lowQualScore : 555 1 1 33333 1 1 111 22 1 222 111 111 22 1 1 22 22 33 333 11 2 444444 33333 11 44444444 111111 111111111 1 22 22222222222 2 7777777777777
lowQualScore : 2 6 666 6 3 0 33333 6 7 3 3 666 00 2 333 6 666 0 666 00 8 3 3 4 77 33 00 000 88 0 4 3 55 2 2 777777 33333 7 7 44 33333333 4 4 888888 4 444444444 4 4 777 4 3 3 3 3 3 3 3 44 8 9 2 3 2 3 66 6 3 44444444444 8 3 7777777777777 55
lowQualScore : . . ... . . . ..... . . . . ... .. . ... . ... . ... .. . . . . .. .. .. ... .. . . . .. . . ...... ..... . . .. ........ . . ...... . ......... . . ... . . . . . . . . .. . . . . . . .. . . ........... . . ............. ..
lowQualScore : 5 7 000 0 3 7 33333 7 3 3 3 777 00 3 333 7 777 7 777 77 3 3 3 0 55 00 55 000 00 0 0 0 55 5 5 555555 33333 3 3 00 33333333 2 0 111111 0 555555555 0 0 000 0 6 6 6 6 6 6 3 22 5 2 4 1 3 1 77 2 1 66666666666 8 3 4444444444444 00
consensus : TGGANGGTATTGCGTCA--CTCAA-CGT-AAAC-----TTCCGTTGCTT-TCGACGAGTTGGGG-CAG-G-TGT-CGAGGACGT---TTCGGATCA-C-TGAGTGTTTAATACGG-C-ATGTAAAGTTA-AGCAG-ACGAT-AGGGAGATGTCNTTGGGCCTCTTTTNACCAACTTAGATCTCGCCAAGTAAACTGGTAGACAAAGAGGAGAAATCGTNTGANANNAAGCCGTGAANCNAGNNCCCCTCCCCC-----AGAAATCCAAGATGGC-GAGTGTCGTCCCTTTACNCTTTTT-AATGTACATATGAT-ACACCTTTTTT-----AA-AA-------C-GACGA-AANAT---GCGG-ATTTTGGTGG-TGGATTT-T-ATT-TA-TATTA-TTTAGGGGT-GGGTTT--TATTT-ACAT-AATTTA-TTATTCGG-G-AGCAAATAATACCATA---G--TTCA-TTAT-CT-GAC---A----ACC--GAGCCCCTGT
Reference ( gi|3 ) : TGGAGGGTATTGCGTCAACTTCAAATGT-AGAC-----TTCCGTTGCTT-TCGATGAGTTGGGG-CAG-G-TGT-CGAGGATGT---TTCGGATCA-C-TGAGTGTTTAATACGG-C-ATGTAAAGTTA-AGCTG-ACGAT-AGGGAGATGTTATTGGGCCT--TTTA-CCAACTTAGATCTCGCCA-G-AAACTGGTAGACAAAGAGGAGAAATC-TATAAAAACAAGCTGTGAACCGAGGG----TCCCCC-----AGAAATCCAAGATGGC-GAGTGTCGTCCCTTTACTTTTTTT-AATGTACATATGGT-ACACCTTTTTT-----AA-AA-------C-GACGA-AATAT---GCGG-ATTTTGGTGG-TGGATTT-T-ATT-TA-TATTA-TTTAGGGGT-GGGTTT--TA-TT-ACAT-AATTTA-TTATTT-G-G-AGCAAATAATAACATA---T--TTCAGTTAT-C--G-----A----ACC--GAGCCCCTGT
gi|1 : TGGAGGGTATTG-GTCA--CTCAATTGTTAGACCTTTCTTCCGT-GCTTGTCGATGAGTTGGGGTCAG-GGTGTTCGAGGG-AT---TTCGGATCAACATGAGTGTTTAATACGG-CCATGTAAAGTTATAGCTGCACGAT-AGGGAAGAATTTTTGGGCCT--TTTAACCAACTTAGAT-TCGCCAAG-AAACTGGTAGA--AAGAGGAGAAATC-TATAACACGAAGCTGTGAAACCAGGG----TCCCAC-----AG-AATCC-AGATGGCGGAGTGTCGTCCCTTTACTTTTTTTAAATGTACATATGGTAACACCTTTTTT------A-AA-------C-GACG--AATAT---GC-C-ATTTTGGTGG-TGA--TT-T-ATTATA-TAATA-TTTAGGGGTGGGGTTT--TATTT-AC-T-AATTTATTTATTTGG-G-AGCAAATAATACTATACGTT--TTCATTAAT-CCTGAACACA----ACC--GAGCCCCTG
gi|2 : aTGGACGGTATTGCGTCA--CTCAAACGT-AAAC-----TTC-GTTGCTT-TCGACAAGTTAGGA-CAGAG-TAC----GGATGTACGTT-GGATCA-C-TGCGTGTTTAGTATGGGC-ATGTAGAATTA--GCAG-ACGATGAGGGAGATGTCATTAGGTCTCTTTTC-CCAATTTAGA-CTCGCCA-GTAAACTGGTAGACAAAGAGGAGAAATTGTTTGAAAACAAGCCGTGAACCGAGCCCCCCTCCCCCTCCCAAGAAATCCAAGTGGGT-GAGTGTCGTCCCTTTACAC------AATAT-----TGAT-ACACCTTTTTTTG---AA-AA---------GACTA-AAAAT---GCGG-ATTTTGGTGG-TGGATTTAT-A-T-TA-TATTATTTTAGAGGT-GGGTTCTGTG-TT-AC-T-AA-TTA-TTATTCGG-G-AGCAAGTAATACCATA---G--TTCATTAAT-CT-GAC---A----ACCGAGAGCCCCTGT
gi|12 : CGCCA--TTCAA-TGT-AAAC-----TTCCGTTGCTT-TCAATGAGTTGGGG-CAG-G-TGT-CGAGGACGT---TTCGGATCA-C-TGAGTGTTTAATATGG-C-ATGTAAAGTTA-AGCAG-ACGAG-AGGGAGATG
gi|17 : gacactCCCA-----AGAAATCCAAGATGGT-GAGTGTCGTCCCTTTAC
gi|4 : -AATGTACAAATGAT-ACAC---TTTT-----AA-AAAAAACAAC-AACGA-AATAT---GCGG-ATTTTGGTGG-TGGATTT-T-ATT-TA-TATCA--TTAGGGGT-GGGTTT--AATTT-ACAT-AATTTA-TTGTTCGG-G-AGCAAATAATATAATC---G--TT-AATTAT-CT-GAC---A----ACC--GAGCCCCTGTa
gi|5 : TGTATATATGAT-ACACCTTTTTT-----TA-AA-------C-GATGA-AAAAG---GCGG-ATTTTGGTGG-TGGATTT-T-ATT-TA-TATTA-TTTAGGGGT-GGGCTT--TATTT-ACCT-AGTATT-TTATTCAG-A-AGCAAATGATGCAATA---G--TTCA-TTATCC--GAC---A----ACT--GAGCCCCTGT
gi|11 : GTACATATGAT-ACACCTTTT-------AA-AA-------C-GACGA-AATAT---GCGG-ATTTTGGTCG-TTGATTT-T-TTA-TA-TATTA-TTTA-GGGT--GGTTT--AA-TTAACAT-AATTTA-TTATTTGG-G-AGCAAATAATACAATA---G--TTTA-TTAT-C--
gi|10 : TATATA-GAT-ACATCCTTTTT-----AAGAA-------CAGACGAGAATATTGCGTGG-ATTTTGGTGG-TGTATTT-TTATT-TAACATTA-TTC-GCGGT-GGGTTT--TA-TT-ACATAAATTTA-TTATTTGG-G-AGCAAATAAT-ACATtca
gi|6 : CATATGAT-ACACCTTTTAT-----AA-AA-------C-GACGA-AAAAT---GCGG-ATTTTGGTGG-TGGATTT-T-ATT-TA-TATAA-TTTAGGGGT-GGGTTT--TATTT-ACAT-AATTTG-TTATTCGG-G-AGCAAATAAT-ACA-A---TTGTTC-GCTAT-CT-GAC---A----ACC--GAGCCCCTGggttat
gi|8 : TATGAT-ACACCTTTTTT-----GA-AA-------A-GACTA-AAAAT---GCGG-ATTTTGGTGG-TGGAATT-T-ATT-TA-TATTA-TTTAGAGGT-GGGTTC--TGTTT-ACTT-AA-TTA-TTATTCGG-G-AGCAAGTAATACCATA---G--TTCA-TTAT-CT-GAC---A----ACC--GAGCCC
gi|9 : TATGAT-AACCCTTTTTT-----TA-AA-------C-GA-GA-AATAT---GCGGGATTTTG-TGGCTGGATTT-C-ATT-TA-TATTA-TTTAAGGGT-GGGGTT--TA--T-ACAT-AA-TTA-TAATTT-G-G-AGC-AATAATAA-ATA---G--TTCA-TTAT-CT-GAC---A----ACC--GAGCCTC
gi|7 : -ACACCTTTTTTTAAATAA-AG-------C-GACGA-AAAAT---GCGG-ATTT-GGAGG-TGGATTT-T-ATT-CA-TATTA-TTTAGGAGT-GGGTTT--TATTT-ACAT-AATTTA-TCACTC-GAG-ATTAAATAATATC-TA---G--TTCA-TTGT-CT-G-----ACT--ACC--GAGTTCCct
gi|13 : cG-TGGGTTT-T-ATT-TA-CATAA-TTTA
gi|14 : TAGGGGT-GGGTTT--TC-TTTACAT-AATTTA-TC-----------CATACAATAG----------TTCA-TTAT-CT-G-----ACTTGACC--GAGCCCCTGTttgttcgggagcaaataataccatagttcattacctgacaaccgagccctt
gi|13 : GT-GGGTTT--TA-TTTACAT-AATTTA-TTGTTC-G-GGAGCAAATAATACCATA---G--TTCA-TTAC-CT-GAC---A----ACC--GAGCCCTTgg
gi|15 : --TA-TT-ATAT-AATTTA-TTATTC-GAA-AGCAAATAATACAATA---C--TTCA-TTAT-CT-GAC---A----ACC--GATTCCCTG
1 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|16 ): TTCGAGCAAATAAATTTAGTTCATTATCTGACAACCGGCCT
Alignments
lowQualScore : 11 333 1 22222 1 1 1 1 1 111 1 1 1 1 11 1 1 33 11 333 2 444444 22222 1 11111 111111111
lowQualScore : 1 2 33 222 0 55555 2 3 0 2 0 0 0 0 111 3 0 0 0 0 33 4 0 0 11 00 88 44 444 6 3 1 0 1 22 0 1 1 555555 55555 3 3 0 999 8 3 44444 3 222222222 3 1 666 3 3 3 3 3 3 3 3 2 1 44 2 1 55 2 33 2 2 33 555 44 44
lowQualScore : . . .. ... . ..... . . . . . . . . ... . . . . . .. . . . .. .. .. .. ... . . . . . .. . . . ...... ..... . . . ... . . ..... . ......... . . ... . . . . . . . . . . .. . . .. . .. . . .. ... .. ..
lowQualScore : 0 5 88 000 0 00000 5 2 0 0 0 0 0 0 222 2 0 0 0 0 22 0 0 0 77 33 33 00 333 7 3 0 7 0 00 7 0 0 333333 00000 2 2 0 000 0 6 11111 6 333333333 6 0 444 6 6 6 6 6 6 6 1 9 6 44 9 9 33 7 77 9 9 99 444 22 22
consensus : TGGAGGGTATTGCGTCA--CTCAAAT-GT-AGAC-----TTCCGTTGCTT-TCGACGAGTTGGGG-CAG-G-TGT-CGAGG-ACGTTTCGGATCA-C-TGAGTGTTTAATACGG-C-ATGTAAAGTTA-AGCNG-ACGAT-AGGGAGATGTTATTGGGCCT--TTTNACCAACTTAGATCTCGCCAGG-AAACTGGTAGACAAAGAGGAGAAATC-TATAAAAACAAGCCGTGAACCGAGGG----TCCCCC-----AGAAATCCAAGATGGCG-AGTGTCGTCCCTTTACTTTTTTTAA-TGTACATATGATA-CACCTTTTTT-----AA-AA-------C-GACGA-AANAT---GCGG-ATTTTGGTGG-TGGATTTT-AT-T-TA-TATTA-TTTAGGGGT-GGGTTTTAT-TTACATAA-TTTA-TTATTCGGGAGCAAATAATACNATA-G--TTCA-TT-A--TCTG---AC--AACC--GAGCCCCTGT
Reference ( family-6859 ) : TGGANGGTATTGCGTCA--CTCAA-C-GT-AAAC-----TTCCGTTGCTT-TCGACGAGTTGGGG-CAG-G-TGT-CGAGG-ACGTTTCGGATCA-C-TGAGTGTTTAATACGG-C-ATGTAAAGTTA-AGCAG-ACGAT-AGGGAGATGTCNTTGGGCCTCTTTTNACCAACTTAGATCTCGCCAAGTAAACTGGTAGACAAAGAGGAGAAATCGTNTGANANNAAGCCGTGAANCNAGNNCCCCTCCCCC-----AGAAATCCAAGATGGCG-AGTGTCGTCCCTTTACNCTTTTTAA-TGTACATATGATA-CACCTTTTTT-----AA-AA-------C-GACGA-AANAT---GCGG-ATTTTGGTGG-TGGATTTT-AT-T-TA-TATTA-TTTAGGGGT-GGGTTTTAT-TTACATAA-TTTA-TTATTCGGGAGCAAATAATACCATA-G--TTCA-TT-A--TCTG---AC--AACC--GAGCCCCTGT
gi|1 : TGGAGGGTATTG-GTCA--CTCAA-TTGTTAGACCTTTCTTCCGT-GCTTGTCGATGAGTTGGGGTCAG-GGTGTTCGAGG-G-ATTTCGGATCAACATGAGTGTTTAATACGG-CCATGTAAAGTTATAGCTGCACGAT-AGGGAAGAATTTTTGGGCCT--TTTAACCAACTTAGAT-TCGCCAAG-AAACTGGTAGA--AAGAGGAGAAATC-TATAACACGAAGCTGTGAAACCAGGG----TCCCAC-----AGAA-TCCA-GATGGCGGAGTGTCGTCCCTTTACTTTTTTTAAATGTACATATGGTAACACCTTTTTT-----AA-A--------C-GACGA-A-TAT---GCC--ATTTTGGTGG-TGA--TTT-AT-TATA-TAATA-TTTAGGGGTGGGGTTTTAT-TTAC-TAA-TTTATTTATTTGGGAGCAAATAATACTATACGTTTTCA-TT-AATCCTGAACAC--AACC--GAGCCCCTG
gi|10 : aTATATA-GATA-CATCCTTTTT-----AAGAA-------CAGACGAGAATATTGCGTGG-ATTTTGGTGG-TGTATTTTTAT-T-TAACATTA-TTC-GCGGT-GGGTTTTAT-T-ACATAAATTTA-TTATTTGGGAGCAAATAATA-CATG-G--TT
gi|11 : GTACATATGATA-CACCTTTT-------AA-AA-------C-GACGA-AATAT---GCGG-ATTTTGGTCG-TTGATTTT-TT-A-TA-TATTA-TTTA-GGGT--GGTTTAAT-TAACATAA-TTTA-TTATTTGGGAGCAAATAATACAATA-G--TTTA-TT-A--TCTat
gi|12 : CGCCA--TTCAA-T-GT-AAAC-----TTCCGTTGCTT-TCAATGAGTTGGGG-CAG-G-TGT-CGAGG-ACGTTTCGGATCA-C-TGAGTGTTTAATATGG-C-ATGTAAAGTTA-AGCAG-ACGAG-AGGGAGATGca
gi|13 : gacactGT-GGGTTTTAT-TTACATAA-TTTA-TTGTTCGGGAGCAAATAATACCATA-G--TTCA-TT-A--CCTG---AC--AACC--GAGCCCTT
gi|14 : TAGGGGT-GGGTTTTCT-TTACATAA-T----TTATCC-----------ATACAATA-G--TTCA-TT-A--TCTG---ACTTGACC--GAGCCCCTGT
gi|15 : -TTATATAA-TTTA-TTATTCGAAAGCAAATAATACAATA-C--TTCA-TT-A--TCTG---AC--AACC--GATTCCCTGgg
gi|16 : taGAGCAAATAA-ATT-TA-G--TTCA-TT-A--TCTG---AC--AACC--G-GCC
gi|17 : ttcCCCA-----AGAAATCCAAGATGGTG-AGTGTCGTCCCTTTACt
gi|2 : TGGACGGTATTGCGTCA--CTCAAAC-GT-AAAC-----TTC-GTTGCTT-TCGACAAGTTAGGA-CAGAG-TAC-GGATGTACGTT--GGATCA-C-TGCGTGTTTAGTATGGGC-ATGTAGAATTA--GCAG-ACGATGAGGGAGATGTCATTAGGTCTCTTTTC-CCAATTTAGA-CTCGCCA-GTAAACTGGTAGACAAAGAGGAGAAATTGTTTGAAAACAAGCCGTGAACCGAGCCCCCCTCCCCCTCCCAAGAAATCCAAGTGGGTG-AGTGTCGTCCCTTTACAC-----AA-TAT-----TGATA-CACCTTTTTTTG---AA-AA---------GACTA-AAAAT---GCGG-ATTTTGGTGG-TGGA-TTT-ATAT-TA-TATTATTTTAGAGGT-GGGTTCTGTGTTAC-TAA--TTA-TTATTCGGGAGCAAGTAATACCATA-G--TTCA-TTAA--TCTG---AC--AACCGAGAGCCCCTGTa
gi|3 : TGGAGGGTATTGCGTCAACTTCAAAT-GT-AGAC-----TTCCGTTGCTT-TCGATGAGTTGGGG-CAG-G-TGT-CGAGG-ATGTTTCGGATCA-C-TGAGTGTTTAATACGG-C-ATGTAAAGTTA-AGCTG-ACGAT-AGGGAGATGTTATTGGGCCT---TTTACCAACTTAGATCTCGCCAG--AAACTGGTAGACAAAGAGGAGAAATC-TATAAAAACAAGCTGTGAACCGAGGG----TCCCCC-----AGAAATCCAAGATGGCG-AGTGTCGTCCCTTTACTTTTTTTAA-TGTACATATGGTA-CACCTTTTTT-----AA-AA-------C-GACGA-AATAT---GCGG-ATTTTGGTGG-TGGATTTT-AT-T-TA-TATTA-TTTAGGGGT-GGGTTTTA--TTACATAA-TTTA-TTATTT-GGAGCAAATAATAACATA-T--TTCAGTT-A--TC-G-------AACC--GAGCCCCTGT
gi|4 : AA-TGTACAAATGATA-CAC---TTTT-----AA-AAAAAACAAC-AACGA-AATAT---GCGG-ATTTTGGTGG-TGGATTTT-AT-T-TA-TATCA-TT-AGGGGT-GGGTTTAAT-TTACATAA-TTTA-TTGTTCGGGAGCAAATAATATAATC-G--TTAA-TT-A--TCTG---AC--AACC--GAGCCCCTGT
gi|5 : -TGTATATATGATA-CACCTTTTTT-----TA-AA-------C-GATGA-AAAAG---GCGG-ATTTTGGTGG-TGGATTTT-AT-T-TA-TATTA-TTTAGGGGT-GGGCTTTAT-TTACCTAG-TATT-TTATTCAGAAGCAAATGATGCAATA-G--TTCA-TT-A--TCCG---AC--AACT--GAGCCCCTGT
gi|6 : CATATGATA-CACCTTTTAT-----AA-AA-------C-GACGA-AAAAT---GCGG-ATTTTGGTGG-TGGATTTT-AT-T-TA-TATAA-TTTAGGGGT-GGGTTTTAT-TTACATAA-TTTG-TTATTCGGGAGCAAATAATACAATT-G--TTCG-CT-A--TCTG---AC--AACC--GAGCCCCTG
gi|7 : A-CACCTTTTTTTAAATAA-AG-------C-GACGA-AAAAT---GCGG-ATTT-GGAGG-TGGATTTT-AT-T-CA-TATTA-TTTAGGAGT-GGGTTTTAT-TTACATAA-TTTA-TCACTCGAGATTAAATAATATC-TA-G--TTCA-TT-G--TCTG---AC--TACC--GAGTTCC
gi|8 : cTATGATA-CACCTTTTTT-----GA-AA-------A-GACTA-AAAAT---GCGG-ATTTTGGTGG-TGGAATTT-AT-T-TA-TATTA-TTTAGAGGT-GGGTTCTGT-TTACTTAA--TTA-TTATTCGGGAGCAAGTAATACCATA-G--TTCA-TT-A--TCTG---AC--AACC--GAGCCC
gi|9 : TATGATA-ACCCTTTTTT-----TA-AA-------C-GA-GA-AATAT---GCGGGATTTTG-TGGCTGGATTTC-AT-T-TA-TATTA-TTTAAGGGT-GGGGTTTA---TACATAA--TTA-TAATTT-GGAGC-AATAATA-AATA-G--TTCA-TT-A--TCTG---AC--AACC--GAGCCTC
Alignments
lowQualScore : 11 1 22222 1 1 1 1 1 111 1 1 1 1 11 1 1 1 1 11 1 1 2222 22222 1 111111 111111 111111111
lowQualScore : 2 33 9 0 55555 2 3 0 2 0 0 0 0 111 3 0 0 0 0 33 1 0 0 3 4 44 5 6 3 0 8888 55555 3 3 0 333333 3 555555 3 222222222 3 1 666 3 3 3 3 3 3 3 3 2 1 44 2 1 3 2 33 2 2 33 555 44 44
lowQualScore : . .. . . ..... . . . . . . . . ... . . . . . .. . . . . . .. . . . . .... ..... . . . ...... . ...... . ......... . . ... . . . . . . . . . . .. . . . . .. . . .. ... .. ..
lowQualScore : 5 88 8 0 00000 5 2 0 0 0 0 0 0 222 2 0 0 0 0 22 0 0 0 3 0 00 0 7 3 7 3333 00000 2 2 0 333333 6 666666 6 333333333 6 0 444 6 6 6 6 6 6 6 1 9 6 44 9 9 6 7 77 9 9 99 444 22 22
consensus : TGGAGGGTATTGCGTCA--CTCAAATGT-AGAC-----TTCCGTTGCTT-TCGACGAGTTGGGG-CAG-G-TGT-CGAGG-ACGTTTCGGATCA-C-TGAGTGTTTAATACGG-C-ATGTAAAGTTA-AGCNG-ACGAT-AGGGAGATGTTATTGGGCCT-TTT-ACCAACTTAGATCTCGCCAG-AAACTGGTAGACAAAGAGGAGAAATC-TATAAAAACAAGCCGTGAACCGAGGG----TCCCCC-----AGAAATCCAAGATGGC-GAGTGTCGTCCCTTTACTTTTTTT-AATGTACATATGAT-ACACCTTTTTT-----AA-AA-------C-GACGA-AANAT---GCGG-ATTTTGGTGG-TGGATTTT-AT-T-TA-TATTA-TTTAGGGGT-GGGTTTTAT-TTACATAA-TTTA-TTATTCGGGAGCAAATAATACNATA-G--TTCA-TT-A--TCTG---AC--AACC--GAGCCCCTGT
Reference ( family-6859 ) : TGGAGGGTATTGCGTCA--CTCAAATGT-AGAC-----TTCCGTTGCTT-TCGACGAGTTGGGG-CAG-G-TGT-CGAGG-ACGTTTCGGATCA-C-TGAGTGTTTAATACGG-C-ATGTAAAGTTA-AGCNG-ACGAT-AGGGAGATGTTATTGGGCCT-TTTNACCAACTTAGATCTCGCCAGGAAACTGGTAGACAAAGAGGAGAAATC-TATAAAAACAAGCCGTGAACCGAGGG----TCCCCC-----AGAAATCCAAGATGGC-GAGTGTCGTCCCTTTACTTTTTTT-AATGTACATATGAT-ACACCTTTTTT-----AA-AA-------C-GACGA-AANAT---GCGG-ATTTTGGTGG-TGGATTTT-AT-T-TA-TATTA-TTTAGGGGT-GGGTTTTAT-TTACATAA-TTTA-TTATTCGGGAGCAAATAATACNATA-G--TTCA-TT-A--TCTG---AC--AACC--GAGCCCCTGT
gi|1 : TGGAGGGTATTG-GTCA--CTCAATTGTTAGACCTTTCTTCCGT-GCTTGTCGATGAGTTGGGGTCAG-GGTGTTCGAGG-G-ATTTCGGATCAACATGAGTGTTTAATACGG-CCATGTAAAGTTATAGCTGCACGAT-AGGGAAGAATTTTTGGGCCT-TTTAACCAACTTAGAT-TCGCCAAGAAACTGGTAGA--AAGAGGAGAAATC-TATAACACGAAGCTGTGAAACCAGGG----TCCCAC-----AG-AATCC-AGATGGCGGAGTGTCGTCCCTTTACTTTTTTTAAATGTACATATGGTAACACCTTTTTT------A-AA-------C-GACG--AATAT---GC-C-ATTTTGGTGG-TGA--TTT-AT-TATA-TAATA-TTTAGGGGTGGGGTTTTAT-TTAC-TAA-TTTATTTATTTGGGAGCAAATAATACTATACGTTTTCA-TT-AATCCTGAACAC--AACC--GAGCCCCTG
gi|10 : aTATATA-GAT-ACATCCTTTTT-----AAGAA-------CAGACGAGAATATTGCGTGG-ATTTTGGTGG-TGTATTTTTAT-T-TAACATTA-TTC-GCGGT-GGGTTTTAT-T-ACATAAATTTA-TTATTTGGGAGCAAATAATAC-ATG-G--TT
gi|11 : GTACATATGAT-ACACCTTTT-------AA-AA-------C-GACGA-AATAT---GCGG-ATTTTGGTCG-TTGATTTT-TT-A-TA-TATTA-TTTA-GGGT--GGTTTAAT-TAACATAA-TTTA-TTATTTGGGAGCAAATAATACAATA-G--TTTA-TT-A--TCTat
gi|12 : CGCCA--TTCAA-TGT-AAAC-----TTCCGTTGCTT-TCAATGAGTTGGGG-CAG-G-TGT-CGAGG-ACGTTTCGGATCA-C-TGAGTGTTTAATATGG-C-ATGTAAAGTTA-AGCAG-ACGAG-AGGGAGATGca
gi|13 : gacactGT-GGGTTTTAT-TTACATAA-TTTA-TTGTTCGGGAGCAAATAATACCATA-G--TTCA-TT-A--CCTG---AC--AACC--GAGCCCTT
gi|14 : TAGGGGT-GGGTTTTCT-TTACATAA-T----TTATCC-----------ATACAATA-G--TTCA-TT-A--TCTG---ACTTGACC--GAGCCCCTGT
gi|15 : -TTATATAA-TTTA-TTATTCGAAAGCAAATAATACAATA-C--TTCA-TT-A--TCTG---AC--AACC--GATTCCCTGgg
gi|16 : taGAGCAAATAA-ATT-TA-G--TTCA-TT-A--TCTG---AC--AACC--G-GCC
gi|17 : ttcCCCA-----AGAAATCCAAGATGGT-GAGTGTCGTCCCTTTACt
gi|2 : TGGACGGTATTGCGTCA--CTCAAACGT-AAAC-----TTC-GTTGCTT-TCGACAAGTTAGGA-CAGAG-TAC-GGATGTACGTT--GGATCA-C-TGCGTGTTTAGTATGGGC-ATGTAGAATTA--GCAG-ACGATGAGGGAGATGTCATTAGGTCTCTTTTCCCAATTTAGA-CTCGCCAGTAAACTGGTAGACAAAGAGGAGAAATTGTTTGAAAACAAGCCGTGAACCGAGCCCCCCTCCCCCTCCCAAGAAATCCAAGTGGGT-GAGTGTCGTCCCTTTACAC------AATAT-----TGAT-ACACCTTTTTTTG---AA-AA---------GACTA-AAAAT---GCGG-ATTTTGGTGG-TGGA-TTT-ATAT-TA-TATTATTTTAGAGGT-GGGTTCTGTGTTAC-TAA--TTA-TTATTCGGGAGCAAGTAATACCATA-G--TTCA-TTAA--TCTG---AC--AACCGAGAGCCCCTGTa
gi|3 : TGGAGGGTATTGCGTCAACTTCAAATGT-AGAC-----TTCCGTTGCTT-TCGATGAGTTGGGG-CAG-G-TGT-CGAGG-ATGTTTCGGATCA-C-TGAGTGTTTAATACGG-C-ATGTAAAGTTA-AGCTG-ACGAT-AGGGAGATGTTATTGGGCCT-TTT-ACCAACTTAGATCTCGCCAG-AAACTGGTAGACAAAGAGGAGAAATC-TATAAAAACAAGCTGTGAACCGAGGG----TCCCCC-----AGAAATCCAAGATGGC-GAGTGTCGTCCCTTTACTTTTTTT-AATGTACATATGGT-ACACCTTTTTT-----AA-AA-------C-GACGA-AATAT---GCGG-ATTTTGGTGG-TGGATTTT-AT-T-TA-TATTA-TTTAGGGGT-GGGTTTTA--TTACATAA-TTTA-TTATTT-GGAGCAAATAATAACATA-T--TTCAGTT-A--TC-G-------AACC--GAGCCCCTGT
gi|4 : -AATGTACAAATGAT-ACAC---TTTT-----AA-AAAAAACAAC-AACGA-AATAT---GCGG-ATTTTGGTGG-TGGATTTT-AT-T-TA-TATCA-TT-AGGGGT-GGGTTTAAT-TTACATAA-TTTA-TTGTTCGGGAGCAAATAATATAATC-G--TTAA-TT-A--TCTG---AC--AACC--GAGCCCCTGT
gi|5 : TGTATATATGAT-ACACCTTTTTT-----TA-AA-------C-GATGA-AAAAG---GCGG-ATTTTGGTGG-TGGATTTT-AT-T-TA-TATTA-TTTAGGGGT-GGGCTTTAT-TTACCTAG-TATT-TTATTCAGAAGCAAATGATGCAATA-G--TTCA-TT-A--TCCG---AC--AACT--GAGCCCCTGT
gi|6 : CATATGAT-ACACCTTTTAT-----AA-AA-------C-GACGA-AAAAT---GCGG-ATTTTGGTGG-TGGATTTT-AT-T-TA-TATAA-TTTAGGGGT-GGGTTTTAT-TTACATAA-TTTG-TTATTCGGGAGCAAATAATACAATT-G--TTCG-CT-A--TCTG---AC--AACC--GAGCCCCTG
gi|7 : -ACACCTTTTTTTAAATAA-AG-------C-GACGA-AAAAT---GCGG-ATTT-GGAGG-TGGATTTT-AT-T-CA-TATTA-TTTAGGAGT-GGGTTTTAT-TTACATAA-TTTA-TCACTCGAGATTAAATAATATC-TA-G--TTCA-TT-G--TCTG---AC--TACC--GAGTTCC
gi|8 : cTATGAT-ACACCTTTTTT-----GA-AA-------A-GACTA-AAAAT---GCGG-ATTTTGGTGG-TGGAATTT-AT-T-TA-TATTA-TTTAGAGGT-GGGTTCTGT-TTACTTAA--TTA-TTATTCGGGAGCAAGTAATACCATA-G--TTCA-TT-A--TCTG---AC--AACC--GAGCCC
gi|9 : TATGAT-AACCCTTTTTT-----TA-AA-------C-GA-GA-AATAT---GCGGGATTTTG-TGGCTGGATTTC-AT-T-TA-TATTA-TTTAAGGGT-GGGGTTTA---TACATAA--TTA-TAATTT-GGAGC-AATAATA-AATA-G--TTCA-TT-A--TCTG---AC--AACC--GAGCCTC
Alignments
lowQualScore : 11 1 22222 1 1 1 1 1 111 1 1 1 1 11 1 1 11 1 11 111 1 2222 22222 1 1 111111 1111111
lowQualScore : 2 33 9 0 55555 2 3 0 2 0 0 0 0 111 3 0 0 0 0 33 1 0 0 88 3 44 666 6 3 0 8888 55555 3 3 0 7 0 3 3 222222 3 1111111 3 3 1 666 3 3 3 3 3 3 3 3 2 1 44 2 1 3 2 33 2 2 33 555 44 44
lowQualScore : . .. . . ..... . . . . . . . . ... . . . . . .. . . . .. . .. ... . . . .... ..... . . . . . . . ...... . ....... . . . ... . . . . . . . . . . .. . . . . .. . . .. ... .. ..
lowQualScore : 5 88 8 0 00000 5 2 0 0 0 0 0 0 222 2 0 0 0 0 22 0 0 0 33 3 00 777 7 3 7 3333 00000 2 2 0 3 0 6 6 000000 6 8888888 6 6 0 444 6 6 6 6 6 6 6 1 9 6 44 9 9 6 7 77 9 9 99 444 22 22
consensus : TGGAGGGTATTGCGTCA--CTCAAATGT-AGAC-----TTCCGTTGCTT-TCGACGAGTTGGGG-CAG-G-TGT-CGAGG-ACGTTTCGGATCA-C-TGAGTGTTTAATACGG-C-ATGTAAAGTTA-AGCNG-ACGAT-AGGGAGATGTTATTGGGCCT--TTTA-CCAACTTAGATCTCGCCA-G-AAACTGGTAGACAAAGAGGAGAAATC-TATAAAAACAAGCCGTGAACCGAG----GGTCCCCC-----AGAAATCCAAGATGGC-GAGTGTCGTCCCTTTACTTTTTTT-AATGTACATATGAT-ACACC-TTTTTT-----AA-AA-------C-GACGA-AANAT---GCGG-ATTTTGGTGG-TGGATTTT-AT-T-TA-TATTA-TTTAGGGGT-GGGTTTTAT-TTACATAA-TTTA-TTATTCGGGAGCAAATAATACNATA-G--TTCA-TT-A--TCTG---AC--AACC--GAGCCCCTGT
Reference ( family-6859 ) : TGGAGGGTATTGCGTCA--CTCAAATGT-AGAC-----TTCCGTTGCTT-TCGACGAGTTGGGG-CAG-G-TGT-CGAGG-ACGTTTCGGATCA-C-TGAGTGTTTAATACGG-C-ATGTAAAGTTA-AGCNG-ACGAT-AGGGAGATGTTATTGGGCCT--TTTA-CCAACTTAGATCTCGCCA-G-AAACTGGTAGACAAAGAGGAGAAATC-TATAAAAACAAGCCGTGAACCGAG----GGTCCCCC-----AGAAATCCAAGATGGC-GAGTGTCGTCCCTTTACTTTTTTT-AATGTACATATGAT-ACACC-TTTTTT-----AA-AA-------C-GACGA-AANAT---GCGG-ATTTTGGTGG-TGGATTTT-AT-T-TA-TATTA-TTTAGGGGT-GGGTTTTAT-TTACATAA-TTTA-TTATTCGGGAGCAAATAATACNATA-G--TTCA-TT-A--TCTG---AC--AACC--GAGCCCCTGT
gi|1 : TGGAGGGTATTG-GTCA--CTCAATTGTTAGACCTTTCTTCCGT-GCTTGTCGATGAGTTGGGGTCAG-GGTGTTCGAGG-G-ATTTCGGATCAACATGAGTGTTTAATACGG-CCATGTAAAGTTATAGCTGCACGAT-AGGGAAGAATTTTTGGGCCT--TTTAACCAACTTAGAT-TCGCCAAG-AAACTGGTAGA--AAGAGGAGAAATC-TATAACACGAAGCTGTGAAACCAG----GGTCCCAC-----AG-AATCC-AGATGGCGGAGTGTCGTCCCTTTACTTTTTTTAAATGTACATATGGTAACACC-TTTTTT------A-AA-------C-GACG--AATAT---GC-C-ATTTTGGTGG-TGA--TTT-AT-TATA-TAATA-TTTAGGGGTGGGGTTTTAT-TTAC-TAA-TTTATTTATTTGGGAGCAAATAATACTATACGTTTTCA-TT-AATCCTGAACAC--AACC--GAGCCCCTG
gi|10 : aTATATA-GAT-ACATC-CTTTTT-----AAGAA-------CAGACGAGAATATTGCGTGG-ATTTTGGTGG-TGTATTTTTAT-T-TAACATTA-TTC-GCGGT-GGGTTTTAT-T-ACATAAATTTA-TTATTTGGGAGCAAATAATAC-ATG-G--TT
gi|11 : GTACATATGAT-ACACC-TTTT-------AA-AA-------C-GACGA-AATAT---GCGG-ATTTTGGTCG-TTGATTTT-TT-A-TA-TATTA-TTTA-GGGT--GGTTTAAT-TAACATAA-TTTA-TTATTTGGGAGCAAATAATACAATA-G--TTTA-TT-A--TCTat
gi|12 : CGCCA--TTCAA-TGT-AAAC-----TTCCGTTGCTT-TCAATGAGTTGGGG-CAG-G-TGT-CGAGG-ACGTTTCGGATCA-C-TGAGTGTTTAATATGG-C-ATGTAAAGTTA-AGCAG-ACGAG-AGGGAGATGca
gi|13 : gacactGT-GGGTTTTAT-TTACATAA-TTTA-TTGTTCGGGAGCAAATAATACCATA-G--TTCA-TT-A--CCTG---AC--AACC--GAGCCCTT
gi|14 : TAGGGGT-GGGTTTTCT-TTACATAA-T----TTATCC-----------ATACAATA-G--TTCA-TT-A--TCTG---ACTTGACC--GAGCCCCTGT
gi|15 : -TTATATAA-TTTA-TTATTCGAAAGCAAATAATACAATA-C--TTCA-TT-A--TCTG---AC--AACC--GATTCCCTGgg
gi|16 : taGAGCAAATAA-ATT-TA-G--TTCA-TT-A--TCTG---AC--AACC--G-GCC
gi|17 : ttcCCCA-----AGAAATCCAAGATGGT-GAGTGTCGTCCCTTTACt
gi|2 : TGGACGGTATTGCGTCA--CTCAAACGT-AAAC-----TTC-GTTGCTT-TCGACAAGTTAGGA-CAGAG-TAC-GGATGTACGTT--GGATCA-C-TGCGTGTTTAGTATGGGC-ATGTAGAATTA--GCAG-ACGATGAGGGAGATGTCATTAGGTCTCTTTTC-CCAATTTAGA-CTCGCCA-GTAAACTGGTAGACAAAGAGGAGAAATTGTTTGAAAACAAGCCGTGAACCGAGCCCCCCTCCCCCTCCCAAGAAATCCAAGTGGGT-GAGTGTCGTCCCTTTAC-----AC-AATAT-----TGAT-ACACCTTTTTTT-----GA-AA-------A-GACTA-AAAAT---GCGG-ATTTTGGTGG-TGGA-TTT-ATAT-TA-TATTATTTTAGAGGT-GGGTTCTGTGTTAC-TAA--TTA-TTATTCGGGAGCAAGTAATACCATA-G--TTCA-TTAA--TCTG---AC--AACCGAGAGCCCCTGTa
gi|3 : TGGAGGGTATTGCGTCAACTTCAAATGT-AGAC-----TTCCGTTGCTT-TCGATGAGTTGGGG-CAG-G-TGT-CGAGG-ATGTTTCGGATCA-C-TGAGTGTTTAATACGG-C-ATGTAAAGTTA-AGCTG-ACGAT-AGGGAGATGTTATTGGGCCT--TTTA-CCAACTTAGATCTCGCCA-G-AAACTGGTAGACAAAGAGGAGAAATC-TATAAAAACAAGCTGTGAACCGAG----GGTCCCCC-----AGAAATCCAAGATGGC-GAGTGTCGTCCCTTTACTTTTTTT-AATGTACATATGGT-ACACC-TTTTTT-----AA-AA-------C-GACGA-AATAT---GCGG-ATTTTGGTGG-TGGATTTT-AT-T-TA-TATTA-TTTAGGGGT-GGGTTTTA--TTACATAA-TTTA-TTATTT-GGAGCAAATAATAACATA-T--TTCAGTT-A--TC-G-------AACC--GAGCCCCTGT
gi|4 : -AATGTACAAATGAT-ACAC----TTTT-----AA-AAAAAACAAC-AACGA-AATAT---GCGG-ATTTTGGTGG-TGGATTTT-AT-T-TA-TATCA-TT-AGGGGT-GGGTTTAAT-TTACATAA-TTTA-TTGTTCGGGAGCAAATAATATAATC-G--TTAA-TT-A--TCTG---AC--AACC--GAGCCCCTGT
gi|5 : TGTATATATGAT-ACACC-TTTTTT-----TA-AA-------C-GATGA-AAAAG---GCGG-ATTTTGGTGG-TGGATTTT-AT-T-TA-TATTA-TTTAGGGGT-GGGCTTTAT-TTACCTAG-TATT-TTATTCAGAAGCAAATGATGCAATA-G--TTCA-TT-A--TCCG---AC--AACT--GAGCCCCTGT
gi|6 : CATATGAT-ACACC-TTTTAT-----AA-AA-------C-GACGA-AAAAT---GCGG-ATTTTGGTGG-TGGATTTT-AT-T-TA-TATAA-TTTAGGGGT-GGGTTTTAT-TTACATAA-TTTG-TTATTCGGGAGCAAATAATACAATT-G--TTCG-CT-A--TCTG---AC--AACC--GAGCCCCTG
gi|7 : -ACACC-TTTTTTTAAATAA-AG-------C-GACGA-AAAAT---GCGG-ATTT-GGAGG-TGGATTTT-AT-T-CA-TATTA-TTTAGGAGT-GGGTTTTAT-TTACATAA-TTTA-TCACTCGAGATTAAATAATATC-TA-G--TTCA-TT-G--TCTG---AC--TACC--GAGTTCC
gi|8 : cTATGAT-ACACC-TTTTTT-----GA-AA-------A-GACTA-AAAAT---GCGG-ATTTTGGTGG-TGGAATTT-AT-T-TA-TATTA-TTTAGAGGT-GGGTTCTGT-TTACTTAA--TTA-TTATTCGGGAGCAAGTAATACCATA-G--TTCA-TT-A--TCTG---AC--AACC--GAGCCC
gi|9 : TATGAT-AACCC-TTTTTT-----TA-AA-------C-GA-GA-AATAT---GCGGGATTTTG-TGGCTGGATTTC-AT-T-TA-TATTA-TTTAAGGGT-GGGGTTTA---TACATAA--TTA-TAATTT-GGAGC-AATAATA-AATA-G--TTCA-TT-A--TCTG---AC--AACC--GAGCCTC
Alignments
lowQualScore : 11 1 22222 1 1 1 1 1 111 1 1 1 1 11 1 1 11 1 11 111 1 2222 22222 1 1 111111 1111111
lowQualScore : 2 33 9 0 55555 2 3 0 2 0 0 0 0 111 3 0 0 0 0 33 1 0 0 88 3 44 666 6 3 0 8888 55555 3 3 0 7 0 3 3 222222 3 1111111 3 3 1 666 3 3 3 3 3 3 3 3 2 1 44 2 1 3 2 33 2 2 33 555 44 44
lowQualScore : . .. . . ..... . . . . . . . . ... . . . . . .. . . . .. . .. ... . . . .... ..... . . . . . . . ...... . ....... . . . ... . . . . . . . . . . .. . . . . .. . . .. ... .. ..
lowQualScore : 5 88 8 0 00000 5 2 0 0 0 0 0 0 222 2 0 0 0 0 22 0 0 0 33 3 00 777 7 3 7 3333 00000 2 2 0 3 0 6 6 000000 6 8888888 6 6 0 444 6 6 6 6 6 6 6 1 9 6 44 9 9 6 7 77 9 9 99 444 22 22
consensus : TGGAGGGTATTGCGTCA--CTCAAATGT-AGAC-----TTCCGTTGCTT-TCGACGAGTTGGGG-CAG-G-TGT-CGAGG-ACGTTTCGGATCA-C-TGAGTGTTTAATACGG-C-ATGTAAAGTTA-AGCNG-ACGAT-AGGGAGATGTTATTGGGCCT--TTTA-CCAACTTAGATCTCGCCA-G-AAACTGGTAGACAAAGAGGAGAAATC-TATAAAAACAAGCCGTGAACCGAG----GGTCCCCC-----AGAAATCCAAGATGGC-GAGTGTCGTCCCTTTACTTTTTTT-AATGTACATATGAT-ACACC-TTTTTT-----AA-AA-------C-GACGA-AANAT---GCGG-ATTTTGGTGG-TGGATTTT-AT-T-TA-TATTA-TTTAGGGGT-GGGTTTTAT-TTACATAA-TTTA-TTATTCGGGAGCAAATAATACNATA-G--TTCA-TT-A--TCTG---AC--AACC--GAGCCCCTGT
Reference ( family-6859 ) : TGGAGGGTATTGCGTCA--CTCAAATGT-AGAC-----TTCCGTTGCTT-TCGACGAGTTGGGG-CAG-G-TGT-CGAGG-ACGTTTCGGATCA-C-TGAGTGTTTAATACGG-C-ATGTAAAGTTA-AGCNG-ACGAT-AGGGAGATGTTATTGGGCCT--TTTA-CCAACTTAGATCTCGCCA-G-AAACTGGTAGACAAAGAGGAGAAATC-TATAAAAACAAGCCGTGAACCGAG----GGTCCCCC-----AGAAATCCAAGATGGC-GAGTGTCGTCCCTTTACTTTTTTT-AATGTACATATGAT-ACACC-TTTTTT-----AA-AA-------C-GACGA-AANAT---GCGG-ATTTTGGTGG-TGGATTTT-AT-T-TA-TATTA-TTTAGGGGT-GGGTTTTAT-TTACATAA-TTTA-TTATTCGGGAGCAAATAATACNATA-G--TTCA-TT-A--TCTG---AC--AACC--GAGCCCCTGT
gi|1 : TGGAGGGTATTG-GTCA--CTCAATTGTTAGACCTTTCTTCCGT-GCTTGTCGATGAGTTGGGGTCAG-GGTGTTCGAGG-G-ATTTCGGATCAACATGAGTGTTTAATACGG-CCATGTAAAGTTATAGCTGCACGAT-AGGGAAGAATTTTTGGGCCT--TTTAACCAACTTAGAT-TCGCCAAG-AAACTGGTAGA--AAGAGGAGAAATC-TATAACACGAAGCTGTGAAACCAG----GGTCCCAC-----AG-AATCC-AGATGGCGGAGTGTCGTCCCTTTACTTTTTTTAAATGTACATATGGTAACACC-TTTTTT------A-AA-------C-GACG--AATAT---GC-C-ATTTTGGTGG-TGA--TTT-AT-TATA-TAATA-TTTAGGGGTGGGGTTTTAT-TTAC-TAA-TTTATTTATTTGGGAGCAAATAATACTATACGTTTTCA-TT-AATCCTGAACAC--AACC--GAGCCCCTG
gi|10 : aTATATA-GAT-ACATC-CTTTTT-----AAGAA-------CAGACGAGAATATTGCGTGG-ATTTTGGTGG-TGTATTTTTAT-T-TAACATTA-TTC-GCGGT-GGGTTTTAT-T-ACATAAATTTA-TTATTTGGGAGCAAATAATAC-ATG-G--TT
gi|11 : GTACATATGAT-ACACC-TTTT-------AA-AA-------C-GACGA-AATAT---GCGG-ATTTTGGTCG-TTGATTTT-TT-A-TA-TATTA-TTTA-GGGT--GGTTTAAT-TAACATAA-TTTA-TTATTTGGGAGCAAATAATACAATA-G--TTTA-TT-A--TCTat
gi|12 : CGCCA--TTCAA-TGT-AAAC-----TTCCGTTGCTT-TCAATGAGTTGGGG-CAG-G-TGT-CGAGG-ACGTTTCGGATCA-C-TGAGTGTTTAATATGG-C-ATGTAAAGTTA-AGCAG-ACGAG-AGGGAGATGca
gi|13 : gacactGT-GGGTTTTAT-TTACATAA-TTTA-TTGTTCGGGAGCAAATAATACCATA-G--TTCA-TT-A--CCTG---AC--AACC--GAGCCCTT
gi|14 : TAGGGGT-GGGTTTTCT-TTACATAA-T----TTATCC-----------ATACAATA-G--TTCA-TT-A--TCTG---ACTTGACC--GAGCCCCTGT
gi|15 : -TTATATAA-TTTA-TTATTCGAAAGCAAATAATACAATA-C--TTCA-TT-A--TCTG---AC--AACC--GATTCCCTGgg
gi|16 : taGAGCAAATAA-ATT-TA-G--TTCA-TT-A--TCTG---AC--AACC--G-GCC
gi|17 : ttcCCCA-----AGAAATCCAAGATGGT-GAGTGTCGTCCCTTTACt
gi|2 : TGGACGGTATTGCGTCA--CTCAAACGT-AAAC-----TTC-GTTGCTT-TCGACAAGTTAGGA-CAGAG-TAC-GGATGTACGTT--GGATCA-C-TGCGTGTTTAGTATGGGC-ATGTAGAATTA--GCAG-ACGATGAGGGAGATGTCATTAGGTCTCTTTTC-CCAATTTAGA-CTCGCCA-GTAAACTGGTAGACAAAGAGGAGAAATTGTTTGAAAACAAGCCGTGAACCGAGCCCCCCTCCCCCTCCCAAGAAATCCAAGTGGGT-GAGTGTCGTCCCTTTAC-----AC-AATAT-----TGAT-ACACCTTTTTTT-----GA-AA-------A-GACTA-AAAAT---GCGG-ATTTTGGTGG-TGGA-TTT-ATAT-TA-TATTATTTTAGAGGT-GGGTTCTGTGTTAC-TAA--TTA-TTATTCGGGAGCAAGTAATACCATA-G--TTCA-TTAA--TCTG---AC--AACCGAGAGCCCCTGTa
gi|3 : TGGAGGGTATTGCGTCAACTTCAAATGT-AGAC-----TTCCGTTGCTT-TCGATGAGTTGGGG-CAG-G-TGT-CGAGG-ATGTTTCGGATCA-C-TGAGTGTTTAATACGG-C-ATGTAAAGTTA-AGCTG-ACGAT-AGGGAGATGTTATTGGGCCT--TTTA-CCAACTTAGATCTCGCCA-G-AAACTGGTAGACAAAGAGGAGAAATC-TATAAAAACAAGCTGTGAACCGAG----GGTCCCCC-----AGAAATCCAAGATGGC-GAGTGTCGTCCCTTTACTTTTTTT-AATGTACATATGGT-ACACC-TTTTTT-----AA-AA-------C-GACGA-AATAT---GCGG-ATTTTGGTGG-TGGATTTT-AT-T-TA-TATTA-TTTAGGGGT-GGGTTTTA--TTACATAA-TTTA-TTATTT-GGAGCAAATAATAACATA-T--TTCAGTT-A--TC-G-------AACC--GAGCCCCTGT
gi|4 : -AATGTACAAATGAT-ACAC----TTTT-----AA-AAAAAACAAC-AACGA-AATAT---GCGG-ATTTTGGTGG-TGGATTTT-AT-T-TA-TATCA-TT-AGGGGT-GGGTTTAAT-TTACATAA-TTTA-TTGTTCGGGAGCAAATAATATAATC-G--TTAA-TT-A--TCTG---AC--AACC--GAGCCCCTGT
gi|5 : TGTATATATGAT-ACACC-TTTTTT-----TA-AA-------C-GATGA-AAAAG---GCGG-ATTTTGGTGG-TGGATTTT-AT-T-TA-TATTA-TTTAGGGGT-GGGCTTTAT-TTACCTAG-TATT-TTATTCAGAAGCAAATGATGCAATA-G--TTCA-TT-A--TCCG---AC--AACT--GAGCCCCTGT
gi|6 : CATATGAT-ACACC-TTTTAT-----AA-AA-------C-GACGA-AAAAT---GCGG-ATTTTGGTGG-TGGATTTT-AT-T-TA-TATAA-TTTAGGGGT-GGGTTTTAT-TTACATAA-TTTG-TTATTCGGGAGCAAATAATACAATT-G--TTCG-CT-A--TCTG---AC--AACC--GAGCCCCTG
gi|7 : -ACACC-TTTTTTTAAATAA-AG-------C-GACGA-AAAAT---GCGG-ATTT-GGAGG-TGGATTTT-AT-T-CA-TATTA-TTTAGGAGT-GGGTTTTAT-TTACATAA-TTTA-TCACTCGAGATTAAATAATATC-TA-G--TTCA-TT-G--TCTG---AC--TACC--GAGTTCC
gi|8 : cTATGAT-ACACC-TTTTTT-----GA-AA-------A-GACTA-AAAAT---GCGG-ATTTTGGTGG-TGGAATTT-AT-T-TA-TATTA-TTTAGAGGT-GGGTTCTGT-TTACTTAA--TTA-TTATTCGGGAGCAAGTAATACCATA-G--TTCA-TT-A--TCTG---AC--AACC--GAGCCC
gi|9 : TATGAT-AACCC-TTTTTT-----TA-AA-------C-GA-GA-AATAT---GCGGGATTTTG-TGGCTGGATTTC-AT-T-TA-TATTA-TTTAAGGGT-GGGGTTTA---TACATAA--TTA-TAATTT-GGAGC-AATAATA-AATA-G--TTCA-TT-A--TCTG---AC--AACC--GAGCCTC
blockSeqs : C AC A . . C T . T . A . . TAC T . . G . A A . G CT . TC GT C G CCCC TCCCA A A . T . . T TAAATA G AAAACAA A G T TGC G C T A . A T . G A AT . G A . . G A . . TT GA
blockSeqs : C . A . . C T . C . . . . AC T . . . . A A . . . . C G C . . . A A . . . . . A . . . . T . . . . . . . . . . A T . G C . . . . . . . .
blockSeqs : C . . . . . T . T . . . . AT . . . . . . T . . . A A . . . . A . . . . A . . . . . . . . . . A T . G A . . . . . . . .
blockSeqs : . . G . . . . T . . . . . . . . . . A T . G A . . . . . . . .
blockSeqs : . . A . . . . T . . . . . . . . . . A T . G T . . . . . . . .
blockSeqs : . . A . . . . A . . . . . . . . . . A T . G C . . . . . . . .
blockSeqs : . . T . . . . A . . . . . . . . . . A T . A C . . . . . . . .
blockSeqs : . . A . . . . A . . . . . . . . . . C T . G A . . . . . . . .
blockSeqs : . . G . . . . A . . . . . . . . . . A T . G A . . . . . . . .
blockSeqs : . . T . . . . T . . . . . . . . . . A T . G A . . . . . . . .
blockSeqs : . . T . . . C . . . . . . . .
blockSeqs : . . A . . . C . . . . . . . .
blockSeqs : . . . . . A . . . . .
blockSeqs : . . .
blockSeqCons : A***** ** ** ***
originalCons : TGGAGGGTATTGCGTCA--CTCAAATGT-AGAC-----TTCCGTTGCTT-TCGACGAGTTGGGG-CAG-G-TGT-CGAGG-ACGTTTCGGATCA-C-TGAGTGTTTAATACGG-C-ATGTAAAGTTA-AGCNG-ACGAT-AGGGAGATGTTATTGGGCCT--TTTA-CCAACTTAGATCTCGCCA-G-AAACTGGTAGACAAAGAGGAGAAATC-TATAAAAACAAGCCGTGAACCGAG----GGTCCCCC-----AGAAATCCAAGATGGC-GAGTGTCGTCCCTTTACTTTTTTT-AATGTACATATGAT-ACACC-TTTTTT-----AA-AA-------C-GACGA-AANAT---GCGG-ATTTTGGTGG-TGGATTTT-AT-T-TA-TATTA-TTTAGGGGT-GGGTTTTAT-TTACATAA-TTTA-TTATTCGGGAGCAAATAATACNATA-G--TTCA-TT-A--TCTG---AC--AACC--GAGCCCCTGT
finalCons : TGGAGGGTATTGCGTCA--CTCAAATGT-AGAC-----TTCCGTTGCTT-TCGACGAGTTGGGG-CAG-G-TGT-CGAGG-ACGTTTCGGATCA-C-TGAGTGTTTAATACGG-C-ATGTAAAGTTA-AGCNG-ACGAT-AGGGAGATGTTATTGGGCCT--TTTA-CCAACTTAGATCTCGCCA-G-AAACTGGTAGACAAAGAGGAGAAATC-TATAAAAACAAGCCGTGAACCGAG----GGTCCCCC-----AGAAATCCAAGATGGC-GAGTGTCGTCCCTTTACTTTTTTT-AATGTACATATGAT-ACACC-TTTTTTA-----A-AA-------C-GACGA-AANAT---GCGG-ATTTTGGTGG-TGGATTTT-AT-T-TA-TATTA-TTTAGGGGT-GGGTTTTAT-TTACATAA-TTTA-TTATTCGGGAGCAAATAATACNATA-G--TTCA-TT-A--TCTG---AC--AACC--GAGCCCCTGT
Alignments
lowQualScore : 11 1 22222 1 1 1 1 1 111 1 1 1 1 11 1 1 11 1 11 111 1 2222 22222 1 1 111111 1111111
lowQualScore : 2 33 9 0 55555 2 3 0 2 0 0 0 0 111 3 0 0 0 0 33 1 0 0 88 3 44 666 6 3 0 8888 55555 3 3 0 7 0 3 3 222222 3 1111111 3 3 1 666 3 3 3 3 3 3 3 3 2 1 44 2 1 3 2 33 2 2 33 555 44 44
lowQualScore : . .. . . ..... . . . . . . . . ... . . . . . .. . . . .. . .. ... . . . .... ..... . . . . . . . ...... . ....... . . . ... . . . . . . . . . . .. . . . . .. . . .. ... .. ..
lowQualScore : 5 88 8 0 00000 5 2 0 0 0 0 0 0 222 2 0 0 0 0 22 0 0 0 33 3 00 777 7 3 7 3333 00000 2 2 0 3 0 6 6 000000 6 8888888 6 6 0 444 6 6 6 6 6 6 6 1 9 6 44 9 9 6 7 77 9 9 99 444 22 22
consensus : TGGAGGGTATTGCGTCA--CTCAAATGT-AGAC-----TTCCGTTGCTT-TCGACGAGTTGGGG-CAG-G-TGT-CGAGG-ACGTTTCGGATCA-C-TGAGTGTTTAATACGG-C-ATGTAAAGTTA-AGCNG-ACGAT-AGGGAGATGTTATTGGGCCT--TTTA-CCAACTTAGATCTCGCCA-G-AAACTGGTAGACAAAGAGGAGAAATC-TATAAAAACAAGCCGTGAACCGAG----GGTCCCCC-----AGAAATCCAAGATGGC-GAGTGTCGTCCCTTTACTTTTTTT-AATGTACATATGAT-ACACC-TTTTTT-----AA-AA-------C-GACGA-AANAT---GCGG-ATTTTGGTGG-TGGATTTT-AT-T-TA-TATTA-TTTAGGGGT-GGGTTTTAT-TTACATAA-TTTA-TTATTCGGGAGCAAATAATACNATA-G--TTCA-TT-A--TCTG---AC--AACC--GAGCCCCTGT
Reference ( family-6859 ) : TGGAGGGTATTGCGTCA--CTCAAATGT-AGAC-----TTCCGTTGCTT-TCGACGAGTTGGGG-CAG-G-TGT-CGAGG-ACGTTTCGGATCA-C-TGAGTGTTTAATACGG-C-ATGTAAAGTTA-AGCNG-ACGAT-AGGGAGATGTTATTGGGCCT--TTTA-CCAACTTAGATCTCGCCA-G-AAACTGGTAGACAAAGAGGAGAAATC-TATAAAAACAAGCCGTGAACCGAG----GGTCCCCC-----AGAAATCCAAGATGGC-GAGTGTCGTCCCTTTACTTTTTTT-AATGTACATATGAT-ACACC-TTTTTT-----AA-AA-------C-GACGA-AANAT---GCGG-ATTTTGGTGG-TGGATTTT-AT-T-TA-TATTA-TTTAGGGGT-GGGTTTTAT-TTACATAA-TTTA-TTATTCGGGAGCAAATAATACNATA-G--TTCA-TT-A--TCTG---AC--AACC--GAGCCCCTGT
gi|1 : TGGAGGGTATTG-GTCA--CTCAATTGTTAGACCTTTCTTCCGT-GCTTGTCGATGAGTTGGGGTCAG-GGTGTTCGAGG-G-ATTTCGGATCAACATGAGTGTTTAATACGG-CCATGTAAAGTTATAGCTGCACGAT-AGGGAAGAATTTTTGGGCCT--TTTAACCAACTTAGAT-TCGCCAAG-AAACTGGTAGA--AAGAGGAGAAATC-TATAACACGAAGCTGTGAAACCAG----GGTCCCAC-----AG-AATCC-AGATGGCGGAGTGTCGTCCCTTTACTTTTTTTAAATGTACATATGGTAACACC-TTTTTT------A-AA-------C-GACG--AATAT---GC-C-ATTTTGGTGG-TGA--TTT-AT-TATA-TAATA-TTTAGGGGTGGGGTTTTAT-TTAC-TAA-TTTATTTATTTGGGAGCAAATAATACTATACGTTTTCA-TT-AATCCTGAACAC--AACC--GAGCCCCTG
gi|10 : aTATATA-GAT-ACATC-CTTTTT-----AAGAA-------CAGACGAGAATATTGCGTGG-ATTTTGGTGG-TGTATTTTTAT-T-TAACATTA-TTC-GCGGT-GGGTTTTAT-T-ACATAAATTTA-TTATTTGGGAGCAAATAATAC-ATG-G--TT
gi|11 : GTACATATGAT-ACACC-TTTT-------AA-AA-------C-GACGA-AATAT---GCGG-ATTTTGGTCG-TTGATTTT-TT-A-TA-TATTA-TTTA-GGGT--GGTTTAAT-TAACATAA-TTTA-TTATTTGGGAGCAAATAATACAATA-G--TTTA-TT-A--TCTat
gi|12 : CGCCA--TTCAA-TGT-AAAC-----TTCCGTTGCTT-TCAATGAGTTGGGG-CAG-G-TGT-CGAGG-ACGTTTCGGATCA-C-TGAGTGTTTAATATGG-C-ATGTAAAGTTA-AGCAG-ACGAG-AGGGAGATGca
gi|13 : gacactGT-GGGTTTTAT-TTACATAA-TTTA-TTGTTCGGGAGCAAATAATACCATA-G--TTCA-TT-A--CCTG---AC--AACC--GAGCCCTT
gi|14 : TAGGGGT-GGGTTTTCT-TTACATAA-T----TTATCC-----------ATACAATA-G--TTCA-TT-A--TCTG---ACTTGACC--GAGCCCCTGT
gi|15 : -TTATATAA-TTTA-TTATTCGAAAGCAAATAATACAATA-C--TTCA-TT-A--TCTG---AC--AACC--GATTCCCTGgg
gi|16 : taGAGCAAATAA-ATT-TA-G--TTCA-TT-A--TCTG---AC--AACC--G-GCC
gi|17 : ttcCCCA-----AGAAATCCAAGATGGT-GAGTGTCGTCCCTTTACt
gi|2 : TGGACGGTATTGCGTCA--CTCAAACGT-AAAC-----TTC-GTTGCTT-TCGACAAGTTAGGA-CAGAG-TAC-GGATGTACGTT--GGATCA-C-TGCGTGTTTAGTATGGGC-ATGTAGAATTA--GCAG-ACGATGAGGGAGATGTCATTAGGTCTCTTTTC-CCAATTTAGA-CTCGCCA-GTAAACTGGTAGACAAAGAGGAGAAATTGTTTGAAAACAAGCCGTGAACCGAGCCCCCCTCCCCCTCCCAAGAAATCCAAGTGGGT-GAGTGTCGTCCCTTTAC-----AC-AATAT-----TGAT-ACACCTTTTTTT-----GA-AA-------A-GACTA-AAAAT---GCGG-ATTTTGGTGG-TGGA-TTT-ATAT-TA-TATTATTTTAGAGGT-GGGTTCTGTGTTAC-TAA--TTA-TTATTCGGGAGCAAGTAATACCATA-G--TTCA-TTAA--TCTG---AC--AACCGAGAGCCCCTGTa
gi|3 : TGGAGGGTATTGCGTCAACTTCAAATGT-AGAC-----TTCCGTTGCTT-TCGATGAGTTGGGG-CAG-G-TGT-CGAGG-ATGTTTCGGATCA-C-TGAGTGTTTAATACGG-C-ATGTAAAGTTA-AGCTG-ACGAT-AGGGAGATGTTATTGGGCCT--TTTA-CCAACTTAGATCTCGCCA-G-AAACTGGTAGACAAAGAGGAGAAATC-TATAAAAACAAGCTGTGAACCGAG----GGTCCCCC-----AGAAATCCAAGATGGC-GAGTGTCGTCCCTTTACTTTTTTT-AATGTACATATGGT-ACACC-TTTTTT-----AA-AA-------C-GACGA-AATAT---GCGG-ATTTTGGTGG-TGGATTTT-AT-T-TA-TATTA-TTTAGGGGT-GGGTTTTA--TTACATAA-TTTA-TTATTT-GGAGCAAATAATAACATA-T--TTCAGTT-A--TC-G-------AACC--GAGCCCCTGT
gi|4 : -AATGTACAAATGAT-ACAC----TTTT-----AA-AAAAAACAAC-AACGA-AATAT---GCGG-ATTTTGGTGG-TGGATTTT-AT-T-TA-TATCA-TT-AGGGGT-GGGTTTAAT-TTACATAA-TTTA-TTGTTCGGGAGCAAATAATATAATC-G--TTAA-TT-A--TCTG---AC--AACC--GAGCCCCTGT
gi|5 : TGTATATATGAT-ACACC-TTTTTT-----TA-AA-------C-GATGA-AAAAG---GCGG-ATTTTGGTGG-TGGATTTT-AT-T-TA-TATTA-TTTAGGGGT-GGGCTTTAT-TTACCTAG-TATT-TTATTCAGAAGCAAATGATGCAATA-G--TTCA-TT-A--TCCG---AC--AACT--GAGCCCCTGT
gi|6 : CATATGAT-ACACC-TTTTAT-----AA-AA-------C-GACGA-AAAAT---GCGG-ATTTTGGTGG-TGGATTTT-AT-T-TA-TATAA-TTTAGGGGT-GGGTTTTAT-TTACATAA-TTTG-TTATTCGGGAGCAAATAATACAATT-G--TTCG-CT-A--TCTG---AC--AACC--GAGCCCCTG
gi|7 : -ACACC-TTTTTTTAAATAA-AG-------C-GACGA-AAAAT---GCGG-ATTT-GGAGG-TGGATTTT-AT-T-CA-TATTA-TTTAGGAGT-GGGTTTTAT-TTACATAA-TTTA-TCACTCGAGATTAAATAATATC-TA-G--TTCA-TT-G--TCTG---AC--TACC--GAGTTCC
gi|8 : cTATGAT-ACACC-TTTTTT-----GA-AA-------A-GACTA-AAAAT---GCGG-ATTTTGGTGG-TGGAATTT-AT-T-TA-TATTA-TTTAGAGGT-GGGTTCTGT-TTACTTAA--TTA-TTATTCGGGAGCAAGTAATACCATA-G--TTCA-TT-A--TCTG---AC--AACC--GAGCCC
gi|9 : TATGAT-AACCC-TTTTTT-----TA-AA-------C-GA-GA-AATAT---GCGGGATTTTG-TGGCTGGATTTC-AT-T-TA-TATTA-TTTAAGGGT-GGGGTTTA---TACATAA--TTA-TAATTT-GGAGC-AATAATA-AATA-G--TTCA-TT-A--TCTG---AC--AACC--GAGCCTC