lowQualScore : 1111
lowQualScore : 2 999999 2 2 2 3333 33 0 7 2 2 2
lowQualScore : . ...... . . . .... .. . . . . .
lowQualScore : 4 111111 4 4 4 8888 11 1 2 5 7 9
consensus : CTAATACTACT-AC------TTG-T-G-TGGAT---TTTT-CAATACCTATT-T-GTG-GAATA
Reference ( gi|10 ) : CTAATACTACT-AC------TTG-T-G-TGGAT---TTTT-TAATACCTACT-T-GTG-GAATA
gi|1 : CTAGTACTACT-ACATGTACTTG-T-G-TGGA----TTTT-CAATACTTATTAT-ATG-
gi|13 : attataTAATACTACT-ACC-----TTG-T-G-TGGAT---TTTT-TAATACCTACT-T-GTG-
gi|7 : TAATACTACT-AC------TTG-T-GGTGGAT---TTTT-TAATACCTATT-TGGTG-GAATA
gi|6 : TATTACTACT-AC------TTG-TTG-TGGAT---TTTT-TAATACCTATT-T-GTG-GAATA
gi|15 : tATACTACT-AC------TTG-T-G-TGGAT---TTTT-TAATACCTATT-T-GTG-GAt
gi|14 : ttATACTACT-AC------TTG-T-G-TGGAT---TTTT-TAATACCTATT-T-GTG-GA
gi|8 : ttATACTACT-AT------TTG-T-G-TGGA----TTTT-CAATACCTATT-T-GTG-GAATA
gi|4 : attACACTACT-AC------TTG-T-G-TG-ATAAATTTT-CAATACTTATT-T-GTG-GAATAta
gi|9 : attATACTAC--AC------C-G-T-G-TGGAT---TTTTATAACACTTATT-T-GTG-GAAt
gi|18 : ATACAACT-AC------TTG-T-G-TGGA----TTTT-TAA----TACT-T-TTG-GAATAatataca
gi|11 : tATACTACT-AC------TTG-T-G-TAGA----ATTT-CGATACTTAGT-T-GTG-GTATA
gi|2 : ttATACTACT-AC------TTG-T-G-TGGA-----TTT-CAATACACAA--T-GTGTGAATAta
gi|3 : ttATACTACT-AC------TTG-T-G-TGGAT---TTTT-C-ATATTTATA-T-GTtataatcatgt
gi|16 : tctgatatttttatcATACTCCT-AC------TTG-T-G-TGGA----TTTT-CAATACTTATT-
gi|17 : tttttatcATACTACT-AC------TTG-T-G-TGGA
gi|12 : ataggccttctgatattcttattATGCTACT-AT------CTACT-G-TAGAT---TTTC--GATACTTGTT-T-GTG-GAATA
gi|5 : ttTACTCAC------TTG-T-G-TGGAT---TTTT-TAATACCTA---T-GTT-GGATt
Alignments
lowQualScore : 2 888888 2 2 2 6666 22 2 2 2
lowQualScore : . ...... . . . .... .. . . .
lowQualScore : 2 666666 2 2 2 6666 88 4 4 5
consensus : CTAATACTACT-AC------TTG-T-G-TGGAT---TTTT-CAATAC-CTATT-T-GTGGAATA
Reference ( family-7043 ) : CTAATACTACT-AC------TTG-T-G-TGGAT---TTTT-CAATAC-CTATT-T-GTGGAATA
gi|1 : CTAGTACTACT-ACATGTACTTG-T-G-TGGA----TTTT-CAATAC-TTATTAT-ATGG
gi|10 : attataCTAATACTACT-AC------TTG-T-G-TGGAT---TTTT-TAATAC-CTACT-T-GTGGAATA
gi|11 : ATACTACT-AC------TTG-T-G-TAGA----ATTT-CGATAC-TTAGT-T-GTGGTATA
gi|12 : ttATGCTACT-AT------CTACT-G-TAGAT---TTT--CGATAC-TTGTT-T-GTGGAATAta
gi|13 : ttTAATACTACT-ACC-----TTG-T-G-TGGAT---TTTT-TAATAC-CTACT-T-GTGGt
gi|14 : ATACTACT-AC------TTG-T-G-TGGAT---TTTT-TAATAC-CTATT-T-GTGGA
gi|15 : ttATACTACT-AC------TTG-T-G-TGGAT---TTTT-TAATAC-CTATT-T-GTGGA
gi|16 : ttATACTCCT-AC------TTG-T-G-TGGA----TTTT-CAATAC-TTATT-
gi|17 : tttttatcATACTACT-AC------TTG-T-G-TGGA
gi|18 : ataggccttctgatattcttattATACAACT-AC------TTG-T-G-TGGAT---TTTT--AATAC----TT-T--TGGAATA
gi|2 : tATACTACT-AC------TTG-T-G-TGGA-----TTT-CAATACACAATG-T-GT-GAATA
gi|3 : ttATACTACT-AC------TTG-T-G-TGGAT---TTTT-C-ATAT-TTATA-T-GTtataatcatgt
gi|4 : tctgatatttttatcACACTACT-AC------TTG-T-G-TG-ATAAATTTT-CAATAC-TTATT-T-GTGGAATA
gi|5 : attTACTCAC------TTG-T-G-TGGAT---TTTT-TAATAC-CTATG-T--TGGATTAt
gi|6 : taTATTACTACT-AC------TTG-TTG-TGGAT---TTTT-TAATAC-CTATT-T-GTGGAATAtatatata
gi|7 : tTAATACTACT-AC------TTG-T-GGTGGAT---TTTT-TAATAC-CTATT-TGGTGGAATAt
gi|8 : ATACTACT-AT------TTG-T-G-TGGAT---TTT--CAATAC-CTATT-T-GTGGAATA
gi|9 : attATACTAC--AC------C-G-T-G-TGGAT---TTTTATAACAC-TTATT-T-GTGGAAta
Alignments
lowQualScore : 2 888888 2 2 2 6666 22 2 2 2
lowQualScore : . ...... . . . .... .. . . .
lowQualScore : 2 666666 2 2 2 6666 88 4 4 5
consensus : CTAATACTACT-AC------TTG-T-G-TGGAT---TTTT-CAATAC-CTATT-T-GTGGAATA
Reference ( family-7043 ) : CTAATACTACT-AC------TTG-T-G-TGGAT---TTTT-CAATAC-CTATT-T-GTGGAATA
gi|1 : CTAGTACTACT-ACATGTACTTG-T-G-TGGA----TTTT-CAATAC-TTATTAT-ATGG
gi|10 : attataCTAATACTACT-AC------TTG-T-G-TGGAT---TTTT-TAATAC-CTACT-T-GTGGAATA
gi|11 : ATACTACT-AC------TTG-T-G-TAGA----ATTT-CGATAC-TTAGT-T-GTGGTATA
gi|12 : ttATGCTACT-AT------CTACT-G-TAGAT---TTT--CGATAC-TTGTT-T-GTGGAATAta
gi|13 : ttTAATACTACT-ACC-----TTG-T-G-TGGAT---TTTT-TAATAC-CTACT-T-GTGGt
gi|14 : ATACTACT-AC------TTG-T-G-TGGAT---TTTT-TAATAC-CTATT-T-GTGGA
gi|15 : ttATACTACT-AC------TTG-T-G-TGGAT---TTTT-TAATAC-CTATT-T-GTGGA
gi|16 : ttATACTCCT-AC------TTG-T-G-TGGA----TTTT-CAATAC-TTATT-
gi|17 : tttttatcATACTACT-AC------TTG-T-G-TGGA
gi|18 : ataggccttctgatattcttattATACAACT-AC------TTG-T-G-TGGAT---TTTT--AATAC----TT-T--TGGAATA
gi|2 : tATACTACT-AC------TTG-T-G-TGGA-----TTT-CAATACACAATG-T-GT-GAATA
gi|3 : ttATACTACT-AC------TTG-T-G-TGGAT---TTTT-C-ATAT-TTATA-T-GTtataatcatgt
gi|4 : tctgatatttttatcACACTACT-AC------TTG-T-G-TG-ATAAATTTT-CAATAC-TTATT-T-GTGGAATA
gi|5 : attTACTCAC------TTG-T-G-TGGAT---TTTT-TAATAC-CTATG-T--TGGATTAt
gi|6 : taTATTACTACT-AC------TTG-TTG-TGGAT---TTTT-TAATAC-CTATT-T-GTGGAATAtatatata
gi|7 : tTAATACTACT-AC------TTG-T-GGTGGAT---TTTT-TAATAC-CTATT-TGGTGGAATAt
gi|8 : ATACTACT-AT------TTG-T-G-TGGAT---TTT--CAATAC-CTATT-T-GTGGAATA
gi|9 : attATACTAC--AC------C-G-T-G-TGGAT---TTTTATAACAC-TTATT-T-GTGGAAta
blockSeqs : C C C T G TAAA AT A . G
blockSeqs : . . . . . T T . . .
blockSeqs : . . . . . T C . . .
blockSeqs : . . . . . T C . . .
blockSeqs : . . . . . T T . . .
blockSeqs : . . . . . T T . . .
blockSeqs : . . . . . T T . . .
blockSeqs : . . . . . T C . . .
blockSeqs : . . . . . T C . . .
blockSeqs : . . . . . T C . . .
blockSeqs : . . . . . T C . . .
blockSeqs : . . . . . T T . . .
blockSeqs : . . . . . T T . . .
blockSeqs : . . . . . . T . . .
blockSeqs : . . . . . . C . . .
blockSeqs : . . . . . . . . .
blockSeqs : . . . . .
blockSeqCons : ****** T***
originalCons : CTAATACTACT-AC------TTG-T-G-TGGAT---TTTT-CAATAC-CTATT-T-GTGGAATA
finalCons : CTAATACTACT-AC------TTG-T-G-TGGAT---TTTT-CAATAC-CTATT-T-GTGGAATA
Alignments
lowQualScore : 2 888888 2 2 2 6666 22 2 2 2
lowQualScore : . ...... . . . .... .. . . .
lowQualScore : 2 666666 2 2 2 6666 88 4 4 5
consensus : CTAATACTACT-AC------TTG-T-G-TGGAT---TTTT-CAATAC-CTATT-T-GTGGAATA
Reference ( family-7043 ) : CTAATACTACT-AC------TTG-T-G-TGGAT---TTTT-CAATAC-CTATT-T-GTGGAATA
gi|1 : CTAGTACTACT-ACATGTACTTG-T-G-TGGA----TTTT-CAATAC-TTATTAT-ATGG
gi|10 : attataCTAATACTACT-AC------TTG-T-G-TGGAT---TTTT-TAATAC-CTACT-T-GTGGAATA
gi|11 : ATACTACT-AC------TTG-T-G-TAGA----ATTT-CGATAC-TTAGT-T-GTGGTATA
gi|12 : ttATGCTACT-AT------CTACT-G-TAGAT---TTT--CGATAC-TTGTT-T-GTGGAATAta
gi|13 : ttTAATACTACT-ACC-----TTG-T-G-TGGAT---TTTT-TAATAC-CTACT-T-GTGGt
gi|14 : ATACTACT-AC------TTG-T-G-TGGAT---TTTT-TAATAC-CTATT-T-GTGGA
gi|15 : ttATACTACT-AC------TTG-T-G-TGGAT---TTTT-TAATAC-CTATT-T-GTGGA
gi|16 : ttATACTCCT-AC------TTG-T-G-TGGA----TTTT-CAATAC-TTATT-
gi|17 : tttttatcATACTACT-AC------TTG-T-G-TGGA
gi|18 : ataggccttctgatattcttattATACAACT-AC------TTG-T-G-TGGAT---TTTT--AATAC----TT-T--TGGAATA
gi|2 : tATACTACT-AC------TTG-T-G-TGGA-----TTT-CAATACACAATG-T-GT-GAATA
gi|3 : ttATACTACT-AC------TTG-T-G-TGGAT---TTTT-C-ATAT-TTATA-T-GTtataatcatgt
gi|4 : tctgatatttttatcACACTACT-AC------TTG-T-G-TG-ATAAATTTT-CAATAC-TTATT-T-GTGGAATA
gi|5 : attTACTCAC------TTG-T-G-TGGAT---TTTT-TAATAC-CTATG-T--TGGATTAt
gi|6 : taTATTACTACT-AC------TTG-TTG-TGGAT---TTTT-TAATAC-CTATT-T-GTGGAATAtatatata
gi|7 : tTAATACTACT-AC------TTG-T-GGTGGAT---TTTT-TAATAC-CTATT-TGGTGGAATAt
gi|8 : ATACTACT-AT------TTG-T-G-TGGAT---TTT--CAATAC-CTATT-T-GTGGAATA
gi|9 : attATACTAC--AC------C-G-T-G-TGGAT---TTTTATAACAC-TTATT-T-GTGGAAta