lowQualScore : 11111111111111111111111111111 111111111 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 111 5555 4 444444444444 3 4444444 55555555555555555555555555555555555555555555555555555 7777777777777777777 111 33 1 111 11 1 1 1 222222222 2 111 66666666666666666666666666666 2 2222 111 1 1 1 1 1 888888888888888888888888888 1 3333 44444444 11 222 2 55555555555 1 7777777777777 11 33 2 444444444 1 222222 77777777777 1 22 3333 4 1 1 2222222 1 222222 44 4444444 1 22 1 1 2222 22222 1 22 9999999999999 222 11 333333 1 22 1 2222222222 88888888888888888888888888888 22222 222 111 22222 111 11 11 22 333333333 333 4444444444444444 22 777 11 1111111 11111 2 1111 2222 11 22222222222 333333 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 1111 3 22 111 1
lowQualScore : 777 6666 0 111111111111 1 3 7777777 6 99 44444444444444444444444444444444444444444444444444444 8 8 8 8 0 1 6 1111111111111111111 111 0 11 0 3 5 8 444 11 0 0 2 0 666666666 6 666 0 22222222222222222222222222222 0 4444 0 777 0 0 0 0 0 444444444444444444444444444 3 0000 00000000 88 333 4 7 3 44444444444 5 6 5555555555555 00 55 7 4 555555555 5 6 666666 88888888888 5 22 3333 0 3 7 3 0000000 5 888888 77 3333333 6 3 33 0 0 0000 55555 0 33 2 9999999999999 666 2 33 3 2 888888 0 8 6 8 11 5 1 9 6 5 1 5555555555 3 8 8 44444444444444444444444444444 8 33333 999 777 66666 6 8 6 444 11 8 8 00 33 8 8 333333333 000 8 7777777777777777 8 11 4 000 11 0 8 5555555 33333 4 2 7777 6 6 2222 6 77 77 44444444444 77 5 333333 77 333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 5555 77 5 44 444 3
lowQualScore : ... .... . ............ . . ....... . .. ..................................................... . . . . . . . ................... ... . .. . . . . ... .. . . . . ......... . ... . ............................. . .... . ... . . . . . ........................... . .... ........ .. ... . . . ........... . . ............. .. .. . . ......... . . ...... ........... . .. .... . . . . ....... . ...... .. ....... . . .. . . .... ..... . .. . ............. ... . .. . . ...... . . . . .. . . . . . . .......... . . . ............................. . ..... ... ... ..... . . . ... .. . . .. .. . . ......... ... . ................ . .. . ... .. . . ....... ..... . . .... . . .... . .. .. ........... .. . ...... .. .............................................................................................................................................................................. .... .. . .. ... .
lowQualScore : 000 0000 0 111111111111 8 5 7777777 7 22 22222222222222222222222222222222222222222222222222222 0 0 0 0 8 0 0 4444444444444444444 777 8 00 2 2 0 0 000 00 0 0 5 0 222222222 7 777 7 77777777777777777777777777777 0 8888 2 555 0 0 0 0 0 000000000000000000000000000 3 7777 33333333 33 333 7 3 7 00000000000 0 0 5555555555555 00 55 5 0 000000000 5 0 555555 00000000000 0 55 5555 0 3 3 3 7777777 0 333333 00 3333333 7 3 88 0 0 0000 55555 0 88 5 5555555555555 222 0 22 2 0 222222 0 0 0 0 44 6 0 8 7 8 0 0000000000 0 0 0 66666666666666666666666666666 0 22222 222 666 22222 0 0 0 000 00 0 0 88 22 0 0 000000000 000 0 2222222222222222 0 44 0 444 00 8 0 8888888 22222 0 8 0000 7 7 7777 7 77 00 88888888888 99 7 888888 22 999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 3333 99 8 66 111 3
consensus : CGAGGGCGGTAGGCCC--GAGATGA-GTTCTTTCT-CT-CAGAACAGAAT-GGACAGTTT--N-NGG-CCTTTCT--CCTAC-------TCT-AAAGA-CA-TGA-TTTTC-CTTTTT--TGGGATGGA---T-TCAAATA-A-AGAT-GTATT-GTATTCAGAATGAATTGTT-------TCA---------TGCA---ATAGTAAAA-TCTTTGTTCACAG-AA---TAG--ACAGTC-ACAGGTAAG-TTAAGG-GTGC----T-CTGGCATTTTGTTTAAT-G-CTATTGTTTT--------------AGAA-GATG-CT---ACACATTACAA--AAGCATGGAAG---C-TT-ACA-GGTGG-GC-TT-G-----T--CA-GNTAT-ACATA---TACA-AGT---GTGTGATGTTTCTG-AA-TCA-GTTG--AAAGTTCG---CCNTTGTAA-GATAAGC-ATGTCTTCCTCTTATGGAGAAAAGCGNNCTAAGTATCNTAACTTTGGTCCAAANTTCAAAGAAACGNGNATATGCGCAAAAATACTGATGTGTTATAACTTAGNGT--GCACTTTGGATCTAACGAATGGAAAATGANTGAAACACAAAAT-AAGGA-AAATTTTTTAC-GTG--AA-GATGGGTTCATTTT-CG-ACATTTTT--GAATGAGGAACTT-------ACGAATGC-TAGTCAGGATATTGAAAAA-TA-TTGA-GCA---CTTTTTTAAA---CCA-TTGAATCA--GGGGAATTAAACAAGTTACTGAG--GAAAGGACTAAC--AAAAAAAA-CAAGGAAAGACAA-GGGTTGG-CTA-TGCCATTGTTTA-AAGATTTGGTAGCAAAACAGGAAA-AAAACATATTGGGCNA--AAA-ATTCA-TTTGG-ATTTAC----------------------ATCAACAAG-AAG---ATATTTTGAAAATGAGGCGAT--TA-TTCATGGGAATGT-TAAATGAA---GTGACACA--AAAT-GCAGAG-CAAGAGAA-AAAAAT-GAAAA-G-TAC--C-A---GGGACTGG---AA-TAC-------CACTAGTGAAATTAAAATC-AAATCTGGCAATGGTTCTTTNGGAGTTCAA--GTTTTGAAGATACG--TAAATTAAATGTTGCA-TTT--CA---TG--TATTTGTTGTTTTCC----CCCTTGGGTACA-TTCC-AA--TCTTTA-CCTG-GCACTGTCC-ATT-CT--NTTTG--T-TGT-AA--ACTGT-CCATT---------------CCT--G-----ATTGA-----AAAAAAAAANCT-GT-CCATTC---TT--TAAAAGAAT-GGACAG-----TTC-TTCAANAAGAAT----GG-ACAGG---T-TTTTTCAATCAGAA--AGACACTT-ACAGGTAACTTAATGG--A---T--ATG-AGTTAGCAACAACAATA--ACCTATAGAATGG-ACAATTCAAACAAAAGGNTTACGTCAC-AATCATG
Reference ( gi|2 ) : CGAGGTCTGTAGGCT---GAGATGACGTTCTTT-T-CT-CAGAACAGAATTGGACAATT---A-AAG-CCTTTCT--CCTAC-------T-T-AAA---CA-TTA-TTTTCTTTTTTT--TGGGATGGA---T-TCAAATA-A-AGAT-GTATT-GTATTCAGAATGAATTGTT-------TC----------TGCA---ATAGTAAAATTCTTTGTGCACAG-AA---TAG--ACAGTC-ACAGGTAAG-TTAAGG-GTGC----T-CTGGCATTTTGTTT-AT-G-CTATTGTTCTATAAAAAAA---AAAGAA-GATG-CT---ACAC-TTAC-A--AAGCATGGAAG---C-TT-ACA-GGTGG-GC-TT-G-----T--CA-ATTAT-ATATA---TACA-AGT---GTGTGATGTTTCTG-A--TCAAGTTG--AAAGTTCG---CCTTTGTAAAGATAAGCCATGTAATC-TCTTATGTAAAAA--CGTTTT-----TTTCAACTT-GGTCGAAAATTTAAAGAA---------TGCGCAAAAATACTAATG-GT-ATA-CTTAAAGTTGACACTTTGGATCTA-GAAATGGAAAAT-AG-GAAACACAAAATCAAGGA-AAATTTTTTAC-GTG--AA-GTTGTGTTCATTTTTCG-ACATTTTTTTGAATGAGGAACTT-------ACGAATGC-TAGTCAGGATATTGAAAA--TA-TTGA-GCA---CTTTTTTATA---CCA-TTGAATCA--GAGGAATTAAACAAGTT--TGAAAGAAAAGGACTAAC--AAGAAAAA-CAAGGAAAGGCAA-CAGTTGG-CTA-TGTCATTGTTTA-AAGATTTGGTAGCAAAACAGAAAA-AAAACATATTGGGGAA--AAA-ATTTA-TTTGG-ATTT-C----------------------ATCAACAAG-A-G---ATATTTCGCAAATGAAGCGAT--TAATTCATGGAAATGT-TAGATGAA---GTGACACA--AAAT-GCAGAG-CAAGAGAA-GAAAGT-TAAAA-G-TA---C-A---GGGACTGG---AA-TAC-------CAC-AGTG-AATTAAAATC-AAATCTGGCAAT-TTTCTTTTGGAGTTCAATTTTTTTGAAGATATG--TAAATTAAATGTTGCA-TTT--CA---TG--TATTTGTT-TTTCCC----CCCTTGGGTACA-TTCC-AA--T-TTTA-CCTG-ACACCGTCTAATG-CT--CTTTG--T-TGTAAA--ACTGT-TCATT---------------CCT--G-----ATTGA-----AAAAAAAAAACT-CT-CCATTC---TT--TAAAAGCAT-GAACAG-----TTC-TTCATAAAGAAT----GG-ACAAG---T-TTTTTCAAGAAGAA--AGACACTTAACAGGTAATTTAATGA--A--GTTTGTG-AGTTAGCAACGACAATA--ACCTATAGAATGGAACAATTCAAA-AAAATATTTACGTCAC-AATCATG
gi|1 : CGAGGGCGGTATGTCCACGAGATGA-GTTCTTTCT-CTTCA--ACAGACGTGGACAGTTTATACAGG-CCTTTCTGCCCTAT-------TCT-AAGGAGCAATGA-TTTTCCCCTTTTGGTAGGATGGGATTT-TCAGATA-ATGGATTGTATTTGAATTCAGATAGAATTGTTCAGGTCGTCATACA-----TGCA---AAAGTAAAAATATT-GTTTACAG-AAGAATAAGAACAGTCCACATAAAAG-TTAAGGCGTGTAAATTGCTGGCATTTTGTTA-AT-GGCTATTGTTTT-TATAAGGATCTCACGTG-GATGGCTCACACAT-CTAC-A--AAGCAGCGAAGAAACGTT-ACAAGGTGGCGC-TTTG-----TTTCAGACTAT----TA---TACAGAGTAAGGTGTGATGTTTTTG-AA-TCA-GTTGCTAAAGTTCGAACTCCTTGTAA-GATAAGCAA-GTCTTCCTCTTATGGAGAAAAGCGTACTAAGTATTATAACT--GGTC-AAAATTTAAAGAAACCTGAATATGCGCAAAA-TACTGATGTGTTATA-T---AAGT--GCACTTTGGATCTAAGAAATGGAAAAT-AGTGAAACACAAAAT-AAGGACAAATTTTTTAC-GTAGAAA-GATGGGTTCATTTT-CG-ACATTTTTT-GAATGAGGTACTTTACATGTACGAATGCCTAGTCAGGATATTGAAAAATTAATTGA-GCA-----TTTTTAAAAAGCCAATTGAATCA--AGAGAATTAAGCAAGTTACTGAGA---AAGGACTAACCAAAAGAAAA-CA-GGAAAGGCAA--AGGTGA-CTA-TGCCATTGTTTA-AAG--TTGGTAG-AAAACAGGATA-AAA-CATATTGGGCCA--AAA--TTCA-TTTGG-ATTT-TTTTTTTTTTTTTTTTTTTTTTTACCATCACA-A-G---ATATTTTGAAAATGAGGCGAT--TA-TTCATGGGAATGT-TAAATGAA---GTGACACA--AAAT-GCAGAA-CAAGAGGA-AAAAGTGGAAAA-G-TAACGC-AGCTGGGACTGA---AA-TACATGTATGCACTAGTGAAATTAAAATT-CAATCTGGCAATGTTTCTTTTGGAGTTCAG---TTTTGAAGATACGTTTAAATTAAATGTTGCA-TTTCCCA---TG--TATTTGTTGTTTTCC----TCCTTGGGTACA-TTCC-AATTT-TTTA-CCTG-GCA-TGTCCATTGTCTTGTTTTGTTT-TGT-----CCTG--TCATT----------------CT--G-----ATTG------AAAAAAAAACCTGTT-CCATTC----T--TAAAAGAAT-GGAAAG-----TTCTTTCAAAAAGAAT----GG-ACAGT---T-TCTCTTCAGAAGAAT-AGTCACTT-ACAGGTAAATTAATGGGCA--GTTTGTG-AGTTAGCAAC--CAAT---ACCTATAGAATGG-ACAATTCAAACCAAAGGGTTACGTCACAAATCATG
gi|7 : gtaaaggagaaaggccgaaaaactgtctcactctgtgggaggaaaaagaactgtCGAGGGCGGTAGGCCC--GAGATGA-GTTCTTT---CT-CAGA-CAGAAT-GGACAATTT--A-AAG-CCTTTCT--CCTAC-------T-TAAAA---CA-TTA-TTTTC-CTTTTT--TGGGATGGA---T-TCAAATA-A-AGAT-GTATT-GTATTCAGAATGAATTGTT-------TC----------TGCA---ATAGTAAAA-TCTTTGTGCACAG-AA---TAG--ACAGTC-ACAGGTAAG-TTAAGG-GTGC----T-CT-GCATTTTGTTTAATGG-CTATTGTTCT--------------AGAA-GATG-CT---ACACATTACAA--AAGCATGGAAG---C-TT-ACA-GGTGG-GCTTT-G-----T--C---TTAT-ATATA---TACA-AGT---GTGTGATGTTTCTGAA--TC-AGTTG--AAAGTTCG---CCATTGT-AAGATAAG-CATGTtttttaaatgtacgctatgaagaatgtgt
gi|8 : ggagaaaggccgaaaactgtccattctgtgagagaaagaactgatCGAGGGCCGTAGGCCC--GAGATGA-GTTCTTT-TTCT-TA---CAGAAT-GGACAGTTT--A-AGG-CCTTTCT--CCTACATTGTACT-T-AAAA--CA-TAAATTTTCATTATTG--TGGGA-AGA---TGTCAAACA-A-AGAT-GGATT-GTA-TCAGAATTAATTGTT-------CCAGGGTAGCAATACATGCATAGTAAA--TTATTGTTTACAGTAA---TAG--ACAGTC-ATAGGTAAG-TTAGGG-GTGC----T-CCCGCATTTGGTTTAAT-G-GTATTGTCTT--------------AGAACTAT--CT---ACACATTACAA--AAGCATGGAAA---C-TTAACA-GGTGG-GC-TT-
gi|7 : atgtaaaggagaaaggccgaaaactgtccattgaactgatGTTCTTTCT-CT-CA---CAGAAT-GGACAGTT---TTCGG-CCTTTCT--CCttgtc
gi|10 : AGAA-AGAAT-GGACAGTT---T-GTGATCTTTCT--CCTAC-------T-T-AAAA--CA-TGA-TTTC---TCTTT--TG--------------AAATA-A-AGAT-GTATT-GTATTCAGAATG-ATTTTT-------TT----------TACA---ATtgatcgagggcggtaggcccgagatgagttctttctcagacagaatggacaatttaaagcctttctcctacttaaaacattattttccttttttgggatggattcaaataaagatgtattgtattcagaatgaattgtttctgcaatagtaaaatctttgtgcacagaatagacagtcacaggtaagttaagggtgctctgcattttgtttaatggctattgttctagaagatgctacacattacaaaagcatggaagcttacaggtgggctttgtcttatatatatacaagtgtgtgatgtttctgaatcagttgaaagttcgccattgtaagataagcatgt
gi|12 : aaggagaaaggcagaaaactgtccaatctgtgagGAA-AGAAT-GGACAGTT---G-TGA-TCTTTCT--CCTAC-------TCT-AAAGAACA-TGA-TTTTCTCTTTT----------GA--------AATATA-AGAT-GTATT-GTATTAAAGAGGTTTTTTT-------TT----------TACA---ATAGCAtagcatacat
gi|11 : GCA---GTAGT-----TCTTTCT-CACAG-AA---TGG--ACAGT
gi|3 : aacctatagaatggacaattcaaacaaaagaactacgtcacagtcatgatttaaaagtctcaaAG-AA---TAG--ACACTT-ACAGGTAAGCTTAA---CTGC----T-TAGGCAcgtcgattagtcctt
gi|3 : tgaagaaatggacagtttttttacagta-TTAC-AGTAAGAATAGACA---C-TT-ACA-GGTAA-GC-TT-AACTGCT--TA-GGCACGACATAACCTATA-AG----ATGTGATGTTTCTG-AAATCATGTTG--AAAGTTCG---CCTTTGTAA-GATAAGC-ATGTCTTCCTCTTATGGAGAAA--AAATTT-----TCTTAACTTTGGTTCAAATTTCAAAGAAATGAATA--TGCGCAAAAATACTGA-G-GT-ATAACTTAGTGT--ACACTTTG-ATCTA-CGAATGGAAAATGAT-GAACCACAAAAT-AAGGA-AAATCTTTTACAGTG--AACGATGGGTTTATT---CGGACACTTTT--GACTGAGGAAACT-------ACGAAT-C-TAGTCAGGATATTGAAAAA-TA-TTAAAGCAAAACTTTTTAAAA---ACA-TTGAATCACTGAG-AATTAAACAAGTTACTGA--GAAA--GACTAAC--AAAAAAAATCAAGGAAAGACTA-AGGTTGGGCTAGTGCCATTGTTTATAAGTTTGGGTAGCAAAGCAGGAAATAAAACA-AATGGGCAC--AAA-ATTCC-TTTGG-ATTTAC----------------------ATC-ACAAG-A-AGTTATATTTTA-AAATGAGCCGATTATAGTTCATGGGAATGTGTAAGTGAAAATGTGACAAC--AAATGGCAGAGACAAAAGAA-AAAGAT-GAAAAGG-TAC--C-A---GGGGCTGAGTCAA-TAC-------CACTAG-G-AAATAAAATCAAAATCTGGCAAT-GTTCTTTGGAATTTCAA-AGTTTTGAAGATATG--T--ATTAAATGTTGCATTTT--CAGTCTG--TA-TTGTTGTTTTCC----CTCTTGGGTACATTTCC-AA--T-TTTA-CCTT--CCTTGTCC-ATT-CTG-TTTTG--T-TGT-AA--ACTGTCCCATT----------------CT--G-----ATTG--------AAAAAAACCT-GTCCCATTC----T--TAAAAGAAT-G-ACCG-----TTC-TTCAAGAAGAAT----AG-ACA-----T-T------------------------ACAGGTAACTTAA------------ATG--GTTAGCAACAACAATAACACCTATAGAATG--ACAATTCAAcgacataacctataagatgtgatgtttctgaaatcatgttgaaagttcgcctttgtaagataagcatgtcttcctcttatggagaaaaaattttcttaactttggttcaaatttcaaagaaatgaatatgcgcaaaaatactgaggtataacttagtgtacactttgatctacgaatggaaaatgatgaaccacaaaataaggaaaatcttttacagtgaacgatgggtttattcggacacttttgactgaggaaactacgaatctagtcaggatattgaaaaatattaaagcaaaactttttaaaaacattgaatcactgagaattaaacaagttactgagaaagactaacaaaaaaaatcaaggaaagactaaggttgggctagtgccattgtttataagtttgggtagcaaagcaggaaataaaacaaatgggcacaaaattcctttggatttacatcacaagaagttatattttaaaatgagccgattatagttcatgggaatgtgtaagtgaaaatgtgacaacaaatggcagagacaaaagaaaaagatgaaaaggtaccaggggctgagtcaataccactaggaaataaaatcaaaatctggcaatgttctttggaatttcaaagttttgaagatatgtattaaatgttgcattttcagtctgtattgttgttttccctcttgggtacatttccaattttaccttccttgtccattctgttttgttgtaaactgtcccattctgattgaaaaaaacctgtcccattcttaaaagaatgaccgttcttcaagaagaatagacattacaggtaacttaaatggttagcaacaacaataacacctatagaatgacaattcaaca
gi|4 : tgaagaaatggacagtttttACACAGAAT-AAAGA-AAACTT---AC-CTG--AA-GATGGTTTCATTTTCGG-ACATTTCT---GATGAGGAACTT-------ATGAATGC-TAGTCAGGATATTGAAAA--TA-TTGA-GCG---CTTTCTTAAA---CCA-TTGAATCAA-GAGGAATTAAACAAGTT--------------ACTGA----AGAAAT--CGAGGAATGACAA--GGTGGG-CTA-TGCCATTGTTTT-GAAATT----AGCAAAACAGGAAA-TAAA--TATTGG---ACCATA-ATTCA-TTTGG-ATTTAC----------------------ATCA-CAAG-AAG---ATATTTTGAAAATAA-----T--TA-TTCATGGGAACGT-TAAATGAA---GTGACACA--AAAT-GCAGAG-GAGGAGAACGAAAAA-TGAAA-GAAA---C-A---GGGACTGGA--AA-TAC-------TACTAGTGAAATTAAAATC-AAATCTGGCAAT-GTTTTTTAGGAGTTCAA--GTTTTGAAGATATG--TAAATTAAATGTTGCA-TTT--CA---TGTATATTTGTT-GTTTAC----CCCTTGGGTACA-TTCCAAA--C-TTTA-CCTG-GCACTGTCC-ATT-CT--GTTTG--TGTGT--A--ACTAT-CCATT----------------CT--GTTT--GTTG-------------TAACT-GT-CCATTTTGATT--TAAAA------AA-AA-----TT--------AAGAAT----GG-ATAA----T-----------------AGACACTT-ACAGGTAACTTAATGG--A--------C-AGTTAGC-ACAACAATA--ACCTATAGAATGG-ACAATTCAAA-CAAATca
gi|5 : TCAGGATATTGAAAA--TA-TTAA-GCA---CTTTTTTAAA---CCA-TTGAATCA--AGAGAATTAAACAAGTTACTGAA--GAAAGGACTAACA-AAAAAAAA-CAAGGAAAGACAAGGAG--GG-CTA-TGCCAATGTATA-AAGA-TTGGAAGCAAAGCAG-GAA-AAAACAAATTGGGCCA--AAA---TTACTTTGGAATTA-C----------------------ATC-ACAAGAA-G---ATATTTTGAAAATG-AGCGAT--T-ATTCATGGGAATGT-TAAATGAA---GTGACACA--AAAT-GCAGAG-CAAAAGAA-AAAGAT-GAAAA-G-TAC--C-A---GGGGCTGGC--AA-TAC-------CACTAGTGAAATTAAAATC-AAATCTGGCAAT-GTTTCTTTGGATTTCAA--GTTTTGAAGATATG--TAAATTAAATGTTGCA-TTT--CA---TG--TATTTGTTGTTTTCC----CTCTTGGGTACA-TTCC-AA--TCTTTAGCCTGTTCATTTTTCCATT-CT--GTTGT--T-TGT--A--ACTGT-CCATT----------------CT--G-----ATTG---------AAAAAACCT-GT-CCATTC----T--TAAAAGAAT-GCACAT-----TCT-TTCAAGAAGAAT----AG-A----------------------------CACTT-ACA-GTAACTTAAT--------T-------GTTAGCAA--ACAATA--ACCTATA-AATGG-ACAATTCCAA-ACAAT
gi|16 : -TGCCATTGTTTA-AAG-TTTGGTAGCAAAACAGAAAA-AAAAta
gi|6 : -AAAACA------GGAA--GAATGTTCA-TTAGA-TTTT-C----------------------ACCA-TAAG-AAG---GCATTTAA-AAATGAA-TGAT--TA-TTTATAGGAATAT-GAAATGTA---GAGACACACAAAAT-ACAGAG-GAAGAGAA-ACGAGT--GAAG-G-TA---CCA---GGGACTGG---AAACAT-------CACTAATGGAACCAAAATC-AAATCTGGCGATGTGTCCTTC-GAGTTCAA--GTTTTGAAGATACG--TAAACTAAATGTT--------------TG-----TTGCC-CCCCCCCCCTCCCTTGGGTACA-CTGC-AA--TCTTTA-CATG-GCACTTTCTAATT-CT--ATTTG--T-TGT--A--ATTGT-CCATCATACATGTACCCCCACCTCAGAGAATATTGAGAGAGAAAAAAACAACT-GT-CCATTC----T--TAATA--AT-GGACAG-----TTC-TTAAAAAAGAAT----AG-ACAa
gi|14 : CCTTGGGTACA-TTCC-AA--TCTTTA-CCTG-ACACCGTCT-ATG-CT--CTTTG--ctta
gi|5 : TTA--C-TGTAAG----TGT-CTATT---------------CTT--C------TTGA-----AAGAA------T-GT-GCATTC---TT--T-TAAGAAT-GGACAGGT---TTT-TTCAATCAGAAT----GG-AC-AG---T-T
gi|1 : tcaggatattgaaaatattaagcacttttttaaaccattgaatcaagagaattaaacaagttactgaagaaaggactaacaaaaaaaaacaaggaaagacaaggagggctatgccaatgtataaagattggaagcaaagcaggaaaaaacaaattgggccaaaattactttggaattacatcacaagaagatattttgaaaatgagcgattattcatgggaatgttaaatgaagtgacacaaaatgcagagcaaaagaaaaagatgaaaagtaccaggggctggcaataccactagtgaaattaaaatcaaatctggcaatgtttctttggatttcaagttttgaagatatgtaaattaaatgttgcatttcatgtatttgttgttttccctcttgggtacattccaatctttagcctgttcatttttccattctgttgtttgt-TGTAAGTGACTAT-TC--T---------------TCT--G-----A------------AGAGAAACT-GT-CCATTCTT-TT--TGAAAGAAC-TTTCCA-----TTC-TT--TTAAGAAT----GGAACAGGTTTT-TTTTTCAATCAGAA--TGACActtaattgttagcaaacaataacctataaatggacaattccaaacaatta
gi|1 : gtaaaggagaaaggccgaaaaactgtctcactctgtgggaggaaaaagaactgtcgagggcggtatgtccacgagatgagttctttctcttcaacagacgtggacagtttatacaggcctttctgccctattctaaggagcaatgattttccccttttggtaggatgggattttcagataatggattgtatttgaattcagatagaattgttcaggtcgtcatacatgcaaaagtaaaaatattgtttacagaagaataagaacagtccacataaaagttaaggcgtgtaaattgctggcattttgttaatggctattgtttttataaggatctcacgtggatggctcacacatctacaaagcagcgaagaaacgttacaaggtggcgctttgtttcagactattatacagagtaaggtgtgatgtttttgaatcagttgctaaagttcgaactccttgtaagataagcaagtcttcctcttatggagaaaagcgtactaagtattataactggtcaaaatttaaagaaacctgaatatgcgcaaaatactgatgtgttatataagtgcactttggatctaagaaatggaaaatagtgaaacacaaaataaggacaaattttttacgtagaaagatgggttcattttcgacattttttgaatgaggtactttacatgtacgaatgcctagtcaggatattgaaaaattaattgagcatttttaaaaagccaattgaatcaagagaattaagcaagttactgagaaaggactaaccaaaagaaaacaggaaaggcaaaggtgactatgccattgtttaaagttggtagaaaacaggataaaacatattgggccaaaattcatttggattttttttttttttttttttttttttaccatcacaagatattttgaaaatgaggcgattattcatgggaatgttaaatgaagtgacacaaaatgcagaacaagaggaaaaagtggaaaagtaacgcagctgggactgaaatacatgtatgcactagtgaaattaaaattcaatctggcaatgtttcttttggagttcagttttgaagatacgtttaaattaaatgttgcatttcccatgtatttgttgttttcctccttgggtacattccaattttttacctggcatgtccattgtcttgttttgttttgtccAA--ACTGT-CCATT---------------CTT--T------TTGA-----AAGAA-----CT-TT-CCATTC---TT--T-TAAGAATGGAACAGGTTTTTTT-TTCAATCAGAATGACAGG-ACAAggtaaattaatgggcagtttgtgagttagcaaccaatacctatagaatggacaattcaaaccaaagggttacgtcacaaatcatgtttttaaatgtacgctatgaagaatgtgt
gi|3 : gtaaaggagaaaggccgaaaaactgtctcactctgtgggaggaaaaagaactgtcgagggcggtatgtccacgagatgagttctttctcttcaacagacgtggacagtttatacaggcctttctgccctattctaaggagcaatgattttccccttttggtaggatgggattttcagataatggattgtatttgaattcagatagaattgttcaggtcgtcatacatgcaaaagtaaaaatattgtttacagaagaataagaacagtccacataaaagttaaggcgtgtaaattgctggcattttgttaatggctattgtttttataaggatctcacgtggatggctcacacatctacaaagcagcgaagaaacgttacaaggtggcgctttgtttcagactattatacagagtaaggtgtgatgtttttgaatcagttgctaaagttcgaactccttgtaagataagcaagtcttcctcttatggagaaaagcgtactaagtattataactggtcaaaatttaaagaaacctgaatatgcgcaaaatactgatgtgttatataagtgcactttggatctaagaaatggaaaatagtgaaacacaaaataaggacaaattttttacgtagaaagatgggttcattttcgacattttttgaatgaggtactttacatgtacgaatgcctagtcaggatattgaaaaattaattgagcatttttaaaaagccaattgaatcaagagaattaagcaagttactgagaaaggactaaccaaaagaaaacaggaaaggcaaaggtgactatgccattgtttaaagttggtagaaaacaggataaaacatattgggccaaaattcatttggattttttttttttttttttttttttttaccatcacaagatattttgaaaatgaggcgattattcatgggaatgttaaatgaagtgacacaaaatgcagaacaagaggaaaaagtggaaaagtaacgcagctgggactgaaatacatgtatgcactagtgaaattaaaattcaatctggcaatgtttcttttggagttcagttttgaagatacgtttaaattaaatgttgcatttcccatgtatttgttgttttcctccttgggtacattccaattttttacctggcatgtccattgtcttgttttgttT-CTATTC---TTC-TTGAAGAAC-GGTCA------TTC-TT--TTAAGAAT----GGGACAGG---TTTTTTTCAATCAGAATGGGACAGTTTACActcttcagaagaatagtcacttacaggtaaattaatgggcagtttgtgagttagcaaccaatacctatagaatggacaattcaaaccaaagggttacgtcacaaatcatgtttttaaatgtacgctatgaagaatgtgt
gi|5 : tgaagaaatggacagtttttttacagtaagaatagacacttacaggtaagcttaactgcttaggcacgacataacctataagatgtgatgtttctgaaatcatgttgaaagttcgcctttgtaagataagcatgtcttcctcttatggagaaaaaattttcttaactttggttcaaatttcaaagaaatgaatatgcgcaaaaatactgaggtataacttagtgtacactttgatctacgaatggaaaatgatgaaccacaaaataaggaaaatcttttacagtgaacgatgggtttattcggacacttttgactgaggaaactacgaatctagtcaggatattgaaaaatattaaagcaaaactttttaaaaacattgaatcactgagaattaaacaagttactgagaaagactaacaaaaaaaatcaaggaaagactaaggttgggctagtgccattgtttataagtttgggtagcaaagcaggaaataaaacaaatgggcacaaaattcctttggatttacatcacaagaagttatattttaaaatgagccgattatagttcatgggaatgtgtaagtgaaaatgtgacaacaaatggcagagacaaaagaaaaagatgaaaaggtaccaggggctgagtcaataccactaggaaataaaatcaaaatctggcaatgttctttggaatttcaaagttttgaagatatgtattaaatgttgcattttcagtctgtattgttgttttccctcttgggtacatttccaattttaccttccttgtccattctgttttgtT-CTATTC---TTCTTGAAAGAAT-GTGCA------TTC-TT--TTAAGAAT----GG-ACAGG---T-TTTTTCAATCAGAAT-GGACAGTTAcattacaggtaacttaaatggttagcaacaacaataacacctatagaatgacaattcaaca
gi|9 : tcaggatattgaaaatattaagcacttttttaaaccattgaatcaagagaattaaacaagttactgaagaaaggactaacaaaaaaaaacaaggaaagacaaggagggctatgccaatgtataaagattggaagcaaagcaggaaaaaacaaattgggccaaaattactttggaattacatcacaagaagatattttgaaaatgagcgattattcatgggaatgttaaatgaagtgacacaaaatgcagagcaaaagaaaaagatgaaaagtaccaggggctggcaataccactagtgaaattaaaatcaaatctggcaatgtttctttggatttcaagttttgaagatatgtaaattaaatgttgcatttcatgtatttgttgttttccctcttgggtacattccaatctttagcctgttcatttttccattctgttgtttg--AAACCTTCAACAG----TTTAATGG--ACAGTTTATGGAGTTACCA-CAACAATA--ACCTATAGAATGG-ACAATTCAAACAAAAGGTTTACGTCAC-AATCATGcacttacagtaacttaattgttagcaaacaataacctataaatggacaattccaaacaatta
gi|15 : aatattaaagtggattcat--AGACACTTA-CAGGTAACTTAATG---------------CTTAGC-ACGACAATA--ACCTATAttttaaaattcagtatacggtggctaatatgt
gi|11 : A--ACCTATAGAATGG-ACAATTCAAACAAAAGAACTACGTCAC-AGTCATG
1 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|13 ): GTAATTTAAGATAGAAGCCGAAAACTGTCTATTATGTCAGAGAAAGAACTGATGGGGGTTGAGACCAGTTGTTTCTTTCACAGAATG
Alignments
lowQualScore : 1111111111111111111111
lowQualScore : 11 3333333 11111 1111 111 2222 444444444444444 6666666666666666 111 1111 111 1 111 11 1 1 222222 1 1 8888888888888888888888888888 11 1 111 444444444444444 111 111 1 2222 11 2 11 111 1 1 5555555555555 111 1 444444 222 2 11 111 1111 333 1 1 1 11 1 1 1 1 1 11 3333333 11 2222 111 111 1111 11111 11 1 22222 1 1 1111 11 1 66666666666666666666666 22 11 111 111 11 11111 111 1 2222222 222 1 111 111111 1 111 11 666666666666666666666666666666666666666 2222222222 11111 1111111 1111111111111111111111 88888888888888 1
lowQualScore : 2 11 5 777 2222222 555 3 3 3 11111 55 9999 111 6666 6 77 2 6 6 111111111111111 6 6 6 6 3 0000000000000000 6 444 7777 222 3 0 777 33 0 0 222222 8 3 3 0 0 5555555555555555555555555555 22 0 3 8 8 111 8 8 8 8 8 000000000000000 777 777 0 0000 33 0 33 777 1 0 0 6 2222222222222 11 333 2 1 0 777777 7 111 7 3 33 999 6 9999 555 0 0 3 0 33 0 3 0 0 0 0 33 9 2222222 22 2222 8 444 444 8 3333 0 11111 3 0 11 6 3 1 77777 6 6 1 1 5 0000 00 1 11111111111111111111111 3 6 22 3 99 22 88 6 111 6 111 99 6 6 99 6 44 6 66666 888 3 1111111 1 1 6 444 4 6 99 0 99 6 99 111 99 4 999999 5 777 5 77 77 1 77 444 5 22 1 5 111111111111111111111111111111111111111 1 2 5 5 5 2222222222 22222 55 8888888 3 5 55 4444444444444444444444 5 5 00000000000000 99 2 66 5 5 1 0
lowQualScore : . .. . ... ....... ... . . . ..... .. .... ... .... . .. . . . ............... . . . . . ................ . ... .... ... . . ... .. . . ...... . . . . . ............................ .. . . . . ... . . . . . ............... ... ... . .... .. . .. ... . . . . ............. .. ... . . . ...... . ... . . .. ... . .... ... . . . . .. . . . . . . .. . ....... .. .... . ... ... . .... . ..... . . .. . . . ..... . . . . . .... .. . ....................... . . .. . .. .. .. . ... . ... .. . . .. . .. . ..... ... . ....... . . . ... . . .. . .. . .. ... .. . ...... . ... . .. .. . .. ... . .. . . ....................................... . . . . . .......... ..... .. ....... . . .. ...................... . . .............. .. . .. . . . .
lowQualScore : 5 00 0 000 6666666 888 3 3 3 22222 00 3333 777 0000 7 77 5 7 7 000000000000000 7 7 7 7 5 0000000000000000 7 000 0000 000 0 0 555 88 0 0 222222 8 2 2 0 0 5555555555555555555555555555 55 0 2 0 0 888 0 0 0 0 0 222222222222222 555 555 0 8888 22 0 88 555 0 0 0 7 7777777777777 77 777 0 0 7 000000 3 000 3 7 00 000 7 0000 000 0 0 2 0 88 0 2 0 0 0 0 88 2 5555555 55 4444 0 000 000 0 8888 8 66666 2 8 00 0 8 4 22222 7 7 7 3 7 4444 55 3 77777777777777777777777 5 7 88 2 22 77 77 7 777 7 777 22 7 7 22 7 00 7 77777 333 3 7777777 7 7 7 222 0 7 22 7 22 7 22 777 22 2 222222 7 000 7 44 44 4 99 666 7 99 4 7 999999999999999999999999999999999999999 4 8 0 0 0 9999999999 55555 22 6666666 0 0 22 0000000000000000000000 7 7 44444444444444 55 8 11 7 7 0 0
consensus : CGAGGGCNGTAGGCCC--GAGATGA-GTTCTTT---CTCT-CAGAACAG---A-AT-G-GACAGTTTNC---GGCCTTTCT--CCTAC--T-TA---AAG-A-CA-T-GATTTTCCTC-TTTT-GG---GATGGA---T-TCAAATA-A-AGAT-GTATT-GTATTCAGAATGAATTGTTT-----------C----T-GCAATA---GTA----AAAT-CNTTGTNCACAG-AA---TAG--ACAGTC-ACAGGTAAGTTAAGG-GTGC----T-CTGGCATTTTGTTTAAT-G-CTATTGTTCT----A-----------GAAC--------GATG-CT-ACACAT-TACAA-A--AGCATGGAAAC-TT-ACA-GGTGG-GC-TT-G-----T--CAGN-TAT-ATATA---TACA-AGT---GTGTGATGTTTCTGAA-TCA-GTTG--AAAGTTCG---CCTTTGTAA-GATAAGC-ATGTCTTCCTCTTATGGAGAAAA-CGT-CTAA-T-TTTTAACTTTGGTCCAAAATTTAAAGAAA--TGAATATGCGCAAAAATACTGATG-GTTATA-CTTAGAGT--ACACTTTGGATCTAA-AAATGGAAAATGA-TGAAACACAAAAT-AAGGA-AAATTTTTTAC-GT--GAA-GATGGGTTCATTTT-C-G-ACA-TTTTT--GAATGAGGAACT-------TACGAATG-CTAGTCAGGATATTGAAAAAT--ATT-GAGC---ACTTTTTTAAA---CC-ATTGAATCA-AG-AGAATTAAACAAGTTACTG--AGGAAAGGACTAAC--AAAAAAAA-CAAGGAAAGACAAGG-GTT-GGCTA-TGCCATTGTTTA-AAGATTTGGTAGCAAAACAGGAAA-AAAACATATTGGGCCAAAAATTCATTTGGATT-----------------------TAC-ATCAACAAGAAG--ATATTTTGAAAATGAG-CGATT-A---TTCATGGGAATGT-TAAATGAA---GTGACACA--AAAT-GCAGAG-CAAGAGAA--AAAAGT-GAAAA-GTACCA-----GGGACTGG---AA-TAC-------CACTAGTGAAATTAAAATC-AAATCTGGCAATG-TTTCTTT-GGAGTTC-AA--GTTTTGAAGATACG--TAAATTAAATGTTGCA-TTT--CA---TGTAT--TTGTTGTTTTCC------CCCTTGGGTACA-TTCCAA-TCTTTA-CCTG-GCA-CCGTCC-AT--TCT--NTTTGT-TGT-AAACTGT-CCATT---------------CC---T--G-----ATTGA-----AAAAAAAAAACTG-T-CCAT-TCT---T----TAAAAGAATG-----GACAGTTC-TT-------CAAAAAGAA-TG-GACAG-TTTTTT-C-AT-AGAA----AGACACTT-ACAGGTAA-CTTAATGGA-----TATG-AGTTAGCAACGACAATA--ACCTATAGAATGG-ACAATT-CAAACAAAAGGNTTACGTCAC-AATCATG
Reference ( family-6810 ) : CGAGGGCGGTAGGCCC--GAGATGA-GTTCTTT---CTCT-CAGAACAG---A-AT-G-GACAGTTTNN---GGCCTTTCT--CCTAC--TCTA---AAG-A-CA-T-GATTTTCCTT-TTTT-GG---GATGGA---T-TCAAATA-A-AGAT-GTATT-GTATTCAGAATGAATTGTTT-----------CA---T-GCAATA---GTA----AAAT-CTTTGTTCACAG-AA---TAG--ACAGTC-ACAGGTAAGTTAAGG-GTGC----T-CTGGCATTTTGTTTAAT-G-CTATTGTTTT----A-----------GAA---------GATG-CT-ACACAT-TACAA-A--AGCATGGAAGC-TT-ACA-GGTGG-GC-TT-G-----T--CAGN-TAT-ACATA---TACA-AGT---GTGTGATGTTTCTGAA-TCA-GTTG--AAAGTTCG---CCNTTGTAA-GATAAGC-ATGTCTTCCTCTTATGGAGAAAAGCGNNCTAAGTATCNTAACTTTGGTCCAAANTTCAAAGAAACGNGNATATGCGCAAAAATACTGATGTGTTATAACTTAGNGT--GCACTTTGGATCTAACGAATGGAAAATGANTGAAACACAAAAT-AAGGA-AAATTTTTTAC-GT--GAA-GATGGGTTCATTTT-C-G-ACA-TTTTT--GAATGAGGAACT-------TACGAATG-CTAGTCAGGATATTGAAAAAT--ATT-GAGC---ACTTTTTTAAA---CC-ATTGAATCA-GG-GGAATTAAACAAGTTACTG--AGGAAAGGACTAAC--AAAAAAAA-CAAGGAAAGACAAGG-GTT-GGCTA-TGCCATTGTTTA-AAGATTTGGTAGCAAAACAGGAAA-AAAACATATTGGGCNAAAAATTCATTTGGATT-----------------------TAC-ATCAACAAGAAG--ATATTTTGAAAATGAGGCGATT-A---TTCATGGGAATGT-TAAATGAA---GTGACACA--AAAT-GCAGAG-CAAGAGAA--AAAAAT-GAAAA-GTACCA-----GGGACTGG---AA-TAC-------CACTAGTGAAATTAAAATC-AAATCTGGCAATG-GTTCTTTNGGAGTTC-AA--GTTTTGAAGATACG--TAAATTAAATGTTGCA-TTT--CA---TGTAT--TTGTTGTTTTCC------CCCTTGGGTACA-TTCCAA-TCTTTA-CCTG-GCA-CTGTCC-AT--TCT--NTTTGT-TGT-AAACTGT-CCATT---------------CC---T--G-----ATTGA-----AAAAAAAAANCTG-T-CCAT-TCT---T----TAAAAGAATG-----GACAGTTC-TT-------CAANAAGAA-TG-GACAGGTTTTTT-CAATCAGAA----AGACACTT-ACAGGTAA-CTTAATGGA-----TATG-AGTTAGCAACAACAATA--ACCTATAGAATGG-ACAATT-CAAACAAAAGGNTTACGTCAC-AATCATG
gi|1 : A-GTTCTTTTTCCTCC-CA---CAG---A-GT-GAGACAGTTTTTC--GGCCTTTCT--CCT
gi|1 : gtaa-TAT-AAACTGT-CCACG---------------TC---T--G------TTGA-----AGAGAAAGAACT-----CATCTCG---T----GGACATACCGCCCTCGACAGTTC-TTTTTCCTCCCAC-AGAG-TGAGACAG--TTTTT-Cgtcgagggcggtatgtccacgagatgagttctttctcttcaacagacgtggacagtttatacaggcctttctgccctattctaaggagcaatgattttccccttttggtaggatgggattttcagataatggattgtatttgaattcagatagaattgttcaggtcgtcatacatgcaaaagtaaaaatattgtttacagaagaataagaacagtccacataaaagttaaggcgtgtaaattgctggcattttgttaatggctattgtttttataaggatctcacgtggatggctcacacatctacaaagcagcgaagaaacgttacaaggtggcgctttgtttcagactattatacagagtaaggtgtgatgtttttgaatcagttgctaaagttcgaactccttgtaagataagcaagtcttcctcttatggagaaaagcgtactaagtattataactggtcaaaatttaaagaaacctgaatatgcgcaaaatactgatgtgttatataagtgcactttggatctaagaaatggaaaatagtgaaacacaaaataaggacaaattttttacgtagaaagatgggttcattttcgacattttttgaatgaggtactttacatgtacgaatgcctagtcaggatattgaaaaattaattgagcatttttaaaaagccaattgaatcaagagaattaagcaagttactgagaaaggactaaccaaaagaaaacaggaaaggcaaaggtgactatgccattgtttaaagttggtagaaaacaggataaaacatattgggccaaaattcatttggattttttttttttttttttttttttttaccatcacaagatattttgaaaatgaggcgattattcatgggaatgttaaatgaagtgacacaaaatgcagaacaagaggaaaaagtggaaaagtaacgcagctgggactgaaatacatgtatgcactagtgaaattaaaattcaatctggcaatgtttcttttggagttcagttttgaagatacgtttaaattaaatgttgcatttcccatgtatttgttgttttcctccttgggtacattccaattttttacctggcatgtccattgtcttgttttgttttgtcctgtcattctgattgaaaaaaaaacctgttccattcttaaaagaatggaaagttctttcaaaaagaatggacagtttctcttcagaagaatagtcacttacaggtaaattaatgggcagtttgtgagttagcaaccaatacctatagaatggacaattcaaaccaaagggttacgtcacaaatcatgtttttaaatgtacgctatgaagaatgtgt
gi|1 : gtaaaggagaaaggccCGAGGGCGGTATGTCCACGAGATGA-GTTCTTT---CTCTTCA--ACAG---ACGT-G-GACAGTTTATACAGGCCTTTCTGCCCTAT--TCTA---AGG-AGCAAT-GATTTTCCCC-TTTT-GGTAGGATGGGATTT-TCAGATA-ATGGATTGTATTTGAATTCAGATAGAATTGTTCAGGTCGTCATACA---T-GCAAAA---GTA----AAAA-TATTGTTTACAG-AAGAATAAGAACAGTCCACATAAAAGTTAAGGCGTGTAAATTGCTGGCATTTTGTT-AAT-GGCTATTGTTTTTATAA-----------GGATCTCACGTGGATGGCTCACACATCTACAA-AGCAGCGAAGAAACGTT-ACAAGGTGGCGC-TTTG-----TTTCAGACTAT----TA---TACAGAGTAAGGTGTGATGTTTTTGAA-TCA-GTTGCTAAAGTTCGAACTCCTTGTAA-GATAAGC-AAGTCTTCCTCTTATGGAGAAAAGCGTACTAAGTATTATAAC--TGGT-CAAAATTTAAAGAAACCTGAATATGCGC-AAAATACTGATGTGTTATA---TA-AGT--GCACTTTGGATCTAAGAAATGGAAAAT-AGTGAAACACAAAAT-AAGGACAAATTTTTTAC-GTAGAAA-GATGGGTTCATTTT-C-G-ACATTTTTT--GAATGAGGTACTTTACATGTACGAATGCCTAGTCAGGATATTGAAAAATTAATT-GAGC---A--TTTTTAAAAAGCCAATTGAATCA-AG-AGAATTAAGCAAGTTACTG--A-GAAAGGACTAACCAAAAGAAAA-C-AGGAAAGGCAAAG-G-T-GACTA-TGCCATTGTTTA-AAG--TTGGTAG-AAAACAGG-AT-AAAACATATTGGGCC-AAAATTCATTTGGATTTTTTTTTTTTTTTTTTTTTTTTTTACCATC-ACA---AG--ATATTTTGAAAATGAGGCGATT-A---TTCATGGGAATGT-TAAATGAA---GTGACACA--AAAT-GCAGAA-CAAGAGGA--AAAAGTGGAAAA-GTAACGCAGCTGGGACTGA---AA-TACATGTATGCACTAGTGAAATTAAAATT-CAATCTGGCAATG-TTTCTTTTGGAGTTC--A--GTTTTGAAGATACGTTTAAATTAAATGTTGCA-TTTCCCA---TGTAT--TTGTTGTTTTCC------TCCTTGGGTACA-TTCCAATTTTTTA-CCTG-GCA--TGTCC-ATTGTCTTGTTTTGT-TTT-GTCCTGT--CATT----------------C---T--G-----ATTG------AAAAAAAAACCTGTT-CCAT-TC----T----TAAAAGAATG-----GAAAGTTCTTT-------CAAAAAGAA-TG-GACAGTTTCTCT----TCAGAAGAATAGTCACTT-ACAGGTAA-ATTAATGGGCAGTTTGTG-AGTTAGCAAC--CAAT---ACCTATAGAATGG-ACAATT-CAAACCAAAGGGTTACGTCACAAATCATGcaggcctttctgccctattctaaggagcaatgattttccccttttggtaggatgggattttcagataatggattgtatttgaattcagatagaattgttcaggtcgtcatacatgcaaaagtaaaaatattgtttacagaagaataagaacagtccacataaaagttaaggcgtgtaaattgctggcattttgttaatggctattgtttttataaggatctcacgtggatggctcacacatctacaaagcagcgaagaaacgttacaaggtggcgctttgtttcagactattatacagagtaaggtgtgatgtttttgaatcagttgctaaagttcgaactccttgtaagataagcaagtcttcctcttatggagaaaagcgtactaagtattataactggtcaaaatttaaagaaacctgaatatgcgcaaaatactgatgtgttatataagtgcactttggatctaagaaatggaaaatagtgaaacacaaaataaggacaaattttttacgtagaaagatgggttcattttcgacattttttgaatgaggtactttacatgtacgaatgcctagtcaggatattgaaaaattaattgagcatttttaaaaagccaattgaatcaagagaattaagcaagttactgagaaaggactaaccaaaagaaaacaggaaaggcaaaggtgactatgccattgtttaaagttggtagaaaacaggataaaacatattgggccaaaattcatttggattttttttttttttttttttttttttaccatcacaagatattttgaaaatgaggcgattattcatgggaatgttaaatgaagtgacacaaaatgcagaacaagaggaaaaagtggaaaagtaacgcagctgggactgaaatacatgtatgcactagtgaaattaaaattcaatctggcaatgtttcttttggagttcagttttgaagatacgtttaaattaaatgttgcatttcccatgtatttgttgttttcctccttgggtacattccaattttttacctggcatgtccattgtcttgttttgttttgtcctgtcattctgattgaaaaaaaaacctgttccattcttaaaagaatggaaagttctttcaaaaagaatggacagtttctcttcagaagaatagtcacttacaggtaaattaatgggcagtttgtgagttagcaaccaatacctatagaatggacaattcaaaccaaagggttacgtcacaaatcatgtttttaaatgtacgctatgaagaatgtgt
gi|10 : gtaaaggagaaaggccgaaaaactgtctcactctgtgggaggaaaaagaactgtTTCTTT---CTCT-CA---CAG---A-TT-G-GACAGTTTTC---TGCCTTTCT--CCTtttttaaatgtacgctatgaagaatgtgt
gi|10 : aAAACTG-T-CCAT-TCT---TTCTCTCACAGATTG-----GACAGTTT-Ttggacagtttgtgatctttctcctacttaaaacatgatttctcttttgaaataaagatgtattgtattcagaatgattttttttacaattagcatacat
gi|10 : aaggagaaaggcagAGAA-AG---A-AT-G-GACAGTTTGT---GATCTTTCT--CCTAC--T-TA---AA--A-CA-T-GATTT--CTC-TTTT-G-----------------AAATA-A-AGAT-GTATT-GTATTCAGAATGATTTTTTT----------------T-ACAATgtgatctttctcctacttaaaacatgatttctcttttgaaataaagatgtattgtattcagaatgattttttttacaattagcatacat
gi|11 : aaggagaaaggcagaaaactgtccaatctgtgagA--ACCTATAGAATGG-ACAATT-CAAACAAAAGAACTACGTCAC-AGTCATGtagcatacat
gi|11 : A-GTTCTTT---CTC------ACAG---A-AT-G-GACAGTTTGA---GACTTTTatttaaaagtctcaaactgtccattctgtgagaaagaactactgccgtcgattagtcctt
gi|12 : aacctatagaatggacaattcaaacaaaagaactacgtcacagtcatgatttGAA-AG---A-AT-G-GACAGTT-GT---GATCTTTCT--CCTAC--TCTA---AAGAA-CA-T-GATTTT-CTC-TTTT-G-----------------AAATATA-AGAT-GTATT-GTATTAAAGA-GGTTTTTTT-----------TT---T-ACAATA---GCA----actgccgtcgattagtcctt
gi|13 : ATCA-GTTCTTT---CTCT----GACAT---A-AT-A-GACAGTTTTC---GGCTTCTAT--CTTA
gi|14 : gtaattCCTTGGGTACA-TTCCAA-TCTTTA-CCTG-ACA-CCGTCT-AT--GCT--CTTTGgggggttgagaccagttgtttctttcacagaatg
gi|15 : ----AGACACTT-ACAGGTAA-CTTAATG-------------CTTAGC-ACGACAATA--ACCTATA
gi|16 : -TGCCATTGTTTA-AAG-TTTGGTAGCAAAACAGAAAA-AAAA
gi|2 : CGAGGTCTGTAGGCT---GAGATGACGTTCTTT----TCT-CAGAACAG---A-ATTG-GACAATT-AA---AGCCTTTCT--CCTAC--T-TA---AA----CA-T-TATTTTCTTT-TTTTTGG---GATGGA---T-TCAAATA-A-AGAT-GTATT-GTATTCAGAATGAATTGTTT-----------C----T-GCAATA---GTA----AAATTCTTTGTGCACAG-AA---TAG--ACAGTC-ACAGGTAAGTTAAGG-GTGC----T-CTGGCATTTTGTTTA-T-G-CTATTGTTCT----ATAAAAAAAAAAGAA---------GATG-CT-ACAC-T-TACAA-A---GCATGGAAGC-TT-ACA-GGTGG-GC-TT-G-----T--CAAT-TAT-ATATA---TACA-AGT---GTGTGATGTTTCTGA--TCAAGTTG--AAAGTTCG---CCTTTGTAAAGATAAGCCATGTAATC-TCTTATGTAAAAA--CGTTTT-----TTTCAACTT-GGTCGAAAATTTAAAGAA---------TGCGCAAAAATACTAATG-GT-ATA-CTTAAAGTTGACACTTTGGATCTAG-AAATGGAAAATAG--GAAACACAAAATCAAGGA-AAATTTTTTAC-GT--GAA-GTTGTGTTCATTTTTC-G-ACA-TTTTTTTGAATGAGGAACT-------TACGAATG-CTAGTCAGGATATTGAAAA-T--ATT-GAGC---ACTTTTTTATA---CC-ATTGAATCA-GA-GGAATTAAACAAGTT--TGAAAGAAAAGGACTAAC--AAGAAAAA-CAAGGAAAGGCAACA-GTT-GGCTA-TGTCATTGTTTA-AAGATTTGGTAGCAAAACAGAAAA-AAAACATATTGGGGAAAAAATTTATTTGGATT-----------------------T-C-ATCAACAAG-AG--ATATTTCGCAAATGAAGCGATTAA---TTCATGGAAATGT-TAGATGAA---GTGACACA--AAAT-GCAGAG-CAAGAGAA--GAAAGT-TAAAA-GTA-CA-----GGGACTGG---AA-TAC-------CAC-AGTG-AATTAAAATC-AAATCTGGCAAT--TTTCTTTTGGAGTTC-AATTTTTTTGAAGATATG--TAAATTAAATGTTGCA-TTT--CA---TGTAT--TTGTT-TTTCCC------CCCTTGGGTACA-TTCCAA-T-TTTA-CCTG-ACA-CCGTCTAAT--GCT--CTTTGT-TGTAAAACTGT-TCATT---------------CC---T--G-----ATTGA-----AAAAAAAAAACTC-T-CCAT-TCT---T----TAAAAGCATG-----AACAGTTC-TT-------CATAAAGAA-TG-GACAAGTTTTTT-CAAGAAGAA----AGACACTTAACAGGTAA-TTTAATGAAGTT--TGTG-AGTTAGCAACGACAATA--ACCTATAGAATGGAACAATT-CAAA-AAAATATTTACGTCAC-AATCATGa
gi|3 : AAGAAATG-GACAGTTTTTTTACAGTAAGAAT---AGACACTT-ACAGGTAAGCTTAAC----------TG--CTTAGGCACGAC-ATA--ACCTATAAGATG
gi|3 : tgT-TACAGTA--AGAATAGACAC-TT-ACA-GGTAA-GC-TT-AACTGCT--TAGG-CACGACATAACCTATA-AG----ATGTGATGTTTCTGAAATCATGTTG--AAAGTTCG---CCTTTGTAA-GATAAGC-ATGTCTTCCTCTTATGGAGAAAA-------AATTTTCTTAACTTTGGTTCAAATTTCAAAGAAA--TGAATATGCGCAAAAATACTGA---GGTATAACTTAGTGT--ACACTTT-GATCT-ACGAATGGAAAATGA-TGAACCACAAAAT-AAGGA-AAATCTTTTACAGT--GAACGATGGGTTTA--TT-CGG-ACA-CTTTT--GACTGAGGAAAC-------TACGAAT--CTAGTCAGGATATTGAAAAAT--ATTAAAGCAAAACTTTTTAAAA---AC-ATTGAATCACTG-AGAATTAAACAAGTTACTG--AG--AAAGACTAAC--AAAAAAAATCAAGGAAAGACTAAG-GTTGGGCTAGTGCCATTGTTTATAAGTTTGGGTAGCAAAGCAGGAAATAAAACA-AATGGGCACAAAATTCCTTTGGATT-----------------------TAC-ATC-ACAAGAAGTTATATTTT-AAAATGAGCCGATT-ATAGTTCATGGGAATGTGTAAGTGAAAATGTGACAAC--AAATGGCAGAGACAAAAGAA--AAAGAT-GAAAAGGTACCA-----GGGGCTGAGTCAA-TAC-------CACTAG-GAAA-TAAAATCAAAATCTGGCAAT--GTTCTTTGGAATTTCAAA--GTTTTGAAGATATG--T--ATTAAATGTTGCATTTT--CAGTCTGTA---TTGTTGTTTTCC------CTCTTGGGTACATTTCCAA-T-TTTA-CCT--TCC-TTGTCC-AT--TCTG-TTTTGT-TGT-AAACTGTCCCATT----------------C---T--G-----ATTG--------AAAAAAACCTG-TCCCAT-TC----T----TAAAAGAAT------GACCGTTC-TT-------CAAGAAGAA-TA-GACA----------------------------TT-ACAGGTAA-CTTAA----------ATG--GTTAGCAACAACAATAACACCTATAGAAT-G-ACAATT-CAAtgatgtttctgaaatcatgttgaaagttcgcctttgtaagataagcatgtcttcctcttatggagaaaaaattttcttaactttggttcaaatttcaaagaaatgaatatgcgcaaaaatactgaggtataacttagtgtacactttgatctacgaatggaaaatgatgaaccacaaaataaggaaaatcttttacagtgaacgatgggtttattcggacacttttgactgaggaaactacgaatctagtcaggatattgaaaaatattaaagcaaaactttttaaaaacattgaatcactgagaattaaacaagttactgagaaagactaacaaaaaaaatcaaggaaagactaaggttgggctagtgccattgtttataagtttgggtagcaaagcaggaaataaaacaaatgggcacaaaattcctttggatttacatcacaagaagttatattttaaaatgagccgattatagttcatgggaatgtgtaagtgaaaatgtgacaacaaatggcagagacaaaagaaaaagatgaaaaggtaccaggggctgagtcaataccactaggaaataaaatcaaaatctggcaatgttctttggaatttcaaagttttgaagatatgtattaaatgttgcattttcagtctgtattgttgttttccctcttgggtacatttccaattttaccttccttgtccattctgttttgttgtaaactgtcccattctgattgaaaaaaacctgtcccattcttaaaagaatgaccgttcttcaagaagaatagacattacaggtaacttaaatggttagcaacaacaataacacctatagaatgacaattcaaca
gi|4 : tgaagaaatggacagtttttACACAGAAT-AAAGA-AAACTT---AC-CT--GAA-GATGGTTTCATTTT-C-GGACA-TTTCT--GA-TGAGGAACT-------TATGAATG-CTAGTCAGGATATTGAAAA-T--ATT-GAGC---GCTTTCTTAAA---CC-ATTGAATCA-AGAGGAATTAAACAAGTTACTG--AAGAAA----T--------------CGAGGAATGACAAGG--TG-GGCTA-TGCCATTGTTTT-GAAATT----AGCAAAACAGGAAA-TAAA--TATTGGACCATAA-TTCATTTGGATT-----------------------TAC-ATCA-CAAGAAG--ATATTTTGAAAATAA-----TT-A---TTCATGGGAACGT-TAAATGAA---GTGACACA--AAAT-GCAGAG-GAGGAGAACGAAAAAT-GAAA--GAAACA-----GGGACTGG---AAATAC-------TACTAGTGAAATTAAAATC-AAATCTGGCAATG--TTTTTTAGGAGTTC-AA--GTTTTGAAGATATG--TAAATTAAATGTTGCA-TTT--CA---TGTATATTTGTTGTTT-AC------CCCTTGGGTACA-TTCCAA-ACTTTA-CCTG-GCA-CTGTCC-AT--TCT--GTTTGTGTGT-AA-CTAT-CCATT---------------CTGTTT--G------TTGT-----AA--------CTG-T-CCAT-TTTGATT----TAAAAAAA-----------ATT---------------AAGAA-TG-GATA-----------AT---------AGACACTT-ACAGGTAA-CTTAATGGA-----CA----GTTAGCA-CAACAATA--ACCTATAGAATGG-ACAATT-CAAACAAAca
gi|5 : TCAGGATATTGAAAA-T--ATT-AAGC---ACTTTTTTAAA---CC-ATTGAATCA-AG-AGAATTAAACAAGTTACTG--AAGAAAGGACTAAC--AAAAAAAAACAAGGAAAGACAAGGAG---GGCTA-TGCCAATGTATA-AAGATT-GGAAGCAAAGCAGGAAA-AAA-CAAATTGGGCCAAAA-TTACTTTGGAAT-----------------------TAC-ATCA-CAAGAAG--ATATTTTGAAAATGAG-CGATT-A---TTCATGGGAATGT-TAAATGAA---GTGACACA--AAAT-GCAGAG-CAAAAGAA--AAAGAT-GAAAA-GTACCA-----GGGGCTGGC--AA-TAC-------CACTAGTGAAATTAAAATC-AAATCTGGCAATG-TTTCTTT-GGATTTC-AA--GTTTTGAAGATATG--TAAATTAAATGTTGCA-TTT--CA---TGTAT--TTGTTGTTTTCC------CTCTTGGGTACA-TTCCAA-TCTTTAGCCTGTTCATTTTTCC-AT--TCT--GTTGTT-TGT--AACTGT-CCATT----------------C---T--G-----ATTG---------AAAAAACCTG-T-CCAT-TC----T----TAAAAGAATG-----CACATTCT-TT-------CAAGAAGAA-T----------------------------AGACACTT-ACA-GTAA-CTTAAT--------T-----GTTAGCA--AACAATA--ACCTATA-AATGG-ACAATTCCAAACAAt
gi|6 : AAAACAGGAAG-AA-------TG---------TTCATT-AGATT-----------------------TTC-ACCA-TAAGAAG--GCATTT-AAAAATGAA-TGATT-A---TTTATAGGAATAT-GAAATGTA---GAGACACACAAAAT-ACAGAG-GAAGAGAA--ACGAGT-GAAG--GTACCA-----GGGACTGG---AAACAT-------CACTAATGGAACCAAAATC-AAATCTGGCGATGTGTCCTTC--GAGTTC-AA--GTTTTGAAGATACG--TAAACTAAATG--------------------T--TTGTTGCCCCCCCCCCCTCCCTTGGGTACA-CTGCAA-TCTTTA-CATG-GCA-CTTTCTAAT--TCT--ATTTGT-TGT--AATTGT-CCATCATACATGTACCCCCACC---TCAGAGAATATTGAGAGAGAAAAAAACAACTG-T-CCAT-TCT---T-------AATAATG-----GACAGTTC-TT-------AAAAAAGAA-TA-GACAtta
gi|7 : GCCC--TCGATCA-GTTCTTT---CTCT-CA---CAG---A-AT-G-GACAGTTTTC---GGCCTTTCT--CCctta
gi|7 : CGAGGGCGGTAGGCCC--GAGATGA-GTTCTTT---CTC---AGA-CAG---A-AT-G-GACAATTTAA---AGCCTTTCT--CCTAC--T-TA---AA--A-CA-T-TATTTTCCTT-TTTT-GG---GATGGA---T-TCAAATA-A-AGAT-GTATT-GTATTCAGAATGAATTGTTT-----------C----T-GCAATA---GTA----AAAT-CTTTGTGCACAG-AA---TAG--ACAGTC-ACAGGTAAGTTAAGG-GTGC----T-CT-GCATTTTGTTTAATGG-CTATTGTTCT----A-----------GAA---------GATG-CT-ACACAT-TACAA-A--AGCATGGAAGC-TT-ACA-GGTGG-GCTTT-G-----T--C--T-TAT-ATATA---TACA-AGT---GTGTGATGTTTCTGAA-TCA-GTTG--AAAGTTCG---CCATTGTAA-GATAAGC-ATGTggtaggcccgagatgagttctttctcagacagaatggacaatttaaagcctttctcctacttaaaacattattttccttttttgggatggattcaaataaagatgtattgtattcagaatgaattgtttctgcaatagtaaaatctttgtgcacagaatagacagtcacaggtaagttaagggtgctctgcattttgtttaatggctattgttctagaagatgctacacattacaaaagcatggaagcttacaggtgggctttgtcttatatatatacaagtgtgtgatgtttctgaatcagttgaaagttcgccattgtaagataagcatgt
gi|8 : ggagaaaggccgaaaactgtccattctgtgagagaaagaactgat---CCCT-C-GATCAGTTCA-AT-G-GACAGTTTTC---GGCCTTTCT--CCT
gi|8 : atgtaaCGAGGGCCGTAGGCCC--GAGATGA-GTTCTTT---TTCT-T---ACAG---A-AT-G-GACAGTTTAA---GGCCTTTCT--CCTACATTGTACTTAAA-A-CA-TAAATTTTCATTATTGT-GG---GA-AGA---TGTCAAACA-A-AGAT-GGATT-GTA-TCAGAATTAATTGTTC-----------CAGGGTAGCAATACATGCATAGTAAAT-TATTGTTTACAGTAA---TAG--ACAGTC-ATAGGTAAGTTAGGG-GTGC----T-CCCGCATTTGGTTTAAT-G-GTATTGTCTT----A-----------GAAC--------TAT--CT-ACACAT-TACAA-A--AGCATGGAAAC-TTAACA-GGTGG-GC-TT-ccgtaggcccgagatgagttctttttcttacagaatggacagtttaaggcctttctcctacattgtacttaaaacataaattttcattattgtgggaagatgtcaaacaaagatggattgtatcagaattaattgttccagggtagcaatacatgcatagtaaattattgtttacagtaatagacagtcataggtaagttaggggtgctcccgcatttggtttaatggtattgtcttagaactatctacacattacaaaagcatggaaacttaacaggtgggcttttgtc
gi|9 : atgtaaaggagaaaggccgaaaactgtccattgaactgatTTAATGGACAGTTTATGGAGTTACCA-CAACAATA--ACCTATAGAATGG-ACAATT-CAAACAAAAGGTTTACGTCAC-AATCATGttgtc
Alignments
lowQualScore : 11 3333333 111111 1111111 1 333 11 444444444444444 44444444444444 111 1111 1 1 111 11 1 1 222222 1 1 888888888888888888888888888888888 1 111 333333333333333333 111 1 2222 11 2 11 111 1 1 55555555555555555 22 1 222 1111 1 1 11 11 1 1 1 1 11 1 1 1 1 22 3333333 1 2222 111 111 11111 11 1 22222 1 1 1111 1 66666666666666666666666 22 111 111 111 11 11111 111 1 2222222 111 111111 1 111 11 66666666666666666666666666666666666666 222222222 11111 44444444444444444444444444 222222 999999999999999999999999 88888888888888 1
lowQualScore : 1 11 5 777 2222222 555 3 3 3 222222 55 1111111 3 111 6 77 00 6 111111111111111 6 6 6 6 3 11111111111111 6 444 7777 0 1 1 0 777 33 0 0 222222 8 3 3 0 0 000000000000000000000000000000000 0 3 8 8 111 8 8 8 8 8 666666666666666666 3 777 0 0000 33 0 33 777 1 0 0 6 6 66666666666666666 22 5 555 7 7 8888 3 6 2 88 6 77 2 0 0 3 0 33 0 3 0 0 0 33 9 2222222 2 0 2222 8 444 444 8 8 8 0 11111 3 0 11 6 3 1 77777 6 6 1 1 5 0000 99 1 11111111111111111111111 3 6 22 3 99 22 6 444 6 111 6 111 99 6 6 99 6 44 6 66666 888 3 1111111 1 1 6 6 99 99 0 99 6 99 111 99 1 999999 5 777 5 77 888 1 77 444 5 99 5 99999999999999999999999999999999999999 4 4 4 000000000 2 11111 66666666666666666666666666 4 000000 2 4 4 000000000000000000000000 5 5 00000000000000 6 5 66 5 5 1 0
lowQualScore : . .. . ... ....... ... . . . ...... .. ....... . ... . .. .. . ............... . . . . . .............. . ... .... . . . . ... .. . . ...... . . . . . ................................. . . . . ... . . . . . .................. . ... . .... .. . .. ... . . . . . ................. .. . ... . . .... . . . .. . .. . . . . . .. . . . . . .. . ....... . . .... . ... ... . . . . ..... . . .. . . . ..... . . . . . .... .. . ....................... . . .. . .. .. . ... . ... . ... .. . . .. . .. . ..... ... . ....... . . . . .. .. . .. . .. ... .. . ...... . ... . .. ... . .. ... . .. . ...................................... . . . ......... . ..... .......................... . ...... . . . ........................ . . .............. . . .. . . . .
lowQualScore : 0 00 0 000 6666666 888 3 3 3 555555 00 8888888 3 777 7 77 33 7 000000000000000 7 7 7 7 5 33333333333333 7 000 0000 0 0 0 0 555 88 0 0 222222 8 2 2 0 0 000000000000000000000000000000000 0 2 0 0 888 0 0 0 0 0 888888888888888888 2 555 0 8888 22 0 88 555 2 0 0 7 7 77777777777777777 77 0 777 3 3 0000 3 7 0 33 7 33 0 0 0 2 0 88 0 2 0 0 0 88 2 5555555 5 0 4444 0 000 000 0 0 0 8 66666 2 8 00 0 8 4 22222 7 7 7 3 7 4444 77 3 77777777777777777777777 5 7 88 2 22 77 7 333 7 777 7 777 22 7 7 22 7 00 7 77777 333 3 7777777 7 7 7 7 22 22 7 22 7 22 777 22 7 222222 7 000 7 44 999 4 99 666 7 99 7 99999999999999999999999999999999999999 4 4 4 999999999 0 11111 11111111111111111111111111 4 666666 1 4 4 555555555555555555555555 7 7 44444444444444 2 4 11 7 7 0 0
consensus : CGAGGGCNGTAGGCCC--GAGATGA-GTTCTTT---CTCT-CAGAACAG---A-AT-G-GACAGTTTN-C---GGCCTTTCT--CC-------TACT-TAAA-A-CA-T-GATTTTC-CTCTTTT-GG---GATGGA---T-TCAAATA-A-AGAT-GTATT-GTATTCAGAATGAATTGTT-------TC-----T-GCAATA---GTA----AAAT-CNTTGTNCACAG-AA---TAG--ACAGTC-ACAGGTAAGTTAAGG-GTGC----T-CTGGCATTTTGTTTAAT-G-CTATTGTTCT-A-----------GAA-GAT------------GCT-ACACAT-TACAA-A--AGCATGGAAAC-TT-ACA-GGTGG-GC-TT-G-----T--CAGNCAT-ATATA---TACA-AGT---GTGTGATGTTTCTGAA-TCA-GTTG--AAAGTTCG---CCTTTGTAA-GATAAGC-ATGTCTTCCTCTTATGGAGAAAA-CGT-CTAATT-T--T-TAACTT-GGTC-AAAATTTAAAGAAA--TGAATATGCGCAAAAATACTGATG-GTTAT-ACTTAGAGT--ACACTTTGGATCTAN-AAATGGAAAATGATGAAACACAAAAT-AAGGA-AAATTTTTTAC-GTG--AA-GATGGGTTCATTTT-C-G-ACATTTTTT-GAATGAGGAACTT-------ACGAATGC-TAGTCAGGATATTGAAAAAT--ATT-GAGC---ACTTTTTTAAA---CCA-TTGAATCAA-GAG-AATTAAACAAGTTACTG--AGGAAAGGACTAAC--AAAAAAAA-CAAGGAAAGACAAGG-GTT-GGCTA-TGCCATTGTTTA-AAGATTTGGTAGCAAAACAGGAAA-AAAACATATTGGGCCAAAAATTCATTTGGATT-----------------------TAC-ATCAACAAGAAG--ATATTTTGAAAATG-A-G-CGATT-A---TTCATGGGAATGT-TAAATGAA---GTGACACA--AAAT-GCAGAG-CAAGAGAA--AAAAGT-GAAAA-GTACCA-----GGGACTGG---AA-TAC-------CACTAGTGAAATTAAAATC-AAATCTGGCAATGTTTC-TTTGGAGTTC--AA--GTTTTGAAGATACG--TAAATTAAATGTTGCA-TTT--CA---TG--TATTTGTTGTTTTCC------CCCTTGGGTACA-TTCCAA-TCTTTA-CCTG-GCA-CCGTCC-AT--TCT--NTTTGT-TGT-AAACTGT-CCATT----------------CT--G-----ATTGA-----AAAAAAAAAACTG-T-CCAT-TC---TT----TAAAAGAATG-----GAC--------------------------AGTTC-T------TCAAAAAGAATG-GAC-AGTT--TTTTCA----AG-AA----AGACACTT-ACAGGTAA-CTTAATGGA-----TGTG-AGTTAGCAACGACAATA--ACCTATAGAATGG-ACAATT-CAAACAAAAGGNTTACGTCAC-AATCATG
Reference ( family-6810 ) : CGAGGGCNGTAGGCCC--GAGATGA-GTTCTTT---CTCT-CAGAACAG---A-AT-G-GACAGTTTN-C---GGCCTTTCT--CC-------TACT-TAAAGA-CA-T-GATTTTC-CTCTTTT-GG---GATGGA---T-TCAAATA-A-AGAT-GTATT-GTATTCAGAATGAATTGTT-------TC-----T-GCAATA---GTA----AAAT-CNTTGTNCACAG-AA---TAG--ACAGTC-ACAGGTAAGTTAAGG-GTGC----T-CTGGCATTTTGTTTAAT-G-CTATTGTTCT-A-----------GAACGAT------------GCT-ACACAT-TACAA-A--AGCATGGAAAC-TT-ACA-GGTGG-GC-TT-G-----T--CAGNTAT-ATATA---TACA-AGT---GTGTGATGTTTCTGAA-TCA-GTTG--AAAGTTCG---CCTTTGTAA-GATAAGC-ATGTCTTCCTCTTATGGAGAAAA-CGT-CTAATT-T--T-TAACTTTGGTCCAAAATTTAAAGAAA--TGAATATGCGCAAAAATACTGATG-GTTAT-ACTTAGAGT--ACACTTTGGATCTAA-AAATGGAAAATGATGAAACACAAAAT-AAGGA-AAATTTTTTAC-GTG--AA-GATGGGTTCATTTT-C-G-ACATTTTT--GAATGAGGAACTT-------ACGAATGC-TAGTCAGGATATTGAAAAAT--ATT-GAGC---ACTTTTTTAAA---CCA-TTGAATCAA-GAG-AATTAAACAAGTTACTG--AGGAAAGGACTAAC--AAAAAAAA-CAAGGAAAGACAAGG-GTT-GGCTA-TGCCATTGTTTA-AAGATTTGGTAGCAAAACAGGAAA-AAAACATATTGGGCCAAAAATTCATTTGGATT-----------------------TAC-ATCAACAAGAAG--ATATTTTGAAAATG-A-G-CGATT-A---TTCATGGGAATGT-TAAATGAA---GTGACACA--AAAT-GCAGAG-CAAGAGAA--AAAAGT-GAAAA-GTACCA-----GGGACTGG---AA-TAC-------CACTAGTGAAATTAAAATC-AAATCTGGCAATGTTTC-TTTGGAGTTC--AA--GTTTTGAAGATACG--TAAATTAAATGTTGCA-TTT--CA---TG--TATTTGTTGTTTTCC------CCCTTGGGTACA-TTCCAA-TCTTTA-CCTG-GCA-CCGTCC-AT--TCT--NTTTGT-TGT-AAACTGT-CCATT---------------CCT--G-----ATTGA-----AAAAAAAAAACTG-T-CCAT-TC---TT----TAAAAGAATG-----GAC--------------------------AGTTC-T------TCAAAAAGAATG-GAC-AGTT--TTTTCA--T-AG-AA----AGACACTT-ACAGGTAA-CTTAATGGA-----TATG-AGTTAGCAACGACAATA--ACCTATAGAATGG-ACAATT-CAAACAAAAGGNTTACGTCAC-AATCATG
gi|1 : A-GTTCTTTTTCCTCC-CA---CAG---A-GT-GAGACAGTTTTTC---GGCCTTTCT--CC-------T
gi|1 : gtaa-TAT-AAACTGT-CCACG---------------TCT--G------TTGA-----AGAGAAAGAACT-----CATCTC---GT----GGACATACCGCCCTCGAC--------------------------AGTTC-TTTTTCCTCCCACAGAGTGAGAC-AGTT--TTTgtcgagggcggtatgtccacgagatgagttctttctcttcaacagacgtggacagtttatacaggcctttctgccctattctaaggagcaatgattttccccttttggtaggatgggattttcagataatggattgtatttgaattcagatagaattgttcaggtcgtcatacatgcaaaagtaaaaatattgtttacagaagaataagaacagtccacataaaagttaaggcgtgtaaattgctggcattttgttaatggctattgtttttataaggatctcacgtggatggctcacacatctacaaagcagcgaagaaacgttacaaggtggcgctttgtttcagactattatacagagtaaggtgtgatgtttttgaatcagttgctaaagttcgaactccttgtaagataagcaagtcttcctcttatggagaaaagcgtactaagtattataactggtcaaaatttaaagaaacctgaatatgcgcaaaatactgatgtgttatataagtgcactttggatctaagaaatggaaaatagtgaaacacaaaataaggacaaattttttacgtagaaagatgggttcattttcgacattttttgaatgaggtactttacatgtacgaatgcctagtcaggatattgaaaaattaattgagcatttttaaaaagccaattgaatcaagagaattaagcaagttactgagaaaggactaaccaaaagaaaacaggaaaggcaaaggtgactatgccattgtttaaagttggtagaaaacaggataaaacatattgggccaaaattcatttggattttttttttttttttttttttttttaccatcacaagatattttgaaaatgaggcgattattcatgggaatgttaaatgaagtgacacaaaatgcagaacaagaggaaaaagtggaaaagtaacgcagctgggactgaaatacatgtatgcactagtgaaattaaaattcaatctggcaatgtttcttttggagttcagttttgaagatacgtttaaattaaatgttgcatttcccatgtatttgttgttttcctccttgggtacattccaattttttacctggcatgtccattgtcttgttttgttttgtcctgtcattctgattgaaaaaaaaacctgttccattcttaaaagaatggaaagttctttcaaaaagaatggacagtttctcttcagaagaatagtcacttacaggtaaattaatgggcagtttgtgagttagcaaccaatacctatagaatggacaattcaaaccaaagggttacgtcacaaatcatgtttttaaatgtacgctatgaagaatgtgt
gi|1 : gtaaaggagaaaggccgCGAGGGCGGTATGTCCACGAGATGA-GTTCTTT---CTCTTCA--ACAG---ACGT-G-GACAGTTTA-TACAGGCCTTTCTGCCC-------TATTCTAAGGAGCAAT-GATTTTC-CCCTTTT-GGTAGGATGGGATTT-TCAGATA-ATGGATTGTATTTGAATTCAGATAGAATTGTTCAGGTCGTCATACAT-GCAAAA---GTA----AAAA-TATTGTTTACAG-AAGAATAAGAACAGTCCACATAAAAGTTAAGGCGTGTAAATTGCTGGCATTTTGTT-AAT-GGCTATTGTTTTTA-----------TAAGGATCTCACGTGGATGGCTCACACATCTACAA-AGCAGCGAAGAAACGTT-ACAAGGTGGCGC-TTTG-----TTTCAGAC-T-AT-TA---TACAGAGTAAGGTGTGATGTTTTTGAA-TCA-GTTGCTAAAGTTCGAACTCCTTGTAA-GATAAGC-AAGTCTTCCTCTTATGGAGAAAAGCGTACTAAGTAT--TATAACT--GGTC-AAAATTTAAAGAAACCTGAATATGCGCAAAA-TACTGATGTGTTAT-A--TA-AGT--GCACTTTGGATCTAAGAAATGGAAAATAGTGAAACACAAAAT-AAGGACAAATTTTTTAC-GTAGAAA-GATGGGTTCATTTT-C-G-ACATTTTTT-GAATGAGGTACTTTACATGTACGAATGCCTAGTCAGGATATTGAAAAATTAATT-GAGC---A--TTTTTAAAAAGCCAATTGAATCAA-GAG-AATTAAGCAAGTTACTG--A-GAAAGGACTAACCAAAAGAAAA-C-AGGAAAGGCAAAG-G-T-GACTA-TGCCATTGTTTA-AAG--TTGGTAG-AAAACAGG-AT-AAAACATATTGGGCC-AAAATTCATTTGGATTTTTTTTTTTTTTTTTTTTTTTTTTACCATC-ACA---AG--ATATTTTGAAAATG-AGG-CGATT-A---TTCATGGGAATGT-TAAATGAA---GTGACACA--AAAT-GCAGAA-CAAGAGGA--AAAAGTGGAAAA-GTAACGCAGCTGGGACTGA---AA-TACATGTATGCACTAGTGAAATTAAAATT-CAATCTGGCAATGTTTCTTTTGGAGTTC---A--GTTTTGAAGATACGTTTAAATTAAATGTTGCA-TTTCCCA---TG--TATTTGTTGTTTTCC------TCCTTGGGTACA-TTCCAATTTTTTA-CCTG-GCA--TGTCC-ATTGTCTTGTTTTGT-TTT-GTCCTGT--CATT----------------CT--G-----ATTG------AAAAAAAAACCTGTT-CCAT-TC----T----TAAAAGAATG-----GAA--------------------------AGTTCTT------TCAAAAAGAATG-GAC-AGTTTCTCTTCA--GAAG-AAT---AGTCACTT-ACAGGTAA-ATTAATGGGCAGTTTGTG-AGTTAGCAAC--CAAT---ACCTATAGAATGG-ACAATT-CAAACCAAAGGGTTACGTCACAAATCATGcaggcctttctgccctattctaaggagcaatgattttccccttttggtaggatgggattttcagataatggattgtatttgaattcagatagaattgttcaggtcgtcatacatgcaaaagtaaaaatattgtttacagaagaataagaacagtccacataaaagttaaggcgtgtaaattgctggcattttgttaatggctattgtttttataaggatctcacgtggatggctcacacatctacaaagcagcgaagaaacgttacaaggtggcgctttgtttcagactattatacagagtaaggtgtgatgtttttgaatcagttgctaaagttcgaactccttgtaagataagcaagtcttcctcttatggagaaaagcgtactaagtattataactggtcaaaatttaaagaaacctgaatatgcgcaaaatactgatgtgttatataagtgcactttggatctaagaaatggaaaatagtgaaacacaaaataaggacaaattttttacgtagaaagatgggttcattttcgacattttttgaatgaggtactttacatgtacgaatgcctagtcaggatattgaaaaattaattgagcatttttaaaaagccaattgaatcaagagaattaagcaagttactgagaaaggactaaccaaaagaaaacaggaaaggcaaaggtgactatgccattgtttaaagttggtagaaaacaggataaaacatattgggccaaaattcatttggattttttttttttttttttttttttttaccatcacaagatattttgaaaatgaggcgattattcatgggaatgttaaatgaagtgacacaaaatgcagaacaagaggaaaaagtggaaaagtaacgcagctgggactgaaatacatgtatgcactagtgaaattaaaattcaatctggcaatgtttcttttggagttcagttttgaagatacgtttaaattaaatgttgcatttcccatgtatttgttgttttcctccttgggtacattccaattttttacctggcatgtccattgtcttgttttgttttgtcctgtcattctgattgaaaaaaaaacctgttccattcttaaaagaatggaaagttctttcaaaaagaatggacagtttctcttcagaagaatagtcacttacaggtaaattaatgggcagtttgtgagttagcaaccaatacctatagaatggacaattcaaaccaaagggttacgtcacaaatcatgtttttaaatgtacgctatgaagaatgtgt
gi|10 : gtaaaggagaaaggccgaaaaactgtctcactctgtgggaggaaaaagaactgtTTCTTT---CTCT-CA---CAG---A-TT-G-GACAGTTTT-C---TGCCTTTCT--CC-------Ttttttaaatgtacgctatgaagaatgtgt
gi|10 : aAAACTG-T-CCAT-TC---TTTCTCTCACAGATTG-----GAC--------------------------AGTTT-T------tggacagtttgtgatctttctcctacttaaaacatgatttctcttttgaaataaagatgtattgtattcagaatgattttttttacaattagcatacat
gi|10 : aaggagaaaggcagAGAA-AG---A-AT-G-GACAGTTTG-T---GATCTTTCT--CC-------TACT-TAAA-A-CA-T-GATTT---CTCTTTT-G-----------------AAATA-A-AGAT-GTATT-GTATTCAGAATG-ATTTTT-------TT-----T-ACAATgtgatctttctcctacttaaaacatgatttctcttttgaaataaagatgtattgtattcagaatgattttttttacaattagcatacat
gi|11 : aaggagaaaggcagaaaactgtccaatctgtgagA--ACCTATAGAATGG-ACAATT-CAAACAAAAGAACTACGTCAC-AGTCATGtagcatacat
gi|11 : A-GTTCTTT---CTC------ACAG---A-AT-G-GACAGTTTG-A---GACTTTTatttaaaagtctcaaactgtccattctgtgagaaagaactactgccgtcgattagtcctt
gi|12 : aacctatagaatggacaattcaaacaaaagaactacgtcacagtcatgatttGAA-AG---A-AT-G-GACAGTT-G-T---GATCTTTCT--CC-------TACTCTAAAGAACA-T-GATTTTC--TCTTTT-G-----------------AAATATA-AGAT-GTATT-GTATTAAAGAGGTTTTTTT-------TT-----T-ACAATA---GCA----actgccgtcgattagtcctt
gi|13 : ATCA-GTTCTTT---CTCT----GACAT---A-AT-A-GACAGTTTT-C---GGCTTCTAT--CT-------TA
gi|14 : gtaattCCTTGGGTACA-TTCCAA-TCTTTA-CCTG-ACA-CCGTCT-AT--GCT--CTTTGgggggttgagaccagttgtttctttcacagaatg
gi|15 : ----AGACACTT-ACAGGTAA-CTTAATG-------------CTTAGC-ACGACAATA--ACCTATA
gi|16 : -TGCCATTGTTTA-AAG-TTTGGTAGCAAAACAGAAAA-AAAA
gi|2 : CGAGGTCTGTAGGCT---GAGATGACGTTCTTT----TCT-CAGAACAG---A-ATTG-GACAATT-A-A---AGCCTTTCT--CC-------TACT-TAAA---CA-T-TATTTTC-TTTTTTTTGG---GATGGA---T-TCAAATA-A-AGAT-GTATT-GTATTCAGAATGAATTGTT-------TC-----T-GCAATA---GTA----AAATTCTTTGTGCACAG-AA---TAG--ACAGTC-ACAGGTAAGTTAAGG-GTGC----T-CTGGCATTTTGTTTA-T-G-CTATTGTTCT-ATAAAAAAAAAAGAA-GAT------------GCT-ACAC-T-TACAA-A---GCATGGAAGC-TT-ACA-GGTGG-GC-TT-G-----T--CAATTAT-ATATA---TACA-AGT---GTGTGATGTTTCTGA--TCAAGTTG--AAAGTTCG---CCTTTGTAAAGATAAGCCATGTAATC-TCTTATGTA-AAAA-CGT-TT--TT-T--T-CAACTT-GGTCGAAAATTTAAAGAA---------TGCGCAAAAATACTAATG-GT-AT-ACTTAAAGTTGACACTTTGGATCTAG-AAATGGAAAAT-AGGAAACACAAAATCAAGGA-AAATTTTTTAC-GTG--AA-GTTGTGTTCATTTTTC-G-ACATTTTTTTGAATGAGGAACTT-------ACGAATGC-TAGTCAGGATATTGAAAA-T--ATT-GAGC---ACTTTTTTATA---CCA-TTGAATCAG-AGG-AATTAAACAAGTT--TGAAAGAAAAGGACTAAC--AAGAAAAA-CAAGGAAAGGCAACA-GTT-GGCTA-TGTCATTGTTTA-AAGATTTGGTAGCAAAACAGAAAA-AAAACATATTGGGGAAAAAATTTATTTGGATT-----------------------T-C-ATCAACAAG-AG--ATATTTCGCAAATGAA-G-CGATTAA---TTCATGGAAATGT-TAGATGAA---GTGACACA--AAAT-GCAGAG-CAAGAGAA--GAAAGT-TAAAA-GTA-CA-----GGGACTGG---AA-TAC-------CAC-AGTG-AATTAAAATC-AAATCTGGCAATTTTCT-TTTGGAGTTC--AATTTTTTTGAAGATATG--TAAATTAAATGTTGCA-TTT--CA---TG--TATTTGTT-TTTCCC------CCCTTGGGTACA-TTCCAA-T-TTTA-CCTG-ACA-CCGTCTAAT--GCT--CTTTGT-TGTAAAACTGT-TCATT---------------CCT--G-----ATTGA-----AAAAAAAAAACTC-T-CCAT-TC---TT----TAAAAGCATG-----AAC--------------------------AGTTC-T------TCATAAAGAATG-GACAAGTT--TTTTCAAGA-AG-AA----AGACACTTAACAGGTAA-TTTAATGAAGTT--TGTG-AGTTAGCAACGACAATA--ACCTATAGAATGGAACAATT-CAAA-AAAATATTTACGTCAC-AATCATGa
gi|3 : AAGAAATG-GAC-AGTT--TTTTTA--C-AGTAAGAATAGACACTT-ACAGGTAAGCTTAAC----------TG--CTTAGGCACGAC-ATA--ACCTATAAGATG
gi|3 : tgT-TACAGTA--AGAATAGACAC-TT-ACA-GGTAA-GC-TT-AACTGCT--TAGGCACGACATAACCTATA-AG----ATGTGATGTTTCTGAAATCATGTTG--AAAGTTCG---CCTTTGTAA-GATAAGC-ATGTCTTCCTCTTATGGAGAAAA-------AATT-TTCT-TAACTTTGGTTCAAATTTCAAAGAAA--TGAATATGCGCAAAAATACTGA-G-G-TATAACTTAGTGT--ACACTTT-GATCTAC-GAATGGAAAATGATGAACCACAAAAT-AAGGA-AAATCTTTTACAGTG--AACGATGGGTTTA--TT-CGG-ACACTTTT--GACTGAGGAAACT-------ACGAAT-C-TAGTCAGGATATTGAAAAAT--ATTAAAGCAAAACTTTTTAAAA---ACA-TTGAATCACTGAG-AATTAAACAAGTTACTG--AG--AAAGACTAAC--AAAAAAAATCAAGGAAAGACTAAG-GTTGGGCTAGTGCCATTGTTTATAAGTTTGGGTAGCAAAGCAGGAAATAAAACA-AATGGGCACAAAATTCCTTTGGATT-----------------------TAC-ATC-ACAAGAAGTTATATTTT-AAAATG-A-GCCGATT-ATAGTTCATGGGAATGTGTAAGTGAAAATGTGACAAC--AAATGGCAGAGACAAAAGAA--AAAGAT-GAAAAGGTACCA-----GGGGCTGAGTCAA-TAC-------CACTAG-GAAA-TAAAATCAAAATCTGGCAATG-TTC-TTTGGAATTTCAAA--GTTTTGAAGATATG--T--ATTAAATGTTGCATTTT--CAGTCTG--TA-TTGTTGTTTTCC------CTCTTGGGTACATTTCCAA-T-TTTA-CCT--TCC-TTGTCC-AT--TCTG-TTTTGT-TGT-AAACTGTCCCATT----------------CT--G-----ATTG--------AAAAAAACCTG-TCCCAT-TC----T----TAAAAGAAT------GAC--------------------------CGTTC-T------TCAAGAAGAATA-GAC-A------------------------------TT-ACAGGTAA-CTTAA----------ATG--GTTAGCAACAACAATAACACCTATAGAAT-G-ACAATT-CAAtgatgtttctgaaatcatgttgaaagttcgcctttgtaagataagcatgtcttcctcttatggagaaaaaattttcttaactttggttcaaatttcaaagaaatgaatatgcgcaaaaatactgaggtataacttagtgtacactttgatctacgaatggaaaatgatgaaccacaaaataaggaaaatcttttacagtgaacgatgggtttattcggacacttttgactgaggaaactacgaatctagtcaggatattgaaaaatattaaagcaaaactttttaaaaacattgaatcactgagaattaaacaagttactgagaaagactaacaaaaaaaatcaaggaaagactaaggttgggctagtgccattgtttataagtttgggtagcaaagcaggaaataaaacaaatgggcacaaaattcctttggatttacatcacaagaagttatattttaaaatgagccgattatagttcatgggaatgtgtaagtgaaaatgtgacaacaaatggcagagacaaaagaaaaagatgaaaaggtaccaggggctgagtcaataccactaggaaataaaatcaaaatctggcaatgttctttggaatttcaaagttttgaagatatgtattaaatgttgcattttcagtctgtattgttgttttccctcttgggtacatttccaattttaccttccttgtccattctgttttgttgtaaactgtcccattctgattgaaaaaaacctgtcccattcttaaaagaatgaccgttcttcaagaagaatagacattacaggtaacttaaatggttagcaacaacaataacacctatagaatgacaattcaaca
gi|4 : tgaagaaatggacagtttttACACAGAAT-AAAGA-AAACTT---AC-CTG--AA-GATGGTTTCATTTT-C-GGACATTTCT--GA-TGAGGAACTT-------ATGAATGC-TAGTCAGGATATTGAAAA-T--ATT-GAGC---GCTTTCTTAAA---CCA-TTGAATCAA-GAGGAATTAAACAAGTTACTG--AAGAAA----T--------------CGAGGAATGACAAGG--TG-GGCTA-TGCCATTGTTTT-GAAATT----AGCAAAACAGGAAA-TAAA--TATTGGACCATAA-TTCATTTGGATT-----------------------TAC-ATCA-CAAGAAG--ATATTTTGAAAATA-A------TT-A---TTCATGGGAACGT-TAAATGAA---GTGACACA--AAAT-GCAGAG-GAGGAGAACGAAAAAT-GAAA--GAAACA-----GGGACTGG---AAATAC-------TACTAGTGAAATTAAAATC-AAATCTGGCAATGTTTT-TTAGGAGTTC--AA--GTTTTGAAGATATG--TAAATTAAATGTTGCA-TTT--CA---TGTATATTTGTTG-TTTAC------CCCTTGGGTACA-TTCCAA-ACTTTA-CCTG-GCA-CTGTCC-AT--TCT--GTTTGTGTGT--AACTAT-CCATT----------------CT--GTTT--GTTG-------------TAACTG-T-CCAT-TTTGATT----TAAAAAA-------------------------------------AATT--------------AAGAATG-GAT-AAT----------------------AGACACTT-ACAGGTAA-CTTAATGGA-----C----AGTTAGC-ACAACAATA--ACCTATAGAATGG-ACAATT-CAAACAAAca
gi|5 : TCAGGATATTGAAAA-T--ATT-AAGC---ACTTTTTTAAA---CCA-TTGAATCAA-GAG-AATTAAACAAGTTACTG--AAGAAAGGACTAAC--AAAAAAAAACAAGGAAAGACAAGGAG---GGCTA-TGCCAATGTATA-AAGATT-GGAAGCAAAGCAGGAAA-AAA-CAAATTGGGCCAAAA-TTACTTTGGAAT-----------------------TAC-ATCA-CAAGAAG--ATATTTTGAAAATG-A-G-CGATT-A---TTCATGGGAATGT-TAAATGAA---GTGACACA--AAAT-GCAGAG-CAAAAGAA--AAAGAT-GAAAA-GTACCA-----GGGGCTGGC--AA-TAC-------CACTAGTGAAATTAAAATC-AAATCTGGCAATGTTTC-TTTGGATTTC--AA--GTTTTGAAGATATG--TAAATTAAATGTTGCA-TTT--CA---TG--TATTTGTTGTTTTCC------CTCTTGGGTACA-TTCCAA-TCTTTAGCCTGTTCATTTTTCC-AT--TCT--GTTGTT-TGT--AACTGT-CCATT----------------CT--G-----ATTG---------AAAAAACCTG-T-CCAT-TC----T----TAAAAGAATG-----CAC--------------------------ATTCT-T------TCAAGAAGAAT-------------------------------AGACACTT-ACA-GTAA-CTTAAT--------T-----GTTAGCAA--ACAATA--ACCTATA-AATGG-ACAATTCCAAACAAt
gi|6 : AAAACAGGAAG-AA-------TG---------TTCATT-AGATT-----------------------TTC-ACCA-TAAGAAG--GCATTT-AAAAATG-A-A-TGATT-A---TTTATAGGAATAT-GAAATGTA---GAGACACACAAAAT-ACAGAG-GAAGAGAA--ACGAGT-GAAG--GTACCA-----GGGACTGG---AAACAT-------CACTAATGGAACCAAAATC-AAATCTGGCGATGTGTC-CTTCGAGTTC--AA--GTTTTGAAGATACG--TAAACTAAATG----------------------TTTGTTGCCCCCCCCCCCTCCCTTGGGTACA-CTGCAA-TCTTTA-CATG-GCA-CTTTCTAAT--TCT--ATTTGT-TGT--AATTGT-CCATCATACATGTACCCCCACCTCAGAGAATATTGAGAGAGAAAAAAACAACTG-T-CCAT-TC---TT-------AATAATG-----GAC--------------------------AGTTC-T------TAAAAAAGAATA-GAC-ACTT--tta
gi|7 : GCCC--TCGATCA-GTTCTTT---CTCT-CA---CAG---A-AT-G-GACAGTTTT-C---GGCCTTTCT--CC-------a
gi|7 : AAAACTG-T-CCAT-TC---TG----TGAGAGAAAG-----AACTGATCGAGGGCGGTAGGCCCGAGATGAGTTC-TTTC---TCAGACAGAATG-GAC-AATT--Tggtaggcccgagatgagttctttctcagacagaatggacaatttaaagcctttctcctacttaaaacattattttccttttttgggatggattcaaataaagatgtattgtattcagaatgaattgtttctgcaatagtaaaatctttgtgcacagaatagacagtcacaggtaagttaagggtgctctgcattttgtttaatggctattgttctagaagatgctacacattacaaaagcatggaagcttacaggtgggctttgtcttatatatatacaagtgtgtgatgtttctgaatcagttgaaagttcgccattgtaagataagcatgt
gi|7 : ggagaaaggccgCGAGGGCGGTAGGCCC--GAGATGA-GTTCTTT---CTC---AGA-CAG---A-AT-G-GACAATTTA-A---AGCCTTTCT--CC-------TACT-TAAA-A-CA-T-TATTTTC-CTTTTTT-GG---GATGGA---T-TCAAATA-A-AGAT-GTATT-GTATTCAGAATGAATTGTT-------TC-----T-GCAATA---GTA----AAAT-CTTTGTGCACAG-AA---TAG--ACAGTC-ACAGGTAAGTTAAGG-GTGC----T-CT-GCATTTTGTTTAATGG-CTATTGTTCT-A-----------GAA-GAT------------GCT-ACACAT-TACAA-A--AGCATGGAAGC-TT-ACA-GGTGG-GCTTT-G-----T--C--TTAT-ATATA---TACA-AGT---GTGTGATGTTTCTGAA-TCA-GTTG--AAAGTTCG---CCATTGTAA-GATAAGC-ATGTaaagcctttctcctacttaaaacattattttccttttttgggatggattcaaataaagatgtattgtattcagaatgaattgtttctgcaatagtaaaatctttgtgcacagaatagacagtcacaggtaagttaagggtgctctgcattttgtttaatggctattgttctagaagatgctacacattacaaaagcatggaagcttacaggtgggctttgtcttatatatatacaagtgtgtgatgtttctgaatcagttgaaagttcgccattgtaagataagcatgt
gi|8 : ggagaaaggccgaaaactgtccattctgtgagagaaagaactgat---CCCT-C-GATCAGTTCA-AT-G-GACAGTTTT-C---GGCCTTTCT--CC-------T
gi|8 : atgtaaCGAGGGCCGTAGGCCC--GAGATGA-GTTCTTT---TTCT-T---ACAG---A-AT-G-GACAGTTTA-A---GGCCTTTCT--CCTACATTGTACT-TAAA-A-CA-TAAATTTTCATTATTGT-GG---GA-AGA---TGTCAAACA-A-AGAT-GGATT-GTA-TCAGAATTAATTGTT-------CCAGGG-TAGCAATACATGCATAGTAAAT-TATTGTTTACAGTAA---TAG--ACAGTC-ATAGGTAAGTTAGGG-GTGC----T-CCCGCATTTGGTTTAAT-G-GTATTGTCTT-A-----------GAACTAT-------------CT-ACACAT-TACAA-A--AGCATGGAAAC-TTAACA-GGTGG-GC-TT-ccgtaggcccgagatgagttctttttcttacagaatggacagtttaaggcctttctcctacattgtacttaaaacataaattttcattattgtgggaagatgtcaaacaaagatggattgtatcagaattaattgttccagggtagcaatacatgcatagtaaattattgtttacagtaatagacagtcataggtaagttaggggtgctcccgcatttggtttaatggtattgtcttagaactatctacacattacaaaagcatggaaacttaacaggtgggcttttgtc
gi|9 : atgtaaaggagaaaggccgaaaactgtccattgaactgatTTAATGGACAGTTTATGGAGTTACCA-CAACAATA--ACCTATAGAATGG-ACAATT-CAAACAAAAGGTTTACGTCAC-AATCATGttgtc
Alignments
lowQualScore : 11 3333333 111111 1111111 1 111111 11 444444444444444 44444444444444 111 1111 1 1 111 11 1 1 222222 1 1 8888888888888888888888888888 11 1 111 333333333333333333 111 1 2222 11 2 11 111 1 1 55555555555555555 1 1 1 222 1111 1 1 11 11 1 1 1 1 11 1 1 1 1 11 3333333 1 1111 111 111 11111 11 1 22222 1 1 1111 1 66666666666666666666666 22 111 111 111 11 11111 111 1 2222222 111 111111 1 111 11 5555555555555555555555555555555555555555 2222222222222222 111111 222222 888888888888888888888888 7777777777777777777 1
lowQualScore : 1 11 5 777 2222222 555 3 3 3 222222 55 1111111 3 111111 6 77 00 6 111111111111111 6 6 6 6 3 11111111111111 6 444 7777 0 1 1 0 777 33 0 0 222222 8 3 3 0 0 5555555555555555555555555555 22 0 3 8 8 111 8 8 8 8 8 666666666666666666 3 777 0 0000 33 0 33 777 1 0 0 6 6 66666666666666666 3 7 3 3 555 7 7 8888 3 6 2 88 6 44 2 0 0 3 0 33 0 3 0 0 0 33 3 2222222 2 0 0 2222 8 444 444 8 8 8 0 11111 3 0 11 6 3 1 77777 6 6 1 1 5 0000 99 1 11111111111111111111111 3 6 22 3 99 22 6 444 6 111 6 111 99 6 6 99 6 44 6 66666 888 3 1111111 1 1 6 6 99 99 0 99 6 99 111 99 1 999999 5 777 5 77 888 1 77 444 5 66 5 1111111111111111111111111111111111111111 8 4 4 4 5555555555555555 2 444444 4 000000 2 4 4 555555555555555555555555 5 5 7777777777777777777 6 5 66 5 5 1 0
lowQualScore : . .. . ... ....... ... . . . ...... .. ....... . ...... . .. .. . ............... . . . . . .............. . ... .... . . . . ... .. . . ...... . . . . . ............................ .. . . . . ... . . . . . .................. . ... . .... .. . .. ... . . . . . ................. . . . . ... . . .... . . . .. . .. . . . . . .. . . . . . .. . ....... . . . .... . ... ... . . . . ..... . . .. . . . ..... . . . . . .... .. . ....................... . . .. . .. .. . ... . ... . ... .. . . .. . .. . ..... ... . ....... . . . . .. .. . .. . .. ... .. . ...... . ... . .. ... . .. ... . .. . ........................................ . . . . ................ . ...... . ...... . . . ........................ . . ................... . . .. . . . .
lowQualScore : 0 00 0 000 6666666 888 3 3 3 555555 00 8888888 3 000000 7 77 33 7 000000000000000 7 7 7 7 5 33333333333333 7 000 0000 0 0 0 0 555 88 0 0 222222 8 2 2 0 0 5555555555555555555555555555 55 0 2 0 0 888 0 0 0 0 0 222222222222222222 2 555 0 8888 22 0 88 555 2 0 0 7 7 77777777777777777 3 3 3 3 777 3 3 0000 3 7 0 33 7 33 0 0 0 2 0 88 0 2 0 0 0 22 2 5555555 5 0 8 6666 0 000 000 0 0 0 8 66666 2 8 00 0 8 4 22222 7 7 7 3 7 4444 77 3 77777777777777777777777 5 7 88 2 22 77 7 333 7 777 7 777 22 7 7 22 7 00 7 77777 333 3 7777777 7 7 7 7 22 22 7 22 7 22 777 22 7 222222 7 000 7 44 999 4 99 666 7 22 0 4444444444444444444444444444444444444444 9 4 4 4 4444444444444444 0 000000 4 666666 1 4 4 222222222222222222222222 7 7 0000000000000000000 2 4 11 7 7 0 0
consensus : CGAGGGCNGTAGGCCC--GAGATGA-GTTCTTT---CTCT-CAGAACAG---A-AT-G-GACAGTTTN-C---GGCCTTTCT--CC-------TACT-TAA--A--ACA-T-GATTTTC-CTCTTTT-GG---GATGGA---T-TCAAATA-A-AGAT-GTATT-GTATTCAGAATGAATTGTT-------TC-----T-GCAATA---GTA----AAAT-CNTTGTNCACAG-AA---TAG--ACAGTC-ACAGGTAAGTTAAGG-GTGC----T-CTGGCATTTTGTTTAAT-G-CTATTGTTCT----A-----------GAAC--------GATG-CT-ACACAT-TACAA-A--AGCATGGAAAC-TT-ACA-GGTGG-GC-TT-G-----T--CAGNCAT-ATATA---TACA-AGT---GTGTGATGTTTCTGAA-TCA-GTTG--AAAGTTCG---CCTTTGTAA-GATAAGC-ATGTCTTCCTCTTATGGAGAAAA-CGT-CTAATT-T--T-TAAC-TTGGTC-AAAATTT-AAAGAAA--TGAATATGCGCAAAAATACTGATG-GTTAT-ACTTAGAGT--ACACTTTGGATCTAN-AAATGGAAAATGATGAAACACAAAAT-AAGGA-AAATTTTTTAC-GTG--AA-GATGGGTTCATTTT-C-G-ACA-TTTTTTGAATGAGGAACTT-------ACGAATGC-TAGTCAGGATATTGAAAAAT--ATT-GAGC---ACTTTTTTAAA---CCA-TTGAATCAA-GAG-AATTAAACAAGTTACTG--AGGAAAGGACTAAC--AAAAAAAA-CAAGGAAAGACAAGG-GTT-GGCTA-TGCCATTGTTTA-AAGATTTGGTAGCAAAACAGGAAA-AAAACATATTGGGCCAAAAATTCATTTGGATT-----------------------TAC-ATCAACAAGAAG--ATATTTTGAAAATG-A-G-CGATT-A---TTCATGGGAATGT-TAAATGAA---GTGACACA--AAAT-GCAGAG-CAAGAGAA--AAAAGT-GAAAA-GTACCA-----GGGACTGG---AA-TAC-------CACTAGTGAAATTAAAATC-AAATCTGGCAATGTTTC-TTTGGAGTTC--AA--GTTTTGAAGATACG--TAAATTAAATGTTGCA-TTT--CA---TG--TATTTGTTGTTTTCC------CCCTTGGGTACA-TTCCAA-TCTTTA-CCTG-GCA-CCGTCC-AT--TCT--NTTTGT-TGT-AAACTGT-CCAT------------------T-CTG-----ATTGA-----AAAAAAAAAACTG-T-CCA-T-TC---TT----TAA----AAGAATG-----GACAGTTC-T------TCAAAAAGAATG-GAC-AGTT--TTTTC---A-----AGAA-AGACACTT-ACAGGTAA-CTTAATGGA-----T-GT-----GAGTTAGCAACGACAATA--ACCTATAGAATGG-ACAATT-CAAACAAAAGGNTTACGTCAC-AATCATG
Reference ( family-6810 ) : CGAGGGCNGTAGGCCC--GAGATGA-GTTCTTT---CTCT-CAGAACAG---A-AT-G-GACAGTTTN-C---GGCCTTTCT--CC-------TACT-TAA--A--ACA-T-GATTTTC-CTCTTTT-GG---GATGGA---T-TCAAATA-A-AGAT-GTATT-GTATTCAGAATGAATTGTT-------TC-----T-GCAATA---GTA----AAAT-CNTTGTNCACAG-AA---TAG--ACAGTC-ACAGGTAAGTTAAGG-GTGC----T-CTGGCATTTTGTTTAAT-G-CTATTGTTCT----A-----------GAA---------GATG-CT-ACACAT-TACAA-A--AGCATGGAAAC-TT-ACA-GGTGG-GC-TT-G-----T--CAGNCAT-ATATA---TACA-AGT---GTGTGATGTTTCTGAA-TCA-GTTG--AAAGTTCG---CCTTTGTAA-GATAAGC-ATGTCTTCCTCTTATGGAGAAAA-CGT-CTAATT-T--T-TAAC-TTGGTC-AAAATTT-AAAGAAA--TGAATATGCGCAAAAATACTGATG-GTTAT-ACTTAGAGT--ACACTTTGGATCTAN-AAATGGAAAATGATGAAACACAAAAT-AAGGA-AAATTTTTTAC-GTG--AA-GATGGGTTCATTTT-C-G-ACA-TTTTTTGAATGAGGAACTT-------ACGAATGC-TAGTCAGGATATTGAAAAAT--ATT-GAGC---ACTTTTTTAAA---CCA-TTGAATCAA-GAG-AATTAAACAAGTTACTG--AGGAAAGGACTAAC--AAAAAAAA-CAAGGAAAGACAAGG-GTT-GGCTA-TGCCATTGTTTA-AAGATTTGGTAGCAAAACAGGAAA-AAAACATATTGGGCCAAAAATTCATTTGGATT-----------------------TAC-ATCAACAAGAAG--ATATTTTGAAAATG-A-G-CGATT-A---TTCATGGGAATGT-TAAATGAA---GTGACACA--AAAT-GCAGAG-CAAGAGAA--AAAAGT-GAAAA-GTACCA-----GGGACTGG---AA-TAC-------CACTAGTGAAATTAAAATC-AAATCTGGCAATGTTTC-TTTGGAGTTC--AA--GTTTTGAAGATACG--TAAATTAAATGTTGCA-TTT--CA---TG--TATTTGTTGTTTTCC------CCCTTGGGTACA-TTCCAA-TCTTTA-CCTG-GCA-CCGTCC-AT--TCT--NTTTGT-TGT-AAACTGT-CCAT------------------T-CTG-----ATTGA-----AAAAAAAAAACTG-T-CCA-T-TC---TT----TAA----AAGAATG-----GACAGTTC-T------TCAAAAAGAATG-GAC-AGTT--TTTTC---A-----AGAA-AGACACTT-ACAGGTAA-CTTAATGGA-----T-GT-----GAGTTAGCAACGACAATA--ACCTATAGAATGG-ACAATT-CAAACAAAAGGNTTACGTCAC-AATCATG
gi|1 : A-GTTCTTTTTCCTCC-CA---CAG---A-GT-GAGACAGTTTTTC---GGCCTTTCT--CC-------T
gi|1 : gtaa-TAT-AAACTGT-CCACG-----------------T-CTG------TTGA-----AGAGAAAGAACT-----CA-TCTC---GT----GGA----CATACCGCCCTCGACAGTTC-TTTTTCCTCCCACAGAGTGAGAC-AGTT--TTTgtcgagggcggtatgtccacgagatgagttctttctcttcaacagacgtggacagtttatacaggcctttctgccctattctaaggagcaatgattttccccttttggtaggatgggattttcagataatggattgtatttgaattcagatagaattgttcaggtcgtcatacatgcaaaagtaaaaatattgtttacagaagaataagaacagtccacataaaagttaaggcgtgtaaattgctggcattttgttaatggctattgtttttataaggatctcacgtggatggctcacacatctacaaagcagcgaagaaacgttacaaggtggcgctttgtttcagactattatacagagtaaggtgtgatgtttttgaatcagttgctaaagttcgaactccttgtaagataagcaagtcttcctcttatggagaaaagcgtactaagtattataactggtcaaaatttaaagaaacctgaatatgcgcaaaatactgatgtgttatataagtgcactttggatctaagaaatggaaaatagtgaaacacaaaataaggacaaattttttacgtagaaagatgggttcattttcgacattttttgaatgaggtactttacatgtacgaatgcctagtcaggatattgaaaaattaattgagcatttttaaaaagccaattgaatcaagagaattaagcaagttactgagaaaggactaaccaaaagaaaacaggaaaggcaaaggtgactatgccattgtttaaagttggtagaaaacaggataaaacatattgggccaaaattcatttggattttttttttttttttttttttttttaccatcacaagatattttgaaaatgaggcgattattcatgggaatgttaaatgaagtgacacaaaatgcagaacaagaggaaaaagtggaaaagtaacgcagctgggactgaaatacatgtatgcactagtgaaattaaaattcaatctggcaatgtttcttttggagttcagttttgaagatacgtttaaattaaatgttgcatttcccatgtatttgttgttttcctccttgggtacattccaattttttacctggcatgtccattgtcttgttttgttttgtcctgtcattctgattgaaaaaaaaacctgttccattcttaaaagaatggaaagttctttcaaaaagaatggacagtttctcttcagaagaatagtcacttacaggtaaattaatgggcagtttgtgagttagcaaccaatacctatagaatggacaattcaaaccaaagggttacgtcacaaatcatgtttttaaatgtacgctatgaagaatgtgt
gi|1 : gtaaaggagaaaggccgCGAGGGCGGTATGTCCACGAGATGA-GTTCTTT---CTCTTCA--ACAG---ACGT-G-GACAGTTTA-TACAGGCCTTTCTGCCC-------TATTCTAAGGA--GCAAT-GATTTTC-CCCTTTT-GGTAGGATGGGATTT-TCAGATA-ATGGATTGTATTTGAATTCAGATAGAATTGTTCAGGTCGTCATACAT-GCAAAA---GTA----AAAA-TATTGTTTACAG-AAGAATAAGAACAGTCCACATAAAAGTTAAGGCGTGTAAATTGCTGGCATTTTGTT-AAT-GGCTATTGTTTTTATAA-----------GGATCTCACGTGGATGGCTCACACATCTACAA-AGCAGCGAAGAAACGTT-ACAAGGTGGCGC-TTTG-----TTTCAGAC-T-AT-TA---TACAGAGTAAGGTGTGATGTTTTTGAA-TCA-GTTGCTAAAGTTCGAACTCCTTGTAA-GATAAGC-AAGTCTTCCTCTTATGGAGAAAAGCGTACTAAGTAT--TATAAC-T-GGTC-AAAATTT-AAAGAAACCTGAATATGCGCAAAA-TACTGATGTGTTAT-A--TA-AGT--GCACTTTGGATCTAAGAAATGGAAAATAGTGAAACACAAAAT-AAGGACAAATTTTTTAC-GTAGAAA-GATGGGTTCATTTT-C-G-ACA-TTTTTTGAATGAGGTACTTTACATGTACGAATGCCTAGTCAGGATATTGAAAAATTAATT-GAGC---A--TTTTTAAAAAGCCAATTGAATCAA-GAG-AATTAAGCAAGTTACTG--A-GAAAGGACTAACCAAAAGAAAA-C-AGGAAAGGCAAAG-G-T-GACTA-TGCCATTGTTTA-AAG--TTGGTAG-AAAACAGG-AT-AAAACATATTGGGCC-AAAATTCATTTGGATTTTTTTTTTTTTTTTTTTTTTTTTTACCATC-ACA---AG--ATATTTTGAAAATG-AGG-CGATT-A---TTCATGGGAATGT-TAAATGAA---GTGACACA--AAAT-GCAGAA-CAAGAGGA--AAAAGTGGAAAA-GTAACGCAGCTGGGACTGA---AA-TACATGTATGCACTAGTGAAATTAAAATT-CAATCTGGCAATGTTTCTTTTGGAGTTC---A--GTTTTGAAGATACGTTTAAATTAAATGTTGCA-TTTCCCA---TG--TATTTGTTGTTTTCC------TCCTTGGGTACA-TTCCAATTTTTTA-CCTG-GCA--TGTCC-ATTGTCTTGTTTTGT-TTT-GTCCTGT--CAT------------------T-CTG-----ATTG------AAAAAAAAACCTGTT-CCA-T-TC----T----TAA----AAGAATG-----GAAAGTTCTT------TCAAAAAGAATG-GAC-AGTTTCTCTTCAG-A-----AGAATAGTCACTT-ACAGGTAA-ATTAATGGGCAGTTT-GT-----GAGTTAGCAAC--CAAT---ACCTATAGAATGG-ACAATT-CAAACCAAAGGGTTACGTCACAAATCATGcaggcctttctgccctattctaaggagcaatgattttccccttttggtaggatgggattttcagataatggattgtatttgaattcagatagaattgttcaggtcgtcatacatgcaaaagtaaaaatattgtttacagaagaataagaacagtccacataaaagttaaggcgtgtaaattgctggcattttgttaatggctattgtttttataaggatctcacgtggatggctcacacatctacaaagcagcgaagaaacgttacaaggtggcgctttgtttcagactattatacagagtaaggtgtgatgtttttgaatcagttgctaaagttcgaactccttgtaagataagcaagtcttcctcttatggagaaaagcgtactaagtattataactggtcaaaatttaaagaaacctgaatatgcgcaaaatactgatgtgttatataagtgcactttggatctaagaaatggaaaatagtgaaacacaaaataaggacaaattttttacgtagaaagatgggttcattttcgacattttttgaatgaggtactttacatgtacgaatgcctagtcaggatattgaaaaattaattgagcatttttaaaaagccaattgaatcaagagaattaagcaagttactgagaaaggactaaccaaaagaaaacaggaaaggcaaaggtgactatgccattgtttaaagttggtagaaaacaggataaaacatattgggccaaaattcatttggattttttttttttttttttttttttttaccatcacaagatattttgaaaatgaggcgattattcatgggaatgttaaatgaagtgacacaaaatgcagaacaagaggaaaaagtggaaaagtaacgcagctgggactgaaatacatgtatgcactagtgaaattaaaattcaatctggcaatgtttcttttggagttcagttttgaagatacgtttaaattaaatgttgcatttcccatgtatttgttgttttcctccttgggtacattccaattttttacctggcatgtccattgtcttgttttgttttgtcctgtcattctgattgaaaaaaaaacctgttccattcttaaaagaatggaaagttctttcaaaaagaatggacagtttctcttcagaagaatagtcacttacaggtaaattaatgggcagtttgtgagttagcaaccaatacctatagaatggacaattcaaaccaaagggttacgtcacaaatcatgtttttaaatgtacgctatgaagaatgtgt
gi|10 : gtaaaggagaaaggccgaaaaactgtctcactctgtgggaggaaaaagaactgtTTCTTT---CTCT-CA---CAG---A-TT-G-GACAGTTTT-C---TGCCTTTCT--CC-------Ttttttaaatgtacgctatgaagaatgtgt
gi|10 : aAAACTG-T-CCA-T-TC---TTTCTCTCA----CAGATTG-----GACAGTTT-T------tggacagtttgtgatctttctcctacttaaaacatgatttctcttttgaaataaagatgtattgtattcagaatgattttttttacaattagcatacat
gi|10 : aaggagaaaggcagAGAA-AG---A-AT-G-GACAGTTTG-T---GATCTTTCT--CC-------TACT-TAA--A--ACA-T-GATTT---CTCTTTT-G-----------------AAATA-A-AGAT-GTATT-GTATTCAGAATG-ATTTTT-------TT-----T-ACAATgtgatctttctcctacttaaaacatgatttctcttttgaaataaagatgtattgtattcagaatgattttttttacaattagcatacat
gi|11 : aaggagaaaggcagaaaactgtccaatctgtgagA--ACCTATAGAATGG-ACAATT-CAAACAAAAGAACTACGTCAC-AGTCATGtagcatacat
gi|11 : A-GTTCTTT---CTC------ACAG---A-AT-G-GACAGTTTG-A---GACTTTTatttaaaagtctcaaactgtccattctgtgagaaagaactactgccgtcgattagtcctt
gi|12 : aacctatagaatggacaattcaaacaaaagaactacgtcacagtcatgatttGAA-AG---A-AT-G-GACAGTT-G-T---GATCTTTCT--CC-------TACTCTAA--AGAACA-T-GATTTTC--TCTTTT-G-----------------AAATATA-AGAT-GTATT-GTATTAAAGAGGTTTTTTT-------TT-----T-ACAATA---GCA----actgccgtcgattagtcctt
gi|13 : ATCA-GTTCTTT---CTCT----GACAT---A-AT-A-GACAGTTTT-C---GGCTTCTAT--CT-------TA
gi|14 : gtaattCCTTGGGTACA-TTCCAA-TCTTTA-CCTG-ACA-CCGTCT-AT--GCT--CTTTGgggggttgagaccagttgtttctttcacagaatg
gi|15 : -AGACACTT-ACAGGTAA-CTTAATG------------------CTTAGC-ACGACAATA--ACCTATA
gi|16 : -TGCCATTGTTTA-AAG-TTTGGTAGCAAAACAGAAAA-AAAA
gi|2 : CGAGGTCTGTAGGCT---GAGATGACGTTCTTT----TCT-CAGAACAG---A-ATTG-GACAATT-A-A---AGCCTTTCT--CC-------TACT-TAA--A---CA-T-TATTTTC-TTTTTTTTGG---GATGGA---T-TCAAATA-A-AGAT-GTATT-GTATTCAGAATGAATTGTT-------TC-----T-GCAATA---GTA----AAATTCTTTGTGCACAG-AA---TAG--ACAGTC-ACAGGTAAGTTAAGG-GTGC----T-CTGGCATTTTGTTTA-T-G-CTATTGTTCT----ATAAAAAAAAAAGAA---------GATG-CT-ACAC-T-TACAA-A---GCATGGAAGC-TT-ACA-GGTGG-GC-TT-G-----T--CAATTAT-ATATA---TACA-AGT---GTGTGATGTTTCTGA--TCAAGTTG--AAAGTTCG---CCTTTGTAAAGATAAGCCATGTAATC-TCTTATGTA-AAAA-CGT-TT--TT-T--T-CAAC-TTGGTCGAAAATTT-AAAGAA---------TGCGCAAAAATACTAATG-GT-AT-ACTTAAAGTTGACACTTTGGATCTAG-AAATGGAAAAT-AGGAAACACAAAATCAAGGA-AAATTTTTTAC-GTG--AA-GTTGTGTTCATTTTTC-G-ACATTTTTTTGAATGAGGAACTT-------ACGAATGC-TAGTCAGGATATTG-AAAAT--ATT-GAGC---ACTTTTTTATA---CCA-TTGAATCAG-AGG-AATTAAACAAGTT--TGAAAGAAAAGGACTAAC--AAGAAAAA-CAAGGAAAGGCAACA-GTT-GGCTA-TGTCATTGTTTA-AAGATTTGGTAGCAAAACAGAAAA-AAAACATATTGGGGAAAAAATTTATTTGGATT-----------------------T-C-ATCAACAAG-AG--ATATTTCGCAAATGAA-G-CGATTAA---TTCATGGAAATGT-TAGATGAA---GTGACACA--AAAT-GCAGAG-CAAGAGAA--GAAAGT-TAAAA-GTA-CA-----GGGACTGG---AA-TAC-------CAC-AGTG-AATTAAAATC-AAATCTGGCAATTTTCT-TTTGGAGTTC--AATTTTTTTGAAGATATG--TAAATTAAATGTTGCA-TTT--CA---TG--TATTTGTT-TTTCCC------CCCTTGGGTACA-TTCCAA-T-TTTA-CCTG-ACA-CCGTCTAAT--GCT--CTTTGT-TGTAAAACTGT-TCAT------------------TCCTG-----ATTGA-----AAAAAAAAAACTC-T-CCA-T-TC---TT----TAA----AAGCATG-----AACAGTTC-T------TCATAAAGAATG-GACAAGTT--TTTTCAAGA-----AGAA-AGACACTTAACAGGTAA-TTTAATGAAGTT--T-GT-----GAGTTAGCAACGACAATA--ACCTATAGAATGGAACAATT-CAAA-AAAATATTTACGTCAC-AATCATGa
gi|3 : AAGAAATG-GAC-AGTT--TTTTT---ACAGTAAGAATAGACACTT-ACAGGTAAGCTTAAC--------T-GC--------TTAGGCACGAC-ATA--ACCTATAAGATG
gi|3 : tgT-TACAGTA--AGAATAGACAC-TT-ACA-GGTAA-GC-TT-AACTGCT--TAGGCACGACATAACCTATA-AG----ATGTGATGTTTCTGAAATCATGTTG--AAAGTTCG---CCTTTGTAA-GATAAGC-ATGTCTTCCTCTTATGGAGAAAA-------AATT-TTCT-TAACTTTGGTT-CAAATTTCAAAGAAA--TGAATATGCGCAAAAATACTGA-G-G-TATAACTTAGTGT--ACACTTT-GATCTAC-GAATGGAAAATGATGAACCACAAAAT-AAGGA-AAATCTTTTACAGTG--AACGATGGGTTTA--TT-CGG-ACA--CTTTTGACTGAGGAAACT-------ACGAAT-C-TAGTCAGGATATTGAAAAAT--ATTAAAGCAAAACTTTTTAAAA---ACA-TTGAATCACTGAG-AATTAAACAAGTTACTG--AG--AAAGACTAAC--AAAAAAAATCAAGGAAAGACTAAG-GTTGGGCTAGTGCCATTGTTTATAAGTTTGGGTAGCAAAGCAGGAAATAAAACA-AATGGGCACAAAATTCCTTTGGATT-----------------------TAC-ATC-ACAAGAAGTTATATTTT-AAAATG-A-GCCGATT-ATAGTTCATGGGAATGTGTAAGTGAAAATGTGACAAC--AAATGGCAGAGACAAAAGAA--AAAGAT-GAAAAGGTACCA-----GGGGCTGAGTCAA-TAC-------CACTAG-GAAA-TAAAATCAAAATCTGGCAATG-TTC-TTTGGAATTTCAAA--GTTTTGAAGATATG--T--ATTAAATGTTGCATTTT--CAGTCTG--TA-TTGTTGTTTTCC------CTCTTGGGTACATTTCCAA-T-TTTA-CCT--TCC-TTGTCC-AT--TCTG-TTTTGT-TGT-AAACTGTCCCAT------------------T-CTG-----ATTG--------AAAAAAACCTG-TCCCA-T-TC----T----TAA----AAGAAT------GACCGTTC-T------TCAAGAAGAATA-GAC-A------------------------------TT-ACAGGTAA-CTTAA---A-----T-G--------GTTAGCAACAACAATAACACCTATAGAAT-G-ACAATT-CAAtgatgtttctgaaatcatgttgaaagttcgcctttgtaagataagcatgtcttcctcttatggagaaaaaattttcttaactttggttcaaatttcaaagaaatgaatatgcgcaaaaatactgaggtataacttagtgtacactttgatctacgaatggaaaatgatgaaccacaaaataaggaaaatcttttacagtgaacgatgggtttattcggacacttttgactgaggaaactacgaatctagtcaggatattgaaaaatattaaagcaaaactttttaaaaacattgaatcactgagaattaaacaagttactgagaaagactaacaaaaaaaatcaaggaaagactaaggttgggctagtgccattgtttataagtttgggtagcaaagcaggaaataaaacaaatgggcacaaaattcctttggatttacatcacaagaagttatattttaaaatgagccgattatagttcatgggaatgtgtaagtgaaaatgtgacaacaaatggcagagacaaaagaaaaagatgaaaaggtaccaggggctgagtcaataccactaggaaataaaatcaaaatctggcaatgttctttggaatttcaaagttttgaagatatgtattaaatgttgcattttcagtctgtattgttgttttccctcttgggtacatttccaattttaccttccttgtccattctgttttgttgtaaactgtcccattctgattgaaaaaaacctgtcccattcttaaaagaatgaccgttcttcaagaagaatagacattacaggtaacttaaatggttagcaacaacaataacacctatagaatgacaattcaaca
gi|4 : tgaagaaatggacagtttttACACAGAAT-AAAGA-AAACTT---AC-CTG--AA-GATGGTTTCATTTT-C-GGACA-TTTCT--GATGAGGAACTT-------ATGAATGC-TAGTCAGGATATTGAAAA-T--ATT-GAGC---GCTTTCTTAAA---CCA-TTGAATCAA-GAGGAATTAAACAAGTTACTG--AAGAAA----T--------------CGAGGAATGACAAGG--TG-GGCTA-TGCCATTGTTTT-GAAATT----AGCAAAACAGGAAA-TAAA--TATTGGACCATAA-TTCATTTGGATT-----------------------TAC-ATCA-CAAGAAG--ATATTTTGAAAATA-A------TT-A---TTCATGGGAACGT-TAAATGAA---GTGACACA--AAAT-GCAGAG-GAGGAGAACGAAAAAT-GAAA--GAAACA-----GGGACTGG---AAATAC-------TACTAGTGAAATTAAAATC-AAATCTGGCAATGTTTT-TTAGGAGTTC--AA--GTTTTGAAGATATG--TAAATTAAATGTTGCA-TTT--CA---TGTATATTTGTTG-TTTAC------CCCTTGGGTACA-TTCCAA-ACTTTA-CCTG-GCA-CTGTCC-AT--TCT--GTTTGTGTGT--AACTAT-CCAT------------------T-CTGTTT--GTTG-------------TAACTG-T-CCA-T-TTTGATT----TAA----AAAA-----------AATT--------------AAGAATG-GAT-AAT----------------------AGACACTT-ACAGGTAA-CTTAATGGA-----C---------AGTTAGC-ACAACAATA--ACCTATAGAATGG-ACAATT-CAAACAAAca
gi|5 : TCAGGATATTGAAAA-T--ATT-AAGC---ACTTTTTTAAA---CCA-TTGAATCAA-GAG-AATTAAACAAGTTACTG--AAGAAAGGACTAAC--AAAAAAAAACAAGGAAAGACAAGGAG---GGCTA-TGCCAATGTATA-AAGATT-GGAAGCAAAGCAGGAAA-AAA-CAAATTGGGCCAAAA-TTACTTTGGAAT-----------------------TAC-ATCA-CAAGAAG--ATATTTTGAAAATG-A-G-CGATT-A---TTCATGGGAATGT-TAAATGAA---GTGACACA--AAAT-GCAGAG-CAAAAGAA--AAAGAT-GAAAA-GTACCA-----GGGGCTGGC--AA-TAC-------CACTAGTGAAATTAAAATC-AAATCTGGCAATGTTTC-TTTGGATTTC--AA--GTTTTGAAGATATG--TAAATTAAATGTTGCA-TTT--CA---TG--TATTTGTTGTTTTCC------CTCTTGGGTACA-TTCCAA-TCTTTAGCCTGTTCATTTTTCC-AT--TCT--GTTGTT-TGT--AACTGT-CCAT------------------T-CTG-----ATTG---------AAAAAACCTG-T-CCA-T-TC----T----TAA----AAGAATG-----CACATTCT-T------TCAAGAAGAAT-------------------------------AGACACTT-ACA-GTAA-CTTAAT--------T----------GTTAGCAA--ACAATA--ACCTATA-AATGG-ACAATTCCAAACAAt
gi|6 : AAAACAGGAAG-AA-------TG---------TTCATT-AGATT-----------------------TTC-ACCA-TAAGAAG--GCATTT-AAAAATG-A-A-TGATT-A---TTTATAGGAATAT-GAAATGTA---GAGACACACAAAAT-ACAGAG-GAAGAGAA--ACGAGT-GAAG--GTACCA-----GGGACTGG---AAACAT-------CACTAATGGAACCAAAATC-AAATCTGGCGATGTGTC-CTTCGAGTTC--AA--GTTTTGAAGATACG--TAAACTAAATG----------------------TTTGTTGCCCCCCCCCCCTCCCTTGGGTACA-CTGCAA-TCTTTA-CATG-GCA-CTTTCTAAT--TCT--ATTTGT-TGT--AATTGT-CCATCATACATGTACCCCCACCT-CAGAGAATATTGAGAGAGAAAAAAACAACTG-T-CCA-T-TC---TT-----------AATAATG-----GACAGTTC-T------TAAAAAAGAATA-GAC-ACTT--tta
gi|7 : GCCC--TCGATCA-GTTCTTT---CTCT-CA---CAG---A-AT-G-GACAGTTTT-C---GGCCTTTCT--CC-------a
gi|7 : -AAACTGT-CCAT------------------T-CTG-------TG------AGAGAAAGAACTGAT-CGAGG-GC---GG----TAGGCCCGAG-ATG--------AGTTC-TTTC---TCAGACAGAATG-GAC-AATT--Tggtaggcccgagatgagttctttctcagacagaatggacaatttaaagcctttctcctacttaaaacattattttccttttttgggatggattcaaataaagatgtattgtattcagaatgaattgtttctgcaatagtaaaatctttgtgcacagaatagacagtcacaggtaagttaagggtgctctgcattttgtttaatggctattgttctagaagatgctacacattacaaaagcatggaagcttacaggtgggctttgtcttatatatatacaagtgtgtgatgtttctgaatcagttgaaagttcgccattgtaagataagcatgt
gi|7 : ggagaaaggccgaCGAGGGCGGTAGGCCC--GAGATGA-GTTCTTT---CTC---AGA-CAG---A-AT-G-GACAATTTA-A---AGCCTTTCT--CC-------TACT-TAA--A--ACA-T-TATTTTC-CTTTTTT-GG---GATGGA---T-TCAAATA-A-AGAT-GTATT-GTATTCAGAATGAATTGTT-------TC-----T-GCAATA---GTA----AAAT-CTTTGTGCACAG-AA---TAG--ACAGTC-ACAGGTAAGTTAAGG-GTGC----T-CT-GCATTTTGTTTAATGG-CTATTGTTCT----A-----------GAA---------GATG-CT-ACACAT-TACAA-A--AGCATGGAAGC-TT-ACA-GGTGG-GCTTT-G-----T--C--TTAT-ATATA---TACA-AGT---GTGTGATGTTTCTGAA-TCA-GTTG--AAAGTTCG---CCATTGTAA-GATAAGC-ATGTaaagcctttctcctacttaaaacattattttccttttttgggatggattcaaataaagatgtattgtattcagaatgaattgtttctgcaatagtaaaatctttgtgcacagaatagacagtcacaggtaagttaagggtgctctgcattttgtttaatggctattgttctagaagatgctacacattacaaaagcatggaagcttacaggtgggctttgtcttatatatatacaagtgtgtgatgtttctgaatcagttgaaagttcgccattgtaagataagcatgt
gi|8 : ggagaaaggccgaaaactgtccattctgtgagagaaagaactgat---CCCT-C-GATCAGTTCA-AT-G-GACAGTTTT-C---GGCCTTTCT--CC-------T
gi|8 : atgtaaCGAGGGCCGTAGGCCC--GAGATGA-GTTCTTT---TTCT-T---ACAG---A-AT-G-GACAGTTTA-A---GGCCTTTCT--CCTACATTGTACT-TAA--A--ACA-TAAATTTTCATTATTGT-GG---GA-AGA---TGTCAAACA-A-AGAT-GGATT-GTA-TCAGAATTAATTGTT-------CCAGGG-TAGCAATACATGCATAGTAAAT-TATTGTTTACAGTAA---TAG--ACAGTC-ATAGGTAAGTTAGGG-GTGC----T-CCCGCATTTGGTTTAAT-G-GTATTGTCTT----A-----------GAAC--------TAT--CT-ACACAT-TACAA-A--AGCATGGAAAC-TTAACA-GGTGG-GC-TT-ccgtaggcccgagatgagttctttttcttacagaatggacagtttaaggcctttctcctacattgtacttaaaacataaattttcattattgtgggaagatgtcaaacaaagatggattgtatcagaattaattgttccagggtagcaatacatgcatagtaaattattgtttacagtaatagacagtcataggtaagttaggggtgctcccgcatttggtttaatggtattgtcttagaactatctacacattacaaaagcatggaaacttaacaggtgggcttttgtc
gi|9 : atgtaaaggagaaaggccgaaaactgtccattgaactgatTTAATGGA-----CAGTTTATGGAGTTACCA-CAACAATA--ACCTATAGAATGG-ACAATT-CAAACAAAAGGTTTACGTCAC-AATCATGttgtc
Alignments
lowQualScore : 11 3333333 111111 1111111 1 111111 11 444444444444444 44444444444444 111 1111 1 1 111 11 1 1 222222 1 1 888888888888888888888888888888888 1 111 333333333333333333 111 1 2222 11 2 11 111 1 1 55555555555555555 1 1 1 222 1111 1 1 11 11 1 1 1 1 11 1 1 1 1 11 3333333 1 1111 111 111 11111 11 1 22222 1 1 1111 1 66666666666666666666666 22 111 111 111 11 11111 111 1 2222222 111 111111 1 111 11 5555555555555555555555555555555555555555 2222222222222222 111111 222222 888888888888888888888888 7777777777777777777 1
lowQualScore : 1 11 5 777 2222222 555 3 3 3 222222 55 1111111 3 111111 6 77 00 6 111111111111111 6 6 6 6 3 11111111111111 6 444 7777 0 1 1 0 777 33 0 0 222222 8 3 3 0 0 000000000000000000000000000000000 0 3 8 8 111 8 8 8 8 8 666666666666666666 3 777 0 0000 33 0 33 777 1 0 0 6 6 66666666666666666 3 7 3 3 555 7 7 8888 3 6 2 88 6 44 2 0 0 3 0 33 0 3 0 0 0 33 3 2222222 2 0 0 2222 8 444 444 8 8 8 0 11111 3 0 11 6 3 1 77777 6 6 1 1 5 0000 99 1 11111111111111111111111 3 6 22 3 99 22 6 444 6 111 6 111 99 6 6 99 6 44 6 66666 888 3 1111111 1 1 6 6 99 99 0 99 6 99 111 99 1 999999 5 777 5 77 888 1 77 444 5 66 5 1111111111111111111111111111111111111111 8 4 4 4 5555555555555555 2 444444 4 000000 2 4 4 555555555555555555555555 5 5 7777777777777777777 6 5 66 5 5 1 0
lowQualScore : . .. . ... ....... ... . . . ...... .. ....... . ...... . .. .. . ............... . . . . . .............. . ... .... . . . . ... .. . . ...... . . . . . ................................. . . . . ... . . . . . .................. . ... . .... .. . .. ... . . . . . ................. . . . . ... . . .... . . . .. . .. . . . . . .. . . . . . .. . ....... . . . .... . ... ... . . . . ..... . . .. . . . ..... . . . . . .... .. . ....................... . . .. . .. .. . ... . ... . ... .. . . .. . .. . ..... ... . ....... . . . . .. .. . .. . .. ... .. . ...... . ... . .. ... . .. ... . .. . ........................................ . . . . ................ . ...... . ...... . . . ........................ . . ................... . . .. . . . .
lowQualScore : 0 00 0 000 6666666 888 3 3 3 555555 00 8888888 3 000000 7 77 33 7 000000000000000 7 7 7 7 5 33333333333333 7 000 0000 0 0 0 0 555 88 0 0 222222 8 2 2 0 0 000000000000000000000000000000000 0 2 0 0 888 0 0 0 0 0 222222222222222222 2 555 0 8888 22 0 88 555 2 0 0 7 7 77777777777777777 3 3 3 3 777 3 3 0000 3 7 0 33 7 33 0 0 0 2 0 88 0 2 0 0 0 22 2 5555555 5 0 8 6666 0 000 000 0 0 0 8 66666 2 8 00 0 8 4 22222 7 7 7 3 7 4444 77 3 77777777777777777777777 5 7 88 2 22 77 7 333 7 777 7 777 22 7 7 22 7 00 7 77777 333 3 7777777 7 7 7 7 22 22 7 22 7 22 777 22 7 222222 7 000 7 44 999 4 99 666 7 22 0 4444444444444444444444444444444444444444 9 4 4 4 4444444444444444 0 000000 4 666666 1 4 4 222222222222222222222222 7 7 0000000000000000000 2 4 11 7 7 0 0
consensus : CGAGGGCNGTAGGCCC--GAGATGA-GTTCTTT---CTCT-CAGAACAG---A-AT-G-GACAGTTTN-C---GGCCTTTCT--CC-------TACT-TAA--A--ACA-T-GATTTTC-CTCTTTT-GG---GATGGA---T-TCAAATA-A-AGAT-GTATT-GTATTCAGAATGAATTGTT-------TC-----T-GCAATA---GTA----AAAT-CNTTGTNCACAG-AA---TAG--ACAGTC-ACAGGTAAGTTAAGG-GTGC----T-CTGGCATTTTGTTTAAT-G-CTATTGTTCT-A-----------GAA-GAT------------GCT-ACACAT-TACAA-A--AGCATGGAAAC-TT-ACA-GGTGG-GC-TT-G-----T--CAGNCAT-ATATA---TACA-AGT---GTGTGATGTTTCTGAA-TCA-GTTG--AAAGTTCG---CCTTTGTAA-GATAAGC-ATGTCTTCCTCTTATGGAGAAAA-CGT-CTAATT-T--T-TAAC-TTGGTC-AAAATTT-AAAGAAA--TGAATATGCGCAAAAATACTGATG-GTTAT-ACTTAGAGT--ACACTTTGGATCTAN-AAATGGAAAATGATGAAACACAAAAT-AAGGA-AAATTTTTTAC-GTG--AA-GATGGGTTCATTTT-C-G-ACA-TTTTTTGAATGAGGAACTT-------ACGAATGC-TAGTCAGGATATTGAAAAAT--ATT-GAGC---ACTTTTTTAAA---CCA-TTGAATCAA-GAG-AATTAAACAAGTTACTG--AGGAAAGGACTAAC--AAAAAAAA-CAAGGAAAGACAAGG-GTT-GGCTA-TGCCATTGTTTA-AAGATTTGGTAGCAAAACAGGAAA-AAAACATATTGGGCCAAAAATTCATTTGGATT-----------------------TAC-ATCAACAAGAAG--ATATTTTGAAAATG-A-G-CGATT-A---TTCATGGGAATGT-TAAATGAA---GTGACACA--AAAT-GCAGAG-CAAGAGAA--AAAAGT-GAAAA-GTACCA-----GGGACTGG---AA-TAC-------CACTAGTGAAATTAAAATC-AAATCTGGCAATGTTTC-TTTGGAGTTC--AA--GTTTTGAAGATACG--TAAATTAAATGTTGCA-TTT--CA---TG--TATTTGTTGTTTTCC------CCCTTGGGTACA-TTCCAA-TCTTTA-CCTG-GCA-CCGTCC-AT--TCT--NTTTGT-TGT-AAACTGT-CCAT------------------T-CTG-----ATTGA-----AAAAAAAAAACTG-T-CCA-T-TC---TT----TAA----AAGAATG-----GACAGTTC-T------TCAAAAAGAATG-GAC-AGTT--TTTTC---A-----AGAA-AGACACTT-ACAGGTAA-CTTAATGGA-----T-GT-----GAGTTAGCAACGACAATA--ACCTATAGAATGG-ACAATT-CAAACAAAAGGNTTACGTCAC-AATCATG
Reference ( family-6810 ) : CGAGGGCNGTAGGCCC--GAGATGA-GTTCTTT---CTCT-CAGAACAG---A-AT-G-GACAGTTTN-C---GGCCTTTCT--CC-------TACT-TAA--A--ACA-T-GATTTTC-CTCTTTT-GG---GATGGA---T-TCAAATA-A-AGAT-GTATT-GTATTCAGAATGAATTGTT-------TC-----T-GCAATA---GTA----AAAT-CNTTGTNCACAG-AA---TAG--ACAGTC-ACAGGTAAGTTAAGG-GTGC----T-CTGGCATTTTGTTTAAT-G-CTATTGTTCT-A-----------GAACGAT------------GCT-ACACAT-TACAA-A--AGCATGGAAAC-TT-ACA-GGTGG-GC-TT-G-----T--CAGNCAT-ATATA---TACA-AGT---GTGTGATGTTTCTGAA-TCA-GTTG--AAAGTTCG---CCTTTGTAA-GATAAGC-ATGTCTTCCTCTTATGGAGAAAA-CGT-CTAATT-T--T-TAAC-TTGGTC-AAAATTT-AAAGAAA--TGAATATGCGCAAAAATACTGATG-GTTAT-ACTTAGAGT--ACACTTTGGATCTAN-AAATGGAAAATGATGAAACACAAAAT-AAGGA-AAATTTTTTAC-GTG--AA-GATGGGTTCATTTT-C-G-ACA-TTTTTTGAATGAGGAACTT-------ACGAATGC-TAGTCAGGATATTGAAAAAT--ATT-GAGC---ACTTTTTTAAA---CCA-TTGAATCAA-GAG-AATTAAACAAGTTACTG--AGGAAAGGACTAAC--AAAAAAAA-CAAGGAAAGACAAGG-GTT-GGCTA-TGCCATTGTTTA-AAGATTTGGTAGCAAAACAGGAAA-AAAACATATTGGGCCAAAAATTCATTTGGATT-----------------------TAC-ATCAACAAGAAG--ATATTTTGAAAATG-A-G-CGATT-A---TTCATGGGAATGT-TAAATGAA---GTGACACA--AAAT-GCAGAG-CAAGAGAA--AAAAGT-GAAAA-GTACCA-----GGGACTGG---AA-TAC-------CACTAGTGAAATTAAAATC-AAATCTGGCAATGTTTC-TTTGGAGTTC--AA--GTTTTGAAGATACG--TAAATTAAATGTTGCA-TTT--CA---TG--TATTTGTTGTTTTCC------CCCTTGGGTACA-TTCCAA-TCTTTA-CCTG-GCA-CCGTCC-AT--TCT--NTTTGT-TGT-AAACTGT-CCAT------------------T-CTG-----ATTGA-----AAAAAAAAAACTG-T-CCA-T-TC---TT----TAA----AAGAATG-----GACAGTTC-T------TCAAAAAGAATG-GAC-AGTT--TTTTC---A-----AGAA-AGACACTT-ACAGGTAA-CTTAATGGA-----T-GT-----GAGTTAGCAACGACAATA--ACCTATAGAATGG-ACAATT-CAAACAAAAGGNTTACGTCAC-AATCATG
gi|1 : A-GTTCTTTTTCCTCC-CA---CAG---A-GT-GAGACAGTTTTTC---GGCCTTTCT--CC-------T
gi|1 : gtaa-TAT-AAACTGT-CCACG-----------------T-CTG------TTGA-----AGAGAAAGAACT-----CA-TCTC---GT----GGA----CATACCGCCCTCGACAGTTC-TTTTTCCTCCCACAGAGTGAGAC-AGTT--TTTgtcgagggcggtatgtccacgagatgagttctttctcttcaacagacgtggacagtttatacaggcctttctgccctattctaaggagcaatgattttccccttttggtaggatgggattttcagataatggattgtatttgaattcagatagaattgttcaggtcgtcatacatgcaaaagtaaaaatattgtttacagaagaataagaacagtccacataaaagttaaggcgtgtaaattgctggcattttgttaatggctattgtttttataaggatctcacgtggatggctcacacatctacaaagcagcgaagaaacgttacaaggtggcgctttgtttcagactattatacagagtaaggtgtgatgtttttgaatcagttgctaaagttcgaactccttgtaagataagcaagtcttcctcttatggagaaaagcgtactaagtattataactggtcaaaatttaaagaaacctgaatatgcgcaaaatactgatgtgttatataagtgcactttggatctaagaaatggaaaatagtgaaacacaaaataaggacaaattttttacgtagaaagatgggttcattttcgacattttttgaatgaggtactttacatgtacgaatgcctagtcaggatattgaaaaattaattgagcatttttaaaaagccaattgaatcaagagaattaagcaagttactgagaaaggactaaccaaaagaaaacaggaaaggcaaaggtgactatgccattgtttaaagttggtagaaaacaggataaaacatattgggccaaaattcatttggattttttttttttttttttttttttttaccatcacaagatattttgaaaatgaggcgattattcatgggaatgttaaatgaagtgacacaaaatgcagaacaagaggaaaaagtggaaaagtaacgcagctgggactgaaatacatgtatgcactagtgaaattaaaattcaatctggcaatgtttcttttggagttcagttttgaagatacgtttaaattaaatgttgcatttcccatgtatttgttgttttcctccttgggtacattccaattttttacctggcatgtccattgtcttgttttgttttgtcctgtcattctgattgaaaaaaaaacctgttccattcttaaaagaatggaaagttctttcaaaaagaatggacagtttctcttcagaagaatagtcacttacaggtaaattaatgggcagtttgtgagttagcaaccaatacctatagaatggacaattcaaaccaaagggttacgtcacaaatcatgtttttaaatgtacgctatgaagaatgtgt
gi|1 : gtaaaggagaaaggccgCGAGGGCGGTATGTCCACGAGATGA-GTTCTTT---CTCTTCA--ACAG---ACGT-G-GACAGTTTA-TACAGGCCTTTCTGCCC-------TATTCTAAGGA--GCAAT-GATTTTC-CCCTTTT-GGTAGGATGGGATTT-TCAGATA-ATGGATTGTATTTGAATTCAGATAGAATTGTTCAGGTCGTCATACAT-GCAAAA---GTA----AAAA-TATTGTTTACAG-AAGAATAAGAACAGTCCACATAAAAGTTAAGGCGTGTAAATTGCTGGCATTTTGTT-AAT-GGCTATTGTTTTTA-----------TAAGGATCTCACGTGGATGGCTCACACATCTACAA-AGCAGCGAAGAAACGTT-ACAAGGTGGCGC-TTTG-----TTTCAGAC-T-AT-TA---TACAGAGTAAGGTGTGATGTTTTTGAA-TCA-GTTGCTAAAGTTCGAACTCCTTGTAA-GATAAGC-AAGTCTTCCTCTTATGGAGAAAAGCGTACTAAGTAT--TATAAC-T-GGTC-AAAATTT-AAAGAAACCTGAATATGCGCAAAA-TACTGATGTGTTAT-A--TA-AGT--GCACTTTGGATCTAAGAAATGGAAAATAGTGAAACACAAAAT-AAGGACAAATTTTTTAC-GTAGAAA-GATGGGTTCATTTT-C-G-ACA-TTTTTTGAATGAGGTACTTTACATGTACGAATGCCTAGTCAGGATATTGAAAAATTAATT-GAGC---A--TTTTTAAAAAGCCAATTGAATCAA-GAG-AATTAAGCAAGTTACTG--A-GAAAGGACTAACCAAAAGAAAA-C-AGGAAAGGCAAAG-G-T-GACTA-TGCCATTGTTTA-AAG--TTGGTAG-AAAACAGG-AT-AAAACATATTGGGCC-AAAATTCATTTGGATTTTTTTTTTTTTTTTTTTTTTTTTTACCATC-ACA---AG--ATATTTTGAAAATG-AGG-CGATT-A---TTCATGGGAATGT-TAAATGAA---GTGACACA--AAAT-GCAGAA-CAAGAGGA--AAAAGTGGAAAA-GTAACGCAGCTGGGACTGA---AA-TACATGTATGCACTAGTGAAATTAAAATT-CAATCTGGCAATGTTTCTTTTGGAGTTC---A--GTTTTGAAGATACGTTTAAATTAAATGTTGCA-TTTCCCA---TG--TATTTGTTGTTTTCC------TCCTTGGGTACA-TTCCAATTTTTTA-CCTG-GCA--TGTCC-ATTGTCTTGTTTTGT-TTT-GTCCTGT--CAT------------------T-CTG-----ATTG------AAAAAAAAACCTGTT-CCA-T-TC----T----TAA----AAGAATG-----GAAAGTTCTT------TCAAAAAGAATG-GAC-AGTTTCTCTTCAG-A-----AGAATAGTCACTT-ACAGGTAA-ATTAATGGGCAGTTT-GT-----GAGTTAGCAAC--CAAT---ACCTATAGAATGG-ACAATT-CAAACCAAAGGGTTACGTCACAAATCATGcaggcctttctgccctattctaaggagcaatgattttccccttttggtaggatgggattttcagataatggattgtatttgaattcagatagaattgttcaggtcgtcatacatgcaaaagtaaaaatattgtttacagaagaataagaacagtccacataaaagttaaggcgtgtaaattgctggcattttgttaatggctattgtttttataaggatctcacgtggatggctcacacatctacaaagcagcgaagaaacgttacaaggtggcgctttgtttcagactattatacagagtaaggtgtgatgtttttgaatcagttgctaaagttcgaactccttgtaagataagcaagtcttcctcttatggagaaaagcgtactaagtattataactggtcaaaatttaaagaaacctgaatatgcgcaaaatactgatgtgttatataagtgcactttggatctaagaaatggaaaatagtgaaacacaaaataaggacaaattttttacgtagaaagatgggttcattttcgacattttttgaatgaggtactttacatgtacgaatgcctagtcaggatattgaaaaattaattgagcatttttaaaaagccaattgaatcaagagaattaagcaagttactgagaaaggactaaccaaaagaaaacaggaaaggcaaaggtgactatgccattgtttaaagttggtagaaaacaggataaaacatattgggccaaaattcatttggattttttttttttttttttttttttttaccatcacaagatattttgaaaatgaggcgattattcatgggaatgttaaatgaagtgacacaaaatgcagaacaagaggaaaaagtggaaaagtaacgcagctgggactgaaatacatgtatgcactagtgaaattaaaattcaatctggcaatgtttcttttggagttcagttttgaagatacgtttaaattaaatgttgcatttcccatgtatttgttgttttcctccttgggtacattccaattttttacctggcatgtccattgtcttgttttgttttgtcctgtcattctgattgaaaaaaaaacctgttccattcttaaaagaatggaaagttctttcaaaaagaatggacagtttctcttcagaagaatagtcacttacaggtaaattaatgggcagtttgtgagttagcaaccaatacctatagaatggacaattcaaaccaaagggttacgtcacaaatcatgtttttaaatgtacgctatgaagaatgtgt
gi|10 : gtaaaggagaaaggccgaaaaactgtctcactctgtgggaggaaaaagaactgtTTCTTT---CTCT-CA---CAG---A-TT-G-GACAGTTTT-C---TGCCTTTCT--CC-------Ttttttaaatgtacgctatgaagaatgtgt
gi|10 : aAAACTG-T-CCA-T-TC---TTTCTCTCA----CAGATTG-----GACAGTTT-T------tggacagtttgtgatctttctcctacttaaaacatgatttctcttttgaaataaagatgtattgtattcagaatgattttttttacaattagcatacat
gi|10 : aaggagaaaggcagAGAA-AG---A-AT-G-GACAGTTTG-T---GATCTTTCT--CC-------TACT-TAA--A--ACA-T-GATTT---CTCTTTT-G-----------------AAATA-A-AGAT-GTATT-GTATTCAGAATG-ATTTTT-------TT-----T-ACAATgtgatctttctcctacttaaaacatgatttctcttttgaaataaagatgtattgtattcagaatgattttttttacaattagcatacat
gi|11 : aaggagaaaggcagaaaactgtccaatctgtgagA--ACCTATAGAATGG-ACAATT-CAAACAAAAGAACTACGTCAC-AGTCATGtagcatacat
gi|11 : A-GTTCTTT---CTC------ACAG---A-AT-G-GACAGTTTG-A---GACTTTTatttaaaagtctcaaactgtccattctgtgagaaagaactactgccgtcgattagtcctt
gi|12 : aacctatagaatggacaattcaaacaaaagaactacgtcacagtcatgatttGAA-AG---A-AT-G-GACAGTT-G-T---GATCTTTCT--CC-------TACTCTAA--AGAACA-T-GATTTTC--TCTTTT-G-----------------AAATATA-AGAT-GTATT-GTATTAAAGAGGTTTTTTT-------TT-----T-ACAATA---GCA----actgccgtcgattagtcctt
gi|13 : ATCA-GTTCTTT---CTCT----GACAT---A-AT-A-GACAGTTTT-C---GGCTTCTAT--CT-------TA
gi|14 : gtaattCCTTGGGTACA-TTCCAA-TCTTTA-CCTG-ACA-CCGTCT-AT--GCT--CTTTGgggggttgagaccagttgtttctttcacagaatg
gi|15 : -AGACACTT-ACAGGTAA-CTTAATG------------------CTTAGC-ACGACAATA--ACCTATA
gi|16 : -TGCCATTGTTTA-AAG-TTTGGTAGCAAAACAGAAAA-AAAA
gi|2 : CGAGGTCTGTAGGCT---GAGATGACGTTCTTT----TCT-CAGAACAG---A-ATTG-GACAATT-A-A---AGCCTTTCT--CC-------TACT-TAA--A---CA-T-TATTTTC-TTTTTTTTGG---GATGGA---T-TCAAATA-A-AGAT-GTATT-GTATTCAGAATGAATTGTT-------TC-----T-GCAATA---GTA----AAATTCTTTGTGCACAG-AA---TAG--ACAGTC-ACAGGTAAGTTAAGG-GTGC----T-CTGGCATTTTGTTTA-T-G-CTATTGTTCT-ATAAAAAAAAAAGAA-GAT------------GCT-ACAC-T-TACAA-A---GCATGGAAGC-TT-ACA-GGTGG-GC-TT-G-----T--CAATTAT-ATATA---TACA-AGT---GTGTGATGTTTCTGA--TCAAGTTG--AAAGTTCG---CCTTTGTAAAGATAAGCCATGTAATC-TCTTATGTA-AAAA-CGT-TT--TT-T--T-CAAC-TTGGTCGAAAATTT-AAAGAA---------TGCGCAAAAATACTAATG-GT-AT-ACTTAAAGTTGACACTTTGGATCTAG-AAATGGAAAAT-AGGAAACACAAAATCAAGGA-AAATTTTTTAC-GTG--AA-GTTGTGTTCATTTTTC-G-ACATTTTTTTGAATGAGGAACTT-------ACGAATGC-TAGTCAGGATATTG-AAAAT--ATT-GAGC---ACTTTTTTATA---CCA-TTGAATCAG-AGG-AATTAAACAAGTT--TGAAAGAAAAGGACTAAC--AAGAAAAA-CAAGGAAAGGCAACA-GTT-GGCTA-TGTCATTGTTTA-AAGATTTGGTAGCAAAACAGAAAA-AAAACATATTGGGGAAAAAATTTATTTGGATT-----------------------T-C-ATCAACAAG-AG--ATATTTCGCAAATGAA-G-CGATTAA---TTCATGGAAATGT-TAGATGAA---GTGACACA--AAAT-GCAGAG-CAAGAGAA--GAAAGT-TAAAA-GTA-CA-----GGGACTGG---AA-TAC-------CAC-AGTG-AATTAAAATC-AAATCTGGCAATTTTCT-TTTGGAGTTC--AATTTTTTTGAAGATATG--TAAATTAAATGTTGCA-TTT--CA---TG--TATTTGTT-TTTCCC------CCCTTGGGTACA-TTCCAA-T-TTTA-CCTG-ACA-CCGTCTAAT--GCT--CTTTGT-TGTAAAACTGT-TCAT------------------TCCTG-----ATTGA-----AAAAAAAAAACTC-T-CCA-T-TC---TT----TAA----AAGCATG-----AACAGTTC-T------TCATAAAGAATG-GACAAGTT--TTTTCAAGA-----AGAA-AGACACTTAACAGGTAA-TTTAATGAAGTT--T-GT-----GAGTTAGCAACGACAATA--ACCTATAGAATGGAACAATT-CAAA-AAAATATTTACGTCAC-AATCATGa
gi|3 : AAGAAATG-GAC-AGTT--TTTTT---ACAGTAAGAATAGACACTT-ACAGGTAAGCTTAAC--------T-GC--------TTAGGCACGAC-ATA--ACCTATAAGATG
gi|3 : tgT-TACAGTA--AGAATAGACAC-TT-ACA-GGTAA-GC-TT-AACTGCT--TAGGCACGACATAACCTATA-AG----ATGTGATGTTTCTGAAATCATGTTG--AAAGTTCG---CCTTTGTAA-GATAAGC-ATGTCTTCCTCTTATGGAGAAAA-------AATT-TTCT-TAACTTTGGTT-CAAATTTCAAAGAAA--TGAATATGCGCAAAAATACTGA-G-G-TATAACTTAGTGT--ACACTTT-GATCTAC-GAATGGAAAATGATGAACCACAAAAT-AAGGA-AAATCTTTTACAGTG--AACGATGGGTTTA--TT-CGG-ACA--CTTTTGACTGAGGAAACT-------ACGAAT-C-TAGTCAGGATATTGAAAAAT--ATTAAAGCAAAACTTTTTAAAA---ACA-TTGAATCACTGAG-AATTAAACAAGTTACTG--AG--AAAGACTAAC--AAAAAAAATCAAGGAAAGACTAAG-GTTGGGCTAGTGCCATTGTTTATAAGTTTGGGTAGCAAAGCAGGAAATAAAACA-AATGGGCACAAAATTCCTTTGGATT-----------------------TAC-ATC-ACAAGAAGTTATATTTT-AAAATG-A-GCCGATT-ATAGTTCATGGGAATGTGTAAGTGAAAATGTGACAAC--AAATGGCAGAGACAAAAGAA--AAAGAT-GAAAAGGTACCA-----GGGGCTGAGTCAA-TAC-------CACTAG-GAAA-TAAAATCAAAATCTGGCAATG-TTC-TTTGGAATTTCAAA--GTTTTGAAGATATG--T--ATTAAATGTTGCATTTT--CAGTCTG--TA-TTGTTGTTTTCC------CTCTTGGGTACATTTCCAA-T-TTTA-CCT--TCC-TTGTCC-AT--TCTG-TTTTGT-TGT-AAACTGTCCCAT------------------T-CTG-----ATTG--------AAAAAAACCTG-TCCCA-T-TC----T----TAA----AAGAAT------GACCGTTC-T------TCAAGAAGAATA-GAC-A------------------------------TT-ACAGGTAA-CTTAA---A-----T-G--------GTTAGCAACAACAATAACACCTATAGAAT-G-ACAATT-CAAtgatgtttctgaaatcatgttgaaagttcgcctttgtaagataagcatgtcttcctcttatggagaaaaaattttcttaactttggttcaaatttcaaagaaatgaatatgcgcaaaaatactgaggtataacttagtgtacactttgatctacgaatggaaaatgatgaaccacaaaataaggaaaatcttttacagtgaacgatgggtttattcggacacttttgactgaggaaactacgaatctagtcaggatattgaaaaatattaaagcaaaactttttaaaaacattgaatcactgagaattaaacaagttactgagaaagactaacaaaaaaaatcaaggaaagactaaggttgggctagtgccattgtttataagtttgggtagcaaagcaggaaataaaacaaatgggcacaaaattcctttggatttacatcacaagaagttatattttaaaatgagccgattatagttcatgggaatgtgtaagtgaaaatgtgacaacaaatggcagagacaaaagaaaaagatgaaaaggtaccaggggctgagtcaataccactaggaaataaaatcaaaatctggcaatgttctttggaatttcaaagttttgaagatatgtattaaatgttgcattttcagtctgtattgttgttttccctcttgggtacatttccaattttaccttccttgtccattctgttttgttgtaaactgtcccattctgattgaaaaaaacctgtcccattcttaaaagaatgaccgttcttcaagaagaatagacattacaggtaacttaaatggttagcaacaacaataacacctatagaatgacaattcaaca
gi|4 : tgaagaaatggacagtttttACACAGAAT-AAAGA-AAACTT---AC-CTG--AA-GATGGTTTCATTTT-C-GGACA-TTTCT--GATGAGGAACTT-------ATGAATGC-TAGTCAGGATATTGAAAA-T--ATT-GAGC---GCTTTCTTAAA---CCA-TTGAATCAA-GAGGAATTAAACAAGTTACTG--AAGAAA----T--------------CGAGGAATGACAAGG--TG-GGCTA-TGCCATTGTTTT-GAAATT----AGCAAAACAGGAAA-TAAA--TATTGGACCATAA-TTCATTTGGATT-----------------------TAC-ATCA-CAAGAAG--ATATTTTGAAAATA-A------TT-A---TTCATGGGAACGT-TAAATGAA---GTGACACA--AAAT-GCAGAG-GAGGAGAACGAAAAAT-GAAA--GAAACA-----GGGACTGG---AAATAC-------TACTAGTGAAATTAAAATC-AAATCTGGCAATGTTTT-TTAGGAGTTC--AA--GTTTTGAAGATATG--TAAATTAAATGTTGCA-TTT--CA---TGTATATTTGTTG-TTTAC------CCCTTGGGTACA-TTCCAA-ACTTTA-CCTG-GCA-CTGTCC-AT--TCT--GTTTGTGTGT--AACTAT-CCAT------------------T-CTGTTT--GTTG-------------TAACTG-T-CCA-T-TTTGATT----TAA----AAAA-----------AATT--------------AAGAATG-GAT-AAT----------------------AGACACTT-ACAGGTAA-CTTAATGGA-----C---------AGTTAGC-ACAACAATA--ACCTATAGAATGG-ACAATT-CAAACAAAca
gi|5 : TCAGGATATTGAAAA-T--ATT-AAGC---ACTTTTTTAAA---CCA-TTGAATCAA-GAG-AATTAAACAAGTTACTG--AAGAAAGGACTAAC--AAAAAAAAACAAGGAAAGACAAGGAG---GGCTA-TGCCAATGTATA-AAGATT-GGAAGCAAAGCAGGAAA-AAA-CAAATTGGGCCAAAA-TTACTTTGGAAT-----------------------TAC-ATCA-CAAGAAG--ATATTTTGAAAATG-A-G-CGATT-A---TTCATGGGAATGT-TAAATGAA---GTGACACA--AAAT-GCAGAG-CAAAAGAA--AAAGAT-GAAAA-GTACCA-----GGGGCTGGC--AA-TAC-------CACTAGTGAAATTAAAATC-AAATCTGGCAATGTTTC-TTTGGATTTC--AA--GTTTTGAAGATATG--TAAATTAAATGTTGCA-TTT--CA---TG--TATTTGTTGTTTTCC------CTCTTGGGTACA-TTCCAA-TCTTTAGCCTGTTCATTTTTCC-AT--TCT--GTTGTT-TGT--AACTGT-CCAT------------------T-CTG-----ATTG---------AAAAAACCTG-T-CCA-T-TC----T----TAA----AAGAATG-----CACATTCT-T------TCAAGAAGAAT-------------------------------AGACACTT-ACA-GTAA-CTTAAT--------T----------GTTAGCAA--ACAATA--ACCTATA-AATGG-ACAATTCCAAACAAt
gi|6 : AAAACAGGAAG-AA-------TG---------TTCATT-AGATT-----------------------TTC-ACCA-TAAGAAG--GCATTT-AAAAATG-A-A-TGATT-A---TTTATAGGAATAT-GAAATGTA---GAGACACACAAAAT-ACAGAG-GAAGAGAA--ACGAGT-GAAG--GTACCA-----GGGACTGG---AAACAT-------CACTAATGGAACCAAAATC-AAATCTGGCGATGTGTC-CTTCGAGTTC--AA--GTTTTGAAGATACG--TAAACTAAATG----------------------TTTGTTGCCCCCCCCCCCTCCCTTGGGTACA-CTGCAA-TCTTTA-CATG-GCA-CTTTCTAAT--TCT--ATTTGT-TGT--AATTGT-CCATCATACATGTACCCCCACCT-CAGAGAATATTGAGAGAGAAAAAAACAACTG-T-CCA-T-TC---TT-----------AATAATG-----GACAGTTC-T------TAAAAAAGAATA-GAC-ACTT--tta
gi|7 : GCCC--TCGATCA-GTTCTTT---CTCT-CA---CAG---A-AT-G-GACAGTTTT-C---GGCCTTTCT--CC-------a
gi|7 : -AAACTGT-CCAT------------------T-CTG-------TG------AGAGAAAGAACTGAT-CGAGG-GC---GG----TAGGCCCGAG-ATG--------AGTTC-TTTC---TCAGACAGAATG-GAC-AATT--Tggtaggcccgagatgagttctttctcagacagaatggacaatttaaagcctttctcctacttaaaacattattttccttttttgggatggattcaaataaagatgtattgtattcagaatgaattgtttctgcaatagtaaaatctttgtgcacagaatagacagtcacaggtaagttaagggtgctctgcattttgtttaatggctattgttctagaagatgctacacattacaaaagcatggaagcttacaggtgggctttgtcttatatatatacaagtgtgtgatgtttctgaatcagttgaaagttcgccattgtaagataagcatgt
gi|7 : ggagaaaggccgaCGAGGGCGGTAGGCCC--GAGATGA-GTTCTTT---CTC---AGA-CAG---A-AT-G-GACAATTTA-A---AGCCTTTCT--CC-------TACT-TAA--A--ACA-T-TATTTTC-CTTTTTT-GG---GATGGA---T-TCAAATA-A-AGAT-GTATT-GTATTCAGAATGAATTGTT-------TC-----T-GCAATA---GTA----AAAT-CTTTGTGCACAG-AA---TAG--ACAGTC-ACAGGTAAGTTAAGG-GTGC----T-CT-GCATTTTGTTTAATGG-CTATTGTTCT-A-----------GAA-GAT------------GCT-ACACAT-TACAA-A--AGCATGGAAGC-TT-ACA-GGTGG-GCTTT-G-----T--C--TTAT-ATATA---TACA-AGT---GTGTGATGTTTCTGAA-TCA-GTTG--AAAGTTCG---CCATTGTAA-GATAAGC-ATGTaaagcctttctcctacttaaaacattattttccttttttgggatggattcaaataaagatgtattgtattcagaatgaattgtttctgcaatagtaaaatctttgtgcacagaatagacagtcacaggtaagttaagggtgctctgcattttgtttaatggctattgttctagaagatgctacacattacaaaagcatggaagcttacaggtgggctttgtcttatatatatacaagtgtgtgatgtttctgaatcagttgaaagttcgccattgtaagataagcatgt
gi|8 : ggagaaaggccgaaaactgtccattctgtgagagaaagaactgat---CCCT-C-GATCAGTTCA-AT-G-GACAGTTTT-C---GGCCTTTCT--CC-------T
gi|8 : atgtaaCGAGGGCCGTAGGCCC--GAGATGA-GTTCTTT---TTCT-T---ACAG---A-AT-G-GACAGTTTA-A---GGCCTTTCT--CCTACATTGTACT-TAA--A--ACA-TAAATTTTCATTATTGT-GG---GA-AGA---TGTCAAACA-A-AGAT-GGATT-GTA-TCAGAATTAATTGTT-------CCAGGG-TAGCAATACATGCATAGTAAAT-TATTGTTTACAGTAA---TAG--ACAGTC-ATAGGTAAGTTAGGG-GTGC----T-CCCGCATTTGGTTTAAT-G-GTATTGTCTT-A-----------GAACTAT-------------CT-ACACAT-TACAA-A--AGCATGGAAAC-TTAACA-GGTGG-GC-TT-ccgtaggcccgagatgagttctttttcttacagaatggacagtttaaggcctttctcctacattgtacttaaaacataaattttcattattgtgggaagatgtcaaacaaagatggattgtatcagaattaattgttccagggtagcaatacatgcatagtaaattattgtttacagtaatagacagtcataggtaagttaggggtgctcccgcatttggtttaatggtattgtcttagaactatctacacattacaaaagcatggaaacttaacaggtgggcttttgtc
gi|9 : atgtaaaggagaaaggccgaaaactgtccattgaactgatTTAATGGA-----CAGTTTATGGAGTTACCA-CAACAATA--ACCTATAGAATGG-ACAATT-CAAACAAAAGGTTTACGTCAC-AATCATGttgtc
Alignments
lowQualScore : 11 3333333 111111 1111111 1 111111 11 444444444444444 44444444444444 111 1111 1 1 111 11 1 1 222222 1 1 8888888888888888888888888888 11 1 111 333333333333333333 111 1 2222 11 2 11 111 1 1 55555555555555555 1 1 1 222 1111 1 1 11 11 1 1 1 1 11 1 1 1 1 11 3333333 1 1111 111 111 11111 11 1 22222 1 1 1111 1 66666666666666666666666 22 111 111 111 11 11111 111 1 2222222 111 111111 1 111 11 5555555555555555555555555555555555555555 2222222222222222 111111 222222 888888888888888888888888 7777777777777777777 1
lowQualScore : 1 11 5 777 2222222 555 3 3 3 222222 55 1111111 3 111111 6 77 00 6 111111111111111 6 6 6 6 3 11111111111111 6 444 7777 0 1 1 0 777 33 0 0 222222 8 3 3 0 0 5555555555555555555555555555 22 0 3 8 8 111 8 8 8 8 8 666666666666666666 3 777 0 0000 33 0 33 777 1 0 0 6 6 66666666666666666 3 7 3 3 555 7 7 8888 3 6 2 88 6 44 2 0 0 3 0 33 0 3 0 0 0 33 3 2222222 2 0 0 2222 8 444 444 8 8 8 0 11111 3 0 11 6 3 1 77777 6 6 1 1 5 0000 99 1 11111111111111111111111 3 6 22 3 99 22 6 444 6 111 6 111 99 6 6 99 6 44 6 66666 888 3 1111111 1 1 6 6 99 99 0 99 6 99 111 99 1 999999 5 777 5 77 888 1 77 444 5 66 5 1111111111111111111111111111111111111111 8 4 4 4 5555555555555555 2 444444 4 000000 2 4 4 555555555555555555555555 5 5 7777777777777777777 6 5 66 5 5 1 0
lowQualScore : . .. . ... ....... ... . . . ...... .. ....... . ...... . .. .. . ............... . . . . . .............. . ... .... . . . . ... .. . . ...... . . . . . ............................ .. . . . . ... . . . . . .................. . ... . .... .. . .. ... . . . . . ................. . . . . ... . . .... . . . .. . .. . . . . . .. . . . . . .. . ....... . . . .... . ... ... . . . . ..... . . .. . . . ..... . . . . . .... .. . ....................... . . .. . .. .. . ... . ... . ... .. . . .. . .. . ..... ... . ....... . . . . .. .. . .. . .. ... .. . ...... . ... . .. ... . .. ... . .. . ........................................ . . . . ................ . ...... . ...... . . . ........................ . . ................... . . .. . . . .
lowQualScore : 0 00 0 000 6666666 888 3 3 3 555555 00 8888888 3 000000 7 77 33 7 000000000000000 7 7 7 7 5 33333333333333 7 000 0000 0 0 0 0 555 88 0 0 222222 8 2 2 0 0 5555555555555555555555555555 55 0 2 0 0 888 0 0 0 0 0 222222222222222222 2 555 0 8888 22 0 88 555 2 0 0 7 7 77777777777777777 3 3 3 3 777 3 3 0000 3 7 0 33 7 33 0 0 0 2 0 88 0 2 0 0 0 22 2 5555555 5 0 8 6666 0 000 000 0 0 0 8 66666 2 8 00 0 8 4 22222 7 7 7 3 7 4444 77 3 77777777777777777777777 5 7 88 2 22 77 7 333 7 777 7 777 22 7 7 22 7 00 7 77777 333 3 7777777 7 7 7 7 22 22 7 22 7 22 777 22 7 222222 7 000 7 44 999 4 99 666 7 22 0 4444444444444444444444444444444444444444 9 4 4 4 4444444444444444 0 000000 4 666666 1 4 4 222222222222222222222222 7 7 0000000000000000000 2 4 11 7 7 0 0
consensus : CGAGGGCNGTAGGCCC--GAGATGA-GTTCTTT---CTCT-CAGAACAG---A-AT-G-GACAGTTTN-C---GGCCTTTCT--CC-------TACT-TAA--A--ACA-T-GATTTTC-CTCTTTT-GG---GATGGA---T-TCAAATA-A-AGAT-GTATT-GTATTCAGAATGAATTGTT-------TC-----T-GCAATA---GTA----AAAT-CNTTGTNCACAG-AA---TAG--ACAGTC-ACAGGTAAGTTAAGG-GTGC----T-CTGGCATTTTGTTTAAT-G-CTATTGTTCT----A-----------GAAC--------GATG-CT-ACACAT-TACAA-A--AGCATGGAAAC-TT-ACA-GGTGG-GC-TT-G-----T--CAGNCAT-ATATA---TACA-AGT---GTGTGATGTTTCTGAA-TCA-GTTG--AAAGTTCG---CCTTTGTAA-GATAAGC-ATGTCTTCCTCTTATGGAGAAAA-CGT-CTAATT-T--T-TAAC-TTGGTC-AAAATTT-AAAGAAA--TGAATATGCGCAAAAATACTGATG-GTTAT-ACTTAGAGT--ACACTTTGGATCTAN-AAATGGAAAATGATGAAACACAAAAT-AAGGA-AAATTTTTTAC-GTG--AA-GATGGGTTCATTTT-C-G-ACA-TTTTTTGAATGAGGAACTT-------ACGAATGC-TAGTCAGGATATTGAAAAAT--ATT-GAGC---ACTTTTTTAAA---CCA-TTGAATCAA-GAG-AATTAAACAAGTTACTG--AGGAAAGGACTAAC--AAAAAAAA-CAAGGAAAGACAAGG-GTT-GGCTA-TGCCATTGTTTA-AAGATTTGGTAGCAAAACAGGAAA-AAAACATATTGGGCCAAAAATTCATTTGGATT-----------------------TAC-ATCAACAAGAAG--ATATTTTGAAAATG-A-G-CGATT-A---TTCATGGGAATGT-TAAATGAA---GTGACACA--AAAT-GCAGAG-CAAGAGAA--AAAAGT-GAAAA-GTACCA-----GGGACTGG---AA-TAC-------CACTAGTGAAATTAAAATC-AAATCTGGCAATGTTTC-TTTGGAGTTC--AA--GTTTTGAAGATACG--TAAATTAAATGTTGCA-TTT--CA---TG--TATTTGTTGTTTTCC------CCCTTGGGTACA-TTCCAA-TCTTTA-CCTG-GCA-CCGTCC-AT--TCT--NTTTGT-TGT-AAACTGT-CCAT------------------T-CTG-----ATTGA-----AAAAAAAAAACTG-T-CCA-T-TC---TT----TAA----AAGAATG-----GACAGTTC-T------TCAAAAAGAATG-GAC-AGTT--TTTTC---A-----AGAA-AGACACTT-ACAGGTAA-CTTAATGGA-----T-GT-----GAGTTAGCAACGACAATA--ACCTATAGAATGG-ACAATT-CAAACAAAAGGNTTACGTCAC-AATCATG
Reference ( family-6810 ) : CGAGGGCNGTAGGCCC--GAGATGA-GTTCTTT---CTCT-CAGAACAG---A-AT-G-GACAGTTTN-C---GGCCTTTCT--CC-------TACT-TAA--A--ACA-T-GATTTTC-CTCTTTT-GG---GATGGA---T-TCAAATA-A-AGAT-GTATT-GTATTCAGAATGAATTGTT-------TC-----T-GCAATA---GTA----AAAT-CNTTGTNCACAG-AA---TAG--ACAGTC-ACAGGTAAGTTAAGG-GTGC----T-CTGGCATTTTGTTTAAT-G-CTATTGTTCT----A-----------GAA---------GATG-CT-ACACAT-TACAA-A--AGCATGGAAAC-TT-ACA-GGTGG-GC-TT-G-----T--CAGNCAT-ATATA---TACA-AGT---GTGTGATGTTTCTGAA-TCA-GTTG--AAAGTTCG---CCTTTGTAA-GATAAGC-ATGTCTTCCTCTTATGGAGAAAA-CGT-CTAATT-T--T-TAAC-TTGGTC-AAAATTT-AAAGAAA--TGAATATGCGCAAAAATACTGATG-GTTAT-ACTTAGAGT--ACACTTTGGATCTAN-AAATGGAAAATGATGAAACACAAAAT-AAGGA-AAATTTTTTAC-GTG--AA-GATGGGTTCATTTT-C-G-ACA-TTTTTTGAATGAGGAACTT-------ACGAATGC-TAGTCAGGATATTGAAAAAT--ATT-GAGC---ACTTTTTTAAA---CCA-TTGAATCAA-GAG-AATTAAACAAGTTACTG--AGGAAAGGACTAAC--AAAAAAAA-CAAGGAAAGACAAGG-GTT-GGCTA-TGCCATTGTTTA-AAGATTTGGTAGCAAAACAGGAAA-AAAACATATTGGGCCAAAAATTCATTTGGATT-----------------------TAC-ATCAACAAGAAG--ATATTTTGAAAATG-A-G-CGATT-A---TTCATGGGAATGT-TAAATGAA---GTGACACA--AAAT-GCAGAG-CAAGAGAA--AAAAGT-GAAAA-GTACCA-----GGGACTGG---AA-TAC-------CACTAGTGAAATTAAAATC-AAATCTGGCAATGTTTC-TTTGGAGTTC--AA--GTTTTGAAGATACG--TAAATTAAATGTTGCA-TTT--CA---TG--TATTTGTTGTTTTCC------CCCTTGGGTACA-TTCCAA-TCTTTA-CCTG-GCA-CCGTCC-AT--TCT--NTTTGT-TGT-AAACTGT-CCAT------------------T-CTG-----ATTGA-----AAAAAAAAAACTG-T-CCA-T-TC---TT----TAA----AAGAATG-----GACAGTTC-T------TCAAAAAGAATG-GAC-AGTT--TTTTC---A-----AGAA-AGACACTT-ACAGGTAA-CTTAATGGA-----T-GT-----GAGTTAGCAACGACAATA--ACCTATAGAATGG-ACAATT-CAAACAAAAGGNTTACGTCAC-AATCATG
gi|1 : A-GTTCTTTTTCCTCC-CA---CAG---A-GT-GAGACAGTTTTTC---GGCCTTTCT--CC-------T
gi|1 : gtaa-TAT-AAACTGT-CCACG-----------------T-CTG------TTGA-----AGAGAAAGAACT-----CA-TCTC---GT----GGA----CATACCGCCCTCGACAGTTC-TTTTTCCTCCCACAGAGTGAGAC-AGTT--TTTgtcgagggcggtatgtccacgagatgagttctttctcttcaacagacgtggacagtttatacaggcctttctgccctattctaaggagcaatgattttccccttttggtaggatgggattttcagataatggattgtatttgaattcagatagaattgttcaggtcgtcatacatgcaaaagtaaaaatattgtttacagaagaataagaacagtccacataaaagttaaggcgtgtaaattgctggcattttgttaatggctattgtttttataaggatctcacgtggatggctcacacatctacaaagcagcgaagaaacgttacaaggtggcgctttgtttcagactattatacagagtaaggtgtgatgtttttgaatcagttgctaaagttcgaactccttgtaagataagcaagtcttcctcttatggagaaaagcgtactaagtattataactggtcaaaatttaaagaaacctgaatatgcgcaaaatactgatgtgttatataagtgcactttggatctaagaaatggaaaatagtgaaacacaaaataaggacaaattttttacgtagaaagatgggttcattttcgacattttttgaatgaggtactttacatgtacgaatgcctagtcaggatattgaaaaattaattgagcatttttaaaaagccaattgaatcaagagaattaagcaagttactgagaaaggactaaccaaaagaaaacaggaaaggcaaaggtgactatgccattgtttaaagttggtagaaaacaggataaaacatattgggccaaaattcatttggattttttttttttttttttttttttttaccatcacaagatattttgaaaatgaggcgattattcatgggaatgttaaatgaagtgacacaaaatgcagaacaagaggaaaaagtggaaaagtaacgcagctgggactgaaatacatgtatgcactagtgaaattaaaattcaatctggcaatgtttcttttggagttcagttttgaagatacgtttaaattaaatgttgcatttcccatgtatttgttgttttcctccttgggtacattccaattttttacctggcatgtccattgtcttgttttgttttgtcctgtcattctgattgaaaaaaaaacctgttccattcttaaaagaatggaaagttctttcaaaaagaatggacagtttctcttcagaagaatagtcacttacaggtaaattaatgggcagtttgtgagttagcaaccaatacctatagaatggacaattcaaaccaaagggttacgtcacaaatcatgtttttaaatgtacgctatgaagaatgtgt
gi|1 : gtaaaggagaaaggccgCGAGGGCGGTATGTCCACGAGATGA-GTTCTTT---CTCTTCA--ACAG---ACGT-G-GACAGTTTA-TACAGGCCTTTCTGCCC-------TATTCTAAGGA--GCAAT-GATTTTC-CCCTTTT-GGTAGGATGGGATTT-TCAGATA-ATGGATTGTATTTGAATTCAGATAGAATTGTTCAGGTCGTCATACAT-GCAAAA---GTA----AAAA-TATTGTTTACAG-AAGAATAAGAACAGTCCACATAAAAGTTAAGGCGTGTAAATTGCTGGCATTTTGTT-AAT-GGCTATTGTTTTTATAA-----------GGATCTCACGTGGATGGCTCACACATCTACAA-AGCAGCGAAGAAACGTT-ACAAGGTGGCGC-TTTG-----TTTCAGAC-T-AT-TA---TACAGAGTAAGGTGTGATGTTTTTGAA-TCA-GTTGCTAAAGTTCGAACTCCTTGTAA-GATAAGC-AAGTCTTCCTCTTATGGAGAAAAGCGTACTAAGTAT--TATAAC-T-GGTC-AAAATTT-AAAGAAACCTGAATATGCGCAAAA-TACTGATGTGTTAT-A--TA-AGT--GCACTTTGGATCTAAGAAATGGAAAATAGTGAAACACAAAAT-AAGGACAAATTTTTTAC-GTAGAAA-GATGGGTTCATTTT-C-G-ACA-TTTTTTGAATGAGGTACTTTACATGTACGAATGCCTAGTCAGGATATTGAAAAATTAATT-GAGC---A--TTTTTAAAAAGCCAATTGAATCAA-GAG-AATTAAGCAAGTTACTG--A-GAAAGGACTAACCAAAAGAAAA-C-AGGAAAGGCAAAG-G-T-GACTA-TGCCATTGTTTA-AAG--TTGGTAG-AAAACAGG-AT-AAAACATATTGGGCC-AAAATTCATTTGGATTTTTTTTTTTTTTTTTTTTTTTTTTACCATC-ACA---AG--ATATTTTGAAAATG-AGG-CGATT-A---TTCATGGGAATGT-TAAATGAA---GTGACACA--AAAT-GCAGAA-CAAGAGGA--AAAAGTGGAAAA-GTAACGCAGCTGGGACTGA---AA-TACATGTATGCACTAGTGAAATTAAAATT-CAATCTGGCAATGTTTCTTTTGGAGTTC---A--GTTTTGAAGATACGTTTAAATTAAATGTTGCA-TTTCCCA---TG--TATTTGTTGTTTTCC------TCCTTGGGTACA-TTCCAATTTTTTA-CCTG-GCA--TGTCC-ATTGTCTTGTTTTGT-TTT-GTCCTGT--CAT------------------T-CTG-----ATTG------AAAAAAAAACCTGTT-CCA-T-TC----T----TAA----AAGAATG-----GAAAGTTCTT------TCAAAAAGAATG-GAC-AGTTTCTCTTCAG-A-----AGAATAGTCACTT-ACAGGTAA-ATTAATGGGCAGTTT-GT-----GAGTTAGCAAC--CAAT---ACCTATAGAATGG-ACAATT-CAAACCAAAGGGTTACGTCACAAATCATGcaggcctttctgccctattctaaggagcaatgattttccccttttggtaggatgggattttcagataatggattgtatttgaattcagatagaattgttcaggtcgtcatacatgcaaaagtaaaaatattgtttacagaagaataagaacagtccacataaaagttaaggcgtgtaaattgctggcattttgttaatggctattgtttttataaggatctcacgtggatggctcacacatctacaaagcagcgaagaaacgttacaaggtggcgctttgtttcagactattatacagagtaaggtgtgatgtttttgaatcagttgctaaagttcgaactccttgtaagataagcaagtcttcctcttatggagaaaagcgtactaagtattataactggtcaaaatttaaagaaacctgaatatgcgcaaaatactgatgtgttatataagtgcactttggatctaagaaatggaaaatagtgaaacacaaaataaggacaaattttttacgtagaaagatgggttcattttcgacattttttgaatgaggtactttacatgtacgaatgcctagtcaggatattgaaaaattaattgagcatttttaaaaagccaattgaatcaagagaattaagcaagttactgagaaaggactaaccaaaagaaaacaggaaaggcaaaggtgactatgccattgtttaaagttggtagaaaacaggataaaacatattgggccaaaattcatttggattttttttttttttttttttttttttaccatcacaagatattttgaaaatgaggcgattattcatgggaatgttaaatgaagtgacacaaaatgcagaacaagaggaaaaagtggaaaagtaacgcagctgggactgaaatacatgtatgcactagtgaaattaaaattcaatctggcaatgtttcttttggagttcagttttgaagatacgtttaaattaaatgttgcatttcccatgtatttgttgttttcctccttgggtacattccaattttttacctggcatgtccattgtcttgttttgttttgtcctgtcattctgattgaaaaaaaaacctgttccattcttaaaagaatggaaagttctttcaaaaagaatggacagtttctcttcagaagaatagtcacttacaggtaaattaatgggcagtttgtgagttagcaaccaatacctatagaatggacaattcaaaccaaagggttacgtcacaaatcatgtttttaaatgtacgctatgaagaatgtgt
gi|10 : gtaaaggagaaaggccgaaaaactgtctcactctgtgggaggaaaaagaactgtTTCTTT---CTCT-CA---CAG---A-TT-G-GACAGTTTT-C---TGCCTTTCT--CC-------Ttttttaaatgtacgctatgaagaatgtgt
gi|10 : aAAACTG-T-CCA-T-TC---TTTCTCTCA----CAGATTG-----GACAGTTT-T------tggacagtttgtgatctttctcctacttaaaacatgatttctcttttgaaataaagatgtattgtattcagaatgattttttttacaattagcatacat
gi|10 : aaggagaaaggcagAGAA-AG---A-AT-G-GACAGTTTG-T---GATCTTTCT--CC-------TACT-TAA--A--ACA-T-GATTT---CTCTTTT-G-----------------AAATA-A-AGAT-GTATT-GTATTCAGAATG-ATTTTT-------TT-----T-ACAATgtgatctttctcctacttaaaacatgatttctcttttgaaataaagatgtattgtattcagaatgattttttttacaattagcatacat
gi|11 : aaggagaaaggcagaaaactgtccaatctgtgagA--ACCTATAGAATGG-ACAATT-CAAACAAAAGAACTACGTCAC-AGTCATGtagcatacat
gi|11 : A-GTTCTTT---CTC------ACAG---A-AT-G-GACAGTTTG-A---GACTTTTatttaaaagtctcaaactgtccattctgtgagaaagaactactgccgtcgattagtcctt
gi|12 : aacctatagaatggacaattcaaacaaaagaactacgtcacagtcatgatttGAA-AG---A-AT-G-GACAGTT-G-T---GATCTTTCT--CC-------TACTCTAA--AGAACA-T-GATTTTC--TCTTTT-G-----------------AAATATA-AGAT-GTATT-GTATTAAAGAGGTTTTTTT-------TT-----T-ACAATA---GCA----actgccgtcgattagtcctt
gi|13 : ATCA-GTTCTTT---CTCT----GACAT---A-AT-A-GACAGTTTT-C---GGCTTCTAT--CT-------TA
gi|14 : gtaattCCTTGGGTACA-TTCCAA-TCTTTA-CCTG-ACA-CCGTCT-AT--GCT--CTTTGgggggttgagaccagttgtttctttcacagaatg
gi|15 : -AGACACTT-ACAGGTAA-CTTAATG------------------CTTAGC-ACGACAATA--ACCTATA
gi|16 : -TGCCATTGTTTA-AAG-TTTGGTAGCAAAACAGAAAA-AAAA
gi|2 : CGAGGTCTGTAGGCT---GAGATGACGTTCTTT----TCT-CAGAACAG---A-ATTG-GACAATT-A-A---AGCCTTTCT--CC-------TACT-TAA--A---CA-T-TATTTTC-TTTTTTTTGG---GATGGA---T-TCAAATA-A-AGAT-GTATT-GTATTCAGAATGAATTGTT-------TC-----T-GCAATA---GTA----AAATTCTTTGTGCACAG-AA---TAG--ACAGTC-ACAGGTAAGTTAAGG-GTGC----T-CTGGCATTTTGTTTA-T-G-CTATTGTTCT----ATAAAAAAAAAAGAA---------GATG-CT-ACAC-T-TACAA-A---GCATGGAAGC-TT-ACA-GGTGG-GC-TT-G-----T--CAATTAT-ATATA---TACA-AGT---GTGTGATGTTTCTGA--TCAAGTTG--AAAGTTCG---CCTTTGTAAAGATAAGCCATGTAATC-TCTTATGTA-AAAA-CGT-TT--TT-T--T-CAAC-TTGGTCGAAAATTT-AAAGAA---------TGCGCAAAAATACTAATG-GT-AT-ACTTAAAGTTGACACTTTGGATCTAG-AAATGGAAAAT-AGGAAACACAAAATCAAGGA-AAATTTTTTAC-GTG--AA-GTTGTGTTCATTTTTC-G-ACATTTTTTTGAATGAGGAACTT-------ACGAATGC-TAGTCAGGATATTG-AAAAT--ATT-GAGC---ACTTTTTTATA---CCA-TTGAATCAG-AGG-AATTAAACAAGTT--TGAAAGAAAAGGACTAAC--AAGAAAAA-CAAGGAAAGGCAACA-GTT-GGCTA-TGTCATTGTTTA-AAGATTTGGTAGCAAAACAGAAAA-AAAACATATTGGGGAAAAAATTTATTTGGATT-----------------------T-C-ATCAACAAG-AG--ATATTTCGCAAATGAA-G-CGATTAA---TTCATGGAAATGT-TAGATGAA---GTGACACA--AAAT-GCAGAG-CAAGAGAA--GAAAGT-TAAAA-GTA-CA-----GGGACTGG---AA-TAC-------CAC-AGTG-AATTAAAATC-AAATCTGGCAATTTTCT-TTTGGAGTTC--AATTTTTTTGAAGATATG--TAAATTAAATGTTGCA-TTT--CA---TG--TATTTGTT-TTTCCC------CCCTTGGGTACA-TTCCAA-T-TTTA-CCTG-ACA-CCGTCTAAT--GCT--CTTTGT-TGTAAAACTGT-TCAT------------------TCCTG-----ATTGA-----AAAAAAAAAACTC-T-CCA-T-TC---TT----TAA----AAGCATG-----AACAGTTC-T------TCATAAAGAATG-GACAAGTT--TTTTCAAGA-----AGAA-AGACACTTAACAGGTAA-TTTAATGAAGTT--T-GT-----GAGTTAGCAACGACAATA--ACCTATAGAATGGAACAATT-CAAA-AAAATATTTACGTCAC-AATCATGa
gi|3 : AAGAAATG-GAC-AGTT--TTTTT---ACAGTAAGAATAGACACTT-ACAGGTAAGCTTAAC--------T-GC--------TTAGGCACGAC-ATA--ACCTATAAGATG
gi|3 : tgT-TACAGTA--AGAATAGACAC-TT-ACA-GGTAA-GC-TT-AACTGCT--TAGGCACGACATAACCTATA-AG----ATGTGATGTTTCTGAAATCATGTTG--AAAGTTCG---CCTTTGTAA-GATAAGC-ATGTCTTCCTCTTATGGAGAAAA-------AATT-TTCT-TAACTTTGGTT-CAAATTTCAAAGAAA--TGAATATGCGCAAAAATACTGA-G-G-TATAACTTAGTGT--ACACTTT-GATCTAC-GAATGGAAAATGATGAACCACAAAAT-AAGGA-AAATCTTTTACAGTG--AACGATGGGTTTA--TT-CGG-ACA--CTTTTGACTGAGGAAACT-------ACGAAT-C-TAGTCAGGATATTGAAAAAT--ATTAAAGCAAAACTTTTTAAAA---ACA-TTGAATCACTGAG-AATTAAACAAGTTACTG--AG--AAAGACTAAC--AAAAAAAATCAAGGAAAGACTAAG-GTTGGGCTAGTGCCATTGTTTATAAGTTTGGGTAGCAAAGCAGGAAATAAAACA-AATGGGCACAAAATTCCTTTGGATT-----------------------TAC-ATC-ACAAGAAGTTATATTTT-AAAATG-A-GCCGATT-ATAGTTCATGGGAATGTGTAAGTGAAAATGTGACAAC--AAATGGCAGAGACAAAAGAA--AAAGAT-GAAAAGGTACCA-----GGGGCTGAGTCAA-TAC-------CACTAG-GAAA-TAAAATCAAAATCTGGCAATG-TTC-TTTGGAATTTCAAA--GTTTTGAAGATATG--T--ATTAAATGTTGCATTTT--CAGTCTG--TA-TTGTTGTTTTCC------CTCTTGGGTACATTTCCAA-T-TTTA-CCT--TCC-TTGTCC-AT--TCTG-TTTTGT-TGT-AAACTGTCCCAT------------------T-CTG-----ATTG--------AAAAAAACCTG-TCCCA-T-TC----T----TAA----AAGAAT------GACCGTTC-T------TCAAGAAGAATA-GAC-A------------------------------TT-ACAGGTAA-CTTAA---A-----T-G--------GTTAGCAACAACAATAACACCTATAGAAT-G-ACAATT-CAAtgatgtttctgaaatcatgttgaaagttcgcctttgtaagataagcatgtcttcctcttatggagaaaaaattttcttaactttggttcaaatttcaaagaaatgaatatgcgcaaaaatactgaggtataacttagtgtacactttgatctacgaatggaaaatgatgaaccacaaaataaggaaaatcttttacagtgaacgatgggtttattcggacacttttgactgaggaaactacgaatctagtcaggatattgaaaaatattaaagcaaaactttttaaaaacattgaatcactgagaattaaacaagttactgagaaagactaacaaaaaaaatcaaggaaagactaaggttgggctagtgccattgtttataagtttgggtagcaaagcaggaaataaaacaaatgggcacaaaattcctttggatttacatcacaagaagttatattttaaaatgagccgattatagttcatgggaatgtgtaagtgaaaatgtgacaacaaatggcagagacaaaagaaaaagatgaaaaggtaccaggggctgagtcaataccactaggaaataaaatcaaaatctggcaatgttctttggaatttcaaagttttgaagatatgtattaaatgttgcattttcagtctgtattgttgttttccctcttgggtacatttccaattttaccttccttgtccattctgttttgttgtaaactgtcccattctgattgaaaaaaacctgtcccattcttaaaagaatgaccgttcttcaagaagaatagacattacaggtaacttaaatggttagcaacaacaataacacctatagaatgacaattcaaca
gi|4 : tgaagaaatggacagtttttACACAGAAT-AAAGA-AAACTT---AC-CTG--AA-GATGGTTTCATTTT-C-GGACA-TTTCT--GATGAGGAACTT-------ATGAATGC-TAGTCAGGATATTGAAAA-T--ATT-GAGC---GCTTTCTTAAA---CCA-TTGAATCAA-GAGGAATTAAACAAGTTACTG--AAGAAA----T--------------CGAGGAATGACAAGG--TG-GGCTA-TGCCATTGTTTT-GAAATT----AGCAAAACAGGAAA-TAAA--TATTGGACCATAA-TTCATTTGGATT-----------------------TAC-ATCA-CAAGAAG--ATATTTTGAAAATA-A------TT-A---TTCATGGGAACGT-TAAATGAA---GTGACACA--AAAT-GCAGAG-GAGGAGAACGAAAAAT-GAAA--GAAACA-----GGGACTGG---AAATAC-------TACTAGTGAAATTAAAATC-AAATCTGGCAATGTTTT-TTAGGAGTTC--AA--GTTTTGAAGATATG--TAAATTAAATGTTGCA-TTT--CA---TGTATATTTGTTG-TTTAC------CCCTTGGGTACA-TTCCAA-ACTTTA-CCTG-GCA-CTGTCC-AT--TCT--GTTTGTGTGT--AACTAT-CCAT------------------T-CTGTTT--GTTG-------------TAACTG-T-CCA-T-TTTGATT----TAA----AAAA-----------AATT--------------AAGAATG-GAT-AAT----------------------AGACACTT-ACAGGTAA-CTTAATGGA-----C---------AGTTAGC-ACAACAATA--ACCTATAGAATGG-ACAATT-CAAACAAAca
gi|5 : TCAGGATATTGAAAA-T--ATT-AAGC---ACTTTTTTAAA---CCA-TTGAATCAA-GAG-AATTAAACAAGTTACTG--AAGAAAGGACTAAC--AAAAAAAAACAAGGAAAGACAAGGAG---GGCTA-TGCCAATGTATA-AAGATT-GGAAGCAAAGCAGGAAA-AAA-CAAATTGGGCCAAAA-TTACTTTGGAAT-----------------------TAC-ATCA-CAAGAAG--ATATTTTGAAAATG-A-G-CGATT-A---TTCATGGGAATGT-TAAATGAA---GTGACACA--AAAT-GCAGAG-CAAAAGAA--AAAGAT-GAAAA-GTACCA-----GGGGCTGGC--AA-TAC-------CACTAGTGAAATTAAAATC-AAATCTGGCAATGTTTC-TTTGGATTTC--AA--GTTTTGAAGATATG--TAAATTAAATGTTGCA-TTT--CA---TG--TATTTGTTGTTTTCC------CTCTTGGGTACA-TTCCAA-TCTTTAGCCTGTTCATTTTTCC-AT--TCT--GTTGTT-TGT--AACTGT-CCAT------------------T-CTG-----ATTG---------AAAAAACCTG-T-CCA-T-TC----T----TAA----AAGAATG-----CACATTCT-T------TCAAGAAGAAT-------------------------------AGACACTT-ACA-GTAA-CTTAAT--------T----------GTTAGCAA--ACAATA--ACCTATA-AATGG-ACAATTCCAAACAAt
gi|6 : AAAACAGGAAG-AA-------TG---------TTCATT-AGATT-----------------------TTC-ACCA-TAAGAAG--GCATTT-AAAAATG-A-A-TGATT-A---TTTATAGGAATAT-GAAATGTA---GAGACACACAAAAT-ACAGAG-GAAGAGAA--ACGAGT-GAAG--GTACCA-----GGGACTGG---AAACAT-------CACTAATGGAACCAAAATC-AAATCTGGCGATGTGTC-CTTCGAGTTC--AA--GTTTTGAAGATACG--TAAACTAAATG----------------------TTTGTTGCCCCCCCCCCCTCCCTTGGGTACA-CTGCAA-TCTTTA-CATG-GCA-CTTTCTAAT--TCT--ATTTGT-TGT--AATTGT-CCATCATACATGTACCCCCACCT-CAGAGAATATTGAGAGAGAAAAAAACAACTG-T-CCA-T-TC---TT-----------AATAATG-----GACAGTTC-T------TAAAAAAGAATA-GAC-ACTT--tta
gi|7 : GCCC--TCGATCA-GTTCTTT---CTCT-CA---CAG---A-AT-G-GACAGTTTT-C---GGCCTTTCT--CC-------a
gi|7 : -AAACTGT-CCAT------------------T-CTG-------TG------AGAGAAAGAACTGAT-CGAGG-GC---GG----TAGGCCCGAG-ATG--------AGTTC-TTTC---TCAGACAGAATG-GAC-AATT--Tggtaggcccgagatgagttctttctcagacagaatggacaatttaaagcctttctcctacttaaaacattattttccttttttgggatggattcaaataaagatgtattgtattcagaatgaattgtttctgcaatagtaaaatctttgtgcacagaatagacagtcacaggtaagttaagggtgctctgcattttgtttaatggctattgttctagaagatgctacacattacaaaagcatggaagcttacaggtgggctttgtcttatatatatacaagtgtgtgatgtttctgaatcagttgaaagttcgccattgtaagataagcatgt
gi|7 : ggagaaaggccgaCGAGGGCGGTAGGCCC--GAGATGA-GTTCTTT---CTC---AGA-CAG---A-AT-G-GACAATTTA-A---AGCCTTTCT--CC-------TACT-TAA--A--ACA-T-TATTTTC-CTTTTTT-GG---GATGGA---T-TCAAATA-A-AGAT-GTATT-GTATTCAGAATGAATTGTT-------TC-----T-GCAATA---GTA----AAAT-CTTTGTGCACAG-AA---TAG--ACAGTC-ACAGGTAAGTTAAGG-GTGC----T-CT-GCATTTTGTTTAATGG-CTATTGTTCT----A-----------GAA---------GATG-CT-ACACAT-TACAA-A--AGCATGGAAGC-TT-ACA-GGTGG-GCTTT-G-----T--C--TTAT-ATATA---TACA-AGT---GTGTGATGTTTCTGAA-TCA-GTTG--AAAGTTCG---CCATTGTAA-GATAAGC-ATGTaaagcctttctcctacttaaaacattattttccttttttgggatggattcaaataaagatgtattgtattcagaatgaattgtttctgcaatagtaaaatctttgtgcacagaatagacagtcacaggtaagttaagggtgctctgcattttgtttaatggctattgttctagaagatgctacacattacaaaagcatggaagcttacaggtgggctttgtcttatatatatacaagtgtgtgatgtttctgaatcagttgaaagttcgccattgtaagataagcatgt
gi|8 : ggagaaaggccgaaaactgtccattctgtgagagaaagaactgat---CCCT-C-GATCAGTTCA-AT-G-GACAGTTTT-C---GGCCTTTCT--CC-------T
gi|8 : atgtaaCGAGGGCCGTAGGCCC--GAGATGA-GTTCTTT---TTCT-T---ACAG---A-AT-G-GACAGTTTA-A---GGCCTTTCT--CCTACATTGTACT-TAA--A--ACA-TAAATTTTCATTATTGT-GG---GA-AGA---TGTCAAACA-A-AGAT-GGATT-GTA-TCAGAATTAATTGTT-------CCAGGG-TAGCAATACATGCATAGTAAAT-TATTGTTTACAGTAA---TAG--ACAGTC-ATAGGTAAGTTAGGG-GTGC----T-CCCGCATTTGGTTTAAT-G-GTATTGTCTT----A-----------GAAC--------TAT--CT-ACACAT-TACAA-A--AGCATGGAAAC-TTAACA-GGTGG-GC-TT-ccgtaggcccgagatgagttctttttcttacagaatggacagtttaaggcctttctcctacattgtacttaaaacataaattttcattattgtgggaagatgtcaaacaaagatggattgtatcagaattaattgttccagggtagcaatacatgcatagtaaattattgtttacagtaatagacagtcataggtaagttaggggtgctcccgcatttggtttaatggtattgtcttagaactatctacacattacaaaagcatggaaacttaacaggtgggcttttgtc
gi|9 : atgtaaaggagaaaggccgaaaactgtccattgaactgatTTAATGGA-----CAGTTTATGGAGTTACCA-CAACAATA--ACCTATAGAATGG-ACAATT-CAAACAAAAGGTTTACGTCAC-AATCATGttgtc
Alignments
lowQualScore : 11 3333333 111111 1111111 1 111111 11 444444444444444 44444444444444 111 1111 1 1 111 11 1 1 222222 1 1 888888888888888888888888888888888 1 111 333333333333333333 111 1 2222 11 2 11 111 1 1 55555555555555555 1 1 1 222 1111 1 1 11 11 1 1 1 1 11 1 1 1 1 11 3333333 1 1111 111 111 11111 11 1 22222 1 1 1111 1 66666666666666666666666 22 111 111 111 11 11111 111 1 2222222 111 111111 1 111 11 5555555555555555555555555555555555555555 2222222222222222 111111 222222 888888888888888888888888 7777777777777777777 1
lowQualScore : 1 11 5 777 2222222 555 3 3 3 222222 55 1111111 3 111111 6 77 00 6 111111111111111 6 6 6 6 3 11111111111111 6 444 7777 0 1 1 0 777 33 0 0 222222 8 3 3 0 0 000000000000000000000000000000000 0 3 8 8 111 8 8 8 8 8 666666666666666666 3 777 0 0000 33 0 33 777 1 0 0 6 6 66666666666666666 3 7 3 3 555 7 7 8888 3 6 2 88 6 44 2 0 0 3 0 33 0 3 0 0 0 33 3 2222222 2 0 0 2222 8 444 444 8 8 8 0 11111 3 0 11 6 3 1 77777 6 6 1 1 5 0000 99 1 11111111111111111111111 3 6 22 3 99 22 6 444 6 111 6 111 99 6 6 99 6 44 6 66666 888 3 1111111 1 1 6 6 99 99 0 99 6 99 111 99 1 999999 5 777 5 77 888 1 77 444 5 66 5 1111111111111111111111111111111111111111 8 4 4 4 5555555555555555 2 444444 4 000000 2 4 4 555555555555555555555555 5 5 7777777777777777777 6 5 66 5 5 1 0
lowQualScore : . .. . ... ....... ... . . . ...... .. ....... . ...... . .. .. . ............... . . . . . .............. . ... .... . . . . ... .. . . ...... . . . . . ................................. . . . . ... . . . . . .................. . ... . .... .. . .. ... . . . . . ................. . . . . ... . . .... . . . .. . .. . . . . . .. . . . . . .. . ....... . . . .... . ... ... . . . . ..... . . .. . . . ..... . . . . . .... .. . ....................... . . .. . .. .. . ... . ... . ... .. . . .. . .. . ..... ... . ....... . . . . .. .. . .. . .. ... .. . ...... . ... . .. ... . .. ... . .. . ........................................ . . . . ................ . ...... . ...... . . . ........................ . . ................... . . .. . . . .
lowQualScore : 0 00 0 000 6666666 888 3 3 3 555555 00 8888888 3 000000 7 77 33 7 000000000000000 7 7 7 7 5 33333333333333 7 000 0000 0 0 0 0 555 88 0 0 222222 8 2 2 0 0 000000000000000000000000000000000 0 2 0 0 888 0 0 0 0 0 222222222222222222 2 555 0 8888 22 0 88 555 2 0 0 7 7 77777777777777777 3 3 3 3 777 3 3 0000 3 7 0 33 7 33 0 0 0 2 0 88 0 2 0 0 0 22 2 5555555 5 0 8 6666 0 000 000 0 0 0 8 66666 2 8 00 0 8 4 22222 7 7 7 3 7 4444 77 3 77777777777777777777777 5 7 88 2 22 77 7 333 7 777 7 777 22 7 7 22 7 00 7 77777 333 3 7777777 7 7 7 7 22 22 7 22 7 22 777 22 7 222222 7 000 7 44 999 4 99 666 7 22 0 4444444444444444444444444444444444444444 9 4 4 4 4444444444444444 0 000000 4 666666 1 4 4 222222222222222222222222 7 7 0000000000000000000 2 4 11 7 7 0 0
consensus : CGAGGGCNGTAGGCCC--GAGATGA-GTTCTTT---CTCT-CAGAACAG---A-AT-G-GACAGTTTN-C---GGCCTTTCT--CC-------TACT-TAA--A--ACA-T-GATTTTC-CTCTTTT-GG---GATGGA---T-TCAAATA-A-AGAT-GTATT-GTATTCAGAATGAATTGTT-------TC-----T-GCAATA---GTA----AAAT-CNTTGTNCACAG-AA---TAG--ACAGTC-ACAGGTAAGTTAAGG-GTGC----T-CTGGCATTTTGTTTAAT-G-CTATTGTTCT-A-----------GAA-GAT------------GCT-ACACAT-TACAA-A--AGCATGGAAAC-TT-ACA-GGTGG-GC-TT-G-----T--CAGNCAT-ATATA---TACA-AGT---GTGTGATGTTTCTGAA-TCA-GTTG--AAAGTTCG---CCTTTGTAA-GATAAGC-ATGTCTTCCTCTTATGGAGAAAA-CGT-CTAATT-T--T-TAAC-TTGGTC-AAAATTT-AAAGAAA--TGAATATGCGCAAAAATACTGATG-GTTAT-ACTTAGAGT--ACACTTTGGATCTAN-AAATGGAAAATGATGAAACACAAAAT-AAGGA-AAATTTTTTAC-GTG--AA-GATGGGTTCATTTT-C-G-ACA-TTTTTTGAATGAGGAACTT-------ACGAATGC-TAGTCAGGATATTGAAAAAT--ATT-GAGC---ACTTTTTTAAA---CCA-TTGAATCAA-GAG-AATTAAACAAGTTACTG--AGGAAAGGACTAAC--AAAAAAAA-CAAGGAAAGACAAGG-GTT-GGCTA-TGCCATTGTTTA-AAGATTTGGTAGCAAAACAGGAAA-AAAACATATTGGGCCAAAAATTCATTTGGATT-----------------------TAC-ATCAACAAGAAG--ATATTTTGAAAATG-A-G-CGATT-A---TTCATGGGAATGT-TAAATGAA---GTGACACA--AAAT-GCAGAG-CAAGAGAA--AAAAGT-GAAAA-GTACCA-----GGGACTGG---AA-TAC-------CACTAGTGAAATTAAAATC-AAATCTGGCAATGTTTC-TTTGGAGTTC--AA--GTTTTGAAGATACG--TAAATTAAATGTTGCA-TTT--CA---TG--TATTTGTTGTTTTCC------CCCTTGGGTACA-TTCCAA-TCTTTA-CCTG-GCA-CCGTCC-AT--TCT--NTTTGT-TGT-AAACTGT-CCAT------------------T-CTG-----ATTGA-----AAAAAAAAAACTG-T-CCA-T-TC---TT----TAA----AAGAATG-----GACAGTTC-T------TCAAAAAGAATG-GAC-AGTT--TTTTC---A-----AGAA-AGACACTT-ACAGGTAA-CTTAATGGA-----T-GT-----GAGTTAGCAACGACAATA--ACCTATAGAATGG-ACAATT-CAAACAAAAGGNTTACGTCAC-AATCATG
Reference ( family-6810 ) : CGAGGGCNGTAGGCCC--GAGATGA-GTTCTTT---CTCT-CAGAACAG---A-AT-G-GACAGTTTN-C---GGCCTTTCT--CC-------TACT-TAA--A--ACA-T-GATTTTC-CTCTTTT-GG---GATGGA---T-TCAAATA-A-AGAT-GTATT-GTATTCAGAATGAATTGTT-------TC-----T-GCAATA---GTA----AAAT-CNTTGTNCACAG-AA---TAG--ACAGTC-ACAGGTAAGTTAAGG-GTGC----T-CTGGCATTTTGTTTAAT-G-CTATTGTTCT-A-----------GAACGAT------------GCT-ACACAT-TACAA-A--AGCATGGAAAC-TT-ACA-GGTGG-GC-TT-G-----T--CAGNCAT-ATATA---TACA-AGT---GTGTGATGTTTCTGAA-TCA-GTTG--AAAGTTCG---CCTTTGTAA-GATAAGC-ATGTCTTCCTCTTATGGAGAAAA-CGT-CTAATT-T--T-TAAC-TTGGTC-AAAATTT-AAAGAAA--TGAATATGCGCAAAAATACTGATG-GTTAT-ACTTAGAGT--ACACTTTGGATCTAN-AAATGGAAAATGATGAAACACAAAAT-AAGGA-AAATTTTTTAC-GTG--AA-GATGGGTTCATTTT-C-G-ACA-TTTTTTGAATGAGGAACTT-------ACGAATGC-TAGTCAGGATATTGAAAAAT--ATT-GAGC---ACTTTTTTAAA---CCA-TTGAATCAA-GAG-AATTAAACAAGTTACTG--AGGAAAGGACTAAC--AAAAAAAA-CAAGGAAAGACAAGG-GTT-GGCTA-TGCCATTGTTTA-AAGATTTGGTAGCAAAACAGGAAA-AAAACATATTGGGCCAAAAATTCATTTGGATT-----------------------TAC-ATCAACAAGAAG--ATATTTTGAAAATG-A-G-CGATT-A---TTCATGGGAATGT-TAAATGAA---GTGACACA--AAAT-GCAGAG-CAAGAGAA--AAAAGT-GAAAA-GTACCA-----GGGACTGG---AA-TAC-------CACTAGTGAAATTAAAATC-AAATCTGGCAATGTTTC-TTTGGAGTTC--AA--GTTTTGAAGATACG--TAAATTAAATGTTGCA-TTT--CA---TG--TATTTGTTGTTTTCC------CCCTTGGGTACA-TTCCAA-TCTTTA-CCTG-GCA-CCGTCC-AT--TCT--NTTTGT-TGT-AAACTGT-CCAT------------------T-CTG-----ATTGA-----AAAAAAAAAACTG-T-CCA-T-TC---TT----TAA----AAGAATG-----GACAGTTC-T------TCAAAAAGAATG-GAC-AGTT--TTTTC---A-----AGAA-AGACACTT-ACAGGTAA-CTTAATGGA-----T-GT-----GAGTTAGCAACGACAATA--ACCTATAGAATGG-ACAATT-CAAACAAAAGGNTTACGTCAC-AATCATG
gi|1 : A-GTTCTTTTTCCTCC-CA---CAG---A-GT-GAGACAGTTTTTC---GGCCTTTCT--CC-------T
gi|1 : gtaa-TAT-AAACTGT-CCACG-----------------T-CTG------TTGA-----AGAGAAAGAACT-----CA-TCTC---GT----GGA----CATACCGCCCTCGACAGTTC-TTTTTCCTCCCACAGAGTGAGAC-AGTT--TTTgtcgagggcggtatgtccacgagatgagttctttctcttcaacagacgtggacagtttatacaggcctttctgccctattctaaggagcaatgattttccccttttggtaggatgggattttcagataatggattgtatttgaattcagatagaattgttcaggtcgtcatacatgcaaaagtaaaaatattgtttacagaagaataagaacagtccacataaaagttaaggcgtgtaaattgctggcattttgttaatggctattgtttttataaggatctcacgtggatggctcacacatctacaaagcagcgaagaaacgttacaaggtggcgctttgtttcagactattatacagagtaaggtgtgatgtttttgaatcagttgctaaagttcgaactccttgtaagataagcaagtcttcctcttatggagaaaagcgtactaagtattataactggtcaaaatttaaagaaacctgaatatgcgcaaaatactgatgtgttatataagtgcactttggatctaagaaatggaaaatagtgaaacacaaaataaggacaaattttttacgtagaaagatgggttcattttcgacattttttgaatgaggtactttacatgtacgaatgcctagtcaggatattgaaaaattaattgagcatttttaaaaagccaattgaatcaagagaattaagcaagttactgagaaaggactaaccaaaagaaaacaggaaaggcaaaggtgactatgccattgtttaaagttggtagaaaacaggataaaacatattgggccaaaattcatttggattttttttttttttttttttttttttaccatcacaagatattttgaaaatgaggcgattattcatgggaatgttaaatgaagtgacacaaaatgcagaacaagaggaaaaagtggaaaagtaacgcagctgggactgaaatacatgtatgcactagtgaaattaaaattcaatctggcaatgtttcttttggagttcagttttgaagatacgtttaaattaaatgttgcatttcccatgtatttgttgttttcctccttgggtacattccaattttttacctggcatgtccattgtcttgttttgttttgtcctgtcattctgattgaaaaaaaaacctgttccattcttaaaagaatggaaagttctttcaaaaagaatggacagtttctcttcagaagaatagtcacttacaggtaaattaatgggcagtttgtgagttagcaaccaatacctatagaatggacaattcaaaccaaagggttacgtcacaaatcatgtttttaaatgtacgctatgaagaatgtgt
gi|1 : gtaaaggagaaaggccgCGAGGGCGGTATGTCCACGAGATGA-GTTCTTT---CTCTTCA--ACAG---ACGT-G-GACAGTTTA-TACAGGCCTTTCTGCCC-------TATTCTAAGGA--GCAAT-GATTTTC-CCCTTTT-GGTAGGATGGGATTT-TCAGATA-ATGGATTGTATTTGAATTCAGATAGAATTGTTCAGGTCGTCATACAT-GCAAAA---GTA----AAAA-TATTGTTTACAG-AAGAATAAGAACAGTCCACATAAAAGTTAAGGCGTGTAAATTGCTGGCATTTTGTT-AAT-GGCTATTGTTTTTA-----------TAAGGATCTCACGTGGATGGCTCACACATCTACAA-AGCAGCGAAGAAACGTT-ACAAGGTGGCGC-TTTG-----TTTCAGAC-T-AT-TA---TACAGAGTAAGGTGTGATGTTTTTGAA-TCA-GTTGCTAAAGTTCGAACTCCTTGTAA-GATAAGC-AAGTCTTCCTCTTATGGAGAAAAGCGTACTAAGTAT--TATAAC-T-GGTC-AAAATTT-AAAGAAACCTGAATATGCGCAAAA-TACTGATGTGTTAT-A--TA-AGT--GCACTTTGGATCTAAGAAATGGAAAATAGTGAAACACAAAAT-AAGGACAAATTTTTTAC-GTAGAAA-GATGGGTTCATTTT-C-G-ACA-TTTTTTGAATGAGGTACTTTACATGTACGAATGCCTAGTCAGGATATTGAAAAATTAATT-GAGC---A--TTTTTAAAAAGCCAATTGAATCAA-GAG-AATTAAGCAAGTTACTG--A-GAAAGGACTAACCAAAAGAAAA-C-AGGAAAGGCAAAG-G-T-GACTA-TGCCATTGTTTA-AAG--TTGGTAG-AAAACAGG-AT-AAAACATATTGGGCC-AAAATTCATTTGGATTTTTTTTTTTTTTTTTTTTTTTTTTACCATC-ACA---AG--ATATTTTGAAAATG-AGG-CGATT-A---TTCATGGGAATGT-TAAATGAA---GTGACACA--AAAT-GCAGAA-CAAGAGGA--AAAAGTGGAAAA-GTAACGCAGCTGGGACTGA---AA-TACATGTATGCACTAGTGAAATTAAAATT-CAATCTGGCAATGTTTCTTTTGGAGTTC---A--GTTTTGAAGATACGTTTAAATTAAATGTTGCA-TTTCCCA---TG--TATTTGTTGTTTTCC------TCCTTGGGTACA-TTCCAATTTTTTA-CCTG-GCA--TGTCC-ATTGTCTTGTTTTGT-TTT-GTCCTGT--CAT------------------T-CTG-----ATTG------AAAAAAAAACCTGTT-CCA-T-TC----T----TAA----AAGAATG-----GAAAGTTCTT------TCAAAAAGAATG-GAC-AGTTTCTCTTCAG-A-----AGAATAGTCACTT-ACAGGTAA-ATTAATGGGCAGTTT-GT-----GAGTTAGCAAC--CAAT---ACCTATAGAATGG-ACAATT-CAAACCAAAGGGTTACGTCACAAATCATGcaggcctttctgccctattctaaggagcaatgattttccccttttggtaggatgggattttcagataatggattgtatttgaattcagatagaattgttcaggtcgtcatacatgcaaaagtaaaaatattgtttacagaagaataagaacagtccacataaaagttaaggcgtgtaaattgctggcattttgttaatggctattgtttttataaggatctcacgtggatggctcacacatctacaaagcagcgaagaaacgttacaaggtggcgctttgtttcagactattatacagagtaaggtgtgatgtttttgaatcagttgctaaagttcgaactccttgtaagataagcaagtcttcctcttatggagaaaagcgtactaagtattataactggtcaaaatttaaagaaacctgaatatgcgcaaaatactgatgtgttatataagtgcactttggatctaagaaatggaaaatagtgaaacacaaaataaggacaaattttttacgtagaaagatgggttcattttcgacattttttgaatgaggtactttacatgtacgaatgcctagtcaggatattgaaaaattaattgagcatttttaaaaagccaattgaatcaagagaattaagcaagttactgagaaaggactaaccaaaagaaaacaggaaaggcaaaggtgactatgccattgtttaaagttggtagaaaacaggataaaacatattgggccaaaattcatttggattttttttttttttttttttttttttaccatcacaagatattttgaaaatgaggcgattattcatgggaatgttaaatgaagtgacacaaaatgcagaacaagaggaaaaagtggaaaagtaacgcagctgggactgaaatacatgtatgcactagtgaaattaaaattcaatctggcaatgtttcttttggagttcagttttgaagatacgtttaaattaaatgttgcatttcccatgtatttgttgttttcctccttgggtacattccaattttttacctggcatgtccattgtcttgttttgttttgtcctgtcattctgattgaaaaaaaaacctgttccattcttaaaagaatggaaagttctttcaaaaagaatggacagtttctcttcagaagaatagtcacttacaggtaaattaatgggcagtttgtgagttagcaaccaatacctatagaatggacaattcaaaccaaagggttacgtcacaaatcatgtttttaaatgtacgctatgaagaatgtgt
gi|10 : gtaaaggagaaaggccgaaaaactgtctcactctgtgggaggaaaaagaactgtTTCTTT---CTCT-CA---CAG---A-TT-G-GACAGTTTT-C---TGCCTTTCT--CC-------Ttttttaaatgtacgctatgaagaatgtgt
gi|10 : aAAACTG-T-CCA-T-TC---TTTCTCTCA----CAGATTG-----GACAGTTT-T------tggacagtttgtgatctttctcctacttaaaacatgatttctcttttgaaataaagatgtattgtattcagaatgattttttttacaattagcatacat
gi|10 : aaggagaaaggcagAGAA-AG---A-AT-G-GACAGTTTG-T---GATCTTTCT--CC-------TACT-TAA--A--ACA-T-GATTT---CTCTTTT-G-----------------AAATA-A-AGAT-GTATT-GTATTCAGAATG-ATTTTT-------TT-----T-ACAATgtgatctttctcctacttaaaacatgatttctcttttgaaataaagatgtattgtattcagaatgattttttttacaattagcatacat
gi|11 : aaggagaaaggcagaaaactgtccaatctgtgagA--ACCTATAGAATGG-ACAATT-CAAACAAAAGAACTACGTCAC-AGTCATGtagcatacat
gi|11 : A-GTTCTTT---CTC------ACAG---A-AT-G-GACAGTTTG-A---GACTTTTatttaaaagtctcaaactgtccattctgtgagaaagaactactgccgtcgattagtcctt
gi|12 : aacctatagaatggacaattcaaacaaaagaactacgtcacagtcatgatttGAA-AG---A-AT-G-GACAGTT-G-T---GATCTTTCT--CC-------TACTCTAA--AGAACA-T-GATTTTC--TCTTTT-G-----------------AAATATA-AGAT-GTATT-GTATTAAAGAGGTTTTTTT-------TT-----T-ACAATA---GCA----actgccgtcgattagtcctt
gi|13 : ATCA-GTTCTTT---CTCT----GACAT---A-AT-A-GACAGTTTT-C---GGCTTCTAT--CT-------TA
gi|14 : gtaattCCTTGGGTACA-TTCCAA-TCTTTA-CCTG-ACA-CCGTCT-AT--GCT--CTTTGgggggttgagaccagttgtttctttcacagaatg
gi|15 : -AGACACTT-ACAGGTAA-CTTAATG------------------CTTAGC-ACGACAATA--ACCTATA
gi|16 : -TGCCATTGTTTA-AAG-TTTGGTAGCAAAACAGAAAA-AAAA
gi|2 : CGAGGTCTGTAGGCT---GAGATGACGTTCTTT----TCT-CAGAACAG---A-ATTG-GACAATT-A-A---AGCCTTTCT--CC-------TACT-TAA--A---CA-T-TATTTTC-TTTTTTTTGG---GATGGA---T-TCAAATA-A-AGAT-GTATT-GTATTCAGAATGAATTGTT-------TC-----T-GCAATA---GTA----AAATTCTTTGTGCACAG-AA---TAG--ACAGTC-ACAGGTAAGTTAAGG-GTGC----T-CTGGCATTTTGTTTA-T-G-CTATTGTTCT-ATAAAAAAAAAAGAA-GAT------------GCT-ACAC-T-TACAA-A---GCATGGAAGC-TT-ACA-GGTGG-GC-TT-G-----T--CAATTAT-ATATA---TACA-AGT---GTGTGATGTTTCTGA--TCAAGTTG--AAAGTTCG---CCTTTGTAAAGATAAGCCATGTAATC-TCTTATGTA-AAAA-CGT-TT--TT-T--T-CAAC-TTGGTCGAAAATTT-AAAGAA---------TGCGCAAAAATACTAATG-GT-AT-ACTTAAAGTTGACACTTTGGATCTAG-AAATGGAAAAT-AGGAAACACAAAATCAAGGA-AAATTTTTTAC-GTG--AA-GTTGTGTTCATTTTTC-G-ACATTTTTTTGAATGAGGAACTT-------ACGAATGC-TAGTCAGGATATTG-AAAAT--ATT-GAGC---ACTTTTTTATA---CCA-TTGAATCAG-AGG-AATTAAACAAGTT--TGAAAGAAAAGGACTAAC--AAGAAAAA-CAAGGAAAGGCAACA-GTT-GGCTA-TGTCATTGTTTA-AAGATTTGGTAGCAAAACAGAAAA-AAAACATATTGGGGAAAAAATTTATTTGGATT-----------------------T-C-ATCAACAAG-AG--ATATTTCGCAAATGAA-G-CGATTAA---TTCATGGAAATGT-TAGATGAA---GTGACACA--AAAT-GCAGAG-CAAGAGAA--GAAAGT-TAAAA-GTA-CA-----GGGACTGG---AA-TAC-------CAC-AGTG-AATTAAAATC-AAATCTGGCAATTTTCT-TTTGGAGTTC--AATTTTTTTGAAGATATG--TAAATTAAATGTTGCA-TTT--CA---TG--TATTTGTT-TTTCCC------CCCTTGGGTACA-TTCCAA-T-TTTA-CCTG-ACA-CCGTCTAAT--GCT--CTTTGT-TGTAAAACTGT-TCAT------------------TCCTG-----ATTGA-----AAAAAAAAAACTC-T-CCA-T-TC---TT----TAA----AAGCATG-----AACAGTTC-T------TCATAAAGAATG-GACAAGTT--TTTTCAAGA-----AGAA-AGACACTTAACAGGTAA-TTTAATGAAGTT--T-GT-----GAGTTAGCAACGACAATA--ACCTATAGAATGGAACAATT-CAAA-AAAATATTTACGTCAC-AATCATGa
gi|3 : AAGAAATG-GAC-AGTT--TTTTT---ACAGTAAGAATAGACACTT-ACAGGTAAGCTTAAC--------T-GC--------TTAGGCACGAC-ATA--ACCTATAAGATG
gi|3 : tgT-TACAGTA--AGAATAGACAC-TT-ACA-GGTAA-GC-TT-AACTGCT--TAGGCACGACATAACCTATA-AG----ATGTGATGTTTCTGAAATCATGTTG--AAAGTTCG---CCTTTGTAA-GATAAGC-ATGTCTTCCTCTTATGGAGAAAA-------AATT-TTCT-TAACTTTGGTT-CAAATTTCAAAGAAA--TGAATATGCGCAAAAATACTGA-G-G-TATAACTTAGTGT--ACACTTT-GATCTAC-GAATGGAAAATGATGAACCACAAAAT-AAGGA-AAATCTTTTACAGTG--AACGATGGGTTTA--TT-CGG-ACA--CTTTTGACTGAGGAAACT-------ACGAAT-C-TAGTCAGGATATTGAAAAAT--ATTAAAGCAAAACTTTTTAAAA---ACA-TTGAATCACTGAG-AATTAAACAAGTTACTG--AG--AAAGACTAAC--AAAAAAAATCAAGGAAAGACTAAG-GTTGGGCTAGTGCCATTGTTTATAAGTTTGGGTAGCAAAGCAGGAAATAAAACA-AATGGGCACAAAATTCCTTTGGATT-----------------------TAC-ATC-ACAAGAAGTTATATTTT-AAAATG-A-GCCGATT-ATAGTTCATGGGAATGTGTAAGTGAAAATGTGACAAC--AAATGGCAGAGACAAAAGAA--AAAGAT-GAAAAGGTACCA-----GGGGCTGAGTCAA-TAC-------CACTAG-GAAA-TAAAATCAAAATCTGGCAATG-TTC-TTTGGAATTTCAAA--GTTTTGAAGATATG--T--ATTAAATGTTGCATTTT--CAGTCTG--TA-TTGTTGTTTTCC------CTCTTGGGTACATTTCCAA-T-TTTA-CCT--TCC-TTGTCC-AT--TCTG-TTTTGT-TGT-AAACTGTCCCAT------------------T-CTG-----ATTG--------AAAAAAACCTG-TCCCA-T-TC----T----TAA----AAGAAT------GACCGTTC-T------TCAAGAAGAATA-GAC-A------------------------------TT-ACAGGTAA-CTTAA---A-----T-G--------GTTAGCAACAACAATAACACCTATAGAAT-G-ACAATT-CAAtgatgtttctgaaatcatgttgaaagttcgcctttgtaagataagcatgtcttcctcttatggagaaaaaattttcttaactttggttcaaatttcaaagaaatgaatatgcgcaaaaatactgaggtataacttagtgtacactttgatctacgaatggaaaatgatgaaccacaaaataaggaaaatcttttacagtgaacgatgggtttattcggacacttttgactgaggaaactacgaatctagtcaggatattgaaaaatattaaagcaaaactttttaaaaacattgaatcactgagaattaaacaagttactgagaaagactaacaaaaaaaatcaaggaaagactaaggttgggctagtgccattgtttataagtttgggtagcaaagcaggaaataaaacaaatgggcacaaaattcctttggatttacatcacaagaagttatattttaaaatgagccgattatagttcatgggaatgtgtaagtgaaaatgtgacaacaaatggcagagacaaaagaaaaagatgaaaaggtaccaggggctgagtcaataccactaggaaataaaatcaaaatctggcaatgttctttggaatttcaaagttttgaagatatgtattaaatgttgcattttcagtctgtattgttgttttccctcttgggtacatttccaattttaccttccttgtccattctgttttgttgtaaactgtcccattctgattgaaaaaaacctgtcccattcttaaaagaatgaccgttcttcaagaagaatagacattacaggtaacttaaatggttagcaacaacaataacacctatagaatgacaattcaaca
gi|4 : tgaagaaatggacagtttttACACAGAAT-AAAGA-AAACTT---AC-CTG--AA-GATGGTTTCATTTT-C-GGACA-TTTCT--GATGAGGAACTT-------ATGAATGC-TAGTCAGGATATTGAAAA-T--ATT-GAGC---GCTTTCTTAAA---CCA-TTGAATCAA-GAGGAATTAAACAAGTTACTG--AAGAAA----T--------------CGAGGAATGACAAGG--TG-GGCTA-TGCCATTGTTTT-GAAATT----AGCAAAACAGGAAA-TAAA--TATTGGACCATAA-TTCATTTGGATT-----------------------TAC-ATCA-CAAGAAG--ATATTTTGAAAATA-A------TT-A---TTCATGGGAACGT-TAAATGAA---GTGACACA--AAAT-GCAGAG-GAGGAGAACGAAAAAT-GAAA--GAAACA-----GGGACTGG---AAATAC-------TACTAGTGAAATTAAAATC-AAATCTGGCAATGTTTT-TTAGGAGTTC--AA--GTTTTGAAGATATG--TAAATTAAATGTTGCA-TTT--CA---TGTATATTTGTTG-TTTAC------CCCTTGGGTACA-TTCCAA-ACTTTA-CCTG-GCA-CTGTCC-AT--TCT--GTTTGTGTGT--AACTAT-CCAT------------------T-CTGTTT--GTTG-------------TAACTG-T-CCA-T-TTTGATT----TAA----AAAA-----------AATT--------------AAGAATG-GAT-AAT----------------------AGACACTT-ACAGGTAA-CTTAATGGA-----C---------AGTTAGC-ACAACAATA--ACCTATAGAATGG-ACAATT-CAAACAAAca
gi|5 : TCAGGATATTGAAAA-T--ATT-AAGC---ACTTTTTTAAA---CCA-TTGAATCAA-GAG-AATTAAACAAGTTACTG--AAGAAAGGACTAAC--AAAAAAAAACAAGGAAAGACAAGGAG---GGCTA-TGCCAATGTATA-AAGATT-GGAAGCAAAGCAGGAAA-AAA-CAAATTGGGCCAAAA-TTACTTTGGAAT-----------------------TAC-ATCA-CAAGAAG--ATATTTTGAAAATG-A-G-CGATT-A---TTCATGGGAATGT-TAAATGAA---GTGACACA--AAAT-GCAGAG-CAAAAGAA--AAAGAT-GAAAA-GTACCA-----GGGGCTGGC--AA-TAC-------CACTAGTGAAATTAAAATC-AAATCTGGCAATGTTTC-TTTGGATTTC--AA--GTTTTGAAGATATG--TAAATTAAATGTTGCA-TTT--CA---TG--TATTTGTTGTTTTCC------CTCTTGGGTACA-TTCCAA-TCTTTAGCCTGTTCATTTTTCC-AT--TCT--GTTGTT-TGT--AACTGT-CCAT------------------T-CTG-----ATTG---------AAAAAACCTG-T-CCA-T-TC----T----TAA----AAGAATG-----CACATTCT-T------TCAAGAAGAAT-------------------------------AGACACTT-ACA-GTAA-CTTAAT--------T----------GTTAGCAA--ACAATA--ACCTATA-AATGG-ACAATTCCAAACAAt
gi|6 : AAAACAGGAAG-AA-------TG---------TTCATT-AGATT-----------------------TTC-ACCA-TAAGAAG--GCATTT-AAAAATG-A-A-TGATT-A---TTTATAGGAATAT-GAAATGTA---GAGACACACAAAAT-ACAGAG-GAAGAGAA--ACGAGT-GAAG--GTACCA-----GGGACTGG---AAACAT-------CACTAATGGAACCAAAATC-AAATCTGGCGATGTGTC-CTTCGAGTTC--AA--GTTTTGAAGATACG--TAAACTAAATG----------------------TTTGTTGCCCCCCCCCCCTCCCTTGGGTACA-CTGCAA-TCTTTA-CATG-GCA-CTTTCTAAT--TCT--ATTTGT-TGT--AATTGT-CCATCATACATGTACCCCCACCT-CAGAGAATATTGAGAGAGAAAAAAACAACTG-T-CCA-T-TC---TT-----------AATAATG-----GACAGTTC-T------TAAAAAAGAATA-GAC-ACTT--tta
gi|7 : GCCC--TCGATCA-GTTCTTT---CTCT-CA---CAG---A-AT-G-GACAGTTTT-C---GGCCTTTCT--CC-------a
gi|7 : -AAACTGT-CCAT------------------T-CTG-------TG------AGAGAAAGAACTGAT-CGAGG-GC---GG----TAGGCCCGAG-ATG--------AGTTC-TTTC---TCAGACAGAATG-GAC-AATT--Tggtaggcccgagatgagttctttctcagacagaatggacaatttaaagcctttctcctacttaaaacattattttccttttttgggatggattcaaataaagatgtattgtattcagaatgaattgtttctgcaatagtaaaatctttgtgcacagaatagacagtcacaggtaagttaagggtgctctgcattttgtttaatggctattgttctagaagatgctacacattacaaaagcatggaagcttacaggtgggctttgtcttatatatatacaagtgtgtgatgtttctgaatcagttgaaagttcgccattgtaagataagcatgt
gi|7 : ggagaaaggccgaCGAGGGCGGTAGGCCC--GAGATGA-GTTCTTT---CTC---AGA-CAG---A-AT-G-GACAATTTA-A---AGCCTTTCT--CC-------TACT-TAA--A--ACA-T-TATTTTC-CTTTTTT-GG---GATGGA---T-TCAAATA-A-AGAT-GTATT-GTATTCAGAATGAATTGTT-------TC-----T-GCAATA---GTA----AAAT-CTTTGTGCACAG-AA---TAG--ACAGTC-ACAGGTAAGTTAAGG-GTGC----T-CT-GCATTTTGTTTAATGG-CTATTGTTCT-A-----------GAA-GAT------------GCT-ACACAT-TACAA-A--AGCATGGAAGC-TT-ACA-GGTGG-GCTTT-G-----T--C--TTAT-ATATA---TACA-AGT---GTGTGATGTTTCTGAA-TCA-GTTG--AAAGTTCG---CCATTGTAA-GATAAGC-ATGTaaagcctttctcctacttaaaacattattttccttttttgggatggattcaaataaagatgtattgtattcagaatgaattgtttctgcaatagtaaaatctttgtgcacagaatagacagtcacaggtaagttaagggtgctctgcattttgtttaatggctattgttctagaagatgctacacattacaaaagcatggaagcttacaggtgggctttgtcttatatatatacaagtgtgtgatgtttctgaatcagttgaaagttcgccattgtaagataagcatgt
gi|8 : ggagaaaggccgaaaactgtccattctgtgagagaaagaactgat---CCCT-C-GATCAGTTCA-AT-G-GACAGTTTT-C---GGCCTTTCT--CC-------T
gi|8 : atgtaaCGAGGGCCGTAGGCCC--GAGATGA-GTTCTTT---TTCT-T---ACAG---A-AT-G-GACAGTTTA-A---GGCCTTTCT--CCTACATTGTACT-TAA--A--ACA-TAAATTTTCATTATTGT-GG---GA-AGA---TGTCAAACA-A-AGAT-GGATT-GTA-TCAGAATTAATTGTT-------CCAGGG-TAGCAATACATGCATAGTAAAT-TATTGTTTACAGTAA---TAG--ACAGTC-ATAGGTAAGTTAGGG-GTGC----T-CCCGCATTTGGTTTAAT-G-GTATTGTCTT-A-----------GAACTAT-------------CT-ACACAT-TACAA-A--AGCATGGAAAC-TTAACA-GGTGG-GC-TT-ccgtaggcccgagatgagttctttttcttacagaatggacagtttaaggcctttctcctacattgtacttaaaacataaattttcattattgtgggaagatgtcaaacaaagatggattgtatcagaattaattgttccagggtagcaatacatgcatagtaaattattgtttacagtaatagacagtcataggtaagttaggggtgctcccgcatttggtttaatggtattgtcttagaactatctacacattacaaaagcatggaaacttaacaggtgggcttttgtc
gi|9 : atgtaaaggagaaaggccgaaaactgtccattgaactgatTTAATGGA-----CAGTTTATGGAGTTACCA-CAACAATA--ACCTATAGAATGG-ACAATT-CAAACAAAAGGTTTACGTCAC-AATCATGttgtc
Alignments
lowQualScore : 11 3333333 111111 1111111 1 111111 11 444444444444444 44444444444444 111 1111 1 1 111 11 1 1 222222 1 1 8888888888888888888888888888 11 1 111 333333333333333333 111 1 2222 11 2 11 111 1 1 55555555555555555 1 1 1 222 1111 1 1 11 11 1 1 1 1 11 1 1 1 1 11 3333333 1 1111 111 111 11111 11 1 22222 1 1 1111 1 66666666666666666666666 22 111 111 111 11 11111 111 1 2222222 111 111111 1 111 11 5555555555555555555555555555555555555555 2222222222222222 111111 222222 888888888888888888888888 7777777777777777777 1
lowQualScore : 1 11 5 777 2222222 555 3 3 3 222222 55 1111111 3 111111 6 77 00 6 111111111111111 6 6 6 6 3 11111111111111 6 444 7777 0 1 1 0 777 33 0 0 222222 8 3 3 0 0 5555555555555555555555555555 22 0 3 8 8 111 8 8 8 8 8 666666666666666666 3 777 0 0000 33 0 33 777 1 0 0 6 6 66666666666666666 3 7 3 3 555 7 7 8888 3 6 2 88 6 44 2 0 0 3 0 33 0 3 0 0 0 33 3 2222222 2 0 0 2222 8 444 444 8 8 8 0 11111 3 0 11 6 3 1 77777 6 6 1 1 5 0000 99 1 11111111111111111111111 3 6 22 3 99 22 6 444 6 111 6 111 99 6 6 99 6 44 6 66666 888 3 1111111 1 1 6 6 99 99 0 99 6 99 111 99 1 999999 5 777 5 77 888 1 77 444 5 66 5 1111111111111111111111111111111111111111 8 4 4 4 5555555555555555 2 444444 4 000000 2 4 4 555555555555555555555555 5 5 7777777777777777777 6 5 66 5 5 1 0
lowQualScore : . .. . ... ....... ... . . . ...... .. ....... . ...... . .. .. . ............... . . . . . .............. . ... .... . . . . ... .. . . ...... . . . . . ............................ .. . . . . ... . . . . . .................. . ... . .... .. . .. ... . . . . . ................. . . . . ... . . .... . . . .. . .. . . . . . .. . . . . . .. . ....... . . . .... . ... ... . . . . ..... . . .. . . . ..... . . . . . .... .. . ....................... . . .. . .. .. . ... . ... . ... .. . . .. . .. . ..... ... . ....... . . . . .. .. . .. . .. ... .. . ...... . ... . .. ... . .. ... . .. . ........................................ . . . . ................ . ...... . ...... . . . ........................ . . ................... . . .. . . . .
lowQualScore : 0 00 0 000 6666666 888 3 3 3 555555 00 8888888 3 000000 7 77 33 7 000000000000000 7 7 7 7 5 33333333333333 7 000 0000 0 0 0 0 555 88 0 0 222222 8 2 2 0 0 5555555555555555555555555555 55 0 2 0 0 888 0 0 0 0 0 222222222222222222 2 555 0 8888 22 0 88 555 2 0 0 7 7 77777777777777777 3 3 3 3 777 3 3 0000 3 7 0 33 7 33 0 0 0 2 0 88 0 2 0 0 0 22 2 5555555 5 0 8 6666 0 000 000 0 0 0 8 66666 2 8 00 0 8 4 22222 7 7 7 3 7 4444 77 3 77777777777777777777777 5 7 88 2 22 77 7 333 7 777 7 777 22 7 7 22 7 00 7 77777 333 3 7777777 7 7 7 7 22 22 7 22 7 22 777 22 7 222222 7 000 7 44 999 4 99 666 7 22 0 4444444444444444444444444444444444444444 9 4 4 4 4444444444444444 0 000000 4 666666 1 4 4 222222222222222222222222 7 7 0000000000000000000 2 4 11 7 7 0 0
consensus : CGAGGGCNGTAGGCCC--GAGATGA-GTTCTTT---CTCT-CAGAACAG---A-AT-G-GACAGTTTN-C---GGCCTTTCT--CC-------TACT-TAA--A--ACA-T-GATTTTC-CTCTTTT-GG---GATGGA---T-TCAAATA-A-AGAT-GTATT-GTATTCAGAATGAATTGTT-------TC-----T-GCAATA---GTA----AAAT-CNTTGTNCACAG-AA---TAG--ACAGTC-ACAGGTAAGTTAAGG-GTGC----T-CTGGCATTTTGTTTAAT-G-CTATTGTTCT----A-----------GAAC--------GATG-CT-ACACAT-TACAA-A--AGCATGGAAAC-TT-ACA-GGTGG-GC-TT-G-----T--CAGNCAT-ATATA---TACA-AGT---GTGTGATGTTTCTGAA-TCA-GTTG--AAAGTTCG---CCTTTGTAA-GATAAGC-ATGTCTTCCTCTTATGGAGAAAA-CGT-CTAATT-T--T-TAAC-TTGGTC-AAAATTT-AAAGAAA--TGAATATGCGCAAAAATACTGATG-GTTAT-ACTTAGAGT--ACACTTTGGATCTAN-AAATGGAAAATGATGAAACACAAAAT-AAGGA-AAATTTTTTAC-GTG--AA-GATGGGTTCATTTT-C-G-ACA-TTTTTTGAATGAGGAACTT-------ACGAATGC-TAGTCAGGATATTGAAAAAT--ATT-GAGC---ACTTTTTTAAA---CCA-TTGAATCAA-GAG-AATTAAACAAGTTACTG--AGGAAAGGACTAAC--AAAAAAAA-CAAGGAAAGACAAGG-GTT-GGCTA-TGCCATTGTTTA-AAGATTTGGTAGCAAAACAGGAAA-AAAACATATTGGGCCAAAAATTCATTTGGATT-----------------------TAC-ATCAACAAGAAG--ATATTTTGAAAATG-A-G-CGATT-A---TTCATGGGAATGT-TAAATGAA---GTGACACA--AAAT-GCAGAG-CAAGAGAA--AAAAGT-GAAAA-GTACCA-----GGGACTGG---AA-TAC-------CACTAGTGAAATTAAAATC-AAATCTGGCAATGTTTC-TTTGGAGTTC--AA--GTTTTGAAGATACG--TAAATTAAATGTTGCA-TTT--CA---TG--TATTTGTTGTTTTCC------CCCTTGGGTACA-TTCCAA-TCTTTA-CCTG-GCA-CCGTCC-AT--TCT--NTTTGT-TGT-AAACTGT-CCAT------------------T-CTG-----ATTGA-----AAAAAAAAAACTG-T-CCA-T-TC---TT----TAA----AAGAATG-----GACAGTTC-T------TCAAAAAGAATG-GAC-AGTT--TTTTC---A-----AGAA-AGACACTT-ACAGGTAA-CTTAATGGA-----T-GT-----GAGTTAGCAACGACAATA--ACCTATAGAATGG-ACAATT-CAAACAAAAGGNTTACGTCAC-AATCATG
Reference ( family-6810 ) : CGAGGGCNGTAGGCCC--GAGATGA-GTTCTTT---CTCT-CAGAACAG---A-AT-G-GACAGTTTN-C---GGCCTTTCT--CC-------TACT-TAA--A--ACA-T-GATTTTC-CTCTTTT-GG---GATGGA---T-TCAAATA-A-AGAT-GTATT-GTATTCAGAATGAATTGTT-------TC-----T-GCAATA---GTA----AAAT-CNTTGTNCACAG-AA---TAG--ACAGTC-ACAGGTAAGTTAAGG-GTGC----T-CTGGCATTTTGTTTAAT-G-CTATTGTTCT----A-----------GAA---------GATG-CT-ACACAT-TACAA-A--AGCATGGAAAC-TT-ACA-GGTGG-GC-TT-G-----T--CAGNCAT-ATATA---TACA-AGT---GTGTGATGTTTCTGAA-TCA-GTTG--AAAGTTCG---CCTTTGTAA-GATAAGC-ATGTCTTCCTCTTATGGAGAAAA-CGT-CTAATT-T--T-TAAC-TTGGTC-AAAATTT-AAAGAAA--TGAATATGCGCAAAAATACTGATG-GTTAT-ACTTAGAGT--ACACTTTGGATCTAN-AAATGGAAAATGATGAAACACAAAAT-AAGGA-AAATTTTTTAC-GTG--AA-GATGGGTTCATTTT-C-G-ACA-TTTTTTGAATGAGGAACTT-------ACGAATGC-TAGTCAGGATATTGAAAAAT--ATT-GAGC---ACTTTTTTAAA---CCA-TTGAATCAA-GAG-AATTAAACAAGTTACTG--AGGAAAGGACTAAC--AAAAAAAA-CAAGGAAAGACAAGG-GTT-GGCTA-TGCCATTGTTTA-AAGATTTGGTAGCAAAACAGGAAA-AAAACATATTGGGCCAAAAATTCATTTGGATT-----------------------TAC-ATCAACAAGAAG--ATATTTTGAAAATG-A-G-CGATT-A---TTCATGGGAATGT-TAAATGAA---GTGACACA--AAAT-GCAGAG-CAAGAGAA--AAAAGT-GAAAA-GTACCA-----GGGACTGG---AA-TAC-------CACTAGTGAAATTAAAATC-AAATCTGGCAATGTTTC-TTTGGAGTTC--AA--GTTTTGAAGATACG--TAAATTAAATGTTGCA-TTT--CA---TG--TATTTGTTGTTTTCC------CCCTTGGGTACA-TTCCAA-TCTTTA-CCTG-GCA-CCGTCC-AT--TCT--NTTTGT-TGT-AAACTGT-CCAT------------------T-CTG-----ATTGA-----AAAAAAAAAACTG-T-CCA-T-TC---TT----TAA----AAGAATG-----GACAGTTC-T------TCAAAAAGAATG-GAC-AGTT--TTTTC---A-----AGAA-AGACACTT-ACAGGTAA-CTTAATGGA-----T-GT-----GAGTTAGCAACGACAATA--ACCTATAGAATGG-ACAATT-CAAACAAAAGGNTTACGTCAC-AATCATG
gi|1 : A-GTTCTTTTTCCTCC-CA---CAG---A-GT-GAGACAGTTTTTC---GGCCTTTCT--CC-------T
gi|1 : gtaa-TAT-AAACTGT-CCACG-----------------T-CTG------TTGA-----AGAGAAAGAACT-----CA-TCTC---GT----GGA----CATACCGCCCTCGACAGTTC-TTTTTCCTCCCACAGAGTGAGAC-AGTT--TTTgtcgagggcggtatgtccacgagatgagttctttctcttcaacagacgtggacagtttatacaggcctttctgccctattctaaggagcaatgattttccccttttggtaggatgggattttcagataatggattgtatttgaattcagatagaattgttcaggtcgtcatacatgcaaaagtaaaaatattgtttacagaagaataagaacagtccacataaaagttaaggcgtgtaaattgctggcattttgttaatggctattgtttttataaggatctcacgtggatggctcacacatctacaaagcagcgaagaaacgttacaaggtggcgctttgtttcagactattatacagagtaaggtgtgatgtttttgaatcagttgctaaagttcgaactccttgtaagataagcaagtcttcctcttatggagaaaagcgtactaagtattataactggtcaaaatttaaagaaacctgaatatgcgcaaaatactgatgtgttatataagtgcactttggatctaagaaatggaaaatagtgaaacacaaaataaggacaaattttttacgtagaaagatgggttcattttcgacattttttgaatgaggtactttacatgtacgaatgcctagtcaggatattgaaaaattaattgagcatttttaaaaagccaattgaatcaagagaattaagcaagttactgagaaaggactaaccaaaagaaaacaggaaaggcaaaggtgactatgccattgtttaaagttggtagaaaacaggataaaacatattgggccaaaattcatttggattttttttttttttttttttttttttaccatcacaagatattttgaaaatgaggcgattattcatgggaatgttaaatgaagtgacacaaaatgcagaacaagaggaaaaagtggaaaagtaacgcagctgggactgaaatacatgtatgcactagtgaaattaaaattcaatctggcaatgtttcttttggagttcagttttgaagatacgtttaaattaaatgttgcatttcccatgtatttgttgttttcctccttgggtacattccaattttttacctggcatgtccattgtcttgttttgttttgtcctgtcattctgattgaaaaaaaaacctgttccattcttaaaagaatggaaagttctttcaaaaagaatggacagtttctcttcagaagaatagtcacttacaggtaaattaatgggcagtttgtgagttagcaaccaatacctatagaatggacaattcaaaccaaagggttacgtcacaaatcatgtttttaaatgtacgctatgaagaatgtgt
gi|1 : gtaaaggagaaaggccgCGAGGGCGGTATGTCCACGAGATGA-GTTCTTT---CTCTTCA--ACAG---ACGT-G-GACAGTTTA-TACAGGCCTTTCTGCCC-------TATTCTAAGGA--GCAAT-GATTTTC-CCCTTTT-GGTAGGATGGGATTT-TCAGATA-ATGGATTGTATTTGAATTCAGATAGAATTGTTCAGGTCGTCATACAT-GCAAAA---GTA----AAAA-TATTGTTTACAG-AAGAATAAGAACAGTCCACATAAAAGTTAAGGCGTGTAAATTGCTGGCATTTTGTT-AAT-GGCTATTGTTTTTATAA-----------GGATCTCACGTGGATGGCTCACACATCTACAA-AGCAGCGAAGAAACGTT-ACAAGGTGGCGC-TTTG-----TTTCAGAC-T-AT-TA---TACAGAGTAAGGTGTGATGTTTTTGAA-TCA-GTTGCTAAAGTTCGAACTCCTTGTAA-GATAAGC-AAGTCTTCCTCTTATGGAGAAAAGCGTACTAAGTAT--TATAAC-T-GGTC-AAAATTT-AAAGAAACCTGAATATGCGCAAAA-TACTGATGTGTTAT-A--TA-AGT--GCACTTTGGATCTAAGAAATGGAAAATAGTGAAACACAAAAT-AAGGACAAATTTTTTAC-GTAGAAA-GATGGGTTCATTTT-C-G-ACA-TTTTTTGAATGAGGTACTTTACATGTACGAATGCCTAGTCAGGATATTGAAAAATTAATT-GAGC---A--TTTTTAAAAAGCCAATTGAATCAA-GAG-AATTAAGCAAGTTACTG--A-GAAAGGACTAACCAAAAGAAAA-C-AGGAAAGGCAAAG-G-T-GACTA-TGCCATTGTTTA-AAG--TTGGTAG-AAAACAGG-AT-AAAACATATTGGGCC-AAAATTCATTTGGATTTTTTTTTTTTTTTTTTTTTTTTTTACCATC-ACA---AG--ATATTTTGAAAATG-AGG-CGATT-A---TTCATGGGAATGT-TAAATGAA---GTGACACA--AAAT-GCAGAA-CAAGAGGA--AAAAGTGGAAAA-GTAACGCAGCTGGGACTGA---AA-TACATGTATGCACTAGTGAAATTAAAATT-CAATCTGGCAATGTTTCTTTTGGAGTTC---A--GTTTTGAAGATACGTTTAAATTAAATGTTGCA-TTTCCCA---TG--TATTTGTTGTTTTCC------TCCTTGGGTACA-TTCCAATTTTTTA-CCTG-GCA--TGTCC-ATTGTCTTGTTTTGT-TTT-GTCCTGT--CAT------------------T-CTG-----ATTG------AAAAAAAAACCTGTT-CCA-T-TC----T----TAA----AAGAATG-----GAAAGTTCTT------TCAAAAAGAATG-GAC-AGTTTCTCTTCAG-A-----AGAATAGTCACTT-ACAGGTAA-ATTAATGGGCAGTTT-GT-----GAGTTAGCAAC--CAAT---ACCTATAGAATGG-ACAATT-CAAACCAAAGGGTTACGTCACAAATCATGcaggcctttctgccctattctaaggagcaatgattttccccttttggtaggatgggattttcagataatggattgtatttgaattcagatagaattgttcaggtcgtcatacatgcaaaagtaaaaatattgtttacagaagaataagaacagtccacataaaagttaaggcgtgtaaattgctggcattttgttaatggctattgtttttataaggatctcacgtggatggctcacacatctacaaagcagcgaagaaacgttacaaggtggcgctttgtttcagactattatacagagtaaggtgtgatgtttttgaatcagttgctaaagttcgaactccttgtaagataagcaagtcttcctcttatggagaaaagcgtactaagtattataactggtcaaaatttaaagaaacctgaatatgcgcaaaatactgatgtgttatataagtgcactttggatctaagaaatggaaaatagtgaaacacaaaataaggacaaattttttacgtagaaagatgggttcattttcgacattttttgaatgaggtactttacatgtacgaatgcctagtcaggatattgaaaaattaattgagcatttttaaaaagccaattgaatcaagagaattaagcaagttactgagaaaggactaaccaaaagaaaacaggaaaggcaaaggtgactatgccattgtttaaagttggtagaaaacaggataaaacatattgggccaaaattcatttggattttttttttttttttttttttttttaccatcacaagatattttgaaaatgaggcgattattcatgggaatgttaaatgaagtgacacaaaatgcagaacaagaggaaaaagtggaaaagtaacgcagctgggactgaaatacatgtatgcactagtgaaattaaaattcaatctggcaatgtttcttttggagttcagttttgaagatacgtttaaattaaatgttgcatttcccatgtatttgttgttttcctccttgggtacattccaattttttacctggcatgtccattgtcttgttttgttttgtcctgtcattctgattgaaaaaaaaacctgttccattcttaaaagaatggaaagttctttcaaaaagaatggacagtttctcttcagaagaatagtcacttacaggtaaattaatgggcagtttgtgagttagcaaccaatacctatagaatggacaattcaaaccaaagggttacgtcacaaatcatgtttttaaatgtacgctatgaagaatgtgt
gi|10 : gtaaaggagaaaggccgaaaaactgtctcactctgtgggaggaaaaagaactgtTTCTTT---CTCT-CA---CAG---A-TT-G-GACAGTTTT-C---TGCCTTTCT--CC-------Ttttttaaatgtacgctatgaagaatgtgt
gi|10 : aAAACTG-T-CCA-T-TC---TTTCTCTCA----CAGATTG-----GACAGTTT-T------tggacagtttgtgatctttctcctacttaaaacatgatttctcttttgaaataaagatgtattgtattcagaatgattttttttacaattagcatacat
gi|10 : aaggagaaaggcagAGAA-AG---A-AT-G-GACAGTTTG-T---GATCTTTCT--CC-------TACT-TAA--A--ACA-T-GATTT---CTCTTTT-G-----------------AAATA-A-AGAT-GTATT-GTATTCAGAATG-ATTTTT-------TT-----T-ACAATgtgatctttctcctacttaaaacatgatttctcttttgaaataaagatgtattgtattcagaatgattttttttacaattagcatacat
gi|11 : aaggagaaaggcagaaaactgtccaatctgtgagA--ACCTATAGAATGG-ACAATT-CAAACAAAAGAACTACGTCAC-AGTCATGtagcatacat
gi|11 : A-GTTCTTT---CTC------ACAG---A-AT-G-GACAGTTTG-A---GACTTTTatttaaaagtctcaaactgtccattctgtgagaaagaactactgccgtcgattagtcctt
gi|12 : aacctatagaatggacaattcaaacaaaagaactacgtcacagtcatgatttGAA-AG---A-AT-G-GACAGTT-G-T---GATCTTTCT--CC-------TACTCTAA--AGAACA-T-GATTTTC--TCTTTT-G-----------------AAATATA-AGAT-GTATT-GTATTAAAGAGGTTTTTTT-------TT-----T-ACAATA---GCA----actgccgtcgattagtcctt
gi|13 : ATCA-GTTCTTT---CTCT----GACAT---A-AT-A-GACAGTTTT-C---GGCTTCTAT--CT-------TA
gi|14 : gtaattCCTTGGGTACA-TTCCAA-TCTTTA-CCTG-ACA-CCGTCT-AT--GCT--CTTTGgggggttgagaccagttgtttctttcacagaatg
gi|15 : -AGACACTT-ACAGGTAA-CTTAATG------------------CTTAGC-ACGACAATA--ACCTATA
gi|16 : -TGCCATTGTTTA-AAG-TTTGGTAGCAAAACAGAAAA-AAAA
gi|2 : CGAGGTCTGTAGGCT---GAGATGACGTTCTTT----TCT-CAGAACAG---A-ATTG-GACAATT-A-A---AGCCTTTCT--CC-------TACT-TAA--A---CA-T-TATTTTC-TTTTTTTTGG---GATGGA---T-TCAAATA-A-AGAT-GTATT-GTATTCAGAATGAATTGTT-------TC-----T-GCAATA---GTA----AAATTCTTTGTGCACAG-AA---TAG--ACAGTC-ACAGGTAAGTTAAGG-GTGC----T-CTGGCATTTTGTTTA-T-G-CTATTGTTCT----ATAAAAAAAAAAGAA---------GATG-CT-ACAC-T-TACAA-A---GCATGGAAGC-TT-ACA-GGTGG-GC-TT-G-----T--CAATTAT-ATATA---TACA-AGT---GTGTGATGTTTCTGA--TCAAGTTG--AAAGTTCG---CCTTTGTAAAGATAAGCCATGTAATC-TCTTATGTA-AAAA-CGT-TT--TT-T--T-CAAC-TTGGTCGAAAATTT-AAAGAA---------TGCGCAAAAATACTAATG-GT-AT-ACTTAAAGTTGACACTTTGGATCTAG-AAATGGAAAAT-AGGAAACACAAAATCAAGGA-AAATTTTTTAC-GTG--AA-GTTGTGTTCATTTTTC-G-ACATTTTTTTGAATGAGGAACTT-------ACGAATGC-TAGTCAGGATATTG-AAAAT--ATT-GAGC---ACTTTTTTATA---CCA-TTGAATCAG-AGG-AATTAAACAAGTT--TGAAAGAAAAGGACTAAC--AAGAAAAA-CAAGGAAAGGCAACA-GTT-GGCTA-TGTCATTGTTTA-AAGATTTGGTAGCAAAACAGAAAA-AAAACATATTGGGGAAAAAATTTATTTGGATT-----------------------T-C-ATCAACAAG-AG--ATATTTCGCAAATGAA-G-CGATTAA---TTCATGGAAATGT-TAGATGAA---GTGACACA--AAAT-GCAGAG-CAAGAGAA--GAAAGT-TAAAA-GTA-CA-----GGGACTGG---AA-TAC-------CAC-AGTG-AATTAAAATC-AAATCTGGCAATTTTCT-TTTGGAGTTC--AATTTTTTTGAAGATATG--TAAATTAAATGTTGCA-TTT--CA---TG--TATTTGTT-TTTCCC------CCCTTGGGTACA-TTCCAA-T-TTTA-CCTG-ACA-CCGTCTAAT--GCT--CTTTGT-TGTAAAACTGT-TCAT------------------TCCTG-----ATTGA-----AAAAAAAAAACTC-T-CCA-T-TC---TT----TAA----AAGCATG-----AACAGTTC-T------TCATAAAGAATG-GACAAGTT--TTTTCAAGA-----AGAA-AGACACTTAACAGGTAA-TTTAATGAAGTT--T-GT-----GAGTTAGCAACGACAATA--ACCTATAGAATGGAACAATT-CAAA-AAAATATTTACGTCAC-AATCATGa
gi|3 : AAGAAATG-GAC-AGTT--TTTTT---ACAGTAAGAATAGACACTT-ACAGGTAAGCTTAAC--------T-GC--------TTAGGCACGAC-ATA--ACCTATAAGATG
gi|3 : tgT-TACAGTA--AGAATAGACAC-TT-ACA-GGTAA-GC-TT-AACTGCT--TAGGCACGACATAACCTATA-AG----ATGTGATGTTTCTGAAATCATGTTG--AAAGTTCG---CCTTTGTAA-GATAAGC-ATGTCTTCCTCTTATGGAGAAAA-------AATT-TTCT-TAACTTTGGTT-CAAATTTCAAAGAAA--TGAATATGCGCAAAAATACTGA-G-G-TATAACTTAGTGT--ACACTTT-GATCTAC-GAATGGAAAATGATGAACCACAAAAT-AAGGA-AAATCTTTTACAGTG--AACGATGGGTTTA--TT-CGG-ACA--CTTTTGACTGAGGAAACT-------ACGAAT-C-TAGTCAGGATATTGAAAAAT--ATTAAAGCAAAACTTTTTAAAA---ACA-TTGAATCACTGAG-AATTAAACAAGTTACTG--AG--AAAGACTAAC--AAAAAAAATCAAGGAAAGACTAAG-GTTGGGCTAGTGCCATTGTTTATAAGTTTGGGTAGCAAAGCAGGAAATAAAACA-AATGGGCACAAAATTCCTTTGGATT-----------------------TAC-ATC-ACAAGAAGTTATATTTT-AAAATG-A-GCCGATT-ATAGTTCATGGGAATGTGTAAGTGAAAATGTGACAAC--AAATGGCAGAGACAAAAGAA--AAAGAT-GAAAAGGTACCA-----GGGGCTGAGTCAA-TAC-------CACTAG-GAAA-TAAAATCAAAATCTGGCAATG-TTC-TTTGGAATTTCAAA--GTTTTGAAGATATG--T--ATTAAATGTTGCATTTT--CAGTCTG--TA-TTGTTGTTTTCC------CTCTTGGGTACATTTCCAA-T-TTTA-CCT--TCC-TTGTCC-AT--TCTG-TTTTGT-TGT-AAACTGTCCCAT------------------T-CTG-----ATTG--------AAAAAAACCTG-TCCCA-T-TC----T----TAA----AAGAAT------GACCGTTC-T------TCAAGAAGAATA-GAC-A------------------------------TT-ACAGGTAA-CTTAA---A-----T-G--------GTTAGCAACAACAATAACACCTATAGAAT-G-ACAATT-CAAtgatgtttctgaaatcatgttgaaagttcgcctttgtaagataagcatgtcttcctcttatggagaaaaaattttcttaactttggttcaaatttcaaagaaatgaatatgcgcaaaaatactgaggtataacttagtgtacactttgatctacgaatggaaaatgatgaaccacaaaataaggaaaatcttttacagtgaacgatgggtttattcggacacttttgactgaggaaactacgaatctagtcaggatattgaaaaatattaaagcaaaactttttaaaaacattgaatcactgagaattaaacaagttactgagaaagactaacaaaaaaaatcaaggaaagactaaggttgggctagtgccattgtttataagtttgggtagcaaagcaggaaataaaacaaatgggcacaaaattcctttggatttacatcacaagaagttatattttaaaatgagccgattatagttcatgggaatgtgtaagtgaaaatgtgacaacaaatggcagagacaaaagaaaaagatgaaaaggtaccaggggctgagtcaataccactaggaaataaaatcaaaatctggcaatgttctttggaatttcaaagttttgaagatatgtattaaatgttgcattttcagtctgtattgttgttttccctcttgggtacatttccaattttaccttccttgtccattctgttttgttgtaaactgtcccattctgattgaaaaaaacctgtcccattcttaaaagaatgaccgttcttcaagaagaatagacattacaggtaacttaaatggttagcaacaacaataacacctatagaatgacaattcaaca
gi|4 : tgaagaaatggacagtttttACACAGAAT-AAAGA-AAACTT---AC-CTG--AA-GATGGTTTCATTTT-C-GGACA-TTTCT--GATGAGGAACTT-------ATGAATGC-TAGTCAGGATATTGAAAA-T--ATT-GAGC---GCTTTCTTAAA---CCA-TTGAATCAA-GAGGAATTAAACAAGTTACTG--AAGAAA----T--------------CGAGGAATGACAAGG--TG-GGCTA-TGCCATTGTTTT-GAAATT----AGCAAAACAGGAAA-TAAA--TATTGGACCATAA-TTCATTTGGATT-----------------------TAC-ATCA-CAAGAAG--ATATTTTGAAAATA-A------TT-A---TTCATGGGAACGT-TAAATGAA---GTGACACA--AAAT-GCAGAG-GAGGAGAACGAAAAAT-GAAA--GAAACA-----GGGACTGG---AAATAC-------TACTAGTGAAATTAAAATC-AAATCTGGCAATGTTTT-TTAGGAGTTC--AA--GTTTTGAAGATATG--TAAATTAAATGTTGCA-TTT--CA---TGTATATTTGTTG-TTTAC------CCCTTGGGTACA-TTCCAA-ACTTTA-CCTG-GCA-CTGTCC-AT--TCT--GTTTGTGTGT--AACTAT-CCAT------------------T-CTGTTT--GTTG-------------TAACTG-T-CCA-T-TTTGATT----TAA----AAAA-----------AATT--------------AAGAATG-GAT-AAT----------------------AGACACTT-ACAGGTAA-CTTAATGGA-----C---------AGTTAGC-ACAACAATA--ACCTATAGAATGG-ACAATT-CAAACAAAca
gi|5 : TCAGGATATTGAAAA-T--ATT-AAGC---ACTTTTTTAAA---CCA-TTGAATCAA-GAG-AATTAAACAAGTTACTG--AAGAAAGGACTAAC--AAAAAAAAACAAGGAAAGACAAGGAG---GGCTA-TGCCAATGTATA-AAGATT-GGAAGCAAAGCAGGAAA-AAA-CAAATTGGGCCAAAA-TTACTTTGGAAT-----------------------TAC-ATCA-CAAGAAG--ATATTTTGAAAATG-A-G-CGATT-A---TTCATGGGAATGT-TAAATGAA---GTGACACA--AAAT-GCAGAG-CAAAAGAA--AAAGAT-GAAAA-GTACCA-----GGGGCTGGC--AA-TAC-------CACTAGTGAAATTAAAATC-AAATCTGGCAATGTTTC-TTTGGATTTC--AA--GTTTTGAAGATATG--TAAATTAAATGTTGCA-TTT--CA---TG--TATTTGTTGTTTTCC------CTCTTGGGTACA-TTCCAA-TCTTTAGCCTGTTCATTTTTCC-AT--TCT--GTTGTT-TGT--AACTGT-CCAT------------------T-CTG-----ATTG---------AAAAAACCTG-T-CCA-T-TC----T----TAA----AAGAATG-----CACATTCT-T------TCAAGAAGAAT-------------------------------AGACACTT-ACA-GTAA-CTTAAT--------T----------GTTAGCAA--ACAATA--ACCTATA-AATGG-ACAATTCCAAACAAt
gi|6 : AAAACAGGAAG-AA-------TG---------TTCATT-AGATT-----------------------TTC-ACCA-TAAGAAG--GCATTT-AAAAATG-A-A-TGATT-A---TTTATAGGAATAT-GAAATGTA---GAGACACACAAAAT-ACAGAG-GAAGAGAA--ACGAGT-GAAG--GTACCA-----GGGACTGG---AAACAT-------CACTAATGGAACCAAAATC-AAATCTGGCGATGTGTC-CTTCGAGTTC--AA--GTTTTGAAGATACG--TAAACTAAATG----------------------TTTGTTGCCCCCCCCCCCTCCCTTGGGTACA-CTGCAA-TCTTTA-CATG-GCA-CTTTCTAAT--TCT--ATTTGT-TGT--AATTGT-CCATCATACATGTACCCCCACCT-CAGAGAATATTGAGAGAGAAAAAAACAACTG-T-CCA-T-TC---TT-----------AATAATG-----GACAGTTC-T------TAAAAAAGAATA-GAC-ACTT--tta
gi|7 : GCCC--TCGATCA-GTTCTTT---CTCT-CA---CAG---A-AT-G-GACAGTTTT-C---GGCCTTTCT--CC-------a
gi|7 : -AAACTGT-CCAT------------------T-CTG-------TG------AGAGAAAGAACTGAT-CGAGG-GC---GG----TAGGCCCGAG-ATG--------AGTTC-TTTC---TCAGACAGAATG-GAC-AATT--Tggtaggcccgagatgagttctttctcagacagaatggacaatttaaagcctttctcctacttaaaacattattttccttttttgggatggattcaaataaagatgtattgtattcagaatgaattgtttctgcaatagtaaaatctttgtgcacagaatagacagtcacaggtaagttaagggtgctctgcattttgtttaatggctattgttctagaagatgctacacattacaaaagcatggaagcttacaggtgggctttgtcttatatatatacaagtgtgtgatgtttctgaatcagttgaaagttcgccattgtaagataagcatgt
gi|7 : ggagaaaggccgaCGAGGGCGGTAGGCCC--GAGATGA-GTTCTTT---CTC---AGA-CAG---A-AT-G-GACAATTTA-A---AGCCTTTCT--CC-------TACT-TAA--A--ACA-T-TATTTTC-CTTTTTT-GG---GATGGA---T-TCAAATA-A-AGAT-GTATT-GTATTCAGAATGAATTGTT-------TC-----T-GCAATA---GTA----AAAT-CTTTGTGCACAG-AA---TAG--ACAGTC-ACAGGTAAGTTAAGG-GTGC----T-CT-GCATTTTGTTTAATGG-CTATTGTTCT----A-----------GAA---------GATG-CT-ACACAT-TACAA-A--AGCATGGAAGC-TT-ACA-GGTGG-GCTTT-G-----T--C--TTAT-ATATA---TACA-AGT---GTGTGATGTTTCTGAA-TCA-GTTG--AAAGTTCG---CCATTGTAA-GATAAGC-ATGTaaagcctttctcctacttaaaacattattttccttttttgggatggattcaaataaagatgtattgtattcagaatgaattgtttctgcaatagtaaaatctttgtgcacagaatagacagtcacaggtaagttaagggtgctctgcattttgtttaatggctattgttctagaagatgctacacattacaaaagcatggaagcttacaggtgggctttgtcttatatatatacaagtgtgtgatgtttctgaatcagttgaaagttcgccattgtaagataagcatgt
gi|8 : ggagaaaggccgaaaactgtccattctgtgagagaaagaactgat---CCCT-C-GATCAGTTCA-AT-G-GACAGTTTT-C---GGCCTTTCT--CC-------T
gi|8 : atgtaaCGAGGGCCGTAGGCCC--GAGATGA-GTTCTTT---TTCT-T---ACAG---A-AT-G-GACAGTTTA-A---GGCCTTTCT--CCTACATTGTACT-TAA--A--ACA-TAAATTTTCATTATTGT-GG---GA-AGA---TGTCAAACA-A-AGAT-GGATT-GTA-TCAGAATTAATTGTT-------CCAGGG-TAGCAATACATGCATAGTAAAT-TATTGTTTACAGTAA---TAG--ACAGTC-ATAGGTAAGTTAGGG-GTGC----T-CCCGCATTTGGTTTAAT-G-GTATTGTCTT----A-----------GAAC--------TAT--CT-ACACAT-TACAA-A--AGCATGGAAAC-TTAACA-GGTGG-GC-TT-ccgtaggcccgagatgagttctttttcttacagaatggacagtttaaggcctttctcctacattgtacttaaaacataaattttcattattgtgggaagatgtcaaacaaagatggattgtatcagaattaattgttccagggtagcaatacatgcatagtaaattattgtttacagtaatagacagtcataggtaagttaggggtgctcccgcatttggtttaatggtattgtcttagaactatctacacattacaaaagcatggaaacttaacaggtgggcttttgtc
gi|9 : atgtaaaggagaaaggccgaaaactgtccattgaactgatTTAATGGA-----CAGTTTATGGAGTTACCA-CAACAATA--ACCTATAGAATGG-ACAATT-CAAACAAAAGGTTTACGTCAC-AATCATGttgtc
Alignments
lowQualScore : 11 3333333 111111 1111111 1 111111 11 444444444444444 44444444444444 111 1111 1 1 111 11 1 1 222222 1 1 888888888888888888888888888888888 1 111 333333333333333333 111 1 2222 11 2 11 111 1 1 55555555555555555 1 1 1 222 1111 1 1 11 11 1 1 1 1 11 1 1 1 1 11 3333333 1 1111 111 111 11111 11 1 22222 1 1 1111 1 66666666666666666666666 22 111 111 111 11 11111 111 1 2222222 111 111111 1 111 11 5555555555555555555555555555555555555555 2222222222222222 111111 222222 888888888888888888888888 7777777777777777777 1
lowQualScore : 1 11 5 777 2222222 555 3 3 3 222222 55 1111111 3 111111 6 77 00 6 111111111111111 6 6 6 6 3 11111111111111 6 444 7777 0 1 1 0 777 33 0 0 222222 8 3 3 0 0 000000000000000000000000000000000 0 3 8 8 111 8 8 8 8 8 666666666666666666 3 777 0 0000 33 0 33 777 1 0 0 6 6 66666666666666666 3 7 3 3 555 7 7 8888 3 6 2 88 6 44 2 0 0 3 0 33 0 3 0 0 0 33 3 2222222 2 0 0 2222 8 444 444 8 8 8 0 11111 3 0 11 6 3 1 77777 6 6 1 1 5 0000 99 1 11111111111111111111111 3 6 22 3 99 22 6 444 6 111 6 111 99 6 6 99 6 44 6 66666 888 3 1111111 1 1 6 6 99 99 0 99 6 99 111 99 1 999999 5 777 5 77 888 1 77 444 5 66 5 1111111111111111111111111111111111111111 8 4 4 4 5555555555555555 2 444444 4 000000 2 4 4 555555555555555555555555 5 5 7777777777777777777 6 5 66 5 5 1 0
lowQualScore : . .. . ... ....... ... . . . ...... .. ....... . ...... . .. .. . ............... . . . . . .............. . ... .... . . . . ... .. . . ...... . . . . . ................................. . . . . ... . . . . . .................. . ... . .... .. . .. ... . . . . . ................. . . . . ... . . .... . . . .. . .. . . . . . .. . . . . . .. . ....... . . . .... . ... ... . . . . ..... . . .. . . . ..... . . . . . .... .. . ....................... . . .. . .. .. . ... . ... . ... .. . . .. . .. . ..... ... . ....... . . . . .. .. . .. . .. ... .. . ...... . ... . .. ... . .. ... . .. . ........................................ . . . . ................ . ...... . ...... . . . ........................ . . ................... . . .. . . . .
lowQualScore : 0 00 0 000 6666666 888 3 3 3 555555 00 8888888 3 000000 7 77 33 7 000000000000000 7 7 7 7 5 33333333333333 7 000 0000 0 0 0 0 555 88 0 0 222222 8 2 2 0 0 000000000000000000000000000000000 0 2 0 0 888 0 0 0 0 0 222222222222222222 2 555 0 8888 22 0 88 555 2 0 0 7 7 77777777777777777 3 3 3 3 777 3 3 0000 3 7 0 33 7 33 0 0 0 2 0 88 0 2 0 0 0 22 2 5555555 5 0 8 6666 0 000 000 0 0 0 8 66666 2 8 00 0 8 4 22222 7 7 7 3 7 4444 77 3 77777777777777777777777 5 7 88 2 22 77 7 333 7 777 7 777 22 7 7 22 7 00 7 77777 333 3 7777777 7 7 7 7 22 22 7 22 7 22 777 22 7 222222 7 000 7 44 999 4 99 666 7 22 0 4444444444444444444444444444444444444444 9 4 4 4 4444444444444444 0 000000 4 666666 1 4 4 222222222222222222222222 7 7 0000000000000000000 2 4 11 7 7 0 0
consensus : CGAGGGCNGTAGGCCC--GAGATGA-GTTCTTT---CTCT-CAGAACAG---A-AT-G-GACAGTTTN-C---GGCCTTTCT--CC-------TACT-TAA--A--ACA-T-GATTTTC-CTCTTTT-GG---GATGGA---T-TCAAATA-A-AGAT-GTATT-GTATTCAGAATGAATTGTT-------TC-----T-GCAATA---GTA----AAAT-CNTTGTNCACAG-AA---TAG--ACAGTC-ACAGGTAAGTTAAGG-GTGC----T-CTGGCATTTTGTTTAAT-G-CTATTGTTCT-A-----------GAA-GAT------------GCT-ACACAT-TACAA-A--AGCATGGAAAC-TT-ACA-GGTGG-GC-TT-G-----T--CAGNCAT-ATATA---TACA-AGT---GTGTGATGTTTCTGAA-TCA-GTTG--AAAGTTCG---CCTTTGTAA-GATAAGC-ATGTCTTCCTCTTATGGAGAAAA-CGT-CTAATT-T--T-TAAC-TTGGTC-AAAATTT-AAAGAAA--TGAATATGCGCAAAAATACTGATG-GTTAT-ACTTAGAGT--ACACTTTGGATCTAN-AAATGGAAAATGATGAAACACAAAAT-AAGGA-AAATTTTTTAC-GTG--AA-GATGGGTTCATTTT-C-G-ACA-TTTTTTGAATGAGGAACTT-------ACGAATGC-TAGTCAGGATATTGAAAAAT--ATT-GAGC---ACTTTTTTAAA---CCA-TTGAATCAA-GAG-AATTAAACAAGTTACTG--AGGAAAGGACTAAC--AAAAAAAA-CAAGGAAAGACAAGG-GTT-GGCTA-TGCCATTGTTTA-AAGATTTGGTAGCAAAACAGGAAA-AAAACATATTGGGCCAAAAATTCATTTGGATT-----------------------TAC-ATCAACAAGAAG--ATATTTTGAAAATG-A-G-CGATT-A---TTCATGGGAATGT-TAAATGAA---GTGACACA--AAAT-GCAGAG-CAAGAGAA--AAAAGT-GAAAA-GTACCA-----GGGACTGG---AA-TAC-------CACTAGTGAAATTAAAATC-AAATCTGGCAATGTTTC-TTTGGAGTTC--AA--GTTTTGAAGATACG--TAAATTAAATGTTGCA-TTT--CA---TG--TATTTGTTGTTTTCC------CCCTTGGGTACA-TTCCAA-TCTTTA-CCTG-GCA-CCGTCC-AT--TCT--NTTTGT-TGT-AAACTGT-CCAT------------------T-CTG-----ATTGA-----AAAAAAAAAACTG-T-CCA-T-TC---TT----TAA----AAGAATG-----GACAGTTC-T------TCAAAAAGAATG-GAC-AGTT--TTTTC---A-----AGAA-AGACACTT-ACAGGTAA-CTTAATGGA-----T-GT-----GAGTTAGCAACGACAATA--ACCTATAGAATGG-ACAATT-CAAACAAAAGGNTTACGTCAC-AATCATG
Reference ( family-6810 ) : CGAGGGCNGTAGGCCC--GAGATGA-GTTCTTT---CTCT-CAGAACAG---A-AT-G-GACAGTTTN-C---GGCCTTTCT--CC-------TACT-TAA--A--ACA-T-GATTTTC-CTCTTTT-GG---GATGGA---T-TCAAATA-A-AGAT-GTATT-GTATTCAGAATGAATTGTT-------TC-----T-GCAATA---GTA----AAAT-CNTTGTNCACAG-AA---TAG--ACAGTC-ACAGGTAAGTTAAGG-GTGC----T-CTGGCATTTTGTTTAAT-G-CTATTGTTCT-A-----------GAACGAT------------GCT-ACACAT-TACAA-A--AGCATGGAAAC-TT-ACA-GGTGG-GC-TT-G-----T--CAGNCAT-ATATA---TACA-AGT---GTGTGATGTTTCTGAA-TCA-GTTG--AAAGTTCG---CCTTTGTAA-GATAAGC-ATGTCTTCCTCTTATGGAGAAAA-CGT-CTAATT-T--T-TAAC-TTGGTC-AAAATTT-AAAGAAA--TGAATATGCGCAAAAATACTGATG-GTTAT-ACTTAGAGT--ACACTTTGGATCTAN-AAATGGAAAATGATGAAACACAAAAT-AAGGA-AAATTTTTTAC-GTG--AA-GATGGGTTCATTTT-C-G-ACA-TTTTTTGAATGAGGAACTT-------ACGAATGC-TAGTCAGGATATTGAAAAAT--ATT-GAGC---ACTTTTTTAAA---CCA-TTGAATCAA-GAG-AATTAAACAAGTTACTG--AGGAAAGGACTAAC--AAAAAAAA-CAAGGAAAGACAAGG-GTT-GGCTA-TGCCATTGTTTA-AAGATTTGGTAGCAAAACAGGAAA-AAAACATATTGGGCCAAAAATTCATTTGGATT-----------------------TAC-ATCAACAAGAAG--ATATTTTGAAAATG-A-G-CGATT-A---TTCATGGGAATGT-TAAATGAA---GTGACACA--AAAT-GCAGAG-CAAGAGAA--AAAAGT-GAAAA-GTACCA-----GGGACTGG---AA-TAC-------CACTAGTGAAATTAAAATC-AAATCTGGCAATGTTTC-TTTGGAGTTC--AA--GTTTTGAAGATACG--TAAATTAAATGTTGCA-TTT--CA---TG--TATTTGTTGTTTTCC------CCCTTGGGTACA-TTCCAA-TCTTTA-CCTG-GCA-CCGTCC-AT--TCT--NTTTGT-TGT-AAACTGT-CCAT------------------T-CTG-----ATTGA-----AAAAAAAAAACTG-T-CCA-T-TC---TT----TAA----AAGAATG-----GACAGTTC-T------TCAAAAAGAATG-GAC-AGTT--TTTTC---A-----AGAA-AGACACTT-ACAGGTAA-CTTAATGGA-----T-GT-----GAGTTAGCAACGACAATA--ACCTATAGAATGG-ACAATT-CAAACAAAAGGNTTACGTCAC-AATCATG
gi|1 : A-GTTCTTTTTCCTCC-CA---CAG---A-GT-GAGACAGTTTTTC---GGCCTTTCT--CC-------T
gi|1 : gtaa-TAT-AAACTGT-CCACG-----------------T-CTG------TTGA-----AGAGAAAGAACT-----CA-TCTC---GT----GGA----CATACCGCCCTCGACAGTTC-TTTTTCCTCCCACAGAGTGAGAC-AGTT--TTTgtcgagggcggtatgtccacgagatgagttctttctcttcaacagacgtggacagtttatacaggcctttctgccctattctaaggagcaatgattttccccttttggtaggatgggattttcagataatggattgtatttgaattcagatagaattgttcaggtcgtcatacatgcaaaagtaaaaatattgtttacagaagaataagaacagtccacataaaagttaaggcgtgtaaattgctggcattttgttaatggctattgtttttataaggatctcacgtggatggctcacacatctacaaagcagcgaagaaacgttacaaggtggcgctttgtttcagactattatacagagtaaggtgtgatgtttttgaatcagttgctaaagttcgaactccttgtaagataagcaagtcttcctcttatggagaaaagcgtactaagtattataactggtcaaaatttaaagaaacctgaatatgcgcaaaatactgatgtgttatataagtgcactttggatctaagaaatggaaaatagtgaaacacaaaataaggacaaattttttacgtagaaagatgggttcattttcgacattttttgaatgaggtactttacatgtacgaatgcctagtcaggatattgaaaaattaattgagcatttttaaaaagccaattgaatcaagagaattaagcaagttactgagaaaggactaaccaaaagaaaacaggaaaggcaaaggtgactatgccattgtttaaagttggtagaaaacaggataaaacatattgggccaaaattcatttggattttttttttttttttttttttttttaccatcacaagatattttgaaaatgaggcgattattcatgggaatgttaaatgaagtgacacaaaatgcagaacaagaggaaaaagtggaaaagtaacgcagctgggactgaaatacatgtatgcactagtgaaattaaaattcaatctggcaatgtttcttttggagttcagttttgaagatacgtttaaattaaatgttgcatttcccatgtatttgttgttttcctccttgggtacattccaattttttacctggcatgtccattgtcttgttttgttttgtcctgtcattctgattgaaaaaaaaacctgttccattcttaaaagaatggaaagttctttcaaaaagaatggacagtttctcttcagaagaatagtcacttacaggtaaattaatgggcagtttgtgagttagcaaccaatacctatagaatggacaattcaaaccaaagggttacgtcacaaatcatgtttttaaatgtacgctatgaagaatgtgt
gi|1 : gtaaaggagaaaggccgCGAGGGCGGTATGTCCACGAGATGA-GTTCTTT---CTCTTCA--ACAG---ACGT-G-GACAGTTTA-TACAGGCCTTTCTGCCC-------TATTCTAAGGA--GCAAT-GATTTTC-CCCTTTT-GGTAGGATGGGATTT-TCAGATA-ATGGATTGTATTTGAATTCAGATAGAATTGTTCAGGTCGTCATACAT-GCAAAA---GTA----AAAA-TATTGTTTACAG-AAGAATAAGAACAGTCCACATAAAAGTTAAGGCGTGTAAATTGCTGGCATTTTGTT-AAT-GGCTATTGTTTTTA-----------TAAGGATCTCACGTGGATGGCTCACACATCTACAA-AGCAGCGAAGAAACGTT-ACAAGGTGGCGC-TTTG-----TTTCAGAC-T-AT-TA---TACAGAGTAAGGTGTGATGTTTTTGAA-TCA-GTTGCTAAAGTTCGAACTCCTTGTAA-GATAAGC-AAGTCTTCCTCTTATGGAGAAAAGCGTACTAAGTAT--TATAAC-T-GGTC-AAAATTT-AAAGAAACCTGAATATGCGCAAAA-TACTGATGTGTTAT-A--TA-AGT--GCACTTTGGATCTAAGAAATGGAAAATAGTGAAACACAAAAT-AAGGACAAATTTTTTAC-GTAGAAA-GATGGGTTCATTTT-C-G-ACA-TTTTTTGAATGAGGTACTTTACATGTACGAATGCCTAGTCAGGATATTGAAAAATTAATT-GAGC---A--TTTTTAAAAAGCCAATTGAATCAA-GAG-AATTAAGCAAGTTACTG--A-GAAAGGACTAACCAAAAGAAAA-C-AGGAAAGGCAAAG-G-T-GACTA-TGCCATTGTTTA-AAG--TTGGTAG-AAAACAGG-AT-AAAACATATTGGGCC-AAAATTCATTTGGATTTTTTTTTTTTTTTTTTTTTTTTTTACCATC-ACA---AG--ATATTTTGAAAATG-AGG-CGATT-A---TTCATGGGAATGT-TAAATGAA---GTGACACA--AAAT-GCAGAA-CAAGAGGA--AAAAGTGGAAAA-GTAACGCAGCTGGGACTGA---AA-TACATGTATGCACTAGTGAAATTAAAATT-CAATCTGGCAATGTTTCTTTTGGAGTTC---A--GTTTTGAAGATACGTTTAAATTAAATGTTGCA-TTTCCCA---TG--TATTTGTTGTTTTCC------TCCTTGGGTACA-TTCCAATTTTTTA-CCTG-GCA--TGTCC-ATTGTCTTGTTTTGT-TTT-GTCCTGT--CAT------------------T-CTG-----ATTG------AAAAAAAAACCTGTT-CCA-T-TC----T----TAA----AAGAATG-----GAAAGTTCTT------TCAAAAAGAATG-GAC-AGTTTCTCTTCAG-A-----AGAATAGTCACTT-ACAGGTAA-ATTAATGGGCAGTTT-GT-----GAGTTAGCAAC--CAAT---ACCTATAGAATGG-ACAATT-CAAACCAAAGGGTTACGTCACAAATCATGcaggcctttctgccctattctaaggagcaatgattttccccttttggtaggatgggattttcagataatggattgtatttgaattcagatagaattgttcaggtcgtcatacatgcaaaagtaaaaatattgtttacagaagaataagaacagtccacataaaagttaaggcgtgtaaattgctggcattttgttaatggctattgtttttataaggatctcacgtggatggctcacacatctacaaagcagcgaagaaacgttacaaggtggcgctttgtttcagactattatacagagtaaggtgtgatgtttttgaatcagttgctaaagttcgaactccttgtaagataagcaagtcttcctcttatggagaaaagcgtactaagtattataactggtcaaaatttaaagaaacctgaatatgcgcaaaatactgatgtgttatataagtgcactttggatctaagaaatggaaaatagtgaaacacaaaataaggacaaattttttacgtagaaagatgggttcattttcgacattttttgaatgaggtactttacatgtacgaatgcctagtcaggatattgaaaaattaattgagcatttttaaaaagccaattgaatcaagagaattaagcaagttactgagaaaggactaaccaaaagaaaacaggaaaggcaaaggtgactatgccattgtttaaagttggtagaaaacaggataaaacatattgggccaaaattcatttggattttttttttttttttttttttttttaccatcacaagatattttgaaaatgaggcgattattcatgggaatgttaaatgaagtgacacaaaatgcagaacaagaggaaaaagtggaaaagtaacgcagctgggactgaaatacatgtatgcactagtgaaattaaaattcaatctggcaatgtttcttttggagttcagttttgaagatacgtttaaattaaatgttgcatttcccatgtatttgttgttttcctccttgggtacattccaattttttacctggcatgtccattgtcttgttttgttttgtcctgtcattctgattgaaaaaaaaacctgttccattcttaaaagaatggaaagttctttcaaaaagaatggacagtttctcttcagaagaatagtcacttacaggtaaattaatgggcagtttgtgagttagcaaccaatacctatagaatggacaattcaaaccaaagggttacgtcacaaatcatgtttttaaatgtacgctatgaagaatgtgt
gi|10 : gtaaaggagaaaggccgaaaaactgtctcactctgtgggaggaaaaagaactgtTTCTTT---CTCT-CA---CAG---A-TT-G-GACAGTTTT-C---TGCCTTTCT--CC-------Ttttttaaatgtacgctatgaagaatgtgt
gi|10 : aAAACTG-T-CCA-T-TC---TTTCTCTCA----CAGATTG-----GACAGTTT-T------tggacagtttgtgatctttctcctacttaaaacatgatttctcttttgaaataaagatgtattgtattcagaatgattttttttacaattagcatacat
gi|10 : aaggagaaaggcagAGAA-AG---A-AT-G-GACAGTTTG-T---GATCTTTCT--CC-------TACT-TAA--A--ACA-T-GATTT---CTCTTTT-G-----------------AAATA-A-AGAT-GTATT-GTATTCAGAATG-ATTTTT-------TT-----T-ACAATgtgatctttctcctacttaaaacatgatttctcttttgaaataaagatgtattgtattcagaatgattttttttacaattagcatacat
gi|11 : aaggagaaaggcagaaaactgtccaatctgtgagA--ACCTATAGAATGG-ACAATT-CAAACAAAAGAACTACGTCAC-AGTCATGtagcatacat
gi|11 : A-GTTCTTT---CTC------ACAG---A-AT-G-GACAGTTTG-A---GACTTTTatttaaaagtctcaaactgtccattctgtgagaaagaactactgccgtcgattagtcctt
gi|12 : aacctatagaatggacaattcaaacaaaagaactacgtcacagtcatgatttGAA-AG---A-AT-G-GACAGTT-G-T---GATCTTTCT--CC-------TACTCTAA--AGAACA-T-GATTTTC--TCTTTT-G-----------------AAATATA-AGAT-GTATT-GTATTAAAGAGGTTTTTTT-------TT-----T-ACAATA---GCA----actgccgtcgattagtcctt
gi|13 : ATCA-GTTCTTT---CTCT----GACAT---A-AT-A-GACAGTTTT-C---GGCTTCTAT--CT-------TA
gi|14 : gtaattCCTTGGGTACA-TTCCAA-TCTTTA-CCTG-ACA-CCGTCT-AT--GCT--CTTTGgggggttgagaccagttgtttctttcacagaatg
gi|15 : -AGACACTT-ACAGGTAA-CTTAATG------------------CTTAGC-ACGACAATA--ACCTATA
gi|16 : -TGCCATTGTTTA-AAG-TTTGGTAGCAAAACAGAAAA-AAAA
gi|2 : CGAGGTCTGTAGGCT---GAGATGACGTTCTTT----TCT-CAGAACAG---A-ATTG-GACAATT-A-A---AGCCTTTCT--CC-------TACT-TAA--A---CA-T-TATTTTC-TTTTTTTTGG---GATGGA---T-TCAAATA-A-AGAT-GTATT-GTATTCAGAATGAATTGTT-------TC-----T-GCAATA---GTA----AAATTCTTTGTGCACAG-AA---TAG--ACAGTC-ACAGGTAAGTTAAGG-GTGC----T-CTGGCATTTTGTTTA-T-G-CTATTGTTCT-ATAAAAAAAAAAGAA-GAT------------GCT-ACAC-T-TACAA-A---GCATGGAAGC-TT-ACA-GGTGG-GC-TT-G-----T--CAATTAT-ATATA---TACA-AGT---GTGTGATGTTTCTGA--TCAAGTTG--AAAGTTCG---CCTTTGTAAAGATAAGCCATGTAATC-TCTTATGTA-AAAA-CGT-TT--TT-T--T-CAAC-TTGGTCGAAAATTT-AAAGAA---------TGCGCAAAAATACTAATG-GT-AT-ACTTAAAGTTGACACTTTGGATCTAG-AAATGGAAAAT-AGGAAACACAAAATCAAGGA-AAATTTTTTAC-GTG--AA-GTTGTGTTCATTTTTC-G-ACATTTTTTTGAATGAGGAACTT-------ACGAATGC-TAGTCAGGATATTG-AAAAT--ATT-GAGC---ACTTTTTTATA---CCA-TTGAATCAG-AGG-AATTAAACAAGTT--TGAAAGAAAAGGACTAAC--AAGAAAAA-CAAGGAAAGGCAACA-GTT-GGCTA-TGTCATTGTTTA-AAGATTTGGTAGCAAAACAGAAAA-AAAACATATTGGGGAAAAAATTTATTTGGATT-----------------------T-C-ATCAACAAG-AG--ATATTTCGCAAATGAA-G-CGATTAA---TTCATGGAAATGT-TAGATGAA---GTGACACA--AAAT-GCAGAG-CAAGAGAA--GAAAGT-TAAAA-GTA-CA-----GGGACTGG---AA-TAC-------CAC-AGTG-AATTAAAATC-AAATCTGGCAATTTTCT-TTTGGAGTTC--AATTTTTTTGAAGATATG--TAAATTAAATGTTGCA-TTT--CA---TG--TATTTGTT-TTTCCC------CCCTTGGGTACA-TTCCAA-T-TTTA-CCTG-ACA-CCGTCTAAT--GCT--CTTTGT-TGTAAAACTGT-TCAT------------------TCCTG-----ATTGA-----AAAAAAAAAACTC-T-CCA-T-TC---TT----TAA----AAGCATG-----AACAGTTC-T------TCATAAAGAATG-GACAAGTT--TTTTCAAGA-----AGAA-AGACACTTAACAGGTAA-TTTAATGAAGTT--T-GT-----GAGTTAGCAACGACAATA--ACCTATAGAATGGAACAATT-CAAA-AAAATATTTACGTCAC-AATCATGa
gi|3 : AAGAAATG-GAC-AGTT--TTTTT---ACAGTAAGAATAGACACTT-ACAGGTAAGCTTAAC--------T-GC--------TTAGGCACGAC-ATA--ACCTATAAGATG
gi|3 : tgT-TACAGTA--AGAATAGACAC-TT-ACA-GGTAA-GC-TT-AACTGCT--TAGGCACGACATAACCTATA-AG----ATGTGATGTTTCTGAAATCATGTTG--AAAGTTCG---CCTTTGTAA-GATAAGC-ATGTCTTCCTCTTATGGAGAAAA-------AATT-TTCT-TAACTTTGGTT-CAAATTTCAAAGAAA--TGAATATGCGCAAAAATACTGA-G-G-TATAACTTAGTGT--ACACTTT-GATCTAC-GAATGGAAAATGATGAACCACAAAAT-AAGGA-AAATCTTTTACAGTG--AACGATGGGTTTA--TT-CGG-ACA--CTTTTGACTGAGGAAACT-------ACGAAT-C-TAGTCAGGATATTGAAAAAT--ATTAAAGCAAAACTTTTTAAAA---ACA-TTGAATCACTGAG-AATTAAACAAGTTACTG--AG--AAAGACTAAC--AAAAAAAATCAAGGAAAGACTAAG-GTTGGGCTAGTGCCATTGTTTATAAGTTTGGGTAGCAAAGCAGGAAATAAAACA-AATGGGCACAAAATTCCTTTGGATT-----------------------TAC-ATC-ACAAGAAGTTATATTTT-AAAATG-A-GCCGATT-ATAGTTCATGGGAATGTGTAAGTGAAAATGTGACAAC--AAATGGCAGAGACAAAAGAA--AAAGAT-GAAAAGGTACCA-----GGGGCTGAGTCAA-TAC-------CACTAG-GAAA-TAAAATCAAAATCTGGCAATG-TTC-TTTGGAATTTCAAA--GTTTTGAAGATATG--T--ATTAAATGTTGCATTTT--CAGTCTG--TA-TTGTTGTTTTCC------CTCTTGGGTACATTTCCAA-T-TTTA-CCT--TCC-TTGTCC-AT--TCTG-TTTTGT-TGT-AAACTGTCCCAT------------------T-CTG-----ATTG--------AAAAAAACCTG-TCCCA-T-TC----T----TAA----AAGAAT------GACCGTTC-T------TCAAGAAGAATA-GAC-A------------------------------TT-ACAGGTAA-CTTAA---A-----T-G--------GTTAGCAACAACAATAACACCTATAGAAT-G-ACAATT-CAAtgatgtttctgaaatcatgttgaaagttcgcctttgtaagataagcatgtcttcctcttatggagaaaaaattttcttaactttggttcaaatttcaaagaaatgaatatgcgcaaaaatactgaggtataacttagtgtacactttgatctacgaatggaaaatgatgaaccacaaaataaggaaaatcttttacagtgaacgatgggtttattcggacacttttgactgaggaaactacgaatctagtcaggatattgaaaaatattaaagcaaaactttttaaaaacattgaatcactgagaattaaacaagttactgagaaagactaacaaaaaaaatcaaggaaagactaaggttgggctagtgccattgtttataagtttgggtagcaaagcaggaaataaaacaaatgggcacaaaattcctttggatttacatcacaagaagttatattttaaaatgagccgattatagttcatgggaatgtgtaagtgaaaatgtgacaacaaatggcagagacaaaagaaaaagatgaaaaggtaccaggggctgagtcaataccactaggaaataaaatcaaaatctggcaatgttctttggaatttcaaagttttgaagatatgtattaaatgttgcattttcagtctgtattgttgttttccctcttgggtacatttccaattttaccttccttgtccattctgttttgttgtaaactgtcccattctgattgaaaaaaacctgtcccattcttaaaagaatgaccgttcttcaagaagaatagacattacaggtaacttaaatggttagcaacaacaataacacctatagaatgacaattcaaca
gi|4 : tgaagaaatggacagtttttACACAGAAT-AAAGA-AAACTT---AC-CTG--AA-GATGGTTTCATTTT-C-GGACA-TTTCT--GATGAGGAACTT-------ATGAATGC-TAGTCAGGATATTGAAAA-T--ATT-GAGC---GCTTTCTTAAA---CCA-TTGAATCAA-GAGGAATTAAACAAGTTACTG--AAGAAA----T--------------CGAGGAATGACAAGG--TG-GGCTA-TGCCATTGTTTT-GAAATT----AGCAAAACAGGAAA-TAAA--TATTGGACCATAA-TTCATTTGGATT-----------------------TAC-ATCA-CAAGAAG--ATATTTTGAAAATA-A------TT-A---TTCATGGGAACGT-TAAATGAA---GTGACACA--AAAT-GCAGAG-GAGGAGAACGAAAAAT-GAAA--GAAACA-----GGGACTGG---AAATAC-------TACTAGTGAAATTAAAATC-AAATCTGGCAATGTTTT-TTAGGAGTTC--AA--GTTTTGAAGATATG--TAAATTAAATGTTGCA-TTT--CA---TGTATATTTGTTG-TTTAC------CCCTTGGGTACA-TTCCAA-ACTTTA-CCTG-GCA-CTGTCC-AT--TCT--GTTTGTGTGT--AACTAT-CCAT------------------T-CTGTTT--GTTG-------------TAACTG-T-CCA-T-TTTGATT----TAA----AAAA-----------AATT--------------AAGAATG-GAT-AAT----------------------AGACACTT-ACAGGTAA-CTTAATGGA-----C---------AGTTAGC-ACAACAATA--ACCTATAGAATGG-ACAATT-CAAACAAAca
gi|5 : TCAGGATATTGAAAA-T--ATT-AAGC---ACTTTTTTAAA---CCA-TTGAATCAA-GAG-AATTAAACAAGTTACTG--AAGAAAGGACTAAC--AAAAAAAAACAAGGAAAGACAAGGAG---GGCTA-TGCCAATGTATA-AAGATT-GGAAGCAAAGCAGGAAA-AAA-CAAATTGGGCCAAAA-TTACTTTGGAAT-----------------------TAC-ATCA-CAAGAAG--ATATTTTGAAAATG-A-G-CGATT-A---TTCATGGGAATGT-TAAATGAA---GTGACACA--AAAT-GCAGAG-CAAAAGAA--AAAGAT-GAAAA-GTACCA-----GGGGCTGGC--AA-TAC-------CACTAGTGAAATTAAAATC-AAATCTGGCAATGTTTC-TTTGGATTTC--AA--GTTTTGAAGATATG--TAAATTAAATGTTGCA-TTT--CA---TG--TATTTGTTGTTTTCC------CTCTTGGGTACA-TTCCAA-TCTTTAGCCTGTTCATTTTTCC-AT--TCT--GTTGTT-TGT--AACTGT-CCAT------------------T-CTG-----ATTG---------AAAAAACCTG-T-CCA-T-TC----T----TAA----AAGAATG-----CACATTCT-T------TCAAGAAGAAT-------------------------------AGACACTT-ACA-GTAA-CTTAAT--------T----------GTTAGCAA--ACAATA--ACCTATA-AATGG-ACAATTCCAAACAAt
gi|6 : AAAACAGGAAG-AA-------TG---------TTCATT-AGATT-----------------------TTC-ACCA-TAAGAAG--GCATTT-AAAAATG-A-A-TGATT-A---TTTATAGGAATAT-GAAATGTA---GAGACACACAAAAT-ACAGAG-GAAGAGAA--ACGAGT-GAAG--GTACCA-----GGGACTGG---AAACAT-------CACTAATGGAACCAAAATC-AAATCTGGCGATGTGTC-CTTCGAGTTC--AA--GTTTTGAAGATACG--TAAACTAAATG----------------------TTTGTTGCCCCCCCCCCCTCCCTTGGGTACA-CTGCAA-TCTTTA-CATG-GCA-CTTTCTAAT--TCT--ATTTGT-TGT--AATTGT-CCATCATACATGTACCCCCACCT-CAGAGAATATTGAGAGAGAAAAAAACAACTG-T-CCA-T-TC---TT-----------AATAATG-----GACAGTTC-T------TAAAAAAGAATA-GAC-ACTT--tta
gi|7 : GCCC--TCGATCA-GTTCTTT---CTCT-CA---CAG---A-AT-G-GACAGTTTT-C---GGCCTTTCT--CC-------a
gi|7 : -AAACTGT-CCAT------------------T-CTG-------TG------AGAGAAAGAACTGAT-CGAGG-GC---GG----TAGGCCCGAG-ATG--------AGTTC-TTTC---TCAGACAGAATG-GAC-AATT--Tggtaggcccgagatgagttctttctcagacagaatggacaatttaaagcctttctcctacttaaaacattattttccttttttgggatggattcaaataaagatgtattgtattcagaatgaattgtttctgcaatagtaaaatctttgtgcacagaatagacagtcacaggtaagttaagggtgctctgcattttgtttaatggctattgttctagaagatgctacacattacaaaagcatggaagcttacaggtgggctttgtcttatatatatacaagtgtgtgatgtttctgaatcagttgaaagttcgccattgtaagataagcatgt
gi|7 : ggagaaaggccgaCGAGGGCGGTAGGCCC--GAGATGA-GTTCTTT---CTC---AGA-CAG---A-AT-G-GACAATTTA-A---AGCCTTTCT--CC-------TACT-TAA--A--ACA-T-TATTTTC-CTTTTTT-GG---GATGGA---T-TCAAATA-A-AGAT-GTATT-GTATTCAGAATGAATTGTT-------TC-----T-GCAATA---GTA----AAAT-CTTTGTGCACAG-AA---TAG--ACAGTC-ACAGGTAAGTTAAGG-GTGC----T-CT-GCATTTTGTTTAATGG-CTATTGTTCT-A-----------GAA-GAT------------GCT-ACACAT-TACAA-A--AGCATGGAAGC-TT-ACA-GGTGG-GCTTT-G-----T--C--TTAT-ATATA---TACA-AGT---GTGTGATGTTTCTGAA-TCA-GTTG--AAAGTTCG---CCATTGTAA-GATAAGC-ATGTaaagcctttctcctacttaaaacattattttccttttttgggatggattcaaataaagatgtattgtattcagaatgaattgtttctgcaatagtaaaatctttgtgcacagaatagacagtcacaggtaagttaagggtgctctgcattttgtttaatggctattgttctagaagatgctacacattacaaaagcatggaagcttacaggtgggctttgtcttatatatatacaagtgtgtgatgtttctgaatcagttgaaagttcgccattgtaagataagcatgt
gi|8 : ggagaaaggccgaaaactgtccattctgtgagagaaagaactgat---CCCT-C-GATCAGTTCA-AT-G-GACAGTTTT-C---GGCCTTTCT--CC-------T
gi|8 : atgtaaCGAGGGCCGTAGGCCC--GAGATGA-GTTCTTT---TTCT-T---ACAG---A-AT-G-GACAGTTTA-A---GGCCTTTCT--CCTACATTGTACT-TAA--A--ACA-TAAATTTTCATTATTGT-GG---GA-AGA---TGTCAAACA-A-AGAT-GGATT-GTA-TCAGAATTAATTGTT-------CCAGGG-TAGCAATACATGCATAGTAAAT-TATTGTTTACAGTAA---TAG--ACAGTC-ATAGGTAAGTTAGGG-GTGC----T-CCCGCATTTGGTTTAAT-G-GTATTGTCTT-A-----------GAACTAT-------------CT-ACACAT-TACAA-A--AGCATGGAAAC-TTAACA-GGTGG-GC-TT-ccgtaggcccgagatgagttctttttcttacagaatggacagtttaaggcctttctcctacattgtacttaaaacataaattttcattattgtgggaagatgtcaaacaaagatggattgtatcagaattaattgttccagggtagcaatacatgcatagtaaattattgtttacagtaatagacagtcataggtaagttaggggtgctcccgcatttggtttaatggtattgtcttagaactatctacacattacaaaagcatggaaacttaacaggtgggcttttgtc
gi|9 : atgtaaaggagaaaggccgaaaactgtccattgaactgatTTAATGGA-----CAGTTTATGGAGTTACCA-CAACAATA--ACCTATAGAATGG-ACAATT-CAAACAAAAGGTTTACGTCAC-AATCATGttgtc
Alignments
lowQualScore : 11 3333333 111111 1111111 1 111111 11 444444444444444 44444444444444 111 1111 1 1 111 11 1 1 222222 1 1 8888888888888888888888888888 11 1 111 333333333333333333 111 1 2222 11 2 11 111 1 1 55555555555555555 1 1 1 222 1111 1 1 11 11 1 1 1 1 11 1 1 1 1 11 3333333 1 1111 111 111 11111 11 1 22222 1 1 1111 1 66666666666666666666666 22 111 111 111 11 11111 111 1 2222222 111 111111 1 111 11 5555555555555555555555555555555555555555 2222222222222222 111111 222222 888888888888888888888888 7777777777777777777 1
lowQualScore : 1 11 5 777 2222222 555 3 3 3 222222 55 1111111 3 111111 6 77 00 6 111111111111111 6 6 6 6 3 11111111111111 6 444 7777 0 1 1 0 777 33 0 0 222222 8 3 3 0 0 5555555555555555555555555555 22 0 3 8 8 111 8 8 8 8 8 666666666666666666 3 777 0 0000 33 0 33 777 1 0 0 6 6 66666666666666666 3 7 3 3 555 7 7 8888 3 6 2 88 6 44 2 0 0 3 0 33 0 3 0 0 0 33 3 2222222 2 0 0 2222 8 444 444 8 8 8 0 11111 3 0 11 6 3 1 77777 6 6 1 1 5 0000 99 1 11111111111111111111111 3 6 22 3 99 22 6 444 6 111 6 111 99 6 6 99 6 44 6 66666 888 3 1111111 1 1 6 6 99 99 0 99 6 99 111 99 1 999999 5 777 5 77 888 1 77 444 5 66 5 1111111111111111111111111111111111111111 8 4 4 4 5555555555555555 2 444444 4 000000 2 4 4 555555555555555555555555 5 5 7777777777777777777 6 5 66 5 5 1 0
lowQualScore : . .. . ... ....... ... . . . ...... .. ....... . ...... . .. .. . ............... . . . . . .............. . ... .... . . . . ... .. . . ...... . . . . . ............................ .. . . . . ... . . . . . .................. . ... . .... .. . .. ... . . . . . ................. . . . . ... . . .... . . . .. . .. . . . . . .. . . . . . .. . ....... . . . .... . ... ... . . . . ..... . . .. . . . ..... . . . . . .... .. . ....................... . . .. . .. .. . ... . ... . ... .. . . .. . .. . ..... ... . ....... . . . . .. .. . .. . .. ... .. . ...... . ... . .. ... . .. ... . .. . ........................................ . . . . ................ . ...... . ...... . . . ........................ . . ................... . . .. . . . .
lowQualScore : 0 00 0 000 6666666 888 3 3 3 555555 00 8888888 3 000000 7 77 33 7 000000000000000 7 7 7 7 5 33333333333333 7 000 0000 0 0 0 0 555 88 0 0 222222 8 2 2 0 0 5555555555555555555555555555 55 0 2 0 0 888 0 0 0 0 0 222222222222222222 2 555 0 8888 22 0 88 555 2 0 0 7 7 77777777777777777 3 3 3 3 777 3 3 0000 3 7 0 33 7 33 0 0 0 2 0 88 0 2 0 0 0 22 2 5555555 5 0 8 6666 0 000 000 0 0 0 8 66666 2 8 00 0 8 4 22222 7 7 7 3 7 4444 77 3 77777777777777777777777 5 7 88 2 22 77 7 333 7 777 7 777 22 7 7 22 7 00 7 77777 333 3 7777777 7 7 7 7 22 22 7 22 7 22 777 22 7 222222 7 000 7 44 999 4 99 666 7 22 0 4444444444444444444444444444444444444444 9 4 4 4 4444444444444444 0 000000 4 666666 1 4 4 222222222222222222222222 7 7 0000000000000000000 2 4 11 7 7 0 0
consensus : CGAGGGCNGTAGGCCC--GAGATGA-GTTCTTT---CTCT-CAGAACAG---A-AT-G-GACAGTTTN-C---GGCCTTTCT--CC-------TACT-TAA--A--ACA-T-GATTTTC-CTCTTTT-GG---GATGGA---T-TCAAATA-A-AGAT-GTATT-GTATTCAGAATGAATTGTT-------TC-----T-GCAATA---GTA----AAAT-CNTTGTNCACAG-AA---TAG--ACAGTC-ACAGGTAAGTTAAGG-GTGC----T-CTGGCATTTTGTTTAAT-G-CTATTGTTCT----A-----------GAAC--------GATG-CT-ACACAT-TACAA-A--AGCATGGAAAC-TT-ACA-GGTGG-GC-TT-G-----T--CAGNCAT-ATATA---TACA-AGT---GTGTGATGTTTCTGAA-TCA-GTTG--AAAGTTCG---CCTTTGTAA-GATAAGC-ATGTCTTCCTCTTATGGAGAAAA-CGT-CTAATT-T--T-TAAC-TTGGTC-AAAATTT-AAAGAAA--TGAATATGCGCAAAAATACTGATG-GTTAT-ACTTAGAGT--ACACTTTGGATCTAN-AAATGGAAAATGATGAAACACAAAAT-AAGGA-AAATTTTTTAC-GTG--AA-GATGGGTTCATTTT-C-G-ACA-TTTTTTGAATGAGGAACTT-------ACGAATGC-TAGTCAGGATATTGAAAAAT--ATT-GAGC---ACTTTTTTAAA---CCA-TTGAATCAA-GAG-AATTAAACAAGTTACTG--AGGAAAGGACTAAC--AAAAAAAA-CAAGGAAAGACAAGG-GTT-GGCTA-TGCCATTGTTTA-AAGATTTGGTAGCAAAACAGGAAA-AAAACATATTGGGCCAAAAATTCATTTGGATT-----------------------TAC-ATCAACAAGAAG--ATATTTTGAAAATG-A-G-CGATT-A---TTCATGGGAATGT-TAAATGAA---GTGACACA--AAAT-GCAGAG-CAAGAGAA--AAAAGT-GAAAA-GTACCA-----GGGACTGG---AA-TAC-------CACTAGTGAAATTAAAATC-AAATCTGGCAATGTTTC-TTTGGAGTTC--AA--GTTTTGAAGATACG--TAAATTAAATGTTGCA-TTT--CA---TG--TATTTGTTGTTTTCC------CCCTTGGGTACA-TTCCAA-TCTTTA-CCTG-GCA-CCGTCC-AT--TCT--NTTTGT-TGT-AAACTGT-CCAT------------------T-CTG-----ATTGA-----AAAAAAAAAACTG-T-CCA-T-TC---TT----TAA----AAGAATG-----GACAGTTC-T------TCAAAAAGAATG-GAC-AGTT--TTTTC---A-----AGAA-AGACACTT-ACAGGTAA-CTTAATGGA-----T-GT-----GAGTTAGCAACGACAATA--ACCTATAGAATGG-ACAATT-CAAACAAAAGGNTTACGTCAC-AATCATG
Reference ( family-6810 ) : CGAGGGCNGTAGGCCC--GAGATGA-GTTCTTT---CTCT-CAGAACAG---A-AT-G-GACAGTTTN-C---GGCCTTTCT--CC-------TACT-TAA--A--ACA-T-GATTTTC-CTCTTTT-GG---GATGGA---T-TCAAATA-A-AGAT-GTATT-GTATTCAGAATGAATTGTT-------TC-----T-GCAATA---GTA----AAAT-CNTTGTNCACAG-AA---TAG--ACAGTC-ACAGGTAAGTTAAGG-GTGC----T-CTGGCATTTTGTTTAAT-G-CTATTGTTCT----A-----------GAA---------GATG-CT-ACACAT-TACAA-A--AGCATGGAAAC-TT-ACA-GGTGG-GC-TT-G-----T--CAGNCAT-ATATA---TACA-AGT---GTGTGATGTTTCTGAA-TCA-GTTG--AAAGTTCG---CCTTTGTAA-GATAAGC-ATGTCTTCCTCTTATGGAGAAAA-CGT-CTAATT-T--T-TAAC-TTGGTC-AAAATTT-AAAGAAA--TGAATATGCGCAAAAATACTGATG-GTTAT-ACTTAGAGT--ACACTTTGGATCTAN-AAATGGAAAATGATGAAACACAAAAT-AAGGA-AAATTTTTTAC-GTG--AA-GATGGGTTCATTTT-C-G-ACA-TTTTTTGAATGAGGAACTT-------ACGAATGC-TAGTCAGGATATTGAAAAAT--ATT-GAGC---ACTTTTTTAAA---CCA-TTGAATCAA-GAG-AATTAAACAAGTTACTG--AGGAAAGGACTAAC--AAAAAAAA-CAAGGAAAGACAAGG-GTT-GGCTA-TGCCATTGTTTA-AAGATTTGGTAGCAAAACAGGAAA-AAAACATATTGGGCCAAAAATTCATTTGGATT-----------------------TAC-ATCAACAAGAAG--ATATTTTGAAAATG-A-G-CGATT-A---TTCATGGGAATGT-TAAATGAA---GTGACACA--AAAT-GCAGAG-CAAGAGAA--AAAAGT-GAAAA-GTACCA-----GGGACTGG---AA-TAC-------CACTAGTGAAATTAAAATC-AAATCTGGCAATGTTTC-TTTGGAGTTC--AA--GTTTTGAAGATACG--TAAATTAAATGTTGCA-TTT--CA---TG--TATTTGTTGTTTTCC------CCCTTGGGTACA-TTCCAA-TCTTTA-CCTG-GCA-CCGTCC-AT--TCT--NTTTGT-TGT-AAACTGT-CCAT------------------T-CTG-----ATTGA-----AAAAAAAAAACTG-T-CCA-T-TC---TT----TAA----AAGAATG-----GACAGTTC-T------TCAAAAAGAATG-GAC-AGTT--TTTTC---A-----AGAA-AGACACTT-ACAGGTAA-CTTAATGGA-----T-GT-----GAGTTAGCAACGACAATA--ACCTATAGAATGG-ACAATT-CAAACAAAAGGNTTACGTCAC-AATCATG
gi|1 : A-GTTCTTTTTCCTCC-CA---CAG---A-GT-GAGACAGTTTTTC---GGCCTTTCT--CC-------T
gi|1 : gtaa-TAT-AAACTGT-CCACG-----------------T-CTG------TTGA-----AGAGAAAGAACT-----CA-TCTC---GT----GGA----CATACCGCCCTCGACAGTTC-TTTTTCCTCCCACAGAGTGAGAC-AGTT--TTTgtcgagggcggtatgtccacgagatgagttctttctcttcaacagacgtggacagtttatacaggcctttctgccctattctaaggagcaatgattttccccttttggtaggatgggattttcagataatggattgtatttgaattcagatagaattgttcaggtcgtcatacatgcaaaagtaaaaatattgtttacagaagaataagaacagtccacataaaagttaaggcgtgtaaattgctggcattttgttaatggctattgtttttataaggatctcacgtggatggctcacacatctacaaagcagcgaagaaacgttacaaggtggcgctttgtttcagactattatacagagtaaggtgtgatgtttttgaatcagttgctaaagttcgaactccttgtaagataagcaagtcttcctcttatggagaaaagcgtactaagtattataactggtcaaaatttaaagaaacctgaatatgcgcaaaatactgatgtgttatataagtgcactttggatctaagaaatggaaaatagtgaaacacaaaataaggacaaattttttacgtagaaagatgggttcattttcgacattttttgaatgaggtactttacatgtacgaatgcctagtcaggatattgaaaaattaattgagcatttttaaaaagccaattgaatcaagagaattaagcaagttactgagaaaggactaaccaaaagaaaacaggaaaggcaaaggtgactatgccattgtttaaagttggtagaaaacaggataaaacatattgggccaaaattcatttggattttttttttttttttttttttttttaccatcacaagatattttgaaaatgaggcgattattcatgggaatgttaaatgaagtgacacaaaatgcagaacaagaggaaaaagtggaaaagtaacgcagctgggactgaaatacatgtatgcactagtgaaattaaaattcaatctggcaatgtttcttttggagttcagttttgaagatacgtttaaattaaatgttgcatttcccatgtatttgttgttttcctccttgggtacattccaattttttacctggcatgtccattgtcttgttttgttttgtcctgtcattctgattgaaaaaaaaacctgttccattcttaaaagaatggaaagttctttcaaaaagaatggacagtttctcttcagaagaatagtcacttacaggtaaattaatgggcagtttgtgagttagcaaccaatacctatagaatggacaattcaaaccaaagggttacgtcacaaatcatgtttttaaatgtacgctatgaagaatgtgt
gi|1 : gtaaaggagaaaggccgCGAGGGCGGTATGTCCACGAGATGA-GTTCTTT---CTCTTCA--ACAG---ACGT-G-GACAGTTTA-TACAGGCCTTTCTGCCC-------TATTCTAAGGA--GCAAT-GATTTTC-CCCTTTT-GGTAGGATGGGATTT-TCAGATA-ATGGATTGTATTTGAATTCAGATAGAATTGTTCAGGTCGTCATACAT-GCAAAA---GTA----AAAA-TATTGTTTACAG-AAGAATAAGAACAGTCCACATAAAAGTTAAGGCGTGTAAATTGCTGGCATTTTGTT-AAT-GGCTATTGTTTTTATAA-----------GGATCTCACGTGGATGGCTCACACATCTACAA-AGCAGCGAAGAAACGTT-ACAAGGTGGCGC-TTTG-----TTTCAGAC-T-AT-TA---TACAGAGTAAGGTGTGATGTTTTTGAA-TCA-GTTGCTAAAGTTCGAACTCCTTGTAA-GATAAGC-AAGTCTTCCTCTTATGGAGAAAAGCGTACTAAGTAT--TATAAC-T-GGTC-AAAATTT-AAAGAAACCTGAATATGCGCAAAA-TACTGATGTGTTAT-A--TA-AGT--GCACTTTGGATCTAAGAAATGGAAAATAGTGAAACACAAAAT-AAGGACAAATTTTTTAC-GTAGAAA-GATGGGTTCATTTT-C-G-ACA-TTTTTTGAATGAGGTACTTTACATGTACGAATGCCTAGTCAGGATATTGAAAAATTAATT-GAGC---A--TTTTTAAAAAGCCAATTGAATCAA-GAG-AATTAAGCAAGTTACTG--A-GAAAGGACTAACCAAAAGAAAA-C-AGGAAAGGCAAAG-G-T-GACTA-TGCCATTGTTTA-AAG--TTGGTAG-AAAACAGG-AT-AAAACATATTGGGCC-AAAATTCATTTGGATTTTTTTTTTTTTTTTTTTTTTTTTTACCATC-ACA---AG--ATATTTTGAAAATG-AGG-CGATT-A---TTCATGGGAATGT-TAAATGAA---GTGACACA--AAAT-GCAGAA-CAAGAGGA--AAAAGTGGAAAA-GTAACGCAGCTGGGACTGA---AA-TACATGTATGCACTAGTGAAATTAAAATT-CAATCTGGCAATGTTTCTTTTGGAGTTC---A--GTTTTGAAGATACGTTTAAATTAAATGTTGCA-TTTCCCA---TG--TATTTGTTGTTTTCC------TCCTTGGGTACA-TTCCAATTTTTTA-CCTG-GCA--TGTCC-ATTGTCTTGTTTTGT-TTT-GTCCTGT--CAT------------------T-CTG-----ATTG------AAAAAAAAACCTGTT-CCA-T-TC----T----TAA----AAGAATG-----GAAAGTTCTT------TCAAAAAGAATG-GAC-AGTTTCTCTTCAG-A-----AGAATAGTCACTT-ACAGGTAA-ATTAATGGGCAGTTT-GT-----GAGTTAGCAAC--CAAT---ACCTATAGAATGG-ACAATT-CAAACCAAAGGGTTACGTCACAAATCATGcaggcctttctgccctattctaaggagcaatgattttccccttttggtaggatgggattttcagataatggattgtatttgaattcagatagaattgttcaggtcgtcatacatgcaaaagtaaaaatattgtttacagaagaataagaacagtccacataaaagttaaggcgtgtaaattgctggcattttgttaatggctattgtttttataaggatctcacgtggatggctcacacatctacaaagcagcgaagaaacgttacaaggtggcgctttgtttcagactattatacagagtaaggtgtgatgtttttgaatcagttgctaaagttcgaactccttgtaagataagcaagtcttcctcttatggagaaaagcgtactaagtattataactggtcaaaatttaaagaaacctgaatatgcgcaaaatactgatgtgttatataagtgcactttggatctaagaaatggaaaatagtgaaacacaaaataaggacaaattttttacgtagaaagatgggttcattttcgacattttttgaatgaggtactttacatgtacgaatgcctagtcaggatattgaaaaattaattgagcatttttaaaaagccaattgaatcaagagaattaagcaagttactgagaaaggactaaccaaaagaaaacaggaaaggcaaaggtgactatgccattgtttaaagttggtagaaaacaggataaaacatattgggccaaaattcatttggattttttttttttttttttttttttttaccatcacaagatattttgaaaatgaggcgattattcatgggaatgttaaatgaagtgacacaaaatgcagaacaagaggaaaaagtggaaaagtaacgcagctgggactgaaatacatgtatgcactagtgaaattaaaattcaatctggcaatgtttcttttggagttcagttttgaagatacgtttaaattaaatgttgcatttcccatgtatttgttgttttcctccttgggtacattccaattttttacctggcatgtccattgtcttgttttgttttgtcctgtcattctgattgaaaaaaaaacctgttccattcttaaaagaatggaaagttctttcaaaaagaatggacagtttctcttcagaagaatagtcacttacaggtaaattaatgggcagtttgtgagttagcaaccaatacctatagaatggacaattcaaaccaaagggttacgtcacaaatcatgtttttaaatgtacgctatgaagaatgtgt
gi|10 : gtaaaggagaaaggccgaaaaactgtctcactctgtgggaggaaaaagaactgtTTCTTT---CTCT-CA---CAG---A-TT-G-GACAGTTTT-C---TGCCTTTCT--CC-------Ttttttaaatgtacgctatgaagaatgtgt
gi|10 : aAAACTG-T-CCA-T-TC---TTTCTCTCA----CAGATTG-----GACAGTTT-T------tggacagtttgtgatctttctcctacttaaaacatgatttctcttttgaaataaagatgtattgtattcagaatgattttttttacaattagcatacat
gi|10 : aaggagaaaggcagAGAA-AG---A-AT-G-GACAGTTTG-T---GATCTTTCT--CC-------TACT-TAA--A--ACA-T-GATTT---CTCTTTT-G-----------------AAATA-A-AGAT-GTATT-GTATTCAGAATG-ATTTTT-------TT-----T-ACAATgtgatctttctcctacttaaaacatgatttctcttttgaaataaagatgtattgtattcagaatgattttttttacaattagcatacat
gi|11 : aaggagaaaggcagaaaactgtccaatctgtgagA--ACCTATAGAATGG-ACAATT-CAAACAAAAGAACTACGTCAC-AGTCATGtagcatacat
gi|11 : A-GTTCTTT---CTC------ACAG---A-AT-G-GACAGTTTG-A---GACTTTTatttaaaagtctcaaactgtccattctgtgagaaagaactactgccgtcgattagtcctt
gi|12 : aacctatagaatggacaattcaaacaaaagaactacgtcacagtcatgatttGAA-AG---A-AT-G-GACAGTT-G-T---GATCTTTCT--CC-------TACTCTAA--AGAACA-T-GATTTTC--TCTTTT-G-----------------AAATATA-AGAT-GTATT-GTATTAAAGAGGTTTTTTT-------TT-----T-ACAATA---GCA----actgccgtcgattagtcctt
gi|13 : ATCA-GTTCTTT---CTCT----GACAT---A-AT-A-GACAGTTTT-C---GGCTTCTAT--CT-------TA
gi|14 : gtaattCCTTGGGTACA-TTCCAA-TCTTTA-CCTG-ACA-CCGTCT-AT--GCT--CTTTGgggggttgagaccagttgtttctttcacagaatg
gi|15 : -AGACACTT-ACAGGTAA-CTTAATG------------------CTTAGC-ACGACAATA--ACCTATA
gi|16 : -TGCCATTGTTTA-AAG-TTTGGTAGCAAAACAGAAAA-AAAA
gi|2 : CGAGGTCTGTAGGCT---GAGATGACGTTCTTT----TCT-CAGAACAG---A-ATTG-GACAATT-A-A---AGCCTTTCT--CC-------TACT-TAA--A---CA-T-TATTTTC-TTTTTTTTGG---GATGGA---T-TCAAATA-A-AGAT-GTATT-GTATTCAGAATGAATTGTT-------TC-----T-GCAATA---GTA----AAATTCTTTGTGCACAG-AA---TAG--ACAGTC-ACAGGTAAGTTAAGG-GTGC----T-CTGGCATTTTGTTTA-T-G-CTATTGTTCT----ATAAAAAAAAAAGAA---------GATG-CT-ACAC-T-TACAA-A---GCATGGAAGC-TT-ACA-GGTGG-GC-TT-G-----T--CAATTAT-ATATA---TACA-AGT---GTGTGATGTTTCTGA--TCAAGTTG--AAAGTTCG---CCTTTGTAAAGATAAGCCATGTAATC-TCTTATGTA-AAAA-CGT-TT--TT-T--T-CAAC-TTGGTCGAAAATTT-AAAGAA---------TGCGCAAAAATACTAATG-GT-AT-ACTTAAAGTTGACACTTTGGATCTAG-AAATGGAAAAT-AGGAAACACAAAATCAAGGA-AAATTTTTTAC-GTG--AA-GTTGTGTTCATTTTTC-G-ACATTTTTTTGAATGAGGAACTT-------ACGAATGC-TAGTCAGGATATTG-AAAAT--ATT-GAGC---ACTTTTTTATA---CCA-TTGAATCAG-AGG-AATTAAACAAGTT--TGAAAGAAAAGGACTAAC--AAGAAAAA-CAAGGAAAGGCAACA-GTT-GGCTA-TGTCATTGTTTA-AAGATTTGGTAGCAAAACAGAAAA-AAAACATATTGGGGAAAAAATTTATTTGGATT-----------------------T-C-ATCAACAAG-AG--ATATTTCGCAAATGAA-G-CGATTAA---TTCATGGAAATGT-TAGATGAA---GTGACACA--AAAT-GCAGAG-CAAGAGAA--GAAAGT-TAAAA-GTA-CA-----GGGACTGG---AA-TAC-------CAC-AGTG-AATTAAAATC-AAATCTGGCAATTTTCT-TTTGGAGTTC--AATTTTTTTGAAGATATG--TAAATTAAATGTTGCA-TTT--CA---TG--TATTTGTT-TTTCCC------CCCTTGGGTACA-TTCCAA-T-TTTA-CCTG-ACA-CCGTCTAAT--GCT--CTTTGT-TGTAAAACTGT-TCAT------------------TCCTG-----ATTGA-----AAAAAAAAAACTC-T-CCA-T-TC---TT----TAA----AAGCATG-----AACAGTTC-T------TCATAAAGAATG-GACAAGTT--TTTTCAAGA-----AGAA-AGACACTTAACAGGTAA-TTTAATGAAGTT--T-GT-----GAGTTAGCAACGACAATA--ACCTATAGAATGGAACAATT-CAAA-AAAATATTTACGTCAC-AATCATGa
gi|3 : AAGAAATG-GAC-AGTT--TTTTT---ACAGTAAGAATAGACACTT-ACAGGTAAGCTTAAC--------T-GC--------TTAGGCACGAC-ATA--ACCTATAAGATG
gi|3 : tgT-TACAGTA--AGAATAGACAC-TT-ACA-GGTAA-GC-TT-AACTGCT--TAGGCACGACATAACCTATA-AG----ATGTGATGTTTCTGAAATCATGTTG--AAAGTTCG---CCTTTGTAA-GATAAGC-ATGTCTTCCTCTTATGGAGAAAA-------AATT-TTCT-TAACTTTGGTT-CAAATTTCAAAGAAA--TGAATATGCGCAAAAATACTGA-G-G-TATAACTTAGTGT--ACACTTT-GATCTAC-GAATGGAAAATGATGAACCACAAAAT-AAGGA-AAATCTTTTACAGTG--AACGATGGGTTTA--TT-CGG-ACA--CTTTTGACTGAGGAAACT-------ACGAAT-C-TAGTCAGGATATTGAAAAAT--ATTAAAGCAAAACTTTTTAAAA---ACA-TTGAATCACTGAG-AATTAAACAAGTTACTG--AG--AAAGACTAAC--AAAAAAAATCAAGGAAAGACTAAG-GTTGGGCTAGTGCCATTGTTTATAAGTTTGGGTAGCAAAGCAGGAAATAAAACA-AATGGGCACAAAATTCCTTTGGATT-----------------------TAC-ATC-ACAAGAAGTTATATTTT-AAAATG-A-GCCGATT-ATAGTTCATGGGAATGTGTAAGTGAAAATGTGACAAC--AAATGGCAGAGACAAAAGAA--AAAGAT-GAAAAGGTACCA-----GGGGCTGAGTCAA-TAC-------CACTAG-GAAA-TAAAATCAAAATCTGGCAATG-TTC-TTTGGAATTTCAAA--GTTTTGAAGATATG--T--ATTAAATGTTGCATTTT--CAGTCTG--TA-TTGTTGTTTTCC------CTCTTGGGTACATTTCCAA-T-TTTA-CCT--TCC-TTGTCC-AT--TCTG-TTTTGT-TGT-AAACTGTCCCAT------------------T-CTG-----ATTG--------AAAAAAACCTG-TCCCA-T-TC----T----TAA----AAGAAT------GACCGTTC-T------TCAAGAAGAATA-GAC-A------------------------------TT-ACAGGTAA-CTTAA---A-----T-G--------GTTAGCAACAACAATAACACCTATAGAAT-G-ACAATT-CAAtgatgtttctgaaatcatgttgaaagttcgcctttgtaagataagcatgtcttcctcttatggagaaaaaattttcttaactttggttcaaatttcaaagaaatgaatatgcgcaaaaatactgaggtataacttagtgtacactttgatctacgaatggaaaatgatgaaccacaaaataaggaaaatcttttacagtgaacgatgggtttattcggacacttttgactgaggaaactacgaatctagtcaggatattgaaaaatattaaagcaaaactttttaaaaacattgaatcactgagaattaaacaagttactgagaaagactaacaaaaaaaatcaaggaaagactaaggttgggctagtgccattgtttataagtttgggtagcaaagcaggaaataaaacaaatgggcacaaaattcctttggatttacatcacaagaagttatattttaaaatgagccgattatagttcatgggaatgtgtaagtgaaaatgtgacaacaaatggcagagacaaaagaaaaagatgaaaaggtaccaggggctgagtcaataccactaggaaataaaatcaaaatctggcaatgttctttggaatttcaaagttttgaagatatgtattaaatgttgcattttcagtctgtattgttgttttccctcttgggtacatttccaattttaccttccttgtccattctgttttgttgtaaactgtcccattctgattgaaaaaaacctgtcccattcttaaaagaatgaccgttcttcaagaagaatagacattacaggtaacttaaatggttagcaacaacaataacacctatagaatgacaattcaaca
gi|4 : tgaagaaatggacagtttttACACAGAAT-AAAGA-AAACTT---AC-CTG--AA-GATGGTTTCATTTT-C-GGACA-TTTCT--GATGAGGAACTT-------ATGAATGC-TAGTCAGGATATTGAAAA-T--ATT-GAGC---GCTTTCTTAAA---CCA-TTGAATCAA-GAGGAATTAAACAAGTTACTG--AAGAAA----T--------------CGAGGAATGACAAGG--TG-GGCTA-TGCCATTGTTTT-GAAATT----AGCAAAACAGGAAA-TAAA--TATTGGACCATAA-TTCATTTGGATT-----------------------TAC-ATCA-CAAGAAG--ATATTTTGAAAATA-A------TT-A---TTCATGGGAACGT-TAAATGAA---GTGACACA--AAAT-GCAGAG-GAGGAGAACGAAAAAT-GAAA--GAAACA-----GGGACTGG---AAATAC-------TACTAGTGAAATTAAAATC-AAATCTGGCAATGTTTT-TTAGGAGTTC--AA--GTTTTGAAGATATG--TAAATTAAATGTTGCA-TTT--CA---TGTATATTTGTTG-TTTAC------CCCTTGGGTACA-TTCCAA-ACTTTA-CCTG-GCA-CTGTCC-AT--TCT--GTTTGTGTGT--AACTAT-CCAT------------------T-CTGTTT--GTTG-------------TAACTG-T-CCA-T-TTTGATT----TAA----AAAA-----------AATT--------------AAGAATG-GAT-AAT----------------------AGACACTT-ACAGGTAA-CTTAATGGA-----C---------AGTTAGC-ACAACAATA--ACCTATAGAATGG-ACAATT-CAAACAAAca
gi|5 : TCAGGATATTGAAAA-T--ATT-AAGC---ACTTTTTTAAA---CCA-TTGAATCAA-GAG-AATTAAACAAGTTACTG--AAGAAAGGACTAAC--AAAAAAAAACAAGGAAAGACAAGGAG---GGCTA-TGCCAATGTATA-AAGATT-GGAAGCAAAGCAGGAAA-AAA-CAAATTGGGCCAAAA-TTACTTTGGAAT-----------------------TAC-ATCA-CAAGAAG--ATATTTTGAAAATG-A-G-CGATT-A---TTCATGGGAATGT-TAAATGAA---GTGACACA--AAAT-GCAGAG-CAAAAGAA--AAAGAT-GAAAA-GTACCA-----GGGGCTGGC--AA-TAC-------CACTAGTGAAATTAAAATC-AAATCTGGCAATGTTTC-TTTGGATTTC--AA--GTTTTGAAGATATG--TAAATTAAATGTTGCA-TTT--CA---TG--TATTTGTTGTTTTCC------CTCTTGGGTACA-TTCCAA-TCTTTAGCCTGTTCATTTTTCC-AT--TCT--GTTGTT-TGT--AACTGT-CCAT------------------T-CTG-----ATTG---------AAAAAACCTG-T-CCA-T-TC----T----TAA----AAGAATG-----CACATTCT-T------TCAAGAAGAAT-------------------------------AGACACTT-ACA-GTAA-CTTAAT--------T----------GTTAGCAA--ACAATA--ACCTATA-AATGG-ACAATTCCAAACAAt
gi|6 : AAAACAGGAAG-AA-------TG---------TTCATT-AGATT-----------------------TTC-ACCA-TAAGAAG--GCATTT-AAAAATG-A-A-TGATT-A---TTTATAGGAATAT-GAAATGTA---GAGACACACAAAAT-ACAGAG-GAAGAGAA--ACGAGT-GAAG--GTACCA-----GGGACTGG---AAACAT-------CACTAATGGAACCAAAATC-AAATCTGGCGATGTGTC-CTTCGAGTTC--AA--GTTTTGAAGATACG--TAAACTAAATG----------------------TTTGTTGCCCCCCCCCCCTCCCTTGGGTACA-CTGCAA-TCTTTA-CATG-GCA-CTTTCTAAT--TCT--ATTTGT-TGT--AATTGT-CCATCATACATGTACCCCCACCT-CAGAGAATATTGAGAGAGAAAAAAACAACTG-T-CCA-T-TC---TT-----------AATAATG-----GACAGTTC-T------TAAAAAAGAATA-GAC-ACTT--tta
gi|7 : GCCC--TCGATCA-GTTCTTT---CTCT-CA---CAG---A-AT-G-GACAGTTTT-C---GGCCTTTCT--CC-------a
gi|7 : -AAACTGT-CCAT------------------T-CTG-------TG------AGAGAAAGAACTGAT-CGAGG-GC---GG----TAGGCCCGAG-ATG--------AGTTC-TTTC---TCAGACAGAATG-GAC-AATT--Tggtaggcccgagatgagttctttctcagacagaatggacaatttaaagcctttctcctacttaaaacattattttccttttttgggatggattcaaataaagatgtattgtattcagaatgaattgtttctgcaatagtaaaatctttgtgcacagaatagacagtcacaggtaagttaagggtgctctgcattttgtttaatggctattgttctagaagatgctacacattacaaaagcatggaagcttacaggtgggctttgtcttatatatatacaagtgtgtgatgtttctgaatcagttgaaagttcgccattgtaagataagcatgt
gi|7 : ggagaaaggccgaCGAGGGCGGTAGGCCC--GAGATGA-GTTCTTT---CTC---AGA-CAG---A-AT-G-GACAATTTA-A---AGCCTTTCT--CC-------TACT-TAA--A--ACA-T-TATTTTC-CTTTTTT-GG---GATGGA---T-TCAAATA-A-AGAT-GTATT-GTATTCAGAATGAATTGTT-------TC-----T-GCAATA---GTA----AAAT-CTTTGTGCACAG-AA---TAG--ACAGTC-ACAGGTAAGTTAAGG-GTGC----T-CT-GCATTTTGTTTAATGG-CTATTGTTCT----A-----------GAA---------GATG-CT-ACACAT-TACAA-A--AGCATGGAAGC-TT-ACA-GGTGG-GCTTT-G-----T--C--TTAT-ATATA---TACA-AGT---GTGTGATGTTTCTGAA-TCA-GTTG--AAAGTTCG---CCATTGTAA-GATAAGC-ATGTaaagcctttctcctacttaaaacattattttccttttttgggatggattcaaataaagatgtattgtattcagaatgaattgtttctgcaatagtaaaatctttgtgcacagaatagacagtcacaggtaagttaagggtgctctgcattttgtttaatggctattgttctagaagatgctacacattacaaaagcatggaagcttacaggtgggctttgtcttatatatatacaagtgtgtgatgtttctgaatcagttgaaagttcgccattgtaagataagcatgt
gi|8 : ggagaaaggccgaaaactgtccattctgtgagagaaagaactgat---CCCT-C-GATCAGTTCA-AT-G-GACAGTTTT-C---GGCCTTTCT--CC-------T
gi|8 : atgtaaCGAGGGCCGTAGGCCC--GAGATGA-GTTCTTT---TTCT-T---ACAG---A-AT-G-GACAGTTTA-A---GGCCTTTCT--CCTACATTGTACT-TAA--A--ACA-TAAATTTTCATTATTGT-GG---GA-AGA---TGTCAAACA-A-AGAT-GGATT-GTA-TCAGAATTAATTGTT-------CCAGGG-TAGCAATACATGCATAGTAAAT-TATTGTTTACAGTAA---TAG--ACAGTC-ATAGGTAAGTTAGGG-GTGC----T-CCCGCATTTGGTTTAAT-G-GTATTGTCTT----A-----------GAAC--------TAT--CT-ACACAT-TACAA-A--AGCATGGAAAC-TTAACA-GGTGG-GC-TT-ccgtaggcccgagatgagttctttttcttacagaatggacagtttaaggcctttctcctacattgtacttaaaacataaattttcattattgtgggaagatgtcaaacaaagatggattgtatcagaattaattgttccagggtagcaatacatgcatagtaaattattgtttacagtaatagacagtcataggtaagttaggggtgctcccgcatttggtttaatggtattgtcttagaactatctacacattacaaaagcatggaaacttaacaggtgggcttttgtc
gi|9 : atgtaaaggagaaaggccgaaaactgtccattgaactgatTTAATGGA-----CAGTTTATGGAGTTACCA-CAACAATA--ACCTATAGAATGG-ACAATT-CAAACAAAAGGTTTACGTCAC-AATCATGttgtc
blockSeqs : T . C . TCAGAA TTC C T . ATACA GC TACATTG C AGAA . AA AT T GGATGGAT T . . . T CCAGGG A CAT TAGT T T G T . . . . T G T A G . ATAAAAAAAAAAGAA G . A . T A . A . . T AACTGCTTAGGCACG A ACC . T AA A . . T A C C G CGTTTTTTT T T G C A A T GT A C A TG G G G C . T A . C T T G G TT T . G . AT A AAA . . T G AAAGA G . T A C GTTG G T A T T ACAT AA A . A . AA A TT CG A GC A TAG G AAT CA G A CG . AG C . GTC A . A T A . CA TT . T . GTC TA T CCCCCT T TC G TT TTT A . GT G AA C CATACATGTACCCCCACCTCAGAGAATATTGAGAGAGAA T C G . TTTCTCTCA A G T TTC A . A GTTTTTTTACAGTAAGAAT A G GGACAGTTTATGGA A G AC A C A .
blockSeqs : G . . . TTCAA . . . . TC . . . AA . G C . GGATGGAT . . . . A TT . . . . T G . . . . . T C T A . . AGAAC G . A . . A . . . . . GTCAATTAT A . . T A T . . T . . . . AATTTTCT . T . . . A . GT . C G . . C . . . T . . . T . . . T T . G . AT . . . . . . AAG A . A A A GTT . . T T . ACA AC A . A . A A . TG . G . . . . . . . . . A A . C A . A T . . . . . . . . . T . . AC . A CC A . C . G . TCCTGATTGAAA A . . . GGTAGGCCC T G . . T . . GTTTTTTCAAGAAGAA . . GAAGTTTGTGA C G . . . T .
blockSeqs : C . . . TCGAT . . . . GT . . . AA . G T . GGAAGATG . . . . A TT . . . . A T . . . . . T . T . . . AGAA . . . . . A . . . . . GTCTTAT A . . . . . . . A . . . . . . . . . . . . . . . . . T . . . . . . AAG G . . G G TG . . A G . CAA CA . . A . A A . TG . G . . . . . . . . . A C . . . . A T . . . . . . . . . T . . TC . A CC . . C . A . TCTGTTTGTTG . . . . TGATTTAA A A . . A . . AT . . GGACA A G . . . T .
blockSeqs : . . . TCA . . . . GA . . . AA . T C . . . . . . A TC . . . . . . . . . . . T . . . . . . AG . . . A G AG . . A . . AT CA . . T . A A . T . A . . . . . . . . . . C . . . . G C . . . . . . . . . C . . TC . T TT . . G . A . TCTGATTGAA . . . . TTTAA A G . . A . . . . . TGC A A . . .
blockSeqs : . . TGA . . . . GT . . . A . T . . . . . . . . TC . . . . . . . . . . . . A . . A . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . T . G CT . . G . . . TCTGATTG . . . . TTAA A C . . A . . . . . ATG A A . . .
blockSeqs : . . TCA . . . . TC . . . . T . G CT . . A . . . TCTGATTG . . . . TTAA A G . . G . . . . G . A . . .
blockSeqs : . . AGA . . . . AA . . . . TCTGTGAG . . . . TTAA A . . . . . . T . . .
blockSeqs : . TTA . . . . TC . . . . . . TT . . . . . . .
blockSeqs : . A . . . . AA . .
blockSeqs : . . . . TC . .
blockSeqs : . . . . AA
blockSeqCons : ** *** NN**** AA**** GGATGGAT******* TC************ A** T*** *** AAG** ** ACA* NA *********************** G** A* ***** ******* ** ** TC* CT* ** N** A* TCTGATTGAG****************************** TTAA************ G***** ****** GT********************** GGACG**************
originalCons : CGAGGGCNGTAGGCCC--GAGATGA-GTTCTTT---CTCT-CAGAACAG---A-AT-G-GACAGTTTN-C---GGCCTTTCT--CC-------TACT-TAA--A--ACA-T-GATTTTC-CTCTTTT-GG---GATGGA---T-TCAAATA-A-AGAT-GTATT-GTATTCAGAATGAATTGTT-------TC-----T-GCAATA---GTA----AAAT-CNTTGTNCACAG-AA---TAG--ACAGTC-ACAGGTAAGTTAAGG-GTGC----T-CTGGCATTTTGTTTAAT-G-CTATTGTTCT----A-----------GAAC--------GATG-CT-ACACAT-TACAA-A--AGCATGGAAAC-TT-ACA-GGTGG-GC-TT-G-----T--CAGNCAT-ATATA---TACA-AGT---GTGTGATGTTTCTGAA-TCA-GTTG--AAAGTTCG---CCTTTGTAA-GATAAGC-ATGTCTTCCTCTTATGGAGAAAA-CGT-CTAATT-T--T-TAAC-TTGGTC-AAAATTT-AAAGAAA--TGAATATGCGCAAAAATACTGATG-GTTAT-ACTTAGAGT--ACACTTTGGATCTAN-AAATGGAAAATGATGAAACACAAAAT-AAGGA-AAATTTTTTAC-GTG--AA-GATGGGTTCATTTT-C-G-ACA-TTTTTTGAATGAGGAACTT-------ACGAATGC-TAGTCAGGATATTGAAAAAT--ATT-GAGC---ACTTTTTTAAA---CCA-TTGAATCAA-GAG-AATTAAACAAGTTACTG--AGGAAAGGACTAAC--AAAAAAAA-CAAGGAAAGACAAGG-GTT-GGCTA-TGCCATTGTTTA-AAGATTTGGTAGCAAAACAGGAAA-AAAACATATTGGGCCAAAAATTCATTTGGATT-----------------------TAC-ATCAACAAGAAG--ATATTTTGAAAATG-A-G-CGATT-A---TTCATGGGAATGT-TAAATGAA---GTGACACA--AAAT-GCAGAG-CAAGAGAA--AAAAGT-GAAAA-GTACCA-----GGGACTGG---AA-TAC-------CACTAGTGAAATTAAAATC-AAATCTGGCAATGTTTC-TTTGGAGTTC--AA--GTTTTGAAGATACG--TAAATTAAATGTTGCA-TTT--CA---TG--TATTTGTTGTTTTCC------CCCTTGGGTACA-TTCCAA-TCTTTA-CCTG-GCA-CCGTCC-AT--TCT--NTTTGT-TGT-AAACTGT-CCAT------------------T-CTG-----ATTGA-----AAAAAAAAAACTG-T-CCA-T-TC---TT----TAA----AAGAATG-----GACAGTTC-T------TCAAAAAGAATG-GAC-AGTT--TTTTC---A-----AGAA-AGACACTT-ACAGGTAA-CTTAATGGA-----T-GT-----GAGTTAGCAACGACAATA--ACCTATAGAATGG-ACAATT-CAAACAAAAGGNTTACGTCAC-AATCATG
finalCons : CGAGGGCNGTAGGCCC--GAGATGA-GTTCTTT---CTCT-CAGAACAG---A-AT-G-GACAGTTTNN----GGCCTTTCT--CC-------TACT-TAAAA----CA-T-GATTTTC-CTCTTTT-GGGATGGAT-------TCAAATA-A-AGAT-GTATT-GTATTCAGAATGAATTGTTTC------------T-GCAATA---GTA----AAAT-CNTTGTNCACAG-AA---TAG--ACAGTC-ACAGGTAAGTTAAGG-GTGC----T-CTGGCATTTTGTTTAAT-G-CTATTGTTCT----A-----------GAAC--------GATG-CT-ACACAT-TACAA-AA--GCATGGAAAC-TT-ACA-GGTGG-GC-TT-G-----T--CAGNCAT-ATATA---TACA-AGT---GTGTGATGTTTCTGAA-TCA-GTTG--AAAGTTCG---CCTTTGTAA-GATAAGC-ATGTCTTCCTCTTATGGAGAAAA-CGT-CTAATT-T--T-TAAC-TTGGTC-AAAATTT-AAAGAAA--TGAATATGCGCAAAAATACTGATG-GTTAT-ACTTAGAGT--ACACTTTGGATCTAN-AAATGGAAAATGATGAAACACAAAAT-AAGGA-AAATTTTTTAC-GTG--AA-GATGGGTTCATTTT-C-G-ACA-TTTTTTGAATGAGGAACTT-------ACGAATGC-TAGTCAGGATATTGAAAAT---ATT-GAGC---ACTTTTTTAAA---CCA-TTGAATCAA-GAG-AATTAAACAAGTTACTGAAG--AAAGGACTAAC--AAAAAAAA-CAAGGAAAGACAAGG-GTT-GGCTA-TGCCATTGTTTA-AAGATTTGGTAGCAAAACAGGAAA-AAAACA-ATTGGGCNAAAAATTCATTTGGATT-----------------------TAC-ATCAACAAGAAG--ATATTTTGAAAATG-AG--CGATT-A---TTCATGGGAATGT-TAAATGAA---GTGACACA--AAAT-GCAGAG-CAAGAGAA--AAAAGT-GAAAA-GTACCA-----GGGACTGG---AA-TAC-------CACTAGTGAAATTAAAATC-AAATCTGGCAATGTTTC-TTTGGAGTTC--AA--GTTTTGAAGATACG--TAAATTAAATGTTGCA-TTT--CA---TG--TATTTGTTGTTTTCC------CCCTTGGGTACA-TTCCAATC-TTTA-CCTG-GCACT-GTCC-AT--TCTN--TTTGT-TGTA-AACTGT-CCATTCTGATTGAG------------------------------AAAAAAAACTG-T-CCA-T-TCTTAA------------AAGAATGG-----ACAGTTC-T------TCAAAAAGAATG-GAC-AGT----------------------AGACACTT-ACAGGTAA-CTTAATGGACG--------------GTTAGCAACGACAATA--ACCTATAGAATGG-ACAATT-CAAACAAAAGGNTTACGTCAC-AATCATG
Alignments
lowQualScore : 11 3333333 11111 1111111 1 111111 11 444444444444444 44444444444444 111 1111 1 1 111 11 1 1 222222 1 1 888888888888888888888888888888888 1 111 333333333333333333 111 1 2222 11 2 11 111 1 1 55555555555555555 1 1 1 222 1111 1 1 11 11 1 1 1 1 11 1 1 1 1 1 3333333 1 11 111 111 1111 1 11 1 22222 1 1 11 11 1 66666666666666666666666 22 111 111 111 11 11111 111 1 2222222 111 111111 1 111 22 444444444444444444 11111 2222222 11111111 111111111111 111 66666666666666666666666666666666 11 5555555555555555555 11111 11111 1
lowQualScore : 1 11 5 777 2222222 555 3 3 3 11111 55 1111111 3 111111 6 77 00 6 111111111111111 6 6 6 6 3 11111111111111 6 444 7777 0 1 1 0 777 33 0 0 222222 8 3 3 0 0 000000000000000000000000000000000 0 3 8 8 111 8 8 8 8 8 666666666666666666 3 777 0 0000 33 0 33 777 1 0 0 6 6 66666666666666666 3 7 3 3 555 7 7 8888 3 6 2 88 6 44 2 0 0 3 0 33 0 3 0 0 0 3 0 3 2222222 2 0 8 11 8 8 444 444 8 8 8 0 2222 0 0 11 6 3 1 77777 6 6 1 1 5 1 66 00 1 11111111111111111111111 3 6 22 3 99 22 6 444 6 111 6 111 99 6 6 99 6 44 6 66666 888 3 1111111 1 1 6 6 99 99 0 99 6 99 111 99 1 999999 5 777 5 77 77 1 77 444 6 44 77 999999999999999999 6 66666 6666666 66666666 1 5 5 333333333333 2 0 77 000 11 3 77777777777777777777777777777777 0 11 5 5555555555555555555 22222 11111 5 66 5 5 1 0
lowQualScore : . .. . ... ....... ... . . . ..... .. ....... . ...... . .. .. . ............... . . . . . .............. . ... .... . . . . ... .. . . ...... . . . . . ................................. . . . . ... . . . . . .................. . ... . .... .. . .. ... . . . . . ................. . . . . ... . . .... . . . .. . .. . . . . . .. . . . . . . . . ....... . . . .. . . ... ... . . . . .... . . .. . . . ..... . . . . . . .. .. . ....................... . . .. . .. .. . ... . ... . ... .. . . .. . .. . ..... ... . ....... . . . . .. .. . .. . .. ... .. . ...... . ... . .. .. . .. ... . .. .. .................. . ..... ....... ........ . . . ............ . . .. ... .. . ................................ . .. . ................... ..... ..... . .. . . . .
lowQualScore : 0 00 0 000 6666666 888 3 3 3 22222 00 8888888 3 000000 7 77 33 7 000000000000000 7 7 7 7 5 33333333333333 7 000 0000 0 0 0 0 555 88 0 0 222222 8 2 2 0 0 000000000000000000000000000000000 0 2 0 0 888 0 0 0 0 0 222222222222222222 2 555 0 8888 22 0 88 555 2 0 0 7 7 77777777777777777 3 3 3 3 777 3 3 0000 3 7 0 33 7 33 0 0 0 2 0 88 0 2 0 0 0 2 0 2 5555555 5 0 0 00 0 0 000 000 0 0 0 8 6666 0 8 00 0 8 4 22222 7 7 7 3 7 0 55 55 3 77777777777777777777777 5 7 88 2 22 77 7 333 7 777 7 777 22 7 7 22 7 00 7 77777 333 3 7777777 7 7 7 7 22 22 7 22 7 22 777 22 7 222222 7 000 7 44 44 4 99 666 7 77 77 222222222222222222 7 77777 1111111 99999999 3 7 7 666666666666 0 4 22 000 33 4 44444444444444444444444444444444 1 99 0 2222222222222222222 55555 11111 4 11 7 7 0 0
consensus : CGAGGGCNGTAGGCCC--GAGATGA-GTTCTTT---CTCT-CAGAACAG---A-AT-G-GACAGTTTNC---GGCCTTTCT--CC-------TACT-TAA--A--ACA-T-GATTTTC-CTCTTTT-GG---GATGGA---T-TCAAATA-A-AGAT-GTATT-GTATTCAGAATGAATTGTT-------TC-----T-GCAATA---GTA----AAAT-CNTTGTNCACAG-AA---TAG--ACAGTC-ACAGGTAAGTTAAGG-GTGC----T-CTGGCATTTTGTTTAAT-G-CTATTGTTCT-A-----------GAA-GAT------------GCT-ACACAT-TACAA-A--AGCATGGAAAC-TT-ACA-GGTGG-GC-TT-G-----T--CAGNCAT-ATATA---TACA-AGT---GTGTGATGTTTCTGAA-TCA-GTTG--AAAGTTCG---CCTTTGTAA-GATAAGC-ATGTCTTCCTCTTATGGAGAAAA-CGT-CTAATT-T--T-TAAC-TTGGTC-AAAATTT-AAAGAAA--TGAATATGCGCAAAAATACTGATG-GTTAT-ACTTAGAGT--ACACTTTGGATCTAN-AAATGGAAAATGATGAAACACAAAAT-AAGGA-AAATTTTTTAC-GTG--AA-GATGGGTTCATTTT-C-G-ACATTTT-TTGAATGAGGAACTT-------ACGAATGC-TAGTCAGGATATTG-AAAA--TA-TT-GAGC---ACTTTTTTAAA---CCA-TTGAATCAA-GAG-AATTAAACAAGTTACTGAA--GAAAGGACTAAC--AAAAAAAA-CAAGGAAAGACAAGG-GTT-GGCTA-TGCCATTGTTTA-AAGATTTGGTAGCAAAACAGGAAA-AAAACA-ATTGGGCCAAAAATTCATTTGGATT-----------------------TAC-ATCAACAAGAAG--ATATTTTGAAAATG-A-G-CGATT-A---TTCATGGGAATGT-TAAATGAA---GTGACACA--AAAT-GCAGAG-CAAGAGAA--AAAAGT-GAAAA-GTACCA-----GGGACTGG---AA-TAC-------CACTAGTGAAATTAAAATC-AAATCTGGCAATGTTTC-TTTGGAGTTC--AA--GTTTTGAAGATACG--TAAATTAAATGTTGCA-TTT--CA---TG--TATTTGTTGTTTTCC------CCCTTGGGTACA-TTCCAA-TCTTTA-CCTG-GCA-CCGTCC-AT--TCT--NTTTGT-TGT-AAACTGT-CCAT------------------T-CTG-----ATTG-AGA---AAAA----A---AACTG-T-CCATT----C-T-----TAAAAGAATGGACAGTTC-TT---CAAAAAGAATGGA--C-A-T--------------AGA--------CACTT--ACAGGTAA-CTTAATGGA---C--------G---GTT-----AG---CAACGACAATA--ACCTATAGAATGG-ACAATT-CAAACAAAAGGNTTACGTCAC-AATCATG
Reference ( family-6810 ) : CGAGGGCNGTAGGCCC--GAGATGA-GTTCTTT---CTCT-CAGAACAG---A-AT-G-GACAGTTTNN---GGCCTTTCT--CC-------TACT-TAA--A--ACA-T-GATTTTC-CTCTTTT-GG---GATGGA---T-TCAAATA-A-AGAT-GTATT-GTATTCAGAATGAATTGTT-------TC-----T-GCAATA---GTA----AAAT-CNTTGTNCACAG-AA---TAG--ACAGTC-ACAGGTAAGTTAAGG-GTGC----T-CTGGCATTTTGTTTAAT-G-CTATTGTTCT-A-----------GAACGAT------------GCT-ACACAT-TACAA-A--AGCATGGAAAC-TT-ACA-GGTGG-GC-TT-G-----T--CAGNCAT-ATATA---TACA-AGT---GTGTGATGTTTCTGAA-TCA-GTTG--AAAGTTCG---CCTTTGTAA-GATAAGC-ATGTCTTCCTCTTATGGAGAAAA-CGT-CTAATT-T--T-TAAC-TTGGTC-AAAATTT-AAAGAAA--TGAATATGCGCAAAAATACTGATG-GTTAT-ACTTAGAGT--ACACTTTGGATCTAN-AAATGGAAAATGATGAAACACAAAAT-AAGGA-AAATTTTTTAC-GTG--AA-GATGGGTTCATTTT-C-G-ACATTTT-TTGAATGAGGAACTT-------ACGAATGC-TAGTCAGGATATTG-AAAA--TA-TT-GAGC---ACTTTTTTAAA---CCA-TTGAATCAA-GAG-AATTAAACAAGTTACTGAA--GAAAGGACTAAC--AAAAAAAA-CAAGGAAAGACAAGG-GTT-GGCTA-TGCCATTGTTTA-AAGATTTGGTAGCAAAACAGGAAA-AAAACA-ATTGGGCNAAAAATTCATTTGGATT-----------------------TAC-ATCAACAAGAAG--ATATTTTGAAAATG-A-G-CGATT-A---TTCATGGGAATGT-TAAATGAA---GTGACACA--AAAT-GCAGAG-CAAGAGAA--AAAAGT-GAAAA-GTACCA-----GGGACTGG---AA-TAC-------CACTAGTGAAATTAAAATC-AAATCTGGCAATGTTTC-TTTGGAGTTC--AA--GTTTTGAAGATACG--TAAATTAAATGTTGCA-TTT--CA---TG--TATTTGTTGTTTTCC------CCCTTGGGTACA-TTCCAA-TCTTTA-CCTG-GCA-CTGTCC-AT--TCT--NTTTGT-TGT-AAACTGT-CCAT------------------T-CTG-----ATTG-AGA---AAAA----A---AACTG-T-CCATT----C-T-----TAAAAGAATGGACAGTTC-TT---CAAAAAGAATGGA--C-AGT--------------AGA--------CACTT--ACAGGTAA-CTTAATGGA---C--------G---GTT-----AG---CAACGACAATA--ACCTATAGAATGG-ACAATT-CAAACAAAAGGNTTACGTCAC-AATCATG
gi|1 : A-GTTCTTTTTCCTCC-CA---CAG---A-GT-GAGACAGTTTTTC--GGCCTTTCT--CC-------T
gi|1 : gtaaCGAGGGCGGTATGTCCACGAGATGA-GTTCTTT---CTCTTCA--ACAG---ACGT-G-GACAGTTTATACAGGCCTTTCTGCCC-------TATTCTAAGGA--GCAAT-GATTTTC-CCCTTTT-GGTAGGATGGGATTT-TCAGATA-ATGGATTGTATTTGAATTCAGATAGAATTGTTCAGGTCGTCATACAT-GCAAAA---GTA----AAAA-TATTGTTTACAG-AAGAATAAGAACAGTCCACATAAAAGTTAAGGCGTGTAAATTGCTGGCATTTTGTT-AAT-GGCTATTGTTTTTA-----------TAAGGATCTCACGTGGATGGCTCACACATCTACAA-AGCAGCGAAGAAACGTT-ACAAGGTGGCGC-TTTG-----TTTCAGAC-T-AT-TA---TACAGAGTAAGGTGTGATGTTTTTGAA-TCA-GTTGCTAAAGTTCGAACTCCTTGTAA-GATAAGC-AAGTCTTCCTCTTATGGAGAAAAGCGTACTAAGTAT--TATAAC-T-GGTC-AAAATTT-AAAGAAACCTGAATATGCGCAAAA-TACTGATGTGTTAT-A--TA-AGT--GCACTTTGGATCTAAGAAATGGAAAATAGTGAAACACAAAAT-AAGGACAAATTTTTTAC-GTAGAAA-GATGGGTTCATTTT-C-G-ACATTTT-TTGAATGAGGTACTTTACATGTACGAATGCCTAGTCAGGATATTG-AAAAATTAATT-GAGC---A--TTTTTAAAAAGCCAATTGAATCAA-GAG-AATTAAGCAAGTTACTG-A--GAAAGGACTAACCAAAAGAAAA-C-AGGAAAGGCAAAG-G-T-GACTA-TGCCATTGTTTA-AAG--TTGGTAG-AAAACAGG-AT-AAAACATATTGGGCC-AAAATTCATTTGGATTTTTTTTTTTTTTTTTTTTTTTTTTACCATC-ACA---AG--ATATTTTGAAAATG-AGG-CGATT-A---TTCATGGGAATGT-TAAATGAA---GTGACACA--AAAT-GCAGAA-CAAGAGGA--AAAAGTGGAAAA-GTAACGCAGCTGGGACTGA---AA-TACATGTATGCACTAGTGAAATTAAAATT-CAATCTGGCAATGTTTCTTTTGGAGTTC---A--GTTTTGAAGATACGTTTAAATTAAATGTTGCA-TTTCCCA---TG--TATTTGTTGTTTTCC------TCCTTGGGTACA-TTCCAATTTTTTA-CCTG-GCA--TGTCC-ATTGTCTTGTTTTGT-TTT-GTCCTGT--CAT------------------T-CTG-----ATTG-AAA---AAAA----A---ACCTGTT-CCATT----C-T-----TAAAAGAATGGAAAGTTCTTT---CAAAAAGAATGGA--C-AGTTTCTCTTC------AGAAGAATAGTCACTT--ACAGGTAA-ATTAATGGG---CAGTTTGTGA---GTT-----AG---CAAC--CAAT---ACCTATAGAATGG-ACAATT-CAAACCAAAGGGTTACGTCACAAATCATGgtcgagggcggtatgtccacgagatgagttctttctcttcaacagacgtggacagtttatacaggcctttctgccctattctaaggagcaatgattttccccttttggtaggatgggattttcagataatggattgtatttgaattcagatagaattgttcaggtcgtcatacatgcaaaagtaaaaatattgtttacagaagaataagaacagtccacataaaagttaaggcgtgtaaattgctggcattttgttaatggctattgtttttataaggatctcacgtggatggctcacacatctacaaagcagcgaagaaacgttacaaggtggcgctttgtttcagactattatacagagtaaggtgtgatgtttttgaatcagttgctaaagttcgaactccttgtaagataagcaagtcttcctcttatggagaaaagcgtactaagtattataactggtcaaaatttaaagaaacctgaatatgcgcaaaatactgatgtgttatataagtgcactttggatctaagaaatggaaaatagtgaaacacaaaataaggacaaattttttacgtagaaagatgggttcattttcgacattttttgaatgaggtactttacatgtacgaatgcctagtcaggatattgaaaaattaattgagcatttttaaaaagccaattgaatcaagagaattaagcaagttactgagaaaggactaaccaaaagaaaacaggaaaggcaaaggtgactatgccattgtttaaagttggtagaaaacaggataaaacatattgggccaaaattcatttggattttttttttttttttttttttttttaccatcacaagatattttgaaaatgaggcgattattcatgggaatgttaaatgaagtgacacaaaatgcagaacaagaggaaaaagtggaaaagtaacgcagctgggactgaaatacatgtatgcactagtgaaattaaaattcaatctggcaatgtttcttttggagttcagttttgaagatacgtttaaattaaatgttgcatttcccatgtatttgttgttttcctccttgggtacattccaattttttacctggcatgtccattgtcttgttttgttttgtcctgtcattctgattgaaaaaaaaacctgttccattcttaaaagaatggaaagttctttcaaaaagaatggacagtttctcttcagaagaatagtcacttacaggtaaattaatgggcagtttgtgagttagcaaccaatacctatagaatggacaattcaaaccaaagggttacgtcacaaatcatgtttttaaatgtacgctatgaagaatgtgt
gi|10 : gtaaaggagaaaggccgaaaaactgtctcactctgtgggaggaaaaagaactgtTTCTTT---CTCT-CA---CAG---A-TT-G-GACAGTTTTC---TGCCTTTCT--CC-------Ttttttaaatgtacgctatgaagaatgtgt
gi|10 : aG-AGA---AAGATCACA---AACTG-T-CCATT----C-TTTCTCTCACAGATTGGACAGTTT-Ttggacagtttgtgatctttctcctacttaaaacatgatttctcttttgaaataaagatgtattgtattcagaatgattttttttacaattagcatacat
gi|10 : aaggagaaaggcagAGAA-AG---A-AT-G-GACAGTTTGT---GATCTTTCT--CC-------TACT-TAA--A--ACA-T-GATTT---CTCTTTT-G-----------------AAATA-A-AGAT-GTATT-GTATTCAGAATG-ATTTTT-------TT-----T-ACAATctacttaaaacatgatttctcttttgaaataaagatgtattgtattcagaatgattttttttacaattagcatacat
gi|11 : aaggagaaaggcagaaaactgtccaatctgtgagA--ACCTATAGAATGG-ACAATT-CAAACAAAAGAACTACGTCAC-AGTCATGtagcatacat
gi|11 : A-GTTCTTT---CTC------ACAG---A-AT-G-GACAGTTTGA---GACTTTTatttaaaagtctcaaactgtccattctgtgagaaagaactactgccgtcgattagtcctt
gi|12 : aacctatagaatggacaattcaaacaaaagaactacgtcacagtcatgatttGAA-AG---A-AT-G-GACAGTT-GT---GATCTTTCT--CC-------TACTCTAA--AGAACA-T-GATTTTC--TCTTTT-G-----------------AAATATA-AGAT-GTATT-GTATTAAAGAGGTTTTTTT-------TT-----T-ACAATA---GCA----actgccgtcgattagtcctt
gi|13 : ATCA-GTTCTTT---CTCT----GACAT---A-AT-A-GACAGTTTTC---GGCTTCTAT--CT-------TA
gi|14 : gtaattCCTTGGGTACA-TTCCAA-TCTTTA-CCTG-ACA-CCGTCT-AT--GCT--CTTTGgggggttgagaccagttgtttctttcacagaatg
gi|15 : --------------AGA--------CACTT--ACAGGTAA-CTTAATG-----C-------------TT-----AG---C-ACGACAATA--ACCTATA
gi|16 : -TGCCATTGTTTA-AAG-TTTGGTAGCAAAACAGAAAA-AAAA
gi|2 : CGAGGTCTGTAGGCT---GAGATGACGTTCTTT----TCT-CAGAACAG---A-ATTG-GACAATT-AA---AGCCTTTCT--CC-------TACT-TAA--A---CA-T-TATTTTC-TTTTTTTTGG---GATGGA---T-TCAAATA-A-AGAT-GTATT-GTATTCAGAATGAATTGTT-------TC-----T-GCAATA---GTA----AAATTCTTTGTGCACAG-AA---TAG--ACAGTC-ACAGGTAAGTTAAGG-GTGC----T-CTGGCATTTTGTTTA-T-G-CTATTGTTCT-ATAAAAAAAAAAGAA-GAT------------GCT-ACAC-T-TACAA-A---GCATGGAAGC-TT-ACA-GGTGG-GC-TT-G-----T--CAATTAT-ATATA---TACA-AGT---GTGTGATGTTTCTGA--TCAAGTTG--AAAGTTCG---CCTTTGTAAAGATAAGCCATGTAATC-TCTTATGTA-AAAA-CGT-TT--TT-T--T-CAAC-TTGGTCGAAAATTT-AAAGAA---------TGCGCAAAAATACTAATG-GT-AT-ACTTAAAGTTGACACTTTGGATCTAG-AAATGGAAAAT-AGGAAACACAAAATCAAGGA-AAATTTTTTAC-GTG--AA-GTTGTGTTCATTTTTC-G-ACATTTTTTTGAATGAGGAACTT-------ACGAATGC-TAGTCAGGATATTG-AAAA--TA-TT-GAGC---ACTTTTTTATA---CCA-TTGAATCAG-AGG-AATTAAACAAGTT--TGAAAGAAAAGGACTAAC--AAGAAAAA-CAAGGAAAGGCAACA-GTT-GGCTA-TGTCATTGTTTA-AAGATTTGGTAGCAAAACAGAAAA-AAAACATATTGGGGAAAAAATTTATTTGGATT-----------------------T-C-ATCAACAAG-AG--ATATTTCGCAAATGAA-G-CGATTAA---TTCATGGAAATGT-TAGATGAA---GTGACACA--AAAT-GCAGAG-CAAGAGAA--GAAAGT-TAAAA-GTA-CA-----GGGACTGG---AA-TAC-------CAC-AGTG-AATTAAAATC-AAATCTGGCAATTTTCT-TTTGGAGTTC--AATTTTTTTGAAGATATG--TAAATTAAATGTTGCA-TTT--CA---TG--TATTTGTT-TTTCCC------CCCTTGGGTACA-TTCCAA-T-TTTA-CCTG-ACA-CCGTCTAAT--GCT--CTTTGT-TGTAAAACTGT-TCAT------------------TCCTG-----ATTGAAAA---AAAA----A---AACTC-T-CCATT----CTT-----TAAAAGCATGAACAGTTC-TT---CATAAAGAATGGA--CAAGTTTTTTCAAGAAGAAAGA--------CACTTA-ACAGGTAA-TTTAATGAAGTTT--------GTGAGTT-----AG---CAACGACAATA--ACCTATAGAATGGAACAATT-CAAA-AAAATATTTACGTCAC-AATCATGa
gi|3 : -----TGAAGAAATGGACAGTTT-TTTTACAGTAAGAAT------------------------AGA--------CACTT--ACAGGTAAGCTTAAC------T--------G---CTT-----AG---GCACGAC-ATA--ACCTATAAGATG
gi|3 : T-TACAGTA--AGAATAGACAC-TT-ACA-GGTAA-GC-TT-AACTGCT--TAGGCACGACATAACCTATA-AG----ATGTGATGTTTCTGAAATCATGTTG--AAAGTTCG---CCTTTGTAA-GATAAGC-ATGTCTTCCTCTTATGGAGAAAA-------AATT-TTCT-TAACTTTGGTT-CAAATTTCAAAGAAA--TGAATATGCGCAAAAATACTGA-G-G-TATAACTTAGTGT--ACACTTT-GATCTAC-GAATGGAAAATGATGAACCACAAAAT-AAGGA-AAATCTTTTACAGTG--AACGATGGGTTTA--TT-CGG-ACA-CTT-TTGACTGAGGAAACT-------ACGAAT-C-TAGTCAGGATATTGAAAAA--TA-TTAAAGCAAAACTTTTTAAAA---ACA-TTGAATCACTGAG-AATTAAACAAGTTACTG-A--GAAA-GACTAAC--AAAAAAAATCAAGGAAAGACTAAG-GTTGGGCTAGTGCCATTGTTTATAAGTTTGGGTAGCAAAGCAGGAAATAAAACA-AATGGGCACAAAATTCCTTTGGATT-----------------------TAC-ATC-ACAAGAAGTTATATTTT-AAAATG-A-GCCGATT-ATAGTTCATGGGAATGTGTAAGTGAAAATGTGACAAC--AAATGGCAGAGACAAAAGAA--AAAGAT-GAAAAGGTACCA-----GGGGCTGAGTCAA-TAC-------CACTAG-GAAA-TAAAATCAAAATCTGGCAATG-TTC-TTTGGAATTTCAAA--GTTTTGAAGATATG--T--ATTAAATGTTGCATTTT--CAGTCTG--TA-TTGTTGTTTTCC------CTCTTGGGTACATTTCCAA-T-TTTA-CCT--TCC-TTGTCC-AT--TCTG-TTTTGT-TGT-AAACTGTCCCAT------------------T-CTG-----ATT---GA---AAAA----A---ACCTG-TCCCATT----C-T-----TAAAAGAAT-GACCGTTC-TT---CAAGAAGAATAGA--C-A------------------------------TT--ACAGGTAA-CTTAA---A---T--------G---GTT-----AG---CAACAACAATAACACCTATAGAAT-G-ACAATT-CAAtgatgtttctgaaatcatgttgaaagttcgcctttgtaagataagcatgtcttcctcttatggagaaaaaattttcttaactttggttcaaatttcaaagaaatgaatatgcgcaaaaatactgaggtataacttagtgtacactttgatctacgaatggaaaatgatgaaccacaaaataaggaaaatcttttacagtgaacgatgggtttattcggacacttttgactgaggaaactacgaatctagtcaggatattgaaaaatattaaagcaaaactttttaaaaacattgaatcactgagaattaaacaagttactgagaaagactaacaaaaaaaatcaaggaaagactaaggttgggctagtgccattgtttataagtttgggtagcaaagcaggaaataaaacaaatgggcacaaaattcctttggatttacatcacaagaagttatattttaaaatgagccgattatagttcatgggaatgtgtaagtgaaaatgtgacaacaaatggcagagacaaaagaaaaagatgaaaaggtaccaggggctgagtcaataccactaggaaataaaatcaaaatctggcaatgttctttggaatttcaaagttttgaagatatgtattaaatgttgcattttcagtctgtattgttgttttccctcttgggtacatttccaattttaccttccttgtccattctgttttgttgtaaactgtcccattctgattgaaaaaaacctgtcccattcttaaaagaatgaccgttcttcaagaagaatagacattacaggtaacttaaatggttagcaacaacaataacacctatagaatgacaattcaaca
gi|4 : tgaagaaatggacagtttttACACAGAAT-AAAGA-AAACTT---AC-CTG--AA-GATGGTTTCATTTT-C-GGACATTTC-T--GATGAGGAACTT-------ATGAATGC-TAGTCAGGATATTG-AAAA--TA-TT-GAGC---GCTTTCTTAAA---CCA-TTGAATCAA-GAGGAATTAAACAAGTTACTGAA--GAAA----T--------------CGAGGAATGACAAGG--TG-GGCTA-TGCCATTGTTTT-GAAATT----AGCAAAACAGGAAA-TAAATA--TTGGACCATAA-TTCATTTGGATT-----------------------TAC-ATCA-CAAGAAG--ATATTTTGAAAATA-A------TT-A---TTCATGGGAACGT-TAAATGAA---GTGACACA--AAAT-GCAGAG-GAGGAGAACGAAAAAT-GAAA--GAAACA-----GGGACTGG---AAATAC-------TACTAGTGAAATTAAAATC-AAATCTGGCAATGTTTT-TTAGGAGTTC--AA--GTTTTGAAGATATG--TAAATTAAATGTTGCA-TTT--CA---TGTATATTTGTTG-TTTAC------CCCTTGGGTACA-TTCCAA-ACTTTA-CCTG-GCA-CTGTCC-AT--TCT--GTTTGTGTGT--AACTAT-CCAT------------------T-CTG-----TTTGTTG------------T---AACTG-T-CCATTTTGAT-T-----TAAAAAA------AATT-----------AAGAATGGA--T-AAT--------------AGA--------CACTT--ACAGGTAA-CTTAATGGA---C--------A---GTT-----AG---C-ACAACAATA--ACCTATAGAATGG-ACAATT-CAAACAAAca
gi|5 : TCAGGATATTG-AAAA--TA-TT-AAGC---ACTTTTTTAAA---CCA-TTGAATCAA-GAG-AATTAAACAAGTTACTGAA--GAAAGGACTAAC--AAAAAAAAACAAGGAAAGACAAGGAG---GGCTA-TGCCAATGTATA-AAGATT-GGAAGCAAAGCAGGAAA-AAACAA-ATTGGGCCAAAA-TTACTTTGGAAT-----------------------TAC-ATCA-CAAGAAG--ATATTTTGAAAATG-A-G-CGATT-A---TTCATGGGAATGT-TAAATGAA---GTGACACA--AAAT-GCAGAG-CAAAAGAA--AAAGAT-GAAAA-GTACCA-----GGGGCTGGC--AA-TAC-------CACTAGTGAAATTAAAATC-AAATCTGGCAATGTTTC-TTTGGATTTC--AA--GTTTTGAAGATATG--TAAATTAAATGTTGCA-TTT--CA---TG--TATTTGTTGTTTTCC------CTCTTGGGTACA-TTCCAA-TCTTTAGCCTGTTCATTTTTCC-AT--TCT--GTTGTT-TGT--AACTGT-CCAT------------------T-CTG-----ATTG-------AAAA----A---ACCTG-T-CCATT----C-T-----TAAAAGAATGCACATTCT-TT---CAAGAAGAA----------T--------------AGA--------CACTT--ACA-GTAA-CTTAAT---------------T---GTT-----AG---CAA--ACAATA--ACCTATA-AATGG-ACAATTCCAAACAAt
gi|6 : AAAACAGGAAG-AA-------TG---------TTCATT-AGATT-----------------------TTC-ACCA-TAAGAAG--GCATTT-AAAAATG-A-A-TGATT-A---TTTATAGGAATAT-GAAATGTA---GAGACACACAAAAT-ACAGAG-GAAGAGAA--ACGAGT-GAAG--GTACCA-----GGGACTGG---AAACAT-------CACTAATGGAACCAAAATC-AAATCTGGCGATGTGTC-CTTCGAGTTC--AA--GTTTTGAAGATACG--TAAACTAAATG----------------------TTTGTTGCCCCCCCCCCCTCCCTTGGGTACA-CTGCAA-TCTTTA-CATG-GCA-CTTTCTAAT--TCT--ATTTGT-TGT--AATTGT-CCATCATACATGTACCCCCACCT-CAGAGAATATTG-AGAGAGAAAA----AAACAACTG-T-CCATT----C-T-----T--AATAATGGACAGTTC-TT---AAAAAAGAATAGA--C-Atta
gi|7 : GCCC--TCGATCA-GTTCTTT---CTCT-CA---CAG---A-AT-G-GACAGTTTTC---GGCCTTTCT--CC-------ctta
gi|7 : CGAGGGCGGTAGGCCC--GAGATGA-GTTCTTT---CTC---AGA-CAG---A-AT-G-GACAATTTAA---AGCCTTTCT--CC-------TACT-TAA--A--ACA-T-TATTTTC-CTTTTTT-GG---GATGGA---T-TCAAATA-A-AGAT-GTATT-GTATTCAGAATGAATTGTT-------TC-----T-GCAATA---GTA----AAAT-CTTTGTGCACAG-AA---TAG--ACAGTC-ACAGGTAAGTTAAGG-GTGC----T-CT-GCATTTTGTTTAATGG-CTATTGTTCT-A-----------GAA-GAT------------GCT-ACACAT-TACAA-A--AGCATGGAAGC-TT-ACA-GGTGG-GCTTT-G-----T--C--TTAT-ATATA---TACA-AGT---GTGTGATGTTTCTGAA-TCA-GTTG--AAAGTTCG---CCATTGTAA-GATAAGC-ATGTggtaggcccgagatgagttctttctcagacagaatggacaatttaaagcctttctcctacttaaaacattattttccttttttgggatggattcaaataaagatgtattgtattcagaatgaattgtttctgcaatagtaaaatctttgtgcacagaatagacagtcacaggtaagttaagggtgctctgcattttgtttaatggctattgttctagaagatgctacacattacaaaagcatggaagcttacaggtgggctttgtcttatatatatacaagtgtgtgatgtttctgaatcagttgaaagttcgccattgtaagataagcatgt
gi|8 : ggagaaaggccgaaaactgtccattctgtgagagaaagaactgat---CCCT-C-GATCAGTTCA-AT-G-GACAGTTTTC---GGCCTTTCT--CC-------T
gi|8 : atgtaaCGAGGGCCGTAGGCCC--GAGATGA-GTTCTTT---TTCT-T---ACAG---A-AT-G-GACAGTTTAA---GGCCTTTCT--CCTACATTGTACT-TAA--A--ACA-TAAATTTTCATTATTGT-GG---GA-AGA---TGTCAAACA-A-AGAT-GGATT-GTA-TCAGAATTAATTGTT-------CCAGGG-TAGCAATACATGCATAGTAAAT-TATTGTTTACAGTAA---TAG--ACAGTC-ATAGGTAAGTTAGGG-GTGC----T-CCCGCATTTGGTTTAAT-G-GTATTGTCTT-A-----------GAACTAT-------------CT-ACACAT-TACAA-A--AGCATGGAAAC-TTAACA-GGTGG-GC-TT-ccgtaggcccgagatgagttctttttcttacagaatggacagtttaaggcctttctcctacattgtacttaaaacataaattttcattattgtgggaagatgtcaaacaaagatggattgtatcagaattaattgttccagggtagcaatacatgcatagtaaattattgtttacagtaatagacagtcataggtaagttaggggtgctcccgcatttggtttaatggtattgtcttagaactatctacacattacaaaagcatggaaacttaacaggtgggcttttgtc
gi|9 : atgtaaaggagaaaggccgaaaactgtccattgaactgatAAAG--TGGATTC-A-T--------------AAA--------C-CTTCAACAG-----TTTAATGGA---C--------A---GTTTATGGAGTTACCACAACAATA--ACCTATAGAATGG-ACAATT-CAAACAAAAGGTTTACGTCAC-AATCATGttgtc