctatattaaagtacaccagttctctccacatatacgattttatttgctttttttgcagaaaactccattaacttacactttactggatttacaattaattgtaatttttaattgataatttgttgccgttacaatcctcaatggtggttagttttataacatatttgacttaattagcatttttttagcaccacatttggctttcgcacaagttttttcttttttctttaaaaatagatttattgtgtttcttatgtaccaagatgttcttttaaaattttctatctcttgctgataagcTCTA-AACACTTTC-TT-GAA-ATATT--TCGA-C-TGCGT-TAC-CG----G-TCTT----ttcaagaatttttatttgtcgattttgttaaaattttcattgaatattgggaaagtcctttagaatagtttactacaaggggaacacgattattttaccgctttctctttttctgtagtta
gi|5 : acTCTA-AACACTTTC-TT-GAA-ATATT--TCGA-C-CGCGT--AC-CG----G-TCTT----CATAAGT-C-G-T---GTTT-A-TT--T---TCCG-TAGC-AAAAC-ACAACACGCACATA--CTA-C-ACAACACT-TAG--AGTAA-------C--TAAGTG-AACG-TCAC--AG--T-GGA-TT-TTA-AG-TTTGAACCAA--TAA----CG-TCA-CAA-TTGAAA-TT-ACGCG--CAAAA-CA--TTT---G-AAAA---TAG-T-AAG--AGTC------ATTGAATTAACAA---T---GC-----TAAGTTAGCCGC-GTCGGC--AT------------AT---------------AGCG--T-GAATGAAATA------T-------ATAAGTAAT----GGTACCAAAATA-TAGGGAAATT-ACGAACACAT-AGCAGTTGAACTACTGAGACCTAT-GTGAATTACAA----AC-ATG--------AAA--------ATATACAAAT-TAGTAATT---AAAGTTA--TACA-TGTA-CA----------TATAACATAATTA-ACAAT-ATAAA-AAGAGTTA--T--------------AACAAT--TCTATT--TC--TA---------GCTATGTTTACA-TGTT--AAGA--CG----CATTTTTTAAAG--ACAGAAATGTT-CCCGGTTGTTTAATTTCCGACA-T--G--GTGGCGTAAGTG-TTCAATTTTTT--CTTTC--CATAG---TTTCTCT-AAATCGACGATAAAAGATC--C-ATCTTTG-TACAGC-TTTT-CATCCC-T--ATTATAGTAAATAATCACT
gi|6 : aaagtctctttatcggagtaaaattaaaaaaaaaacCGC-TAC-CG----G-TCTT----CATCAGT-C-G-T---GTTT-A-TT--T---TTCT-TAGC-AA--C-A----------G-A----------A-CA-T-TAG--AGTA--------C--T--ATG-A-CG-TCAC--AG--T-GGA-TA-aag
gi|6 : tcttgagtatgtccggcgtacatcgtt--------ATATAC-CAA-TATTAACT---AA--TTG--TACA-TGTA-CA----------T---ACATAATTATACAAT-ATAAA-AAGAGTTA--T-------A----C-AACAAT--T---TT---C--TA--TAT----TCTCTGTTTACA-TGTT--AAGA--CG----CA-TTTTTAAAG--ACAGAAATGTT-CCCGTTTGTTTA--TTCCGA-A-T--G--GT-GCGTAAGTG-TTC-ATTTTTT--T-TTCTTCATAGGT-TTTCTCT-AAATCGATGATAAACG--T--C-TTCTTTG-TAAAAC-Tnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncatataccaatattaactaattgtacatgtacatacataattatacaatataaaaagagttatacaacaattttctatattctctgtttacatgttaagacgcatttttaaagacagaaatgttcccgtttgtttattccgaatggtgcgtaagtgttcatttttttttcttcataggttttctctaaatcgatgataaacgtcttctttgtaaaact
gi|7 : tcttgagtatgtccggcgtacatcgttcgctaccggtcttcatcagtcgtgtttatttttcttagcaacagaacattagagtactatgacgtcacagtggatannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncTCTA-AACACTTTC-TT-GAA-ATATT--TCGA-C-CGCGT-TAC-CG----G-TCTT----CATCAGT-C-G-T---GTTT-ATTT--T---TCCG-TAGC-AA--C-ACA----------A--CTA-CAACA-CA-T-TAG--AGTA--------C--T--ATG-A-CG-TCAC--AG--TGGGA-TA-TTA-AGTTT-GAAC-AA--TAA----CG-TCA-CAGTTTGAAATTT-ATGCG--CCAAA-CATGTTT---GAAAAA---TAG-TAAAG--AGTCTT----ATGAAATTAACAA---T--AGC-----TAAGTTAGCCGC-GTCGGC--AT------------AT--------------AAG-G--TAGAATGAAATA------T-------ATAAGT-AT----GGTA-CAAAATATTAGGGAAA-T-ACGAACACAT-AGCAGTTG-ACTACT--GACCTAT-GT------GAATTACAACATG---------AA--------ATATAC-CAT-TAGTAATT----AA-TTA--TACA-TGTA-CA----------T---ACATAATTATACAAT-ATAAA-AAGAGTTA--T-------A----CAAACAA---T---TT--TC--TA--CAT----TCTATGTTTACATTGTT--AAGA--CG----CA-TTTTTAAAG--ACAGAAATG
gi|8 : ataatacaaaagtctctcatcggagtaaaatttaaaaaaaaaaaaaacaaacG--ACAGAAGTGTT-CC-GCTTGTTAT--TTCCGA-A-T--G--GT-GCGTAAGTG-TTCAATTGTTT--C-TTC--CATAGGT-TTTCTCT-AAATCGACGATAAATG--T--C-ATCTTTG-TAAAGC--TTTCCATCCC-T--ATTATAG--AA-AATCACTTAT-A-TTGTGAGAGTCCGTGC--A-AA-A-ATGAA-TA--CTA-CCAGGTCGTC-AGTT-TTCCTTCTAATAACTGAC-AAATT-TAACACATGCCTCTGAT----A-TAAAGTAGCACAG-G-TTTTCC-CCACA--T-A--T-ACG-A-------TT----TTA--TTGCA---TT-TTTAG-------C-AGAACA-CT--CCATAAA-CT---A-CGTTACTGGA---T--ACA-A-TT-A-A-TG-TA-ATTTTTA--ATATGA-T-AT--T-TGT-GTCT-TTT-ACA-ATCTTT-CG-AAT--TGG--TTAG----T-TTT-TATGAC-ATA-TTGACATAAAAT-GC--ACTTTTTA-GC----A-CCACA--T-GGC--TCGC
gi|9 : -GAA-ATATT--TCGA-C-CGCGT-TAC-CG----G-TCTT----CATCAGT-C-G-T---GTTT-A-TT--T---TCCG-TAGC-AA--C-ACAAC--GTACA-A--CTA-C-ACA-CA-T-TAG--AGTA--------C--T--ATG-A-CG-TCAC--AG--T-GGA-TA-TTA-AG-TT-GAAC-AA--TAA----CG-TCA-CAC-TTGAAA-TT-ACGCG--CAAAA-CA--TTT---G-AAAA---TAG-T-AAG--AGTC-T----AT-AAATTAACAA---T--AGC-----TAAGTTAGCCGT-GTCCGC--GT------------ATCTTCAAGGATGAATAAGCG--TAGACTGAAATA------T-------GTAAGTAAT----GGTA-CAAAATA-TAGGGAAATT-ACGAACACAT-AGCAGTTG-ATTACT--GACCTAT-GT------GAA----cttt
5 sequences could not be aligned to this reference sequence:
Unaligned ( gi|17 ): TTTTTTTATTGAATAAATTCTTTTATATGTACCAAAATGCCTCTCTTCCGAAATGCTACATGTAATATGGGCGTATTTCTAAAAGCCTTCTTGGAGTGGTCAAAGTTCTCAAATTTTTTTTTTTTTTGAATATTGGAAAGTCCATTGGAAAGTCCTTTATATCAGAAAAGGAACGCGATTACACCGTTTCGTCTTTTTACTGTAGTT
Unaligned ( gi|20 ): TCTTTTATAGTTACCAAAATGCCTCTTCTTCCGAAATGCTACATGTTAATATGGGCGTATTTTTAAAAGCCTTCTTGGACGTGGTCAAAGTTCTCAAAATTTTTTTTTTTGAATATTGGAAAGTCCATTGGAAAGTCCTTTATATCAGAAAAGGAACGCGATTACACCGTTTCGTCTTTTTACTCGTAGTTACA
Unaligned ( gi|33 ): AGACGTAATCTGAACCACTATACTAATTTAAAATTTATGTGGCATTTAAGAGTGGTTTATATTNATGATT
Unaligned ( gi|34 ): ATATATTACAAAGTCTCTTTCATCGGCAAGTTAAAATTAAAAAAAAATAACTCTAAACACTTTCTT
Unaligned ( gi|36 ): ATATATAAAGTCTCTTTCATAGGAGTAAAATTAAAAAACTCTGAACACTTTATT