lowQualScore : 4 1 77777777 11 1 111 111111111111 11 22222 22222222 1111 22222222222222 111 66666666666666666 2 1
lowQualScore : 0 5 6 7 11111111 2 11 77 3 000 2 555555555555 5 1 5555 2 3 7777 3 22 2 7 0 3 11111 4 66666666 0000 5 88888888888888 000 11111111111111111 0 2 0 5 4 6
lowQualScore : . . . . ........ . .. .. . ... . ............ . . .... . . .... . .. . . . . ..... . ........ .... . .............. ... ................. . . . . . .
lowQualScore : 0 0 0 0 77777777 5 22 99 5 000 9 888888888888 3 6 7777 7 1 1111 3 33 8 3 6 6 11111 0 44444444 5555 0 77777777777777 000 33333333333333333 7 5 0 0 0 0
consensus : NAGGATTTTTTAATT-GGGTTCTGTTATTTCAGTTCGGGTCATAAAACATTATCTGTATTTTGTTACAATATATA-GCA----ACAGTGTTNTT-GAAATTTACCAGTCCGAAGGA---TT-TG---A-TNGG---TTAAAATTTC-CTCGGACCG----GT-AAAGTTCAC-AGTAC----ATTT-CATTATTCGGACTG-ATAAAAAT-C----NTG-AAATGTC----C--GGTAC-TTCA-GAA--A--G--A-T---TTTC---AACATT----------GAAGAACTCTATATCAANTACGCAGATGCNCAACTTTTGAAATTGCACGTGGAGGTAATTTAG
Reference ( gi|1 ) : CAGGATTTTTTAATTTGGGTTCTGTTATTTCAGTTCGGGTCATAAACCATTATTTGTATTTTGTTACAATATATATATATCG-ACAGTGTTGTT-GAAATTTACCAGTTTGAATGA---TT-TG---A-TGGA---TTAAAATTTC-CTCAGACTG----GT-AAAGTTCAC-AGTGC----ATTT-CATTATTCCGACTG-ATAAAAAT-C----ATG-AAATGTC----A--GATAC-TTCA-AAA--A--G--A-T---TTTC---AACATT----------GAGGAACTCTGTATCAACT-CGCAGATGCACAACTTTTGAAATTGCATGTGGAGGTAATTTAGAATAAAA
gi|14 : AGGATTTTTTAATT-GGGTTCTGTTATTTCAGTTCGGGTCATAAAACATTATCTGTATTTTGTTACAATATATA
gi|2 : ACAATGTATA--------ACAGTGTTGTT-GAAATTTACCAGTCCGAATGA---TT-TG---A-CTGG---TTAAAATCTC-CTTGGACTG----TT-AAAGTTCAC-AGTGC----ATTT-CATT--------------AAAAT-T----CTA-AAATATC----T--AATAT-CTCA-GAA--A--G--AGT---TTTC---AACATTTAATTTGAGAGAGCAAGTTCATATCAAATACGCA-ATGTTCAA
gi|5 : ttagAAT-TGTACACAT---AC-GTCTTCTT-GAAAGTTACCAGTCCAGAGGA---TA-TG---A-TTGG---TTAAATTTGC-CATGGACCA----GT-AAAGTGCAC-AGTGC----ATTT-TATTATTTGGATTG-ATGGAAAT-C----TTG-CAATATA----T--GGTA---TCA-AAG--A--A--G-TAGATTTC---AAtgtatttaagtatttgatttagaaaaa
gi|7 : TATACAAGTA-CGTACAGTGTTCTTTGAAATTTACCAGTCCGACGGA---TT-TG---C-TGGC---TAAGAATGT--CTCGGAC-G----GT-AAAGTTCACTAGTAC----ATTTAAATTATTTGCACTGAATAAAAAT-CTTGAATG-AAA-GT-----A--GAT---TTCA-gaac
gi|4 : gcg-ACAGTGTTGTT-GAAATTTACCAGTTTGAATGA---TT-TG---A-TAGA---TTAAAATTTC-CTCCGACTG----GT-AAAGTTCAC-AGCGC----ATTT-CATTATTCCGACTG-ATAAAAAT-C----ATG-AAATGTC----C--GATAC-TTCA-GAA--A--G--AGT---TTTC---AACATT----------GAAGAACTCTGTATCAACT-CGCAGATGCACAACTTTTGAAATTGCACGTGGAGGTAATTTAGca
gi|9 : -ACAGTGTTCTT-GAAATTTACCAGTCCGACGGA---TT-TGA--A-TGG----CTAAGATGTC-CTCGGACCG----GT-AAAGTTCAC-AGTAC----ATTT-AATTATTTGCACTG-ATAAAAAT-C----TTG-AAATG
gi|3 : cagtacgt-ACAGTGTTGTCCGAAATTTACCGGTCCACATGA---TT-TG---A-CTGG---TTAGAAATTT-CTTACAATG-----T-GA-GTTCAC-AGTGC----ATCT-CATCATTCAGA-TG-ATTAAATC-C----CTGAAAATGTC----T--GATACTTTCT-GAA--A--G--A-G---TTTTGTAAACATT----------aaagtagatttcaca
gi|13 : taaacgactatgtatttaagcagttagccacacacacCAGTGTTCTT-GAAATTTACCAGTCCAAAGAA---CT-TGACTA-TGTACAGTTAAAATTTC-CTCAGACTG----GT-tcctgtgaacaataaatgcatgcaaat
gi|4 : actagGCGCTGT--GAACTTTACCAGTCGGAG-GAAATTT-TA---A-TCTA---TCAAA---TCATTCAAACTG----GT-AAATTTCAta
gi|6 : acagtgttgtTGTTCTT-GAAATTTACCAGACCAAAGGA---TT-TG---ACTGGC---TTAAAATTTC-CT-GGACTG----GT-AAAGCTCAC-AGTACATTAATTT-CATTATTTAGA-TGTATAAAAAT-A----TTG-AAATGTCTGTTAGTGTTAC-TGCA-GAACTA--G--A-----TTTC---AA-----------------GAACTCatttcattattccgactgataaaaatcatgaaatgtccgatacttcagaaagagttttcaacattgaagaactctgtatcaactcgcagatgcacaacttttgaaattgcacgtggaggtaatttag
gi|11 : GTTGT--GGAATTTACCAGTCCGAATGA---TT-TG---A-TTAG---TTAAAATTTC-CTCACACTG----GT-AAAGTTCAC-AATGC----ATTT-CTTTTTTCCGACTG-ATGAAAAT-C----
gi|11 : TTGT--GAACTTTACCAGTGTGAG-GAAATTT-TA---A-CTAA---TCAAA---TCATTCGGACTG----GT-AAATTCCAC-Ac
gi|8 : gtTTCTT-AAAATTTACCAGTCCAAAGGA---TT-TG---ACTGGA----TAAAATTTT-CTTGAACCA----GT-AAAGTTCAC-AGTAC----ATTT-CATTATTCGGACTG-ATAAAAAT-CTT--CTC-AAATGTC----T--GGCAC---CACAAA--A--GTTA-A---TTTC---AA-----------------GAACTCtgcatttcttttttccgactgatgaaaatcc
gi|12 : ttATCTATCAGTCTGAA-AA---TTGTA---A-C--A---TGAAAATTTC-CTCGGACAG----GCGAAAGATGGC-GGTAC----ATTT-CATGAT-----CTG-ATATA-----------G-AAGTGTC----
gi|15 : AGTCTAAAGGA---AT-TG---A-CTGG---TTAAAATTTT-CTCAGACCGGTACGT-AAAGTTCAC-AGTAC----ATTT-CACTcggt
gi|10 : TTC-CTCGGACTG----GT-AAAATTAAC-AGAAC----ATTT-CATTATCTGGACTG-ATTACAATAC----A-A-AAATGTT----C--GGCAC-CACT-AAA--GTTG--A-T---TTCA---AGTCTT------------AGAACGCTATAT
1 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|16 ): TCACGGTCAGGACTTCACAGAACAGGTTAGACCTGTACACCTCTCGT
Alignments
lowQualScore : 2 7777777 11111111 1111111 11 11 1111 1111 2222222222 111 2
lowQualScore : 0 3 6666666 1 7 0 3 33333333 3 3 0 1 8888 2 3 6666 3 33 1 6 666 3 1 2222222 33 66 5 33 7777 0000 7777777777 888 111 1 3 6 1
lowQualScore : . . ....... . . . . ........ . . . . .... . . .... . .. . . ... . . ....... .. .. . .. .... .... .......... ... ... . . . .
lowQualScore : 0 0 5555555 0 3 8 1 99999999 1 1 6 6 9999 9 1 5555 1 99 8 7 999 6 7 7777777 11 99 0 88 0000 1111 6666666666 333 777 0 7 7 0
consensus : NAGGATTTTTTAATTTGGGTTCTGTTATTTCAGTTCGGGTCATAAANCATTATCTGTATTTTGTTACAATATATATATATCGACAGTGTTCTT-GAAATTTACCAGTCCGAAGGATT-TGAC------TGG-TTA-AAATTTCCTCGGACCG----GT-AAAGTTCAC-AGTGC----ATTT-CATTATTCGGACTG-ATAAAAATC--CTG-AAATGTCCG---G---TAC-TTC--A-GAA--AGA-T--TTTC---AA--CA------TTGA-AGAAC---TCTGTATCAACT-CGCAGATGCACAACTTTTGAAATTGCACGTGGAGGTAATTTAG
Reference ( family-6971 ) : NAGGATTTTTTAATT-GGGTTCTGTTATTTCAGTTCGGGTCATAAAACATTATCTGTATTTTGTTACAATATATAG----CAACAGTGTTNTT-GAAATTTACCAGTCCGAAGGATT-TGAT------NGG-TTA-AAATTTCCTCGGACCG----GT-AAAGTTCAC-AGTAC----ATTT-CATTATTCGGACTG-ATAAAAATC--NTG-AAATGTCCG---G---TAC-TTC--A-GAA--AGA-T--TTTC---AA--CA------TTGA-AGAAC---TCTATATCAANTACGCAGATGCNCAACTTTTGAAATTGCACGTGGAGGTAATTTAG
gi|1 : AGGATTTTTTAATTTGGGTTCTGTTATTTCAGTTCGGGTCATAAACCATTATTTGTATTTTGTTACAATATATATATATCGACAGTGTTGTT-GAAATTTACCAGTTTGAATGATT-TGAT------GGA-TTA-AAATTTCCTCAGACTG----GT-AAAGTTCAC-AGTGC----ATTT-CATTATTCCGACTG-ATAAAAATC--ATG-AAATGTCAG---A---TAC-TTC--A-AAA--AGA-T--TTTC---AA--CA------TTGA-GGAAC---TCTGTATCAACT-CGCAGATGCACAACTTTTGAAATTGCATGTGGAGGTAATTTAG
gi|10 : cTTCCTCGGACTG----GT-AAAATTAAC-AGAAC----ATTT-CATTATCTGGACTG-ATTACAATA--CAA-AAATGTTCG---G---CAC---C--ACTAA--AGT-TGATTTC---AAGTC-------TT---AGAAC---GCTATATaataaaa
gi|11 : GTTGT--GGAATTTACCAGTCCGAATGATT-TGAT------TAG-TTA-AAATTTCCTCACACTG----GT-AAAGTTCAC-AATGC----ATTT-CTTTTTTCCGACTG-ATGAAAATC--t
gi|12 : ATCTATCAGTCTGAAA-ATTGTAAC------ATG---A-AAATTTCCTCGGACAG----GCGAAAGATGGC-GGTAC----ATTT-CATGAT-----CTG-ATATA--------G-AAGTGTCCG---G---Tc
gi|13 : AGCAGTGTTCTT-GAAATTTACCAGTCCAAAGAACT-TGACTATGTACAG-TTA-AAATTTCCTCAGACTG----GT-
gi|14 : actAGGATTTTTTAATT-GGGTTCTGTTATTTCAGTTCGGGTCATAAAACATTATCTGTATTTTGTTACAATATATAta
gi|15 : AGTCTAAAGGAAT-TGAC------TGG-TTA-AAATTTTCTCAGACCGGTACGT-AAAGTTCAC-AGTAC----ATTT-CACT
gi|2 : ACAATGTATA-------ACAGTGTTGTT-GAAATTTACCAGTCCGAATGATT-TGAC------TGG-TTA-AAATCTCCTTGGACTG----TT-AAAGTTCAC-AGTGC----ATTT-CATT--------------AAAATT--CTA-AAATATCTA---A---TAT-CTC--A-GAA--AGAGT--TTTC---AA--CATTTAATTTGAGAGAGCAAGTTCATATCAAATACGCA-ATGTTCAA
gi|3 : ttagACAGTGTTGTCCGAAATTTACCGGTCCACATGATT-TGAC------TGG-TTAGAAATTTCTT---ACAAT---GT-GA-GTTCAC-AGTGC----ATCT-CATCATTCAGA-TG-ATTAAATCC--CTGAAAATGTCTG---A---TACTTTC--T-GAA--AGA-G--TTTTGTAAA--CA------TTtgtatttaagtatttgatttagaaaaa
gi|4 : taaacgactatgtatttaagcagttagccacacacacACAGTGTTGTT-GAAATTTACCAGTTTGAATGATT-TGAT------AGA-TTA-AAATTTCCTCCGACTG----GT-AAAGTTCAC-AGCGC----ATTT-CATTATTCCGACTG-ATAAAAATC--ATG-AAATGTCCG---A---TAC-TTC--A-GAA--AGAGT--TTTC---AA--CA------TTGA-AGAAC---TCTGTATCAACT-CGCAGATGCACAACTTTTGAAATTGCACGTGGAGGTAATTTAGtcctgtgaacaataaatgcatgcaaat
gi|5 : GTCTTCTT-GAAAGTTACCAGTCCAGAGGATA-TGAT------TGG-TTA-AATTTGCCATGGACCA----GT-AAAGTGCAC-AGTGC----ATTT-TATTATTTGGATTG-ATGGAAATC--TTG-CAATATATG---G---TA---TCAAA-GAAGTAGA----TTTC---AA--
gi|6 : aattgtacacatacTGTTCTT-GAAATTTACCAGACCAAAGGATT-TGAC------TGGCTTA-AAATTTCCT-GGACTG----GT-AAAGCTCAC-AGTACATTAATTT-CATTATTTAGA-TGTATAAAAATA--TTG-AAATGTCTGTTAGTGTTAC-TGC--A-GAACTAGA-T--TTC-------------------A-AGAAC---TCgaac
gi|7 : ACAGTGTTCTTTGAAATTTACCAGTCCGACGGATT-TGCT-------GG-CTA-AGAATGTCTCGGA-CG----GT-AAAGTTCACTAGTAC----ATTTAAATTATTTGCACTGAATAAAAATC--TTG-AA
gi|8 : gcgtatacaagtacgtTTCTT-AAAATTTACCAGTCCAAAGGATT-TGAC------TGG-ATA-AAATTTTCTTGAACCA----GT-AAAGTTCAC-AGTAC----ATTT-CATTATTCGGACTG-ATAAAAATCTTCTC-AAATGTCTG---G---CAC---C--A-CAA--AAG-T--T------AA--T-------TTCA-AGAAC---TCtgaaagtagatttcaca
gi|9 : ttACAGTGTTCTT-GAAATTTACCAGTCCGACGGATT-TGAA------TGG-CTA-AGATGTCCTCGGACCG----GT-AAAGTTCAC-AGTAC----ATTT-AATTATTTGCACTG-ATAAAAATC--TTG-AAATG
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): TCACGGTCAGGACTTCACAGAACAGGTTAGACCTGTACACCTCTCGT
Alignments
lowQualScore : 1 33333333 1111111 11 11 1111 1111 1111 1
lowQualScore : 5 1 3 88888888 7 0 3 3 888888 3 3 0 1 8888 2 3 6666 3 33 1 6 666 3 1 2222222 33 66 5 33 7777 0000 1111 0
lowQualScore : . . . ........ . . . . ...... . . . . .... . . .... . .. . . ... . . ....... .. .. . .. .... .... .... .
lowQualScore : 5 0 8 22222222 3 8 1 1 888888 1 1 6 6 9999 9 1 5555 1 99 8 7 222 6 7 7777777 11 99 0 88 0000 1111 2222 8
consensus : NAGGATTTTTTAATTTGGGTTCTGTTATTTCAGTTCGGGTCATAAANCATTATCTGTATTTTGTTACAATATATANATATCG-ACAGTGTTCTT-GAAATTTACCAGTCCGAAGGATT-TGAC-T------GG-TTA-AAATTTCCTCGGACCG----GT-AAAGTTCAC-AGTGC----ATTT-CATTATTCGGACTG-ATAAAAATC--CTG-AAATGTCCG---G---TAC-TTC--A-GAA--AGA-T--TTTC---AA--CATT-AAGAACTCTGTATCAACTCGCAGATGCACAACTTTTGAAATTGCACGTGGAGGTAATTTAG
Reference ( family-6971 ) : NAGGATTTTTTAATTTGGGTTCTGTTATTTCAGTTCGGGTCATAAANCATTATCTGTATTTTGTTACAATATATATATATCG-ACAGTGTTCTT-GAAATTTACCAGTCCGAAGGATT-TGAC-T------GG-TTA-AAATTTCCTCGGACCG----GT-AAAGTTCAC-AGTGC----ATTT-CATTATTCGGACTG-ATAAAAATC--CTG-AAATGTCCG---G---TAC-TTC--A-GAA--AGA-T--TTTC---AA--CATTGAAGAACTCTGTATCAACTCGCAGATGCACAACTTTTGAAATTGCACGTGGAGGTAATTTAG
gi|1 : AGGATTTTTTAATTTGGGTTCTGTTATTTCAGTTCGGGTCATAAACCATTATTTGTATTTTGTTACAATATATATATATCG-ACAGTGTTGTT-GAAATTTACCAGTTTGAATGATT-TGAT-G------GA-TTA-AAATTTCCTCAGACTG----GT-AAAGTTCAC-AGTGC----ATTT-CATTATTCCGACTG-ATAAAAATC--ATG-AAATGTCAG---A---TAC-TTC--A-AAA--AGA-T--TTTC---AA--CATTGAGGAACTCTGTATCAACTCGCAGATGCACAACTTTTGAAATTGCATGTGGAGGTAATTTAG
gi|10 : cTTCCTCGGACTG----GT-AAAATTAAC-AGAAC----ATTT-CATTATCTGGACTG-ATTACAATA--CAA-AAATGTTCG---G---CAC---C--ACTAA--AGT-TGATTTC---AAGTC-TT--AGAACGCTATATaataaaa
gi|11 : T-GGAATTTACCAGTCCGAATGATT-TGAT-T------AG-TTA-AAATTTCCTCACACTG----GT-AAAGTTCAC-AATGC----ATTT-CTTTTTTCCGACTG-ATGAAAATC--Ct
gi|12 : gttgATCTATCAGTCTGAAA-ATTGTAACAT------G----A-AAATTTCCTCGGACAG----GCGAAAGATGGC-GGTAC----ATTT-CATGAT-----CTG-ATATA--------G-AAGTGTCCG---G---T
gi|13 : CAGTGTTCTT-GAAATTTACCAGTCCAAAGAACT-TGAC-TATGTACAG-TTA-AAATTTCCTCAGACTG----GT-
gi|14 : actagAGGATTTTTTAATT-GGGTTCTGTTATTTCAGTTCGGGTCATAAAACATTATCTGTATTTTGTTACAATATATAta
gi|15 : AGTCTAAAGGAAT-TGAC-T------GG-TTA-AAATTTTCTCAGACCGGTACGT-AAAGTTCAC-AGTAC----ATTT-CACT
gi|2 : ACAATGTATA--------ACAGTGTTGTT-GAAATTTACCAGTCCGAATGATT-TGAC-T------GG-TTA-AAATCTCCTTGGACTG----TT-AAAGTTCAC-AGTGC----ATTT-CATT--------------AAAATT--CTA-AAATATCTA---A---TAT-CTC--A-GAA--AGAGT--TTTC---AA--CATTTAA
gi|3 : ttag-ACAGTGTTGTCCGAAATTTACCGGTCCACATGATT-TGAC-T------GG-TTAGAAATTTCTT---ACAAT---GT--GAGTTCAC-AGTGC----ATCT-CATCATTCAGA-TG-ATTAAATCC--CTGAAAATGTCTG---A---TACTTTC--T-GAA--AGA-G--TTTTGTAAA--CATTtttgagagagcaagttcatatcaaatacgcaatgttcaatgtatttaagtatttgatttagaaaaa
gi|4 : taaacgactatgtatttaagcagttagccacacacac-ACAGTGTTGTT-GAAATTTACCAGTTTGAATGATT-TGAT-A------GA-TTA-AAATTTCCTCCGACTG----GT-AAAGTTCAC-AGCGC----ATTT-CATTATTCCGACTG-ATAAAAATC--ATG-AAATGTCCG---A---TAC-TTC--A-GAA--AGAGT--TTTC---AA--CATTGAAGAACTCTGTATCAACTCGCAGATGCACAACTTTTGAAATTGCACGTGGAGGTAATTTAGtcctgtgaacaataaatgcatgcaaat
gi|5 : AAT-TGTACACAT---AC-GTCTTCTT-GAAAGTTACCAGTCCAGAGGATA-TGAT-T------GG-TTA-AATTTGCCATGGACCA----GT-AAAGTGCAC-AGTGC----ATTT-TATTATTTGGATTG-ATGGAAATC--TTG-CAATATATG---G---TA---TCAAA-GAAGTAGA----TTTC---AA--
gi|6 : TGTTCTT-GAAATTTACCAGACCAAAGGATT-TGAC-T------GGCTTA-AAATTTCCT-GGACTG----GT-AAAGCTCAC-AGTACATTAATTT-CATTATTTAGA-TGTATAAAAATA--TTG-AAATGTCTGTTAGTGTTAC-TGC--A-GAACTAGA-T--TTC-------------AAGAACTCgaac
gi|7 : TATACAAGTA-CGTACAGTGTTCTTTGAAATTTACCAGTCCGACGGATT-TG-C-T------GG-CTA-AGAATGTCTCGGA-CG----GT-AAAGTTCACTAGTAC----ATTTAAATTATTTGCACTGAATAAAAATC--TTG-AA
gi|8 : gcgTTCTT-AAAATTTACCAGTCCAAAGGATT-TGAC-T------GG-ATA-AAATTTTCTTGAACCA----GT-AAAGTTCAC-AGTAC----ATTT-CATTATTCGGACTG-ATAAAAATCTTCTC-AAATGTCTG---G---CAC---C--A-CAA--AAG-T--T------AA--T-TTCAAGAACTCtgaaagtagatttcaca
gi|9 : tt-ACAGTGTTCTT-GAAATTTACCAGTCCGACGGATT-TGAA-T------GG-CTA-AGATGTCCTCGGACCG----GT-AAAGTTCAC-AGTAC----ATTT-AATTATTTGCACTG-ATAAAAATC--TTG-AAATG
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): TCACGGTCAGGACTTCACAGAACAGGTTAGACCTGTACACCTCTCGT
Alignments
lowQualScore : 1 33333333 1111111 11 11 1111 1
lowQualScore : 5 1 3 55555555 7 0 3 3 888888 3 3 0 1 8888 2 3 6666 3 33 1 6 666 3 1 2222222 33 66 5 33 7777 3 888 1 1
lowQualScore : . . . ........ . . . . ...... . . . . .... . . .... . .. . . ... . . ....... .. .. . .. .... . ... . .
lowQualScore : 5 0 8 55555555 3 8 1 1 888888 1 1 6 6 9999 9 1 5555 1 99 8 7 222 6 7 7777777 11 99 0 88 0000 2 888 9 4
consensus : NAGGATTTTTTAATTTGGGTTCTGTTATTTCAGTTCGGGTCATAAANCATTATCTGTATTTTGTTACAATATATANATATCG-ACAGTGTTCTT-GAAATTTACCAGTCCGAAGGATT-TGAC-T------GG-TTA-AAATTTCCTCGGACCG----GT-AAAGTTCAC-AGTGC----ATTT-CATTATTCGGACTG-ATAAAAATC--CTG-AAATGTCCG---G---TAC-TTC--A-GAA--AGA-T--TTTC---AACATT-AAGAACTCTGTATCAACTCGCAGATGCACAACTTTTGAAATTGCACGTGGAGGTAATTTAG
Reference ( family-6971 ) : NAGGATTTTTTAATTTGGGTTCTGTTATTTCAGTTCGGGTCATAAANCATTATCTGTATTTTGTTACAATATATANATATCG-ACAGTGTTCTT-GAAATTTACCAGTCCGAAGGATT-TGAC-T------GG-TTA-AAATTTCCTCGGACCG----GT-AAAGTTCAC-AGTGC----ATTT-CATTATTCGGACTG-ATAAAAATC--CTG-AAATGTCCG---G---TAC-TTC--A-GAA--AGA-T--TTTC---AACATT-AAGAACTCTGTATCAACTCGCAGATGCACAACTTTTGAAATTGCACGTGGAGGTAATTTAG
gi|1 : AGGATTTTTTAATTTGGGTTCTGTTATTTCAGTTCGGGTCATAAACCATTATTTGTATTTTGTTACAATATATATATATCG-ACAGTGTTGTT-GAAATTTACCAGTTTGAATGATT-TGAT-G------GA-TTA-AAATTTCCTCAGACTG----GT-AAAGTTCAC-AGTGC----ATTT-CATTATTCCGACTG-ATAAAAATC--ATG-AAATGTCAG---A---TAC-TTC--A-AAA--AGA-T--TTTC---AACATTGAGGAACTCTGTATCAACTCGCAGATGCACAACTTTTGAAATTGCATGTGGAGGTAATTTAG
gi|10 : cTTCCTCGGACTG----GT-AAAATTAAC-AGAAC----ATTT-CATTATCTGGACTG-ATTACAATA--CAA-AAATGTTCG---G---CAC---C--ACTAA--AGT-TGATTTC---AAGTCT-TAGAACGCTATATaataaaa
gi|11 : T-GGAATTTACCAGTCCGAATGATT-TGAT-T------AG-TTA-AAATTTCCTCACACTG----GT-AAAGTTCAC-AATGC----ATTT-CTTTTTTCCGACTG-ATGAAAATC--Ct
gi|12 : gttgATCTATCAGTCTGAAA-ATTGTAACAT------G----A-AAATTTCCTCGGACAG----GCGAAAGATGGC-GGTAC----ATTT-CATGAT-----CTG-ATATA--------G-AAGTGTCCG---G---T
gi|13 : CAGTGTTCTT-GAAATTTACCAGTCCAAAGAACT-TGAC-TATGTACAG-TTA-AAATTTCCTCAGACTG----GT-
gi|14 : actagAGGATTTTTTAATT-GGGTTCTGTTATTTCAGTTCGGGTCATAAAACATTATCTGTATTTTGTTACAATATATAta
gi|15 : AGTCTAAAGGAAT-TGAC-T------GG-TTA-AAATTTTCTCAGACCGGTACGT-AAAGTTCAC-AGTAC----ATTT-CACT
gi|2 : ACAATGTATA--------ACAGTGTTGTT-GAAATTTACCAGTCCGAATGATT-TGAC-T------GG-TTA-AAATCTCCTTGGACTG----TT-AAAGTTCAC-AGTGC----ATTT-CATT--------------AAAATT--CTA-AAATATCTA---A---TAT-CTC--A-GAA--AGAGT--TTTC---AACATT-
gi|3 : ttag-ACAGTGTTGTCCGAAATTTACCGGTCCACATGATT-TGAC-T------GG-TTAGAAATTTCTT---ACAAT---GT--GAGTTCAC-AGTGC----ATCT-CATCATTCAGA-TG-ATTAAATCC--CTGAAAATGTCTG---A---TACTTTC--T-GAA--AGA-G--TTTTGTAAACATT-taatttgagagagcaagttcatatcaaatacgcaatgttcaatgtatttaagtatttgatttagaaaaa
gi|4 : taaacgactatgtatttaagcagttagccacacacac-ACAGTGTTGTT-GAAATTTACCAGTTTGAATGATT-TGAT-A------GA-TTA-AAATTTCCTCCGACTG----GT-AAAGTTCAC-AGCGC----ATTT-CATTATTCCGACTG-ATAAAAATC--ATG-AAATGTCCG---A---TAC-TTC--A-GAA--AGAGT--TTTC---AACATTGAAGAACTCTGTATCAACTCGCAGATGCACAACTTTTGAAATTGCACGTGGAGGTAATTTAGtcctgtgaacaataaatgcatgcaaat
gi|5 : AAT-TGTACACAT---AC-GTCTTCTT-GAAAGTTACCAGTCCAGAGGATA-TGAT-T------GG-TTA-AATTTGCCATGGACCA----GT-AAAGTGCAC-AGTGC----ATTT-TATTATTTGGATTG-ATGGAAATC--TTG-CAATATATG---G---TA---TCAAA-GAAGTAGA----TTTC---AA
gi|6 : TGTTCTT-GAAATTTACCAGACCAAAGGATT-TGAC-T------GGCTTA-AAATTTCCT-GGACTG----GT-AAAGCTCAC-AGTACATTAATTT-CATTATTTAGA-TGTATAAAAATA--TTG-AAATGTCTGTTAGTGTTAC-TGC--A-GAACTAGA-T--T----------TC-AAGAACTCgaac
gi|7 : TATACAAGTA-CGTACAGTGTTCTTTGAAATTTACCAGTCCGACGGATT-TG-C-T------GG-CTA-AGAATGTCTCGGA-CG----GT-AAAGTTCACTAGTAC----ATTTAAATTATTTGCACTGAATAAAAATC--TTG-AA
gi|8 : gcgTTCTT-AAAATTTACCAGTCCAAAGGATT-TGAC-T------GG-ATA-AAATTTTCTTGAACCA----GT-AAAGTTCAC-AGTAC----ATTT-CATTATTCGGACTG-ATAAAAATCTTCTC-AAATGTCTG---G---CAC---C--A-CAA--AAG-T--T------AATTTC-AAGAACTCtgaaagtagatttcaca
gi|9 : tt-ACAGTGTTCTT-GAAATTTACCAGTCCGACGGATT-TGAA-T------GG-CTA-AGATGTCCTCGGACCG----GT-AAAGTTCAC-AGTAC----ATTT-AATTATTTGCACTG-ATAAAAATC--TTG-AAATG
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): TCACGGTCAGGACTTCACAGAACAGGTTAGACCTGTACACCTCTCGT
Alignments
lowQualScore : 1 33333333 1111111 11 11 1111 1
lowQualScore : 5 1 3 55555555 7 0 3 3 888888 3 3 0 1 8888 2 3 6666 3 33 1 6 666 3 1 2222222 33 66 5 33 7777 3 888 1 1
lowQualScore : . . . ........ . . . . ...... . . . . .... . . .... . .. . . ... . . ....... .. .. . .. .... . ... . .
lowQualScore : 5 0 8 55555555 3 8 1 1 888888 1 1 6 6 9999 9 1 5555 1 99 8 7 222 6 7 7777777 11 99 0 88 0000 2 888 9 4
consensus : NAGGATTTTTTAATTTGGGTTCTGTTATTTCAGTTCGGGTCATAAANCATTATCTGTATTTTGTTACAATATATANATATCG-ACAGTGTTCTT-GAAATTTACCAGTCCGAAGGATT-TGAC-T------GG-TTA-AAATTTCCTCGGACCG----GT-AAAGTTCAC-AGTGC----ATTT-CATTATTCGGACTG-ATAAAAATC--CTG-AAATGTCCG---G---TAC-TTC--A-GAA--AGA-T--TTTC---AACATT-AAGAACTCTGTATCAACTCGCAGATGCACAACTTTTGAAATTGCACGTGGAGGTAATTTAG
Reference ( family-6971 ) : NAGGATTTTTTAATTTGGGTTCTGTTATTTCAGTTCGGGTCATAAANCATTATCTGTATTTTGTTACAATATATANATATCG-ACAGTGTTCTT-GAAATTTACCAGTCCGAAGGATT-TGAC-T------GG-TTA-AAATTTCCTCGGACCG----GT-AAAGTTCAC-AGTGC----ATTT-CATTATTCGGACTG-ATAAAAATC--CTG-AAATGTCCG---G---TAC-TTC--A-GAA--AGA-T--TTTC---AACATT-AAGAACTCTGTATCAACTCGCAGATGCACAACTTTTGAAATTGCACGTGGAGGTAATTTAG
gi|1 : AGGATTTTTTAATTTGGGTTCTGTTATTTCAGTTCGGGTCATAAACCATTATTTGTATTTTGTTACAATATATATATATCG-ACAGTGTTGTT-GAAATTTACCAGTTTGAATGATT-TGAT-G------GA-TTA-AAATTTCCTCAGACTG----GT-AAAGTTCAC-AGTGC----ATTT-CATTATTCCGACTG-ATAAAAATC--ATG-AAATGTCAG---A---TAC-TTC--A-AAA--AGA-T--TTTC---AACATTGAGGAACTCTGTATCAACTCGCAGATGCACAACTTTTGAAATTGCATGTGGAGGTAATTTAG
gi|10 : cTTCCTCGGACTG----GT-AAAATTAAC-AGAAC----ATTT-CATTATCTGGACTG-ATTACAATA--CAA-AAATGTTCG---G---CAC---C--ACTAA--AGT-TGATTTC---AAGTCT-TAGAACGCTATATaataaaa
gi|11 : T-GGAATTTACCAGTCCGAATGATT-TGAT-T------AG-TTA-AAATTTCCTCACACTG----GT-AAAGTTCAC-AATGC----ATTT-CTTTTTTCCGACTG-ATGAAAATC--Ct
gi|12 : gttgATCTATCAGTCTGAAA-ATTGTAACAT------G----A-AAATTTCCTCGGACAG----GCGAAAGATGGC-GGTAC----ATTT-CATGAT-----CTG-ATATA--------G-AAGTGTCCG---G---T
gi|13 : CAGTGTTCTT-GAAATTTACCAGTCCAAAGAACT-TGAC-TATGTACAG-TTA-AAATTTCCTCAGACTG----GT-
gi|14 : actagAGGATTTTTTAATT-GGGTTCTGTTATTTCAGTTCGGGTCATAAAACATTATCTGTATTTTGTTACAATATATAta
gi|15 : AGTCTAAAGGAAT-TGAC-T------GG-TTA-AAATTTTCTCAGACCGGTACGT-AAAGTTCAC-AGTAC----ATTT-CACT
gi|2 : ACAATGTATA--------ACAGTGTTGTT-GAAATTTACCAGTCCGAATGATT-TGAC-T------GG-TTA-AAATCTCCTTGGACTG----TT-AAAGTTCAC-AGTGC----ATTT-CATT--------------AAAATT--CTA-AAATATCTA---A---TAT-CTC--A-GAA--AGAGT--TTTC---AACATT-
gi|3 : ttag-ACAGTGTTGTCCGAAATTTACCGGTCCACATGATT-TGAC-T------GG-TTAGAAATTTCTT---ACAAT---GT--GAGTTCAC-AGTGC----ATCT-CATCATTCAGA-TG-ATTAAATCC--CTGAAAATGTCTG---A---TACTTTC--T-GAA--AGA-G--TTTTGTAAACATT-taatttgagagagcaagttcatatcaaatacgcaatgttcaatgtatttaagtatttgatttagaaaaa
gi|4 : taaacgactatgtatttaagcagttagccacacacac-ACAGTGTTGTT-GAAATTTACCAGTTTGAATGATT-TGAT-A------GA-TTA-AAATTTCCTCCGACTG----GT-AAAGTTCAC-AGCGC----ATTT-CATTATTCCGACTG-ATAAAAATC--ATG-AAATGTCCG---A---TAC-TTC--A-GAA--AGAGT--TTTC---AACATTGAAGAACTCTGTATCAACTCGCAGATGCACAACTTTTGAAATTGCACGTGGAGGTAATTTAGtcctgtgaacaataaatgcatgcaaat
gi|5 : AAT-TGTACACAT---AC-GTCTTCTT-GAAAGTTACCAGTCCAGAGGATA-TGAT-T------GG-TTA-AATTTGCCATGGACCA----GT-AAAGTGCAC-AGTGC----ATTT-TATTATTTGGATTG-ATGGAAATC--TTG-CAATATATG---G---TA---TCAAA-GAAGTAGA----TTTC---AA
gi|6 : TGTTCTT-GAAATTTACCAGACCAAAGGATT-TGAC-T------GGCTTA-AAATTTCCT-GGACTG----GT-AAAGCTCAC-AGTACATTAATTT-CATTATTTAGA-TGTATAAAAATA--TTG-AAATGTCTGTTAGTGTTAC-TGC--A-GAACTAGA-T--T----------TC-AAGAACTCgaac
gi|7 : TATACAAGTA-CGTACAGTGTTCTTTGAAATTTACCAGTCCGACGGATT-TG-C-T------GG-CTA-AGAATGTCTCGGA-CG----GT-AAAGTTCACTAGTAC----ATTTAAATTATTTGCACTGAATAAAAATC--TTG-AA
gi|8 : gcgTTCTT-AAAATTTACCAGTCCAAAGGATT-TGAC-T------GG-ATA-AAATTTTCTTGAACCA----GT-AAAGTTCAC-AGTAC----ATTT-CATTATTCGGACTG-ATAAAAATCTTCTC-AAATGTCTG---G---CAC---C--A-CAA--AAG-T--T------AATTTC-AAGAACTCtgaaagtagatttcaca
gi|9 : tt-ACAGTGTTCTT-GAAATTTACCAGTCCGACGGATT-TGAA-T------GG-CTA-AGATGTCCTCGGACCG----GT-AAAGTTCAC-AGTAC----ATTT-AATTATTTGCACTG-ATAAAAATC--TTG-AAATG
blockSeqs : . A A AGTACGT C G A ATGTAC C G T GTAC G T ATTA A TG C T TTC A C TTAGTGT TT AA C GT TGA T GTA T G
blockSeqs : G CACAT T . . . . . T T . . . . CC C A C . C G C . . CT GT T . A .
blockSeqs : A . . . . . . . A . . . . . CA C . C . T G T . . . GT T . A .
blockSeqs : . . . . . . . T . . . . . CC C . C . T A T . . . G T . A .
blockSeqs : . . . . . . C . . . . . TG T . C . C A . . . . T T . T .
blockSeqs : . . . . . . T . . . . . TA C . A . T A . . . . T . . . .
blockSeqs : . . . . . . A . . . . . TG C . T . T G . . . . . . .
blockSeqs : . . . . . . T . . . . . CG C . T . T G
blockSeqs : . . . . . . C . . . . . TG . . T .
blockSeqs : . . . . . . T . . . . . . . . T .
blockSeqs : . . . . . C . . . . . . . . .
blockSeqs : . . . . . C . . . . .
blockSeqs : C . .
blockSeqCons : T*
originalCons : NAGGATTTTTTAATTTGGGTTCTGTTATTTCAGTTCGGGTCATAAANCATTATCTGTATTTTGTTACAATATATANATATCG-ACAGTGTTCTT-GAAATTTACCAGTCCGAAGGATT-TGAC-T------GG-TTA-AAATTTCCTCGGACCG----GT-AAAGTTCAC-AGTGC----ATTT-CATTATTCGGACTG-ATAAAAATC--CTG-AAATGTCCG---G---TAC-TTC--A-GAA--AGA-T--TTTC---AACATT-AAGAACTCTGTATCAACTCGCAGATGCACAACTTTTGAAATTGCACGTGGAGGTAATTTAG
finalCons : NAGGATTTTTTAATTTGGGTTCTGTTATTTCAGTTCGGGTCATAAANCATTATCTGTATTTTGTTACAATATATANATATCG-ACAGTGTTCTT-GAAATTTACCAGTCCGAAGGATT-TGAC-T------GG-TTA-AAATTTCCTCGGACCG----GT-AAAGTTCAC-AGTGC----ATTT-CATTATTCGGACTG-ATAAAAATC--CTG-AAATGTCCG---G---TACT-TC--A-GAA--AGA-T--TTTC---AACATT-AAGAACTCTGTATCAACTCGCAGATGCACAACTTTTGAAATTGCACGTGGAGGTAATTTAG
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): TCACGGTCAGGACTTCACAGAACAGGTTAGACCTGTACACCTCTCGT
Alignments
lowQualScore : 1 33333333 1111111 11 11 1111 1
lowQualScore : 5 1 3 55555555 7 0 3 3 888888 3 3 0 1 8888 2 3 6666 3 33 1 6 666 3 1 2222222 33 66 5 33 7777 3 888 1 1
lowQualScore : . . . ........ . . . . ...... . . . . .... . . .... . .. . . ... . . ....... .. .. . .. .... . ... . .
lowQualScore : 5 0 8 55555555 3 8 1 1 888888 1 1 6 6 9999 9 1 5555 1 99 8 7 222 6 7 7777777 11 99 0 88 0000 2 888 9 4
consensus : NAGGATTTTTTAATTTGGGTTCTGTTATTTCAGTTCGGGTCATAAANCATTATCTGTATTTTGTTACAATATATANATATCG-ACAGTGTTCTT-GAAATTTACCAGTCCGAAGGATT-TGAC-T------GG-TTA-AAATTTCCTCGGACCG----GT-AAAGTTCAC-AGTGC----ATTT-CATTATTCGGACTG-ATAAAAATC--CTG-AAATGTCCG---G---TAC-TTC--A-GAA--AGA-T--TTTC---AACATT-AAGAACTCTGTATCAACTCGCAGATGCACAACTTTTGAAATTGCACGTGGAGGTAATTTAG
Reference ( family-6971 ) : NAGGATTTTTTAATTTGGGTTCTGTTATTTCAGTTCGGGTCATAAANCATTATCTGTATTTTGTTACAATATATANATATCG-ACAGTGTTCTT-GAAATTTACCAGTCCGAAGGATT-TGAC-T------GG-TTA-AAATTTCCTCGGACCG----GT-AAAGTTCAC-AGTGC----ATTT-CATTATTCGGACTG-ATAAAAATC--CTG-AAATGTCCG---G---TAC-TTC--A-GAA--AGA-T--TTTC---AACATT-AAGAACTCTGTATCAACTCGCAGATGCACAACTTTTGAAATTGCACGTGGAGGTAATTTAG
gi|1 : AGGATTTTTTAATTTGGGTTCTGTTATTTCAGTTCGGGTCATAAACCATTATTTGTATTTTGTTACAATATATATATATCG-ACAGTGTTGTT-GAAATTTACCAGTTTGAATGATT-TGAT-G------GA-TTA-AAATTTCCTCAGACTG----GT-AAAGTTCAC-AGTGC----ATTT-CATTATTCCGACTG-ATAAAAATC--ATG-AAATGTCAG---A---TAC-TTC--A-AAA--AGA-T--TTTC---AACATTGAGGAACTCTGTATCAACTCGCAGATGCACAACTTTTGAAATTGCATGTGGAGGTAATTTAG
gi|10 : cTTCCTCGGACTG----GT-AAAATTAAC-AGAAC----ATTT-CATTATCTGGACTG-ATTACAATA--CAA-AAATGTTCG---G---CAC---C--ACTAA--AGT-TGATTTC---AAGTCT-TAGAACGCTATATaataaaa
gi|11 : T-GGAATTTACCAGTCCGAATGATT-TGAT-T------AG-TTA-AAATTTCCTCACACTG----GT-AAAGTTCAC-AATGC----ATTT-CTTTTTTCCGACTG-ATGAAAATC--Ct
gi|12 : gttgATCTATCAGTCTGAAA-ATTGTAACAT------G----A-AAATTTCCTCGGACAG----GCGAAAGATGGC-GGTAC----ATTT-CATGAT-----CTG-ATATA--------G-AAGTGTCCG---G---T
gi|13 : CAGTGTTCTT-GAAATTTACCAGTCCAAAGAACT-TGAC-TATGTACAG-TTA-AAATTTCCTCAGACTG----GT-
gi|14 : actagAGGATTTTTTAATT-GGGTTCTGTTATTTCAGTTCGGGTCATAAAACATTATCTGTATTTTGTTACAATATATAta
gi|15 : AGTCTAAAGGAAT-TGAC-T------GG-TTA-AAATTTTCTCAGACCGGTACGT-AAAGTTCAC-AGTAC----ATTT-CACT
gi|2 : ACAATGTATA--------ACAGTGTTGTT-GAAATTTACCAGTCCGAATGATT-TGAC-T------GG-TTA-AAATCTCCTTGGACTG----TT-AAAGTTCAC-AGTGC----ATTT-CATT--------------AAAATT--CTA-AAATATCTA---A---TAT-CTC--A-GAA--AGAGT--TTTC---AACATT-
gi|3 : ttag-ACAGTGTTGTCCGAAATTTACCGGTCCACATGATT-TGAC-T------GG-TTAGAAATTTCTT---ACAAT---GT--GAGTTCAC-AGTGC----ATCT-CATCATTCAGA-TG-ATTAAATCC--CTGAAAATGTCTG---A---TACTTTC--T-GAA--AGA-G--TTTTGTAAACATT-taatttgagagagcaagttcatatcaaatacgcaatgttcaatgtatttaagtatttgatttagaaaaa
gi|4 : taaacgactatgtatttaagcagttagccacacacac-ACAGTGTTGTT-GAAATTTACCAGTTTGAATGATT-TGAT-A------GA-TTA-AAATTTCCTCCGACTG----GT-AAAGTTCAC-AGCGC----ATTT-CATTATTCCGACTG-ATAAAAATC--ATG-AAATGTCCG---A---TAC-TTC--A-GAA--AGAGT--TTTC---AACATTGAAGAACTCTGTATCAACTCGCAGATGCACAACTTTTGAAATTGCACGTGGAGGTAATTTAGtcctgtgaacaataaatgcatgcaaat
gi|5 : AAT-TGTACACAT---AC-GTCTTCTT-GAAAGTTACCAGTCCAGAGGATA-TGAT-T------GG-TTA-AATTTGCCATGGACCA----GT-AAAGTGCAC-AGTGC----ATTT-TATTATTTGGATTG-ATGGAAATC--TTG-CAATATATG---G---TA---TCAAA-GAAGTAGA----TTTC---AA
gi|6 : TGTTCTT-GAAATTTACCAGACCAAAGGATT-TGAC-T------GGCTTA-AAATTTCCT-GGACTG----GT-AAAGCTCAC-AGTACATTAATTT-CATTATTTAGA-TGTATAAAAATA--TTG-AAATGTCTGTTAGTGTTAC-TGC--A-GAACTAGA-T--T----------TC-AAGAACTCgaac
gi|7 : TATACAAGTA-CGTACAGTGTTCTTTGAAATTTACCAGTCCGACGGATT-TG-C-T------GG-CTA-AGAATGTCTCGGA-CG----GT-AAAGTTCACTAGTAC----ATTTAAATTATTTGCACTGAATAAAAATC--TTG-AA
gi|8 : gcgTTCTT-AAAATTTACCAGTCCAAAGGATT-TGAC-T------GG-ATA-AAATTTTCTTGAACCA----GT-AAAGTTCAC-AGTAC----ATTT-CATTATTCGGACTG-ATAAAAATCTTCTC-AAATGTCTG---G---CAC---C--A-CAA--AAG-T--T------AATTTC-AAGAACTCtgaaagtagatttcaca
gi|9 : tt-ACAGTGTTCTT-GAAATTTACCAGTCCGACGGATT-TGAA-T------GG-CTA-AGATGTCCTCGGACCG----GT-AAAGTTCAC-AGTAC----ATTT-AATTATTTGCACTG-ATAAAAATC--TTG-AAATG
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): TCACGGTCAGGACTTCACAGAACAGGTTAGACCTGTACACCTCTCGT