lowQualScore : 1111111111111111111111111111111111111
lowQualScore : 7777777777777777777777777777777777777 1111 1 11111 1 33333333333 11 11111111 333333333 1 22222222 1111111 44444444444444444444444444 111 1 1111 1
lowQualScore : 8888888888888888888888888888888888888 7777 5 2 7 3 66666 5 66666666666 0 1 888 1 3 9 888 666 66 11 3 33333333 2 2 777777777 3 1 66 44444444 5 6666666 8 55 777 4 777 2 1 888 55 55 4 2 66666666666666666666666666 111 777 4 4 3 5 5 55 4 1111 4 7
lowQualScore : ..................................... .... . . . . ..... . ........... . . ... . . . ... ... .. .. . ........ . . ......... . . .. ........ . ....... . .. ... . ... . . ... .. .. . . .......................... ... ... . . . . . .. . .... . .
lowQualScore : 0000000000000000000000000000000000000 0000 6 5 7 3 77777 5 77777777777 6 9 888 4 2 5 888 222 99 99 2 00000000 0 0 888888888 0 9 11 77777777 9 8888888 7 22 000 0 000 5 4 888 00 55 2 4 44444444444444444444444444 000 000 0 0 4 4 0 55 0 5555 0 0
consensus : TATATTCATGTATAAAAATTATGTTGCATTGTGG---------TAGTAT----CATTATTTGATACAAATTCATACAATACNTT-----TCAATTC--A---A---TCAAGTCACGGAATTT---ATCCATTATCGTTNATACGAATAGCCACTAAAAATAAGGGG---GT-G-CAAA--A--GTTTCA-----TTGATAGCTTGTGTGACGNCCTGAT-GCTTGTGTGACCGCCATTTGCACCGATGCATTCTTCAC--ACANAAGACGCATTGAACGAATCAGGT-----A-ATGCAGAANTGCCTTGGGA---ATGTTCCGCCATA-CGC---ACACTGAA-GAA--CGACGCAG-AGCGTC--------C-------A---------GGG---TT---GG-CT-CTTGACGTAGACGTCGTTCCATNTTATCCCAAA--C-ATN---TTC-TATAGACGATAAATCCG
Reference ( gi|3 ) : TATATTCA-----AAATGTTATTTTGCATTTTAGCATACTAGCTAGTAT----CATTATTTGATACAAATTCATACAATACATT-----TCAATTC--A---A---TCAAGTCACGGAATTT---ATCCATTATCGTTTATACGAATAGCCACTAAAAATAAGGGG---GT-G-CAAA--A--GTTTCA-----TTGATAGCTTGTGTGACCGCCTGATGGCTTGTGTGACCGCCATTTGCACCGATGCATTCTTCAC--ACAAAAGACTCATTGAACGAATCCGGT-----A-ATGCAGAATTGCCTTGGGA---ATGTTCCGCCATA-CGC---ACACTGAA-GAA--CGACGCAG-AGTGTC--------C-------A---------GGG---TT---GG-CT-CTTGACGTAAATATCGCTCCATATTATCCCAAA--C-ATT---TTC-TATAGACGTTAAATCCG
gi|10 : TATATTCATGTATAAAAATTATGTTGCATTGTGG-----------GTAT----CAATATTCAATA-----TGATGCATTGTCTT-----TCAATTC--AAACA---TAAAATTGTAGAGTAT---GTCCCTTACGGCTGATATGAATACCCACTGACA-----------GT-T-TGAA--A--G----A-------AATAGGCTGTATGACCGC---AT-----------------TTTGCATAGGTGCAGTCCTCAC--ACGTACAATGCATTTAACAAATCAGG
gi|6 : tactagcggagagaaaaaaagagtatagtttagtagttttatctaTAGTATGTCGCATTATTTAATACAA-----TGCATTGTCTT-----CCTATTC--A---AACATCAAATCAC---ATTTTATATCCATTATGGTTAGAACAAACAGATACTGAGAA-ACGGGG---GTTG-CAAA--AC-GTTTCA-----T-------------GA--GTTTAATAGCGTGTATGACCACCATTGGCACCGATGCACTCTTCACCTAC----GACGCATTGAACGAACCAGGT-----T-ATGCAGAAATGTC-TGGGAAATATATTCCGTCATA-TGCGTGACACACAA--AA--CGACGCAA-AGCGTCAAA-----CGTAGCGGA---------GGGT--TT---AT-CT-CTTGATGCAGACGTCGTTCCAT
gi|8 : aaccgtg----CATTATTTGATACAAATTCATA-AATACATT-----TCA-TTC--A---A----CAAGTCACGGAATTT---ATCCATTATCGTTTATACGAATAGCCACTAAAAATAAGGGG---GT-G-CAAA--A--GTTTCA-----TTGATAGCTTGTGTGACGCCCTGA--GCTTGTGTGA-CGCCATTTGCACCGATGCATTCTTCAC--ACAAAAGA--CATTGAACGAATCCGGT-----A-ATGCAGAATTGCCTTGGGA---ATGTTCCGCCATA-CGC---ACACTGAA-G-A--CGACGCAG-AGGGTC--------C-------A---------GGG---TT---GG-CT-CTTGACGTAAATATCGCTCCATATTAT-CCAAA--C-ATT---TTC-TATAGA
gi|7 : ----CATTATTTGATACAAATTCATA-AATACATT-----TCA-TTC--A---A----CAAGTCACGGAATTT---ATCCATTATCGTTTATACGAATAGCCACTAAAAATAAGGGG---GT-G-CAAA--A--GTTTCA-----TTGATAGCTTGTGTGACGCCCTGA--GCTTGTGTGA-CGCCATTTGCACCGATGCATTCTTCAC--ACAAAAGA--CATTGAACGAATCCGGT-----A-ATGCAGAATTGCCTTGGGA---ATGTTCCGCCATA-CGC---ACACTGAA-G-A--CGACGCAG-AGGGTC--------C-------A---------GGG---TT---GG-CT-CTTGACGTAAATATCGCTCCATATTAT-CCAAA--C-ATT---TTC-TATAGA
gi|5 : ----CATTATTTGATACAAATTCATA-AATACATT-----TCA-TTC--A---A----CAAGTCACGGAATTT---ATCCATTATCGTTTATACGAATAGCCACTAAAAATAAGGGG---GT-G-CAAA--A--GTTTCA-----TTGATAGCTTGTGTGACGCCCTGA--GCTTGTGTGA-CGCCATTTGCACCGATGCATTCTTCAC--ACAAAAGA--CATTGAACGAATCCGGT-----A-ATGCAGAATTGCCTTGGGA---ATGTTCCGCCATA-CGC---ACACTGAA-G-A--CGACGCAG-AGGGTC--------C-------A---------GGG---TT---GG-CT-CTTGACGTAAATATCGCTCCATATTAT-CCAAA--C-ATT---TTCTTATAGA
gi|2 : TTAATATAATACTTTGTTTTTCAATTCCAAC--A---TCAAATCATGGATAAT---GTTCATTATTCTTGATACAAACAGCTATTAAAAA-AGGGGGAAGGG-G-CAAA--AAAGTTTC-------TCA-AGTTT---TA-------GATAGCGTGTATTGCTGCCATTCACACCGATGCAATCTCCGC--AC------CT------AC-AATCAGGTT----A-ATAT-GAA--------GAA---AC---CCGTTATA-TGC---ACAATAGA-CAA--CGATACTA-AGTGAC--------C-------AACGTAGAAGGGG---TTTTTGG-CT-CTTGACGTAGACGTTGTTCCATTTCATCCCAAA--C-ATCAAGTTT-TATAGACAATAAACC
gi|11 : tatTCACGGATTGT---GTCTATTATGGTTGATACGAACAGCCACTGAAAAAAAGAGG---GC-C-CTAACCA--GTTTCACAAGTTTAACAGC--GTGT-AC------A------GTATGACTGCAATTTGCACTAATGCATTCCGCAC--ACCTACAACACATTGAAGAAACCAAAT-----T-ATGCAG----------------ATGTTTCGCCATA-TGT---GC----AA-GAA--CAAAGCAA-Aacgtgacattgaaggtcagatagtcactataaacacgtgcggtgtgaagtcgtgcgttttcctgctgcagaacgacgttacactggttgttgtgaatgaatggaatgacgtgccgacatacaatatctcatcaccgtagtgtatgccggttaa
gi|9 : agaT---ATCCATTATCGTTTATACGAATAGCCACTAAAAATAAGGGG---GT-GCCAAA--A--G-TTCA-----TTGATAGCTTGTGTGACCGCCTGATGGCTTGTGTGACCGCCATTTGCACCGATGCATTCTTCAC--ACAAAAGACTCATTGAACGAATCCGGT-----A-ATGCAGAATTGCCTTGGGA---ATGTTCCGCCATA-CGC---ACACTGAA-GAA--CGACGCAG-AGTGGC--------C-------A---------GGG---TT---GG-CT-CTTGACGTAAATATCGCTCCATATTATCCC-AA--C-ATT---TTC-TATaccaccaatgcagcaaggattttcaaacatgttctacagacgataaatccggtga
gi|12 : ATTCTTCAC--ATCTACGATGCATTCATGGAATCAGAT-----T-ATGCAGAAATGCCTGGAGA---ATGTTCTGCCATA-TGC---ATAGTAAA-GAA--CGCCGCA--ACCCCC--------CCCCCA--A---------CCG---TT---GGCCT-CTTGACGAAGA---CGTTCCATTTCAAGCCAAATGT-ATG---TTC-TATAGGCAATACATC
gi|13 : gtttcacaactttgaaagcaagtactagtattatcgcaaggATTGAACAAATCGGGTTAATAATATGCAGAAATGCCCGAGGA---ATGTTTAGCTATG-TGC---GCAATAAAAGAA--CGATGAAA-AGCATCAAACGTAGC-------A---------AGGGGTTT---GG-CT-CTTGACATAGACATCATTCTATTTCAT-CCAAA--CAATG---TTC-TATAGGCGATAAATC
gi|17 : tTCAGGT-----A-ATGCAGAAATGCCTGGGAA---GTGTTCGGTTATATTGC---TCAATAAA-AAAAGCTACGCAA-AGCATC--------C-------A---------ACG---TA---GG-
gi|4 : caac--CAACGTAGCAGTG----------------------------AGT---TT---AG-CCACTTGACGTAAACGTCATTCCATTTAACCCCAAA--C-ATG---TCC-TACAGGCGATAAATCggggca
gi|1 : aaagaaacaagtaacagattatgtccaataaagaaggacaaaaagctac-CTTGACGTAGACGTCGTTCCATTTTATCCCAAA--C-ACG---TTC-TATAttgtgatattgcaagccaaggtagcaaaaacacgttctcctgcggtaggcgcgttcaacaaacggcctatgcagtgttctgtttcatgcttgcctgcactgaagaatgacgttacactggtctgttgtgaatgaatggaatgaagtgttgatctcgtcacgatagcatacgccggttaaattggcctccactatgatcaaacgtt
gi|11 : CAAA--C-ATG---TTC-TACAGACGATAAATCCGtaggaggaaaattcaggccatggtagcacattcacgttttgtgcggcggtgtgttgttatgctgcagaatgacgtaacgttggttgttgtgaatgaatggaatgacgtgctggcgtacaatatcgtcacgatagcatatgccggttaaaatgctctccactttcaccatatgttgtaaatccagaccagaccatgtaacgctccctccgctgaattggcggcgctgaaatgcgcatacgttaatgtagcgttctccgacacgacggtaagctcgggcacgaccgtgacgtcactgctgtcgtgatgaaatatccactcatccggaaatagaacttccgttgttgaaacggtaatggttcctacaccacgcaaacttcccaacacggtgatgtcagagcagaacagggctggccatcaaaaagaatcgaacgcgatatttaacaaatg
3 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|14 ): ACTAGCGGGGGAAAAGAAGCTGTGTCGTTTAGTAATTTTAAAGCACAAAATAAAATGTTGCATTATGTATATCATTATTTAATATAATGCATTGTCTGACTCTTTCAATTCAAA
Unaligned ( gi|15 ): GTGTAGTTTAGTAATTTTATTTACAGATTCATATACCAAATGCAATGTTGTATAATGTATATCATTATTTGATATATTAGATTGTCTTTCGATCGCATAATTATGCAAAGT
Unaligned ( gi|16 ): TACCGGAAAAAAGAAACTAGTTTTATAGATTCATATACAAAATATCATGTTGCATTATGTATATCATTATTTAATGTGATACATTGTCTTTCAATCA
Alignments
lowQualScore : 11111 1 444444444444 1111 1 11111 22222222 11 11111 33333333333 11 1111111 33333333333333333333333333 1
lowQualScore : 33333 3 3 555555555555 2 2222 4 4 2 0 0 1 22222 9 77 88888888 0 777 0 1 7 777 4 4 66 00 11111 3 0 2 88888888888 1 9 1 5 77 2 4444444 5 33 666 3 666 1 0 666 55 1 1 66666666666666666666666666 999 555 3 3 44 33 1 2 55 3 7777 3 777
lowQualScore : ..... . . ............ . .... . . . . . . ..... . .. ........ . ... . . . ... . . .. .. ..... . . . ........... . . . . .. . ....... . .. ... . ... . . ... .. . . .......................... ... ... . . .. .. . . .. . .... . ...
lowQualScore : 00000 3 7 222222222222 5 1111 3 9 5 8 8 0 55555 4 99 77777777 5 888 1 0 4 888 4 4 11 66 11111 6 8 9 33333333333 7 4 0 5 33 2 5555555 8 11 444 6 444 4 4 333 00 8 2 00000000000000000000000000 222 888 3 3 66 00 0 7 00 6 4444 6 000
consensus : TATATTCATGTACAAAA-ATTATGTTGCATTNTGG---------TAGTAT----CATTATTTGATACAAATTCATACAATACNTT-----TCAATTC--A---A---TCAAGTCACGGAATTT---ATCCATTATCGTTTATACGAATAGCCACTAAAAATAAGGGG---GT-GC-AAA--A--GTTTCA-----TTGATAGCTTGTGTGACG-CCTGAT-G-CTTGTGTGACCGCCATTTGCACCGATGCATTCTTCACACANAAGAC-CATTGAACGAATCNGGT-----A-ATGCAGAANTGCCTTGGGA---ATGTTCCGCCATA-CGC---ACACTGAA-GAA--CGACGCAGAGCGTC--------C-------A---------GGG---TT---GG-CT-CTTGACGTAG--ACGTCGCTCCATNTTATCCCAAA--C-AT---GTTC-TATA---GACGATAAATCCG
Reference ( family-6866 ) : TATATTCATGTATAAAA-ATTATGTTGCATTGTGG---------TAGTAT----CATTATTTGATACAAATTCATACAATACNTT-----TCAATTC--A---A---TCAAGTCACGGAATTT---ATCCATTATCGTTNATACGAATAGCCACTAAAAATAAGGGG---GT-GC-AAA--A--GTTTCA-----TTGATAGCTTGTGTGACGNCCTGAT-G-CTTGTGTGACCGCCATTTGCACCGATGCATTCTTCACACANAAGACGCATTGAACGAATCAGGT-----A-ATGCAGAANTGCCTTGGGA---ATGTTCCGCCATA-CGC---ACACTGAA-GAA--CGACGCAGAGCGTC--------C-------A---------GGG---TT---GG-CT-CTTGACGTAG--ACGTCGTTCCATNTTATCCCAAA--C-AT---NTTC-TATA---GACGATAAATCCG
gi|1 : -CTTGACGTAG--ACGTCGTTCCATTTTATCCCAAA--C-AC---GTTC-TATATAGGAGGA-AAATTC
gi|10 : TATATTCATGTATAAAA-ATTATGTTGCATTGTGG-----------GTAT----CAATATTCAATA-----TGATGCATTGTCTT-----TCAATTC--AAACA---TAAAATTGTAGAGTAT---GTCCCTTACGGCTGATATGAATACCCACTGACA-----------GT-TT-GAA--A--G----A-------AATAGGCTGTATGAC---------------------CGCATTTTGCATAGGTGCAGTCCTCACACGTACAATGCATTTAACAAATCAGGaggccatggtagcacattcacgttttgtgcggcggtgtgttgttatgctgcagaatgacgtaacgttggttgttgtgaatgaatggaatgacgtgctggcgtacaatatcgtcacgatagcatatgccggttaaaatgctctccactttcaccatatgttgtaaatccagaccagaccatgtaacgctccctccgctgaattggcggcgctgaaatgcgcatacgttaatgtagcgttctccgacacgacggtaagctcgggcacgaccgtgacgtcactgctgtcgtgatgaaatatccactcatccggaaatagaacttccgttgttgaaacggtaatggttcctacaccacgcaaacttcccaacacggtgatgtcagagcagaacagggctggccatcaaaaagaatcgaacgcgatatttaacaaatg
gi|11 : tactagcggagagaaaaaaagagtatagtttagtagttttatctaTCACGGATTGT---GTCTATTATGGTTGATACGAACAGCCACTGAAAAAAAGAGG---GC-CC-TAACCA--GTTTCACAAGTTTAACAGC--GTGT-ACA-------------GTATGACTGCAATTTGCACTAATGCATTCCGCACACCTACAACACATTGAAGAAACCAAAT-----T-ATGCAG----------------ATGTTTCGCCATA-TGT---GC----AA-GAA--CAAAGCAAAACCAC--------C-------A------------------------------ATGCAGCAAGG-------ATTTT----CAAA--C-AT---GTTC-TACA---GACGATAAATCCG
gi|12 : agaATTCTTCACATCTACGATGCATTCATGGAATCAGAT-----T-ATGCAGAAATGCCTGGAGA---ATGTTCTGCCATA-TGC---ATAGTAAA-GAA--CGCCGCA-ACCCCC--------CCCCCA--A---------CCG---TT---GGCCT-CTTGACGAAG--A---CGTTCCATTTCAAGCCAAATGT-AT---GTTC-TATA---GGCAATACATCgtga
gi|13 : gtttcacaactttgaaagcaagtactagtattatcgcaaggATTGAACAAATCGGGTTAATAATATGCAGAAATGCCCGAGGA---ATGTTTAGCTATG-TGC---GCAATAAAAGAA--CGATGAAAAGCATCAAACGTAGC-------A---------AGGGGTTT---GG-CT-CTTGACATAG--ACATCATTCTATTTCAT-CCAAA--CAAT---GTTC-TATA---GGCGATAAATC
gi|16 : tTAGATTCATATACAAAATATCATGTTGCATTAT-G---------TA-TAT----CATTATTTAATG-----TGATACATTGTCTT-----TCAAT
gi|17 : taccggaaaaaagaaactagttttaTCAGGT-----A-ATGCAGAAATGCCTGGGAA---GTGTTCGGTTATATTGC---TCAATAAA-AAAAGCTACGCAAAGCATC--------C-------A---------ACG---TA---GG-ca
gi|2 : caacTTAATATAATACTTTGTTTTTCAATTCCAAC--A---TCAAATCATGGATAAT---GTTCATTATTCTTGATACAAACAGCTATTAAAAA-AGGGGGAAGGG-GC-AAA--AAAGTTTC-------TCA-AGTTT---TA-------GATAG-CGTGTATTGCTGCCATTCACACCGATGCAATCTCCGCACCTA------------C-AATCAGGTT----A-ATAT-GAA--------GAA---AC---CCGTTATA-TGC---ACAATAGA-CAA--CGATACTAAGTGAC--------C-------AACGTAGAAGGGG---TTTTTGG-CT-CTTGACGTAG--ACGTTGTTCCATTTCATCCCAAA--C-ATCAAGTTT-TATA---GACAATAAACCggggca
gi|3 : tatTATATTCA-----AAAT-GTTATTTTGCATTTTAGCATACTAGCTAGTAT----CATTATTTGATACAAATTCATACAATACATT-----TCAATTC--A---A---TCAAGTCACGGAATTT---ATCCATTATCGTTTATACGAATAGCCACTAAAAATAAGGGG---GT-GC-AAA--A--GTTTCA-----TTGATAGCTTGTGTGACCGCCTGAT-GGCTTGTGTGACCGCCATTTGCACCGATGCATTCTTCACACAAAAGACTCATTGAACGAATCCGGT-----A-ATGCAGAATTGCCTTGGGA---ATGTTCCGCCATA-CGC---ACACTGAA-GAA--CGACGCAGAGTGTC--------C-------A---------GGG---TT---GG-CT-CTTGACGTAA--ATATCGCTCCATATTATCCCAAA--C-AT---TTTC-TATA---GACGTTAAATCCGacgtgacattgaaggtcagatagtcactataaacacgtgcggtgtgaagtcgtgcgttttcctgctgcagaacgacgttacactggttgttgtgaatgaatggaatgacgtgccgacatacaatatctcatcaccgtagtgtatgccggttaa
gi|4 : ---TT---AG-CCACTTGACGTAA--ACGTCATTCCATTTAACCCCAAA--C-AT---GTCC-TACA---GGCGATAAATC
gi|5 : aaagaaacaagtaacagattatgtccaataaagaaggacaaaaagctaccaacgtagcagtgagt----CATTATTTGATACAAATTCATA-AATACATT-----TCA-TTC--A---A----CAAGTCACGGAATTT---ATCCATTATCGTTTATACGAATAGCCACTAAAAATAAGGGG---GT-GC-AAA--A--GTTTCA-----TTGATAGCTTGTGTGACGCCCTGA--G-CTTGTGTGA-CGCCATTTGCACCGATGCATTCTTCACACAAAAGA--CATTGAACGAATCCGGT-----A-ATGCAGAATTGCCTTGGGA---ATGTTCCGCCATA-CGC---ACACTGAA-G-A--CGACGCAGAGGGTC--------C-------A---------GGG---TT---GG-CT-CTTGACGTAA--ATATCGCTCCATATTAT-CCAAA--C-AT---TTTCTTATA---GAttgtgatattgcaagccaaggtagcaaaaacacgttctcctgcggtaggcgcgttcaacaaacggcctatgcagtgttctgtttcatgcttgcctgcactgaagaatgacgttacactggtctgttgtgaatgaatggaatgaagtgttgatctcgtcacgatagcatacgccggttaaattggcctccactatgatcaaacgtt
gi|6 : G---------TAGTATGTCGCATTATTTAATACAA-----TGCATTGTCTT-----CCTATTC--A---AACATCAAATCAC---ATTTTATATCCATTATGGTTAGAACAAACAGATACTGAGAA-ACGGGG---GTTGC-AAA--AC-GTTTCA-----T-GA--------GT------TTAATAG-CGTGTATGACCACCATTGGCACCGATGCACTCTTCACCTAC--GACGCATTGAACGAACCAGGT-----T-ATGCAGAAATGTC-TGGGAAATATATTCCGTCATA-TGCGTGACACACAA--AA--CGACGCAAAGCGTCAAA-----CGTAGCGGA---------GGGT--TT---AT-CT-CTTGATGCAG--ACGTCGTTCCAT
gi|7 : aaccgt----CATTATTTGATACAAATTCATA-AATACATT-----TCA-TTC--A---A----CAAGTCACGGAATTT---ATCCATTATCGTTTATACGAATAGCCACTAAAAATAAGGGG---GT-GC-AAA--A--GTTTCA-----TTGATAGCTTGTGTGACGCCCTGA--G-CTTGTGTGA-CGCCATTTGCACCGATGCATTCTTCACACAAAAGA--CATTGAACGAATCCGGT-----A-ATGCAGAATTGCCTTGGGA---ATGTTCCGCCATA-CGC---ACACTGAA-G-A--CGACGCAGAGGGTC--------C-------A---------GGG---TT---GG-CT-CTTGACGTAA--ATATCGCTCCATATTAT-CCAAA--C-AT---TTTC-TATA---GA
gi|8 : ----CATTATTTGATACAAATTCATA-AATACATT-----TCA-TTC--A---A----CAAGTCACGGAATTT---ATCCATTATCGTTTATACGAATAGCCACTAAAAATAAGGGG---GT-GC-AAA--A--GTTTCA-----TTGATAGCTTGTGTGACGCCCTGA--G-CTTGTGTGA-CGCCATTTGCACCGATGCATTCTTCACACAAAAGA--CATTGAACGAATCCGGT-----A-ATGCAGAATTGCCTTGGGA---ATGTTCCGCCATA-CGC---ACACTGAA-G-A--CGACGCAGAGGGTC--------C-------A---------GGG---TT---GG-CT-CTTGACGTAA--ATATCGCTCCATATTAT-CCAAA--C-AT---TTTC-TATA---GA
gi|9 : T---ATCCATTATCGTTTATACGAATAGCCACTAAAAATAAGGGG---GT-GCCAAA--A--GTT-CA-----TTGATAGCTTGTGTGACCGCCTGAT-GGCTTGTGTGACCGCCATTTGCACCGATGCATTCTTCACACAAAAGACTCATTGAACGAATCCGGT-----A-ATGCAGAATTGCCTTGGGA---ATGTTCCGCCATA-CGC---ACACTGAA-GAA--CGACGCAGAGTGGC--------C-------A---------GGG---TT---GG-CT-CTTGACGTAA--ATATCGCTCCATATTATCCC-AA--C-AT---TTTC-TAT
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|14 ): ACTAGCGGGGGAAAAGAAGCTGTGTCGTTTAGTAATTTTAAAGCACAAAATAAAATGTTGCATTATGTATATCATTATTTAATATAATGCATTGTCTGACTCTTTCAATTCAAA
Unaligned ( gi|15 ): GTGTAGTTTAGTAATTTTATTTACAGATTCATATACCAAATGCAATGTTGTATAATGTATATCATTATTTGATATATTAGATTGTCTTTCGATCGCATAATTATGCAAAGT
Alignments
lowQualScore : 2222 44444444444444 11111111 11111 22222222 11 11111 4444444444444 33 1111111 33333333333333333333333333 1
lowQualScore : 44 4444 1 55555555555555 9999 6666 1 55555555 2 1 11111 7 66 55555555 0 777 0 1 7 777 4 4 66 00 11111 0 0 5555555555555 1 6 5555 22 1 4444444 5 33 666 3 666 1 0 666 55 1 1 66666666666666666666666666 999 555 3 3 44 0 1 2 55 3 7777 3 777
lowQualScore : .. .... . .............. .... .... . ........ . . ..... . .. ........ . ... . . . ... . . .. .. ..... . . ............. . . .... .. . ....... . .. ... . ... . . ... .. . . .......................... ... ... . . .. . . . .. . .... . ...
lowQualScore : 66 6666 0 77777777777777 4444 6666 1 66666666 3 0 11111 3 99 55555555 5 888 1 9 4 888 4 4 11 66 11111 8 8 1111111111111 7 7 9999 22 0 5555555 8 11 444 6 444 4 4 333 00 8 2 00000000000000000000000000 222 888 3 3 66 8 0 7 00 6 7777 6 000
consensus : TATATTCATGTACAAAATATNATGTTGCATTATGG---------TAGTAT----CATTATTTGATACAAATTCAT------ACAATACNTT-----TCAATTC--A---A---TCAAGTCACGGAATTT---ATCCATTATCGTTTATACGAATAGCCACTAAAAATAAGGGG---GT-GC-AAA--A--GTTTCA-----TTGATAGCTTGTGTGAC-G-CCTGAT-G-CTTGTGTGACCGCCATTTGCACCGATGCATTCTTCACACANAAGAC-CATTGAACGAATCNGGT-----A-ATGCAGAANTGCCTTGGGA---ATGTTCCGCCATA-CGC---ACACTGAA-GAA--CGACGCAGAGCGTC--------C-------A---------GGG---TT---GG-CT-CTTGACGTAG--ACGTCGCTCCATNTTATCCCAAA--C-AT---GTTC-TATA---GACGATAAATCCG
Reference ( family-6866 ) : TATATTCATGTACAAAA-ATTATGTTGCATTNTGG---------TAGTAT----CATTATTTGATACAAATTCAT------ACAATACNTT-----TCAATTC--A---A---TCAAGTCACGGAATTT---ATCCATTATCGTTTATACGAATAGCCACTAAAAATAAGGGG---GT-GC-AAA--A--GTTTCA-----TTGATAGCTTGTGTGAC-G-CCTGAT-G-CTTGTGTGACCGCCATTTGCACCGATGCATTCTTCACACANAAGAC-CATTGAACGAATCNGGT-----A-ATGCAGAANTGCCTTGGGA---ATGTTCCGCCATA-CGC---ACACTGAA-GAA--CGACGCAGAGCGTC--------C-------A---------GGG---TT---GG-CT-CTTGACGTAG--ACGTCGCTCCATNTTATCCCAAA--C-AT---GTTC-TATA---GACGATAAATCCG
gi|1 : -CTTGACGTAG--ACGTCGTTCCATTTTATCCCAAA--C-AC---GTTC-TATATAGGAGGA-AAATTC
gi|10 : TATATTCATGTATAAAA-ATTATGTTGCATTGTGG-----------GTAT----CAATATTCAATA-----TGAT------GCATTGTCTT-----TCAATTC--AAACA---TAAAATTGTAGAGTAT---GTCCCTTACGGCTGATATGAATACCCACTGACA-----------GT-TT-GAA--A--G----A-------AATAGGCTGTATGA----------------------CCGCATTTTGCATAGGTGCAGTCCTCACACGTACAATGCATTTAACAAATCAGGaggccatggtagcacattcacgttttgtgcggcggtgtgttgttatgctgcagaatgacgtaacgttggttgttgtgaatgaatggaatgacgtgctggcgtacaatatcgtcacgatagcatatgccggttaaaatgctctccactttcaccatatgttgtaaatccagaccagaccatgtaacgctccctccgctgaattggcggcgctgaaatgcgcatacgttaatgtagcgttctccgacacgacggtaagctcgggcacgaccgtgacgtcactgctgtcgtgatgaaatatccactcatccggaaatagaacttccgttgttgaaacggtaatggttcctacaccacgcaaacttcccaacacggtgatgtcagagcagaacagggctggccatcaaaaagaatcgaacgcgatatttaacaaatg
gi|11 : tactagcggagagaaaaaaagagtatagtttagtagttttatctaTCACGGATTGT---GTCTATTATGGTTGATACGAACAGCCACTGAAAAAAAGAGG---GC-CC-TAACCA--GTTTCACAAGTTTAACAGC--GTGT-AC-A-------------GTATGACTGCAATTTGCACTAATGCATTCCGCACACCTACAACACATTGAAGAAACCAAAT-----T-ATGCAG----------------ATGTTTCGCCATA-TGT---GC----AA-GAA--CAAAGCAAAACCAC--------C-------A------------------------------ATGCAGCAAGG-------ATTTT----CAAA--C-AT---GTTC-TACA---GACGATAAATCCG
gi|12 : agaATTCTTCACATCTACGATGCATTCATGGAATCAGAT-----T-ATGCAGAAATGCCTGGAGA---ATGTTCTGCCATA-TGC---ATAGTAAA-GAA--CGCCGCA-ACCCCC--------CCCCCA--A---------CCG---TT---GGCCT-CTTGACGAAG--ACGT---TCCATTTCAAGCCAAATGT-AT---GTTC-TATA---GGCAATACATCgtga
gi|13 : gtttcacaactttgaaagcaagtactagtattatcgcaaggATTGAACAAATCGGGTTAATAATATGCAGAAATGCCCGAGGA---ATGTTTAGCTATG-TGC---GCAATAAAAGAA--CGATGAAAAGCATCAAACGTAGC-------A---------AGGGGTTT---GG-CT-CTTGACATAG--ACATCATTCTATTTCAT-CCAAA--CAAT---GTTC-TATA---GGCGATAAATC
gi|14 : tGCACAAAATAAAATGTTGCATTATG----------TA-TAT----CATTATTTAATAT-AATGCATTGTCTGAC----TCTT-----TCAATTC--A---A---
gi|15 : actagcgggggaaaagaagctgtgtcgtttagtaattttaaaATTCATATACCAAATGCAATGTTGTATAATG----------TA-TAT----CATTATTTGATATAa
gi|16 : gtgtagtttagtaattttatttacagTAGATTCATATACAAAATATCATGTTGCATTAT-G---------TA-TAT----CATTATTTAATG-----TGAT------ACATTGTCTT-----TCAATttagattgtctttcgatcgcataattatgcaaagt
gi|17 : taccggaaaaaagaaactagttttaTCAGGT-----A-ATGCAGAAATGCCTGGGAA---GTGTTCGGTTATATTGC---TCAATAAA-AAAAGCTACGCAAAGCATC--------C-------A---------ACG---TA---GG-ca
gi|2 : caacTTAAT------ATAATACTTTGTTTTTCAATTCCAAC--A---TCAAATCATGGATAAT---GTTCATTATTCTTGATACAAACAGCTATTAAAAA-AGGGGGAAGGG-GC-AAA--AAAGTTTC-------TCA-AGTTT---TA--------GATAG-CGTGTATTGCTGCCATTCACACCGATGCAATCTCCGCAC------C-TAC------AATCAGGTT----A-ATAT-GAA--------GAA---AC---CCGTTATA-TGC---ACAATAGA-CAA--CGATACTAAGTGAC--------C-------AACGTAGAAGGGG---TTTTTGG-CT-CTTGACGTAG--ACGTTGTTCCATTTCATCCCAAA--C-ATCAAGTTT-TATA---GACAATAAACCggggca
gi|3 : tatTATATTCA-----AAAT-GTTATTTTGCATTTTAGCATACTAGCTAGTAT----CATTATTTGATACAAATTCAT------ACAATACATT-----TCAATTC--A---A---TCAAGTCACGGAATTT---ATCCATTATCGTTTATACGAATAGCCACTAAAAATAAGGGG---GT-GC-AAA--A--GTTTCA-----TTGATAGCTTGTGTGACCG-CCTGAT-GGCTTGTGTGACCGCCATTTGCACCGATGCATTCTTCACACAAAAGACTCATTGAACGAATCCGGT-----A-ATGCAGAATTGCCTTGGGA---ATGTTCCGCCATA-CGC---ACACTGAA-GAA--CGACGCAGAGTGTC--------C-------A---------GGG---TT---GG-CT-CTTGACGTAA--ATATCGCTCCATATTATCCCAAA--C-AT---TTTC-TATA---GACGTTAAATCCGacgtgacattgaaggtcagatagtcactataaacacgtgcggtgtgaagtcgtgcgttttcctgctgcagaacgacgttacactggttgttgtgaatgaatggaatgacgtgccgacatacaatatctcatcaccgtagtgtatgccggttaa
gi|4 : ---TT---AG-CCACTTGACGTAA--ACGTCATTCCATTTAACCCCAAA--C-AT---GTCC-TACA---GGCGATAAATC
gi|5 : aaagaaacaagtaacagattatgtccaataaagaaggacaaaaagctaccaacgtagcagtgagt----CATTATTTGATACAAATTCAT------A-AATACATT-----TCA-TTC--A---A----CAAGTCACGGAATTT---ATCCATTATCGTTTATACGAATAGCCACTAAAAATAAGGGG---GT-GC-AAA--A--GTTTCA-----TTGATAGCTTGTGTGAC-GCCCTGA--G-CTTGTGTGA-CGCCATTTGCACCGATGCATTCTTCACACAAAAGA--CATTGAACGAATCCGGT-----A-ATGCAGAATTGCCTTGGGA---ATGTTCCGCCATA-CGC---ACACTGAA-G-A--CGACGCAGAGGGTC--------C-------A---------GGG---TT---GG-CT-CTTGACGTAA--ATATCGCTCCATATTAT-CCAAA--C-AT---TTTCTTATA---GAttgtgatattgcaagccaaggtagcaaaaacacgttctcctgcggtaggcgcgttcaacaaacggcctatgcagtgttctgtttcatgcttgcctgcactgaagaatgacgttacactggtctgttgtgaatgaatggaatgaagtgttgatctcgtcacgatagcatacgccggttaaattggcctccactatgatcaaacgtt
gi|6 : G---------TAGTATGTCGCATTATTTAATACAA-----T------GCATTGTCTT-----CCTATTC--A---AACATCAAATCAC---ATTTTATATCCATTATGGTTAGAACAAACAGATACTGAGAA-ACGGGG---GTTGC-AAA--AC-GTTTCA-----T-------------GA--G-TTTAATAG-CGTGTATGACCACCATTGGCACCGATGCACTCTTCACCTAC--GACGCATTGAACGAACCAGGT-----T-ATGCAGAAATGTC-TGGGAAATATATTCCGTCATA-TGCGTGACACACAA--AA--CGACGCAAAGCGTCAAA-----CGTAGCGGA---------GGGT--TT---AT-CT-CTTGATGCAG--ACGTCGTTCCAT
gi|7 : aaccgt----CATTATTTGATACAAATTCAT------A-AATACATT-----TCA-TTC--A---A----CAAGTCACGGAATTT---ATCCATTATCGTTTATACGAATAGCCACTAAAAATAAGGGG---GT-GC-AAA--A--GTTTCA-----TTGATAGCTTGTGTGAC-GCCCTGA--G-CTTGTGTGA-CGCCATTTGCACCGATGCATTCTTCACACAAAAGA--CATTGAACGAATCCGGT-----A-ATGCAGAATTGCCTTGGGA---ATGTTCCGCCATA-CGC---ACACTGAA-G-A--CGACGCAGAGGGTC--------C-------A---------GGG---TT---GG-CT-CTTGACGTAA--ATATCGCTCCATATTAT-CCAAA--C-AT---TTTC-TATA---GA
gi|8 : ----CATTATTTGATACAAATTCAT------A-AATACATT-----TCA-TTC--A---A----CAAGTCACGGAATTT---ATCCATTATCGTTTATACGAATAGCCACTAAAAATAAGGGG---GT-GC-AAA--A--GTTTCA-----TTGATAGCTTGTGTGAC-GCCCTGA--G-CTTGTGTGA-CGCCATTTGCACCGATGCATTCTTCACACAAAAGA--CATTGAACGAATCCGGT-----A-ATGCAGAATTGCCTTGGGA---ATGTTCCGCCATA-CGC---ACACTGAA-G-A--CGACGCAGAGGGTC--------C-------A---------GGG---TT---GG-CT-CTTGACGTAA--ATATCGCTCCATATTAT-CCAAA--C-AT---TTTC-TATA---GA
gi|9 : T---ATCCATTATCGTTTATACGAATAGCCACTAAAAATAAGGGG---GT-GCCAAA--A--GTT-CA-----TTGATAGCTTGTGTGACCG-CCTGAT-GGCTTGTGTGACCGCCATTTGCACCGATGCATTCTTCACACAAAAGACTCATTGAACGAATCCGGT-----A-ATGCAGAATTGCCTTGGGA---ATGTTCCGCCATA-CGC---ACACTGAA-GAA--CGACGCAGAGTGGC--------C-------A---------GGG---TT---GG-CT-CTTGACGTAA--ATATCGCTCCATATTATCCC-AA--C-AT---TTTC-TAT
Alignments
lowQualScore : 44444444444444 11111111 11111 22222222 11 11111 444444444444 33 1111111 33333333333333333333333333 1
lowQualScore : 3 0 1 77777777777777 9999 6666 1 55555555 2 1 11111 7 66 55555555 0 777 0 1 7 777 4 4 66 00 11111 0 0 555555555555 4 1 6 5555 22 1 4444444 5 33 666 3 666 1 0 666 55 1 1 66666666666666666666666666 999 555 3 3 44 0 1 2 55 3 7777 3 777
lowQualScore : . . . .............. .... .... . ........ . . ..... . .. ........ . ... . . . ... . . .. .. ..... . . ............ . . . .... .. . ....... . .. ... . ... . . ... .. . . .......................... ... ... . . .. . . . .. . .... . ...
lowQualScore : 0 8 0 44444444444444 4444 6666 1 66666666 3 0 11111 3 99 55555555 5 888 1 9 4 888 4 4 11 66 11111 8 8 111111111111 4 7 7 9999 22 0 5555555 8 11 444 6 444 4 4 333 00 8 2 00000000000000000000000000 222 888 3 3 66 8 0 7 00 6 7777 6 000
consensus : TANATTCATATACAAAATATNATGTTGCATTATGG---------TAGTAT----CATTATTTGATACAAATTCAT------ACAATACNTT-----TCAATTC--A---A---TCAAGTCACGGAATTT---ATCCATTATCGTTTATACGAATAGCCACTAAAAATAAGGGG---GT-GC-AAA--A--GTTTCA-----TTGATAGCTTGTGTGA-C-G-CCTGAT-G-CTTGTGTGACCGCCATTTGCACCGATGCATTCTTCACACANAAGAC-CATTGAACGAATCNGGT-----A-ATGCAGAANTGCCTTGGGA---ATGTTCCGCCATA-CGC---ACACTGAA-GAA--CGACGCAGAGCGTC--------C-------A---------GGG---TT---GG-CT-CTTGACGTAG--ACGTCGCTCCATNTTATCCCAAA--C-AT---GTTC-TATA---GACGATAAATCCG
Reference ( family-6866 ) : TATATTCATGTACAAAATATNATGTTGCATTATGG---------TAGTAT----CATTATTTGATACAAATTCAT------ACAATACNTT-----TCAATTC--A---A---TCAAGTCACGGAATTT---ATCCATTATCGTTTATACGAATAGCCACTAAAAATAAGGGG---GT-GC-AAA--A--GTTTCA-----TTGATAGCTTGTGTGA-C-G-CCTGAT-G-CTTGTGTGACCGCCATTTGCACCGATGCATTCTTCACACANAAGAC-CATTGAACGAATCNGGT-----A-ATGCAGAANTGCCTTGGGA---ATGTTCCGCCATA-CGC---ACACTGAA-GAA--CGACGCAGAGCGTC--------C-------A---------GGG---TT---GG-CT-CTTGACGTAG--ACGTCGCTCCATNTTATCCCAAA--C-AT---GTTC-TATA---GACGATAAATCCG
gi|1 : -CTTGACGTAG--ACGTCGTTCCATTTTATCCCAAA--C-AC---GTTC-TATATAGGAGGA-AAATTC
gi|10 : TATATTCATGTATAAAA-ATTATGTTGCATTGTGG-----------GTAT----CAATATTCAATA-----TGAT------GCATTGTCTT-----TCAATTC--AAACA---TAAAATTGTAGAGTAT---GTCCCTTACGGCTGATATGAATACCCACTGACA-----------GT-TT-GAA--A--G----A-------AATAGGCTGTATGA-----------------------CCGCATTTTGCATAGGTGCAGTCCTCACACGTACAATGCATTTAACAAATCAGGaggccatggtagcacattcacgttttgtgcggcggtgtgttgttatgctgcagaatgacgtaacgttggttgttgtgaatgaatggaatgacgtgctggcgtacaatatcgtcacgatagcatatgccggttaaaatgctctccactttcaccatatgttgtaaatccagaccagaccatgtaacgctccctccgctgaattggcggcgctgaaatgcgcatacgttaatgtagcgttctccgacacgacggtaagctcgggcacgaccgtgacgtcactgctgtcgtgatgaaatatccactcatccggaaatagaacttccgttgttgaaacggtaatggttcctacaccacgcaaacttcccaacacggtgatgtcagagcagaacagggctggccatcaaaaagaatcgaacgcgatatttaacaaatg
gi|11 : tactagcggagagaaaaaaagagtatagtttagtagttttatctaTCACGGATTGT---GTCTATTATGGTTGATACGAACAGCCACTGAAAAAAAGAGG---GC-CC-TAACCA--GTTTCACAAGTTTAACAGC--GTGT-A-C-A-------------GTATGACTGCAATTTGCACTAATGCATTCCGCACACCTACAACACATTGAAGAAACCAAAT-----T-ATGCAG----------------ATGTTTCGCCATA-TGT---GC----AA-GAA--CAAAGCAAAACCAC--------C-------A------------------------------ATGCAGCAAGG-------ATTTT----CAAA--C-AT---GTTC-TACA---GACGATAAATCCG
gi|12 : agaATTCTTCACATCTACGATGCATTCATGGAATCAGAT-----T-ATGCAGAAATGCCTGGAGA---ATGTTCTGCCATA-TGC---ATAGTAAA-GAA--CGCCGCA-ACCCCC--------CCCCCA--A---------CCG---TT---GGCCT-CTTGACGAAG--ACGT---TCCATTTCAAGCCAAATGT-AT---GTTC-TATA---GGCAATACATCgtga
gi|13 : gtttcacaactttgaaagcaagtactagtattatcgcaaggATTGAACAAATCGGGTTAATAATATGCAGAAATGCCCGAGGA---ATGTTTAGCTATG-TGC---GCAATAAAAGAA--CGATGAAAAGCATCAAACGTAGC-------A---------AGGGGTTT---GG-CT-CTTGACATAG--ACATCATTCTATTTCAT-CCAAA--CAAT---GTTC-TATA---GGCGATAAATC
gi|14 : tGCACAAAATAAAATGTTGCATTAT-G---------TA-TAT----CATTATTTAATAT-AATGCATTGTCTGAC----TCTT-----TCAATTC--A---A---
gi|15 : actagcgggggaaaagaagctgtgtcgtttagtaattttaaaATTCATATACCAAATGCAATGTTGTATAATG----------TA-TAT----CATTATTTGATATAa
gi|16 : gtgtagtttagtaattttatttacagTAGATTCATATACAAAATATCATGTTGCATTAT-G---------TA-TAT----CATTATTTAATG-----TGAT------ACATTGTCTT-----TCAATttagattgtctttcgatcgcataattatgcaaagt
gi|17 : taccggaaaaaagaaactagttttaTCAGGT-----A-ATGCAGAAATGCCTGGGAA---GTGTTCGGTTATATTGC---TCAATAAA-AAAAGCTACGCAAAGCATC--------C-------A---------ACG---TA---GG-ca
gi|2 : caacTTAAT------ATAATACTTTGTTTTTCAATTCCAAC--A---TCAAATCATGGATAAT---GTTCATTATTCTTGATACAAACAGCTATTAAAAA-AGGGGGAAGGG-GC-AAA--AAAGTTTC-------TCA-AGTTT---TA---------GATAG-CGTGTATTGCTGCCATTCACACCGATGCAATCTCCGCAC------C-TAC------AATCAGGTT----A-ATAT-GAA--------GAA---AC---CCGTTATA-TGC---ACAATAGA-CAA--CGATACTAAGTGAC--------C-------AACGTAGAAGGGG---TTTTTGG-CT-CTTGACGTAG--ACGTTGTTCCATTTCATCCCAAA--C-ATCAAGTTT-TATA---GACAATAAACCggggca
gi|3 : tatATATTCAAAATGTTATTTTGCATTTTAGCATACTAGCTAGTAT----CATTATTTGATACAAATTCAT------ACAATACATT-----TCAATTC--A---A---TCAAGTCACGGAATTT---ATCCATTATCGTTTATACGAATAGCCACTAAAAATAAGGGG---GT-GC-AAA--A--GTTTCA-----TTGATAGCTTGTGTGACC-G-CCTGATGG-CTTGTGTGACCGCCATTTGCACCGATGCATTCTTCACACAAAAGACTCATTGAACGAATCCGGT-----A-ATGCAGAATTGCCTTGGGA---ATGTTCCGCCATA-CGC---ACACTGAA-GAA--CGACGCAGAGTGTC--------C-------A---------GGG---TT---GG-CT-CTTGACGTAA--ATATCGCTCCATATTATCCCAAA--C-AT---TTTC-TATA---GACGTTAAATCCGacgtgacattgaaggtcagatagtcactataaacacgtgcggtgtgaagtcgtgcgttttcctgctgcagaacgacgttacactggttgttgtgaatgaatggaatgacgtgccgacatacaatatctcatcaccgtagtgtatgccggttaa
gi|4 : t---TT---AG-CCACTTGACGTAA--ACGTCATTCCATTTAACCCCAAA--C-AT---GTCC-TACA---GGCGATAAATC
gi|5 : aaagaaacaagtaacagattatgtccaataaagaaggacaaaaagctaccaacgtagcagtgagt----CATTATTTGATACAAATTCAT------A-AATACATT-----TCA-TTC--A---A----CAAGTCACGGAATTT---ATCCATTATCGTTTATACGAATAGCCACTAAAAATAAGGGG---GT-GC-AAA--A--GTTTCA-----TTGATAGCTTGTGTGA-C-GCCCTGA--G-CTTGTGTGA-CGCCATTTGCACCGATGCATTCTTCACACAAAAGA--CATTGAACGAATCCGGT-----A-ATGCAGAATTGCCTTGGGA---ATGTTCCGCCATA-CGC---ACACTGAA-G-A--CGACGCAGAGGGTC--------C-------A---------GGG---TT---GG-CT-CTTGACGTAA--ATATCGCTCCATATTAT-CCAAA--C-AT---TTTCTTATA---GAttgtgatattgcaagccaaggtagcaaaaacacgttctcctgcggtaggcgcgttcaacaaacggcctatgcagtgttctgtttcatgcttgcctgcactgaagaatgacgttacactggtctgttgtgaatgaatggaatgaagtgttgatctcgtcacgatagcatacgccggttaaattggcctccactatgatcaaacgtt
gi|6 : G---------TAGTATGTCGCATTATTTAATACAA-----T------GCATTGTCTT-----CCTATTC--A---AACATCAAATCAC---ATTTTATATCCATTATGGTTAGAACAAACAGATACTGAGAA-ACGGGG---GTTGC-AAA--AC-GTTTCA-----T-------------GA---G-TTTAATAG-CGTGTATGACCACCATTGGCACCGATGCACTCTTCACCTAC--GACGCATTGAACGAACCAGGT-----T-ATGCAGAAATGTC-TGGGAAATATATTCCGTCATA-TGCGTGACACACAA--AA--CGACGCAAAGCGTCAAA-----CGTAGCGGA---------GGGT--TT---AT-CT-CTTGATGCAG--ACGTCGTTCCAT
gi|7 : aaccgt----CATTATTTGATACAAATTCAT------A-AATACATT-----TCA-TTC--A---A----CAAGTCACGGAATTT---ATCCATTATCGTTTATACGAATAGCCACTAAAAATAAGGGG---GT-GC-AAA--A--GTTTCA-----TTGATAGCTTGTGTGA-C-GCCCTGA--G-CTTGTGTGA-CGCCATTTGCACCGATGCATTCTTCACACAAAAGA--CATTGAACGAATCCGGT-----A-ATGCAGAATTGCCTTGGGA---ATGTTCCGCCATA-CGC---ACACTGAA-G-A--CGACGCAGAGGGTC--------C-------A---------GGG---TT---GG-CT-CTTGACGTAA--ATATCGCTCCATATTAT-CCAAA--C-AT---TTTC-TATA---GA
gi|8 : ----CATTATTTGATACAAATTCAT------A-AATACATT-----TCA-TTC--A---A----CAAGTCACGGAATTT---ATCCATTATCGTTTATACGAATAGCCACTAAAAATAAGGGG---GT-GC-AAA--A--GTTTCA-----TTGATAGCTTGTGTGA-C-GCCCTGA--G-CTTGTGTGA-CGCCATTTGCACCGATGCATTCTTCACACAAAAGA--CATTGAACGAATCCGGT-----A-ATGCAGAATTGCCTTGGGA---ATGTTCCGCCATA-CGC---ACACTGAA-G-A--CGACGCAGAGGGTC--------C-------A---------GGG---TT---GG-CT-CTTGACGTAA--ATATCGCTCCATATTAT-CCAAA--C-AT---TTTC-TATA---GA
gi|9 : T---ATCCATTATCGTTTATACGAATAGCCACTAAAAATAAGGGG---GT-GCCAAA--A--GTT-CA-----TTGATAGCTTGTGTGA-CCG-CCTGAT-GGCTTGTGTGACCGCCATTTGCACCGATGCATTCTTCACACAAAAGACTCATTGAACGAATCCGGT-----A-ATGCAGAATTGCCTTGGGA---ATGTTCCGCCATA-CGC---ACACTGAA-GAA--CGACGCAGAGTGGC--------C-------A---------GGG---TT---GG-CT-CTTGACGTAA--ATATCGCTCCATATTATCCC-AA--C-AT---TTTC-TAT
Alignments
lowQualScore : 44444444444444 11111111 11111 22222222 11 11111 4444444444444 33 1111111 33333333333333333333333333 1
lowQualScore : 1 0 1 99999999999999 9999 6666 1 55555555 2 1 11111 7 66 55555555 0 777 0 1 7 777 4 4 66 00 11111 0 0 5555555555555 1 6 5555 22 1 4444444 5 33 666 3 666 1 0 666 55 1 1 66666666666666666666666666 999 555 3 3 44 0 1 2 55 3 7777 3 777
lowQualScore : . . . .............. .... .... . ........ . . ..... . .. ........ . ... . . . ... . . .. .. ..... . . ............. . . .... .. . ....... . .. ... . ... . . ... .. . . .......................... ... ... . . .. . . . .. . .... . ...
lowQualScore : 0 8 0 00000000000000 4444 6666 1 66666666 3 0 11111 3 99 55555555 5 888 1 9 4 888 4 4 11 66 11111 8 8 1111111111111 7 7 9999 22 0 5555555 8 11 444 6 444 4 4 333 00 8 2 00000000000000000000000000 222 888 3 3 66 8 0 7 00 6 7777 6 000
consensus : TAGATTCATATACAAAATATNATGTTGCATTAT-G---------TAGTAT----CATTATTTGATACAAATTCAT------ACAATACNTT-----TCAATTC--A---A---TCAAGTCACGGAATTT---ATCCATTATCGTTTATACGAATAGCCACTAAAAATAAGGGG---GT-GC-AAA--A--GTTTCA-----TTGATAGCTTGTGTGAC-G-CCTGAT-G-CTTGTGTGACCGCCATTTGCACCGATGCATTCTTCACACANAAGAC-CATTGAACGAATCNGGT-----A-ATGCAGAANTGCCTTGGGA---ATGTTCCGCCATA-CGC---ACACTGAA-GAA--CGACGCAGAGCGTC--------C-------A---------GGG---TT---GG-CT-CTTGACGTAG--ACGTCGCTCCATNTTATCCCAAA--C-AT---GTTC-TATA---GACGATAAATCCG
Reference ( family-6866 ) : TANATTCATATACAAAATATNATGTTGCATTATGG---------TAGTAT----CATTATTTGATACAAATTCAT------ACAATACNTT-----TCAATTC--A---A---TCAAGTCACGGAATTT---ATCCATTATCGTTTATACGAATAGCCACTAAAAATAAGGGG---GT-GC-AAA--A--GTTTCA-----TTGATAGCTTGTGTGAC-G-CCTGAT-G-CTTGTGTGACCGCCATTTGCACCGATGCATTCTTCACACANAAGAC-CATTGAACGAATCNGGT-----A-ATGCAGAANTGCCTTGGGA---ATGTTCCGCCATA-CGC---ACACTGAA-GAA--CGACGCAGAGCGTC--------C-------A---------GGG---TT---GG-CT-CTTGACGTAG--ACGTCGCTCCATNTTATCCCAAA--C-AT---GTTC-TATA---GACGATAAATCCG
gi|1 : -CTTGACGTAG--ACGTCGTTCCATTTTATCCCAAA--C-AC---GTTC-TATATAGGAGGA-AAATTC
gi|10 : TATATTCATGTATAAAA-ATTATGTTGCATTGTGG-----------GTAT----CAATATTCAATA-----TGAT------GCATTGTCTT-----TCAATTC--AAACA---TAAAATTGTAGAGTAT---GTCCCTTACGGCTGATATGAATACCCACTGACA-----------GT-TT-GAA--A--G----A-------AATAGGCTGTATGA----------------------CCGCATTTTGCATAGGTGCAGTCCTCACACGTACAATGCATTTAACAAATCAGGaggccatggtagcacattcacgttttgtgcggcggtgtgttgttatgctgcagaatgacgtaacgttggttgttgtgaatgaatggaatgacgtgctggcgtacaatatcgtcacgatagcatatgccggttaaaatgctctccactttcaccatatgttgtaaatccagaccagaccatgtaacgctccctccgctgaattggcggcgctgaaatgcgcatacgttaatgtagcgttctccgacacgacggtaagctcgggcacgaccgtgacgtcactgctgtcgtgatgaaatatccactcatccggaaatagaacttccgttgttgaaacggtaatggttcctacaccacgcaaacttcccaacacggtgatgtcagagcagaacagggctggccatcaaaaagaatcgaacgcgatatttaacaaatg
gi|11 : tactagcggagagaaaaaaagagtatagtttagtagttttatctaTCACGGATTGT---GTCTATTATGGTTGATACGAACAGCCACTGAAAAAAAGAGG---GC-CC-TAACCA--GTTTCACAAGTTTAACAGC--GTGT-AC-A-------------GTATGACTGCAATTTGCACTAATGCATTCCGCACACCTACAACACATTGAAGAAACCAAAT-----T-ATGCAG----------------ATGTTTCGCCATA-TGT---GC----AA-GAA--CAAAGCAAAACCAC--------C-------A------------------------------ATGCAGCAAGG-------ATTTT----CAAA--C-AT---GTTC-TACA---GACGATAAATCCG
gi|12 : agaATTCTTCACATCTACGATGCATTCATGGAATCAGAT-----T-ATGCAGAAATGCCTGGAGA---ATGTTCTGCCATA-TGC---ATAGTAAA-GAA--CGCCGCA-ACCCCC--------CCCCCA--A---------CCG---TT---GGCCT-CTTGACGAAG--ACGT---TCCATTTCAAGCCAAATGT-AT---GTTC-TATA---GGCAATACATCgtga
gi|13 : gtttcacaactttgaaagcaagtactagtattatcgcaaggATTGAACAAATCGGGTTAATAATATGCAGAAATGCCCGAGGA---ATGTTTAGCTATG-TGC---GCAATAAAAGAA--CGATGAAAAGCATCAAACGTAGC-------A---------AGGGGTTT---GG-CT-CTTGACATAG--ACATCATTCTATTTCAT-CCAAA--CAAT---GTTC-TATA---GGCGATAAATC
gi|14 : tACAAAATAAAATGTTGCATTAT-G---------TA-TAT----CATTATTTAATAT-AATGCATTGTCTGAC----TCTT-----TCAATTC--A---A---
gi|15 : actagcgggggaaaagaagctgtgtcgtttagtaattttaaagcAGATTCATATACCAAATGCAATGTTGTATAAT-G---------TA-TAT----CATTATTTGATATAa
gi|16 : gtgtagtttagtaattttatttacTAGATTCATATACAAAATATCATGTTGCATTAT-G---------TA-TAT----CATTATTTAATG-----TGAT------ACATTGTCTT-----TCAATttagattgtctttcgatcgcataattatgcaaagt
gi|17 : taccggaaaaaagaaactagttttaTCAGGT-----A-ATGCAGAAATGCCTGGGAA---GTGTTCGGTTATATTGC---TCAATAAA-AAAAGCTACGCAAAGCATC--------C-------A---------ACG---TA---GG-ca
gi|2 : caacTTAAT------ATAATACTTTGTTTTTCAATTCCAAC--A---TCAAATCATGGATAAT---GTTCATTATTCTTGATACAAACAGCTATTAAAAA-AGGGGGAAGGG-GC-AAA--AAAGTTTC-------TCA-AGTTT---TA--------GATAG-CGTGTATTGCTGCCATTCACACCGATGCAATCTCCGCAC------C-TAC------AATCAGGTT----A-ATAT-GAA--------GAA---AC---CCGTTATA-TGC---ACAATAGA-CAA--CGATACTAAGTGAC--------C-------AACGTAGAAGGGG---TTTTTGG-CT-CTTGACGTAG--ACGTTGTTCCATTTCATCCCAAA--C-ATCAAGTTT-TATA---GACAATAAACCggggca
gi|3 : tatATATTCAAAATGTTATTTTGCATTTTAGCATACTAGCTAGTAT----CATTATTTGATACAAATTCAT------ACAATACATT-----TCAATTC--A---A---TCAAGTCACGGAATTT---ATCCATTATCGTTTATACGAATAGCCACTAAAAATAAGGGG---GT-GC-AAA--A--GTTTCA-----TTGATAGCTTGTGTGACCG-CCTGAT-GGCTTGTGTGACCGCCATTTGCACCGATGCATTCTTCACACAAAAGACTCATTGAACGAATCCGGT-----A-ATGCAGAATTGCCTTGGGA---ATGTTCCGCCATA-CGC---ACACTGAA-GAA--CGACGCAGAGTGTC--------C-------A---------GGG---TT---GG-CT-CTTGACGTAA--ATATCGCTCCATATTATCCCAAA--C-AT---TTTC-TATA---GACGTTAAATCCGacgtgacattgaaggtcagatagtcactataaacacgtgcggtgtgaagtcgtgcgttttcctgctgcagaacgacgttacactggttgttgtgaatgaatggaatgacgtgccgacatacaatatctcatcaccgtagtgtatgccggttaa
gi|4 : t---TT---AG-CCACTTGACGTAA--ACGTCATTCCATTTAACCCCAAA--C-AT---GTCC-TACA---GGCGATAAATC
gi|5 : aaagaaacaagtaacagattatgtccaataaagaaggacaaaaagctaccaacgtagcagtgagt----CATTATTTGATACAAATTCAT------A-AATACATT-----TCA-TTC--A---A----CAAGTCACGGAATTT---ATCCATTATCGTTTATACGAATAGCCACTAAAAATAAGGGG---GT-GC-AAA--A--GTTTCA-----TTGATAGCTTGTGTGAC-GCCCTGA--G-CTTGTGTGA-CGCCATTTGCACCGATGCATTCTTCACACAAAAGA--CATTGAACGAATCCGGT-----A-ATGCAGAATTGCCTTGGGA---ATGTTCCGCCATA-CGC---ACACTGAA-G-A--CGACGCAGAGGGTC--------C-------A---------GGG---TT---GG-CT-CTTGACGTAA--ATATCGCTCCATATTAT-CCAAA--C-AT---TTTCTTATA---GAttgtgatattgcaagccaaggtagcaaaaacacgttctcctgcggtaggcgcgttcaacaaacggcctatgcagtgttctgtttcatgcttgcctgcactgaagaatgacgttacactggtctgttgtgaatgaatggaatgaagtgttgatctcgtcacgatagcatacgccggttaaattggcctccactatgatcaaacgtt
gi|6 : G---------TAGTATGTCGCATTATTTAATACAA-----T------GCATTGTCTT-----CCTATTC--A---AACATCAAATCAC---ATTTTATATCCATTATGGTTAGAACAAACAGATACTGAGAA-ACGGGG---GTTGC-AAA--AC-GTTTCA-----T-------------GA--G-TTTAATAG-CGTGTATGACCACCATTGGCACCGATGCACTCTTCACCTAC--GACGCATTGAACGAACCAGGT-----T-ATGCAGAAATGTC-TGGGAAATATATTCCGTCATA-TGCGTGACACACAA--AA--CGACGCAAAGCGTCAAA-----CGTAGCGGA---------GGGT--TT---AT-CT-CTTGATGCAG--ACGTCGTTCCAT
gi|7 : aaccgt----CATTATTTGATACAAATTCAT------A-AATACATT-----TCA-TTC--A---A----CAAGTCACGGAATTT---ATCCATTATCGTTTATACGAATAGCCACTAAAAATAAGGGG---GT-GC-AAA--A--GTTTCA-----TTGATAGCTTGTGTGAC-GCCCTGA--G-CTTGTGTGA-CGCCATTTGCACCGATGCATTCTTCACACAAAAGA--CATTGAACGAATCCGGT-----A-ATGCAGAATTGCCTTGGGA---ATGTTCCGCCATA-CGC---ACACTGAA-G-A--CGACGCAGAGGGTC--------C-------A---------GGG---TT---GG-CT-CTTGACGTAA--ATATCGCTCCATATTAT-CCAAA--C-AT---TTTC-TATA---GA
gi|8 : ----CATTATTTGATACAAATTCAT------A-AATACATT-----TCA-TTC--A---A----CAAGTCACGGAATTT---ATCCATTATCGTTTATACGAATAGCCACTAAAAATAAGGGG---GT-GC-AAA--A--GTTTCA-----TTGATAGCTTGTGTGAC-GCCCTGA--G-CTTGTGTGA-CGCCATTTGCACCGATGCATTCTTCACACAAAAGA--CATTGAACGAATCCGGT-----A-ATGCAGAATTGCCTTGGGA---ATGTTCCGCCATA-CGC---ACACTGAA-G-A--CGACGCAGAGGGTC--------C-------A---------GGG---TT---GG-CT-CTTGACGTAA--ATATCGCTCCATATTAT-CCAAA--C-AT---TTTC-TATA---GA
gi|9 : T---ATCCATTATCGTTTATACGAATAGCCACTAAAAATAAGGGG---GT-GCCAAA--A--GTT-CA-----TTGATAGCTTGTGTGACCG-CCTGAT-GGCTTGTGTGACCGCCATTTGCACCGATGCATTCTTCACACAAAAGACTCATTGAACGAATCCGGT-----A-ATGCAGAATTGCCTTGGGA---ATGTTCCGCCATA-CGC---ACACTGAA-GAA--CGACGCAGAGTGGC--------C-------A---------GGG---TT---GG-CT-CTTGACGTAA--ATATCGCTCCATATTATCCC-AA--C-AT---TTTC-TAT
Alignments
lowQualScore : 22222 22222222 11111111 11111 22222222 11 11111 4444444444444 33 1111111 33333333333333333333333333 1
lowQualScore : 0 1 00000 44444444 9999 6666 1 55555555 2 1 11111 7 66 55555555 0 777 0 1 7 777 4 4 66 00 11111 0 0 5555555555555 1 6 5555 22 1 4444444 5 33 666 3 666 1 0 666 55 1 1 66666666666666666666666666 999 555 3 3 44 0 1 2 55 3 7777 3 777
lowQualScore : . . ..... ........ .... .... . ........ . . ..... . .. ........ . ... . . . ... . . .. .. ..... . . ............. . . .... .. . ....... . .. ... . ... . . ... .. . . .......................... ... ... . . .. . . . .. . .... . ...
lowQualScore : 8 0 00000 33333333 4444 6666 1 66666666 3 0 11111 3 99 55555555 5 888 1 9 4 888 4 4 11 66 11111 8 8 1111111111111 7 7 9999 22 0 5555555 8 11 444 6 444 4 4 333 00 8 2 00000000000000000000000000 222 888 3 3 66 8 0 7 00 6 7777 6 000
consensus : TAGATTCATATACAAAATATNATGTTGCATT-----ATG-----TAGTAT----CATTATTTGATACAAATTCAT------ACAATACNTT-----TCAATTC--A---A---TCAAGTCACGGAATTT---ATCCATTATCGTTTATACGAATAGCCACTAAAAATAAGGGG---GT-GC-AAA--A--GTTTCA-----TTGATAGCTTGTGTGAC-G-CCTGAT-G-CTTGTGTGACCGCCATTTGCACCGATGCATTCTTCACACANAAGAC-CATTGAACGAATCNGGT-----A-ATGCAGAANTGCCTTGGGA---ATGTTCCGCCATA-CGC---ACACTGAA-GAA--CGACGCAGAGCGTC--------C-------A---------GGG---TT---GG-CT-CTTGACGTAG--ACGTCGCTCCATNTTATCCCAAA--C-AT---GTTC-TATA---GACGATAAATCCG
Reference ( family-6866 ) : TAGATTCATATACAAAATATNATGTTGCATT-----ATG-----TAGTAT----CATTATTTGATACAAATTCAT------ACAATACNTT-----TCAATTC--A---A---TCAAGTCACGGAATTT---ATCCATTATCGTTTATACGAATAGCCACTAAAAATAAGGGG---GT-GC-AAA--A--GTTTCA-----TTGATAGCTTGTGTGAC-G-CCTGAT-G-CTTGTGTGACCGCCATTTGCACCGATGCATTCTTCACACANAAGAC-CATTGAACGAATCNGGT-----A-ATGCAGAANTGCCTTGGGA---ATGTTCCGCCATA-CGC---ACACTGAA-GAA--CGACGCAGAGCGTC--------C-------A---------GGG---TT---GG-CT-CTTGACGTAG--ACGTCGCTCCATNTTATCCCAAA--C-AT---GTTC-TATA---GACGATAAATCCG
gi|1 : -CTTGACGTAG--ACGTCGTTCCATTTTATCCCAAA--C-AC---GTTC-TATATAGGAGGA-AAATTC
gi|10 : TATATTCATGTATAAAA-ATTATGTTGCATT-----GTG------GGTAT----CAATATTCAATA-----TGAT------GCATTGTCTT-----TCAATTC--AAACA---TAAAATTGTAGAGTAT---GTCCCTTACGGCTGATATGAATACCCACTGACA-----------GT-TT-GAA--A--G----A-------AATAGGCTGTATGA----------------------CCGCATTTTGCATAGGTGCAGTCCTCACACGTACAATGCATTTAACAAATCAGGaggccatggtagcacattcacgttttgtgcggcggtgtgttgttatgctgcagaatgacgtaacgttggttgttgtgaatgaatggaatgacgtgctggcgtacaatatcgtcacgatagcatatgccggttaaaatgctctccactttcaccatatgttgtaaatccagaccagaccatgtaacgctccctccgctgaattggcggcgctgaaatgcgcatacgttaatgtagcgttctccgacacgacggtaagctcgggcacgaccgtgacgtcactgctgtcgtgatgaaatatccactcatccggaaatagaacttccgttgttgaaacggtaatggttcctacaccacgcaaacttcccaacacggtgatgtcagagcagaacagggctggccatcaaaaagaatcgaacgcgatatttaacaaatg
gi|11 : tactagcggagagaaaaaaagagtatagtttagtagttttatctaTCACGGATTGT---GTCTATTATGGTTGATACGAACAGCCACTGAAAAAAAGAGG---GC-CC-TAACCA--GTTTCACAAGTTTAACAGC--GTGT-AC-A-------------GTATGACTGCAATTTGCACTAATGCATTCCGCACACCTACAACACATTGAAGAAACCAAAT-----T-ATGCAG----------------ATGTTTCGCCATA-TGT---GC----AA-GAA--CAAAGCAAAACCAC--------C-------A------------------------------ATGCAGCAAGG-------ATTTT----CAAA--C-AT---GTTC-TACA---GACGATAAATCCG
gi|12 : agaATTCTTCACATCTACGATGCATTCATGGAATCAGAT-----T-ATGCAGAAATGCCTGGAGA---ATGTTCTGCCATA-TGC---ATAGTAAA-GAA--CGCCGCA-ACCCCC--------CCCCCA--A---------CCG---TT---GGCCT-CTTGACGAAG--ACGT---TCCATTTCAAGCCAAATGT-AT---GTTC-TATA---GGCAATACATCgtga
gi|13 : gtttcacaactttgaaagcaagtactagtattatcgcaaggATTGAACAAATCGGGTTAATAATATGCAGAAATGCCCGAGGA---ATGTTTAGCTATG-TGC---GCAATAAAAGAA--CGATGAAAAGCATCAAACGTAGC-------A---------AGGGGTTT---GG-CT-CTTGACATAG--ACATCATTCTATTTCAT-CCAAA--CAAT---GTTC-TATA---GGCGATAAATC
gi|14 : tACAAAATAAAATGTTGCATT-----ATG-----TA-TAT----CATTATTTAATAT-AATGCATTGTCTGAC----TCTT-----TCAATTC--A---A---
gi|15 : actagcgggggaaaagaagctgtgtcgtttagtaattttaaagcAGATTCATATACCAAATGCAATGTTGTATA-----ATG-----TA-TAT----CATTATTTGATATAa
gi|16 : gtgtagtttagtaattttatttacTAGATTCATATACAAAATATCATGTTGCATT-----ATG-----TA-TAT----CATTATTTAATG-----TGAT------ACATTGTCTT-----TCAATttagattgtctttcgatcgcataattatgcaaagt
gi|17 : taccggaaaaaagaaactagttttaTCAGGT-----A-ATGCAGAAATGCCTGGGAA---GTGTTCGGTTATATTGC---TCAATAAA-AAAAGCTACGCAAAGCATC--------C-------A---------ACG---TA---GG-ca
gi|2 : caacTTAAT------ATAATACTTTGTTTTTCAATTCCAAC--A---TCAAATCATGGATAAT---GTTCATTATTCTTGATACAAACAGCTATTAAAAA-AGGGGGAAGGG-GC-AAA--AAAGTTTC-------TCA-AGTTT---TA--------GATAG-CGTGTATTGCTGCCATTCACACCGATGCAATCTCCGCAC------C-TAC------AATCAGGTT----A-ATAT-GAA--------GAA---AC---CCGTTATA-TGC---ACAATAGA-CAA--CGATACTAAGTGAC--------C-------AACGTAGAAGGGG---TTTTTGG-CT-CTTGACGTAG--ACGTTGTTCCATTTCATCCCAAA--C-ATCAAGTTT-TATA---GACAATAAACCggggca
gi|3 : tatATATTCAAAATGTTATTTTGCATTTTAGCATACTAGCTAGTAT----CATTATTTGATACAAATTCAT------ACAATACATT-----TCAATTC--A---A---TCAAGTCACGGAATTT---ATCCATTATCGTTTATACGAATAGCCACTAAAAATAAGGGG---GT-GC-AAA--A--GTTTCA-----TTGATAGCTTGTGTGACCG-CCTGAT-GGCTTGTGTGACCGCCATTTGCACCGATGCATTCTTCACACAAAAGACTCATTGAACGAATCCGGT-----A-ATGCAGAATTGCCTTGGGA---ATGTTCCGCCATA-CGC---ACACTGAA-GAA--CGACGCAGAGTGTC--------C-------A---------GGG---TT---GG-CT-CTTGACGTAA--ATATCGCTCCATATTATCCCAAA--C-AT---TTTC-TATA---GACGTTAAATCCGacgtgacattgaaggtcagatagtcactataaacacgtgcggtgtgaagtcgtgcgttttcctgctgcagaacgacgttacactggttgttgtgaatgaatggaatgacgtgccgacatacaatatctcatcaccgtagtgtatgccggttaa
gi|4 : t---TT---AG-CCACTTGACGTAA--ACGTCATTCCATTTAACCCCAAA--C-AT---GTCC-TACA---GGCGATAAATC
gi|5 : aaagaaacaagtaacagattatgtccaataaagaaggacaaaaagctaccaacgtagcagtgagt----CATTATTTGATACAAATTCAT------A-AATACATT-----TCA-TTC--A---A----CAAGTCACGGAATTT---ATCCATTATCGTTTATACGAATAGCCACTAAAAATAAGGGG---GT-GC-AAA--A--GTTTCA-----TTGATAGCTTGTGTGAC-GCCCTGA--G-CTTGTGTGA-CGCCATTTGCACCGATGCATTCTTCACACAAAAGA--CATTGAACGAATCCGGT-----A-ATGCAGAATTGCCTTGGGA---ATGTTCCGCCATA-CGC---ACACTGAA-G-A--CGACGCAGAGGGTC--------C-------A---------GGG---TT---GG-CT-CTTGACGTAA--ATATCGCTCCATATTAT-CCAAA--C-AT---TTTCTTATA---GAttgtgatattgcaagccaaggtagcaaaaacacgttctcctgcggtaggcgcgttcaacaaacggcctatgcagtgttctgtttcatgcttgcctgcactgaagaatgacgttacactggtctgttgtgaatgaatggaatgaagtgttgatctcgtcacgatagcatacgccggttaaattggcctccactatgatcaaacgtt
gi|6 : TG-----TAGTATGTCGCATTATTTAATACAA-----T------GCATTGTCTT-----CCTATTC--A---AACATCAAATCAC---ATTTTATATCCATTATGGTTAGAACAAACAGATACTGAGAA-ACGGGG---GTTGC-AAA--AC-GTTTCA-----T-------------GA--G-TTTAATAG-CGTGTATGACCACCATTGGCACCGATGCACTCTTCACCTAC--GACGCATTGAACGAACCAGGT-----T-ATGCAGAAATGTC-TGGGAAATATATTCCGTCATA-TGCGTGACACACAA--AA--CGACGCAAAGCGTCAAA-----CGTAGCGGA---------GGGT--TT---AT-CT-CTTGATGCAG--ACGTCGTTCCAT
gi|7 : aaccg----CATTATTTGATACAAATTCAT------A-AATACATT-----TCA-TTC--A---A----CAAGTCACGGAATTT---ATCCATTATCGTTTATACGAATAGCCACTAAAAATAAGGGG---GT-GC-AAA--A--GTTTCA-----TTGATAGCTTGTGTGAC-GCCCTGA--G-CTTGTGTGA-CGCCATTTGCACCGATGCATTCTTCACACAAAAGA--CATTGAACGAATCCGGT-----A-ATGCAGAATTGCCTTGGGA---ATGTTCCGCCATA-CGC---ACACTGAA-G-A--CGACGCAGAGGGTC--------C-------A---------GGG---TT---GG-CT-CTTGACGTAA--ATATCGCTCCATATTAT-CCAAA--C-AT---TTTC-TATA---GA
gi|8 : ----CATTATTTGATACAAATTCAT------A-AATACATT-----TCA-TTC--A---A----CAAGTCACGGAATTT---ATCCATTATCGTTTATACGAATAGCCACTAAAAATAAGGGG---GT-GC-AAA--A--GTTTCA-----TTGATAGCTTGTGTGAC-GCCCTGA--G-CTTGTGTGA-CGCCATTTGCACCGATGCATTCTTCACACAAAAGA--CATTGAACGAATCCGGT-----A-ATGCAGAATTGCCTTGGGA---ATGTTCCGCCATA-CGC---ACACTGAA-G-A--CGACGCAGAGGGTC--------C-------A---------GGG---TT---GG-CT-CTTGACGTAA--ATATCGCTCCATATTAT-CCAAA--C-AT---TTTC-TATA---GA
gi|9 : T---ATCCATTATCGTTTATACGAATAGCCACTAAAAATAAGGGG---GT-GCCAAA--A--GTT-CA-----TTGATAGCTTGTGTGACCG-CCTGAT-GGCTTGTGTGACCGCCATTTGCACCGATGCATTCTTCACACAAAAGACTCATTGAACGAATCCGGT-----A-ATGCAGAATTGCCTTGGGA---ATGTTCCGCCATA-CGC---ACACTGAA-GAA--CGACGCAGAGTGGC--------C-------A---------GGG---TT---GG-CT-CTTGACGTAA--ATATCGCTCCATATTATCCC-AA--C-AT---TTTC-TAT
Alignments
lowQualScore : 22222 22222222 11111111 11111 22222222 11 11111 4444444444444 33 1111111 33333333333333333333333333 1
lowQualScore : 0 1 00000 44444444 9999 6666 1 55555555 2 1 11111 7 66 55555555 0 777 0 1 7 777 4 4 66 00 11111 0 0 5555555555555 1 6 5555 22 1 4444444 5 33 666 3 666 1 0 666 55 1 1 66666666666666666666666666 999 555 3 3 44 0 1 2 55 3 7777 3 777
lowQualScore : . . ..... ........ .... .... . ........ . . ..... . .. ........ . ... . . . ... . . .. .. ..... . . ............. . . .... .. . ....... . .. ... . ... . . ... .. . . .......................... ... ... . . .. . . . .. . .... . ...
lowQualScore : 8 0 00000 33333333 4444 6666 1 66666666 3 0 11111 3 99 55555555 5 888 1 9 4 888 4 4 11 66 11111 8 8 1111111111111 7 7 9999 22 0 5555555 8 11 444 6 444 4 4 333 00 8 2 00000000000000000000000000 222 888 3 3 66 8 0 7 00 6 7777 6 000
consensus : TAGATTCATATACAAAATATNATGTTGCATT-----ATG-----TAGTAT----CATTATTTGATACAAATTCAT------ACAATACNTT-----TCAATTC--A---A---TCAAGTCACGGAATTT---ATCCATTATCGTTTATACGAATAGCCACTAAAAATAAGGGG---GT-GC-AAA--A--GTTTCA-----TTGATAGCTTGTGTGAC-G-CCTGAT-G-CTTGTGTGACCGCCATTTGCACCGATGCATTCTTCACACANAAGAC-CATTGAACGAATCNGGT-----A-ATGCAGAANTGCCTTGGGA---ATGTTCCGCCATA-CGC---ACACTGAA-GAA--CGACGCAGAGCGTC--------C-------A---------GGG---TT---GG-CT-CTTGACGTAG--ACGTCGCTCCATNTTATCCCAAA--C-AT---GTTC-TATA---GACGATAAATCCG
Reference ( family-6866 ) : TAGATTCATATACAAAATATNATGTTGCATT-----ATG-----TAGTAT----CATTATTTGATACAAATTCAT------ACAATACNTT-----TCAATTC--A---A---TCAAGTCACGGAATTT---ATCCATTATCGTTTATACGAATAGCCACTAAAAATAAGGGG---GT-GC-AAA--A--GTTTCA-----TTGATAGCTTGTGTGAC-G-CCTGAT-G-CTTGTGTGACCGCCATTTGCACCGATGCATTCTTCACACANAAGAC-CATTGAACGAATCNGGT-----A-ATGCAGAANTGCCTTGGGA---ATGTTCCGCCATA-CGC---ACACTGAA-GAA--CGACGCAGAGCGTC--------C-------A---------GGG---TT---GG-CT-CTTGACGTAG--ACGTCGCTCCATNTTATCCCAAA--C-AT---GTTC-TATA---GACGATAAATCCG
gi|1 : -CTTGACGTAG--ACGTCGTTCCATTTTATCCCAAA--C-AC---GTTC-TATATAGGAGGA-AAATTC
gi|10 : TATATTCATGTATAAAA-ATTATGTTGCATT-----GTG------GGTAT----CAATATTCAATA-----TGAT------GCATTGTCTT-----TCAATTC--AAACA---TAAAATTGTAGAGTAT---GTCCCTTACGGCTGATATGAATACCCACTGACA-----------GT-TT-GAA--A--G----A-------AATAGGCTGTATGA----------------------CCGCATTTTGCATAGGTGCAGTCCTCACACGTACAATGCATTTAACAAATCAGGaggccatggtagcacattcacgttttgtgcggcggtgtgttgttatgctgcagaatgacgtaacgttggttgttgtgaatgaatggaatgacgtgctggcgtacaatatcgtcacgatagcatatgccggttaaaatgctctccactttcaccatatgttgtaaatccagaccagaccatgtaacgctccctccgctgaattggcggcgctgaaatgcgcatacgttaatgtagcgttctccgacacgacggtaagctcgggcacgaccgtgacgtcactgctgtcgtgatgaaatatccactcatccggaaatagaacttccgttgttgaaacggtaatggttcctacaccacgcaaacttcccaacacggtgatgtcagagcagaacagggctggccatcaaaaagaatcgaacgcgatatttaacaaatg
gi|11 : tactagcggagagaaaaaaagagtatagtttagtagttttatctaTCACGGATTGT---GTCTATTATGGTTGATACGAACAGCCACTGAAAAAAAGAGG---GC-CC-TAACCA--GTTTCACAAGTTTAACAGC--GTGT-AC-A-------------GTATGACTGCAATTTGCACTAATGCATTCCGCACACCTACAACACATTGAAGAAACCAAAT-----T-ATGCAG----------------ATGTTTCGCCATA-TGT---GC----AA-GAA--CAAAGCAAAACCAC--------C-------A------------------------------ATGCAGCAAGG-------ATTTT----CAAA--C-AT---GTTC-TACA---GACGATAAATCCG
gi|12 : agaATTCTTCACATCTACGATGCATTCATGGAATCAGAT-----T-ATGCAGAAATGCCTGGAGA---ATGTTCTGCCATA-TGC---ATAGTAAA-GAA--CGCCGCA-ACCCCC--------CCCCCA--A---------CCG---TT---GGCCT-CTTGACGAAG--ACGT---TCCATTTCAAGCCAAATGT-AT---GTTC-TATA---GGCAATACATCgtga
gi|13 : gtttcacaactttgaaagcaagtactagtattatcgcaaggATTGAACAAATCGGGTTAATAATATGCAGAAATGCCCGAGGA---ATGTTTAGCTATG-TGC---GCAATAAAAGAA--CGATGAAAAGCATCAAACGTAGC-------A---------AGGGGTTT---GG-CT-CTTGACATAG--ACATCATTCTATTTCAT-CCAAA--CAAT---GTTC-TATA---GGCGATAAATC
gi|14 : tACAAAATAAAATGTTGCATT-----ATG-----TA-TAT----CATTATTTAATAT-AATGCATTGTCTGAC----TCTT-----TCAATTC--A---A---
gi|15 : actagcgggggaaaagaagctgtgtcgtttagtaattttaaagcAGATTCATATACCAAATGCAATGTTGTATA-----ATG-----TA-TAT----CATTATTTGATATAa
gi|16 : gtgtagtttagtaattttatttacTAGATTCATATACAAAATATCATGTTGCATT-----ATG-----TA-TAT----CATTATTTAATG-----TGAT------ACATTGTCTT-----TCAATttagattgtctttcgatcgcataattatgcaaagt
gi|17 : taccggaaaaaagaaactagttttaTCAGGT-----A-ATGCAGAAATGCCTGGGAA---GTGTTCGGTTATATTGC---TCAATAAA-AAAAGCTACGCAAAGCATC--------C-------A---------ACG---TA---GG-ca
gi|2 : caacTTAAT------ATAATACTTTGTTTTTCAATTCCAAC--A---TCAAATCATGGATAAT---GTTCATTATTCTTGATACAAACAGCTATTAAAAA-AGGGGGAAGGG-GC-AAA--AAAGTTTC-------TCA-AGTTT---TA--------GATAG-CGTGTATTGCTGCCATTCACACCGATGCAATCTCCGCAC------C-TAC------AATCAGGTT----A-ATAT-GAA--------GAA---AC---CCGTTATA-TGC---ACAATAGA-CAA--CGATACTAAGTGAC--------C-------AACGTAGAAGGGG---TTTTTGG-CT-CTTGACGTAG--ACGTTGTTCCATTTCATCCCAAA--C-ATCAAGTTT-TATA---GACAATAAACCggggca
gi|3 : tatATATTCAAAATGTTATTTTGCATTTTAGCATACTAGCTAGTAT----CATTATTTGATACAAATTCAT------ACAATACATT-----TCAATTC--A---A---TCAAGTCACGGAATTT---ATCCATTATCGTTTATACGAATAGCCACTAAAAATAAGGGG---GT-GC-AAA--A--GTTTCA-----TTGATAGCTTGTGTGACCG-CCTGAT-GGCTTGTGTGACCGCCATTTGCACCGATGCATTCTTCACACAAAAGACTCATTGAACGAATCCGGT-----A-ATGCAGAATTGCCTTGGGA---ATGTTCCGCCATA-CGC---ACACTGAA-GAA--CGACGCAGAGTGTC--------C-------A---------GGG---TT---GG-CT-CTTGACGTAA--ATATCGCTCCATATTATCCCAAA--C-AT---TTTC-TATA---GACGTTAAATCCGacgtgacattgaaggtcagatagtcactataaacacgtgcggtgtgaagtcgtgcgttttcctgctgcagaacgacgttacactggttgttgtgaatgaatggaatgacgtgccgacatacaatatctcatcaccgtagtgtatgccggttaa
gi|4 : t---TT---AG-CCACTTGACGTAA--ACGTCATTCCATTTAACCCCAAA--C-AT---GTCC-TACA---GGCGATAAATC
gi|5 : aaagaaacaagtaacagattatgtccaataaagaaggacaaaaagctaccaacgtagcagtgagt----CATTATTTGATACAAATTCAT------A-AATACATT-----TCA-TTC--A---A----CAAGTCACGGAATTT---ATCCATTATCGTTTATACGAATAGCCACTAAAAATAAGGGG---GT-GC-AAA--A--GTTTCA-----TTGATAGCTTGTGTGAC-GCCCTGA--G-CTTGTGTGA-CGCCATTTGCACCGATGCATTCTTCACACAAAAGA--CATTGAACGAATCCGGT-----A-ATGCAGAATTGCCTTGGGA---ATGTTCCGCCATA-CGC---ACACTGAA-G-A--CGACGCAGAGGGTC--------C-------A---------GGG---TT---GG-CT-CTTGACGTAA--ATATCGCTCCATATTAT-CCAAA--C-AT---TTTCTTATA---GAttgtgatattgcaagccaaggtagcaaaaacacgttctcctgcggtaggcgcgttcaacaaacggcctatgcagtgttctgtttcatgcttgcctgcactgaagaatgacgttacactggtctgttgtgaatgaatggaatgaagtgttgatctcgtcacgatagcatacgccggttaaattggcctccactatgatcaaacgtt
gi|6 : TG-----TAGTATGTCGCATTATTTAATACAA-----T------GCATTGTCTT-----CCTATTC--A---AACATCAAATCAC---ATTTTATATCCATTATGGTTAGAACAAACAGATACTGAGAA-ACGGGG---GTTGC-AAA--AC-GTTTCA-----T-------------GA--G-TTTAATAG-CGTGTATGACCACCATTGGCACCGATGCACTCTTCACCTAC--GACGCATTGAACGAACCAGGT-----T-ATGCAGAAATGTC-TGGGAAATATATTCCGTCATA-TGCGTGACACACAA--AA--CGACGCAAAGCGTCAAA-----CGTAGCGGA---------GGGT--TT---AT-CT-CTTGATGCAG--ACGTCGTTCCAT
gi|7 : aaccg----CATTATTTGATACAAATTCAT------A-AATACATT-----TCA-TTC--A---A----CAAGTCACGGAATTT---ATCCATTATCGTTTATACGAATAGCCACTAAAAATAAGGGG---GT-GC-AAA--A--GTTTCA-----TTGATAGCTTGTGTGAC-GCCCTGA--G-CTTGTGTGA-CGCCATTTGCACCGATGCATTCTTCACACAAAAGA--CATTGAACGAATCCGGT-----A-ATGCAGAATTGCCTTGGGA---ATGTTCCGCCATA-CGC---ACACTGAA-G-A--CGACGCAGAGGGTC--------C-------A---------GGG---TT---GG-CT-CTTGACGTAA--ATATCGCTCCATATTAT-CCAAA--C-AT---TTTC-TATA---GA
gi|8 : ----CATTATTTGATACAAATTCAT------A-AATACATT-----TCA-TTC--A---A----CAAGTCACGGAATTT---ATCCATTATCGTTTATACGAATAGCCACTAAAAATAAGGGG---GT-GC-AAA--A--GTTTCA-----TTGATAGCTTGTGTGAC-GCCCTGA--G-CTTGTGTGA-CGCCATTTGCACCGATGCATTCTTCACACAAAAGA--CATTGAACGAATCCGGT-----A-ATGCAGAATTGCCTTGGGA---ATGTTCCGCCATA-CGC---ACACTGAA-G-A--CGACGCAGAGGGTC--------C-------A---------GGG---TT---GG-CT-CTTGACGTAA--ATATCGCTCCATATTAT-CCAAA--C-AT---TTTC-TATA---GA
gi|9 : T---ATCCATTATCGTTTATACGAATAGCCACTAAAAATAAGGGG---GT-GCCAAA--A--GTT-CA-----TTGATAGCTTGTGTGACCG-CCTGAT-GGCTTGTGTGACCGCCATTTGCACCGATGCATTCTTCACACAAAAGACTCATTGAACGAATCCGGT-----A-ATGCAGAATTGCCTTGGGA---ATGTTCCGCCATA-CGC---ACACTGAA-GAA--CGACGCAGAGTGGC--------C-------A---------GGG---TT---GG-CT-CTTGACGTAA--ATATCGCTCCATATTATCCC-AA--C-AT---TTTC-TAT
blockSeqs : A TTAGC CTAGCTAG GTCG CAAA C TGTCTGAC T C GTTTT A CA AACAT TAT G A AAG T C CC AA CAAGT CCGCCTGATGG G C CTAC CA A TAATAAT A TG AAT T GTG G AGA AG A C AAACGTAGCGGA GGT TTT C A CA T G TG A CAAG T .
blockSeqs : A . TAG . CAAA G AC A C . A . CAT . G T . . . . C . CCGCCTGATGG T C CTAC TG A TA A CG . . . A GA . A C CAACGTAGAAG T . . . . T C . . G . .
blockSeqs : C . TA . CAAA A AT A T . A . AT . T T . . . . . . CGCCCTGAG T C AAAA CT G T A TG . . . A AA . A C AAACGTAGCA . . . . . T C . . G . .
blockSeqs : T . TA . CAAA C AC A A . A . A . T T . . . . . . GTTTAATAG G C AAAA CG A A T TT . . . A CA . G T CCCCCAA . . . . . T C . . G . .
blockSeqs : TA . TAA C GC T A . A . A . A T . . . . . . CGCCCTGAG T C AAAA CT A A T TT . . . C GA . G T CA . . . . . A C . . T . .
blockSeqs : . CAA C A A C . . . A . T T . . . . . . CGCCCTGAG T . AAAA C C A A TT . . . C GA . A G CA . . . . . T . . . G . .
blockSeqs : . . C A A A . . . . T . . . . . . . GATAG T . AAAA . C T T TT . . . C G . G C CA . . . . . A . . . T . .
blockSeqs : . . A . A . . . T . . . . . . . CA . . AC . A A T TT . . . C A . G G CA . . . . . A . . . T . .
blockSeqs : . . C A T T . . . C G . G G CA . . . . . A . . . T . .
blockSeqs : C A . . . . . C G . . T CA . . . . . A . . . T .
blockSeqs : C . . . . .
blockSeqCons : CAAA AT****** CGCCCTGATG*** TT ***
originalCons : TAGATTCATATACAAAATATNATGTTGCATT-----ATG-----TAGTAT----CATTATTTGATACAAATTCAT------ACAATACNTT-----TCAATTC--A---A---TCAAGTCACGGAATTT---ATCCATTATCGTTTATACGAATAGCCACTAAAAATAAGGGG---GT-GC-AAA--A--GTTTCA-----TTGATAGCTTGTGTGAC-G-CCTGAT-G-CTTGTGTGACCGCCATTTGCACCGATGCATTCTTCACACANAAGAC-CATTGAACGAATCNGGT-----A-ATGCAGAANTGCCTTGGGA---ATGTTCCGCCATA-CGC---ACACTGAA-GAA--CGACGCAGAGCGTC--------C-------A---------GGG---TT---GG-CT-CTTGACGTAG--ACGTCGCTCCATNTTATCCCAAA--C-AT---GTTC-TATA---GACGATAAATCCG
finalCons : TAGATTCATATACAAAATATNATGTTGCATT-----ATG-----TAGTAT----CATTATTTGATACAAATTCAT------ACAATACNTT-----TCAATTC--AAT------CAAGTCACGGAATTT---ATCCATTATCGTTTATACGAATAGCCACTAAAAATAAGGGG---GT-GC-AAA--A--GTTTCA-----TTGATAGCTTGTGTGACGCCCTGATG---CTTGTGTGACCGCCATTTGCACCGATGCATTCTTCACACANAAGAC-CATTGAACGAATCNGGT-----A-ATGCAGAANTGCCTTGGGA---ATGTTCCGCCATA-CGC---ACACTGAA-GAA--CGACGCAGAGCGTC--------C-------A---------GGG---TT---GG-CT-CTTGACGTAG--ACGTCGCTCCATNTTATCCCAAA--C-AT---GTTC-TATA---GACGATAAATCCG
Alignments
lowQualScore : 22222 22222222 11111111 11111 22222222 11 11111 333333333 33 1111111 33333333333333333333333333 1
lowQualScore : 0 1 00000 44444444 9999 6666 1 55555555 2 1 11111 7 66 55555555 0 777 0 1 7 777 4 4 66 00 11111 3 0 2 777777777 4 1 9 5555 22 1 4444444 5 33 666 3 666 1 0 666 55 1 1 66666666666666666666666666 999 555 3 3 44 0 1 2 55 3 7777 3 777
lowQualScore : . . ..... ........ .... .... . ........ . . ..... . .. ........ . ... . . . ... . . .. .. ..... . . . ......... . . . .... .. . ....... . .. ... . ... . . ... .. . . .......................... ... ... . . .. . . . .. . .... . ...
lowQualScore : 8 0 00000 33333333 4444 6666 1 66666666 3 0 11111 3 99 55555555 5 888 1 9 4 888 4 4 11 66 11111 6 8 9 888888888 4 7 4 9999 22 0 5555555 8 11 444 6 444 4 4 333 00 8 2 00000000000000000000000000 222 888 3 3 66 8 0 7 00 6 7777 6 000
consensus : TAGATTCATATACAAAATATNATGTTGCATT-----ATG-----TAGTAT----CATTATTTGATACAAATTCAT------ACAATACNTT-----TCAATTC--A---A---TCAAGTCACGGAATTT---ATCCATTATCGTTTATACGAATAGCCACTAAAAATAAGGGG---GT-GC-AAA--A--GTTTCA-----TTGATAGCTTGTGTGACG-CCTGAT-G-CTTGTGTGACCGCCATTTGCACCGATGCATTCTTCACACANAAGAC-CATTGAACGAATCNGGT-----A-ATGCAGAANTGCCTTGGGA---ATGTTCCGCCATA-CGC---ACACTGAA-GAA--CGACGCAGAGCGTC--------C-------A---------GGG---TT---GG-CT-CTTGACGTAG--ACGTCGCTCCATNTTATCCCAAA--C-AT---GTTC-TATA---GACGATAAATCCG
Reference ( family-6866 ) : TAGATTCATATACAAAATATNATGTTGCATT-----ATG-----TAGTAT----CATTATTTGATACAAATTCAT------ACAATACNTT-----TCAATTC--A---A---TCAAGTCACGGAATTT---ATCCATTATCGTTTATACGAATAGCCACTAAAAATAAGGGG---GT-GC-AAA--A--GTTTCA-----TTGATAGCTTGTGTGACGCCCTGAT-G-CTTGTGTGACCGCCATTTGCACCGATGCATTCTTCACACANAAGAC-CATTGAACGAATCNGGT-----A-ATGCAGAANTGCCTTGGGA---ATGTTCCGCCATA-CGC---ACACTGAA-GAA--CGACGCAGAGCGTC--------C-------A---------GGG---TT---GG-CT-CTTGACGTAG--ACGTCGCTCCATNTTATCCCAAA--C-AT---GTTC-TATA---GACGATAAATCCG
gi|1 : -CTTGACGTAG--ACGTCGTTCCATTTTATCCCAAA--C-AC---GTTC-TATATAGGAGGA-AAATTC
gi|10 : TATATTCATGTATAAAA-ATTATGTTGCATT-----GTG------GGTAT----CAATATTCAATA-----TGAT------GCATTGTCTT-----TCAATTC--AAACA---TAAAATTGTAGAGTAT---GTCCCTTACGGCTGATATGAATACCCACTGACA-----------GT-TT-GAA--A--G----A-------AATAGGCTGTATGAC---------------------CGCATTTTGCATAGGTGCAGTCCTCACACGTACAATGCATTTAACAAATCAGGaggccatggtagcacattcacgttttgtgcggcggtgtgttgttatgctgcagaatgacgtaacgttggttgttgtgaatgaatggaatgacgtgctggcgtacaatatcgtcacgatagcatatgccggttaaaatgctctccactttcaccatatgttgtaaatccagaccagaccatgtaacgctccctccgctgaattggcggcgctgaaatgcgcatacgttaatgtagcgttctccgacacgacggtaagctcgggcacgaccgtgacgtcactgctgtcgtgatgaaatatccactcatccggaaatagaacttccgttgttgaaacggtaatggttcctacaccacgcaaacttcccaacacggtgatgtcagagcagaacagggctggccatcaaaaagaatcgaacgcgatatttaacaaatg
gi|11 : tactagcggagagaaaaaaagagtatagtttagtagttttatctaTCACGGATTGT---GTCTATTATGGTTGATACGAACAGCCACTGAAAAAAAGAGG---GC-CC-TAACCA--GTTTCACAAGTTTAACAGC--GTGT-ACA-------------GTATGACTGCAATTTGCACTAATGCATTCCGCACACCTACAACACATTGAAGAAACCAAAT-----T-ATGCAG----------------ATGTTTCGCCATA-TGT---GC----AA-GAA--CAAAGCAAAACCAC--------C-------A------------------------------ATGCAGCAAGG-------ATTTT----CAAA--C-AT---GTTC-TACA---GACGATAAATCCG
gi|12 : agaATTCTTCACATCTACGATGCATTCATGGAATCAGAT-----T-ATGCAGAAATGCCTGGAGA---ATGTTCTGCCATA-TGC---ATAGTAAA-GAA--CGCCGCA-ACCCCC--------CCCCCA--A---------CCG---TT---GGCCT-CTTGACGAAG--ACGT---TCCATTTCAAGCCAAATGT-AT---GTTC-TATA---GGCAATACATCgtga
gi|13 : gtttcacaactttgaaagcaagtactagtattatcgcaaggATTGAACAAATCGGGTTAATAATATGCAGAAATGCCCGAGGA---ATGTTTAGCTATG-TGC---GCAATAAAAGAA--CGATGAAAAGCATCAAACGTAGC-------A---------AGGGGTTT---GG-CT-CTTGACATAG--ACATCATTCTATTTCAT-CCAAA--CAAT---GTTC-TATA---GGCGATAAATC
gi|14 : tACAAAATAAAATGTTGCATT-----ATG-----TA-TAT----CATTATTTAATAT-AATGCATTGTCTGAC----TCTT-----TCAATTC--A---A---
gi|15 : actagcgggggaaaagaagctgtgtcgtttagtaattttaaagcAGATTCATATACCAAATGCAATGTTGTATA-----ATG-----TA-TAT----CATTATTTGATATAa
gi|16 : gtgtagtttagtaattttatttacTAGATTCATATACAAAATATCATGTTGCATT-----ATG-----TA-TAT----CATTATTTAATG-----TGAT------ACATTGTCTT-----TCAATttagattgtctttcgatcgcataattatgcaaagt
gi|17 : taccggaaaaaagaaactagttttaTCAGGT-----A-ATGCAGAAATGCCTGGGAA---GTGTTCGGTTATATTGC---TCAATAAA-AAAAGCTACGCAAAGCATC--------C-------A---------ACG---TA---GG-ca
gi|2 : caacTTAAT------ATAATACTTTGTTTTTCAATTCCAAC--A---TCAAATCATGGATAAT---GTTCATTATTCTTGATACAAACAGCTATTAAAAA-AGGGGGAAGGG-GC-AAA--AAAGTTTC-------TCA-AGTTT---TA-------GATAG-CGTGTATTGCTGCCATTCACACCGATGCAATCTCCGCAC------C-TAC------AATCAGGTT----A-ATAT-GAA--------GAA---AC---CCGTTATA-TGC---ACAATAGA-CAA--CGATACTAAGTGAC--------C-------AACGTAGAAGGGG---TTTTTGG-CT-CTTGACGTAG--ACGTTGTTCCATTTCATCCCAAA--C-ATCAAGTTT-TATA---GACAATAAACCggggca
gi|3 : tatATATTCAAAATGTTATTTTGCATTTTAGCATACTAGCTAGTAT----CATTATTTGATACAAATTCAT------ACAATACATT-----TCAATTC--A---A---TCAAGTCACGGAATTT---ATCCATTATCGTTTATACGAATAGCCACTAAAAATAAGGGG---GT-GC-AAA--A--GTTTCA-----TTGATAGCTTGTGTGACCGCCTGATGG-CTTGTGTGACCGCCATTTGCACCGATGCATTCTTCACACAAAAGACTCATTGAACGAATCCGGT-----A-ATGCAGAATTGCCTTGGGA---ATGTTCCGCCATA-CGC---ACACTGAA-GAA--CGACGCAGAGTGTC--------C-------A---------GGG---TT---GG-CT-CTTGACGTAA--ATATCGCTCCATATTATCCCAAA--C-AT---TTTC-TATA---GACGTTAAATCCGacgtgacattgaaggtcagatagtcactataaacacgtgcggtgtgaagtcgtgcgttttcctgctgcagaacgacgttacactggttgttgtgaatgaatggaatgacgtgccgacatacaatatctcatcaccgtagtgtatgccggttaa
gi|4 : t---TT---AG-CCACTTGACGTAA--ACGTCATTCCATTTAACCCCAAA--C-AT---GTCC-TACA---GGCGATAAATC
gi|5 : aaagaaacaagtaacagattatgtccaataaagaaggacaaaaagctaccaacgtagcagtgagt----CATTATTTGATACAAATTCAT------A-AATACATT-----TCA-TTC--A---A----CAAGTCACGGAATTT---ATCCATTATCGTTTATACGAATAGCCACTAAAAATAAGGGG---GT-GC-AAA--A--GTTTCA-----TTGATAGCTTGTGTGACGCCCTGA--G-CTTGTGTGA-CGCCATTTGCACCGATGCATTCTTCACACAAAAGA--CATTGAACGAATCCGGT-----A-ATGCAGAATTGCCTTGGGA---ATGTTCCGCCATA-CGC---ACACTGAA-G-A--CGACGCAGAGGGTC--------C-------A---------GGG---TT---GG-CT-CTTGACGTAA--ATATCGCTCCATATTAT-CCAAA--C-AT---TTTCTTATA---GAttgtgatattgcaagccaaggtagcaaaaacacgttctcctgcggtaggcgcgttcaacaaacggcctatgcagtgttctgtttcatgcttgcctgcactgaagaatgacgttacactggtctgttgtgaatgaatggaatgaagtgttgatctcgtcacgatagcatacgccggttaaattggcctccactatgatcaaacgtt
gi|6 : TG-----TAGTATGTCGCATTATTTAATACAA-----T------GCATTGTCTT-----CCTATTC--A---AACATCAAATCAC---ATTTTATATCCATTATGGTTAGAACAAACAGATACTGAGAA-ACGGGG---GTTGC-AAA--AC-GTTTCA-----T-GA--------GT------TTAATAG-CGTGTATGACCACCATTGGCACCGATGCACTCTTCACCTAC--GACGCATTGAACGAACCAGGT-----T-ATGCAGAAATGTC-TGGGAAATATATTCCGTCATA-TGCGTGACACACAA--AA--CGACGCAAAGCGTCAAA-----CGTAGCGGA---------GGGT--TT---AT-CT-CTTGATGCAG--ACGTCGTTCCAT
gi|7 : aaccg----CATTATTTGATACAAATTCAT------A-AATACATT-----TCA-TTC--A---A----CAAGTCACGGAATTT---ATCCATTATCGTTTATACGAATAGCCACTAAAAATAAGGGG---GT-GC-AAA--A--GTTTCA-----TTGATAGCTTGTGTGACGCCCTGA--G-CTTGTGTGA-CGCCATTTGCACCGATGCATTCTTCACACAAAAGA--CATTGAACGAATCCGGT-----A-ATGCAGAATTGCCTTGGGA---ATGTTCCGCCATA-CGC---ACACTGAA-G-A--CGACGCAGAGGGTC--------C-------A---------GGG---TT---GG-CT-CTTGACGTAA--ATATCGCTCCATATTAT-CCAAA--C-AT---TTTC-TATA---GA
gi|8 : ----CATTATTTGATACAAATTCAT------A-AATACATT-----TCA-TTC--A---A----CAAGTCACGGAATTT---ATCCATTATCGTTTATACGAATAGCCACTAAAAATAAGGGG---GT-GC-AAA--A--GTTTCA-----TTGATAGCTTGTGTGACGCCCTGA--G-CTTGTGTGA-CGCCATTTGCACCGATGCATTCTTCACACAAAAGA--CATTGAACGAATCCGGT-----A-ATGCAGAATTGCCTTGGGA---ATGTTCCGCCATA-CGC---ACACTGAA-G-A--CGACGCAGAGGGTC--------C-------A---------GGG---TT---GG-CT-CTTGACGTAA--ATATCGCTCCATATTAT-CCAAA--C-AT---TTTC-TATA---GA
gi|9 : T---ATCCATTATCGTTTATACGAATAGCCACTAAAAATAAGGGG---GT-GCCAAA--A--GTT-CA-----TTGATAGCTTGTGTGACCGCCTGAT-GGCTTGTGTGACCGCCATTTGCACCGATGCATTCTTCACACAAAAGACTCATTGAACGAATCCGGT-----A-ATGCAGAATTGCCTTGGGA---ATGTTCCGCCATA-CGC---ACACTGAA-GAA--CGACGCAGAGTGGC--------C-------A---------GGG---TT---GG-CT-CTTGACGTAA--ATATCGCTCCATATTATCCC-AA--C-AT---TTTC-TAT