lowQualScore : 11111111111 1111111111 11 1 222 22222222 22 1 44444444444 777777777777777777777777777 1 3 22 11111111 11111111
lowQualScore : 4 3 3 3 44 44 7777 44 2 2 2 33 777777 2 11111111111 2 1111111111 2 2 2 4 4 4 00 5 1 777 777 777 66 4 3 66 4 9999 4 4 4 66 66 555 22222222 4 22 888 66 5 0 8 33333333333 333333333333333333333333333 0 0 888 2 6 7777 3 3 2 2 11 88888888 2 33 33333333 5555 2 2 33 2 2 33 33 33
lowQualScore : . . . . .. .. .... .. . . . .. ...... . ........... . .......... . . . . . . .. . . ... ... ... .. . . .. . .... . . . .. .. ... ........ . .. ... .. . . . ........... ........................... . . ... . . .... . . . . .. ........ . .. ........ .... . . .. . . .. .. ..
lowQualScore : 6 6 5 3 66 66 1111 66 5 5 5 44 222222 5 99999999999 5 3333333333 7 7 7 0 4 4 66 0 9 888 888 888 11 4 9 11 4 4444 4 4 4 11 11 888 22222222 4 00 888 99 0 2 8 00000000000 222222222222222222222222222 1 2 999 2 8 1111 3 1 5 5 33 11111111 5 44 44444444 3333 7 7 77 7 7 77 77 77
consensus : GTTTGA-AACTCGCTG-TAAAA--TT--A----GCTGGA--CATG-CAGGGC-T-AA--C------TAC-TTGT-----------AAAANTT---------GTTA-GCCC-T-GCC-AGAGA-GCCAC-T--AGCCCTG---C---AA---TAT--AT-TTTCTT--GGTATAC-TAA----T-TAT-C-TT--A--TCTTATTCAAGCGATAATATGA--------T-TAAAACTTANATTCACATCTTC--GAT--CCCAA-TCATAAAAATGTCGATGTTATT-CAACTTCATTACCGATT-------------T-------------TTCTCTCAGCGGAA--ATTTTAACCCGTCCGGTCGGGCGTCTTTG----C-A-AAG-AAATGTGT-TCGCCCGCGGCAGAA-TTT-AT--GCGTCTCGG--------GC----GGTC-GGG-C--G-TACGGTT-ATT--T--C--AAACACTG
Reference ( gi|5 ) : GTTTAA-AACTCACTG-TAAAA--TT--A----GCTGGA--CATG-CAGGGC-T-AA--C------TAC-TTGT-----------AAAATTT---------GTTA-GCCC-T-GCC-AGAGA-GCCAC-T--AGCACTG---C---AA---TAT--AT-TTTGTT--GGTATAC-TAA----T-TAT-C-TT--A--TCTTATTCAAGCGATACTATGA--------T-TAAAATTT-TATTCACATCTTT--GAT--CCCAA-TCATAGAAATGTCGATGTCATTGCAATTTCATTACCGATT-------------T-------------TTCTCTCAGCGGAA--GTTTTAACCCGTCCGGTTGGGCGTCATTG----C-ATAAG-AAATGTGT-TCCTCCGCAATAGAA-TTT-AT--GCGTCTCGG--------GC----GGTC-GGG-C--G-TACGGTT-ATT--T--C--AAACACTG
gi|3 : GTTTGA-AACTCGCTG-TAAAA--TT--A----GCTGGA--CATG-CAGG-C-T-AA--C------TAC-TTGT-----------AATGTTT---------GT---GCCC-T-GCC-AGAGA-GCC---T--AGCCCTG---C---AA---TAT--AT-TTTGTT--GG-ATAC-TAAGTACTGTAT-C-TT--G--TCTTATTCAAGAGATAATATGA--------T-TAAAACTT-AATTCACATCTTC--GAT--CCCAA-TCATAAAAATGTCGATATTATTGCGACTGCATTACCAATT-------------TAATACATCTAAATTTCTCTCAGCGAAA--ATTTTAACCCGTCCGGTCGGGCGTCATTG----C-A-ACG-AAATGTGT-ACGCCCGCAACAG-A-TGT-AT--GCGTCTCGG--------GC----GGTC--GG-C--G-TACGGTT-ATT--T--C--AAACACT
gi|4 : gtGTTTGA-AACTCGCTC-TAAAT--TT--A----GCTGGA--CATG-CAGAGT-T-AA--C------TAC-TTGT-----------AACATTC---------TTTA-GCCC-T-GCC-AGAGA-GCAAC-T--AGCCCTG---C---AA---TAT--AT-TTTCTT--GGTATAC-TAA----T-CAT-C-TT--A--TCTTAT--------------GA--------T-TAAAACTT-CATTCACATCTTC--GAT--CCCAA-TCATAAAAATGTCGATGCTAAATCAACTTCATTACCGATT-------------TAATACATCTAAATTTCTTTCAGCGGAA--ATTTTAAAC-GTCCGGTCTGGCGTCTTTG----C-A-AAG-AAATGTGT-TCGCCCGCAGCAGAA-TTT-ATATGCGTCTCGGGCGGTCGGGC----GGTC-GGG-C--G-TACGGTT-ATT--T--C--AAACA
gi|10 : tGTTTGA-AACTCGCTG-TAAAA--TTTAA----GCTGGA--CATG-CAGGGC-TTAA--C------TACCTTGT-----------AAAATTT---------GTTA-GCCC-T-GCC-AGAGA-GCCAC-TA-AGCCCGG---CGAAAA---TTT--AT-TTTCTT--CGTATACTTAA----T-TAT-C-TT--A--TCTTATTCAAGCGA---TATGA--------T-TAAAATTTATATTCATATC-TT--GAT--CCCAA-TCATAAAAATGTAAAC-TCAT----------TTACCGATT-------------T-------------
gi|9 : GTTTGA-AACTCGCTG-TAAAA--TT--A----GCTGGA--CATG-CAGGGC-T-AA--C------TAC-TTGT-----------AAAAACT---------GTTA-GCCC-T-GCC-CGAAA-GCCAC-T--AGCCCTG---C---AA---TAT--AT-TTTGTT--GGTATAC-TAA----T-TAT-C-TT--A--TCTTATTCAAACGACAATAGGATTAAGTTTT-TAAAACTT-AATTCACATCTTC--Gaatacatataaatttctttgcaaagaaatgtgttcggccgcgacgcgtctcgggcggtcggcgtacggttatttcaaacactg
gi|24 : gtGTTTGA-AACTCGCTG-TAAAA--GG--A----GCTGGA--CATC-CAGGGC-T-AG--C------TAC-TTGT-----------AAAATTT---------GTTA-GCCC-T-GCC-AGGGA-TCCAC-T--AGCCCTA---C---AA---TAT--AT-TTTGTT--Gttaaaatttctctcagcgggaattttaacccgttcggtcaagcgtctttgcaaagaaatgtgttcacccgcggcagaatttatgtgtctcggacggtcgggcgtacggttatttcaaacact
gi|1 : gtGTTTGACAACTCGCTGCTAAAAGTTT--ATAAGACTGGA--CATG-CATGGCGT-AATAC------TCC-TTGTTATTTTTTCTAAAAATTTTATTTCAGTGTGATGCCCATAGCC-AGAGAAGCCAC-TTAAGCCCAGAGCC---AAAATTGT--AT-TTTCTTTCGGTATAC-TAA----T-TAT-CGTT--A--TCTTATTCAAGCGA---TATGA--------T-AAAAATTTATATTCATATCTTTCCGATTACCCAATTCATAAAAATGT-AACCT--------TCTCATTACCGATT-------------T-------------T
gi|29 : caacctttctacgtaaatgagtacacaccactccattgggaaaaaatctttatcatttaatagtgtttgtaaaatgagcgatccaaacatactattcaaaaagtatatgacctctcttatttgtacacatcgtattttctcttcactttttctaaccattttctctgattagaatacctatcaatacactctcccacaaactctttgtcagagtcattagcgtatttagatctccacacaggagtctaggcaagcattatatcaataaagtagaagcctaggcttattgtgggatatatatcgcggtaacaactccctagcactggaggtcttcgccgcgagacgtcacagccgagcggaaactcctagcactgaggcttcgcgaagcggagagcgctcgctaccgctcgcgaagctcacatagtgcctaggattttttaccttcgatattttcactatactatcttacttttacttagaattaaggccggagctccgtggttgaatatcattcacatcagaatgtttcctttttgtcacaaggcagttttcctttctttatcagtGTTTGA-AACTTGCTT-TAAAA--TT--A----GCTGGA--CATG-CAGTGC-T-AA--CTACATGTAC-TTGT-----------AAAAATT---------GTTA-GCCC-T-GCC-attacatataaagagattctttgccataatgaatgtttcggccgcgacgcgtctcgacacgcacagggtcgggacaggtacggttatttgtcaaacactcgccttgacaaaaattgcaagcttaaatggcaggaaagaaaatacttgcgtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntacgaaaacttctgtaaatgctttgttagtttcaacaaacaggtgctacataattactctataaattaaatcacatgaaataaa
gi|7 : TTTGA-AACTCGCTG-TAAAA--TT--A----GCTGGA--CATG-CAGGGC-C-AA--C------TAC-TTGT-----------AAAATTT---------GTTA-GCCC-T-GCC-AGAGA-GCCAC-T--AGCCCTG---C---AA---TAT--AT-TTTGTT--GGTATAC-TAA----T-TAT-C-TT--A--TCTTATTCAAGTGATAATATGA--------T-TAAAACTT-AATTCACATCTTC--GAT--CCCAA-TCATAAAAATGTCGATGTT------------------ATT-------------T-------------TTCTCTCAGCGGAA--ATTTTAACCCGTCCAGTCGGGCGTCTTTG----C-A-AAG-AAATGTGT-TCGCCCACAGCAGAA-TTT-GT--GCATCTCGG--------GC----GCTC-GGG-T--G-TACAGTT-ATT--T--C--AAACACTcg
gi|8 : TTTGA-AACTCGCTG-TAAAA--TT--A----GCTGGA--CATG-CCGGGC-T-AA--C------TAC-TTGT-----------AAAATTT---------GTTA-GCCC-T-GCCCAGAGA-GCCACCT--AGCCCGG---C---AA---AAT--TTATTTCTT--CGTATAC-TAA----T-TATTC-TTTAA--TCTTATTCAAGCGATA---TGAAT------TATAAAATTTATATTCATATCTTC--GAT--CCCAA-TCATA-AAA-----ATGT------AACTTCAT----------------------------------------TTACCG--A--GATTTAATACATTA---TAAATTTCTTTG----C-A-AAG-AAATGTGT-TCG-CCGCGAC-------------GCGTCTCGG--------GC----GGTC-GGG-C--G-TACGTTTCATT--T--C--AAACACTG
gi|11 : gtTTGA-AACTCGCTG-TAAAA--TT--A----GCTGGA--CATG-CAGGGC-T-AA--C------TAC-TTGT-----------AAAATTT---------GTTA-GCCC-T-GCC-AGAGA-GCCAC-T--AGCCCGG---C---AA---AATTTAT-TTTCTT--CGTATAC-TAA----T-TAT-C-TT--A--TCTTATTCAAGCGATA---TGA--------T-TAAAATTTATATTCATATCTTC--GAT--CCCAA-TCATAAAAATGT------------AACTTCATTACCGATT-------------T-------------
gi|24 : AA-AATATATTG-TAGGG--CT--A----G-TGGATCCCTGGCAGGGC-T-AA--C------AAA-TTTT-----------ACAAGTA---------GCTA-GCCC-T-Gaatacatataaatttctttgcaaagaaatgtgttcggccgcgacgcgtctcgggcggtcgggcgtacggttatttcaaacac
gi|40 : gtgtttgaaactcgctgtaaaaggagctggacatcTCACTG-TAAAA--TT--A----TCTAGA--CATG-CAAGGT-T-GA--T------TGT-TTAT-----------AAAAgttg
gi|7 : tG-CAGGGC-T-AA--C------AAA-TTTT-----------ACAAGTA---------GTTG-GCCC-T-GC
gi|8 : tttgaaactcgctgtaaaattagctggacatG-CAGGGC-T-AA--C------AAA-TTTT-----------ACAAGTA---------GTTA-GCCC-G-GCcagagagccactagccctgcaatatattttgttggtatactaattatcttatcttattcaagtgataatatgattaaaacttaattcacatcttcgatcccaatcataaaaatgtcgatgttatttttctctcagcggaaattttaacccgtccagtcgggcgtctttgcaaagaaatgtgttcgcccacagcagaatttgtgcatctcgggcgctcgggtgtacagttatttcaaacact
gi|11 : gttttgaaactcgctgtaaaattagctggacatG-CAGGGC-T-AA--C------AAA-TTTT-----------ACAAGTA---------GTTA-GCCC-T-GCccagagagccacctagcccggcaaaatttatttcttcgtatactaattattctttaatcttattcaagcgatatgaattataaaatttatattcatatcttcgatcccaatcataaaaatgtaacttcatttaccgagatttaatacattataaatttctttgcaaagaaatgtgttcgccgcgacgcgtctcgggcggtcgggcgtacgtttcatttcaaacactg
gi|9 : ttgaaactcgctgtaaaattagctggacatG-CAGGGC-T-AA--C------AGT-TTTT-----------ACAAGTA---------GTTA-GCCC-T-GCcagagagccactagcccggcaaaatttattttcttcgtatactaattatcttatcttattcaagcgatatgattaaaatttatattcatatcttcgatcccaatcataaaaatgtaacttcattaccgatttaatacatataaatttctttgcaaagaaatgtgttcggccgcgacgcgtctcgggcggtcgggcgtacggttatttcaaacac
gi|12 : gtgtttgaaactcgctgtaaaattagctggacatTATAC-CAA----T-TAT-C-TT--AGATCTTATTCAAGCGATAATATGA--------T-TAAAACTT-AATTCACATCTTC--GAT--CCCAA-TCATAAAAATGTCGATGTTATTGCAACTTCATTATCGATTTTATACATCTAAAT-------------TTCTCTCAGCGAAA--AATTTAACCCGTCCGGTTGGGCGTCTTTG----C-G-AAG-AAATGTGT-TCGCCCGCGGCAGAA-TTT-AT--GCGTC--------------------TC-GGG-C--G-TACGGCT-ATT--T--C--AAACACTccgaaagccactagccctgcaatatattttgttggtatactaattatcttatcttattcaaacgacaataggattaagtttttaaaacttaattcacatcttcgttaaaatttctctcagcgggaattttaacccgttcggtcaagcgtctttgcaaagaaatgtgttcacccgcggcagaatttatgtgtctcggacggtcgggcgtacggttatttcaaacact
gi|21 : GATCTTATTGCAACTTCATTACCGATT-------------TAATACATCTAAATTTCTCTCAGCAGAA--ATTTTAACCCATCCGGTCAGGCCTCTTTA----C-A-AAG-AAATGTGC-ACCT--GCGGCAGAA-TTT-AT--GTGTCTTGG--------GC----GGTC-AGG-C--A-TACGGTT-ATT--T--C--AAACAC
gi|23 : ACTACAACTTCATTACCGGTA-------------T-------------T-----CAGCGGAAAAGTCT-AACACGTCCGGTCGGGCGTC--TGTCTTC-ACATG-CAATATGTAT----AGCAATA-AA-TGT-AT--CCTACTCTG--------GC----
gi|9 : -------------T-------------TTCTCTCAGCGGGA--ATTTTAACCCGTTCGGTCAAGCGTCTTTG----C-A-AAG-AAATGTGT-TCACCCGCGGCAGAA-TTT-AT--GTGTCTCGG--------AC----GGTC-GGG-C--G-TACGGTT-ATT--T--C--AAACACT
gi|27 : gtgtttgaaactcgctgtaaaattagctggacatgcagggctaactacttgtaaaaactgttagccctgcccgaaagccactagccctgcaatatattttgttggtatactaattatcttatcttattcaaacgacaataggattaagtttttaaaacttaattcacatcttcgttaaaaGCGTCTTTG----C-A-AAG-AAATGTGT-TCGCCCGCAGCAGAAATTT-AT--GCGTCTCGG--------GC----GGTC-GGG-C--G-TACGGTT-ATT--T--CATAAACACTG
gi|11 : tTCTTTG----C-A-AAG-AAATGTGT-TCGGCCGCGAC-------------GCGTCTCGG--------GC----GGTC-GGG-C--G-TACGGTT-ATT--T--C--AAACAC
gi|10 : ttgaaactcgctgtaaaattagctggacatgcagggctaactacttgtaaaatttgttagccctgccagagagccactagcccggcaaaatttattttcttcgtatactaattatcttatcttattcaagcgatatgattaaaatttatattcatatcttcgatcccaatcataaaaatgtaacttcattaccgatttaatacatataaattTCTTTG----C-A-AAG-AAATGTGT-TCGGCCGCGAC-------------GCGTCTCGG--------GC----GGTC-GG--C--G-TACGGTT-ATT--T--C--AAACACTG
gi|1 : gtttgaaactcgctgtaaaatttaagctggacatgcagggcttaactaccttgtaaaatttgttagccctgccagagagccactaagcccggcgaaaatttattttcttcgtatacttaattatcttatcttattcaagcgatatgattaaaatttatattcatatcttgatcccaatcataaaaatgtaaactcatttaccgatttaatacatataaattTCTTTG----CCATAAT-GAATGT-T-TCGGCCGCGAC-------------GCGTCTCGACAC-----GCACAGGGTC-GGGACAGG-TACGGTT-ATTTGT--C--AAACACT
gi|28 : caacctttctacgtaaatgagtacacaccactccattgggaaaaaatctttatcatttaatagtgtttgtaaaatgagcgatccaaacatactattcaaaaagtatatgacctctcttatttgtacacatcgtattttctcttcactttttctaaccattttctctgattagaatacctatcaatacactctcccacaaactctttgtcagagtcattagcgtatttagatctccacacaggagtctaggcaagcattatatcaataaagtagaagcctaggcttattgtgggatatatatcgcggtaacaactccctagcactggaggtcttcgccgcgagacgtcacagccgagcggaaactcctagcactgaggcttcgcgaagcggagagcgctcgctaccgctcgcgaagctcacatagtgcctaggattttttaccttcgatattttcactatactatcttacttttacttagaattaaggccggagctccgtggttgaatatcattcacatcagaatgtttcctttttgtcacaaggcagttttcctttctttatcagtgtttgacaactcgctgctaaaagtttataagactggacatgcatggcgtaatactccttgttattttttctaaaaattttatttcagtgtgatgcccatagccagagaagccacttaagcccagagccaaaattgtattttctttcggtatactaattatcgttatcttattcaagcgatatgataaaaatttatattcatatctttccgattacccaattcataaaaatgtaaccttctcattaccgattttattacatataaagagatAAG-AAATGTGT-TCGCTCATGGCAGAA-TTT-AT--GCGTCTTGG--------GC----GGTC-GGG-C--C-TACGGTT-ATT--T--C--AAACACcgccttgacaaaaattgcaagcttaaatggcaggaaagaaaatacttgcgtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntacgaaaacttctgtaaatgctttgttagtttcaacaaacaggtgctacataattactctataaattaaatcacatgaaataaa
gi|33 : cgattcctaccAAG-AAACGTGT-TGC-CCGCGGCAGA--TTT-AT--GCGTCTCGG--------AC----GGTC-GGG-C--GTTACGGTT-ATT--T--C--AAAAACT
gi|30 : AAGTAGATATAT-CCCCCCGCCCCCGAAATTT-AT--GCGTCTCCG--------GC-----TTCGGGG-C--G-TACAGTT-ATT--TTAT--AAACACT
gi|31 : AAG-AAATTTAT-TTTCCTGCAGCAAAG-TTTTAT--GCCTCTTGT--------GC----GGTT-AGG-C--A-CATGTTT-ATC--T--T--AAACACT
22 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|2 ): CCACCCCACCAGATTAGAATTTTTTATCGATTTTTAAGCATTTTTGGCTTTCTTAATCAATTTATTATGCTTTCAAGAAATTTCGAGGGAAACCAACATTTCTACGTAAAATTGGATGTAAACCCCTCCATTGGGAAAAATCTATTTTATATGTTTTTAAAATGACATCAAACATAATATTCAAAAATATTGCCTTTATTTTACACATCTATTTCTTTCACTTTTCTAAAATTTCTATTAAATCTATAATTAATTTTCCCACAACTCTTTGTTCACAGTTCTTACTATATCATCACAGGAGTCGGCAATTTATCAAAATTAAAGTTAGATAGTTAGAGTTAGGCTATATGTGAATAATATCGGTAAAAATTCCTAGCACTGAGCTTCGCGGCCCCCACCGTAGCGACGCGAAAAATCCTAGCACTGAGCTTTCGCGAGCGAAGCCGTCGTACGCTCGCACGAAGCTTCAGTGCTTTAGGATTTTTTTACCGAATATTTTCCACATACTTCTACTTTATGTAAAATTGCCGACTCC
Unaligned ( gi|6 ): TTTTTTTTATTTTTAAGCATTTTTTGGGGCTTTTATTAATTAATCAATTTGAATTATGTCTTGTCAAGAAATTTCGAGAAAAACCAAACATTTCTACGGTAAATGAGGTACCCTCCATGTGGGGAAAAATCTAATTTTATCTGTTTTAAAAAAAAAAATGACATCAACCATTATAAAATTCAAATATAAGTTTGGCCTTTAATTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGAGTCGGGGG
Unaligned ( gi|13 ): GGGGCGGCAATTTTATCAATTAAGTAGAAGTAAGGCTATATGTGAAATATCGGTAAATCCTAAGCACTGAAGCTTCGCGAGCGTAGCGAGCGAAAAAATCCTAGCACTGAGCTTTCGCAGCGAAGCGCTCGCTACGCTCGCGAAAGCTCAGTGCTAGGATTTTTTACCGTATTTCACATACTTCTACCTTTATTGATAAAATTGCGACTCCCTGT
Unaligned ( gi|14 ): TGGCAAAATCAAGCCTAAATTTGGGAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAAAATATCGAAAACTTGTACGAATGCCTGTTTTCAACAAATAGTTACAAATTACTTTAAAAATTCACTGAAAAAATTGGTATAATTATAATAG
Unaligned ( gi|15 ): ACAGGAGTCGGCAATTTTATCAATAAAGTAGAAATATTTGAGAAATGGGCGGAAATTCTACCACTGAGCTTTGCGAGCGTGAAGCTCACTTATATGTTTGCGAATTAAGCTCACTGCTCGCAAAGCTCACTGTGCCAGTTAGAGTTTTCGCTTATTTCTCATATTTTATAATTGCCGACTCCTGTG
Unaligned ( gi|16 ): CATTGCAAAAAATGCAAGCTTAAATTGGGAGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGAAAACTTGTACAATGCGGTTTCAACCAACATGTACAAATTACTTTTAAAAAAATCACTGAAAAATGTATAATTAATAAAA
Unaligned ( gi|17 ): CACCCACCCAGAATTAGAATTTTTATCGATTTTTAAGCATTTTGGCTTTTATTAATCAATTTGAATTATGCTTGTCAAGAAATTTCGAGAAACCAACATTTCTACGTAAATGAGTACCCCTCCATTGGGAAAAATCTATTTTATCATGTTTTAAAATGACATCAAACATAATATTCAAA
Unaligned ( gi|18 ): ACAGGAGTCGGCAATTTTATCATAAAGTAGAAGTATGTGAAATATCGGTAAAAATCCTAGCACTGAGCTTCGCGAGCGTAGCGAGCGAACGCTCGCCGAAGCTCAGTGCTAGGATTTTTACCGATATTTCACATACTTCTACTTTATTTGATAAAATTGCCGACTCCT
Unaligned ( gi|19 ): CAGGAGTCGGCAATTTTATCAATAAAGTAGAAGTATGGTGAAATATCGGTAAAAATCCTAGCACTGAGCTTCGCGAGCGTAGCGAGCGAACGCTCGCGAAGCTCAGTGCTAGGATTTTTACCGATATTTCACATACTTCTACTTTATTGATAAAATTGCCGACTCCTG
Unaligned ( gi|20 ): GCAAGCTAAATTGGGAGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCGAAAACTTGTACAATGCTGTTTTCAACAACATGTACAAATTACTTAAAAAATCACTGAAAAATTGTATAATTAATAATAG
Unaligned ( gi|22 ): ACAGGAGTCGGCAATTTTATCAATAAAATAAAAATGTATGAGAAATGGGGGTGACTACCACTGAGCTTCACGAGCGTGAAGCTCAGTGTAGAGTCACCCTCATTTCTCATACATTTTAATTTATTGATAAAATTGCCGACTCCTGT
Unaligned ( gi|25 ): CACAGGAGTCGGCAATTTTATCAATAAAGACTTAAGTAGAAGTATGTGAGATATCGGTAAAAATCCTATCACTGAGCTTCGCGAGCTTAGCGGAACTAACTCTA
Unaligned ( gi|26 ): AAGCACAGAGTGGCAATTTTATCCAATAAATAAAAAAAGCTATGAGAATGGGGTAACTGCTACGCTGAAGCCTAGTGTAGAGTTACCAGCTCATTTCTC
Unaligned ( gi|32 ): CACAGGAGTCGGCAGTTTTCTCTGTCAAGGTCTACAATTATGAATATAAACAACTACTAAACTTCGCGAACG
Unaligned ( gi|34 ): AATCACAAGAGTCGGCAATTTATCAATAAACTTAAAGTAGAAAAATCTGTGAGAAATGGGGGGGGGGGG
Unaligned ( gi|35 ): AGAATCCGCATCCATTTCCCGTTTTACCAGCAAATGTCGTTTCTGCTTCACAAGAGTTAGATAACTC
Unaligned ( gi|36 ): ATATCATTTCACATCGGAAATGTTTCTTTTTTCAAGGCGTTTTCCTTTCCTCTAATCG
Unaligned ( gi|37 ): GGATATCTTCACATCGAATGTTTCTTTTTTCAAAAGGCGTTTTCCTTTCCTTTATCA
Unaligned ( gi|38 ): GGAGTCGGCAATTTATCAATAAAGTAGATATATGCGAGAAAGAGTTGCTAAATTTTA
Unaligned ( gi|39 ): CTACCACAGGGGTCGGCAATTTCTCAATAAACATTTTAGAGTAGAGAA
Unaligned ( gi|41 ): NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
Unaligned ( gi|42 ): CAGCTCTCCGCGCAAATTTATTGCGCTTACAC
Alignments
lowQualScore : 1111111111 111111111111 111 1111 11111111 11 4444444444444 666666666666666666666666666
lowQualScore : 3 3 44 44 7777 3 3 44 999999 3 4444444444 1 888888888888 3 3 3 4 4 55 4 0 777 222 777 4 2 55 4 8888 4 4 4 55 55 1111 4 44444444 55 77 55 66 4 2222222222222 3 3 3 3 444444444444444444444444444 4 3 5 2 88888 33 2 99999999 444 5555 2 2 33 2 2 33 33 33
lowQualScore : . . .. .. .... . . .. ...... . .......... . ............ . . . . . .. . . ... ... ... . . .. . .... . . . .. .. .... . ........ .. .. .. .. . ............. . . . . ........................... . . . . ..... .. . ........ ... .... . . .. . . .. .. ..
lowQualScore : 6 3 66 66 1111 3 3 66 666666 3 6666666666 0 666666666666 6 6 6 0 0 55 0 8 000 555 000 0 5 55 0 5555 0 0 0 55 55 5555 0 55555555 55 44 55 11 4 7777777777777 3 3 3 3 333333333333333333333333333 4 1 0 5 11111 44 5 11111111 444 3333 5 5 44 5 5 44 44 44
consensus : GTTTGA-AACTCGCTG-TAAAA--TT--A----GCTGGACATGCAGGGC-T-AA--C------TAC-TTGT----------AAAATTTGTTA------------GCCC-T-G-CCAGAGA-GCCA-CT--A-GCCCTG---C---AA---TATAT-TTTNTT--GGTATACT-AA----T-TA-TC-TT--A--TCTTATTCAAGCGATAATATG-A--------T--TAAAACTTATATTCACATCTT--CGAT--CCCAA-TCATAAAAATGTCGATGTT-ATT-CA-A-CTTCA-TT-ACCGATT-------------T-------------TTCTCTCAGCGGAAA-TTTTAACCCGTCCGGTCGGGCGTCTTTGC-A-AAG-AAATGTGTTCGCCCGCGGCAGAA-TT--T-ATGCGTC--------TCGG---GC----GGTC-GGG-C--G-TACGGTT-ATT--T--C--AAACACTG
Reference ( family-7250 ) : GTTTGA-AACTCGCTG-TAAAA--TT--A----GCTGGACATGCAGGGC-T-AA--C------TAC-TTGT----------AAAANTTGTTA------------GCCC-T-G-CCAGAGA-GCCA-CT--A-GCCCTG---C---AA---TATAT-TTTCTT--GGTATACT-AA----T-TA-TC-TT--A--TCTTATTCAAGCGATAATATG-A--------T--TAAAACTTANATTCACATCTT--CGAT--CCCAA-TCATAAAAATGTCGATGTT-ATT-CA-A-CTTCA-TT-ACCGATT-------------T-------------TTCTCTCAGCGGAAA-TTTTAACCCGTCCGGTCGGGCGTCTTTGC-A-AAG-AAATGTGTTCGCCCGCGGCAGAA-TT--T-ATGCGTC--------TCGG---GC----GGTC-GGG-C--G-TACGGTT-ATT--T--C--AAACACTG
gi|1 : GTTTGACAACTCGCTGCTAAAAGTTT--ATAAGACTGGACATGCATGGCGT-AATAC------TCC-TTGTTATTTTTTCTAAAAATT-TTATTTCAGTGTGATGCCCATAG-CCAGAGAAGCCA-CTTAA-GCCCAGAGCC---AAAATTGTAT-TTTCTTTCGGTATACT-AA----T-TA-TCGTT--A--TCTTATTCAAGCG---ATATG-A--------T--AAAAATTTATATTCATATCTTTCCGATTACCCAATTCATAAAAATGT-AACCTT-----------CTCA-TT-ACCGATT-------------T-------------T
gi|1 : caacctttctacgtaaatgagtacacaccactccattgggaaaaaatctttatcatttaatagtgtttgtaaaatgagcgatccaaacatactattcaaaaagtatatgacctctcttatttgtacacatcgtattttctcttcactttttctaaccattttctctgattagaatacctatcaatacactctcccacaaactctttgtcagagtcattagcgtatttagatctccacacaggagtctaggcaagcattatatcaataaagtagaagcctaggcttattgtgggatatatatcgcggtaacaactccctagcactggaggtcttcgccgcgagacgtcacagccgagcggaaactcctagcactgaggcttcgcgaagcggagagcgctcgctaccgctcgcgaagctcacatagtgcctaggattttttaccttcgatattttcactatactatcttacttttacttagaattaaggccggagctccgtggttgaatatcattcacatcagaatgtttcctttttgtcacaaggcagttttcctttctttatcagtTCTTTGCCATAAT-GAATGT-TTCGGCCGCGAC-------------GCGTC--------TCGACACGCACAGGGTC-GGGACAGG-TACGGTT-ATTTGT--C--AAACACTattacatataaagagattctttgccataatgaatgtttcggccgcgacgcgtctcgacacgcacagggtcgggacaggtacggttatttgtcaaacactcgccttgacaaaaattgcaagcttaaatggcaggaaagaaaatacttgcgtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntacgaaaacttctgtaaatgctttgttagtttcaacaaacaggtgctacataattactctataaattaaatcacatgaaataaa
gi|10 : caacctttctacgtaaatgagtacacaccactccattgggaaaaaatctttatcatttaatagtgtttgtaaaatgagcgatccaaacatactattcaaaaagtatatgacctctcttatttgtacacatcgtattttctcttcactttttctaaccattttctctgattagaatacctatcaatacactctcccacaaactctttgtcagagtcattagcgtatttagatctccacacaggagtctaggcaagcattatatcaataaagtagaagcctaggcttattgtgggatatatatcgcggtaacaactccctagcactggaggtcttcgccgcgagacgtcacagccgagcggaaactcctagcactgaggcttcgcgaagcggagagcgctcgctaccgctcgcgaagctcacatagtgcctaggattttttaccttcgatattttcactatactatcttacttttacttagaattaaggccggagctccgtggttgaatatcattcacatcagaatgtttcctttttgtcacaaggcagttttcctttctttatcagtgtttgacaactcgctgctaaaagtttataagactggacatgcatggcgtaatactccttgttattttttctaaaaattttatttcagtgtgatgcccatagccagagaagccacttaagcccagagccaaaattgtattttctttcggtatactaattatcgttatcttattcaagcgatatgataaaaatttatattcatatctttccgattacccaattcataaaaatgtaaccttctcattaccgattttattacatataaagagatGTTTGA-AACTCGCTG-TAAAA--TTTAA----GCTGGACATGCAGGGC-TTAA--C------TACCTTGT----------AAAATTTGTTA------------GCCC-T-G-CCAGAGA-GCCA-CT--AAGCCCGG---CGAAAA---TTTAT-TTTCTT--CGTATACTTAA----T-TA-TC-TT--A--TCTTATTCAAGCGATA---TG-A--------T--TAAAATTTATATTCATATCTT---GAT--CCCAA-TCATAAAAATGT-------------A-A-ACTCA-TTTACCGATT-------------T-------------cgccttgacaaaaattgcaagcttaaatggcaggaaagaaaatacttgcgtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntacgaaaacttctgtaaatgctttgttagtttcaacaaacaggtgctacataattactctataaattaaatcacatgaaataaa
gi|10 : TCTTTGC-A-AAG-AAATGTGTTCGGCCGCGAC-------------GCGTC--------TCGG---GC----GGTC--GG-C--G-TACGGTT-ATT--T--C--AAACACTGaatacatataaatttctttgcaaagaaatgtgttcggccgcgacgcgtctcgggcggtcggcgtacggttatttcaaacactg
gi|11 : gtttgaaactcgctgtaaaatttaagctggacatgcagggcttaactaccttgtaaaatttgttagccctgccagagagccactaagcccggcgaaaatttattttcttcgtatacttaattatcttatcttattcaagcgatatgattaaaatttatattcatatcttgatcccaatcataaaaatgtaaactcatttaccgatttaatacatataaattTTGA-AACTCGCTG-TAAAA--TT--A----GCTGGACATGCAGGGC-T-AA--C------TAC-TTGT----------AAAATTTGTTA------------GCCC-T-G-CCAGAGA-GCCA-CT--A-GCCCGG---CAA-AA---TTTAT-TTTCTT--CGTATACT-AA----T-TA-TC-TT--A--TCTTATTCAAGCG---ATATG-A--------T--TAAAATTTATATTCATATCTT--CGAT--CCCAA-TCATAAAAATGT-------------A-A-CTTCA-TT-ACCGATT-------------T-------------
gi|11 : TCTTTGC-A-AAG-AAATGTGTTCGGCCGCGAC-------------GCGTC--------TCGG---GC----GGTC-GGG-C--G-TACGGTT-ATT--T--C--AAACACaatacatataaatttctttgcaaagaaatgtgttcggccgcgacgcgtctcgggcggtcgggcgtacggttatttcaaacac
gi|12 : ttgaaactcgctgtaaaattagctggacatgcagggctaactacttgtaaaatttgttagccctgccagagagccactagcccggcaaaatttattttcttcgtatactaattatcttatcttattcaagcgatatgattaaaatttatattcatatcttcgatcccaatcataaaaatgtaacttcattaccgatttaatacatataaattTATACC-AA----T-TA-TC-TT--AGATCTTATTCAAGCGATAATATG-A--------T--TAAAACTTA-ATTCACATCTT--CGAT--CCCAA-TCATAAAAATGTCGATGTT-ATTGCA-A-CTTCA-TT-ATCGATTTTATACATCTAAAT-------------TTCTCTCAGCGAAAA-ATTTAACCCGTCCGGTTGGGCGTCTTTGC-G-AAG-AAATGTGTTCGCCCGCGGCAGAA-TT--T-ATGCGTC-----------------------TC-GGG-C--G-TACGGCT-ATT--T--C--AAACACT
gi|21 : GATCTT-ATTGCA-A-CTTCA-TT-ACCGATT-------------TAATACATCTAAATTTCTCTCAGCAGAAA-TTTTAACCCATCCGGTCAGGCCTCTTTAC-A-AAG-AAATGTG--CACCTGCGGCAGAA-TT--T-ATGTGTC--------TTGG---GC----GGTC-AGG-C--A-TACGGTT-ATT--T--C--AAACAC
gi|23 : -CA-A-CTTCA-TT-ACCGGTA-------------T-------------T-----CAGCGGAAAAGTCTAACACGTCCGGTCGGGCGTCT
gi|24 : actaGTTTGA-AACTCGCTG-TAAAA--GG--A----GCTGGACATCCAGGGC-T-AG--C------TAC-TTGT----------AAAATTTGTTA------------GCCC-T-G-CCAGGGA-TCCA-CT--A-GCCCTA---C---AA---TATAT-TTTGTT--Ggtcttcacatgcaatatgtatagcaataaatgtatcctactctggc
gi|27 : gtGCGTCTTTGC-A-AAG-AAATGTGTTCGCCCGCAGCAGAAATT--T-ATGCGTC--------TCGG---GC----GGTC-GGG-C--G-TACGGTT-ATT--T--CATAAACACTG
gi|28 : t-AAG-AAATGTGTTCGCTCATGGCAGAA-TT--T-ATGCGTC--------TTGG---GC----GGTC-GGG-C--C-TACGGTT-ATT--T--C--AAACAC
gi|29 : cgattcctaccGTTTGA-AACTTGCTT-TAAAA--TT--A----GCTGGACATGCAGTGC-T-AA--CTACATGTAC-TTGT----------AAAAATTGTTA------------GCCC-T-G-CC
gi|3 : GTTTGA-AACTCGCTG-TAAAA--TT--A----GCTGGACATGCAGG-C-T-AA--C------TAC-TTGT----------AATGTTTGT--------------GCCC-T-G-CCAGAGA-GCC---T--A-GCCCTG---C---AA---TATAT-TTTGTT--GG-ATACT-AAGTACTGTA-TC-TT--G--TCTTATTCAAGAGATAATATG-A--------T--TAAAACTTA-ATTCACATCTT--CGAT--CCCAA-TCATAAAAATGTCGATATT-ATTGCG-A-CTGCA-TT-ACCAATTTAATACATCTAAAT-------------TTCTCTCAGCGAAAA-TTTTAACCCGTCCGGTCGGGCGTCATTGC-A-ACG-AAATGTGTACGCCCGCAACAG-A-TG--T-ATGCGTC--------TCGG---GC----GGTC--GG-C--G-TACGGTT-ATT--T--C--AAACACTcg
gi|30 : gt-AAGTAGATATATCCCCCCGCCCCCGAAATT--T-ATGCGTC--------TCCG---GC-----TTCGGGG-C--G-TACAGTT-ATT--TTAT--AAACACT
gi|31 : -A-AAG-AAATTTATTTTCCTGCAGCAAAG-TT--TTATGCCTC--------TTGT---GC----GGTT-AGG-C--A-CATGTTT-ATC--T--T--AAACACT
gi|33 : -AAG-AAACGTGTT-GCCCGCGGCAGA--TT--T-ATGCGTC--------TCGG---AC----GGTC-GGG-C--GTTACGGTT-ATT--T--C--AAAAACT
gi|4 : GTTTGA-AACTCGCTC-TAAAT--TT--A----GCTGGACATGCAGAGT-T-AA--C------TAC-TTGT----------AACATTCTTTA------------GCCC-T-G-CCAGAGA-GCAA-CT--A-GCCCTG---C---AA---TATAT-TTTCTT--GGTATACT-AA----T-CA-TC-TT--A--TCT--------------TATG-A--------T--TAAAACTT-CATTCACATCTT--CGAT--CCCAA-TCATAAAAATGTCGATGCTAAAT-CA-A-CTTCA-TT-ACCGATTTAATACATCTAAAT-------------TTCTTTCAGCGGAAA-TTTTAA-ACGTCCGGTCTGGCGTCTTTGC-A-AAG-AAATGTGTTCGCCCGCAGCAGAA-TTTAT-ATGCGTCTCGGGCGGTCGG---GC----GGTC-GGG-C--G-TACGGTT-ATT--T--C--AAACA
gi|40 : tTCACTG-TAAAA--TT--A----TCTAGACATGCAAGGT-T-GA--T------TGT-TTAT----------AAAA
gi|5 : tGTTTAA-AACTCACTG-TAAAA--TT--A----GCTGGACATGCAGGGC-T-AA--C------TAC-TTGT----------AAAATTTGTTA------------GCCC-T-G-CCAGAGA-GCCA-CT--A-GCACTG---C---AA---TATAT-TTTGTT--GGTATACT-AA----T-TA-TC-TT--A--TCTTATTCAAGCGATACTATG-A--------T--TAAAATTT-TATTCACATCTT--TGAT--CCCAA-TCATAGAAATGTCGATGTC-ATTGCA-A-TTTCA-TT-ACCGATT-------------T-------------TTCTCTCAGCGGAAG-TTTTAACCCGTCCGGTTGGGCGTCATTGC-ATAAG-AAATGTGTTCCTCCGCAATAGAA-TT--T-ATGCGTC--------TCGG---GC----GGTC-GGG-C--G-TACGGTT-ATT--T--C--AAACACTG
gi|7 : TTTGA-AACTCGCTG-TAAAA--TT--A----GCTGGACATGCAGGGC-C-AA--C------TAC-TTGT----------AAAATTTGTTA------------GCCC-T-G-CCAGAGA-GCCA-CT--A-GCCCTG---C---AA---TATAT-TTTGTT--GGTATACT-AA----T-TA-TC-TT--A--TCTTATTCAAGTGATAATATG-A--------T--TAAAACTTA-ATTCACATCTT--CGAT--CCCAA-TCATAAAAATGTCGATGTT-----------------------ATT-------------T-------------TTCTCTCAGCGGAAA-TTTTAACCCGTCCAGTCGGGCGTCTTTGC-A-AAG-AAATGTGTTCGCCCACAGCAGAA-TT--T-GTGCATC--------TCGG---GC----GCTC-GGG-T--G-TACAGTT-ATT--T--C--AAACACT
gi|8 : TTTGA-AACTCGCTG-TAAAA--TT--A----GCTGGACATGCCGGGC-T-AA--C------TAC-TTGT----------AAAATTTGTTA------------GCCC-T-GCCCAGAGA-GCCACCT--A-GCCCGG---C---AA---AATTTATTTCTT--CGTATACT-AA----T-TATTC-TTTAA--TCTTATTCAAGCG---ATATGAA--------TTATAAAATTTATATTCATATCTT--CGAT--CCCAA-TCATAAAAATGT-------------A-A-CTTCATTT-ACCGAGA-------------T-------------TTAATACATTATAAA-TTT--------------------CTTTGC-A-AAG-AAATGTGTTCG-CCGCGAC-------------GCGTC--------TCGG---GC----GGTC-GGG-C--G-TACGTTTCATT--T--C--AAACACTG
gi|9 : gtGTTTGA-AACTCGCTG-TAAAA--TT--A----GCTGGACATGCAGGGC-T-AA--C------TAC-TTGT----------AAAAACTGTTA------------GCCC-T-G-CCCGAAA-GCCA-CT--A-GCCCTG---C---AA---TATAT-TTTGTT--GGTATACT-AA----T-TA-TC-TT--A--TCTTATTCAAACGACAATAGG-ATTAAGTTTT--TAAAACTTA-ATTCACATCTT--CG
gi|9 : gt-ATT-CACATCTTCG-TT-A---AAA-------------T-------------TTCTCTCAGCGGGAA-TTTTAACCCGTTCGGTCAAGCGTCTTTGC-A-AAG-AAATGTGTTCACCCGCGGCAGAA-TT--T-ATGTGTC--------TCGG---AC----GGTC-GGG-C--G-TACGGTT-ATT--T--C--AAACACTttaaaatttctctcagcgggaattttaacccgttcggtcaagcgtctttgcaaagaaatgtgttcacccgcggcagaatttatgtgtctcggacggtcgggcgtacggttatttcaaacact
22 sequences could not be aligned to this reference sequence:
Unaligned ( gi|2 ): CCACCCCACCAGATTAGAATTTTTTATCGATTTTTAAGCATTTTTGGCTTTCTTAATCAATTTATTATGCTTTCAAGAAATTTCGAGGGAAACCAACATTTCTACGTAAAATTGGATGTAAACCCCTCCATTGGGAAAAATCTATTTTATATGTTTTTAAAATGACATCAAACATAATATTCAAAAATATTGCCTTTATTTTACACATCTATTTCTTTCACTTTTCTAAAATTTCTATTAAATCTATAATTAATTTTCCCACAACTCTTTGTTCACAGTTCTTACTATATCATCACAGGAGTCGGCAATTTATCAAAATTAAAGTTAGATAGTTAGAGTTAGGCTATATGTGAATAATATCGGTAAAAATTCCTAGCACTGAGCTTCGCGGCCCCCACCGTAGCGACGCGAAAAATCCTAGCACTGAGCTTTCGCGAGCGAAGCCGTCGTACGCTCGCACGAAGCTTCAGTGCTTTAGGATTTTTTTACCGAATATTTTCCACATACTTCTACTTTATGTAAAATTGCCGACTCC
Unaligned ( gi|6 ): TTTTTTTTATTTTTAAGCATTTTTTGGGGCTTTTATTAATTAATCAATTTGAATTATGTCTTGTCAAGAAATTTCGAGAAAAACCAAACATTTCTACGGTAAATGAGGTACCCTCCATGTGGGGAAAAATCTAATTTTATCTGTTTTAAAAAAAAAAATGACATCAACCATTATAAAATTCAAATATAAGTTTGGCCTTTAATTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGAGTCGGGGG
Unaligned ( gi|13 ): GGGGCGGCAATTTTATCAATTAAGTAGAAGTAAGGCTATATGTGAAATATCGGTAAATCCTAAGCACTGAAGCTTCGCGAGCGTAGCGAGCGAAAAAATCCTAGCACTGAGCTTTCGCAGCGAAGCGCTCGCTACGCTCGCGAAAGCTCAGTGCTAGGATTTTTTACCGTATTTCACATACTTCTACCTTTATTGATAAAATTGCGACTCCCTGT
Unaligned ( gi|14 ): TGGCAAAATCAAGCCTAAATTTGGGAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAAAATATCGAAAACTTGTACGAATGCCTGTTTTCAACAAATAGTTACAAATTACTTTAAAAATTCACTGAAAAAATTGGTATAATTATAATAG
Unaligned ( gi|15 ): ACAGGAGTCGGCAATTTTATCAATAAAGTAGAAATATTTGAGAAATGGGCGGAAATTCTACCACTGAGCTTTGCGAGCGTGAAGCTCACTTATATGTTTGCGAATTAAGCTCACTGCTCGCAAAGCTCACTGTGCCAGTTAGAGTTTTCGCTTATTTCTCATATTTTATAATTGCCGACTCCTGTG
Unaligned ( gi|16 ): CATTGCAAAAAATGCAAGCTTAAATTGGGAGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGAAAACTTGTACAATGCGGTTTCAACCAACATGTACAAATTACTTTTAAAAAAATCACTGAAAAATGTATAATTAATAAAA
Unaligned ( gi|17 ): CACCCACCCAGAATTAGAATTTTTATCGATTTTTAAGCATTTTGGCTTTTATTAATCAATTTGAATTATGCTTGTCAAGAAATTTCGAGAAACCAACATTTCTACGTAAATGAGTACCCCTCCATTGGGAAAAATCTATTTTATCATGTTTTAAAATGACATCAAACATAATATTCAAA
Unaligned ( gi|18 ): ACAGGAGTCGGCAATTTTATCATAAAGTAGAAGTATGTGAAATATCGGTAAAAATCCTAGCACTGAGCTTCGCGAGCGTAGCGAGCGAACGCTCGCCGAAGCTCAGTGCTAGGATTTTTACCGATATTTCACATACTTCTACTTTATTTGATAAAATTGCCGACTCCT
Unaligned ( gi|19 ): CAGGAGTCGGCAATTTTATCAATAAAGTAGAAGTATGGTGAAATATCGGTAAAAATCCTAGCACTGAGCTTCGCGAGCGTAGCGAGCGAACGCTCGCGAAGCTCAGTGCTAGGATTTTTACCGATATTTCACATACTTCTACTTTATTGATAAAATTGCCGACTCCTG
Unaligned ( gi|20 ): GCAAGCTAAATTGGGAGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCGAAAACTTGTACAATGCTGTTTTCAACAACATGTACAAATTACTTAAAAAATCACTGAAAAATTGTATAATTAATAATAG
Unaligned ( gi|22 ): ACAGGAGTCGGCAATTTTATCAATAAAATAAAAATGTATGAGAAATGGGGGTGACTACCACTGAGCTTCACGAGCGTGAAGCTCAGTGTAGAGTCACCCTCATTTCTCATACATTTTAATTTATTGATAAAATTGCCGACTCCTGT
Unaligned ( gi|25 ): CACAGGAGTCGGCAATTTTATCAATAAAGACTTAAGTAGAAGTATGTGAGATATCGGTAAAAATCCTATCACTGAGCTTCGCGAGCTTAGCGGAACTAACTCTA
Unaligned ( gi|26 ): AAGCACAGAGTGGCAATTTTATCCAATAAATAAAAAAAGCTATGAGAATGGGGTAACTGCTACGCTGAAGCCTAGTGTAGAGTTACCAGCTCATTTCTC
Unaligned ( gi|32 ): CACAGGAGTCGGCAGTTTTCTCTGTCAAGGTCTACAATTATGAATATAAACAACTACTAAACTTCGCGAACG
Unaligned ( gi|34 ): AATCACAAGAGTCGGCAATTTATCAATAAACTTAAAGTAGAAAAATCTGTGAGAAATGGGGGGGGGGGG
Unaligned ( gi|35 ): AGAATCCGCATCCATTTCCCGTTTTACCAGCAAATGTCGTTTCTGCTTCACAAGAGTTAGATAACTC
Unaligned ( gi|36 ): ATATCATTTCACATCGGAAATGTTTCTTTTTTCAAGGCGTTTTCCTTTCCTCTAATCG
Unaligned ( gi|37 ): GGATATCTTCACATCGAATGTTTCTTTTTTCAAAAGGCGTTTTCCTTTCCTTTATCA
Unaligned ( gi|38 ): GGAGTCGGCAATTTATCAATAAAGTAGATATATGCGAGAAAGAGTTGCTAAATTTTA
Unaligned ( gi|39 ): CTACCACAGGGGTCGGCAATTTCTCAATAAACATTTTAGAGTAGAGAA
Unaligned ( gi|41 ): NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
Unaligned ( gi|42 ): CAGCTCTCCGCGCAAATTTATTGCGCTTACAC
Alignments
lowQualScore : 11111111111 111111111 111 11111111 11 4444444444444 666666666666666666666666666
lowQualScore : 3 3 44 44 7777 3 3 44 999999 3 55555555555 444444444 3 3 3 3 4 4 55 4 0 777 222 777 4 1 55 4 8888 4 4 4 55 55 6666 4 44444444 55 22 55 66 4 2222222222222 3 3 3 3 444444444444444444444444444 4 3 5 2 88888 33 2 99999999 444 5555 2 2 33 2 2 33 33 33
lowQualScore : . . .. .. .... . . .. ...... . ........... ......... . . . . . . .. . . ... ... ... . . .. . .... . . . .. .. .... . ........ .. .. .. .. . ............. . . . . ........................... . . . . ..... .. . ........ ... .... . . .. . . .. .. ..
lowQualScore : 6 3 66 66 1111 3 3 66 666666 3 88888888888 555555555 6 6 6 6 0 0 55 0 8 000 555 000 0 0 55 0 5555 0 0 0 55 55 7777 0 55555555 55 99 55 11 4 7777777777777 3 3 3 3 333333333333333333333333333 4 1 0 5 11111 44 5 11111111 444 3333 5 5 44 5 5 44 44 44
consensus : GTTTGA-AACTCGCTG-TAAAA--TT--A----GCTGGACATGCAGGGC-T-AA--C------TAC-TTGT-----------AAAATTT---------GTTA-GCCC-T-G-CCAGAGA-GCCA-CT--A-GCCCTG---C---AA---TATAT-TTTNTT--GGTATACT-AA----T-TA-TC-TT--A--TCTTATTCAAGCGATAATATG-A--------T--TAAAACTTATATTCACATCTT--CGAT--CCCAA-TCATAAAAATGTCGATGTT-ATT-CA-A-CTTCA-TT-ACCGATT-------------T-------------TTCTCTCAGCGGAAA-TTTTAACCCGTCCGGTCGGGCGTCTTTGC-A-AAG-AAATGTGTTCGCCCGCGGCAGAA-TT--T-ATGCGTC--------TCGG---GC----GGTC-GGG-C--G-TACGGTT-ATT--T--C--AAACACTG
Reference ( family-7250 ) : GTTTGA-AACTCGCTG-TAAAA--TT--A----GCTGGACATGCAGGGC-T-AA--C------TAC-TTGT-----------AAAATTT---------GTTA-GCCC-T-G-CCAGAGA-GCCA-CT--A-GCCCTG---C---AA---TATAT-TTTNTT--GGTATACT-AA----T-TA-TC-TT--A--TCTTATTCAAGCGATAATATG-A--------T--TAAAACTTATATTCACATCTT--CGAT--CCCAA-TCATAAAAATGTCGATGTT-ATT-CA-A-CTTCA-TT-ACCGATT-------------T-------------TTCTCTCAGCGGAAA-TTTTAACCCGTCCGGTCGGGCGTCTTTGC-A-AAG-AAATGTGTTCGCCCGCGGCAGAA-TT--T-ATGCGTC--------TCGG---GC----GGTC-GGG-C--G-TACGGTT-ATT--T--C--AAACACTG
gi|1 : GTTTGACAACTCGCTGCTAAAAGTTT--ATAAGACTGGACATGCATGGCGT-AATAC------TCC-TTGTTATTTTTTCTAAAAATTTTATTTCAGTGTGATGCCCATAG-CCAGAGAAGCCA-CTTAA-GCCCAGAGCC---AAAATTGTAT-TTTCTTTCGGTATACT-AA----T-TA-TCGTT--A--TCTTATTCAAGCGATA---TG-A--------T--AAAAATTTATATTCATATCTTTCCGATTACCCAATTCATAAAAATGT-AACCTT-----------CTCA-TT-ACCGATT-------------T-------------T
gi|1 : caacctttctacgtaaatgagtacacaccactccattgggaaaaaatctttatcatttaatagtgtttgtaaaatgagcgatccaaacatactattcaaaaagtatatgacctctcttatttgtacacatcgtattttctcttcactttttctaaccattttctctgattagaatacctatcaatacactctcccacaaactctttgtcagagtcattagcgtatttagatctccacacaggagtctaggcaagcattatatcaataaagtagaagcctaggcttattgtgggatatatatcgcggtaacaactccctagcactggaggtcttcgccgcgagacgtcacagccgagcggaaactcctagcactgaggcttcgcgaagcggagagcgctcgctaccgctcgcgaagctcacatagtgcctaggattttttaccttcgatattttcactatactatcttacttttacttagaattaaggccggagctccgtggttgaatatcattcacatcagaatgtttcctttttgtcacaaggcagttttcctttctttatcagtTCTTTGCCATAAT-GAATGT-TTCGGCCGCGAC-------------GCGTC--------TCGACACGCACAGGGTC-GGGACAGG-TACGGTT-ATTTGT--C--AAACACTattacatataaagagattctttgccataatgaatgtttcggccgcgacgcgtctcgacacgcacagggtcgggacaggtacggttatttgtcaaacactcgccttgacaaaaattgcaagcttaaatggcaggaaagaaaatacttgcgtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntacgaaaacttctgtaaatgctttgttagtttcaacaaacaggtgctacataattactctataaattaaatcacatgaaataaa
gi|10 : caacctttctacgtaaatgagtacacaccactccattgggaaaaaatctttatcatttaatagtgtttgtaaaatgagcgatccaaacatactattcaaaaagtatatgacctctcttatttgtacacatcgtattttctcttcactttttctaaccattttctctgattagaatacctatcaatacactctcccacaaactctttgtcagagtcattagcgtatttagatctccacacaggagtctaggcaagcattatatcaataaagtagaagcctaggcttattgtgggatatatatcgcggtaacaactccctagcactggaggtcttcgccgcgagacgtcacagccgagcggaaactcctagcactgaggcttcgcgaagcggagagcgctcgctaccgctcgcgaagctcacatagtgcctaggattttttaccttcgatattttcactatactatcttacttttacttagaattaaggccggagctccgtggttgaatatcattcacatcagaatgtttcctttttgtcacaaggcagttttcctttctttatcagtgtttgacaactcgctgctaaaagtttataagactggacatgcatggcgtaatactccttgttattttttctaaaaattttatttcagtgtgatgcccatagccagagaagccacttaagcccagagccaaaattgtattttctttcggtatactaattatcgttatcttattcaagcgatatgataaaaatttatattcatatctttccgattacccaattcataaaaatgtaaccttctcattaccgattttattacatataaagagatGTTTGA-AACTCGCTG-TAAAA--TTTAA----GCTGGACATGCAGGGC-TTAA--C------TACCTTGT-----------AAAATTT---------GTTA-GCCC-T-G-CCAGAGA-GCCA-CT--AAGCCCGG---CGAAAA---TTTAT-TTTCTT--CGTATACTTAA----T-TA-TC-TT--A--TCTTATTCAAGCGATA---TG-A--------T--TAAAATTTATATTCATATCTT---GAT--CCCAA-TCATAAAAATGT-------------A-A-ACTCA-TTTACCGATT-------------T-------------cgccttgacaaaaattgcaagcttaaatggcaggaaagaaaatacttgcgtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntacgaaaacttctgtaaatgctttgttagtttcaacaaacaggtgctacataattactctataaattaaatcacatgaaataaa
gi|10 : TCTTTGC-A-AAG-AAATGTGTTCGGCCGCGAC-------------GCGTC--------TCGG---GC----GGTC--GG-C--G-TACGGTT-ATT--T--C--AAACACTGaatacatataaatttctttgcaaagaaatgtgttcggccgcgacgcgtctcgggcggtcggcgtacggttatttcaaacactg
gi|11 : gtttgaaactcgctgtaaaatttaagctggacatgcagggcttaactaccttgtaaaatttgttagccctgccagagagccactaagcccggcgaaaatttattttcttcgtatacttaattatcttatcttattcaagcgatatgattaaaatttatattcatatcttgatcccaatcataaaaatgtaaactcatttaccgatttaatacatataaattTTGA-AACTCGCTG-TAAAA--TT--A----GCTGGACATGCAGGGC-T-AA--C------TAC-TTGT-----------AAAATTT---------GTTA-GCCC-T-G-CCAGAGA-GCCA-CT--A-GCCCGG---CAA-AA---TTTAT-TTTCTT--CGTATACT-AA----T-TA-TC-TT--A--TCTTATTCAAGCG---ATATG-A--------T--TAAAATTTATATTCATATCTT--CGAT--CCCAA-TCATAAAAATGT-------------A-A-CTTCA-TT-ACCGATT-------------T-------------
gi|11 : TCTTTGC-A-AAG-AAATGTGTTCGGCCGCGAC-------------GCGTC--------TCGG---GC----GGTC-GGG-C--G-TACGGTT-ATT--T--C--AAACACaatacatataaatttctttgcaaagaaatgtgttcggccgcgacgcgtctcgggcggtcgggcgtacggttatttcaaacac
gi|12 : ttgaaactcgctgtaaaattagctggacatgcagggctaactacttgtaaaatttgttagccctgccagagagccactagcccggcaaaatttattttcttcgtatactaattatcttatcttattcaagcgatatgattaaaatttatattcatatcttcgatcccaatcataaaaatgtaacttcattaccgatttaatacatataaattTATACC-AA----T-TA-TC-TT--AGATCTTATTCAAGCGATAATATG-A--------T--TAAAACTTA-ATTCACATCTT--CGAT--CCCAA-TCATAAAAATGTCGATGTT-ATTGCA-A-CTTCA-TT-ATCGATTTTATACATCTAAAT-------------TTCTCTCAGCGAAAA-ATTTAACCCGTCCGGTTGGGCGTCTTTGC-G-AAG-AAATGTGTTCGCCCGCGGCAGAA-TT--T-ATGCGTC-----------------------TC-GGG-C--G-TACGGCT-ATT--T--C--AAACACT
gi|21 : GATCTT-ATTGCA-A-CTTCA-TT-ACCGATT-------------TAATACATCTAAATTTCTCTCAGCAGAAA-TTTTAACCCATCCGGTCAGGCCTCTTTAC-A-AAG-AAATGTG--CACCTGCGGCAGAA-TT--T-ATGTGTC--------TTGG---GC----GGTC-AGG-C--A-TACGGTT-ATT--T--C--AAACAC
gi|23 : -CA-A-CTTCA-TT-ACCGGTA-------------T-------------T-----CAGCGGAAAAGTCTAACACGTCCGGTCGGGCGTCT
gi|24 : actaGTTTGA-AACTCGCTG-TAAAA--GG--A----GCTGGACATCCAGGGC-T-AG--C------TAC-TTGT-----------AAAATTT---------GTTA-GCCC-T-G-CCAGGGA-TCCA-CT--A-GCCCTA---C---AA---TATAT-TTTGTT--Ggtcttcacatgcaatatgtatagcaataaatgtatcctactctggc
gi|27 : gtGCGTCTTTGC-A-AAG-AAATGTGTTCGCCCGCAGCAGAAATT--T-ATGCGTC--------TCGG---GC----GGTC-GGG-C--G-TACGGTT-ATT--T--CATAAACACTG
gi|28 : t-AAG-AAATGTGTTCGCTCATGGCAGAA-TT--T-ATGCGTC--------TTGG---GC----GGTC-GGG-C--C-TACGGTT-ATT--T--C--AAACAC
gi|29 : cgattcctaccGTTTGA-AACTTGCTT-TAAAA--TT--A----GCTGGACATGCAGTGC-T-AA--CTACATGTAC-TTGT-----------AAAAATT---------GTTA-GCCC-T-G-CC
gi|3 : GTTTGA-AACTCGCTG-TAAAA--TT--A----GCTGGACATGCAGG-C-T-AA--C------TAC-TTGT-----------AATGTTT---------GT---GCCC-T-G-CCAGAGA-GCC---T--A-GCCCTG---C---AA---TATAT-TTTGTT--GG-ATACT-AAGTACTGTA-TC-TT--G--TCTTATTCAAGAGATAATATG-A--------T--TAAAACTTA-ATTCACATCTT--CGAT--CCCAA-TCATAAAAATGTCGATATT-ATTGCG-A-CTGCA-TT-ACCAATTTAATACATCTAAAT-------------TTCTCTCAGCGAAAA-TTTTAACCCGTCCGGTCGGGCGTCATTGC-A-ACG-AAATGTGTACGCCCGCAACAG-A-TG--T-ATGCGTC--------TCGG---GC----GGTC--GG-C--G-TACGGTT-ATT--T--C--AAACACTcg
gi|30 : gt-AAGTAGATATATCCCCCCGCCCCCGAAATT--T-ATGCGTC--------TCCG---GC-----TTCGGGG-C--G-TACAGTT-ATT--TTAT--AAACACT
gi|31 : -A-AAG-AAATTTATTTTCCTGCAGCAAAG-TT--TTATGCCTC--------TTGT---GC----GGTT-AGG-C--A-CATGTTT-ATC--T--T--AAACACT
gi|33 : -AAG-AAACGTGTT-GCCCGCGGCAGA--TT--T-ATGCGTC--------TCGG---AC----GGTC-GGG-C--GTTACGGTT-ATT--T--C--AAAAACT
gi|4 : GTTTGA-AACTCGCTC-TAAAT--TT--A----GCTGGACATGCAGAGT-T-AA--C------TAC-TTGT-----------AACATTC---------TTTA-GCCC-T-G-CCAGAGA-GCAA-CT--A-GCCCTG---C---AA---TATAT-TTTCTT--GGTATACT-AA----T-CA-TC-TT--A--TCT--------------TATG-A--------T--TAAAACTT-CATTCACATCTT--CGAT--CCCAA-TCATAAAAATGTCGATGCTAAAT-CA-A-CTTCA-TT-ACCGATTTAATACATCTAAAT-------------TTCTTTCAGCGGAAA-TTTTAA-ACGTCCGGTCTGGCGTCTTTGC-A-AAG-AAATGTGTTCGCCCGCAGCAGAA-TTTAT-ATGCGTCTCGGGCGGTCGG---GC----GGTC-GGG-C--G-TACGGTT-ATT--T--C--AAACA
gi|40 : tTCACTG-TAAAA--TT--A----TCTAGACATGCAAGGT-T-GA--T------TGT-TTAT-----------AAAA
gi|5 : tGTTTAA-AACTCACTG-TAAAA--TT--A----GCTGGACATGCAGGGC-T-AA--C------TAC-TTGT-----------AAAATTT---------GTTA-GCCC-T-G-CCAGAGA-GCCA-CT--A-GCACTG---C---AA---TATAT-TTTGTT--GGTATACT-AA----T-TA-TC-TT--A--TCTTATTCAAGCGATACTATG-A--------T--TAAAATTT-TATTCACATCTT--TGAT--CCCAA-TCATAGAAATGTCGATGTC-ATTGCA-A-TTTCA-TT-ACCGATT-------------T-------------TTCTCTCAGCGGAAG-TTTTAACCCGTCCGGTTGGGCGTCATTGC-ATAAG-AAATGTGTTCCTCCGCAATAGAA-TT--T-ATGCGTC--------TCGG---GC----GGTC-GGG-C--G-TACGGTT-ATT--T--C--AAACACTG
gi|7 : TTTGA-AACTCGCTG-TAAAA--TT--A----GCTGGACATGCAGGGC-C-AA--C------TAC-TTGT-----------AAAATTT---------GTTA-GCCC-T-G-CCAGAGA-GCCA-CT--A-GCCCTG---C---AA---TATAT-TTTGTT--GGTATACT-AA----T-TA-TC-TT--A--TCTTATTCAAGTGATAATATG-A--------T--TAAAACTTA-ATTCACATCTT--CGAT--CCCAA-TCATAAAAATGTCGATGTT-----------------------ATT-------------T-------------TTCTCTCAGCGGAAA-TTTTAACCCGTCCAGTCGGGCGTCTTTGC-A-AAG-AAATGTGTTCGCCCACAGCAGAA-TT--T-GTGCATC--------TCGG---GC----GCTC-GGG-T--G-TACAGTT-ATT--T--C--AAACACT
gi|8 : TTTGA-AACTCGCTG-TAAAA--TT--A----GCTGGACATGCCGGGC-T-AA--C------TAC-TTGT-----------AAAATTT---------GTTA-GCCC-T-GCCCAGAGA-GCCACCT--A-GCCCGG---C---AA---AATTTATTTCTT--CGTATACT-AA----T-TATTC-TTTAA--TCTTATTCAAGCG---ATATGAA--------TTATAAAATTTATATTCATATCTT--CGAT--CCCAA-TCATAAAAATGT-------------A-A-CTTCATTT-ACCGAGA-------------T-------------TTAATACATTATAAA-TTT--------------------CTTTGC-A-AAG-AAATGTGTTCG-CCGCGAC-------------GCGTC--------TCGG---GC----GGTC-GGG-C--G-TACGTTTCATT--T--C--AAACACTG
gi|9 : gtGTTTGA-AACTCGCTG-TAAAA--TT--A----GCTGGACATGCAGGGC-T-AA--C------TAC-TTGT-----------AAAAACT---------GTTA-GCCC-T-G-CCCGAAA-GCCA-CT--A-GCCCTG---C---AA---TATAT-TTTGTT--GGTATACT-AA----T-TA-TC-TT--A--TCTTATTCAAACGACAATAGG-ATTAAGTTTT--TAAAACTTA-ATTCACATCTT--CG
gi|9 : gt-ATT-CACATCTTCG-TT-A---AAA-------------T-------------TTCTCTCAGCGGGAA-TTTTAACCCGTTCGGTCAAGCGTCTTTGC-A-AAG-AAATGTGTTCACCCGCGGCAGAA-TT--T-ATGTGTC--------TCGG---AC----GGTC-GGG-C--G-TACGGTT-ATT--T--C--AAACACTttaaaatttctctcagcgggaattttaacccgttcggtcaagcgtctttgcaaagaaatgtgttcacccgcggcagaatttatgtgtctcggacggtcgggcgtacggttatttcaaacact
22 sequences could not be aligned to this reference sequence:
Unaligned ( gi|2 ): CCACCCCACCAGATTAGAATTTTTTATCGATTTTTAAGCATTTTTGGCTTTCTTAATCAATTTATTATGCTTTCAAGAAATTTCGAGGGAAACCAACATTTCTACGTAAAATTGGATGTAAACCCCTCCATTGGGAAAAATCTATTTTATATGTTTTTAAAATGACATCAAACATAATATTCAAAAATATTGCCTTTATTTTACACATCTATTTCTTTCACTTTTCTAAAATTTCTATTAAATCTATAATTAATTTTCCCACAACTCTTTGTTCACAGTTCTTACTATATCATCACAGGAGTCGGCAATTTATCAAAATTAAAGTTAGATAGTTAGAGTTAGGCTATATGTGAATAATATCGGTAAAAATTCCTAGCACTGAGCTTCGCGGCCCCCACCGTAGCGACGCGAAAAATCCTAGCACTGAGCTTTCGCGAGCGAAGCCGTCGTACGCTCGCACGAAGCTTCAGTGCTTTAGGATTTTTTTACCGAATATTTTCCACATACTTCTACTTTATGTAAAATTGCCGACTCC
Unaligned ( gi|6 ): TTTTTTTTATTTTTAAGCATTTTTTGGGGCTTTTATTAATTAATCAATTTGAATTATGTCTTGTCAAGAAATTTCGAGAAAAACCAAACATTTCTACGGTAAATGAGGTACCCTCCATGTGGGGAAAAATCTAATTTTATCTGTTTTAAAAAAAAAAATGACATCAACCATTATAAAATTCAAATATAAGTTTGGCCTTTAATTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGAGTCGGGGG
Unaligned ( gi|13 ): GGGGCGGCAATTTTATCAATTAAGTAGAAGTAAGGCTATATGTGAAATATCGGTAAATCCTAAGCACTGAAGCTTCGCGAGCGTAGCGAGCGAAAAAATCCTAGCACTGAGCTTTCGCAGCGAAGCGCTCGCTACGCTCGCGAAAGCTCAGTGCTAGGATTTTTTACCGTATTTCACATACTTCTACCTTTATTGATAAAATTGCGACTCCCTGT
Unaligned ( gi|14 ): TGGCAAAATCAAGCCTAAATTTGGGAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAAAATATCGAAAACTTGTACGAATGCCTGTTTTCAACAAATAGTTACAAATTACTTTAAAAATTCACTGAAAAAATTGGTATAATTATAATAG
Unaligned ( gi|15 ): ACAGGAGTCGGCAATTTTATCAATAAAGTAGAAATATTTGAGAAATGGGCGGAAATTCTACCACTGAGCTTTGCGAGCGTGAAGCTCACTTATATGTTTGCGAATTAAGCTCACTGCTCGCAAAGCTCACTGTGCCAGTTAGAGTTTTCGCTTATTTCTCATATTTTATAATTGCCGACTCCTGTG
Unaligned ( gi|16 ): CATTGCAAAAAATGCAAGCTTAAATTGGGAGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGAAAACTTGTACAATGCGGTTTCAACCAACATGTACAAATTACTTTTAAAAAAATCACTGAAAAATGTATAATTAATAAAA
Unaligned ( gi|17 ): CACCCACCCAGAATTAGAATTTTTATCGATTTTTAAGCATTTTGGCTTTTATTAATCAATTTGAATTATGCTTGTCAAGAAATTTCGAGAAACCAACATTTCTACGTAAATGAGTACCCCTCCATTGGGAAAAATCTATTTTATCATGTTTTAAAATGACATCAAACATAATATTCAAA
Unaligned ( gi|18 ): ACAGGAGTCGGCAATTTTATCATAAAGTAGAAGTATGTGAAATATCGGTAAAAATCCTAGCACTGAGCTTCGCGAGCGTAGCGAGCGAACGCTCGCCGAAGCTCAGTGCTAGGATTTTTACCGATATTTCACATACTTCTACTTTATTTGATAAAATTGCCGACTCCT
Unaligned ( gi|19 ): CAGGAGTCGGCAATTTTATCAATAAAGTAGAAGTATGGTGAAATATCGGTAAAAATCCTAGCACTGAGCTTCGCGAGCGTAGCGAGCGAACGCTCGCGAAGCTCAGTGCTAGGATTTTTACCGATATTTCACATACTTCTACTTTATTGATAAAATTGCCGACTCCTG
Unaligned ( gi|20 ): GCAAGCTAAATTGGGAGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCGAAAACTTGTACAATGCTGTTTTCAACAACATGTACAAATTACTTAAAAAATCACTGAAAAATTGTATAATTAATAATAG
Unaligned ( gi|22 ): ACAGGAGTCGGCAATTTTATCAATAAAATAAAAATGTATGAGAAATGGGGGTGACTACCACTGAGCTTCACGAGCGTGAAGCTCAGTGTAGAGTCACCCTCATTTCTCATACATTTTAATTTATTGATAAAATTGCCGACTCCTGT
Unaligned ( gi|25 ): CACAGGAGTCGGCAATTTTATCAATAAAGACTTAAGTAGAAGTATGTGAGATATCGGTAAAAATCCTATCACTGAGCTTCGCGAGCTTAGCGGAACTAACTCTA
Unaligned ( gi|26 ): AAGCACAGAGTGGCAATTTTATCCAATAAATAAAAAAAGCTATGAGAATGGGGTAACTGCTACGCTGAAGCCTAGTGTAGAGTTACCAGCTCATTTCTC
Unaligned ( gi|32 ): CACAGGAGTCGGCAGTTTTCTCTGTCAAGGTCTACAATTATGAATATAAACAACTACTAAACTTCGCGAACG
Unaligned ( gi|34 ): AATCACAAGAGTCGGCAATTTATCAATAAACTTAAAGTAGAAAAATCTGTGAGAAATGGGGGGGGGGGG
Unaligned ( gi|35 ): AGAATCCGCATCCATTTCCCGTTTTACCAGCAAATGTCGTTTCTGCTTCACAAGAGTTAGATAACTC
Unaligned ( gi|36 ): ATATCATTTCACATCGGAAATGTTTCTTTTTTCAAGGCGTTTTCCTTTCCTCTAATCG
Unaligned ( gi|37 ): GGATATCTTCACATCGAATGTTTCTTTTTTCAAAAGGCGTTTTCCTTTCCTTTATCA
Unaligned ( gi|38 ): GGAGTCGGCAATTTATCAATAAAGTAGATATATGCGAGAAAGAGTTGCTAAATTTTA
Unaligned ( gi|39 ): CTACCACAGGGGTCGGCAATTTCTCAATAAACATTTTAGAGTAGAGAA
Unaligned ( gi|41 ): NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
Unaligned ( gi|42 ): CAGCTCTCCGCGCAAATTTATTGCGCTTACAC
Alignments
lowQualScore : 11111111111 111111111 111 11111111 11 4444444444444 666666666666666666666666666
lowQualScore : 3 3 44 44 7777 3 3 44 999999 3 55555555555 444444444 3 3 3 3 4 4 55 4 0 777 222 777 4 1 55 4 8888 4 4 4 55 55 6666 4 44444444 55 22 55 66 4 2222222222222 3 3 3 3 444444444444444444444444444 4 3 5 2 88888 33 2 99999999 444 5555 2 2 33 2 2 33 33 33
lowQualScore : . . .. .. .... . . .. ...... . ........... ......... . . . . . . .. . . ... ... ... . . .. . .... . . . .. .. .... . ........ .. .. .. .. . ............. . . . . ........................... . . . . ..... .. . ........ ... .... . . .. . . .. .. ..
lowQualScore : 6 3 66 66 1111 3 3 66 666666 3 88888888888 555555555 6 6 6 6 0 0 55 0 8 000 555 000 0 0 55 0 5555 0 0 0 55 55 7777 0 55555555 55 99 55 11 4 7777777777777 3 3 3 3 333333333333333333333333333 4 1 0 5 11111 44 5 11111111 444 3333 5 5 44 5 5 44 44 44
consensus : GTTTGA-AACTCGCTG-TAAAA--TT--A----GCTGGACATGCAGGGC-T-AA--C------TAC-TTGT-----------AAAATTT---------GTTA-GCCC-T-G-CCAGAGA-GCCA-CT--A-GCCCTG---C---AA---TATAT-TTTNTT--GGTATACT-AA----T-TA-TC-TT--A--TCTTATTCAAGCGATAATATG-A--------T--TAAAACTTATATTCACATCTT--CGAT--CCCAA-TCATAAAAATGTCGATGTT-ATT-CA-A-CTTCA-TT-ACCGATT-------------T-------------TTCTCTCAGCGGAAA-TTTTAACCCGTCCGGTCGGGCGTCTTTGC-A-AAG-AAATGTGTTCGCCCGCGGCAGAA-TT--T-ATGCGTC--------TCGG---GC----GGTC-GGG-C--G-TACGGTT-ATT--T--C--AAACACTG
Reference ( family-7250 ) : GTTTGA-AACTCGCTG-TAAAA--TT--A----GCTGGACATGCAGGGC-T-AA--C------TAC-TTGT-----------AAAATTT---------GTTA-GCCC-T-G-CCAGAGA-GCCA-CT--A-GCCCTG---C---AA---TATAT-TTTNTT--GGTATACT-AA----T-TA-TC-TT--A--TCTTATTCAAGCGATAATATG-A--------T--TAAAACTTATATTCACATCTT--CGAT--CCCAA-TCATAAAAATGTCGATGTT-ATT-CA-A-CTTCA-TT-ACCGATT-------------T-------------TTCTCTCAGCGGAAA-TTTTAACCCGTCCGGTCGGGCGTCTTTGC-A-AAG-AAATGTGTTCGCCCGCGGCAGAA-TT--T-ATGCGTC--------TCGG---GC----GGTC-GGG-C--G-TACGGTT-ATT--T--C--AAACACTG
gi|1 : GTTTGACAACTCGCTGCTAAAAGTTT--ATAAGACTGGACATGCATGGCGT-AATAC------TCC-TTGTTATTTTTTCTAAAAATTTTATTTCAGTGTGATGCCCATAG-CCAGAGAAGCCA-CTTAA-GCCCAGAGCC---AAAATTGTAT-TTTCTTTCGGTATACT-AA----T-TA-TCGTT--A--TCTTATTCAAGCGATA---TG-A--------T--AAAAATTTATATTCATATCTTTCCGATTACCCAATTCATAAAAATGT-AACCTT-----------CTCA-TT-ACCGATT-------------T-------------T
gi|1 : caacctttctacgtaaatgagtacacaccactccattgggaaaaaatctttatcatttaatagtgtttgtaaaatgagcgatccaaacatactattcaaaaagtatatgacctctcttatttgtacacatcgtattttctcttcactttttctaaccattttctctgattagaatacctatcaatacactctcccacaaactctttgtcagagtcattagcgtatttagatctccacacaggagtctaggcaagcattatatcaataaagtagaagcctaggcttattgtgggatatatatcgcggtaacaactccctagcactggaggtcttcgccgcgagacgtcacagccgagcggaaactcctagcactgaggcttcgcgaagcggagagcgctcgctaccgctcgcgaagctcacatagtgcctaggattttttaccttcgatattttcactatactatcttacttttacttagaattaaggccggagctccgtggttgaatatcattcacatcagaatgtttcctttttgtcacaaggcagttttcctttctttatcagtTCTTTGCCATAAT-GAATGT-TTCGGCCGCGAC-------------GCGTC--------TCGACACGCACAGGGTC-GGGACAGG-TACGGTT-ATTTGT--C--AAACACTattacatataaagagattctttgccataatgaatgtttcggccgcgacgcgtctcgacacgcacagggtcgggacaggtacggttatttgtcaaacactcgccttgacaaaaattgcaagcttaaatggcaggaaagaaaatacttgcgtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntacgaaaacttctgtaaatgctttgttagtttcaacaaacaggtgctacataattactctataaattaaatcacatgaaataaa
gi|10 : caacctttctacgtaaatgagtacacaccactccattgggaaaaaatctttatcatttaatagtgtttgtaaaatgagcgatccaaacatactattcaaaaagtatatgacctctcttatttgtacacatcgtattttctcttcactttttctaaccattttctctgattagaatacctatcaatacactctcccacaaactctttgtcagagtcattagcgtatttagatctccacacaggagtctaggcaagcattatatcaataaagtagaagcctaggcttattgtgggatatatatcgcggtaacaactccctagcactggaggtcttcgccgcgagacgtcacagccgagcggaaactcctagcactgaggcttcgcgaagcggagagcgctcgctaccgctcgcgaagctcacatagtgcctaggattttttaccttcgatattttcactatactatcttacttttacttagaattaaggccggagctccgtggttgaatatcattcacatcagaatgtttcctttttgtcacaaggcagttttcctttctttatcagtgtttgacaactcgctgctaaaagtttataagactggacatgcatggcgtaatactccttgttattttttctaaaaattttatttcagtgtgatgcccatagccagagaagccacttaagcccagagccaaaattgtattttctttcggtatactaattatcgttatcttattcaagcgatatgataaaaatttatattcatatctttccgattacccaattcataaaaatgtaaccttctcattaccgattttattacatataaagagatGTTTGA-AACTCGCTG-TAAAA--TTTAA----GCTGGACATGCAGGGC-TTAA--C------TACCTTGT-----------AAAATTT---------GTTA-GCCC-T-G-CCAGAGA-GCCA-CT--AAGCCCGG---CGAAAA---TTTAT-TTTCTT--CGTATACTTAA----T-TA-TC-TT--A--TCTTATTCAAGCGATA---TG-A--------T--TAAAATTTATATTCATATCTT---GAT--CCCAA-TCATAAAAATGT-------------A-A-ACTCA-TTTACCGATT-------------T-------------cgccttgacaaaaattgcaagcttaaatggcaggaaagaaaatacttgcgtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntacgaaaacttctgtaaatgctttgttagtttcaacaaacaggtgctacataattactctataaattaaatcacatgaaataaa
gi|10 : TCTTTGC-A-AAG-AAATGTGTTCGGCCGCGAC-------------GCGTC--------TCGG---GC----GGTC--GG-C--G-TACGGTT-ATT--T--C--AAACACTGaatacatataaatttctttgcaaagaaatgtgttcggccgcgacgcgtctcgggcggtcggcgtacggttatttcaaacactg
gi|11 : gtttgaaactcgctgtaaaatttaagctggacatgcagggcttaactaccttgtaaaatttgttagccctgccagagagccactaagcccggcgaaaatttattttcttcgtatacttaattatcttatcttattcaagcgatatgattaaaatttatattcatatcttgatcccaatcataaaaatgtaaactcatttaccgatttaatacatataaattTTGA-AACTCGCTG-TAAAA--TT--A----GCTGGACATGCAGGGC-T-AA--C------TAC-TTGT-----------AAAATTT---------GTTA-GCCC-T-G-CCAGAGA-GCCA-CT--A-GCCCGG---CAA-AA---TTTAT-TTTCTT--CGTATACT-AA----T-TA-TC-TT--A--TCTTATTCAAGCG---ATATG-A--------T--TAAAATTTATATTCATATCTT--CGAT--CCCAA-TCATAAAAATGT-------------A-A-CTTCA-TT-ACCGATT-------------T-------------
gi|11 : TCTTTGC-A-AAG-AAATGTGTTCGGCCGCGAC-------------GCGTC--------TCGG---GC----GGTC-GGG-C--G-TACGGTT-ATT--T--C--AAACACaatacatataaatttctttgcaaagaaatgtgttcggccgcgacgcgtctcgggcggtcgggcgtacggttatttcaaacac
gi|12 : ttgaaactcgctgtaaaattagctggacatgcagggctaactacttgtaaaatttgttagccctgccagagagccactagcccggcaaaatttattttcttcgtatactaattatcttatcttattcaagcgatatgattaaaatttatattcatatcttcgatcccaatcataaaaatgtaacttcattaccgatttaatacatataaattTATACC-AA----T-TA-TC-TT--AGATCTTATTCAAGCGATAATATG-A--------T--TAAAACTTA-ATTCACATCTT--CGAT--CCCAA-TCATAAAAATGTCGATGTT-ATTGCA-A-CTTCA-TT-ATCGATTTTATACATCTAAAT-------------TTCTCTCAGCGAAAA-ATTTAACCCGTCCGGTTGGGCGTCTTTGC-G-AAG-AAATGTGTTCGCCCGCGGCAGAA-TT--T-ATGCGTC-----------------------TC-GGG-C--G-TACGGCT-ATT--T--C--AAACACT
gi|21 : GATCTT-ATTGCA-A-CTTCA-TT-ACCGATT-------------TAATACATCTAAATTTCTCTCAGCAGAAA-TTTTAACCCATCCGGTCAGGCCTCTTTAC-A-AAG-AAATGTG--CACCTGCGGCAGAA-TT--T-ATGTGTC--------TTGG---GC----GGTC-AGG-C--A-TACGGTT-ATT--T--C--AAACAC
gi|23 : -CA-A-CTTCA-TT-ACCGGTA-------------T-------------T-----CAGCGGAAAAGTCTAACACGTCCGGTCGGGCGTCT
gi|24 : actaGTTTGA-AACTCGCTG-TAAAA--GG--A----GCTGGACATCCAGGGC-T-AG--C------TAC-TTGT-----------AAAATTT---------GTTA-GCCC-T-G-CCAGGGA-TCCA-CT--A-GCCCTA---C---AA---TATAT-TTTGTT--Ggtcttcacatgcaatatgtatagcaataaatgtatcctactctggc
gi|27 : gtGCGTCTTTGC-A-AAG-AAATGTGTTCGCCCGCAGCAGAAATT--T-ATGCGTC--------TCGG---GC----GGTC-GGG-C--G-TACGGTT-ATT--T--CATAAACACTG
gi|28 : t-AAG-AAATGTGTTCGCTCATGGCAGAA-TT--T-ATGCGTC--------TTGG---GC----GGTC-GGG-C--C-TACGGTT-ATT--T--C--AAACAC
gi|29 : cgattcctaccGTTTGA-AACTTGCTT-TAAAA--TT--A----GCTGGACATGCAGTGC-T-AA--CTACATGTAC-TTGT-----------AAAAATT---------GTTA-GCCC-T-G-CC
gi|3 : GTTTGA-AACTCGCTG-TAAAA--TT--A----GCTGGACATGCAGG-C-T-AA--C------TAC-TTGT-----------AATGTTT---------GT---GCCC-T-G-CCAGAGA-GCC---T--A-GCCCTG---C---AA---TATAT-TTTGTT--GG-ATACT-AAGTACTGTA-TC-TT--G--TCTTATTCAAGAGATAATATG-A--------T--TAAAACTTA-ATTCACATCTT--CGAT--CCCAA-TCATAAAAATGTCGATATT-ATTGCG-A-CTGCA-TT-ACCAATTTAATACATCTAAAT-------------TTCTCTCAGCGAAAA-TTTTAACCCGTCCGGTCGGGCGTCATTGC-A-ACG-AAATGTGTACGCCCGCAACAG-A-TG--T-ATGCGTC--------TCGG---GC----GGTC--GG-C--G-TACGGTT-ATT--T--C--AAACACTcg
gi|30 : gt-AAGTAGATATATCCCCCCGCCCCCGAAATT--T-ATGCGTC--------TCCG---GC-----TTCGGGG-C--G-TACAGTT-ATT--TTAT--AAACACT
gi|31 : -A-AAG-AAATTTATTTTCCTGCAGCAAAG-TT--TTATGCCTC--------TTGT---GC----GGTT-AGG-C--A-CATGTTT-ATC--T--T--AAACACT
gi|33 : -AAG-AAACGTGTT-GCCCGCGGCAGA--TT--T-ATGCGTC--------TCGG---AC----GGTC-GGG-C--GTTACGGTT-ATT--T--C--AAAAACT
gi|4 : GTTTGA-AACTCGCTC-TAAAT--TT--A----GCTGGACATGCAGAGT-T-AA--C------TAC-TTGT-----------AACATTC---------TTTA-GCCC-T-G-CCAGAGA-GCAA-CT--A-GCCCTG---C---AA---TATAT-TTTCTT--GGTATACT-AA----T-CA-TC-TT--A--TCT--------------TATG-A--------T--TAAAACTT-CATTCACATCTT--CGAT--CCCAA-TCATAAAAATGTCGATGCTAAAT-CA-A-CTTCA-TT-ACCGATTTAATACATCTAAAT-------------TTCTTTCAGCGGAAA-TTTTAA-ACGTCCGGTCTGGCGTCTTTGC-A-AAG-AAATGTGTTCGCCCGCAGCAGAA-TTTAT-ATGCGTCTCGGGCGGTCGG---GC----GGTC-GGG-C--G-TACGGTT-ATT--T--C--AAACA
gi|40 : tTCACTG-TAAAA--TT--A----TCTAGACATGCAAGGT-T-GA--T------TGT-TTAT-----------AAAA
gi|5 : tGTTTAA-AACTCACTG-TAAAA--TT--A----GCTGGACATGCAGGGC-T-AA--C------TAC-TTGT-----------AAAATTT---------GTTA-GCCC-T-G-CCAGAGA-GCCA-CT--A-GCACTG---C---AA---TATAT-TTTGTT--GGTATACT-AA----T-TA-TC-TT--A--TCTTATTCAAGCGATACTATG-A--------T--TAAAATTT-TATTCACATCTT--TGAT--CCCAA-TCATAGAAATGTCGATGTC-ATTGCA-A-TTTCA-TT-ACCGATT-------------T-------------TTCTCTCAGCGGAAG-TTTTAACCCGTCCGGTTGGGCGTCATTGC-ATAAG-AAATGTGTTCCTCCGCAATAGAA-TT--T-ATGCGTC--------TCGG---GC----GGTC-GGG-C--G-TACGGTT-ATT--T--C--AAACACTG
gi|7 : TTTGA-AACTCGCTG-TAAAA--TT--A----GCTGGACATGCAGGGC-C-AA--C------TAC-TTGT-----------AAAATTT---------GTTA-GCCC-T-G-CCAGAGA-GCCA-CT--A-GCCCTG---C---AA---TATAT-TTTGTT--GGTATACT-AA----T-TA-TC-TT--A--TCTTATTCAAGTGATAATATG-A--------T--TAAAACTTA-ATTCACATCTT--CGAT--CCCAA-TCATAAAAATGTCGATGTT-----------------------ATT-------------T-------------TTCTCTCAGCGGAAA-TTTTAACCCGTCCAGTCGGGCGTCTTTGC-A-AAG-AAATGTGTTCGCCCACAGCAGAA-TT--T-GTGCATC--------TCGG---GC----GCTC-GGG-T--G-TACAGTT-ATT--T--C--AAACACT
gi|8 : TTTGA-AACTCGCTG-TAAAA--TT--A----GCTGGACATGCCGGGC-T-AA--C------TAC-TTGT-----------AAAATTT---------GTTA-GCCC-T-GCCCAGAGA-GCCACCT--A-GCCCGG---C---AA---AATTTATTTCTT--CGTATACT-AA----T-TATTC-TTTAA--TCTTATTCAAGCG---ATATGAA--------TTATAAAATTTATATTCATATCTT--CGAT--CCCAA-TCATAAAAATGT-------------A-A-CTTCATTT-ACCGAGA-------------T-------------TTAATACATTATAAA-TTT--------------------CTTTGC-A-AAG-AAATGTGTTCG-CCGCGAC-------------GCGTC--------TCGG---GC----GGTC-GGG-C--G-TACGTTTCATT--T--C--AAACACTG
gi|9 : gtGTTTGA-AACTCGCTG-TAAAA--TT--A----GCTGGACATGCAGGGC-T-AA--C------TAC-TTGT-----------AAAAACT---------GTTA-GCCC-T-G-CCCGAAA-GCCA-CT--A-GCCCTG---C---AA---TATAT-TTTGTT--GGTATACT-AA----T-TA-TC-TT--A--TCTTATTCAAACGACAATAGG-ATTAAGTTTT--TAAAACTTA-ATTCACATCTT--CG
gi|9 : gt-ATT-CACATCTTCG-TT-A---AAA-------------T-------------TTCTCTCAGCGGGAA-TTTTAACCCGTTCGGTCAAGCGTCTTTGC-A-AAG-AAATGTGTTCACCCGCGGCAGAA-TT--T-ATGTGTC--------TCGG---AC----GGTC-GGG-C--G-TACGGTT-ATT--T--C--AAACACTttaaaatttctctcagcgggaattttaacccgttcggtcaagcgtctttgcaaagaaatgtgttcacccgcggcagaatttatgtgtctcggacggtcgggcgtacggttatttcaaacact
blockSeqs : . . . TA . . T . TACATG C . . . . . C . C . A . GAA . A C . T GTAC G T . TA GA ATAA A TTAAGTTT TA AT . . . CGATGTTATTGC C T T T TTATACATCTAAAT A . T T AGAAA TA T TCGGGCGG . . G . . T C . TA AT
blockSeqs : . . . . . . . . . . . . . . . . . . . . . AA . . C . . . . . . . . ATAA . . . AT . . . CGATATTATTGC . . . . TAATACATCTAAAT . . . . CGAAA . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . . . G . . . . . . . . ATAC . . . AT . . . CGATGCTAAATC . . . . TAATACATCTAAAT . . . . AGAA . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . . . G . . . . . . . . ATAA . . . A . . . CGATGTCATTGC . . . . TAATACATCTAAAT . . . . AGAA . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . . . C . . . . . . . . ACAA . . . A . . . CGATGTT . . . . T . . . . AGAA . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . . . G . . . . . . . . ATA . . . C . . . . . . . . T . . . . AAAG . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . . . G . . . . . . . . A . . . T . . . . . . . . T . . . . AGAA . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . . . C . . . . . . . . A . . . A . . . . . . . . T . . . . AGAA . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . . . G . . . . . . . . . . . . A . . . . . T . . . AGAA . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . T . . . AGAA . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . T . . . AGA . . . . . . . . . . . . .
blockSeqs : . . . AGA . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . .
blockSeqCons : ** **** ** *********** ********* ** *** *** ** ATAA A* ** ** CGATGTTAC**** AGAA* *** **** ** **
originalCons : GTTTGA-AACTCGCTG-TAAAA--TT--A----GCTGGACATGCAGGGC-T-AA--C------TAC-TTGT-----------AAAATTT---------GTTA-GCCC-T-G-CCAGAGA-GCCA-CT--A-GCCCTG---C---AA---TATAT-TTTNTT--GGTATACT-AA----T-TA-TC-TT--A--TCTTATTCAAGCGATAATATG-A--------T--TAAAACTTATATTCACATCTT--CGAT--CCCAA-TCATAAAAATGTCGATGTT-ATT-CA-A-CTTCA-TT-ACCGATT-------------T-------------TTCTCTCAGCGGAAA-TTTTAACCCGTCCGGTCGGGCGTCTTTGC-A-AAG-AAATGTGTTCGCCCGCGGCAGAA-TT--T-ATGCGTC--------TCGG---GC----GGTC-GGG-C--G-TACGGTT-ATT--T--C--AAACACTG
finalCons : GTTTGA-AACTCGCTG-TAAAA--TT--A----GCTGGACATGCAGGGC-T-AA--C------TAC-TTGT-----------AAAATTT---------GTTA-GCCC-T-G-CCAGAGA-GCCA-CT--A-GCCCTG---C---AA---TATAT-TTTNTT--GGTATACT-AA----T-TA-TC-TT--A--TCTTATTCAAGCGATAATATG-A--------T--TAAAACTTA-ATTCACATCTT--CGAT--CCCAA-TCATAAAAATGTCGATGTTAC----A-A-CTTCA-TT-ACCGATT-------------T-------------TTCTCTCAGCGGAAA-TTTTAACCCGTCCGGTCGGGCGTCTTTGC-A-AAG-AAATGTGTTCGCCCGCGGCAGAA-TT--T-ATGCGTC--------TCGG---GC----GGTC-GGG-C--G-TACGGTT-ATT--T--C--AAACACTG
22 sequences could not be aligned to this reference sequence:
Unaligned ( gi|2 ): CCACCCCACCAGATTAGAATTTTTTATCGATTTTTAAGCATTTTTGGCTTTCTTAATCAATTTATTATGCTTTCAAGAAATTTCGAGGGAAACCAACATTTCTACGTAAAATTGGATGTAAACCCCTCCATTGGGAAAAATCTATTTTATATGTTTTTAAAATGACATCAAACATAATATTCAAAAATATTGCCTTTATTTTACACATCTATTTCTTTCACTTTTCTAAAATTTCTATTAAATCTATAATTAATTTTCCCACAACTCTTTGTTCACAGTTCTTACTATATCATCACAGGAGTCGGCAATTTATCAAAATTAAAGTTAGATAGTTAGAGTTAGGCTATATGTGAATAATATCGGTAAAAATTCCTAGCACTGAGCTTCGCGGCCCCCACCGTAGCGACGCGAAAAATCCTAGCACTGAGCTTTCGCGAGCGAAGCCGTCGTACGCTCGCACGAAGCTTCAGTGCTTTAGGATTTTTTTACCGAATATTTTCCACATACTTCTACTTTATGTAAAATTGCCGACTCC
Unaligned ( gi|6 ): TTTTTTTTATTTTTAAGCATTTTTTGGGGCTTTTATTAATTAATCAATTTGAATTATGTCTTGTCAAGAAATTTCGAGAAAAACCAAACATTTCTACGGTAAATGAGGTACCCTCCATGTGGGGAAAAATCTAATTTTATCTGTTTTAAAAAAAAAAATGACATCAACCATTATAAAATTCAAATATAAGTTTGGCCTTTAATTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGAGTCGGGGG
Unaligned ( gi|13 ): GGGGCGGCAATTTTATCAATTAAGTAGAAGTAAGGCTATATGTGAAATATCGGTAAATCCTAAGCACTGAAGCTTCGCGAGCGTAGCGAGCGAAAAAATCCTAGCACTGAGCTTTCGCAGCGAAGCGCTCGCTACGCTCGCGAAAGCTCAGTGCTAGGATTTTTTACCGTATTTCACATACTTCTACCTTTATTGATAAAATTGCGACTCCCTGT
Unaligned ( gi|14 ): TGGCAAAATCAAGCCTAAATTTGGGAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAAAATATCGAAAACTTGTACGAATGCCTGTTTTCAACAAATAGTTACAAATTACTTTAAAAATTCACTGAAAAAATTGGTATAATTATAATAG
Unaligned ( gi|15 ): ACAGGAGTCGGCAATTTTATCAATAAAGTAGAAATATTTGAGAAATGGGCGGAAATTCTACCACTGAGCTTTGCGAGCGTGAAGCTCACTTATATGTTTGCGAATTAAGCTCACTGCTCGCAAAGCTCACTGTGCCAGTTAGAGTTTTCGCTTATTTCTCATATTTTATAATTGCCGACTCCTGTG
Unaligned ( gi|16 ): CATTGCAAAAAATGCAAGCTTAAATTGGGAGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGAAAACTTGTACAATGCGGTTTCAACCAACATGTACAAATTACTTTTAAAAAAATCACTGAAAAATGTATAATTAATAAAA
Unaligned ( gi|17 ): CACCCACCCAGAATTAGAATTTTTATCGATTTTTAAGCATTTTGGCTTTTATTAATCAATTTGAATTATGCTTGTCAAGAAATTTCGAGAAACCAACATTTCTACGTAAATGAGTACCCCTCCATTGGGAAAAATCTATTTTATCATGTTTTAAAATGACATCAAACATAATATTCAAA
Unaligned ( gi|18 ): ACAGGAGTCGGCAATTTTATCATAAAGTAGAAGTATGTGAAATATCGGTAAAAATCCTAGCACTGAGCTTCGCGAGCGTAGCGAGCGAACGCTCGCCGAAGCTCAGTGCTAGGATTTTTACCGATATTTCACATACTTCTACTTTATTTGATAAAATTGCCGACTCCT
Unaligned ( gi|19 ): CAGGAGTCGGCAATTTTATCAATAAAGTAGAAGTATGGTGAAATATCGGTAAAAATCCTAGCACTGAGCTTCGCGAGCGTAGCGAGCGAACGCTCGCGAAGCTCAGTGCTAGGATTTTTACCGATATTTCACATACTTCTACTTTATTGATAAAATTGCCGACTCCTG
Unaligned ( gi|20 ): GCAAGCTAAATTGGGAGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCGAAAACTTGTACAATGCTGTTTTCAACAACATGTACAAATTACTTAAAAAATCACTGAAAAATTGTATAATTAATAATAG
Unaligned ( gi|22 ): ACAGGAGTCGGCAATTTTATCAATAAAATAAAAATGTATGAGAAATGGGGGTGACTACCACTGAGCTTCACGAGCGTGAAGCTCAGTGTAGAGTCACCCTCATTTCTCATACATTTTAATTTATTGATAAAATTGCCGACTCCTGT
Unaligned ( gi|25 ): CACAGGAGTCGGCAATTTTATCAATAAAGACTTAAGTAGAAGTATGTGAGATATCGGTAAAAATCCTATCACTGAGCTTCGCGAGCTTAGCGGAACTAACTCTA
Unaligned ( gi|26 ): AAGCACAGAGTGGCAATTTTATCCAATAAATAAAAAAAGCTATGAGAATGGGGTAACTGCTACGCTGAAGCCTAGTGTAGAGTTACCAGCTCATTTCTC
Unaligned ( gi|32 ): CACAGGAGTCGGCAGTTTTCTCTGTCAAGGTCTACAATTATGAATATAAACAACTACTAAACTTCGCGAACG
Unaligned ( gi|34 ): AATCACAAGAGTCGGCAATTTATCAATAAACTTAAAGTAGAAAAATCTGTGAGAAATGGGGGGGGGGGG
Unaligned ( gi|35 ): AGAATCCGCATCCATTTCCCGTTTTACCAGCAAATGTCGTTTCTGCTTCACAAGAGTTAGATAACTC
Unaligned ( gi|36 ): ATATCATTTCACATCGGAAATGTTTCTTTTTTCAAGGCGTTTTCCTTTCCTCTAATCG
Unaligned ( gi|37 ): GGATATCTTCACATCGAATGTTTCTTTTTTCAAAAGGCGTTTTCCTTTCCTTTATCA
Unaligned ( gi|38 ): GGAGTCGGCAATTTATCAATAAAGTAGATATATGCGAGAAAGAGTTGCTAAATTTTA
Unaligned ( gi|39 ): CTACCACAGGGGTCGGCAATTTCTCAATAAACATTTTAGAGTAGAGAA
Unaligned ( gi|41 ): NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
Unaligned ( gi|42 ): CAGCTCTCCGCGCAAATTTATTGCGCTTACAC
Alignments
lowQualScore : 11111111111 111111111 111 222 11 444444444444444 666666666666666666666666666
lowQualScore : 3 3 44 44 7777 3 3 44 999999 3 55555555555 444444444 3 3 3 3 4 4 99 0 777 222 777 4 1 55 4 8888 4 4 4 55 55 000 4 55 0 66 777 55 4 999999999999999 6 444444444444444444444444444 4 3 5 2 88888 33 2 99999999 444 5555 2 2 33 2 2 33 33 33
lowQualScore : . . .. .. .... . . .. ...... . ........... ......... . . . . . . .. . ... ... ... . . .. . .... . . . .. .. ... . .. . .. ... .. . ............... . ........................... . . . . ..... .. . ........ ... .... . . .. . . .. .. ..
lowQualScore : 6 3 66 66 1111 3 3 66 666666 3 88888888888 555555555 6 6 6 6 0 0 55 8 000 555 000 0 0 55 0 5555 0 0 0 55 55 555 0 55 5 99 111 55 0 222222222222222 7 333333333333333333333333333 4 1 0 5 11111 44 5 11111111 444 3333 5 5 44 5 5 44 44 44
consensus : GTTTGA-AACTCGCTG-TAAAA--TT--A----GCTGGACATGCAGGGC-T-AA--C------TAC-TTGT-----------AAAATTT---------GTTA-GCCC-T-G-CCAGAGA-GCCA-CT--AGCCCTG---C---AA---TATAT-TTTNTT--GGTATAC-TAA----T-TA-TC-TT--A--TCTTATTCAAGCGATAATATG-AT--TAAAACTTATATTCACATCTT--CGAT--CCCAA-TCATAAAAATGTCGATG---TTA---CAACTTCA-TTACCGATT-------------T-------------TTCTCTCAGCGGAAA-TTTTAACCCGTCCGGTCGGGCGTCTTTGC-A-AAG-AAATGTGTTCGCCCGCGGCAGAA-TT--T-ATGCGTC--------TCGG---GC----GGTC-GGG-C--G-TACGGTT-ATT--T--C--AAACACTG
Reference ( family-7250 ) : GTTTGA-AACTCGCTG-TAAAA--TT--A----GCTGGACATGCAGGGC-T-AA--C------TAC-TTGT-----------AAAATTT---------GTTA-GCCC-T-G-CCAGAGA-GCCA-CT--AGCCCTG---C---AA---TATAT-TTTNTT--GGTATAC-TAA----T-TA-TC-TT--A--TCTTATTCAAGCGATAATATG-AT--TAAAACTTA-ATTCACATCTT--CGAT--CCCAA-TCATAAAAATGTCGATG---TTA---CAACTTCA-TTACCGATT-------------T-------------TTCTCTCAGCGGAAA-TTTTAACCCGTCCGGTCGGGCGTCTTTGC-A-AAG-AAATGTGTTCGCCCGCGGCAGAA-TT--T-ATGCGTC--------TCGG---GC----GGTC-GGG-C--G-TACGGTT-ATT--T--C--AAACACTG
gi|1 : GTTTGACAACTCGCTGCTAAAAGTTT--ATAAGACTGGACATGCATGGCGT-AATAC------TCC-TTGTTATTTTTTCTAAAAATTTTATTTCAGTGTGATGCCCATAG-CCAGAGAAGCCA-CTTAAGCCCAGAGCC---AAAATTGTAT-TTTCTTTCGGTATAC-TAA----T-TA-TCGTT--A--TCTTATTCAAGCG---ATATG-AT--AAAAATTTATATTCATATCTTTCCGATTACCCAATTCATAAAAATGT-AACC---TT--------CTCA-TTACCGATT-------------T-------------T
gi|1 : caacctttctacgtaaatgagtacacaccactccattgggaaaaaatctttatcatttaatagtgtttgtaaaatgagcgatccaaacatactattcaaaaagtatatgacctctcttatttgtacacatcgtattttctcttcactttttctaaccattttctctgattagaatacctatcaatacactctcccacaaactctttgtcagagtcattagcgtatttagatctccacacaggagtctaggcaagcattatatcaataaagtagaagcctaggcttattgtgggatatatatcgcggtaacaactccctagcactggaggtcttcgccgcgagacgtcacagccgagcggaaactcctagcactgaggcttcgcgaagcggagagcgctcgctaccgctcgcgaagctcacatagtgcctaggattttttaccttcgatattttcactatactatcttacttttacttagaattaaggccggagctccgtggttgaatatcattcacatcagaatgtttcctttttgtcacaaggcagttttcctttctttatcagtTCTTTGCCATAAT-GAATGT-TTCGGCCGCGAC-------------GCGTC--------TCGACACGCACAGGGTC-GGGACAGG-TACGGTT-ATTTGT--C--AAACACTattacatataaagagattctttgccataatgaatgtttcggccgcgacgcgtctcgacacgcacagggtcgggacaggtacggttatttgtcaaacactcgccttgacaaaaattgcaagcttaaatggcaggaaagaaaatacttgcgtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntacgaaaacttctgtaaatgctttgttagtttcaacaaacaggtgctacataattactctataaattaaatcacatgaaataaa
gi|10 : caacctttctacgtaaatgagtacacaccactccattgggaaaaaatctttatcatttaatagtgtttgtaaaatgagcgatccaaacatactattcaaaaagtatatgacctctcttatttgtacacatcgtattttctcttcactttttctaaccattttctctgattagaatacctatcaatacactctcccacaaactctttgtcagagtcattagcgtatttagatctccacacaggagtctaggcaagcattatatcaataaagtagaagcctaggcttattgtgggatatatatcgcggtaacaactccctagcactggaggtcttcgccgcgagacgtcacagccgagcggaaactcctagcactgaggcttcgcgaagcggagagcgctcgctaccgctcgcgaagctcacatagtgcctaggattttttaccttcgatattttcactatactatcttacttttacttagaattaaggccggagctccgtggttgaatatcattcacatcagaatgtttcctttttgtcacaaggcagttttcctttctttatcagtgtttgacaactcgctgctaaaagtttataagactggacatgcatggcgtaatactccttgttattttttctaaaaattttatttcagtgtgatgcccatagccagagaagccacttaagcccagagccaaaattgtattttctttcggtatactaattatcgttatcttattcaagcgatatgataaaaatttatattcatatctttccgattacccaattcataaaaatgtaaccttctcattaccgattttattacatataaagagatGTTTGA-AACTCGCTG-TAAAA--TTTAA----GCTGGACATGCAGGGC-TTAA--C------TACCTTGT-----------AAAATTT---------GTTA-GCCC-T-G-CCAGAGA-GCCA-CTA-AGCCCGG---CGAAAA---TTTAT-TTTCTT--CGTATACTTAA----T-TA-TC-TT--A--TCTTATTCAAGCG---ATATG-AT--TAAAATTTATATTCATATCTT---GAT--CCCAA-TCATAAAAATGT---------------AAACTCATTTACCGATT-------------T-------------cgccttgacaaaaattgcaagcttaaatggcaggaaagaaaatacttgcgtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntacgaaaacttctgtaaatgctttgttagtttcaacaaacaggtgctacataattactctataaattaaatcacatgaaataaa
gi|10 : TCTTTGC-A-AAG-AAATGTGTTCGGCCGCGAC-------------GCGTC--------TCGG---GC----GGTC--GG-C--G-TACGGTT-ATT--T--C--AAACACTGaatacatataaatttctttgcaaagaaatgtgttcggccgcgacgcgtctcgggcggtcggcgtacggttatttcaaacactg
gi|11 : gtttgaaactcgctgtaaaatttaagctggacatgcagggcttaactaccttgtaaaatttgttagccctgccagagagccactaagcccggcgaaaatttattttcttcgtatacttaattatcttatcttattcaagcgatatgattaaaatttatattcatatcttgatcccaatcataaaaatgtaaactcatttaccgatttaatacatataaattTTGA-AACTCGCTG-TAAAA--TT--A----GCTGGACATGCAGGGC-T-AA--C------TAC-TTGT-----------AAAATTT---------GTTA-GCCC-T-G-CCAGAGA-GCCA-CT--AGCCCGG---CAA-AA---TTTAT-TTTCTT--CGTATAC-TAA----T-TA-TC-TT--A--TCTTATTCAAGCG---ATATG-AT--TAAAATTTATATTCATATCTT--CGAT--CCCAA-TCATAAAAATGT---------------AACTTCA-TTACCGATT-------------T-------------
gi|11 : TCTTTGC-A-AAG-AAATGTGTTCGGCCGCGAC-------------GCGTC--------TCGG---GC----GGTC-GGG-C--G-TACGGTT-ATT--T--C--AAACACaatacatataaatttctttgcaaagaaatgtgttcggccgcgacgcgtctcgggcggtcgggcgtacggttatttcaaacac
gi|12 : ttgaaactcgctgtaaaattagctggacatgcagggctaactacttgtaaaatttgttagccctgccagagagccactagcccggcaaaatttattttcttcgtatactaattatcttatcttattcaagcgatatgattaaaatttatattcatatcttcgatcccaatcataaaaatgtaacttcattaccgatttaatacatataaattTATAC-CAA----T-TA-TC-TT--AGATCTTATTCAAGCGATAATATG-AT--TAAAACTTA-ATTCACATCTT--CGAT--CCCAA-TCATAAAAATGTCGATG---TTATTGCAACTTCA-TTATCGATTTTATACATCTAAAT-------------TTCTCTCAGCGAAAA-ATTTAACCCGTCCGGTTGGGCGTCTTTGC-G-AAG-AAATGTGTTCGCCCGCGGCAGAA-TT--T-ATGCGTC-----------------------TC-GGG-C--G-TACGGCT-ATT--T--C--AAACACT
gi|21 : TA---TTG---CAACTTCA-TTACCGATT-------------TAATACATCTAAATTTCTCTCAGCAGAAA-TTTTAACCCATCCGGTCAGGCCTCTTTAC-A-AAG-AAATGTG--CACCTGCGGCAGAA-TT--T-ATGTGTC--------TTGG---GC----GGTC-AGG-C--A-TACGGTT-ATT--T--C--AAACAC
gi|23 : gatctTA---CAACTTCA-TTACCGGTA-------------T-------------T-----CAGCGGAAAAGTCTAACACGTCCGGTCGGGCGTCT
gi|24 : acGTTTGA-AACTCGCTG-TAAAA--GG--A----GCTGGACATCCAGGGC-T-AG--C------TAC-TTGT-----------AAAATTT---------GTTA-GCCC-T-G-CCAGGGA-TCCA-CT--AGCCCTA---C---AA---TATAT-TTTGTT--Ggtcttcacatgcaatatgtatagcaataaatgtatcctactctggc
gi|27 : gtGCGTCTTTGC-A-AAG-AAATGTGTTCGCCCGCAGCAGAAATT--T-ATGCGTC--------TCGG---GC----GGTC-GGG-C--G-TACGGTT-ATT--T--CATAAACACTG
gi|28 : t-AAG-AAATGTGTTCGCTCATGGCAGAA-TT--T-ATGCGTC--------TTGG---GC----GGTC-GGG-C--C-TACGGTT-ATT--T--C--AAACAC
gi|29 : cgattcctaccGTTTGA-AACTTGCTT-TAAAA--TT--A----GCTGGACATGCAGTGC-T-AA--CTACATGTAC-TTGT-----------AAAAATT---------GTTA-GCCC-T-G-CC
gi|3 : GTTTGA-AACTCGCTG-TAAAA--TT--A----GCTGGACATGCAGG-C-T-AA--C------TAC-TTGT-----------AATGTTT---------GT---GCCC-T-G-CCAGAGA-GCC---T--AGCCCTG---C---AA---TATAT-TTTGTT--GG-ATAC-TAAGTACTGTA-TC-TT--G--TCTTATTCAAGAGATAATATG-AT--TAAAACTTA-ATTCACATCTT--CGAT--CCCAA-TCATAAAAATGTCGATA---TTATTGCGACTGCA-TTACCAATTTAATACATCTAAAT-------------TTCTCTCAGCGAAAA-TTTTAACCCGTCCGGTCGGGCGTCATTGC-A-ACG-AAATGTGTACGCCCGCAACAG-A-TG--T-ATGCGTC--------TCGG---GC----GGTC--GG-C--G-TACGGTT-ATT--T--C--AAACACTcg
gi|30 : gt-AAGTAGATATATCCCCCCGCCCCCGAAATT--T-ATGCGTC--------TCCG---GC-----TTCGGGG-C--G-TACAGTT-ATT--TTAT--AAACACT
gi|31 : -A-AAG-AAATTTATTTTCCTGCAGCAAAG-TT--TTATGCCTC--------TTGT---GC----GGTT-AGG-C--A-CATGTTT-ATC--T--T--AAACACT
gi|33 : -AAG-AAACGTGTT-GCCCGCGGCAGA--TT--T-ATGCGTC--------TCGG---AC----GGTC-GGG-C--GTTACGGTT-ATT--T--C--AAAAACT
gi|4 : GTTTGA-AACTCGCTC-TAAAT--TT--A----GCTGGACATGCAGAGT-T-AA--C------TAC-TTGT-----------AACATTC---------TTTA-GCCC-T-G-CCAGAGA-GCAA-CT--AGCCCTG---C---AA---TATAT-TTTCTT--GGTATAC-TAA----T-CA-TC-TT--A--TCT--------------TATG-AT--TAAAACTTC-ATTCACATCTT--CGAT--CCCAA-TCATAAAAATGTCGATG---CTAAATCAACTTCA-TTACCGATTTAATACATCTAAAT-------------TTCTTTCAGCGGAAA-TTTTAA-ACGTCCGGTCTGGCGTCTTTGC-A-AAG-AAATGTGTTCGCCCGCAGCAGAA-TTTAT-ATGCGTCTCGGGCGGTCGG---GC----GGTC-GGG-C--G-TACGGTT-ATT--T--C--AAACA
gi|40 : tTCACTG-TAAAA--TT--A----TCTAGACATGCAAGGT-T-GA--T------TGT-TTAT-----------AAAA
gi|5 : tGTTTAA-AACTCACTG-TAAAA--TT--A----GCTGGACATGCAGGGC-T-AA--C------TAC-TTGT-----------AAAATTT---------GTTA-GCCC-T-G-CCAGAGA-GCCA-CT--AGCACTG---C---AA---TATAT-TTTGTT--GGTATAC-TAA----T-TA-TC-TT--A--TCTTATTCAAGCGATACTATG-AT--TAAAATTTT-ATTCACATCTT--TGAT--CCCAA-TCATAGAAATGTCGATGTCATTG---CAATTTCA-TTACCGATT-------------T-------------TTCTCTCAGCGGAAG-TTTTAACCCGTCCGGTTGGGCGTCATTGC-ATAAG-AAATGTGTTCCTCCGCAATAGAA-TT--T-ATGCGTC--------TCGG---GC----GGTC-GGG-C--G-TACGGTT-ATT--T--C--AAACACTG
gi|7 : TTTGA-AACTCGCTG-TAAAA--TT--A----GCTGGACATGCAGGGC-C-AA--C------TAC-TTGT-----------AAAATTT---------GTTA-GCCC-T-G-CCAGAGA-GCCA-CT--AGCCCTG---C---AA---TATAT-TTTGTT--GGTATAC-TAA----T-TA-TC-TT--A--TCTTATTCAAGTGATAATATG-AT--TAAAACTTA-ATTCACATCTT--CGAT--CCCAA-TCATAAAAATGTCGATG---TT-------------------ATT-------------T-------------TTCTCTCAGCGGAAA-TTTTAACCCGTCCAGTCGGGCGTCTTTGC-A-AAG-AAATGTGTTCGCCCACAGCAGAA-TT--T-GTGCATC--------TCGG---GC----GCTC-GGG-T--G-TACAGTT-ATT--T--C--AAACACT
gi|8 : TTTGA-AACTCGCTG-TAAAA--TT--A----GCTGGACATGCCGGGC-T-AA--C------TAC-TTGT-----------AAAATTT---------GTTA-GCCC-T-GCCCAGAGA-GCCACCT--AGCCCGG---C---AA---AATTTATTTCTT--CGTATAC-TAA----T-TATTC-TTTAA--TCTTATTCAAGCG---ATATGAATTATAAAATTTATATTCATATCTT--CGAT--CCCAA-TCATAAAAATGT---------------AACTTCATTTACCGAGA-------------T-------------TTAATACATTATAAA-TTT--------------------CTTTGC-A-AAG-AAATGTGTTCG-CCGCGAC-------------GCGTC--------TCGG---GC----GGTC-GGG-C--G-TACGTTTCATT--T--C--AAACACTG
gi|9 : gtGTTTGA-AACTCGCTG-TAAAA--TT--A----GCTGGACATGCAGGGC-T-AA--C------TAC-TTGT-----------AAAAACT---------GTTA-GCCC-T-G-CCCGAAA-GCCA-CT--AGCCCTG---C---AA---TATAT-TTTGTT--GGTATAC-TAA----T-TA-TC-TT--A--TCTTATTCAAACGACAATAGG-AT--TAAG--TT---TTTAAAACTT---------------------AAT----------TCA---CATCTTCG-TTA---AAA-------------T-------------TTCTCTCAGCGGGAA-TTTTAACCCGTTCGGTCAAGCGTCTTTGC-A-AAG-AAATGTGTTCACCCGCGGCAGAA-TT--T-ATGTGTC--------TCGG---AC----GGTC-GGG-C--G-TACGGTT-ATT--T--C--AAACACT
22 sequences could not be aligned to this reference sequence:
Unaligned ( gi|2 ): CCACCCCACCAGATTAGAATTTTTTATCGATTTTTAAGCATTTTTGGCTTTCTTAATCAATTTATTATGCTTTCAAGAAATTTCGAGGGAAACCAACATTTCTACGTAAAATTGGATGTAAACCCCTCCATTGGGAAAAATCTATTTTATATGTTTTTAAAATGACATCAAACATAATATTCAAAAATATTGCCTTTATTTTACACATCTATTTCTTTCACTTTTCTAAAATTTCTATTAAATCTATAATTAATTTTCCCACAACTCTTTGTTCACAGTTCTTACTATATCATCACAGGAGTCGGCAATTTATCAAAATTAAAGTTAGATAGTTAGAGTTAGGCTATATGTGAATAATATCGGTAAAAATTCCTAGCACTGAGCTTCGCGGCCCCCACCGTAGCGACGCGAAAAATCCTAGCACTGAGCTTTCGCGAGCGAAGCCGTCGTACGCTCGCACGAAGCTTCAGTGCTTTAGGATTTTTTTACCGAATATTTTCCACATACTTCTACTTTATGTAAAATTGCCGACTCC
Unaligned ( gi|6 ): TTTTTTTTATTTTTAAGCATTTTTTGGGGCTTTTATTAATTAATCAATTTGAATTATGTCTTGTCAAGAAATTTCGAGAAAAACCAAACATTTCTACGGTAAATGAGGTACCCTCCATGTGGGGAAAAATCTAATTTTATCTGTTTTAAAAAAAAAAATGACATCAACCATTATAAAATTCAAATATAAGTTTGGCCTTTAATTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGAGTCGGGGG
Unaligned ( gi|13 ): GGGGCGGCAATTTTATCAATTAAGTAGAAGTAAGGCTATATGTGAAATATCGGTAAATCCTAAGCACTGAAGCTTCGCGAGCGTAGCGAGCGAAAAAATCCTAGCACTGAGCTTTCGCAGCGAAGCGCTCGCTACGCTCGCGAAAGCTCAGTGCTAGGATTTTTTACCGTATTTCACATACTTCTACCTTTATTGATAAAATTGCGACTCCCTGT
Unaligned ( gi|14 ): TGGCAAAATCAAGCCTAAATTTGGGAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAAAATATCGAAAACTTGTACGAATGCCTGTTTTCAACAAATAGTTACAAATTACTTTAAAAATTCACTGAAAAAATTGGTATAATTATAATAG
Unaligned ( gi|15 ): ACAGGAGTCGGCAATTTTATCAATAAAGTAGAAATATTTGAGAAATGGGCGGAAATTCTACCACTGAGCTTTGCGAGCGTGAAGCTCACTTATATGTTTGCGAATTAAGCTCACTGCTCGCAAAGCTCACTGTGCCAGTTAGAGTTTTCGCTTATTTCTCATATTTTATAATTGCCGACTCCTGTG
Unaligned ( gi|16 ): CATTGCAAAAAATGCAAGCTTAAATTGGGAGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGAAAACTTGTACAATGCGGTTTCAACCAACATGTACAAATTACTTTTAAAAAAATCACTGAAAAATGTATAATTAATAAAA
Unaligned ( gi|17 ): CACCCACCCAGAATTAGAATTTTTATCGATTTTTAAGCATTTTGGCTTTTATTAATCAATTTGAATTATGCTTGTCAAGAAATTTCGAGAAACCAACATTTCTACGTAAATGAGTACCCCTCCATTGGGAAAAATCTATTTTATCATGTTTTAAAATGACATCAAACATAATATTCAAA
Unaligned ( gi|18 ): ACAGGAGTCGGCAATTTTATCATAAAGTAGAAGTATGTGAAATATCGGTAAAAATCCTAGCACTGAGCTTCGCGAGCGTAGCGAGCGAACGCTCGCCGAAGCTCAGTGCTAGGATTTTTACCGATATTTCACATACTTCTACTTTATTTGATAAAATTGCCGACTCCT
Unaligned ( gi|19 ): CAGGAGTCGGCAATTTTATCAATAAAGTAGAAGTATGGTGAAATATCGGTAAAAATCCTAGCACTGAGCTTCGCGAGCGTAGCGAGCGAACGCTCGCGAAGCTCAGTGCTAGGATTTTTACCGATATTTCACATACTTCTACTTTATTGATAAAATTGCCGACTCCTG
Unaligned ( gi|20 ): GCAAGCTAAATTGGGAGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCGAAAACTTGTACAATGCTGTTTTCAACAACATGTACAAATTACTTAAAAAATCACTGAAAAATTGTATAATTAATAATAG
Unaligned ( gi|22 ): ACAGGAGTCGGCAATTTTATCAATAAAATAAAAATGTATGAGAAATGGGGGTGACTACCACTGAGCTTCACGAGCGTGAAGCTCAGTGTAGAGTCACCCTCATTTCTCATACATTTTAATTTATTGATAAAATTGCCGACTCCTGT
Unaligned ( gi|25 ): CACAGGAGTCGGCAATTTTATCAATAAAGACTTAAGTAGAAGTATGTGAGATATCGGTAAAAATCCTATCACTGAGCTTCGCGAGCTTAGCGGAACTAACTCTA
Unaligned ( gi|26 ): AAGCACAGAGTGGCAATTTTATCCAATAAATAAAAAAAGCTATGAGAATGGGGTAACTGCTACGCTGAAGCCTAGTGTAGAGTTACCAGCTCATTTCTC
Unaligned ( gi|32 ): CACAGGAGTCGGCAGTTTTCTCTGTCAAGGTCTACAATTATGAATATAAACAACTACTAAACTTCGCGAACG
Unaligned ( gi|34 ): AATCACAAGAGTCGGCAATTTATCAATAAACTTAAAGTAGAAAAATCTGTGAGAAATGGGGGGGGGGGG
Unaligned ( gi|35 ): AGAATCCGCATCCATTTCCCGTTTTACCAGCAAATGTCGTTTCTGCTTCACAAGAGTTAGATAACTC
Unaligned ( gi|36 ): ATATCATTTCACATCGGAAATGTTTCTTTTTTCAAGGCGTTTTCCTTTCCTCTAATCG
Unaligned ( gi|37 ): GGATATCTTCACATCGAATGTTTCTTTTTTCAAAAGGCGTTTTCCTTTCCTTTATCA
Unaligned ( gi|38 ): GGAGTCGGCAATTTATCAATAAAGTAGATATATGCGAGAAAGAGTTGCTAAATTTTA
Unaligned ( gi|39 ): CTACCACAGGGGTCGGCAATTTCTCAATAAACATTTTAGAGTAGAGAA
Unaligned ( gi|41 ): NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
Unaligned ( gi|42 ): CAGCTCTCCGCGCAAATTTATTGCGCTTACAC