lowQualScore : 11111111111111111111111
lowQualScore : 111 2 1 2 555555555555555555555555 2222222 4444444444 1 11 44444 22222 3333 33333333 2222 222 22 22 2222222222 11 111 333 222 3333 333333333333333 444 55555555555555555 1111111 1 44444444444 111 00000000000000000000000 1 2222222 2
lowQualScore : 8 777 1 0 2 2 2 0 55 000000000000000000000000 1111111 6 6 2222222222 5 8 11 44444 8 8 99999 0 9999 8 6 33333333 77 5 77 0000 5 77 0 222 55 11 8 00 0 0000000000 66 77 5 000 000 5 999 5 555 6 1111 3 99 666 3 888888888888888 6 5 222 11111111111111111 6666666 5 5 0 44444444444 888 5 5 44444444444444444444444 1 5 5 8888 3333333 2 5 55
lowQualScore : . ... . . . . . . .. ........................ ....... . . .......... . . .. ..... . . ..... . .... . . ........ .. . .. .... . .. . ... .. .. . .. . .......... .. .. . ... ... . ... . ... . .... . .. ... . ............... . . ... ................. ....... . . . ........... ... . . ....................... . . . .... ....... . . ..
lowQualScore : 3 555 2 0 5 5 5 0 88 222222222222222222222222 7777777 7 7 5555555555 0 0 00 00000 0 0 00000 8 2222 0 7 99999999 99 7 99 9999 7 99 8 666 88 00 0 44 8 9999999999 44 11 7 000 000 7 444 7 000 7 8888 2 22 888 7 777777777777777 7 7 999 99999999999999999 2222222 0 0 0 99999999999 666 7 7 77777777777777777777777 7 0 2 3333 1111111 1 7 99
consensus : TATTCATG---GTGTAGTACA-CTTTCAGACATTGCAGACAAACAATGTGGCAAACTGC-GAACATA-TTCATT-ATTCAAAACAAGATTCTGTA-------GAG-AA-AA----------TATTTTTCAGTAATTC-GTAATCCTCAAGTCTTGN-AATGTTTTA----CA-AATTTC-AG-A--ATCAGTTCTCATTCTTTGG--C-TATTGA-AACT-G--G-CG--T--TACA-CAA--AA-ACAC-AAGTAAA--TGAGAGAAAATGTAGTGTCTGNAAGT-CTGACTGTGTTGAA---GATG-A-TTCC-TTTT-ACA-T---TTGA---T-TGT-A-CAG-CATA---C-AACATCT-AAGAAAACC--ATTCATG-A-ATCCA--T--GA--A--T--CTTG-TATAA-AAA--TTTAT------A-------AACCTG-------TGTAA-TAG-AG-AAA----NA-----TTATTTGGCTTTAT-G-AGTAATGAATGT-GACAGT-GTN----ATT-GAAATTTTGCCAACT-ACAT-ATATA-AGCT-GC-TCACAA-TTGAGAAAA
Reference ( gi|3 ) : TATACATG---GTGTATTACA-CTTTCAGACATTGCAGACAAACA-TGTGGCAA-CTGTTGAACATA-TTCATT-AT-CAAAACAAGATTCTGTA-------GAG-AA-AA----------TATTTTTCAGTCATTC-GTAATCCTCAAGTCTTGA-AATGTTTT-----CA-AATTTC-A--A--ATCAGTTCTCATTCTTTGG--CTTATTGA-AACT-G--G-CGC-T--TACA-CAA--AA-A-AC-AAGTAAA--TGAGAGAAAAT-TAGTGTCTGC-AGT-CTGACTGTGTTGAA---GATG-ATTTCC-TTTTAACA-T---TTGA--GT-TGT-A-CAG-CATA---C-AACATCTAAAGAAAACC--ATTCATA-A-ATCCA--T--GA--A--T--CTTG-TATAA-AA---TTTAT------A-------A--CTG-------TGTAA-TAG-AG-AAA----TA-----TTATTTGGCTTTAT-G-AGTAATGA--GT-GAC----GTA----A---GAAATGTTGCCAACT-ATATAATGTA-AGCTGGC-TCACAA-TTGAGAAAA
gi|2 : TATTCATG---GTGTAGTACA-CTTTCAGACATTGCGAACAAATA-TG---CAA-TTATT------------------CAAAACTAAATTCTGTACTATGTAGAG-AA-AAC---------TA-TTTTCAGTAATTC-GTCATCCTCGCGTCTTGC-AATTTTTTTCCTCCA-AATTTC-AG-A--ATAAGTTCTCATTCTTTGG--C-TATTGA-AGCTGG--G-CG--T--TACA-CAA--AA-ACAC-AAGTAAA--TGAGAGAAAAT---GTA------AGT-CTGAC--AGTTG-----------------------TA-T---TTGACCGTATAT-A-CAG-CATAC--C-AACACCT-AAGAAAACC--ATTTATAGA-ATCCA--T--GAACA--C--CTTG-TATAA-GAAC-TTTAT------A-------AACCTG-------TGTAA-TAG-AGAAAA----AA-----TTATTTGGC-TTAT-G-AGTAATGAATGT-GACAGT-GTC----ATT-GAA----TGCTAACT-ACAT-ATAT--AGCT-GT-TCACAA-CTGAGAAAA
gi|9 : aaTATTCATGTGTGTGTAGTACA-CTTTCAGACATTGCAGACAAACAATGTGGCAAACTGC-GAACATAGTTCATTTATTCAAAACAAGATTCTGTA-------GAG-AA-AA----------TATATTTCAGTAATTC-GTAATCCTCAAATATTGA-AATGTTTTA----CA-AATTTC-AG-A--ATCA-TTCTCATTC-TTGG--C-TATTGA-AACT-G--GACG--T--TACA-CAA--AA-ACAC-AAGTAAA--gttgatttatcattaccttgttatttta
gi|10 : ATACATG---GTGTAGTACA-CTTTCAGACATTGCAGACAAACAATGTGGCAAACTGT-GAACATA-TTCATT-ATTCAAAACAAGATTCTGTA-------GAG-AA-AAA---------TATTTTTCAGTAATTC-GTAATCCTCAAGTCTTGA-AATGTTTTA----CA-AATTTCAA--A--ATCAGTTCTCATTCTTTGG--C-TATTGA-AACT-G--A-ATCAT--TACT-CCATGAA-G-CC-AAATAAA--T
gi|16 : CATG---GTGTG--ACAACTTTCA-ACATTG-AGA--AACA-CTTTGCAAACTGC-GAACATA-TGCATT-ATTCAAAACAAGATTCTGTA-------GAGAAA-AA----------TATTT
gi|1 : tgtTTCTGTA-------GAG-AA-AAACATATTTAATATTTTTCAGTAATTCTATAATCCTCAAGTCTTGCCAATGTTCT-----TACAATTTC-AGCA--ATCTGTTCTCATTCTTTGGGAC-TATTGATAACT-GAAG-CGT-TACTATAGCAA--AACA-ACAAAGTAAAATTTAAAGGAAATGTAGTGT-TGCAAGTCCTCACTGTGTTGAAAAGAATG-AATTCCATTTTAATATT---TTGA--CT-CGT---TAG-C-TAAACC-AACA-CT-AAGAAAACCAAATTCATA-AGATCCATTT--CA--A--TTCCTTG-TATAATAAAACTTTAT------AAACAAATA--CTGTAACATTTGTAATTAG-AA-AAA----AAAAGAGATATTTGGC--TAT-GAAGTAATGAATGT-GAC-----------------AGTGTT---AATTGAAATTAT-TA-TGCTGGCTTCACAATTTGAGAAAA
gi|19 : caagtagcagtgcttcaatattat-------GAG-AATAA----------TATTTTTCAGTAATTT-GTAATCCTCAAGagttgaatgtatcaatcacctagatgttatttttagcttatctatctttggagaaattacttcaatctatgaagttaatggtctatatgaaaacttttgtttcctttgctatggccctctctctggagctcggaaattggaaataaattataaacct
gi|4 : -AATGTTTAA----CA-AATTTC-A--AGAATCAGTTCT-ATTCTTTG----CTATTGA-AATT-G----CG--T--TACA-CAA--AC-A--C-AAGTAAA--TGAGAGAAAAT-GTGTGTCTGA-GAG-CTGA---TGTTGAA---GCTG-A-TTCA-TTTGTACA-T---TTGA---T-TGTAA-CAGACATA---C-CAAATT--AAGAAAACC--ATTCATG-G-AATCA--T--GA--A--TACTTTG-TAAAA-AAC--TTTATA-----A-------A--CTG-------TGTAA-TAG-AG-AAA----AA-----TT-TTTGG--TTAT-G-AGT-ATGAATGT-GACAT--GTG----ATT-GAAATTTTGCCAAC-----TAATATA-TGCT-GC-TCA-AA-TTGGGAGAA
gi|7 : t-G--G-CG--T--TACA-CAA--AA-C-AC-AAGTAAA--TG-GAGAAAAT-TAGTGTCTGA-AGT-CTGACTGTGTTGAA---GATG-A-TTCC-TTTTAACA-T---TTGA--GT-TGT-A-CAG-CATA---C-AACATCT-AAGAAAACC--ATTCATG-A-ATCCA--T--GT--C--T--CTTG-TATAA-AAC--TTTAT------A-------C--CTG-------TGTAA-TAG-AG-AAA----T------TTATTTGGCTTCATGG-AGTAATGA--attgaattatcataattggttattttaatttatctatcttttaggatggttttcttctgtggttttatgtattctttggtaatgctctgggcccaaaatggaataaaattacttacttatttcttac
gi|17 : aactatataatgtaagctggctcacaattgagaaaatnnnnnnnnnnnnnnnnnnnnnnnnn--G-CG--T--TACA-CAA--AA-ACAC-AAGTAAA--TGAGAGCAAATGTAGTGTCTGCAAGT-CTGAC--TGTTGAA---GATGCATTCCA-TTTT-GTA-T---TTGA---C-TAT-A-TAG-ttcagtttcaa
gi|15 : -ATATCC-TTT--GTA-T---TTGA---T-TGT-A-TAG-CATAC--C-AACGT----AGA-------ATCCATA-A-AC------------A--C--CTTG-TATGA-GAAC-TTTAT------A-------AACCTG-------TGTAA-TAG-AG-AAAAGAGT------TTATTTGGCTT
gi|5 : tcTTCC-ATTTTACA-TATATTGA---T-TGT-AGCAG--ATA---CCAACACCTAA-GAAA--------TAGG-A-ATTCA--TTAGA--ACAT--ATTGCTATAA-AAA--TTTGTTGAGAGA-------G--CCG-------TGTAA-TAG-AGAAAA----AA-----TTATTTGGC--TGA-G-AGTAATAAT-GTGGAC----GTGTTATG---AAAATTTTGCCAATT-ACAT-ATAT--AGCTTGC-TCACAA--TGAGAAAAat
gi|6 : -AA---TTTAT------A-------AACCTT-------TGTGA-TAGCAA-AAA----GT-----TTATCTGACTT-AT-G-AGCAATGAATGT-GACAGTGGTAT---T---GAAAT-TTGC------ACAT--TGTACAGCT-GT-TCATCA-TTAAAAAAAgttgattattcatactttgtttattttactttatctatcaattctagataatttttcttctatgatttatgtataatgaactttgttctttgcatgccctcttggaaaagcctgaaaggaaaataaattatactta
gi|12 : tgattagagcagacaggccagacacatattttatagggcacccttgaagttgttatataattaagaacttTG-------TGTAA-TAG-AG-AAAC---TT-----TTATTTGGC-GTAC-G-AGTAATGAATGT-GACAGT-GTT----ATTGAAAATTTTGCCAACT-ACAT-ATAT--AGCT-GC-TCACAT-TTGAGAAAAagttgatttaccataacattgttattttactttatccatcttttgcataatcattctattcctatctttacttgccctctgggtcccaaattagaaataaattatatacttacttactat
gi|7 : AACT-ATATAATGTA-AGCTGGC-TCACAA-TTGAGAAAAttctattgatcataactttgttattttactttatc
6 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|8 ): TTTTTATAATGAATGTGTCAGTGGTTAACATGTAGTGAAATTTTTGCCAACGACATATAGCTGCTCATTAAATTAACATCAACTTAACAAAGTCGATTTATTGATCATAACCTATGGGTCTATTTTACCTATCTGTAAAATATCTGTCTTTTGGATAACTCTCTCTTTTATGACTTTGTTATATCAGTCTTGCAACATGTATTCTTGGCCCCAATTGGAAAAATCAGTTAATTTACTTACTACCTTAC
Unaligned ( gi|11 ): CATAAACTGTTTGTTATATTTACTTATCTATCATTGGATGCACTTTCTCTGATCTGTGTTATACTTTATGTAATCTCGATTGTATGCCCTCTGGCCCCAAAATTGGAAATAAATTAGCTATACTTACTTACTATATTAC
Unaligned ( gi|13 ): CATAAACTGTTTTGTTATTTTACTTTATCTATCATTGGATGCACTTTCTTATCTTGTATATGTTTATGTATATCTCATTGTATGCCTCTGGCGCCCAAAATTGGAAATAAATTGCACTAACTTACTTACTT
Unaligned ( gi|14 ): CATAACTTTGTTATTTTACTTTATCTATCATTTGGATGGTCTTTCTTCTGTGGTTTATGTATATCTTTGTATGCCCTCTGGGCCCAAAATTGGAAATAAATTACTTACTTACT
Unaligned ( gi|18 ): TCTTGTTTATGTGAAACTCTGTATTCTTTGTATGCCCTCTGGGCCCAAAATTGGAAATTACTTGTCATTTTATTTAAATTATT
Unaligned ( gi|20 ): CCCAAAATTGGAAATAAATTACTTACTTACGCA
Alignments
lowQualScore : 111 1 1111111 1 3333333333 11111 111 22222 1111 11 111 1 1 11 1 11111 333333333333 1 1111111111111 1111111 222222222222 11 11 111111 111 11 11
lowQualScore : 1 444 5 5 5 8 0 8 0 8 0 8888888 1 5 0000000000 6 77 6 77777 444 99 6 6 22222 5 0000 66 888 66 6 33 6 55 111 6 1 5 5 5 22 888 5 0 5 777 5 77777 6666 1 77 5 5 1 222222222222 5 0 77 5 5555555555555 4444444 4 4 4 666666666666 44 5 5 5 3 11 1 444444 5 0 0 5 1 1 000 1 99 4 00 66 4
lowQualScore : . ... . . . . . . . . . ....... . . .......... . .. . ..... ... .. . . ..... . .... .. ... .. . .. . .. ... . . . . . .. ... . . . ... . ..... .... . .. . . . ............ . . .. . ............. ....... . . . ............ .. . . . . .. . ...... . . . . . . ... . .. . .. .. .
lowQualScore : 4 000 4 0 6 0 8 0 6 0 8 6666666 4 7 7777777777 7 77 7 33333 333 22 7 7 00000 0 6666 99 999 99 7 22 7 77 777 7 4 0 0 0 22 888 0 0 0 111 0 11111 7777 4 99 7 7 7 111111111111 7 1 99 0 8888888888888 4444444 4 4 4 666666666666 66 0 0 0 2 99 0 444444 0 1 1 0 4 9 888 4 99 4 66 11 4
consensus : TATTCATG---GTGTAGTACACTTTCAGACATTGCAGACAAACAATGTGGCAAACTGC-GAACATA-TTCATT-ATTCAAAACAAGATTCTGTA-------GAG-AA-AA----------TATTTTTCAGTAATTC-GTAATCCTCAAGTCTTGA-AATGTT-TT----ACAAATTTCA-G-AATCAGTTCTCATTCTTTGG--C-TATTGA-AACTG--G--CG-TTAC----ACAA--AA--ACACAAGTAAA--TGAGAGAAAATGTAGTGTCTGCAAGTC-TGACTGTGTTGAAGA---TG-A-TTCCATTT-T-A-CAT---TT-GA-TT-GT-A-CAG-CATA---C-AACATCT-AAGAAAACCA--TTCAT-GA-ATCCAT--G--AA--T-CCTTG-TATAA--AAACTTTAT----AAAC-----CTGT-------GTAAT-AG-AG-AAA-AA---T-----TATTTGGCTTTAT-GA-GTAATGAATGTG-ACAGTG--TNAT------TG-AAATTTT-GCCAACTACAT-A-TATA-AGCT-G--CTCAC--AA-TTGAGAAAA
Reference ( family-6757 ) : TATTCATG---GTGTAGTACACTTTCAGACATTGCAGACAAACAATGTGGCAAACTGC-GAACATA-TTCATT-ATTCAAAACAAGATTCTGTA-------GAG-AA-AA----------TATTTTTCAGTAATTC-GTAATCCTCAAGTCTTGN-AATGTT-TT----ACAAATTTCA-G-AATCAGTTCTCATTCTTTGG--C-TATTGA-AACTG--G--CG-TTAC----ACAA--AA--ACACAAGTAAA--TGAGAGAAAATGTAGTGTCTGNAAGTC-TGACTGTGTTGAAGA---TG-A-TTCC-TTT-T-A-CAT---TT-GA-TT-GT-A-CAG-CATA---C-AACATCT-AAGAAAACCA--TTCAT-GA-ATCCAT--G--AA--T--CTTG-TATAA--AAA-TTTAT----AAAC-----CTGT-------GTAAT-AG-AG-AAA-NA---T-----TATTTGGCTTTAT-GA-GTAATGAATGTG-ACAGTG--TNAT------TG-AAATTTT-GCCAACTACAT-A-TATA-AGCT-G--CTCAC--AA-TTGAGAAAA
gi|1 : TTCTGTA-------GAG-AA-AAACATATTTAATATTTTTCAGTAATTCTATAATCCTCAAGTCTTGCCAATGTTCTT----ACAA-TTTCA-GCAATCTGTTCTCATTCTTTGGGAC-TATTGATAACTGAAG--CG-TTACTATAGCAA--AACAACA-AAGTAAAATTTAAAGGAAATGTAGTGT-TGCAAGTCCTCACTGTGTTGAAAAGAATG-AATTCCATTT-T-AATAT---TTTGA-CTCGT---TAG-C-TAAACC-AACA-CT-AAGAAAACCAAATTCAT-AAGATCCAT--TTCAA--TTCCTTG-TATAATAAAACTTTAT----AAACAAATACTGTAACATTTGTAATTAG-AA-AAA-AA---AAGAGATATTTGGCT--AT-GAAGTAATGAATGTG-ACAGTGT-TAAT------TG-AAATT------------AT---TAT---GCT-GGCTTCAC--AATTTGAGAAAA
gi|10 : caagtagcagtgcttcaatattatATACATG---GTGTAGTACACTTTCAGACATTGCAGACAAACAATGTGGCAAACTGT-GAACATA-TTCATT-ATTCAAAACAAGATTCTGTA-------GAGAAA-AA----------TATTTTTCAGTAATTC-GTAATCCTCAAGTCTTGA-AATGTT-TT----ACAAATTTCA-A-AATCAGTTCTCATTCTTTGG--C-TATTGA-AACTG--AATCA-TTAC----TCCATGAA--GC-CAAATAAA--Tagttgaatgtatcaatcacctagatgttatttttagcttatctatctttggagaaattacttcaatctatgaagttaatggtctatatgaaaacttttgtttcctttgctatggccctctctctggagctcggaaattggaaataaattataaacct
gi|12 : TGT-------GTAAT-AG-AG-AAACTT---T-----TATTTGGC-GTAC-GA-GTAATGAATGTG-ACAGTG--TTAT------TGAAAATTTT-GCCAACTACAT-A-TAT--AGCT-G--CTCAC--AT-TTGAGAAAA
gi|15 : C-CTT-T-G-TAT---TT-GA-TT-GT-A-TAG-CATAC--C-AACGT----AGA-----A--TCCAT-AA-AC----------A--C--CTTG-TATGA--GAACTTTAT----AAAC-----CTGT-------GTAAT-AG-AG-AAA-AGAGTT-----TATTTGGCTTttctattgatcataactttgttattttactttatc
gi|16 : tcatatTCATG---GTGTGACA-ACTTTCA-ACATTG-AGA--AACACTTTG-CAAACTGC-GAACATA-TGCATT-ATTCAAAACAAGATTCTGTA-------GAGAAA-AA----------TATTTat
gi|17 : tg--G--CG-TTAC----ACAA--AA--ACACAAGTAAA--TGAGAGCAAATGTAGTGTCTGCAAGTC-TGAC--TGTTGAAGA---TGCA-TTCCATTT-T-G-TAT---TT-GA-CT-AT-A-TAG-
gi|19 : -------GAG-AATAA----------TATTTTTCAGTAATTT-GTAATCCTCAAG
gi|2 : TATTCATG---GTGTAGTACACTTTCAGACATTGCGAACAAATA-----------TGC-AA----------TT-ATTCAAAACTAAATTCTGTACTATGTAGAG-AA-AAC---------TATTTT-CAGTAATTC-GTCATCCTCGCGTCTTGC-AATTTT-TTTCCTCCAAATTTCA-G-AATAAGTTCTCATTCTTTGG--C-TATTGA-AGCTG--GG-CG-TTAC----ACAA--AA--ACACAAGTAAA--TGAGAGAAAATGTAA-GTCTGACAGT------TGTATT--------TG-A---CC-GTA-T-A-----------------T-A-CAG-CATA---CCAACACCT-AAGAAAACCA--TTTATAGA-ATCCAT--G--AA--CACCTTG-TATAA--GAACTTTAT----AAAC-----CTGT-------GTAAT-AG-AGAAAA-AA---T-----TATTTGGC-TTAT-GA-GTAATGAATGTG-ACAGTG--TCAT------TG-AA----T-GCTAACTACAT-A-TAT--AGCT-G--TTCAC--AA-CTGAGAAAA
gi|3 : aaTATACATG---GTGTATTACACTTTCAGACATTGCAGACAAACA-TGTGGCAA-CTGTTGAACATA-TTCATT-AT-CAAAACAAGATTCTGTA-------GAG-AA-AA----------TATTTTTCAGTCATTC-GTAATCCTCAAGTCTTGA-AATGTT-TT-----CAAATTTCA---AATCAGTTCTCATTCTTTGG--CTTATTGA-AACTG--G--CGCTTAC----ACAA--AA--A-ACAAGTAAA--TGAGAGAAAAT-TAGTGTCTGC-AGTC-TGACTGTGTTGAAGA---TG-ATTTCC-TTT-TAA-CAT---TT-GAGTT-GT-A-CAG-CATA---C-AACATCTAAAGAAAACCA--TTCAT-AA-ATCCAT--G--AA--T--CTTG-TAT-A--AAA-TTTAT----AA-------CTGT-------GTAAT-AG-AG-AAA-TA---T-----TATTTGGCTTTAT-GA-GTAATGA--GTG-AC---G--TAA--------G-AAATGTT-GCCAACTATATAA-TGTA-AGCTGG--CTCAC--AA-TTGAGAAAAgttgatttatcattaccttgttatttta
gi|4 : -AATGTT-TA----ACAAATTTCAAG-AATCAGTTCT-ATTCTTTG---C-TATTGA-AATTG-----CG-TTAC----ACAA--A----CACAAGTAAA--TGAGAGAAAATGT-GTGTCTGAGAG-C-TGA---TGTTGAAGC---TG-A-TTCA-TTTGT-A-CAT---TT-GA-TT-GTAA-CAGACATA---C-CAAAT-T-AAGAAAACCA--TTCAT-GG-AATCAT--G--AA--TACTTTG-TAAAA--AAC-TTTAT----AAA------CTGT-------GTAAT-AG-AG-AAA-AA---T-----T-TTTGG--TTAT-GA-GT-ATGAATGTG-ACA-TG--TGAT------TG-AAATTTT-GCCAACTA-AT-A-TAT---GCT-G--CTCA---AA-TTGGGAGAA
gi|5 : t-TTCCATTT-T-A-CATATATT-GA-TT-GT-AGCAG--ATA---CCAACACCT-AAGAAA--------TAG-GA-ATTCATTAG--AACAT--ATTGCTATAA--AAA-TTTGTTGAGAGAG-----CCGT-------GTAAT-AG-AG-AAA-AAA--T-----TATTTGGCT--GA-GA-GTAAT-AATGTGGAC-GTG--TTAT------GA-AAATTTT-GCCAATTACAT-A-TATA-GCTT-G--CTCAC--AA--TGAGAAAAattgaattatcataattggttattttaatttatctatcttttaggatggttttcttctgtggttttatgtattctttggtaatgctctgggcccaaaatggaataaaattacttacttatttcttac
gi|6 : AA-TTTAT----AAAC-----CTTT-------GTGAT-AGCAA-AAA-GT---T-----TATCTGAC-TTAT-GA-GCAATGAATGTG-ACAGTG--GTAT------TG-AAA-TTT-GC-----ACAT---TGTACAGCT-G--TTCAT--CA-TTAAAAAAAgttgattattcatactttgtttattttactttatctatcaattctagataatttttcttctatgatttatgtataatgaactttgttctttgcatgccctcttggaaaagcctgaaaggaaaataaattatactta
gi|7 : tgattagagcagacaggccagacacatattttatagggcacccttgaagttgttatataattaagaacttAACTATAT-AATGTA-AGCT-GG-CTCAC--AA-TTGAGAAAAagttgatttaccataacattgttattttactttatccatcttttgcataatcattctattcctatctttacttgccctctgggtcccaaattagaaataaattatatacttacttactat
gi|7 : G--G--CG-TTAC----ACAA--AA---CACAAGTAAA--TG-GAGAAAAT-TAGTGTCTG-AAGTC-TGACTGTGTTGAAGA---TG-A-TTCC-TTT-T-AACAT---TT-GAGTT-GT-A-CAG-CATA---C-AACATCT-AAGAAAACCA--TTCAT-GA-ATCCAT--G--TC--T--CTTG-TATAA--AAC-TTTAT------AC-----CTGT-------GTAAT-AG-AG-AAA-T----T-----TATTTGGCTTCATGGA-GTAATGAtnnnnnnnnnnnnnnnnnnnnnnnnnggcgttacacaaaacacaagtaaatggagaaaattagtgtctgaagtctgactgtgttgaagatgattccttttaacatttgagttgtacagcatacaacatctaagaaaaccattcatgaatccatgtctcttgtataaaactttatacctgtgtaatagagaaatttatttggcttcatggagtaatgattcagtttcaa
gi|8 : aactatataatgtaagctggctcacaattgagaaaatnnnnnnnnnnnnnnnnnnnnnnnnnTAATGAATGTG-TCAGTGGTTAACATGTAGTG-AAATTTTTGCCAACGACAT-A-T----AGCT-G--CTCATTAAA-TTAAttcagtttcaa
gi|9 : tttttaTATTCATGTGTGTGTAGTACACTTTCAGACATTGCAGACAAACAATGTGGCAAACTGC-GAACATAGTTCATTTATTCAAAACAAGATTCTGTA-------GAG-AA-AA----------TATATTTCAGTAATTC-GTAATCCTCAAATATTGA-AATGTT-TT----ACAAATTTCA-G-AATCA-TTCTCATTC-TTGG--C-TATTGA-AACTG--GA-CG-TTAC----ACAA--AA--ACACAAGTAAA--catcaacttaacaaagtcgatttattgatcataacctatgggtctattttacctatctgtaaaatatctgtcttttggataactctctcttttatgactttgttatatcagtcttgcaacatgtattcttggccccaattggaaaaatcagttaatttacttactaccttac
5 sequences could not be aligned to this reference sequence:
Unaligned ( gi|11 ): CATAAACTGTTTGTTATATTTACTTATCTATCATTGGATGCACTTTCTCTGATCTGTGTTATACTTTATGTAATCTCGATTGTATGCCCTCTGGCCCCAAAATTGGAAATAAATTAGCTATACTTACTTACTATATTAC
Unaligned ( gi|13 ): CATAAACTGTTTTGTTATTTTACTTTATCTATCATTGGATGCACTTTCTTATCTTGTATATGTTTATGTATATCTCATTGTATGCCTCTGGCGCCCAAAATTGGAAATAAATTGCACTAACTTACTTACTT
Unaligned ( gi|14 ): CATAACTTTGTTATTTTACTTTATCTATCATTTGGATGGTCTTTCTTCTGTGGTTTATGTATATCTTTGTATGCCCTCTGGGCCCAAAATTGGAAATAAATTACTTACTTACT
Unaligned ( gi|18 ): TCTTGTTTATGTGAAACTCTGTATTCTTTGTATGCCCTCTGGGCCCAAAATTGGAAATTACTTGTCATTTTATTTAAATTATT
Unaligned ( gi|20 ): CCCAAAATTGGAAATAAATTACTTACTTACGCA
Alignments
lowQualScore : 111 1 1111111 1 3333333333 11111 111 22222 1111 11 11 1111 1 2222 11111 11 222222222222 1111 1111111111111 1111111 22222222222 11 11 111111 111 11 11
lowQualScore : 1 444 5 5 5 8 0 8 0 8 0 8888888 1 5 0000000000 6 77 6 77777 444 99 6 6 22222 5 0000 66 888 66 6 2 22 6 33 4444 777 22 5 666 888 5 0 5 0000 5 77777 00 5 1 77 5 5 999999999999 5 66 0000 5555555555555 4444444 4 4 66666666666 44 5 5 5 3 11 1 444444 5 0 0 5 1 1 000 1 99 4 00 66 4
lowQualScore : . ... . . . . . . . . . ....... . . .......... . .. . ..... ... .. . . ..... . .... .. ... .. . . .. . .. .... ... .. . ... ... . . . .... . ..... .. . . .. . . ............ . .. .... ............. ....... . . ........... .. . . . . .. . ...... . . . . . . ... . .. . .. .. .
lowQualScore : 4 000 4 0 6 0 8 0 6 0 8 6666666 4 7 7777777777 7 33 7 33333 333 22 7 7 00000 0 6666 99 999 99 7 5 33 7 88 8888 444 33 0 666 888 0 0 0 6666 0 11111 00 7 4 99 7 7 999999999999 7 99 6666 8888888888888 4444444 4 4 22222222222 66 0 0 0 2 99 0 444444 0 1 1 0 4 9 888 4 99 4 66 11 4
consensus : TATTCATG---GTGTAGTACACTTTCAGACATTGCAGACAAACAATGTGGCAAACTGC-GAACATA-TTCATT-ATTCAAAACAAGATTCTGTA-------GAG-AA-AA----------TATTTTTCAGTAATTC-GTAATCCTCAAGTCTTGA-AATGTT-TT----ACAAATTTCA-G-AATCAGTTCTCATTCTTTGG--C-TATTGA-AACTG--G--CG-TTAC----ACAA--AA--ACACAAGTAAA--TGAGAGAAAATGTAGTGTCTGCAAGTC-TGACTGTGTTGAAGA---TG-A-TTCCATTT-T-A-CAT---TT-GA-TT-GTA----CAG-CATA---C-AACATCT-AAGAAAACCA--TTCAT-GA-ATCCAT---GAACAC-C-TTG-TATAA--AAACTT----TAT----AAAC-----CTGT-------GTAAT-AGAG-AAAA-A---T-----TATTTGGCTTTAT-GA-GTAATGAATGTG-ACAGTG--TNAT------TG-AAATTTT-GCCAACTACAT-A-TATA-AGCT-G--CTCAC--AA-TTGAGAAAA
Reference ( family-6757 ) : TATTCATG---GTGTAGTACACTTTCAGACATTGCAGACAAACAATGTGGCAAACTGC-GAACATA-TTCATT-ATTCAAAACAAGATTCTGTA-------GAG-AA-AA----------TATTTTTCAGTAATTC-GTAATCCTCAAGTCTTGA-AATGTT-TT----ACAAATTTCA-G-AATCAGTTCTCATTCTTTGG--C-TATTGA-AACTG--G--CG-TTAC----ACAA--AA--ACACAAGTAAA--TGAGAGAAAATGTAGTGTCTGCAAGTC-TGACTGTGTTGAAGA---TG-A-TTCCATTT-T-A-CAT---TT-GA-TT-GTA----CAG-CATA---C-AACATCT-AAGAAAACCA--TTCAT-GA-ATCCAT---GAAT-C-C-TTG-TATAA--AAACTT----TAT----AAAC-----CTGT-------GTAAT-AGAG-AAAA-A---T-----TATTTGGCTTTAT-GA-GTAATGAATGTG-ACAGTG--TNAT------TG-AAATTTT-GCCAACTACAT-A-TATA-AGCT-G--CTCAC--AA-TTGAGAAAA
gi|1 : TTCTGTA-------GAG-AA-AAACATATTTAATATTTTTCAGTAATTCTATAATCCTCAAGTCTTGCCAATGTTCTT----ACAA-TTTCA-GCAATCTGTTCTCATTCTTTGGGAC-TATTGATAACTGAAG--CG-TTACTATAGCAA--AACAACA-AAGTAAAATTTAAAGGAAATGTAGTGT-TGCAAGTCCTCACTGTGTTGAAAAGAATG-AATTCCATTT-T-AATAT---TTTGA-CTCGT-----TAG-C-TAAACC-AACA-CT-AAGAAAACCAAATTCAT-AAGATCCATTTCAATT-C-C-TTG-TATAATAAAACTT----TAT----AAACAAATACTGTAACATTTGTAATTAGAA-AAAA-A---AAGAGATATTTGGCT--AT-GAAGTAATGAATGTG-ACAGTGT-TAAT------TG-AAATT------------AT---TAT---GCT-GGCTTCAC--AATTTGAGAAAA
gi|10 : caagtagcagtgcttcaatattatATACATG---GTGTAGTACACTTTCAGACATTGCAGACAAACAATGTGGCAAACTGT-GAACATA-TTCATT-ATTCAAAACAAGATTCTGTA-------GAGAAA-AA----------TATTTTTCAGTAATTC-GTAATCCTCAAGTCTTGA-AATGTT-TT----ACAAATTTCA-A-AATCAGTTCTCATTCTTTGG--C-TATTGA-AACTG--AATCA-TTAC----TCCATGAA--GC-CAAATAAA--Tagttgaatgtatcaatcacctagatgttatttttagcttatctatctttggagaaattacttcaatctatgaagttaatggtctatatgaaaacttttgtttcctttgctatggccctctctctggagctcggaaattggaaataaattataaacct
gi|12 : TGT-------GTAAT-AGAG-AAACTT---T-----TATTTGGC-GTAC-GA-GTAATGAATGTG-ACAGTG--TTAT------TGAAAATTTT-GCCAACTACAT-A-TAT--AGCT-G--CTCAC--AT-TTGAGAAAA
gi|15 : TT-T-G-TAT---TT-GA-TT-GTA----TAG-CATAC--C-AACG--T-A-----------------GA-ATCCAT---AAACAC-C-TTG-TATGA--GAACTT----TAT----AAAC-----CTGT-------GTAAT-AGAG-AAAA-GAGTT-----TATTTGGCTTttctattgatcataactttgttattttactttatc
gi|16 : tcatatccTCATG---GTGTGACA-ACTTTCA-ACATTG-AGA--AACACTTTG-CAAACTGC-GAACATA-TGCATT-ATTCAAAACAAGATTCTGTA-------GAGAAA-AA----------TATTTat
gi|17 : tg--G--CG-TTAC----ACAA--AA--ACACAAGTAAA--TGAGAGCAAATGTAGTGTCTGCAAGTC-TGAC--TGTTGAAGA---TGCA-TTCCATTT-T-G-TAT---TT-GA-CT-ATA----TAG-
gi|19 : -------GAG-AATAA----------TATTTTTCAGTAATTT-GTAATCCTCAAG
gi|2 : TATTCATG---GTGTAGTACACTTTCAGACATTGCGAACAAATA-----------TGC-AA----------TT-ATTCAAAACTAAATTCTGTACTATGTAGAG-AA-AAC---------TATTTT-CAGTAATTC-GTCATCCTCGCGTCTTGC-AATTTT-TTTCCTCCAAATTTCA-G-AATAAGTTCTCATTCTTTGG--C-TATTGA-AGCTG--GG-CG-TTAC----ACAA--AA--ACACAAGTAAA--TGAGAGAAAATGTA---------AGTC-TGAC--------AG----------------T-T-G-TAT---TT-GA-CC-GTATATACAG-CATA---CCAACACCT-AAGAAAACCA--TTTATAGA-ATCCAT---GAACAC-C-TTG-TATAA--GAACTT----TAT----AAAC-----CTGT-------GTAAT-AGAGAAAAA-A---T-----TATTTGGC-TTAT-GA-GTAATGAATGTG-ACAGTG--TCAT------TG-AA----T-GCTAACTACAT-A-TAT--AGCT-G--TTCAC--AA-CTGAGAAAA
gi|3 : aaTATACATG---GTGTATTACACTTTCAGACATTGCAGACAAACA-TGTGGCAA-CTGTTGAACATA-TTCATT-AT-CAAAACAAGATTCTGTA-------GAG-AA-AA----------TATTTTTCAGTCATTC-GTAATCCTCAAGTCTTGA-AATGTT-TT-----CAAATTTCA---AATCAGTTCTCATTCTTTGG--CTTATTGA-AACTG--G--CGCTTAC----ACAA--AA--A-ACAAGTAAA--TGAGAGAAAAT-TAGTGTCTGC-AGTC-TGACTGTGTTGAAGA---TG-A-TTTCCTTT-TAA-CAT---TT-GAGTT-GTA----CAG-CATA---C-AACATCTAAAGAAAACCA--TTCAT-AA-ATCCAT---GAAT---C-TTG-TATAA--AA--TT----TAT----AA-------CTGT-------GTAAT-AGAG-AAAT-A---T-----TATTTGGCTTTAT-GA-GTAATGA--GTG-AC---G--TAA--------G-AAATGTT-GCCAACTATATAA-TGTA-AGCTGG--CTCAC--AA-TTGAGAAAAgttgatttatcattaccttgttatttta
gi|4 : -AATGTT-TA----ACAAATTTCAAG-AATCAGTTCT-ATTCTTTG---C-TATTGA-AATTG-----CG-TTAC----ACAA--A----CACAAGTAAA--TGAGAGAAAATGT-GTGTCTGAGAG-C-TGA---TGTTGAAGC---TG-A-TTC-ATTTGT-A-CAT---TT-GA-TT-GTAA---CAGACATA---C-CAAAT-T-AAGAAAACCA--TTCAT-GG-AATCAT---GAATAC-T-TTG-TA-AA--AAACTT----TAT----AAA------CTGT-------GTAAT-AGAG-AAAA-A---T-----T-TTTGG--TTAT-GA-GT-ATGAATGTG-ACA-TG--TGAT------TG-AAATTTT-GCCAACTA-AT-A-TAT---GCT-G--CTCA---AA-TTGGGAGAA
gi|5 : t-TTCCATTT-T-A-CATATATT-GA-TT-GTAG---CAG--ATA---CCAACACCT-AAGAAA--------TAG-GA-ATTCATTA-GAAC-A-TATTGCTATAA--AAA-TT----TGTTGAGAGAG-----CCGT-------GTAAT-AGAG-AAAA-AA--T-----TATTTGGCT--GA-GA-GTAAT-AATGTGGAC-GTG--TTAT------GA-AAATTTT-GCCAATTACAT-A-TATA-GCTT-G--CTCAC--AA--TGAGAAAAattgaattatcataattggttattttaatttatctatcttttaggatggttttcttctgtggttttatgtattctttggtaatgctctgggcccaaaatggaataaaattacttacttatttcttac
gi|6 : TAA--GAACTTAATTTAT----AAAC-----CTTT-------GTGAT-AGCA-AAAA-GT--T-----TATCTGAC-TTAT-GA-GCAATGAATGTG-ACAGTG--GTAT------TG-AAA-TTT-GC-----ACAT---TGTACAGCT-G--TTCAT--CA-TTAAAAAAAgttgattattcatactttgtttattttactttatctatcaattctagataatttttcttctatgatttatgtataatgaactttgttctttgcatgccctcttggaaaagcctgaaaggaaaataaattatactta
gi|7 : tgattagagcagacaggccagacacatattttatagggcacccttgaagttgttatataatAACTATAT-AATGTA-AGCT-GG-CTCAC--AA-TTGAGAAAAagttgatttaccataacattgttattttactttatccatcttttgcataatcattctattcctatctttacttgccctctgggtcccaaattagaaataaattatatacttacttactat
gi|7 : G--G--CG-TTAC----ACAA--AA---CACAAGTAAA--TG-GAGAAAAT-TAGTGTCTG-AAGTC-TGACTGTGTTGAAGA---TG-A-TTCCTTTT-A-A-CAT---TT-GAGTT-GTA----CAG-CATA---C-AACATCT-AAGAAAACCA--TTCAT-GA-ATCCAT---G--T-CTC-TTG-TAT-A--AAACTT----TAT------AC-----CTGT-------GTAAT-AGAG--AAA-T---T-----TATTTGGCTTCATGGA-GTAATGAtnnnnnnnnnnnnnnnnnnnnnnnnnggcgttacacaaaacacaagtaaatggagaaaattagtgtctgaagtctgactgtgttgaagatgattccttttaacatttgagttgtacagcatacaacatctaagaaaaccattcatgaatccatgtctcttgtataaaactttatacctgtgtaatagagaaatttatttggcttcatggagtaatgattcagtttcaa
gi|8 : aactatataatgtaagctggctcacaattgagaaaatnnnnnnnnnnnnnnnnnnnnnnnnnTAATGAATGTG-TCAGTGGTTAACATGTAGTG-AAATTTTTGCCAACGACAT-A-T----AGCT-G--CTCATTAAA-TTAAttcagtttcaa
gi|9 : tttttaTATTCATGTGTGTGTAGTACACTTTCAGACATTGCAGACAAACAATGTGGCAAACTGC-GAACATAGTTCATTTATTCAAAACAAGATTCTGTA-------GAG-AA-AA----------TATATTTCAGTAATTC-GTAATCCTCAAATATTGA-AATGTT-TT----ACAAATTTCA-G-AATCA-TTCTCATTC-TTGG--C-TATTGA-AACTG--GA-CG-TTAC----ACAA--AA--ACACAAGTAAA--catcaacttaacaaagtcgatttattgatcataacctatgggtctattttacctatctgtaaaatatctgtcttttggataactctctcttttatgactttgttatatcagtcttgcaacatgtattcttggccccaattggaaaaatcagttaatttacttactaccttac
5 sequences could not be aligned to this reference sequence:
Unaligned ( gi|11 ): CATAAACTGTTTGTTATATTTACTTATCTATCATTGGATGCACTTTCTCTGATCTGTGTTATACTTTATGTAATCTCGATTGTATGCCCTCTGGCCCCAAAATTGGAAATAAATTAGCTATACTTACTTACTATATTAC
Unaligned ( gi|13 ): CATAAACTGTTTTGTTATTTTACTTTATCTATCATTGGATGCACTTTCTTATCTTGTATATGTTTATGTATATCTCATTGTATGCCTCTGGCGCCCAAAATTGGAAATAAATTGCACTAACTTACTTACTT
Unaligned ( gi|14 ): CATAACTTTGTTATTTTACTTTATCTATCATTTGGATGGTCTTTCTTCTGTGGTTTATGTATATCTTTGTATGCCCTCTGGGCCCAAAATTGGAAATAAATTACTTACTTACT
Unaligned ( gi|18 ): TCTTGTTTATGTGAAACTCTGTATTCTTTGTATGCCCTCTGGGCCCAAAATTGGAAATTACTTGTCATTTTATTTAAATTATT
Unaligned ( gi|20 ): CCCAAAATTGGAAATAAATTACTTACTTACGCA
Alignments
lowQualScore : 111 1 1111111 1 3333333333 11111 111 22222 1111 11 11 1111 1 2222 11111 11 11111 1111 1111111111111 1111111 22222222222 11 11 111111 111 11 11
lowQualScore : 1 444 5 5 5 8 0 8 0 8 0 8888888 1 5 0000000000 6 77 6 77777 444 99 6 6 22222 5 0000 66 888 66 6 2 22 6 33 4444 777 22 5 666 888 5 0 5 0000 5 77777 00 5 1 77 5 5 11111 11 5 66 0000 5555555555555 4444444 4 4 66666666666 44 5 5 5 3 11 1 444444 5 0 0 5 1 1 000 1 99 4 00 66 4
lowQualScore : . ... . . . . . . . . . ....... . . .......... . .. . ..... ... .. . . ..... . .... .. ... .. . . .. . .. .... ... .. . ... ... . . . .... . ..... .. . . .. . . ..... .. . .. .... ............. ....... . . ........... .. . . . . .. . ...... . . . . . . ... . .. . .. .. .
lowQualScore : 4 000 4 0 6 0 8 0 6 0 8 6666666 4 7 7777777777 7 33 7 33333 333 22 7 7 00000 0 6666 99 999 99 7 5 33 7 88 8888 444 33 0 666 888 0 0 0 6666 0 11111 00 7 4 99 7 7 66666 99 7 99 6666 8888888888888 4444444 4 4 22222222222 66 0 0 0 2 99 0 444444 0 1 1 0 4 9 888 4 99 4 66 11 4
consensus : TATTCATG---GTGTAGTACACTTTCAGACATTGCAGACAAACAATGTGGCAAACTGC-GAACATA-TTCATT-ATTCAAAACAAGATTCTGTA-------GAG-AA-AA----------TATTTTTCAGTAATTC-GTAATCCTCAAGTCTTGA-AATGTT-TT----ACAAATTTCA-G-AATCAGTTCTCATTCTTTGG--C-TATTGA-AACTG--G--CG-TTAC----ACAA--AA--ACACAAGTAAA--TGAGAGAAAATGTAGTGTCTGCAAGTC-TGACTGTGTTGAAGA---TG-A-TTCCATTT-T-A-CAT---TT-GA-TT-GTA----CAG-CATA---C-AACATCT-AAGAAAACCA--TTCAT-GA-ATCCAT--G--AACACCTTG-TATAA--AAACTT----TAT----AAAC-----CTGT-------GTAAT-AGAG-AAAA-A---T-----TATTTGGCTTTAT-GA-GTAATGAATGTG-ACAGTG--TNAT------TG-AAATTTT-GCCAACTACAT-A-TATA-AGCT-G--CTCAC--AA-TTGAGAAAA
Reference ( family-6757 ) : TATTCATG---GTGTAGTACACTTTCAGACATTGCAGACAAACAATGTGGCAAACTGC-GAACATA-TTCATT-ATTCAAAACAAGATTCTGTA-------GAG-AA-AA----------TATTTTTCAGTAATTC-GTAATCCTCAAGTCTTGA-AATGTT-TT----ACAAATTTCA-G-AATCAGTTCTCATTCTTTGG--C-TATTGA-AACTG--G--CG-TTAC----ACAA--AA--ACACAAGTAAA--TGAGAGAAAATGTAGTGTCTGCAAGTC-TGACTGTGTTGAAGA---TG-A-TTCCATTT-T-A-CAT---TT-GA-TT-GTA----CAG-CATA---C-AACATCT-AAGAAAACCA--TTCAT-GA-ATCCAT--G--AACACCTTG-TATAA--AAACTT----TAT----AAAC-----CTGT-------GTAAT-AGAG-AAAA-A---T-----TATTTGGCTTTAT-GA-GTAATGAATGTG-ACAGTG--TNAT------TG-AAATTTT-GCCAACTACAT-A-TATA-AGCT-G--CTCAC--AA-TTGAGAAAA
gi|1 : TTCTGTA-------GAG-AA-AAACATATTTAATATTTTTCAGTAATTCTATAATCCTCAAGTCTTGCCAATGTTCTT----ACAA-TTTCA-GCAATCTGTTCTCATTCTTTGGGAC-TATTGATAACTGAAG--CG-TTACTATAGCAA--AACAACA-AAGTAAAATTTAAAGGAAATGTAGTGT-TGCAAGTCCTCACTGTGTTGAAAAGAATG-AATTCCATTT-T-AATAT---TTTGA-CTCGT-----TAG-C-TAAACC-AACA-CT-AAGAAAACCAAATTCAT-AAGATCCAT--TTCAATTCCTTG-TATAATAAAACTT----TAT----AAACAAATACTGTAACATTTGTAATTAGAA-AAAA-A---AAGAGATATTTGGCT--AT-GAAGTAATGAATGTG-ACAGTGT-TAAT------TG-AAATT------------AT---TAT---GCT-GGCTTCAC--AATTTGAGAAAA
gi|10 : caagtagcagtgcttcaatattatATACATG---GTGTAGTACACTTTCAGACATTGCAGACAAACAATGTGGCAAACTGT-GAACATA-TTCATT-ATTCAAAACAAGATTCTGTA-------GAGAAA-AA----------TATTTTTCAGTAATTC-GTAATCCTCAAGTCTTGA-AATGTT-TT----ACAAATTTCA-A-AATCAGTTCTCATTCTTTGG--C-TATTGA-AACTG--AATCA-TTAC----TCCATGAA--GC-CAAATAAA--Tagttgaatgtatcaatcacctagatgttatttttagcttatctatctttggagaaattacttcaatctatgaagttaatggtctatatgaaaacttttgtttcctttgctatggccctctctctggagctcggaaattggaaataaattataaacct
gi|12 : TGT-------GTAAT-AGAG-AAACTT---T-----TATTTGGC-GTAC-GA-GTAATGAATGTG-ACAGTG--TTAT------TGAAAATTTT-GCCAACTACAT-A-TAT--AGCT-G--CTCAC--AT-TTGAGAAAA
gi|15 : TT-T-G-TAT---TT-GA-TT-GTA----TAG-CATAC--C-AACG--T-A-----------------GA-ATCCAT--A--AACACCTTG-TATGA--GAACTT----TAT----AAAC-----CTGT-------GTAAT-AGAG-AAAA-GAGTT-----TATTTGGCTTttctattgatcataactttgttattttactttatc
gi|16 : tcatatccTCATG---GTGTGACA-ACTTTCA-ACATTG-AGA--AACACTTTG-CAAACTGC-GAACATA-TGCATT-ATTCAAAACAAGATTCTGTA-------GAGAAA-AA----------TATTTat
gi|17 : tg--G--CG-TTAC----ACAA--AA--ACACAAGTAAA--TGAGAGCAAATGTAGTGTCTGCAAGTC-TGAC--TGTTGAAGA---TGCA-TTCCATTT-T-G-TAT---TT-GA-CT-ATA----TAG-
gi|19 : -------GAG-AATAA----------TATTTTTCAGTAATTT-GTAATCCTCAAG
gi|2 : TATTCATG---GTGTAGTACACTTTCAGACATTGCGAACAAATA-----------TGC-AA----------TT-ATTCAAAACTAAATTCTGTACTATGTAGAG-AA-AAC---------TATTTT-CAGTAATTC-GTCATCCTCGCGTCTTGC-AATTTT-TTTCCTCCAAATTTCA-G-AATAAGTTCTCATTCTTTGG--C-TATTGA-AGCTG--GG-CG-TTAC----ACAA--AA--ACACAAGTAAA--TGAGAGAAAATGTA---------AGTC-TGAC--------AG----------------T-T-G-TAT---TT-GA-CC-GTATATACAG-CATA---CCAACACCT-AAGAAAACCA--TTTATAGA-ATCCAT--G--AACACCTTG-TATAA--GAACTT----TAT----AAAC-----CTGT-------GTAAT-AGAGAAAAA-A---T-----TATTTGGC-TTAT-GA-GTAATGAATGTG-ACAGTG--TCAT------TG-AA----T-GCTAACTACAT-A-TAT--AGCT-G--TTCAC--AA-CTGAGAAAA
gi|3 : aaTATACATG---GTGTATTACACTTTCAGACATTGCAGACAAACA-TGTGGCAA-CTGTTGAACATA-TTCATT-AT-CAAAACAAGATTCTGTA-------GAG-AA-AA----------TATTTTTCAGTCATTC-GTAATCCTCAAGTCTTGA-AATGTT-TT-----CAAATTTCA---AATCAGTTCTCATTCTTTGG--CTTATTGA-AACTG--G--CGCTTAC----ACAA--AA--A-ACAAGTAAA--TGAGAGAAAAT-TAGTGTCTGC-AGTC-TGACTGTGTTGAAGA---TG-A-TTTCCTTT-TAA-CAT---TT-GAGTT-GTA----CAG-CATA---C-AACATCTAAAGAAAACCA--TTCAT-AA-ATCCAT--G--A--ATCTTG-TATAA--AA--TT----TAT----AA-------CTGT-------GTAAT-AGAG-AAAT-A---T-----TATTTGGCTTTAT-GA-GTAATGA--GTG-AC---G--TAA--------G-AAATGTT-GCCAACTATATAA-TGTA-AGCTGG--CTCAC--AA-TTGAGAAAAgttgatttatcattaccttgttatttta
gi|4 : -AATGTT-TA----ACAAATTTCAAG-AATCAGTTCT-ATTCTTTG---C-TATTGA-AATTG-----CG-TTAC----ACAA--A----CACAAGTAAA--TGAGAGAAAATGT-GTGTCTGAGAG-C-TGA---TGTTGAAGC---TG-A-TTC-ATTTGT-A-CAT---TT-GA-TT-GTAA---CAGACATA---C-CAAAT-T-AAGAAAACCA--TTCAT-GG-AATCAT--G--AATACTTTG-TA-AA--AAACTT----TAT----AAA------CTGT-------GTAAT-AGAG-AAAA-A---T-----T-TTTGG--TTAT-GA-GT-ATGAATGTG-ACA-TG--TGAT------TG-AAATTTT-GCCAACTA-AT-A-TAT---GCT-G--CTCA---AA-TTGGGAGAA
gi|5 : t-TTCCATTT-T-A-CATATATT-GA-TT-GTAG---CAG--ATA---CCAACACCT-AAGAAA--------TAG-GA-ATTCATTAG--AACATATTGCTATAA--AAA-TT----TGTTGAGAGAG-----CCGT-------GTAAT-AGAG-AAAA-AA--T-----TATTTGGCT--GA-GA-GTAAT-AATGTGGAC-GTG--TTAT------GA-AAATTTT-GCCAATTACAT-A-TATA-GCTT-G--CTCAC--AA--TGAGAAAAattgaattatcataattggttattttaatttatctatcttttaggatggttttcttctgtggttttatgtattctttggtaatgctctgggcccaaaatggaataaaattacttacttatttcttac
gi|6 : TAA--GAACTTAATTTAT----AAAC-----CTTT-------GTGAT-AGCA-AAAA-GT--T-----TATCTGAC-TTAT-GA-GCAATGAATGTG-ACAGTG--GTAT------TG-AAA-TTT-GC-----ACAT---TGTACAGCT-G--TTCAT--CA-TTAAAAAAAgttgattattcatactttgtttattttactttatctatcaattctagataatttttcttctatgatttatgtataatgaactttgttctttgcatgccctcttggaaaagcctgaaaggaaaataaattatactta
gi|7 : tgattagagcagacaggccagacacatattttatagggcacccttgaagttgttatataatAACTATAT-AATGTA-AGCT-GG-CTCAC--AA-TTGAGAAAAagttgatttaccataacattgttattttactttatccatcttttgcataatcattctattcctatctttacttgccctctgggtcccaaattagaaataaattatatacttacttactat
gi|7 : G--G--CG-TTAC----ACAA--AA---CACAAGTAAA--TG-GAGAAAAT-TAGTGTCTG-AAGTC-TGACTGTGTTGAAGA---TG-A-TTCCTTTT-A-A-CAT---TT-GAGTT-GTA----CAG-CATA---C-AACATCT-AAGAAAACCA--TTCAT-GA-ATCCAT--G----TCTCTTG-TAT-A--AAACTT----TAT------AC-----CTGT-------GTAAT-AGAG--AAA-T---T-----TATTTGGCTTCATGGA-GTAATGAtnnnnnnnnnnnnnnnnnnnnnnnnnggcgttacacaaaacacaagtaaatggagaaaattagtgtctgaagtctgactgtgttgaagatgattccttttaacatttgagttgtacagcatacaacatctaagaaaaccattcatgaatccatgtctcttgtataaaactttatacctgtgtaatagagaaatttatttggcttcatggagtaatgattcagtttcaa
gi|8 : aactatataatgtaagctggctcacaattgagaaaatnnnnnnnnnnnnnnnnnnnnnnnnnTAATGAATGTG-TCAGTGGTTAACATGTAGTG-AAATTTTTGCCAACGACAT-A-T----AGCT-G--CTCATTAAA-TTAAttcagtttcaa
gi|9 : tttttaTATTCATGTGTGTGTAGTACACTTTCAGACATTGCAGACAAACAATGTGGCAAACTGC-GAACATAGTTCATTTATTCAAAACAAGATTCTGTA-------GAG-AA-AA----------TATATTTCAGTAATTC-GTAATCCTCAAATATTGA-AATGTT-TT----ACAAATTTCA-G-AATCA-TTCTCATTC-TTGG--C-TATTGA-AACTG--GA-CG-TTAC----ACAA--AA--ACACAAGTAAA--catcaacttaacaaagtcgatttattgatcataacctatgggtctattttacctatctgtaaaatatctgtcttttggataactctctcttttatgactttgttatatcagtcttgcaacatgtattcttggccccaattggaaaaatcagttaatttacttactaccttac
5 sequences could not be aligned to this reference sequence:
Unaligned ( gi|11 ): CATAAACTGTTTGTTATATTTACTTATCTATCATTGGATGCACTTTCTCTGATCTGTGTTATACTTTATGTAATCTCGATTGTATGCCCTCTGGCCCCAAAATTGGAAATAAATTAGCTATACTTACTTACTATATTAC
Unaligned ( gi|13 ): CATAAACTGTTTTGTTATTTTACTTTATCTATCATTGGATGCACTTTCTTATCTTGTATATGTTTATGTATATCTCATTGTATGCCTCTGGCGCCCAAAATTGGAAATAAATTGCACTAACTTACTTACTT
Unaligned ( gi|14 ): CATAACTTTGTTATTTTACTTTATCTATCATTTGGATGGTCTTTCTTCTGTGGTTTATGTATATCTTTGTATGCCCTCTGGGCCCAAAATTGGAAATAAATTACTTACTTACT
Unaligned ( gi|18 ): TCTTGTTTATGTGAAACTCTGTATTCTTTGTATGCCCTCTGGGCCCAAAATTGGAAATTACTTGTCATTTTATTTAAATTATT
Unaligned ( gi|20 ): CCCAAAATTGGAAATAAATTACTTACTTACGCA
Alignments
lowQualScore : 111 1 1111111 1 3333333333 11111 111 22222 1111 11 11 1111 1 2222 11111 11 11111 1111 1111111111111 1111111 22222222222 11 11 111111 111 11 11
lowQualScore : 1 444 5 5 5 8 0 8 0 8 0 8888888 1 5 0000000000 6 77 6 77777 444 99 6 6 22222 5 0000 66 888 66 6 2 22 6 33 4444 777 22 5 666 888 5 0 5 0000 5 77777 00 5 1 77 5 5 11111 11 5 66 0000 5555555555555 4444444 4 4 66666666666 44 5 5 5 3 11 1 444444 5 0 0 5 1 1 000 1 99 4 00 66 4
lowQualScore : . ... . . . . . . . . . ....... . . .......... . .. . ..... ... .. . . ..... . .... .. ... .. . . .. . .. .... ... .. . ... ... . . . .... . ..... .. . . .. . . ..... .. . .. .... ............. ....... . . ........... .. . . . . .. . ...... . . . . . . ... . .. . .. .. .
lowQualScore : 4 000 4 0 6 0 8 0 6 0 8 6666666 4 7 7777777777 7 33 7 33333 333 22 7 7 00000 0 6666 99 999 99 7 5 33 7 88 8888 444 33 0 666 888 0 0 0 6666 0 11111 00 7 4 99 7 7 66666 99 7 99 6666 8888888888888 4444444 4 4 22222222222 66 0 0 0 2 99 0 444444 0 1 1 0 4 9 888 4 99 4 66 11 4
consensus : TATTCATG---GTGTAGTACACTTTCAGACATTGCAGACAAACAATGTGGCAAACTGC-GAACATA-TTCATT-ATTCAAAACAAGATTCTGTA-------GAG-AA-AA----------TATTTTTCAGTAATTC-GTAATCCTCAAGTCTTGA-AATGTT-TT----ACAAATTTCA-G-AATCAGTTCTCATTCTTTGG--C-TATTGA-AACTG--G--CG-TTAC----ACAA--AA--ACACAAGTAAA--TGAGAGAAAATGTAGTGTCTGCAAGTC-TGACTGTGTTGAAGA---TG-A-TTCCATTT-T-A-CAT---TT-GA-TT-GTA----CAG-CATA---C-AACATCT-AAGAAAACCA--TTCAT-GA-ATCCAT--G--AACACCTTG-TATAA--AAACTT----TAT----AAAC-----CTGT-------GTAAT-AGAG-AAAA-A---T-----TATTTGGCTTTAT-GA-GTAATGAATGTG-ACAGTG--TNAT------TG-AAATTTT-GCCAACTACAT-A-TATA-AGCT-G--CTCAC--AA-TTGAGAAAA
Reference ( family-6757 ) : TATTCATG---GTGTAGTACACTTTCAGACATTGCAGACAAACAATGTGGCAAACTGC-GAACATA-TTCATT-ATTCAAAACAAGATTCTGTA-------GAG-AA-AA----------TATTTTTCAGTAATTC-GTAATCCTCAAGTCTTGA-AATGTT-TT----ACAAATTTCA-G-AATCAGTTCTCATTCTTTGG--C-TATTGA-AACTG--G--CG-TTAC----ACAA--AA--ACACAAGTAAA--TGAGAGAAAATGTAGTGTCTGCAAGTC-TGACTGTGTTGAAGA---TG-A-TTCCATTT-T-A-CAT---TT-GA-TT-GTA----CAG-CATA---C-AACATCT-AAGAAAACCA--TTCAT-GA-ATCCAT--G--AACACCTTG-TATAA--AAACTT----TAT----AAAC-----CTGT-------GTAAT-AGAG-AAAA-A---T-----TATTTGGCTTTAT-GA-GTAATGAATGTG-ACAGTG--TNAT------TG-AAATTTT-GCCAACTACAT-A-TATA-AGCT-G--CTCAC--AA-TTGAGAAAA
gi|1 : TTCTGTA-------GAG-AA-AAACATATTTAATATTTTTCAGTAATTCTATAATCCTCAAGTCTTGCCAATGTTCTT----ACAA-TTTCA-GCAATCTGTTCTCATTCTTTGGGAC-TATTGATAACTGAAG--CG-TTACTATAGCAA--AACAACA-AAGTAAAATTTAAAGGAAATGTAGTGT-TGCAAGTCCTCACTGTGTTGAAAAGAATG-AATTCCATTT-T-AATAT---TTTGA-CTCGT-----TAG-C-TAAACC-AACA-CT-AAGAAAACCAAATTCAT-AAGATCCAT--TTCAATTCCTTG-TATAATAAAACTT----TAT----AAACAAATACTGTAACATTTGTAATTAGAA-AAAA-A---AAGAGATATTTGGCT--AT-GAAGTAATGAATGTG-ACAGTGT-TAAT------TG-AAATT------------AT---TAT---GCT-GGCTTCAC--AATTTGAGAAAA
gi|10 : caagtagcagtgcttcaatattatATACATG---GTGTAGTACACTTTCAGACATTGCAGACAAACAATGTGGCAAACTGT-GAACATA-TTCATT-ATTCAAAACAAGATTCTGTA-------GAGAAA-AA----------TATTTTTCAGTAATTC-GTAATCCTCAAGTCTTGA-AATGTT-TT----ACAAATTTCA-A-AATCAGTTCTCATTCTTTGG--C-TATTGA-AACTG--AATCA-TTAC----TCCATGAA--GC-CAAATAAA--Tagttgaatgtatcaatcacctagatgttatttttagcttatctatctttggagaaattacttcaatctatgaagttaatggtctatatgaaaacttttgtttcctttgctatggccctctctctggagctcggaaattggaaataaattataaacct
gi|12 : TGT-------GTAAT-AGAG-AAACTT---T-----TATTTGGC-GTAC-GA-GTAATGAATGTG-ACAGTG--TTAT------TGAAAATTTT-GCCAACTACAT-A-TAT--AGCT-G--CTCAC--AT-TTGAGAAAA
gi|15 : TT-T-G-TAT---TT-GA-TT-GTA----TAG-CATAC--C-AACG--T-A-----------------GA-ATCCAT--A--AACACCTTG-TATGA--GAACTT----TAT----AAAC-----CTGT-------GTAAT-AGAG-AAAA-GAGTT-----TATTTGGCTTttctattgatcataactttgttattttactttatc
gi|16 : tcatatccTCATG---GTGTGACA-ACTTTCA-ACATTG-AGA--AACACTTTG-CAAACTGC-GAACATA-TGCATT-ATTCAAAACAAGATTCTGTA-------GAGAAA-AA----------TATTTat
gi|17 : tg--G--CG-TTAC----ACAA--AA--ACACAAGTAAA--TGAGAGCAAATGTAGTGTCTGCAAGTC-TGAC--TGTTGAAGA---TGCA-TTCCATTT-T-G-TAT---TT-GA-CT-ATA----TAG-
gi|19 : -------GAG-AATAA----------TATTTTTCAGTAATTT-GTAATCCTCAAG
gi|2 : TATTCATG---GTGTAGTACACTTTCAGACATTGCGAACAAATA-----------TGC-AA----------TT-ATTCAAAACTAAATTCTGTACTATGTAGAG-AA-AAC---------TATTTT-CAGTAATTC-GTCATCCTCGCGTCTTGC-AATTTT-TTTCCTCCAAATTTCA-G-AATAAGTTCTCATTCTTTGG--C-TATTGA-AGCTG--GG-CG-TTAC----ACAA--AA--ACACAAGTAAA--TGAGAGAAAATGTA---------AGTC-TGAC--------AG----------------T-T-G-TAT---TT-GA-CC-GTATATACAG-CATA---CCAACACCT-AAGAAAACCA--TTTATAGA-ATCCAT--G--AACACCTTG-TATAA--GAACTT----TAT----AAAC-----CTGT-------GTAAT-AGAGAAAAA-A---T-----TATTTGGC-TTAT-GA-GTAATGAATGTG-ACAGTG--TCAT------TG-AA----T-GCTAACTACAT-A-TAT--AGCT-G--TTCAC--AA-CTGAGAAAA
gi|3 : aaTATACATG---GTGTATTACACTTTCAGACATTGCAGACAAACA-TGTGGCAA-CTGTTGAACATA-TTCATT-AT-CAAAACAAGATTCTGTA-------GAG-AA-AA----------TATTTTTCAGTCATTC-GTAATCCTCAAGTCTTGA-AATGTT-TT-----CAAATTTCA---AATCAGTTCTCATTCTTTGG--CTTATTGA-AACTG--G--CGCTTAC----ACAA--AA--A-ACAAGTAAA--TGAGAGAAAAT-TAGTGTCTGC-AGTC-TGACTGTGTTGAAGA---TG-A-TTTCCTTT-TAA-CAT---TT-GAGTT-GTA----CAG-CATA---C-AACATCTAAAGAAAACCA--TTCAT-AA-ATCCAT--G--A--ATCTTG-TATAA--AA--TT----TAT----AA-------CTGT-------GTAAT-AGAG-AAAT-A---T-----TATTTGGCTTTAT-GA-GTAATGA--GTG-AC---G--TAA--------G-AAATGTT-GCCAACTATATAA-TGTA-AGCTGG--CTCAC--AA-TTGAGAAAAgttgatttatcattaccttgttatttta
gi|4 : -AATGTT-TA----ACAAATTTCAAG-AATCAGTTCT-ATTCTTTG---C-TATTGA-AATTG-----CG-TTAC----ACAA--A----CACAAGTAAA--TGAGAGAAAATGT-GTGTCTGAGAG-C-TGA---TGTTGAAGC---TG-A-TTC-ATTTGT-A-CAT---TT-GA-TT-GTAA---CAGACATA---C-CAAAT-T-AAGAAAACCA--TTCAT-GG-AATCAT--G--AATACTTTG-TA-AA--AAACTT----TAT----AAA------CTGT-------GTAAT-AGAG-AAAA-A---T-----T-TTTGG--TTAT-GA-GT-ATGAATGTG-ACA-TG--TGAT------TG-AAATTTT-GCCAACTA-AT-A-TAT---GCT-G--CTCA---AA-TTGGGAGAA
gi|5 : t-TTCCATTT-T-A-CATATATT-GA-TT-GTAG---CAG--ATA---CCAACACCT-AAGAAA--------TAG-GA-ATTCATTAG--AACATATTGCTATAA--AAA-TT----TGTTGAGAGAG-----CCGT-------GTAAT-AGAG-AAAA-AA--T-----TATTTGGCT--GA-GA-GTAAT-AATGTGGAC-GTG--TTAT------GA-AAATTTT-GCCAATTACAT-A-TATA-GCTT-G--CTCAC--AA--TGAGAAAAattgaattatcataattggttattttaatttatctatcttttaggatggttttcttctgtggttttatgtattctttggtaatgctctgggcccaaaatggaataaaattacttacttatttcttac
gi|6 : TAA--GAACTTAATTTAT----AAAC-----CTTT-------GTGAT-AGCA-AAAA-GT--T-----TATCTGAC-TTAT-GA-GCAATGAATGTG-ACAGTG--GTAT------TG-AAA-TTT-GC-----ACAT---TGTACAGCT-G--TTCAT--CA-TTAAAAAAAgttgattattcatactttgtttattttactttatctatcaattctagataatttttcttctatgatttatgtataatgaactttgttctttgcatgccctcttggaaaagcctgaaaggaaaataaattatactta
gi|7 : tgattagagcagacaggccagacacatattttatagggcacccttgaagttgttatataatAACTATAT-AATGTA-AGCT-GG-CTCAC--AA-TTGAGAAAAagttgatttaccataacattgttattttactttatccatcttttgcataatcattctattcctatctttacttgccctctgggtcccaaattagaaataaattatatacttacttactat
gi|7 : G--G--CG-TTAC----ACAA--AA---CACAAGTAAA--TG-GAGAAAAT-TAGTGTCTG-AAGTC-TGACTGTGTTGAAGA---TG-A-TTCCTTTT-A-A-CAT---TT-GAGTT-GTA----CAG-CATA---C-AACATCT-AAGAAAACCA--TTCAT-GA-ATCCAT--G----TCTCTTG-TAT-A--AAACTT----TAT------AC-----CTGT-------GTAAT-AGAG--AAA-T---T-----TATTTGGCTTCATGGA-GTAATGAtnnnnnnnnnnnnnnnnnnnnnnnnnggcgttacacaaaacacaagtaaatggagaaaattagtgtctgaagtctgactgtgttgaagatgattccttttaacatttgagttgtacagcatacaacatctaagaaaaccattcatgaatccatgtctcttgtataaaactttatacctgtgtaatagagaaatttatttggcttcatggagtaatgattcagtttcaa
gi|8 : aactatataatgtaagctggctcacaattgagaaaatnnnnnnnnnnnnnnnnnnnnnnnnnTAATGAATGTG-TCAGTGGTTAACATGTAGTG-AAATTTTTGCCAACGACAT-A-T----AGCT-G--CTCATTAAA-TTAAttcagtttcaa
gi|9 : tttttaTATTCATGTGTGTGTAGTACACTTTCAGACATTGCAGACAAACAATGTGGCAAACTGC-GAACATAGTTCATTTATTCAAAACAAGATTCTGTA-------GAG-AA-AA----------TATATTTCAGTAATTC-GTAATCCTCAAATATTGA-AATGTT-TT----ACAAATTTCA-G-AATCA-TTCTCATTC-TTGG--C-TATTGA-AACTG--GA-CG-TTAC----ACAA--AA--ACACAAGTAAA--catcaacttaacaaagtcgatttattgatcataacctatgggtctattttacctatctgtaaaatatctgtcttttggataactctctcttttatgactttgttatatcagtcttgcaacatgtattcttggccccaattggaaaaatcagttaatttacttactaccttac
blockSeqs : T TGT C G A T G T CTATGTA A T C . A . TCCTC AG . T . AAT C . TG G . G C CA . TG A CA CA G AA ATA . G . TATA A CC CC A A . A . TAG AC C . AATT TGAGAGAG . . A GAGTT TT G . G A GT T ATGTAG A T C C AA A AC G G TA .
blockSeqs : T . A G A . . . . A . . . C . A A . . . GG . . . A . G C AG . TG A A CC . G . . G . A . CC TC . A . . . A AC . . . AAAC . . . TTT TT . . . A . C . . . T C AA A A . . . .
blockSeqs : A . . . . . . . . . . . . A . A G . . . GA . . . A . G C C . . C A CA . G . . . . G . CC CC . A . . . G AT . . . AAAC . . . AAT TT . . . A . A . . . C T A G A . . . .
blockSeqs : T . . . . . . . . . . . . A . A G . . . G . . . A . . C A . . A A CT . G . . . . . . C TC . A . . . G AC . . . AAAC . . . GTT G . . . A . G . . . C C A A A . . . .
blockSeqs : . . . . . . . . . . . G . . . A . . . . . . . . A . A . . . . . . C T . . . . . G T . . . AAA . . . AT T . . . A . T . . . C C A A . . . . .
blockSeqs : . . . . G . . . . . . . A . . . . . . C . . . . . . G . . . . AA . . . AT T . . . . . T . . . C T A G . . . . .
blockSeqs : . . . . . . . A . . . . . . . . AC . . . AT T . . . . . A . . . . C A G . . . . .
blockSeqs : . . . TT T . . . . . . . .
blockSeqCons : ********** A* G** ** G**** **** A** ** A* ** A*** A** G** CC*** CC ** G**** ** AAAC********* ******* NT********* ** A** **
originalCons : TATTCATG---GTGTAGTACACTTTCAGACATTGCAGACAAACAATGTGGCAAACTGC-GAACATA-TTCATT-ATTCAAAACAAGATTCTGTA-------GAG-AA-AA----------TATTTTTCAGTAATTC-GTAATCCTCAAGTCTTGA-AATGTT-TT----ACAAATTTCA-G-AATCAGTTCTCATTCTTTGG--C-TATTGA-AACTG--G--CG-TTAC----ACAA--AA--ACACAAGTAAA--TGAGAGAAAATGTAGTGTCTGCAAGTC-TGACTGTGTTGAAGA---TG-A-TTCCATTT-T-A-CAT---TT-GA-TT-GTA----CAG-CATA---C-AACATCT-AAGAAAACCA--TTCAT-GA-ATCCAT--G--AACACCTTG-TATAA--AAACTT----TAT----AAAC-----CTGT-------GTAAT-AGAG-AAAA-A---T-----TATTTGGCTTTAT-GA-GTAATGAATGTG-ACAGTG--TNAT------TG-AAATTTT-GCCAACTACAT-A-TATA-AGCT-G--CTCAC--AA-TTGAGAAAA
finalCons : TATTCATG---GTGTAGTACACTTTCAGACATTGCAGACAAACAATGTGGCAAACTGC-GAACATA-TTCATT-ATTCAAAACAAGATTCTGTA-------GAG-AA-AA----------TATTTTTCAGTAATTC-GTAATCCTCAAGTCTTGA-AATGTT-TT----ACAAATTTCAG--AATCAGTTCTCATTCTTTGG--C-TATTGA-AACTGG----CG-TTAC----ACAA--AAA--CACAAGTAAA--TGAGAGAAAATGTAGTGTCTGA-AGTC-TGAC--TGTTGAAGA---TGA--TTCCATTT-TG--CAT---TT-GA-TT-GTA----CAG-CATACC---AACACCT-AAGAAAACCA--TTCAT-GA-ATCCATG----AACACCTTG-TATAA--AAACTT----TATAAAC---------CTGT-------GTAAT-AGAG-AAAANT---------TATTTGGCTTTAT-GA-GTAATGAATGTG-ACAGTG--TNAT------TG-AAATTTT-GCCAACTACATA--TATA-AGCT-G--CTCAC--AA-TTGAGAAAA
5 sequences could not be aligned to this reference sequence:
Unaligned ( gi|11 ): CATAAACTGTTTGTTATATTTACTTATCTATCATTGGATGCACTTTCTCTGATCTGTGTTATACTTTATGTAATCTCGATTGTATGCCCTCTGGCCCCAAAATTGGAAATAAATTAGCTATACTTACTTACTATATTAC
Unaligned ( gi|13 ): CATAAACTGTTTTGTTATTTTACTTTATCTATCATTGGATGCACTTTCTTATCTTGTATATGTTTATGTATATCTCATTGTATGCCTCTGGCGCCCAAAATTGGAAATAAATTGCACTAACTTACTTACTT
Unaligned ( gi|14 ): CATAACTTTGTTATTTTACTTTATCTATCATTTGGATGGTCTTTCTTCTGTGGTTTATGTATATCTTTGTATGCCCTCTGGGCCCAAAATTGGAAATAAATTACTTACTTACT
Unaligned ( gi|18 ): TCTTGTTTATGTGAAACTCTGTATTCTTTGTATGCCCTCTGGGCCCAAAATTGGAAATTACTTGTCATTTTATTTAAATTATT
Unaligned ( gi|20 ): CCCAAAATTGGAAATAAATTACTTACTTACGCA
Alignments
lowQualScore : 111 1 1111111 1 3333333333 11111 111 22222 1111 1 11 1111 111 1 2222 11 11111 1111 1111111111111 1111111 22222222222 11 11 111111 111 11 11
lowQualScore : 1 444 5 5 5 8 0 8 0 8 0 8888888 1 5 0000000000 6 77 6 77777 444 99 6 6 22222 5 0000 66 888 66 6 2 3 6 88 99 4444 777 22 5 000 888 5 0 5 0000 777 4 11 5 1 77 5 5 11111 11 5 66 0000 5555555555555 4444444 4 4 4 22222222222 44 5 5 5 3 11 1 444444 5 0 0 5 1 1 000 1 99 4 00 66 4
lowQualScore : . ... . . . . . . . . . ....... . . .......... . .. . ..... ... .. . . ..... . .... .. ... .. . . . . .. .. .... ... .. . ... ... . . . .... ... . .. . . .. . . ..... .. . .. .... ............. ....... . . . ........... .. . . . . .. . ...... . . . . . . ... . .. . .. .. .
lowQualScore : 4 000 4 0 6 0 8 0 6 0 8 6666666 4 7 7777777777 7 33 7 33333 333 22 7 7 00000 0 6666 99 999 99 7 5 3 7 33 22 8888 444 33 0 000 888 0 0 0 6666 999 3 99 7 4 99 7 7 66666 99 7 99 6666 8888888888888 4444444 4 4 4 77777777777 66 0 0 0 2 99 0 444444 0 1 1 0 4 9 888 4 99 4 66 11 4
consensus : TATTCATG---GTGTAGTACACTTTCAGACATTGCAGACAAACAATGTGGCAAACTGC-GAACATA-TTCATT-ATTCAAAACAAGATTCTGTA-------GAG-AA-AA----------TATTTTTCAGTAATTC-GTAATCCTCAAGTCTTGA-AATGTT-TT----ACAAATTTCA-G-AATCAGTTCTCATTCTTTGG--C-TATTGA-AACTG--G--CG-TTAC----ACAA--AA--ACACAAGTAAA--TGAGAGAAAATGTAGTGTCTG-AAGTC-TGAC--TGT--TGAAGA---TG-A-TTCCATTT-T-A-CAT---TT-GA-TT-GTA----CAG-C-ATACCAACACCT-AAGAAAACCA--TTCAT-GA-ATCCAT--G--AACACCTTG-TATAA--AAACTT----TAT----AAAC-----CTGT-------GTAAT-AG-AG-AAAA---N-T-----TATTTGGCTTTAT-GA-GTAATGAATGTG-ACAGTG--TNAT------TG-AAATTTT-GCCAACTACAT-A-TATA-AGCT-G--CTCAC--AA-TTGAGAAAA
Reference ( family-6757 ) : TATTCATG---GTGTAGTACACTTTCAGACATTGCAGACAAACAATGTGGCAAACTGC-GAACATA-TTCATT-ATTCAAAACAAGATTCTGTA-------GAG-AA-AA----------TATTTTTCAGTAATTC-GTAATCCTCAAGTCTTGA-AATGTT-TT----ACAAATTTCA-G-AATCAGTTCTCATTCTTTGG--C-TATTGA-AACTG--G--CG-TTAC----ACAA--AA--ACACAAGTAAA--TGAGAGAAAATGTAGTGTCTG-AAGTC-TGAC--TGT--TGAAGA---TG-A-TTCCATTT-T-G-CAT---TT-GA-TT-GTA----CAG-C-ATACCAACACCT-AAGAAAACCA--TTCAT-GA-ATCCAT--G--AACACCTTG-TATAA--AAACTT----TAT----AAAC-----CTGT-------GTAAT-AG-AG-AAAA---N-T-----TATTTGGCTTTAT-GA-GTAATGAATGTG-ACAGTG--TNAT------TG-AAATTTT-GCCAACTACAT-A-TATA-AGCT-G--CTCAC--AA-TTGAGAAAA
gi|1 : TTCTGTA-------GAG-AA-AAACATATTTAATATTTTTCAGTAATTCTATAATCCTCAAGTCTTGCCAATGTTCTT----ACAA-TTTCA-GCAATCTGTTCTCATTCTTTGGGAC-TATTGATAACTGAAG--CG-TTACTATAGCAA--AACAACA-AAGTAAAATTTAAAGGAAATGTAGTGT-TGCAAGTCCTCAC--TGTGTTGAAAAGAATG-AATTCCATTT-T-AATAT---TTTGA-CTCGT-----TAG-CTAAACCAACAC-T-AAGAAAACCAAATTCAT-AAGATCCAT--TTCAATTCCTTG-TATAATAAAACTT----TAT----AAACAAATACTGTAACATTTGTAATTAG-AA-AAAA---A-AAGAGATATTTGGCT--AT-GAAGTAATGAATGTG-ACAGTGT-TAAT------TG-AAATT------------AT---TAT---GCT-GGCTTCAC--AATTTGAGAAAA
gi|10 : caagtagcagtgcttcaatattatATACATG---GTGTAGTACACTTTCAGACATTGCAGACAAACAATGTGGCAAACTGT-GAACATA-TTCATT-ATTCAAAACAAGATTCTGTA-------GAGAAA-AA----------TATTTTTCAGTAATTC-GTAATCCTCAAGTCTTGA-AATGTT-TT----ACAAATTTCA-A-AATCAGTTCTCATTCTTTGG--C-TATTGA-AACTG--AATCA-TTAC----TCCATGAA--GC-CAAATAAA--Tagttgaatgtatcaatcacctagatgttatttttagcttatctatctttggagaaattacttcaatctatgaagttaatggtctatatgaaaacttttgtttcctttgctatggccctctctctggagctcggaaattggaaataaattataaacct
gi|12 : TGT-------GTAAT-AG-AG-AAACT--T-T-----TATTTGGC-GTAC-GA-GTAATGAATGTG-ACAGTG--TTAT------TGAAAATTTT-GCCAACTACAT-A-TAT--AGCT-G--CTCAC--AT-TTGAGAAAA
gi|15 : TT-T-G-TAT---TT-GA-TT-GTA----TAG-C-ATACCAACG--T-A-----------------GA-ATCCAT--A--AACACCTTG-TATGA--GAACTT----TAT----AAAC-----CTGT-------GTAAT-AG-AG-AAAAGAGT-T-----TATTTGGCTTttctattgatcataactttgttattttactttatc
gi|16 : tcatatccTCATG---GTGTGACA-ACTTTCA-ACATTG-AGA--AACACTTTG-CAAACTGC-GAACATA-TGCATT-ATTCAAAACAAGATTCTGTA-------GAGAAA-AA----------TATTTat
gi|17 : tg--G--CG-TTAC----ACAA--AA--ACACAAGTAAA--TGAGAGCAAATGTAGTGTCTGCAAGTC-TGAC--TGT--TGAAGA---TGCA-TTCCATTT-T-G-TAT---TT-GA-CT-ATA----TAG-
gi|19 : -------GAG-AATAA----------TATTTTTCAGTAATTT-GTAATCCTCAAG
gi|2 : TATTCATG---GTGTAGTACACTTTCAGACATTGCGAACAAATA-----------TGC-AA----------TT-ATTCAAAACTAAATTCTGTACTATGTAGAG-AA-AAC---------TATTTT-CAGTAATTC-GTCATCCTCGCGTCTTGC-AATTTT-TTTCCTCCAAATTTCA-G-AATAAGTTCTCATTCTTTGG--C-TATTGA-AGCTG--GG-CG-TTAC----ACAA--AA--ACACAAGTAAA--TGAGAGAAAATGTA---------AGTC-TGAC----------AG----------------T-T-G-TAT---TT-GA-CC-GTATATACAG-C-ATACCAACACCT-AAGAAAACCA--TTTATAGA-ATCCAT--G--AACACCTTG-TATAA--GAACTT----TAT----AAAC-----CTGT-------GTAAT-AG-AGAAAAA---A-T-----TATTTGGC-TTAT-GA-GTAATGAATGTG-ACAGTG--TCAT------TG-AA----T-GCTAACTACAT-A-TAT--AGCT-G--TTCAC--AA-CTGAGAAAA
gi|3 : aaTATACATG---GTGTATTACACTTTCAGACATTGCAGACAAACA-TGTGGCAA-CTGTTGAACATA-TTCATT-AT-CAAAACAAGATTCTGTA-------GAG-AA-AA----------TATTTTTCAGTCATTC-GTAATCCTCAAGTCTTGA-AATGTT-TT-----CAAATTTCA---AATCAGTTCTCATTCTTTGG--CTTATTGA-AACTG--G--CGCTTAC----ACAA--AA--A-ACAAGTAAA--TGAGAGAAAAT-TAGTGTCTG-CAGTC-TGACTGTGT--TGAAGA---TG-A-TTTCCTTT-TAA-CAT---TT-GAGTT-GTA----CAG-C-ATA-CAACATCTAAAGAAAACCA--TTCAT-AA-ATCCAT--G--A--ATCTTG-TATAA--AA--TT----TAT----AA-------CTGT-------GTAAT-AG-AG-AAAT---A-T-----TATTTGGCTTTAT-GA-GTAATGA--GTG-AC---G--TAA--------G-AAATGTT-GCCAACTATATAA-TGTA-AGCTGG--CTCAC--AA-TTGAGAAAAgttgatttatcattaccttgttatttta
gi|4 : -AATGTT-TA----ACAAATTTCAAG-AATCAGTTCT-ATTCTTTG---C-TATTGA-AATTG-----CG-TTAC----ACAA--A----CACAAGTAAA--TGAGAGAAAATGT-GTGTCTG-AGAGC-TGA---TGT--TGAAGC---TG-A-TTC-ATTTGT-A-CAT---TT-GA-TT-GTAA---CAGAC-ATACCAA-AT-T-AAGAAAACCA--TTCAT-GG-AATCAT--G--AATACTTTG-TA-AA--AAACTT----TAT----AAA------CTGT-------GTAAT-AG-AG-AAAA---A-T-----T-TTTGG--TTAT-GA-GT-ATGAATGTG-ACA-TG--TGAT------TG-AAATTTT-GCCAACTA-AT-A-TAT---GCT-G--CTCA---AA-TTGGGAGAA
gi|5 : t-TTCCATTT-T-A-CATATATT-GA-TT-GTAG---CAG---ATACCAACACCT-AAGAAA--------TAG-GA-ATTCATTAG--AACATATTGCTATAA--AAA-TT----TGTTGAGAGAG-----CCGT-------GTAAT-AG-AG-AAAA---AAT-----TATTTGGCT--GA-GA-GTAAT-AATGTGGAC-GTG--TTAT------GA-AAATTTT-GCCAATTACAT-A-TATA-GCTT-G--CTCAC--AA--TGAGAAAAattgaattatcataattggttattttaatttatctatcttttaggatggttttcttctgtggttttatgtattctttggtaatgctctgggcccaaaatggaataaaattacttacttatttcttac
gi|6 : TAA--GAACTTAATTTAT----AAAC-----CTTT-------GTGAT-AGCAA-AAAG---T-T-----TATCTGAC-TTAT-GA-GCAATGAATGTG-ACAGTG--GTAT------TG-AAA-TTT-GC-----ACAT---TGTACAGCT-G--TTCAT--CA-TTAAAAAAAgttgattattcatactttgtttattttactttatctatcaattctagataatttttcttctatgatttatgtataatgaactttgttctttgcatgccctcttggaaaagcctgaaaggaaaataaattatactta
gi|7 : tgattagagcagacaggccagacacatattttatagggcacccttgaagttgttatataatAACTATAT-AATGTA-AGCT-GG-CTCAC--AA-TTGAGAAAAagttgatttaccataacattgttattttactttatccatcttttgcataatcattctattcctatctttacttgccctctgggtcccaaattagaaataaattatatacttacttactat
gi|7 : G--G--CG-TTAC----ACAA--AA---CACAAGTAAA--TG-GAGAAAAT-TAGTGTCTG-AAGTC-TGACTGTGT--TGAAGA---TG-A-TTCCTTTT-A-A-CAT---TT-GAGTT-GTA----CAG-C-ATA-CAACATCT-AAGAAAACCA--TTCAT-GA-ATCCAT--G----TCTCTTG-TAT-A--AAACTT----TAT------AC-----CTGT-------GTAAT-AG-AG--AAA---T-T-----TATTTGGCTTCATGGA-GTAATGAtnnnnnnnnnnnnnnnnnnnnnnnnnggcgttacacaaaacacaagtaaatggagaaaattagtgtctgaagtctgactgtgttgaagatgattccttttaacatttgagttgtacagcatacaacatctaagaaaaccattcatgaatccatgtctcttgtataaaactttatacctgtgtaatagagaaatttatttggcttcatggagtaatgattcagtttcaa
gi|8 : aactatataatgtaagctggctcacaattgagaaaatnnnnnnnnnnnnnnnnnnnnnnnnnTAATGAATGTG-TCAGTGGTTAACATGTAGTG-AAATTTTTGCCAACGACAT-A-T----AGCT-G--CTCATTAAA-TTAAttcagtttcaa
gi|9 : tttttaTATTCATGTGTGTGTAGTACACTTTCAGACATTGCAGACAAACAATGTGGCAAACTGC-GAACATAGTTCATTTATTCAAAACAAGATTCTGTA-------GAG-AA-AA----------TATATTTCAGTAATTC-GTAATCCTCAAATATTGA-AATGTT-TT----ACAAATTTCA-G-AATCA-TTCTCATTC-TTGG--C-TATTGA-AACTG--GA-CG-TTAC----ACAA--AA--ACACAAGTAAA--catcaacttaacaaagtcgatttattgatcataacctatgggtctattttacctatctgtaaaatatctgtcttttggataactctctcttttatgactttgttatatcagtcttgcaacatgtattcttggccccaattggaaaaatcagttaatttacttactaccttac
5 sequences could not be aligned to this reference sequence:
Unaligned ( gi|11 ): CATAAACTGTTTGTTATATTTACTTATCTATCATTGGATGCACTTTCTCTGATCTGTGTTATACTTTATGTAATCTCGATTGTATGCCCTCTGGCCCCAAAATTGGAAATAAATTAGCTATACTTACTTACTATATTAC
Unaligned ( gi|13 ): CATAAACTGTTTTGTTATTTTACTTTATCTATCATTGGATGCACTTTCTTATCTTGTATATGTTTATGTATATCTCATTGTATGCCTCTGGCGCCCAAAATTGGAAATAAATTGCACTAACTTACTTACTT
Unaligned ( gi|14 ): CATAACTTTGTTATTTTACTTTATCTATCATTTGGATGGTCTTTCTTCTGTGGTTTATGTATATCTTTGTATGCCCTCTGGGCCCAAAATTGGAAATAAATTACTTACTTACT
Unaligned ( gi|18 ): TCTTGTTTATGTGAAACTCTGTATTCTTTGTATGCCCTCTGGGCCCAAAATTGGAAATTACTTGTCATTTTATTTAAATTATT
Unaligned ( gi|20 ): CCCAAAATTGGAAATAAATTACTTACTTACGCA