lowQualScore : 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 1 999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 2222 11111 22 22222222222 999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 11111 22222222 111111 44444444444444444444444444444444 11 333333333333 1111 4444444444444444 111111 1 1
lowQualScore : 5 444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 1 3 3 1 2222 44 55 555 3 55 00000 4 66 4 2 44444444444 0 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 44 4 44 3 4 4 0 555 66666 44444444 2 4 999999 11111111111111111111111111111111 1 11 666666666666 7777 3 5 7777777777777777 5 000000 55 6 3 0 4 5
lowQualScore : . ............................................................................................................................................................................................................... . . . . .... .. .. ... . .. ..... . .. . . ........... . .................................................................................................................................................................. .. . .. . . . . ... ..... ........ . . ...... ................................ . .. ............ .... . . ................ . ...... .. . . . . .
lowQualScore : 0 888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 6 6 6 8 9999 88 00 555 6 00 55555 4 00 4 9 33333333333 7 222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 66 4 66 9 4 4 3 444 77777 44444444 9 4 666666 88888888888888888888888888888888 5 55 000000000000 5555 0 7 9999999999999999 7 000000 99 7 2 0 0 0
consensus : TTTTGTTTTTACAAAAGTGTGGAATGAAGTGGATCCNAANTA-ATNACAAAANNACAATCACAGC--ATA--CAGTN-CA--GCGGTGC----AGCC----CTGACTG--AGCTATTC-TAAGCACAAG----ACCCGT-ATAAATATGAACCA-N--GT-TT----NCAA---A-AACA-------T------------------T-------TTTTGGTCGG-T-TTTTCGTGAATTTCGACCCCAAGGC-AGGGG-T--GC--CC-CT--AAAA--A--T-ACTATTGTAAA-TTGT--T-CTTAAGATTGTAACCTA-----ATATCAA-AC---AAT-TTCAAATT-A--A-AAA--AAATC---T---GGG--GACAGGCCTGCCT--TGA----AG--GACTTCAAAGCCAAA--ATTCATGTCAAAAT-----CTA--T--AAAAA-TGGGGAA-A-AT---G--G-----TAGG-CCAACT-TTGAAGGTTAA-TTTCAAC-ATTG-TAGAT-A-A-TN-GATTATAGGTT-GAAATCG-AAATAT----N-AAA-CATTCANATACATGTATG-------------TGTACGN-CAGAAAATAG--C---C-GAAGAAAC----TTGAT-AC----G-TG-TACC--AA-GT-TAC-NTTTT-CGGAAAATTGTTTT-CCCGTNTT-GTCCTTTCTTATT
Reference ( gi|2 ) : TTTTTTTTTTACA----TTTGAACT----TGCATCTTAACTAGATTACAGAAGGAAAATCACAGC--ATA--CAGTG--A--ACAGTGT----AGCC----CTGA--G--AGCTACTCCTTAGTACAAG----ACCCGT-ATAAATATAAACCA-C--GT-CT----ACAA---A-AACA-------T------------------T-------TTTTGGTCGG-T-TTTTCGTGAATTTCGACCCCAAGGC-TGAGG-T--GT--CC-CT--AAAA--A--T-ACTATAATAAA-TTGT--T-CGTAAGTTTGCAACTTA-----ATATTAATAC---AATTTTTAAATT-A--A-AAA-AAAATC---T---AGG--GACAGGTCTGTTT--TGA----AA--GATTTCAAAGTCAAA--ATTCATGTCAAAAT-----CTAAATCAAAAAA-TGGGGAA-A-AT---G--G-----TAGG-CCAACT-TTGAAGGTTAA-TTTTAAC-ATTG-TAAAT-A-A-TT-GATTATCGGTTGGAAATCG-AAATAT----C-AAA-CATTCAAATACATGTATG-------------TGTATGC-CAGAAAATAG--C---G-AAAGAAAC----TTAAT-AC----G-TG-TACC--AA-AT-TAC-TTTTT-CGAAAAACTGTTTT-CCCGTATTGGTCCTTTCTTATT
gi|8 : TTTTGTTTTTACAAAAGTGTGGAATGAAGTGGATTCAAACTA--TGACAAAAGTAC--TCGCATT--ATATTCTGCT--A--ACAGTAC----AAC------TGACTG--AACTATTC-TAAACACAAGTAACACCCGT-GAAAATATGAACCA-G--GT-TT----TCAA---A-AAGAA------T------------------TCCCAATATTTTTGTCAG-T-TTTTTATAACTTTTGACTCCAGGGC-AGGGA-T--GT--CC-AT--AAAA--A--T-GTTAT--TGAA--TAT--------------CAA---A-----ATA--AATA----AA----CAAATA-A--ATAAA-CAAA---------GGG--GACAGG-CTGCCT--TGA----TG--GACTTAGAAGT-A--------ATGTTAAAAT-----CTA
gi|13 : ttaaactggtttattaaaagagaattatacacataattacgcaaaagtgtcgaaaatgcaaaatataaCTTAAATA-ATCACAAAATAATAATCACAGCTTATA--CTGTC--A--GCCGTGT----AAA------TGA--GTGAGCTATTC-TAAGCACAGG----TAATAT-ATTAATATGAACCA----GT-TT----TCAA---A-AGCA-------TGAAACAGGTCCACTAAAAT-------TTATAGTT---T-TTTTCGTGAATTTCTACGCCAAGGT-AGAAA-T--GC--CT-CT--AAAA--t
gi|7 : aAACCACAAC--ATA--TACTACCG--ACGGTGT----AGACGTGGCTGACTG--AGCT---------CATAAT----ACTCAT-TTAAATATCAAC-A-G--AT-CC----CCCA---A----------------------------------------TTTG-TCGG-T-TTCCCGTGAAATTCGAATCCAAGAC-ttgttcctttaagattgaaatgtttgaaaaatatcgaaaaagatctt
gi|17 : tcttttggtcgcacatgtgcttccgtcgaattacgcagaatggaagataatagatcgcccatggcgaggatggttctttttaactgcatttggtagaaaattacaattttgaagcattttatatgaagaatggacataatttaaactaatcattggagaaatatacatatgtagtgtatgacaaaaagtgttggaaatgcgaaataaaaataagactaaaaatgttgcctaaggtggattcgaaccatggtaaaatatATCACAGC--ATA--TACTGTCA--GTGGTGC----AGCT----------G--AGCTATTC-----TACA-----------C-ATAAGTAT-------------TT----ACAA---A-ATTA-------T-----------------------------------A-T-TTTTCAAGAATTTCAATTCCTAGGCATG-GT-T--GC--CT-CT--AAGAATA--T-ATTATGGCAAA-TTGT--T-TTTGAAATTGTAACCTA-----aggatta
gi|4 : taaccC--ATG--CAGTA--ACAGCAGTGC----AGCTAA--CTGA--G----CTA-TCTTAAGCACA---------CGT--------TGAACAA-G--GT-ATTCGAACAGTTTA-AACA-------G------------------T-------TT-----CCC-T-TTTTCGTGAATTTCGACCTCAAGGC-AGGGG-T--GC--CCGTT--TAAA--A--T-ACTATTGTAAA-TT-T--T-CTGATGATTGTA-CTC-------TATCAAGAT---A---TCCAAAC------------AAATC---TT--AGT--GACAGACCTTTCT--TAA----AG--GAATTCAAATCCCAA--ATTCATTTCAAAAT-----CGGTGTTTAGA---TGGAGGA-A-ATTCCG--ACT---TAG--CCAACT-TTGAAGATCAT-TATCAAC-ATTG-CAGAC-A-A-TT-CGTAAT-------AAAAAG-AAATA-----C-GGA-AATTC-AAT-----TATA-------------TGTACGA-CTGAAAAT---------------AACTCTTTTGAT-ATCACAG-TG-T--C--AT-GT-TAT-GTTTC-AGGAAAATTGTTCT-CCCCTTTTGCTCTTTACTTtcaa
gi|3 : --ACAGTGTTATAAGCC----CTGAA-G--AGCTACTCCTTAGTACAAG----ACCCGTTATAAATATAAACCA-C--GTCCT----ACAA---A-AACA-------T------------------T-------TTTT-GTCGGTT-TTTTCG-GAATTTCGACCCCAAGG--TGAGGTT--GT--CC-CG--AAAA--ATTT-ACTATCA-AAA-TTGTGGTGCGTAAG-TTGCAAACTAC----ATA-TAATACAAAAATTTTTAAATTAA--A-AAA-AAAACC---TATAAGG--AACA-GTCTGTTT--TGAAT--AG--GATTTCAAAGTCAAAAGATTCATGTCAAAAT-----CTAAATCAAAAAATTGGGGAA-A-AT---G--GAAGA-TAGGACCAACTATTGAGAGTTAATTTTTAACAATTGATAAAT-A-ATTT-GATTATCGG-TGGAAATCG-AAATAT----C-AAA-CATTCATA-ACATGTAGG-------------TGTATGC-CAGAAAATAG--CGAAG-AAAGAAACCT--TTAATCAC----GTTGTTACC--AA-AT-TAC-CTTTT-CG-AAAACTGTTTTCCCCGTATT-GTCCTTTCTTATTtgtgacattgatcttttt
gi|5 : TGC----AGC------TGACTG--AGGTACCCCA-AGAACAAGTTATATCTGT-GTTAATATGAACCA-A--AT-TT-----TAA---ATAACAGATTCCCTAA----------------T-------TTTTAATCGA-TGTCTTCGTGAATTTCGACCCCAAGAC---AGG-T--GTTCCC-CTTAAAAA--G--T-GCTATTGTAAA-TTCT--T-TATTAGATTGTAATCTATCCAAATATCAAAAT---AATTCTTAA----------------------------G--GACATGCCTGTCT--TGA----AG--GACTTCAAAGAAAAA--GGTTATGTCAAA---------------------TGGG-AA-A-AT---GCTGCT---TATG-CCAACT-TTGAAGGTTAA-CTTCAAC-ATTG-TAGAT-A-A-TA-AATTACAGGTTTGGAATGA-AAATAT----G-AAA------AAAT-CATATGTA-------------TGTACGA-CTGAAAATTA--C---C-AAAGAAAC----T---T-GC----C-TA--ACT--AA-GC-GACTTTTTT-CGAATAAtctttcttcttttttttt
gi|1 : AAT----ACTGGT-ATAAATATGAACCAGCAGGT-TT----GTAA---A-AA----------------------------T-------CTTTG-TCGG-T-TTTTCGTAGATTTCGA-CCCATGGC-AGTAT-T--AC--CC-TT--AGAA--A--T-ACTACTGTAGA-TTGT--T-CTCAAGATTGTAACCTA-----------------------TCAAAAT-ACCA-AAA-CAAATCT--T---GGG--GGCAAGTCTGCCT--TAATTATAG--GACTTTAAGGCCAAA--ATCTATGTCAgaggtattttagtttgttaccctaaattgatct
gi|6 : tgtccttccgccgagtaacacagtatgaatgattaatgtccttggaagaaatataccacgattaatgactgcttaaattgtataatatcactgaatgtcttttgtgtagagtaaactagattatggaaggaagatacatgtatgtagatatttatataagatacaaaaaaaaaacaacgtgttgaaggtgggaaatagaagtaaaattgtggtgcgagtcggattcgattcgaactatggcaaaaagttatcgcaacataaaattctaatcgctgcttcaactcctatagcggtgcattctaagcactcaaatgtGT-ATAAATATGAACCAGCAGGT-TT----GTAA---A-AA----------------------------T-------CTTTG-TCGG-T-TTTTCGTAGATTTCGA-CCCATGGC-AGTAT-T--AC--CC-TT--AGAA--A--T-ACTACTGTAGA-TTGT--T-CTCAAGATTGTAACCTA-----------------------TCAAAAT-ACCA-AAA-CAAATCT--T---GGG--GGCAAGTCTGCCT--TAATTATAG--GACTTTAAGGCCAAA--ATCTATGTCATAATTGGTGCT---T----ATA-TGGGGAA-ACAC---T--G-----T---------T-TT-----TTAA-TTTCAAC-A------------------ATTATAGATTTAAAATGA-AAATATGAAGA-AAA-CG-TCATATACATGTATATATGTATGTACACTGTACGT-CAGGAAATAA--T---T-CAAGAATC----TTt
gi|9 : actgCGG-G-TTTTCTTCAAATTTAACTCCAAGGC-AAGGG-T--AC--CT-CT--AGAG--A--gctttaacaatgcgacatttcccccggaaatatgttctccgcagtagatgtttccttttgttacctgatttgatcttt
gi|10 : tttattcg-T-TTTTGGTGAAAGTCTTCCCCAGGGC-AAGGA-T--GT--TC-CT--GAAA--G--TCACC-TG-TAAA-TTTT--T-CTTAAGCTTGCAACCTACCA--GTATCAA------AATATC---AT-------------AATT---T----------CAGGTCTACCC--T-A----AT--GACTTCAAAGTCA----ATT-------------------------ACAA-TGTAGAA-A-A----------------A-CTAACT-CTAAAGATTGA-TTTCAGC-ATTG-CAAAT-A-A-TA-AATTGTAATTTTAAAA--A-AAAT-T----T-AAA-CAT----ACACACG---G---------------------CAAATAATAAT-C---C-AGTGAAAC----TTGAT-AT----A--G-CAACGGAA-AT-T-C-ATTT---GGTAAATTG-TTC-CCCGTTTTaaaaaaaaacccaatagaatacaacctatatattcttagggggcacgcctgaaagccatctccaaatctttacttaaatggggaaatagctctttaggccaactttgaaggttagtttaaacattatggatatattagattataagtttcgaaataaagaatcgttgaaaattcacgtgtacgacggaactgaagaaatttgatataacaatgtgcctttttcagatacagatcttttctatagaattttcttttgttgtcctgatttgatccttt
gi|19 : aatttatttatctatGGATTTAGACTCCAAAGC---AGG-TATGC--CC-CT--AAAAC-C--T-GTTATTGTAAACTTGT--T-CGT-AGATTGTAAC-CA-----AC-------C---AA----TATATC-A--A-AAAGAAAATCTTAT---GGGCAGACAGGCC----T--TGA----AACTTATTTCAAAGctcttgttaccctaaattgat
gi|11 : --A-GAG-AAAATC---TT--AAA--GGCTGGCCTGTCT--TG---------GACTTTCCAGCCAAA--ATTCACGTCAAAGT-----TT-------------------------------------AGG-TCAACT-TTGAAGGTTAT-TTTCATC-ATTG-TAGAT-T-A-TA-AATTGTAGGT------TCG---ATAT----G-AAA--ATTC--ATATATACA-G-------------TGTATTTACAGAAAA-AGAAC---T-GAACAAAC----TTGAT-AT----G----------AA-ATGTAT-TTTTTACGGAAAATTct
gi|12 : attgttcagaatgtaatataacaaaatatcgag---T---AAG--GACAAGCCTACCCAATGCT---AA--AATT--AAAGCCAAA--ATT-GTGCCAAAAT-----ATAGA--AAACAG-TTCAAAACA-GT---GT-A-----TAGG-ACAACT-TTGAAAATTAG-TTTCAGC-ATTG-TAAAT-A-A-----ATTTTAGGTTCT-AATTGTAAATTT----G-AAA-ACTTCAGATATATATActggggcattcatatttctt
gi|9 : gttttcaggaattttgacccccagcaaggatgaccctaaacagtctccattgttttaaAAA-TGGGGAA-A--T---A--GCTCTTTAGG-CCAACT-TTGAAGGTTAG-TTTAAAC-ATTA-TGGAT-ATA-TTAGATTATAAGTT-----TCG-AAATAA----A-GAATCGTTGAAA---ATTCACG-------------TGTACGA-CGGAA-------C---T-GAAGAAAT----TTGAT-A----------TAAC--AATGT-GCC-TTTTT-Cctttaaaaaaaatcaact
gi|15 : tttattcgcgggttttcttcaaatttaactccaaggcaagggtacctctagagaaaaaaaaaacccaatagaatacaacctatatattcttagggggcacgcctgaaagccatctccaaatctttacttGGA-A-AT---G--G-----TAGG-CCAACT-TTGAAGGTTAA-TTTTAAC-ATTG-TAAATTA-A-TT-GATTATCGGTTGGAAATCG-AAATAT----CAAAA-CATTCATA-ACATGTA-G-------------TGTATGC-CAGAAAATAG--C---GAAAAGAAAC----TTAAT-AC----G-TG-TACC--AA-AT-TAT-CTTTT-CGAAAAACTGTTTT-CCCGTATTTGTCCTTTagatacagatcttttctatagaattttcttttgttgtcctgatttgatccttt
7 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|14 ): TTTTTCGCCGTGGCAGACGTGCTCCCGTCGTGTAAAGCAGAATGAATGATGATTATTGTCTTGAGGGGGAAACTATCTGAGTTCTTTTGTAATACATTTTATATAAAAATGGATATGCATTTAAACTAAATTCAAATGTGAAATAAAAGATAACAATGAAAGTGTGGCTTGAGGCGGATTCAAAC
Unaligned ( gi|16 ): TTTATTTAAAAAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTATGAGTATGAAAAAAAGTTGAAATTGCAAAAGAAAACATTAAAATGTGTGGCACGAGGCACATCCGAACCATGACAAAATCACCGTGCAACGTATTCTGCCAGGGTGCAGTTGACTGAGC
Unaligned ( gi|18 ): ACATCATAGGTTCAAAATTTAAAAAAAAGTCTATGTATATGTACAACAGAAATAAAGAAACATGATCTAAATTCACAATGTGACTTTTTCCGGAAAATAAATCTTTTCTTTTGTTACCCTAAATTGACCCTTTCC
Unaligned ( gi|20 ): TAATTAAATAAGATATGAAAAAGTGTTGAAATGCGAAATAAAAAATTAAAAGAGTGTTGCGTGAGGCAGATTCAAAGCATGGCAAAAAATAATCACAGCATATAAAT
Unaligned ( gi|21 ): ATAACAATGTGACTTTTTCAATGGTATTTTCTTTTGTTACCCTGAATTGATCCCTTTCCTCGAAATCTT
Unaligned ( gi|22 ): GATCTTATAACAATCGTGATTTTTCACATTGGTAAATTTTCTTTTGTTACCCTGAATTGATCCTTTCC
Unaligned ( gi|23 ): ACAATATGACTATTTCTGGGAAATTGTTTTCTCTTAGAAATGTTTTCTTTTGTTACTCTGAATTGAT
Alignments
lowQualScore : 22 11 3333333333333 3333333 222222222 111 111111111 77777777777777777777777777777777777777777777 1111111 999999999999999999999999999999999999 22222222 22222222 9999999999999999999999999999999999999999999999999999999999 1111 111111 11111 11111111111 222222222222222 22222222 111111 3333333333333333333 1111111 1
lowQualScore : 2 8 0 1 99 3 4 1 1 22 1 33 44 66 1111111111111 5 6666666 2 0 99 444444444 111 4 666 333333333 4 4 00000000000000000000000000000000000000000000 0 3 3 3 3 44 0000000 0 4 3 1 44 3 888 0 999999999999999999999999999999999999 1 1 55555555 77 2 2 0 2 11111111 7777 0 55 3 0000000000000000000000000000000000000000000000000000000000 4 4 4 4 4 0 4 4 2222 777777 22 3 0 22222 55555555555 55 444444444444444 2 77777777 4 111111 55 0 6666666666666666666 8 44 1 0000000 777 777 5 77 6 0
lowQualScore : . . . . .. . . . . .. . .. .. .. ............. . ....... . . .. ......... ... . ... ......... . . ............................................ . . . . . .. ....... . . . . .. . ... . .................................... . . ........ .. . . . . ........ .... . .. . .......................................................... . . . . . . . . .... ...... .. . . ..... ........... .. ............... . ........ . ...... .. . ................... . .. . ....... ... ... . .. . .
lowQualScore : 5 8 8 0 00 2 8 0 0 22 0 11 22 11 0000000000000 0 7777777 5 3 77 888888888 000 0 222 666666666 0 9 00000000000000000000000000000000000000000000 5 1 1 8 1 22 4444444 4 4 1 5 22 1 444 5 000000000000000000000000000000000000 2 4 22222222 99 3 9 8 3 55555555 1111 2 00 5 5555555555555555555555555555555555555555555555555555555555 0 0 0 0 0 5 0 0 4444 666666 66 6 2 44444 33333333333 66 777777777777777 4 77777777 0 555555 55 8 3333333333333333333 0 66 0 5555555 000 888 0 77 7 0
consensus : TTTTNTTTTTACAAAAGTGTGGCNTGAGGCGGATCCGAACCA-ATGACAAAATNACAATCGCAGC--ATA--CAGTG-C----AG-CGGTGCAGC-----CTGACTGAGCTACTC-TAAGCACAAG----ACCCGT---ATAAA-TAT--GAAC---CAG---GTT-TNCAAAAA-CA-------T------------------T-------TTTTGGTCGGT-TTTT-CGTGAATTTCGACCCCAAGGCAGGGNTGCCC-CT--AAAA--A--T-ACTATTGTAAA-TTGT--T-C--TTAAGATTGTAACCTA---ATAT----CAA-A-AA-T---T-AAATC--AAAAAAAATC---T---GGG--GACAGGCCTGCCTTGA----AG--GACT----TCAAAGCCAAA--ATTCATGTCAAAAT------C--T--A---T--AA--AAA--TGGGGAAA-AT---G--G-----T----AGG-CCAACT-TTGAAGGTTAA-TTTCAAC-ATTG-TAGA-TA-A-TNGATTATAGG-TT-GAAATCG-AAATAT----GAAA-CATTCANATACAT-GTATG-------------TGTACGNCAGAAAATAG--CCG--AA-GAAA------C--TTGAT--AC----G-TG-TACC--AA-GT-TACNTTT---T-C-GGA---AAAT---TGTTTT-CCCGT-NTT-GTCCTTT-CTTATT
Reference ( family-668 ) : TTTTGTTTTTACAAAAGTGTGGAATGAAGTGGATCCNAANTA-ATNACAAAANNACAATCACAGC--ATA--CAGTN-C----AG-CGGTGCAGCC----CTGACTGAGCTATTC-TAAGCACAAG----ACCCGT---ATAAA-TAT--GAAC---CAN---GTT-TNCAAAAA-CA-------T------------------T-------TTTTGGTCGGT-TTTT-CGTGAATTTCGACCCCAAGGCAGGGGTGCCC-CT--AAAA--A--T-ACTATTGTAAA-TTGT--T-C--TTAAGATTGTAACCTA---ATAT----CAA-ACAA-T-T-TCAAATT--AAAAAAAATC---T---GGG--GACAGGCCTGCCTTGA----AG--GACT----TCAAAGCCAAA--ATTCATGTCAAAAT------C--T--A---T--AA--AAA--TGGGGAAA-AT---G--G-----T----AGG-CCAACT-TTGAAGGTTAA-TTTCAAC-ATTG-TAGA-TA-A-TNGATTATAGG-TT-GAAATCG-AAATAT----NAAA-CATTCANATACAT-GTATG-------------TGTACGNCAGAAAATAG--CCG--AA-GAAA------C--TTGAT--AC----G-TG-TACC--AA-GT-TACNTTT---T-C-GGA---AAAT---TGTTTT-CCCGT-NTT-GTCCTTT-CTTATT
gi|1 : ATAAAATTCTAATCGCTGC--TT---CAACT-CCTATAG-CGGTGCA-------TT--CTAAGC-ACTC--AAATGTAAT----ACTGGT---ATAAA-TAT--GAACCAGCAG---GTT-TGTAAAA---A-------T------------------C-------TTT--GTCGGT-TTTT-CGTAGATTTCGA-CCCATGGCAGTATTACCC-TT--AGAA--A--T-ACTACTGTAGA-TTGT--T-C--TCAAGATTGTAACC------TAT----CAA---AA-T-------ACC--AAAACAAATCT--T---GGG--GGCAAGTCTGCCTTAATTATAG--GACT----TTAAGGCCAAA--ATCTATGTCA
gi|10 : tgtccttccgccgagtaacacagtatgaatgattaatgtccttggaagaaatataccacgattaatgactgcttaaattgtataatatcactgaatgtcttttgtgtagagtaaactagattatggaaggaagatacatgtatgtagatatttatataagatacaaaaaaaaaacaacgtgttgaaggtgggaaatagaagtaaaattgtggtgcgagtcggattcgattcgaactatggcaaaaagttatcgcaacT-TTTT-GGTGAAAGTCTTCCCCAGGGCAAGGATGTTC-CT--GAAA--G--TCACC--TGTAAA-TTTT--T-C--TTAAGCTTGCAACCTACCAGTAT----CAA-A--A-T-A-TCA---T--AA------TT---T----------CAGGTCTACCCT-A----AT--GACT----TCAAAGTCAA----------TTACAAT------G--T--A---G--AA--AAA----------------------------------CTAACT-CTAAAGATTGA-TTTCAGC-ATTG-CAAA-TA-A-TAAATTGTAAT-TT-TAAA-AA-AAAT-T----TAAA-CAT------ACAC----------------------ACGGCAAATAATAA--TCC--AGTGAAA------C--TTGAT--AT----A--G-CAACGGAA-AT-T-CATTT-------GGT---AAAT---TG-TTC-CCCGT-TTT-CTCTTt
gi|11 : aatttatttatctatA-TTGT--T-C-----AGAATGTAATATA---A-------CAA-A--A-T-A-TCGAG----AGAGAAAATC---TT--AAA--GGCTGGCCTGTCTTG---------GACT----TTCCAGCCAAA--ATTCACGTCAAAGT------T--T--A--------------------------------------------GG-TCAACT-TTGAAGGTTAT-TTTCATC-ATTG-TAGA-TT-A-TAAATTGTAGG-T------TCG---ATAT----GAAA--ATTCATATATACAGTGTA-------------TTTA---CAGAAAA-AGAACTG--AA-CAAA------C--TTGAT--AT----G----------AA-ATGTATTTTT---TAC-GGA---AAAT---Tgttaccctaaattgat
gi|12 : -TTTT-CAGGAATTTTGACCCCCAG-CAAGGATGACC-CT--AAActggggcattcatatttctt
gi|12 : gG--GACAAGCCTACCC--A----AT--G-CTAAAATTAAAGCCAAA--ATT-GTGCCAAAAT------A--T--A---G--AA--AAC--AGTTCAAA-AC---A--G-----TGTATAGG-ACAACT-TTGAAAATTAG-TTTCAGC-ATTG-TAAA-TA-A----ATTTTAGG-TT-CTAATTGTAAATTT----GAAA-ACTTCAGATATAT-ATAcagtctccattgttttaataaggacaagcctacccaatgctaaaattaaagccaaaattgtgccaaaatatagaaaacagttcaaaacagtgtataggacaactttgaaaattagtttcagcattgtaaataaattttaggttctaattgtaaatttgaaaacttcagatatatatactttaaaaaaaatcaact
gi|13 : gttttcaggaattttgacccccagcaaggatgaccctaaacagtctccattgttttaataaCTTAAATA-ATCACAAAATAATAATCACAGCTTATA--CTGT--C----AG-CCGTGTAAA------TGAGTGAGCTATTC-TAAGCACAGG----TAATAT---ATTAA-TAT--GAAC---CA----GTT-TTCAAAAG-CA-------TGAAACAGGTCCACTAAAAT-------TTATAGTT--T-TTTT-CGTGAATTTCTACGCCAAGGTAGAAATGCCT-CT--A------------------AAA-TTGT--T-CCTTTAAGATTGAAATGT-------T----TGA-AAAA-T-------ATC--GAAAAAGATC---T---ctttaaaaaaaatcaact
gi|15 : aGGAA-AT---G--G-----T----AGG-CCAACT-TTGAAGGTTAA-TTTTAAC-ATTG-TAAATTA-A-TTGATTATCGG-TTGGAAATCG-AAATATC---AAAA-CATTCATA-ACAT-GTA-G-------------TGTATGCCAGAAAATAG---CGAAAA-GAAA------C--TTAAT--AC----G-TG-TACC--AA-AT-TATCTTT---T-C-GAA---AAAC---TGTTTT-CCCGTATTT-GTCCTTT-t
gi|16 : TTA-AAATGTGTGGCACGAGGCACATCCGAACCA--TGACAAAATCACCGT-GCAAC--GTATTCTG-C-C----AG--GGTGCAGT------TGACTGAGC
gi|17 : tttatttaaaaaatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttatgagtatgaaaaaaagttgaaattgcaaaagaaaacaACCATCACAGC--ATA--TACTGTC----AG-TGGTGCAGC----------TGAGCTATTC-TA--CACA----------------TAAG-TAT-----------------T-TACAAAAT-TA-------T-----------------------------------AT-TTTT-CAAGAATTTCAATTCCTAGGCATGGTTGCCT-CT--AAGAATA--T-ATTATGGCAAA-TTGT--T-T--TTGAAATTGTAACC------TAT----CAA-
gi|18 : taATCATAGG-TT------CA-AAATTT----AAAA-AA---AAGTCTAT-GTATA-------------TGTACAACAGAAA-TA--------AA-GAAA------C--ATGATCTAA----A-TT-CACA--AT-GT-GACTTTT---T-CCGGA---AAATAAATCTTTT-CTTTT-GTT-ACCCT
gi|19 : acGGATTTAGACTCCAAAGCAGGTATGCCC-CT--AAAAC-C--T-GTTATTGTAAACTTGT--T-C--GT-AGATTGTAAC--------------CAA-CCAA-TATATCAA-----AAAGAAAATCTTAT---GGGCAGACAG----GCCTTGA----AACTTATT----TCAAAGCaaattgaccctttcc
gi|2 : TTTTTTTTTTACA----TTTGAACT----TGCATCTTAACTAGATTACAGAAGGAAAATCACAGC--ATA--CAGTG------AA-CAGTGTAGCC----CTGA--GAGCTACTCCTTAGTACAAG----ACCCGT---ATAAA-TAT--AAAC---CAC---GTC-TACAAAAA-CA-------T------------------T-------TTTTGGTCGGT-TTTT-CGTGAATTTCGACCCCAAGGCTGAGGTGTCC-CT--AAAA--A--T-ACTATAATAAA-TTGT--T-C--GTAAGTTTGCAACTTA---ATAT----TAATACAATT-T-TTAAATTA-AAAAAAAATC---T---AGG--GACAGGTCTGTTTTGA----AA--GATT----TCAAAGTCAAA--ATTCATGTCAAAAT------C--TAAA---TCAAA--AAA--TGGGGAAA-AT---G--G-----T----AGG-CCAACT-TTGAAGGTTAA-TTTTAAC-ATTG-TAAA-TA-A-TTGATTATCGG-TTGGAAATCG-AAATAT----CAAA-CATTCAAATACAT-GTATG-------------TGTATGCCAGAAAATAG--CGA--AA-GAAA------C--TTAAT--AC----G-TG-TACC--AA-AT-TACTTTT---T-C-GAA---AAAC---TGTTTT-CCCGT-ATTGGTCCTTT-CTTATTt
gi|20 : TTAAAAGAGTGTTGCGTGAGGCAGATTCAAAGCA--TGGCAAAAA-ATAATCACAGC--ATA--TA
gi|3 : taattaaataagatatgaaaaagtgttgaaatgcgaaataaaaaaAGCC----CTGAA-GAGCTACTCCTTAGTACAAG----ACCCGTT--ATAAA-TAT--AAAC---CAC---GTCCTACAAAAA-CA-------T------------------T-------TTTTG-TCGGT-TTTTTCG-GAATTTCGACCCCAAGGTGAGGTTGTCC-CG--AAAA--ATTT-ACTATCA-AAA-TTGTGGTGC--GTAAG-TTGCAAACTAC--ATATAATACAA-AAAT-T-T-TTAAATTAAAAAAAAAACC---TATAAGG--AACA-GTCTGTTTTGAAT--AG--GATT----TCAAAGTCAAAAGATTCATGTCAAAAT------C--T--AAATC--AA--AAAATTGGGGAAA-AT---G--GAAGA-T----AGGACCAACTATTGAGAGTTAATTTTTAACAATTGATAAA-TA-ATTTGATTATCGG-TG-GAAATCG-AAATAT----CAAA-CATTCATA-ACAT-GTAGG-------------TGTATGCCAGAAAATAG---CG--AA-GAAAGAAACCT--TTAATC-AC----GTTGTTACC--AA-AT-TACCTTT---T-C--GA---AAAC---TGTTTTCCCCGT-ATT-GTCCTTT-CTTATTaat
gi|4 : acagtgttataC--ATG--CAGTAAC----AG-CAGTGCAGC------TAACTGAGCTATCT-TAAGCACA---------CGTTGAACAAGGTATTCGAAC-----A---GTT-T----AAA-CA-------G------------------T-------TT-----CCCT-TTTT-CGTGAATTTCGACCTCAAGGCAGGGGTGCCCGTT--TAAA--A--T-ACTATTGTAAA-TT-T--T-C--TGATGATTGTACTCTA------T----CAA-G--A-T-------ATC--CAAACAAATC---T---TAGT-GACAGACCTTTCTTAA----AG--GAAT----TCAAATCCCAA--ATTCATTTCAAAAT------CGGT--G---T--TT--AGA--TGGAGGAA-ATTCCG--ACT---T----A-G-CCAACT-TTGAAGATCAT-TATCAAC-ATTG-CAGA-CA-A-TTCGTAATA------AAAA--G-AAATAC----GGAA--ATTCA-AT------TATA-------------TGTACGACTGAAAATAA--CT----------------CTTTTGAT--ATCACAG-TG-T--C--AT-GT-TATGTTT---C-A-GGA---AAAT---TGTTCT-CCCCT-TTT-GCTCTTTACTTtctttcttcttttttttt
gi|5 : TGCAGC------TGACTGAGGTACCC-CAAGAACAAGTTATATCTGT---GTTAA-TAT--GAAC---CAA---ATT-TTAAATAA-CAGATTCCCTAA----------------T-------TTTTAATCGATGTCTT-CGTGAATTTCGACCCCAAGACAGGTGTTCCC-CTTAAAAA--G--T-GCTATTGTAAA-TTCT--T-T--ATTAGATTGTAATCTA------T----CCA-A--A-T-------ATC--AAAATAATTC---TT--AAG--GACATGCCTGTCTTGA----AG--GACT----TCAAAGAAAAA--GGTTATGTCAAA------------------------------TGGG-AAA-AT---GCTGCT---T----ATG-CCAACT-TTGAAGGTTAA-CTTCAAC-ATTG-TAGA-TA-A-TAAATTACAGGTTT-GGAATGA-AAATAT----GAAA------AAAT-CAT-ATGTA-------------TGTACGACTGAAAATTA--CCA--AA-GAAA------C--TTG-----C----C-TA--ACT--AA-GC-GACTTTT---T-T-CGA---Atgtgacattgatcttttt
gi|6 : GT---ATAAA-TAT--GAAC---CAGCAGGTT-TGTAAAAA-----------------------------T-------CTTTG-TCGGT-TTTT-CGTAGATTTCGACCC-ATGGCAGTATTACCC-TT--AGAA--A--T-ACTACTGTAGA-TTGT--T-C--TCAAGATTGTAACC------TAT----CAA---AA-T-------ACC--AAAACAAATCT--T---GGG--GGCAAGTCTGCCTTAATTATAG--GACT----TTAAGGCCAAA--ATCTATGTCATAATTGGTGCT--T--A---T--------A--TGGGGAAACAC---T--G-----T-------------T-TT-----TTAA-TTTCAAC-A-----------------ATTATAGATTT-AAAATGA-AAATATGAAGAAAA-CG-TCATATACAT-GTATATATGTATGTACACTGTACGTCAGGAAATAA--TTC--AA-GAAT------C--TTG-----C------TT-TAAC--AATGC-GACATTTCCCC-C-GGA---AATA---TGTTCT-CCtaagaggtattttagtttgttaccctaaattgatct
gi|7 : actgAAAAATGTTGCCTAAGGTGGATTCGAACCA--TGGTAAAAT-ATAACCACAAC--ATA--TACTA-C----CGACGGTGTAGACGTGGCTGACTGAGCT---------CATAAT----ACTCAT---TTAAA-TAT--CAA----CAG---ATC-CCCCA-----A-------T------------------T-------T----GTCGGT-TTCC-CGTGAAATTCGAATCCAAGACAGGgcagtagatgtttccttttgttacctgatttgatcttt
gi|8 : tcttttggtcgcacatgtgcttccgtcgaattacgcagaatggaagataatagatcgcccatggcgaggatggttctttttaactgcatttggtagaaaattacaattttgaagcattttatatgaagaatggacataatttaaactaatcattggagaaatatacatatgtagtgtatgacaaaaagtgttggaaatgcgaaataaaaataagactTTTTGTTTTTACAAAAGTGTGGAATGAAGTGGATTCAAACT--ATGACAAAAGTAC--TCGCATT--ATA--TTCTG-CT---AA-CAGTACAA------CTGACTGAACTATTC-TAAACACAAGTAACACCCGT---GAAAA-TAT--GAAC---CAG---GTT-TTCAAAAAGAA-------T------------------TCCCAATATTTTTGTCAGT-TTTT-TATAACTTTTGACTCCAGGGCAGGGATGTCC-AT--AAAA--A--T-GTTATTG-AA--------T-A--TCAAAA---TA----A---AT-------AA-ACAA-A-T---AAA-T--AAACAAA----------GGG--GACAGG-CTGCCTTGA----TG--GACT----TAGAAG---------TAATGTTAAAAT------C--T--A---T--atta
gi|9 : ttaaactggtttattaaaagagaattatacacataattacgcaaaagtgtcgaaaatgcaaaatataaCGGG-TTTT-CTTCAAATTTAACTCCAAGGCAAGGGTACCT-CT--AGAG--A------------AAA--------------AAAA----AACCCA---ATAG----AAT-ACAA-C-C-T---AT-------ATATTC---TTA-GGG--GGCACGCCTG------------------------AAAGCCA------TC---TCCAAAT------C--T--T---T--ACTTAAA--TGGGGAAA--T---A--GCTCTTT----AGG-CCAACT-TTGAAGGTTAG-TTTAAAC-ATTA-TGGA-TATATTAGATTATAAG-TT-----TCG-AAATAA----AGAATCGTTGAAA---AT-TCACG-------------TGTACGACGGAA-------CTG--AA-GAAA------T--TTGAT--A----------TAAC--AATGT-GCCTTTT---T-C-AGATACAGAT---C-TTTT-C
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|14 ): TTTTTCGCCGTGGCAGACGTGCTCCCGTCGTGTAAAGCAGAATGAATGATGATTATTGTCTTGAGGGGGAAACTATCTGAGTTCTTTTGTAATACATTTTATATAAAAATGGATATGCATTTAAACTAAATTCAAATGTGAAATAAAAGATAACAATGAAAGTGTGGCTTGAGGCGGATTCAAAC
Unaligned ( gi|21 ): ATAACAATGTGACTTTTTCAATGGTATTTTCTTTTGTTACCCTGAATTGATCCCTTTCCTCGAAATCTT
Unaligned ( gi|22 ): GATCTTATAACAATCGTGATTTTTCACATTGGTAAATTTTCTTTTGTTACCCTGAATTGATCCTTTCC
Unaligned ( gi|23 ): ACAATATGACTATTTCTGGGAAATTGTTTTCTCTTAGAAATGTTTTCTTTTGTTACTCTGAATTGAT
Alignments
lowQualScore : 1111 111 11111 22222 44444444444 333333333333333333 1111 888888888888888888888888888888888888888888888888888 1111111 11111 6666666666666666666666666666666666 22222222 22222222 9999999999999999999999999999999999999999999999999999999999 1111 111111 111111 111 1111 222222222222222 22222222 111111 3333333333333333333333 11111 1
lowQualScore : 1 8 5 1 1 1 0 2222 999 55555 66 555 66666 5 777 00000000000 33 1 8 111111111111111111 77 0 8888 4 1 111111111111111111111111111111111111111111111111111 0 3 3 2 1 3 3333333 0 3 2 0 33 2 11111 6666 1 0000000000000000000000000000000000 666 1 77777777 44 2 2 0 2 11111111 7777 0 55 3 0000000000000000000000000000000000000000000000000000000000 4 4 4 4 4 0 4 4 2222 777777 22 3 3 111111 000 2222 3 777777777777777 2 77777777 4 111111 55 2222222222222222222222 8 44 1 33333 777 777 5 77 6 0
lowQualScore : . . . . . . . .... ... ..... .. ... ..... . ... ........... .. . . .................. .. . .... . . ................................................... . . . . . . ....... . . . . .. . ..... .... . .................................. ... . ........ .. . . . . ........ .... . .. . .......................................................... . . . . . . . . .... ...... .. . . ...... ... .... . ............... . ........ . ...... .. ...................... . .. . ..... ... ... . .. . .
lowQualScore : 0 8 7 0 7 4 4 1111 444 55555 11 888 55555 0 888 77777777777 22 7 9 999999999999999999 99 7 1111 0 0 333333333333333333333333333333333333333333333333333 5 1 1 9 0 1 8888888 7 4 9 7 99 9 11111 1111 6 6666666666666666666666666666666666 555 4 77777777 66 3 9 8 3 55555555 1111 2 00 5 5555555555555555555555555555555555555555555555555555555555 0 0 0 0 0 5 0 0 4444 666666 66 6 6 111111 666 2222 6 222222222222222 4 77777777 0 555555 55 9999999999999999999999 0 66 0 99999 000 888 0 77 7 0
consensus : TTTTNTTTTTACAAAAGTGTGG-CNTGAGGCGGATTCGA----ACCA-ATGGCAAAATAACAATCGCAGC--ATATANTG-C--AG-CGGTGC---AG-C----C----TGACTGAGCTATTC-TAAGCAC--------AAG----ACCCGT-ATAAATATGAACCAG---GTT-TNCAAA-------AACA-------T------------------T-------TTTTG-TCGGT-TTTT-CGTGAATTTCGACCCCAAGGCAGG-GNTGCCC-CTAAAA--A--T-ACTATTGTAAA-TTGT--T-C--T--TAAG----ATTGTAACCTA---ATAT----CAA-A-A-A---TTAAATC--AAAA--AAAATC---T---GGG--GACAGGCCTGCCTTGA----AG--GACT----TCAAAGCCAAA--ATTCATGTCAAAAT------C--T--A---T--AA--AAA--TGGGGAAA-AT---G--G-----T----AGG-CCAACT-TTGAAGGTTAA-TTTCAAC-ATTG-TAGA-TA-A-TNGATTATAGG-TT-GAAATCG-AAAT-AT-G----AAACATTCANATACAT-GTATG-------------TGTACGNCAGAAAATAG--CCG--AA-GAAA------C--TTGA--T-AC----G-TG-TACC--AA-GT-TACNTTT---T-CGGA---AAAT---TGTTTT-CCCGT-NTT-GTCCTTT-CTTATT
Reference ( family-668 ) : TTTTNTTTTTACAAAAGTGTGG-CNTGAGGCGGATCCGA----ACCA-ATGACAAAATNACAATCGCAGC--ATACAGTG-C--AG-CGGTGC---AG-C----C----TGACTGAGCTACTC-TAAGCAC--------AAG----ACCCGT-ATAAATATGAACCAG---GTT-TNCAAA-------AACA-------T------------------T-------TTTTGGTCGGT-TTTT-CGTGAATTTCGACCCCAAGGCAGG-GNTGCCC-CTAAAA--A--T-ACTATTGTAAA-TTGT--T-C--T--TAAG----ATTGTAACCTA---ATAT----CAA-A-A-A---TTAAATC--AAAA--AAAATC---T---GGG--GACAGGCCTGCCTTGA----AG--GACT----TCAAAGCCAAA--ATTCATGTCAAAAT------C--T--A---T--AA--AAA--TGGGGAAA-AT---G--G-----T----AGG-CCAACT-TTGAAGGTTAA-TTTCAAC-ATTG-TAGA-TA-A-TNGATTATAGG-TT-GAAATCG-AAAT-AT-G----AAACATTCANATACAT-GTATG-------------TGTACGNCAGAAAATAG--CCG--AA-GAAA------C--TTGA--T-AC----G-TG-TACC--AA-GT-TACNTTT---T-CGGA---AAAT---TGTTTT-CCCGT-NTT-GTCCTTT-CTTATT
gi|1 : AAAATTGTGG-TGCGAGTCGGATTCGATTCGAACT-ATGGCAAAA-AGTTATCGCAAC--ATAAAATT-CTAAT-CGCTGCTTCAA-C----TCCTATAGCGGTGC-ATTC-TAAGCACTCAAATGTAAT----ACTGGT-ATAAATATGAACCAGCAGGTT-TGTAAA-------AA----------------------------T-------CTTTG-TCGGT-TTTT-CGTAGATTTCGACCC-ATGGCAGT-ATTACCC-TTAGAA--A--T-ACTACTGTAGA-TTGT--T-C--T--CAAG----ATTGTAACC------TAT----C-A-A-A-A---T---ACC--AAAA--CAAATCT--T---GGG--GGCAAGTCTGCCTTAATTATAG--GACT----TTAAGGCCAAA--ATCTATGTCA
gi|10 : tgtccttccgccgagtaacacagtatgaatgattaatgtccttggaagaaatataccacgattaatgactgcttaaattgtataatatcactgaatgtcttttgtgtagagtaaactagattatggaaggaagatacatgtatgtagatatttatataagatacaaaaaaaaaacaacgtgttgaaggtgggaaatagaagtT-TTTT-GGTGAAAGTCTTCCCCAGGGCAAG-GATGTTC-CTGAAA--G--TCACC--TGTAAA-TTTT--T-C--T--TAAG----CTTGCAACCTACCAGTAT----CAA-A-A------TA--TC--ATAA------TT---T----------CAGGTCTACCCT-A----AT--GACT----TCAAAGTCAA----------TTACAAT------G--T--A---G--AA--AAA----------------------------------CTAACT-CTAAAGATTGA-TTTCAGC-ATTG-CAAA-TA-A-TAAATTGTAAT-TT-TAAA-----------------AAAAATTTAA--ACAT-ACA-----------------CACGGCAAATAATAA--TCC--AGTGAAA------C--TTGA--T-AT----A--G-CAACGGAA-AT-T-CATTT------GGT---AAAT---TG-TTC-CCCGT-TTT-CTCTTt
gi|11 : aatttatttatctatA-TTGT--T-C-------AG----AATGTAATATA---A-------CAA-A-ATA---TCGAG----AGAG--AAAATC---TT--AAA--GGCTGGCCTGTCTTG---------GACT----TTCCAGCCAAA--ATTCACGTCAAAGT------T--T--A--------------------------------------------GG-TCAACT-TTGAAGGTTAT-TTTCATC-ATTG-TAGA-TT-A-TAAATTGTAGG-T------TCG---AT-AT-G----AAA-ATTCATATATACAGTGTA-------------TTTA---CAGAAAA-AGAACTG--AA-CAAA------C--TTGA--T-AT----G----------AA-ATGTATTTTT---TACGGA---AAAT---Tgttaccctaaattgat
gi|12 : -TTTT-CAGGAATTTTGACCCCCAG-CAAG-GATGACC-CTAAA----------CAGTCTCCA-TTGT--T-T--TAATAAGGACAAGCCT-ACCCA---ATG-----CTA-A-A-A---TTAAAGC--CAAA--Actggggcattcatatttctt
gi|12 : gG--GACAAGCCTACCC--A----AT--G-CTAAAATTAAAGCCAAA--ATT-GTGCCAAAAT------A--T--A---G--AA--AAC--AGTTCAAA-AC---A--G-----TGTATAGG-ACAACT-TTGAAAATTAG-TTTCAGC-ATTG-TAAA-TA-A----ATTTTAGG-TT-CTAATTGTAAAT-TT-G----AAAACTTCAGATATAT-ATAttgtgccaaaatatagaaaacagttcaaaacagtgtataggacaactttgaaaattagtttcagcattgtaaataaattttaggttctaattgtaaatttgaaaacttcagatatatatactttaaaaaaaatcaact
gi|13 : gttttcaggaattttgacccccagcaaggatgaccctaaacagtctccattgttttaataaA-ATCACAAAATAATAATCACAGCTTATACTGT--C--AG-CCGTGT---AA-A---------TGAGTGAGCTATTC-TAAGCAC--------AGG----TAATAT-ATTAATATGAACCA----GTT-TTCAAA-------AGCA-------TGAAACAGGTCCACTAAAAT-------TTATAGTT--T-TTTT-CGTGAATTTCTACGCCAAGGTAGA-AATGCCT-CTA------------------AAA-TTGT--T-CCTT--TAAG----ATTGAAAT------GTTT----GAA-A-A-A---T---ATC--GAAA--AAGATC---T---ctttaaaaaaaatcaact
gi|14 : acttaaatAAAGTGTGG-CTTGAGGCGGATTCAA----ACt
gi|15 : tttttcgccgtggcagacgtgctcccgtcgtgtaaagcagaatgaatgatgattattgtcttgagggggaaactatctgagttcttttgtaatacattttatataaaaatggatatgcatttaaactaaattcaaatgtgaaataaaagataacaatgGGAA-AT---G--G-----T----AGG-CCAACT-TTGAAGGTTAA-TTTTAAC-ATTG-TAAATTA-A-TTGATTATCGG-TTGGAAATCG-AAAT-ATCA----AAACATTCATA-ACAT-GTA-G-------------TGTATGCCAGAAAATAG---CGAAAA-GAAA------C--TTAA--T-AC----G-TG-TACC--AA-AT-TATCTTT---T-CGAA---AAAC---TGTTTT-CCCGTATTT-GTCCTTT-
gi|16 : TTA-AAATGTGTGG-CACGAGGCACATCCGA----ACC--ATGACAAAATCACCGT-GCAAC--GTATTCTGCC--AG--GGTGC---AG------T----TGACTGAGC
gi|17 : tttatttaaaaaatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttatgagtatgaaaaaaagttgaaattgcaaaagaaaacaTAACCATCACAGC--ATATACTGTC--AG-TGGTGC---AG-C-------------TGAGCTATTC-TA--CAC--------A--------------TAAGTAT------------T-TACAAA-------ATTA-------T-----------------------------------AT-TTTT-CAAGAATTTCAATTCCTAGGCATG-GTTGCCT-CTAAGAATA--T-ATTATGGCAAA-TTGT--T-T--T--TGAA----ATTGTAACC------TAT----CAA-
gi|18 : ATCATAGG-TT------CA-AAAT-TT-A----AAAAA---AAGTCTAT-GTATA-------------TGTACAACAG-AAATA--------AA-GAAA------C--ATGATCT-AA----A-TT-CACA--AT-GT-GACTTTT---TCCGGA---AAATAAATCTTTT-CTTTT-GTT-ACCCT
gi|19 : acGGATTTAGACTCCAAAGCAGG-TATGCCC-CTAAAAC-C--T-GTTATTGTAAACTTGT--T-C--G--T-AG----ATTGTAACC-A-----AC----CAA----------TATATC--AAAAAGAAAATCTTAT---GGGCAGACAG----GCCTTGA----AACTTATT----TCAAAGCaaattgaccctttcc
gi|2 : TTTTTTTTTTACA----TTTGAACTTG---C--ATCTTA----ACTAGATTACAGAAGGAAAATCACAGC--ATACAGTG----AA-CAGTGT---AG-C----CC---TGA--GAGCTACTCCTTAGTAC--------AAG----ACCCGT-ATAAATATAAACCAC---GTC-TACAAA-------AACA-------T------------------T-------TTTTGGTCGGT-TTTT-CGTGAATTTCGACCCCAAGGCTGA-GGTGTCC-CTAAAA--A--T-ACTATAATAAA-TTGT--T-C--G--TAAG----TTTGCAACTTA---ATAT----TAATACA-ATTTTTAAATTA-AAAA--AAAATC---T---AGG--GACAGGTCTGTTTTGA----AA--GATT----TCAAAGTCAAA--ATTCATGTCAAAAT------C--TAAA---TCAAA--AAA--TGGGGAAA-AT---G--G-----T----AGG-CCAACT-TTGAAGGTTAA-TTTTAAC-ATTG-TAAA-TA-A-TTGATTATCGG-TTGGAAATCG-AAAT-AT-C----AAACATTCAAATACAT-GTATG-------------TGTATGCCAGAAAATAG--CGA--AA-GAAA------C--TTAA--T-AC----G-TG-TACC--AA-AT-TACTTTT---T-CGAA---AAAC---TGTTTT-CCCGT-ATTGGTCCTTT-CTTATTt
gi|20 : TTAAAAGAGTGTTG-CGTGAGGCAGATTCAA----AGCA--TGGCAAAA-AATAATCACAGC--ATATA
gi|3 : taattaaataagatatgaaaaagtgttgaaatgcgaaataaaaaa-C----C----TGAA-GAGCTACTCCTTAGTAC--------AAG----ACCCGTTATAAATATAAACCAC---GTCCTACAAA-------AACA-------T------------------T-------TTTTG-TCGGT-TTTTTCG-GAATTTCGACCCCAAGGTGAG-GTTGTCC-CGAAAA--ATTT-ACTATCA-AAA-TTGTGGTGC--G--TAAG-----TTGCAAACTAC--ATATAATACAA-A-A-ATTTTTAAATTAAAAAA--AAAACC---TATAAGG--AACA-GTCTGTTTTGAAT--AG--GATT----TCAAAGTCAAAAGATTCATGTCAAAAT------C--T--AAATC--AA--AAAATTGGGGAAA-AT---G--GAAGA-T----AGGACCAACTATTGAGAGTTAATTTTTAACAATTGATAAA-TA-ATTTGATTATCGG-TG-GAAATCG-AAAT-AT-C----AAACATTCATA-ACAT-GTAGG-------------TGTATGCCAGAAAATAG---CG--AA-GAAAGAAACCT--TTAA--TCAC----GTTGTTACC--AA-AT-TACCTTT---T-C-GA---AAAC---TGTTTTCCCCGT-ATT-GTCCTTT-CTTATTaat
gi|4 : acagtgttataagcC--ATGCAGTAAC--AG-CAGTGC---AG-C---------TAACTGAGCTATCT-TAAGCAC--------A---------CGT--------TGAACAAG---GTA-TTCGAACAGTTTAAACA-------G------------------T-------TT-----CCCT-TTTT-CGTGAATTTCGACCTCAAGGCAGG-GGTGCCCGTTTAAA--A--T-ACTATTGTAAA-TT-T--T-C--T--GATG----ATTGTACTC------TAT----C-A-A-G-A---T---ATC--CAAA--CAAATCT--T---AGT--GACAGACCTTTCTTAA----AG--GAAT----TCAAATCCCAA--ATTCATTTCAAAAT------CGGT--G---T--TT--AGA--TGGAGGAA-ATTCCG--ACT---T----A-G-CCAACT-TTGAAGATCAT-TATCAAC-ATTG-CAGA-CA-A-TTCGTAATA------AAAA--G-AAAT-AC-G----GAA-ATTCA-AT------TATA-------------TGTACGACTGAAAATAA--CT----------------CTTTTGA--T-ATCACAG-TG-T--C--AT-GT-TATGTTT---C-AGGA---AAAT---TGTTCT-CCCCT-TTT-GCTCTTTACTTtctttcttcttttttttt
gi|5 : TGC---AG-C---------TGACTGAGGTACCC-CAAGAAC--------AAGTTATATCTGT-GTTAATATGAACCAA---ATT-TTAAAT-------AACAGATTCCCTAA----------------T-------TTTTAATCGATGTCTT-CGTGAATTTCGACCCCAAGACAGGTGTTCCCC-TTAAAA--AG-T-GCTATTGTAAA-TTCT--T-T--A--TTAG----ATTGTAATCTA------T----CCA-A-A------TA--TC--AAAA--TAATTC---TT--AAG--GACATGCCTGTCTTGA----AG--GACT----TCAAAGAAAAA--GGTTATGTCAAA------------------------------TGGG-AAA-AT---GCTGCT---T----ATG-CCAACT-TTGAAGGTTAA-CTTCAAC-ATTG-TAGA-TA-A-TAAATTACAGGTTT-GGAATGA-AAAT-AT-G----AAA-----AAAT-CAT-ATGTA-------------TGTACGACTGAAAATTA--CCA--AA-GAAA------C--TTG------C----C-TA--ACT--AA-GC-GACTTTT---T-TCGA---Atgtgacattgatcttttt
gi|6 : GT-ATAAATATGAACCAGCAGGTT-TGTAAA-------AA----------------------------T-------CTTTG-TCGGT-TTTT-CGTAGATTTCGACCC-ATGGCAGT-ATTACCC-TTAGAA--A--T-ACTACTGTAGA-TTGT--T-C--T--CAAG----ATTGTAACC------TAT----C-A-A-A-A---T---ACC--AAAA--CAAATCT--T---GGG--GGCAAGTCTGCCTTAATTATAG--GACT----TTAAGGCCAAA--ATCTATGTCATAATTGGTGCT--T--A---T--------A--TGGGGAAACAC---T--G-----T-------------T-TT-----TTAA-TTTCAAC-A-----------------ATTATAGATTT-AAAATGA-AAAT-AT-GAAGAAAACG-TCATATACAT-GTATATATGTATGTACACTGTACGTCAGGAAATAA--TTC--AA-GAAT------C--TTG------C------TT-TAAC--AATGC-GACATTTCCCC-CGGA---AATA---TGTTCT-CCtaagaggtattttagtttgttaccctaaattgatct
gi|7 : actgAAAAATGTTG-CCTAAGGTGGATTCGA----ACCA--TGGTAAAAT-ATAACCACAAC--ATATACTA-C--CGACGGTGT---AGACGTGGC----TGACTGAGCT---------CAT--------AAT----ACTCAT-TTAAATATCAAC-AG---ATC-CCCCAA----------------------------------------------TTTG-TCGGT-TTCC-CGTGAAATTCGAATCCAAGACAGG-ATTgcagtagatgtttccttttgttacctgatttgatcttt
gi|8 : tcttttggtcgcacatgtgcttccgtcgaattacgcagaatggaagataatagatcgcccatggcgaggatggttctttttaactgcatttggtagaaaattacaattttgaagcattttatatgaagaatggacataatttaaactaatcattggagaaatatacatatgtagtgtatgacaaaaagtgttggaaatgcgaaataaaaataagactTTTTGTTTTTACAAAAGTGTGG-AATGAAGTGGATTCAA----ACTA--TGACAAAAGTAC--TCGCATT--ATATTCTG-CT-AA-CAGTAC---AA-C---------TGACTGAACTATTC-TAAACAC--------AAGTAACACCCGT-GAAAATATGAACCAG---GTT-TTCAAA-------AAGAA------T------------------TCCCAATATTTTTGTCAGT-TTTT-TATAACTTTTGACTCCAGGGCAGG-GATGTCC-ATAAAA--A--T-GTTATTG-AA--------T-A--T--CAAA----A---TA----A---ATA------AA-C-A-A---ATAAAT---AAAC--AAA----------GGG--GACAGG-CTGCCTTGA----TG--GACT----TAGAAG---------TAATGTTAAAAT------C--T--A---T--a
gi|9 : ttaaactggtttattaaaagagaattatacacataattacgcaaaagtgtcgaaaatgcaaaatataaCGGG-TTTT-CTTCAAATTTAACTCCAAGGCAAG-GGTACCT-CTAGAG--A------------AAA----------------AAA----A----AACCCA---AT--------A-G-A-A---TACAACC---TAT--ATATTC---TTA-GGG--GGCACGCCTG------------------------AAAGCCA------TC---TCCAAAT------C--T--T---T--ACTTAAA--TGGGG-AA-AT---A--GCTCTTT----AGG-CCAACT-TTGAAGGTTAG-TTTAAAC-ATTA-TGGA-TATATTAGATTATAAG-TT-----TCG-AAATAAA-G----AATCGTTGAAA---AT-TCACG-------------TGTACGACGGAA-------CTG--AA-GAAA------T--TTGA--T-A----------TAAC--AATGT-GCCTTTT---T-CAGATACAGAT---C-TTTT-C
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|21 ): ATAACAATGTGACTTTTTCAATGGTATTTTCTTTTGTTACCCTGAATTGATCCCTTTCCTCGAAATCTT
Unaligned ( gi|22 ): GATCTTATAACAATCGTGATTTTTCACATTGGTAAATTTTCTTTTGTTACCCTGAATTGATCCTTTCC
Unaligned ( gi|23 ): ACAATATGACTATTTCTGGGAAATTGTTTTCTCTTAGAAATGTTTTCTTTTGTTACTCTGAATTGAT
Alignments
lowQualScore : 1111 111 11111 111111 5555555555555555555 33333333 222222222 111111111 77777777777777777777777777777777777777777777777 1111111 11111 55555555555555555555555555555555 22222222 22222222 99999999999999999999999999999999999999999999999999999999 1111 1111111 111111 111 1111 222222222222222 22222222 111111 3333333333333333333333 11111 1
lowQualScore : 1 8 5 1 1 0 2222 999 44444 222222 1 1111111111111111111 5 44444444 2 0 99 444444444 77 0 111111111 4 1 66666666666666666666666666666666666666666666666 3 444 3 3 2 1 3 3333333 0 3 2 0 33 2 11111 6666 1 99999999999999999999999999999999 0 44 666 44 77777777 44 2 2 0 2 11111111 7777 0 55 3 00000000000000000000000000000000000000000000000000000000 4 4 4 4 4 0 4 4 2222 7777777 22 3 3 111111 000 2222 3 777777777777777 2 77777777 4 111111 55 2222222222222222222222 8 44 1 33333 777 777 5 77 6 0
lowQualScore : . . . . . . .... ... ..... ...... . ................... . ........ . . .. ......... .. . ......... . . ............................................... . ... . . . . . ....... . . . . .. . ..... .... . ................................ . .. ... .. ........ .. . . . . ........ .... . .. . ........................................................ . . . . . . . . .... ....... .. . . ...... ... .... . ............... . ........ . ...... .. ...................... . .. . ..... ... ... . .. . .
lowQualScore : 0 8 7 0 7 4 1111 444 99999 888888 0 5555555555555555555 0 77777777 5 3 77 888888888 99 7 555555555 0 0 33333333333333333333333333333333333333333333333 6 888 1 1 9 0 1 8888888 7 4 9 7 99 9 11111 1111 6 22222222222222222222222222222222 1 22 555 88 77777777 66 3 9 8 3 55555555 1111 2 00 5 55555555555555555555555555555555555555555555555555555555 0 0 0 0 0 5 0 0 4444 6666666 66 6 6 111111 666 2222 6 222222222222222 4 77777777 0 555555 55 9999999999999999999999 0 66 0 99999 000 888 0 77 7 0
consensus : TTTTNTTTTTACAAAAGTGTGG-CNTGAGGCGGATTCGA----ACCA-ATGGCAAAATAACAATCGCAGCATA------TACT----G-C------------AG-CGGTGCAG-C----C-TGACTGAGCTACTC-TAAGCACAAG----ACCCGT-ATAAATATGAAC---CAG---GTT-TNCAAA-------AA-------CA----------T--------TT--------TTTG-TCG-G-T-TTTTCG-TGAATTTCGACCCCAAGGCAGG-GNTGCCC-CTAAAA--A--T-ACTATTGTAAA-TTGT--T-C--T--TAAG----ATTGTAACCTA---ATAT----CAA-A-A-A---TT---AAATC--AAAA--AAAA-TC---T---GGG--GACAGGCCTGCCTTGA----AG--GACT----TCAAAGCCAAA--ATTCATGTCAAAAT------C--TA---T--AA--AAA--TGGGGAAA-AT---G--G-----T----AGG-CCAACT-TTGAAGGTTAA-TTTCAAC-ATTG-TAGA-TA-A-TNGATTATAGG-TT-G-AAATCG-AAAT-AT-G----AAACATTCANATACAT-GTATG-------------TGTACGNCAGAAAATAG--CCG--AA-GAAA------C--TTGA--T-AC----G-TG-TACC--AA-GT-TACNTTT---T-CGGA---AAAT---TGTTTT-CCCGT-NTT-GTCCTTT-CTTATT
Reference ( family-668 ) : TTTTNTTTTTACAAAAGTGTGG-CNTGAGGCGGATTCGA----ACCA-ATGGCAAAATAACAATCGCAGCATA------TANT----G-C------------AG-CGGTGCAG-C----C-TGACTGAGCTATTC-TAAGCACAAG----ACCCGT-ATAAATATGAAC---CAG---GTT-TNCAAA-------AA-------CA----------T--------TT--------TTTG-TCG-G-T-TTTTCG-TGAATTTCGACCCCAAGGCAGG-GNTGCCC-CTAAAA--A--T-ACTATTGTAAA-TTGT--T-C--T--TAAG----ATTGTAACCTA---ATAT----CAA-A-A-A---TT---AAATC--AAAA--AAAA-TC---T---GGG--GACAGGCCTGCCTTGA----AG--GACT----TCAAAGCCAAA--ATTCATGTCAAAAT------C--TA---T--AA--AAA--TGGGGAAA-AT---G--G-----T----AGG-CCAACT-TTGAAGGTTAA-TTTCAAC-ATTG-TAGA-TA-A-TNGATTATAGG-TT-G-AAATCG-AAAT-AT-G----AAACATTCANATACAT-GTATG-------------TGTACGNCAGAAAATAG--CCG--AA-GAAA------C--TTGA--T-AC----G-TG-TACC--AA-GT-TACNTTT---T-CGGA---AAAT---TGTTTT-CCCGT-NTT-GTCCTTT-CTTATT
gi|1 : AAAATTGTGG-TGCGAGTCGGATTCGATTCGAACT-ATGGCAAAA-AGTTATCGCAACATAAAATTCTAATCGCTG-CTTCAACTCCTATAG-CGGTGCA-------T-T--CTAAGC-ACTC--AAATGTAAT----ACTGGT-ATAAATATGAACCAGCAG---GTT-TGTAAA-------AA----------------------------TC--------TTTG-TCG-G-T-TTTTCG-TAGATTTCGA-CCCATGGCAGT-ATTACCC-TTAGAA--A--T-ACTACTGTAGA-TTGT--T-C--T--CAAG----ATTGTAACC------TAT----C-A-A-A-A---T------ACC--AAAA--CAAA-TCT--T---GGG--GGCAAGTCTGCCTTAATTATAG--GACT----TTAAGGCCAAA--ATCTATGTCA
gi|10 : tgtccttccgccgagtaacacagtatgaatgattaatgtccttggaagaaatataccacgattaatgactgcttaaattgtataatatcactgaatgtcttttgtgtagagtaaactagattatggaaggaagatacatgtatgtagatatttatataagatacaaaaaaaaaacaacgtgttgaaggtgggaaatagaagtA----------T--------TTA-------TTTA-TCT-A-T-TTTTTGGTGAAAGTCTTCCCCAGGGCAAG-GATGTTC-CTGAAA--G--TCACC--TGTAAA-TTTT--T-C--T--TAAG----CTTGCAACCTACCAGTAT----CAA-A-A------T---A--TC--ATAA-------TT---T----------CAGGTCTACCCT-A----AT--GACT----TCAAAGTCAA----------TTACAAT------G--TA---G--AA--AAA----------------------------------CTAACT-CTAAAGATTGA-TTTCAGC-ATTG-CAAA-TA-A-TAAATTGTAAT-TT-T-AAA-----------------AAAAATTTAA--ACAT-ACA-----------------CACGGCAAATAATAA--TCC--AGTGAAA------C--TTGA--T-AT----A--G-CAACGGAA-AT-T-CATTT------GGT---AAAT---TG-TTC-CCCGT-TTT-CTCTTt
gi|11 : aA-TTGT--T-C-------AG----AATGTAATATA---A-------CAA-A-ATA---TC---GAG----AGAG--AAAA-TC---TT--AAA--GGCTGGCCTGTCTTG---------GACT----TTCCAGCCAAA--ATTCACGTCAAAGT------T--TA--------------------------------------------GG-TCAACT-TTGAAGGTTAT-TTTCATC-ATTG-TAGA-TT-A-TAAATTGTAGG-T-------TCG---AT-AT-G----AAA-ATTCATATATACAGTGTA-------------TTTA---CAGAAAA-AGAACTG--AA-CAAA------C--TTGA--T-AT----G----------AA-ATGTATTTTT---TACGGA---AAAT---Tgttaccctaaattgat
gi|12 : -TTTTCA-GGAATTTTGACCCCCAG-CAAG-GATGACC-CTAAA----------CAGTCTCCA-TTGT--T-T--TAATAAGGACAAGCCT-ACCCA---ATG-----CTA-A-A-A---TT---AAAGC--CAAA--Actggggcattcatatttctt
gi|12 : gG--GACAAGCCTACCC--A----AT--G-CTAAAATTAAAGCCAAA--ATT-GTGCCAAAAT------A--TA---G--AA--AAC--AGTTCAAA-AC---A--G-----TGTATAGG-ACAACT-TTGAAAATTAG-TTTCAGC-ATTG-TAAA-TA-A----ATTTTAGG-TT-C-TAATTGTAAAT-TT-G----AAAACTTCAGATATAT-ATAttgtgccaaaatatagaaaacagttcaaaacagtgtataggacaactttgaaaattagtttcagcattgtaaataaattttaggttctaattgtaaatttgaaaacttcagatatatatactttaaaaaaaatcaact
gi|13 : gttttcaggaattttgacccccagcaaggatgaccctaaacagtctccattgttttaataaA-ATCACAAAATAATAATCACAGCTTA------TACT----GTC------------AG-CCGTGTAA-A------TGAGTGAGCTATTC-TAAGCACAGG----TAATAT-ATTAATATGAAC---CA----GTT-TTCAAA-------AG-------CA----------TGAAACAGGTCCACTAAAATTTA-TAGTT-T-TTTTCG-TGAATTTCTACGCCAAGGTAGA-AATGCCT-CTA------------------AAA-TTGT--T-CCTT--TAAG----ATTGAAAT------GTTT----GAA-A-A-A---T------ATC--GAAA--AAGA-TC---T---ctttaaaaaaaatcaact
gi|14 : acttaaatAAAGTGTGG-CTTGAGGCGGATTCAA----ACt
gi|15 : tttttcgccgtggcagacgtgctcccgtcgtgtaaagcagaatgaatgatgattattgtcttgagggggaaactatctgagttcttttgtaatacattttatataaaaatggatatgcatttaaactaaattcaaatgtgaaataaaagataacaatgGGAA-AT---G--G-----T----AGG-CCAACT-TTGAAGGTTAA-TTTTAAC-ATTG-TAAATTA-A-TTGATTATCGG-TTGG-AAATCG-AAAT-ATCA----AAACATTCATA-ACAT-GTA-G-------------TGTATGCCAGAAAATAG---CGAAAA-GAAA------C--TTAA--T-AC----G-TG-TACC--AA-AT-TATCTTT---T-CGAA---AAAC---TGTTTT-CCCGTATTT-GTCCTTT-
gi|16 : TTA-AAATGTGTGG-CACGAGGCACATCCGA----ACC--ATGACAAAATCACCGT-GCAACGTA------TTCT----GCC------------AG--GGTGCAG------T-TGACTGAGC
gi|17 : tttatttaaaaaatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttatgagtatgaaaaaaagttgaaattgcaaaagaaaacaTAACCATCACAGCATA------TACT----GTC------------AG-TGGTGCAG-C----------TGAGCTATTC-TA--CACA--------------TAAGTAT---------------T-TACAAA-------A----------------------------------------TTA-T---A-T-TTTTCA-AGAATTTCAATTCCTAGGCATG-GTTGCCT-CTAAGAATA--T-ATTATGGCAAA-TTGT--T-T--T--TGAA----ATTGTAACC------TAT----CAA-
gi|18 : ATCATAGG-TT-------CA-AAAT-TT-A----AAAAA---AAGTCTAT-GTATA-------------TGTACAACAG-AAATA--------AA-GAAA------C--ATGATCT-AA----A-TT-CACA--AT-GT-GACTTTT---TCCGGA---AAATAAATCTTTT-CTTTT-GTT-ACCCT
gi|19 : acGGATTTAGACTCCAAAGCAGG-TATGCCC-CTAAAAC-C--T-GTTATTGTAAACTTGT--T-C--G--T-AG----ATTGTAACC-A-----AC----CAA----------T---ATATC--AAAAAGAAAA-TCTTAT---GGGCAGACAG----GCCTTGA----AACTTATT----TCAAAGCaaattgaccctttcc
gi|2 : TTTTTTTTTTACA----TTTGAACTTG---C--ATCTTA----ACTAGATTACAGAAGGAAAATCACAGCATA------CAGT----G--------------AA-CAGTGTAG-C----CCTGA--GAGCTACTCCTTAGTACAAG----ACCCGT-ATAAATATAAAC---CAC---GTC-TACAAA-------AA-------CA----------T--------TT--------TTTGGTCG-G-T-TTTTCG-TGAATTTCGACCCCAAGGCTGA-GGTGTCC-CTAAAA--A--T-ACTATAATAAA-TTGT--T-C--G--TAAG----TTTGCAACTTA---ATAT----TAATACA-A---TTTTTAAATT--AAAA--AAAAATC---T---AGG--GACAGGTCTGTTTTGA----AA--GATT----TCAAAGTCAAA--ATTCATGTCAAAAT------C--TAAA-TCAAA--AAA--TGGGGAAA-AT---G--G-----T----AGG-CCAACT-TTGAAGGTTAA-TTTTAAC-ATTG-TAAA-TA-A-TTGATTATCGG-TT-GGAAATCG-AAAT-AT-C----AAACATTCAAATACAT-GTATG-------------TGTATGCCAGAAAATAG--CGA--AA-GAAA------C--TTAA--T-AC----G-TG-TACC--AA-AT-TACTTTT---T-CGAA---AAAC---TGTTTT-CCCGT-ATTGGTCCTTT-CTTATTt
gi|20 : TTAAAAGAGTGTTG-CGTGAGGCAGATTCAA----AGCA--TGGCAAAA-AATAATCACAGCATA------TA
gi|3 : taattaaataagatatgaaaaagtgttgaaatgcgaaataaaaaa-C----C-TGAA-GAGCTACTCCTTAGTACAAG----ACCCGTTATAAATATAAAC---CAC---GTCCTACAAA-------AA-------CA----------T--------TT--------TTTG-TCG-GTT-TTTTCG--GAATTTCGACCCCAAGGTGAG-GTTGTCC-CGAAAA--ATTT-ACTATCA-AAA-TTGTGGTGC--G--TAAG-----TTGCAAACTAC--ATATAATACAA-A-A-ATTTTT---AAATTAAAAAA--AAAA-CC---TATAAGG--AACA-GTCTGTTTTGAAT--AG--GATT----TCAAAGTCAAAAGATTCATGTCAAAAT------C--TAAATC--AA--AAAATTGGGGAAA-AT---G--GAAGA-T----AGGACCAACTATTGAGAGTTAATTTTTAACAATTGATAAA-TA-ATTTGATTATCGG-TG-G-AAATCG-AAAT-AT-C----AAACATTCATA-ACAT-GTAGG-------------TGTATGCCAGAAAATAG---CG--AA-GAAAGAAACCT--TTAA--TCAC----GTTGTTACC--AA-AT-TACCTTT---T-C-GA---AAAC---TGTTTTCCCCGT-ATT-GTCCTTT-CTTATTaat
gi|4 : acagtgttataagcCATG------CAGT----AAC------------AG-CAGTGCAG-C------TAACTGAGCTATCT-TAAGCACA---------CGT--------TGAAC---AAG---GTA-TTCGAACAGTTTAAA-------CA----------G--------TT--------T-----CC-C-T-TTTTCG-TGAATTTCGACCTCAAGGCAGG-GGTGCCCGTTTAAA--A--T-ACTATTGTAAA-TT-T--T-C--T--GATG----ATTGTACTC------TAT----C-A-A-G-A---T------ATC--CAAA--CAAA-TCT--T---AGT--GACAGACCTTTCTTAA----AG--GAAT----TCAAATCCCAA--ATTCATTTCAAAAT------CGGTG---T--TT--AGA--TGGAGGAA-ATTCCG--ACT---T----A-G-CCAACT-TTGAAGATCAT-TATCAAC-ATTG-CAGA-CA-A-TTCGTAATA------A-AAA--G-AAAT-AC-G----GAA-ATTCA-AT------TATA-------------TGTACGACTGAAAATAA--CT----------------CTTTTGA--T-ATCACAG-TG-T--C--AT-GT-TATGTTT---C-AGGA---AAAT---TGTTCT-CCCCT-TTT-GCTCTTTACTTtctttcttcttttttttt
gi|5 : TGCAG-C------TGACTGAGGTACCC-CAAGAACAAGTTATATCTGT-GTTAATATGAAC---CAA---ATT-TTAAAT-------AA-------CAGATTCCCTAAT--------TT--------TTAA-TCG-A-TGTCTTCG-TGAATTTCGACCCCAAGACAGGTGTTCCCC-TTAAAA--AG-T-GCTATTGTAAA-TTCT--T-T--A--TTAG----ATTGTAATCTA------T----CCA-A-A------T---A--TC--AAAA--TAAT-TC---TT--AAG--GACATGCCTGTCTTGA----AG--GACT----TCAAAGAAAAA--GGTTATGTCAAA----------------------------TGGG-AAA-AT---GCTGCT---T----ATG-CCAACT-TTGAAGGTTAA-CTTCAAC-ATTG-TAGA-TA-A-TAAATTACAGGTTT-G-GAATGA-AAAT-AT-G----AAA-----AAAT-CAT-ATGTA-------------TGTACGACTGAAAATTA--CCA--AA-GAAA------C--TTG------C----C-TA--ACT--AA-GC-GACTTTT---T-TCGA---Atgtgacattgatcttttt
gi|6 : GT-ATAAATATGAAC---CAGCAGGTT-TGTAAA-------AA----------------------------TC--------TTTG-TCG-G-T-TTTTCG-TAGATTTCGACCC-ATGGCAGT-ATTACCC-TTAGAA--A--T-ACTACTGTAGA-TTGT--T-C--T--CAAG----ATTGTAACC------TAT----C-A-A-A-A---T------ACC--AAAA--CAAA-TCT--T---GGG--GGCAAGTCTGCCTTAATTATAG--GACT----TTAAGGCCAAA--ATCTATGTCATAATTGGTGCT--TA---T--------A--TGGGGAAACAC---T--G-----T-------------T-TT-----TTAA-TTTCAAC-A-----------------ATTATAGATTT-A-AAATGA-AAAT-AT-GAAGAAAACG-TCATATACAT-GTATATATGTATGTACACTGTACGTCAGGAAATAA--TTC--AA-GAAT------C--TTG------C------TT-TAAC--AATGC-GACATTTCCCC-CGGA---AATA---TGTTCT-CCtaagaggtattttagtttgttaccctaaattgatct
gi|7 : actgAAAAATGTTG-CCTAAGGTGGATTCGA----ACCA--TGGTAAAATA-TAACCACAACATA------TACT----A-C------------CGACGGTGTAGACGTGGC-TGACTGAGCT---------CATAAT----ACTCAT-TTAAATATCAAC----AG---ATC-CCCCAA-----------------------------------------------TTTG-TCG-G-T-TTCCCG-TGAAATTCGAATCCAAGACAGG-ATTgcagtagatgtttccttttgttacctgatttgatcttt
gi|8 : tcttttggtcgcacatgtgcttccgtcgaattacgcagaatggaagataatagatcgcccatggcgaggatggttctttttaactgcatttggtagaaaattacaattttgaagcattttatatgaagaatggacataatttaaactaatcattggagaaatatacatatgtagtgtatgacaaaaagtgttggaaatgcgaaataaaaataagactTTTTGTTTTTACAAAAGTGTGG-AATGAAGTGGATTCAA----ACTA--TGACAAAAGTAC--TCGCATTATA------TTCT----G-CT-----------AA-CAGTACAA-C------TGACTGAACTATTC-TAAACACAAGTAACACCCGT-GAAAATATGAAC---CAG---GTT-TTCAAA-------AAGAATTCCCAA---------TA-------TT--------TTTG-TCA-G-T-TTTTTA-TAACTTTTGACTCCAGGGCAGG-GATGTCC-ATAAAA--A--T-GTTATTG-AA--------T-A--T--CAAA----A---TA----A---ATA------AA-C-A-A---AT---AAAT---AAAC--AAA-----------GGG--GACAGG-CTGCCTTGA----TG--GACT----TAGAAG---------TAATGTTAAAAT------C--TA---T--a
gi|9 : ttaaactggtttattaaaagagaattatacacataattacgcaaaagtgtcgaaaatgcaaaatataaCG-G-G-TTTTCT-TCAAATTTAACTCCAAGGCAAG-GGTACCT-CTAGAG--A------------AAA----------------AAA----A----AACCCA---AT--------A-G-A-A---TA---CAACC---TAT--ATAT-TC---TTA-GGG--GGCACGCCTG------------------------AAAGCCA------TC---TCCAAAT------C--TT---T--ACTTAAA--TGGGG-AA-AT---A--GCTCTTT----AGG-CCAACT-TTGAAGGTTAG-TTTAAAC-ATTA-TGGA-TATATTAGATTATAAG-TT------TCG-AAATAAA-G----AATCGTTGAAA---AT-TCACG-------------TGTACGACGGAA-------CTG--AA-GAAA------T--TTGA--T-A----------TAAC--AATGT-GCCTTTT---T-CAGATACAGAT---C-TTTT-C
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|21 ): ATAACAATGTGACTTTTTCAATGGTATTTTCTTTTGTTACCCTGAATTGATCCCTTTCCTCGAAATCTT
Unaligned ( gi|22 ): GATCTTATAACAATCGTGATTTTTCACATTGGTAAATTTTCTTTTGTTACCCTGAATTGATCCTTTCC
Unaligned ( gi|23 ): ACAATATGACTATTTCTGGGAAATTGTTTTCTCTTAGAAATGTTTTCTTTTGTTACTCTGAATTGAT
Alignments
lowQualScore : 1111 111 11111 111111111111 44444444444444 33333333 222222222 1111 77777777777777777777777777777777777777777777777 1111111 11111 55555555555555555555555555555555 22222222 22222222 99999999999999999999999999999999999999999999999999999999 1111 1111111 111111 111 1111 222222222222222 22222222 111111 3333333333333333333333 11111 1
lowQualScore : 1 8 5 1 1 0 2222 999 44444 555555555555 11111111111111 5 44444444 2 99 444444444 77 0 8888 4 1 66666666666666666666666666666666666666666666666 3 444 3 3 2 1 3 3333333 0 3 2 0 33 2 11111 6666 1 99999999999999999999999999999999 0 44 666 44 77777777 44 2 2 0 2 11111111 7777 0 55 3 00000000000000000000000000000000000000000000000000000000 4 4 4 4 4 0 4 4 2222 7777777 22 3 3 111111 000 2222 3 777777777777777 2 77777777 4 111111 55 2222222222222222222222 8 44 1 33333 777 777 5 77 6 0
lowQualScore : . . . . . . .... ... ..... ............ .............. . ........ . .. ......... .. . .... . . ............................................... . ... . . . . . ....... . . . . .. . ..... .... . ................................ . .. ... .. ........ .. . . . . ........ .... . .. . ........................................................ . . . . . . . . .... ....... .. . . ...... ... .... . ............... . ........ . ...... .. ...................... . .. . ..... ... ... . .. . .
lowQualScore : 0 8 7 0 7 4 1111 444 99999 444444444444 99999999999999 0 77777777 5 77 888888888 99 7 1111 0 0 33333333333333333333333333333333333333333333333 6 888 1 1 9 0 1 8888888 7 4 9 7 99 9 11111 1111 6 22222222222222222222222222222222 1 22 555 88 77777777 66 3 9 8 3 55555555 1111 2 00 5 55555555555555555555555555555555555555555555555555555555 0 0 0 0 0 5 0 0 4444 6666666 66 6 6 111111 666 2222 6 222222222222222 4 77777777 0 555555 55 9999999999999999999999 0 66 0 99999 000 888 0 77 7 0
consensus : TTTTNTTTTTACAAAAGTGTGG-CNTGAGGCGGATTCGA----ACCA-ATGGCAAAATAACAATCGCAGCATA------TA----CTG-C------------AG-CGGTGCAG-C----C-TGACTGAGCTACTC-TAAGCACAAG----ACCCGT-ATAAATATGAACCAG---GTT-TNCAAA-------AA-------CA----------T--------TT--------TTTG-TCG-G-T-TTTTCG-TGAATTTCGACCCCAAGGCAGG-GNTGCCC-CTAAAA--A--T-ACTATTGTAAA-TTGT--T-C--T--TAAG----ATTGTAACCTA---ATAT----CAA-A-A-A---TT---AAATC--AAAA--AAAA-TC---T---GGG--GACAGGCCTGCCTTGA----AG--GACT----TCAAAGCCAAA--ATTCATGTCAAAAT------C--TA---T--AA--AAA--TGGGGAAA-AT---G--G-----T----AGG-CCAACT-TTGAAGGTTAA-TTTCAAC-ATTG-TAGA-TA-A-TNGATTATAGG-TT-G-AAATCG-AAAT-AT-G----AAACATTCANATACAT-GTATG-------------TGTACGNCAGAAAATAG--CCG--AA-GAAA------C--TTGA--T-AC----G-TG-TACC--AA-GT-TACNTTT---T-CGGA---AAAT---TGTTTT-CCCGT-NTT-GTCCTTT-CTTATT
Reference ( family-668 ) : TTTTNTTTTTACAAAAGTGTGG-CNTGAGGCGGATTCGA----ACCA-ATGGCAAAATAACAATCGCAGCATA------TA----CTG-C------------AG-CGGTGCAG-C----C-TGACTGAGCTACTC-TAAGCACAAG----ACCCGT-ATAAATATGAACCAG---GTT-TNCAAA-------AA-------CA----------T--------TT--------TTTG-TCG-G-T-TTTTCG-TGAATTTCGACCCCAAGGCAGG-GNTGCCC-CTAAAA--A--T-ACTATTGTAAA-TTGT--T-C--T--TAAG----ATTGTAACCTA---ATAT----CAA-A-A-A---TT---AAATC--AAAA--AAAA-TC---T---GGG--GACAGGCCTGCCTTGA----AG--GACT----TCAAAGCCAAA--ATTCATGTCAAAAT------C--TA---T--AA--AAA--TGGGGAAA-AT---G--G-----T----AGG-CCAACT-TTGAAGGTTAA-TTTCAAC-ATTG-TAGA-TA-A-TNGATTATAGG-TT-G-AAATCG-AAAT-AT-G----AAACATTCANATACAT-GTATG-------------TGTACGNCAGAAAATAG--CCG--AA-GAAA------C--TTGA--T-AC----G-TG-TACC--AA-GT-TACNTTT---T-CGGA---AAAT---TGTTTT-CCCGT-NTT-GTCCTTT-CTTATT
gi|1 : AAAATTGTGG-TGCGAGTCGGATTCGATTCGAACT-ATGGCAAAA-AGTTATCGCAACATAAAATTCTAATCGCTG-CTTCAACTCCTATAG-CGGTGCA-------T-T--CTAAGC-ACTC--AAATGTAAT----ACTGGT-ATAAATATGAACCAGCAGGTT-TGTAAA-------AA----------------------------TC--------TTTG-TCG-G-T-TTTTCG-TAGATTTCGACCC-ATGGCAGT-ATTACCC-TTAGAA--A--T-ACTACTGTAGA-TTGT--T-C--T--CAAG----ATTGTAACC------TAT----C-A-A-A-A---T------ACC--AAAA--CAAA-TCT--T---GGG--GGCAAGTCTGCCTTAATTATAG--GACT----TTAAGGCCAAA--ATCTATGTCA
gi|10 : tgtccttccgccgagtaacacagtatgaatgattaatgtccttggaagaaatataccacgattaatgactgcttaaattgtataatatcactgaatgtcttttgtgtagagtaaactagattatggaaggaagatacatgtatgtagatatttatataagatacaaaaaaaaaacaacgtgttgaaggtgggaaatagaagtA----------T--------TTA-------TTTA-TCT-A-T-TTTTTGGTGAAAGTCTTCCCCAGGGCAAG-GATGTTC-CTGAAA--G--TCACC--TGTAAA-TTTT--T-C--T--TAAG----CTTGCAACCTACCAGTAT----CAA-A-A------T---A--TC--ATAA-------TT---T----------CAGGTCTACCCT-A----AT--GACT----TCAAAGTCAA----------TTACAAT------G--TA---G--AA--AAA----------------------------------CTAACT-CTAAAGATTGA-TTTCAGC-ATTG-CAAA-TA-A-TAAATTGTAAT-TT-T-AAA-----------------AAAAATTTAA--ACAT-ACA-----------------CACGGCAAATAATAA--TCC--AGTGAAA------C--TTGA--T-AT----A--G-CAACGGAA-AT-T-CATTT------GGT---AAAT---TG-TTC-CCCGT-TTT-CTCTTt
gi|11 : aA-TTGT--T-C-------AG----AATGTAATATA---A-------CAA-A-ATA---TC---GAG----AGAG--AAAA-TC---TT--AAA--GGCTGGCCTGTCTTG---------GACT----TTCCAGCCAAA--ATTCACGTCAAAGT------T--TA--------------------------------------------GG-TCAACT-TTGAAGGTTAT-TTTCATC-ATTG-TAGA-TT-A-TAAATTGTAGG-T-------TCG---AT-AT-G----AAA-ATTCATATATACAGTGTA-------------TTTA---CAGAAAA-AGAACTG--AA-CAAA------C--TTGA--T-AT----G----------AA-ATGTATTTTT---TACGGA---AAAT---Tgttaccctaaattgat
gi|12 : -TTTTCA-GGAATTTTGACCCCCAG-CAAG-GATGACC-CTAAA----------CAGTCTCCA-TTGT--T-T--TAATAAGGACAAGCCT-ACCCA---ATG-----CTA-A-A-A---TT---AAAGC--CAAA--Actggggcattcatatttctt
gi|12 : gG--GACAAGCCTACCC--A----AT--G-CTAAAATTAAAGCCAAA--ATT-GTGCCAAAAT------A--TA---G--AA--AAC--AGTTCAAA-AC---A--G-----TGTATAGG-ACAACT-TTGAAAATTAG-TTTCAGC-ATTG-TAAA-TA-A----ATTTTAGG-TT-C-TAATTGTAAAT-TT-G----AAAACTTCAGATATAT-ATAttgtgccaaaatatagaaaacagttcaaaacagtgtataggacaactttgaaaattagtttcagcattgtaaataaattttaggttctaattgtaaatttgaaaacttcagatatatatactttaaaaaaaatcaact
gi|13 : gttttcaggaattttgacccccagcaaggatgaccctaaacagtctccattgttttaataaA-ATCACAAAATAATAATCACAGCTTA------TA----CTGTC------------AG-CCGTGTAA-A------TGAGTGAGCTATTC-TAAGCACAGG----TAATAT-ATTAATATGAACCA----GTT-TTCAAA-------AG-------CA----------TGAAACAGGTCCACTAAAATTTA-TAGTT-T-TTTTCG-TGAATTTCTACGCCAAGGTAGA-AATGCCT-CTA------------------AAA-TTGT--T-CCTT--TAAG----ATTGAAAT------GTTT----GAA-A-A-A---T------ATC--GAAA--AAGA-TC---T---ctttaaaaaaaatcaact
gi|14 : acttaaatAAAGTGTGG-CTTGAGGCGGATTCAA----ACt
gi|15 : tttttcgccgtggcagacgtgctcccgtcgtgtaaagcagaatgaatgatgattattgtcttgagggggaaactatctgagttcttttgtaatacattttatataaaaatggatatgcatttaaactaaattcaaatgtgaaataaaagataacaatgGGAA-AT---G--G-----T----AGG-CCAACT-TTGAAGGTTAA-TTTTAAC-ATTG-TAAATTA-A-TTGATTATCGG-TTGG-AAATCG-AAAT-ATCA----AAACATTCATA-ACAT-GTA-G-------------TGTATGCCAGAAAATAG---CGAAAA-GAAA------C--TTAA--T-AC----G-TG-TACC--AA-AT-TATCTTT---T-CGAA---AAAC---TGTTTT-CCCGTATTT-GTCCTTT-
gi|16 : TTA-AAATGTGTGG-CACGAGGCACATCCGA----ACC--ATGACAAAATCACCGT-GCAACGTA------TT----CTGCC------------AG--GGTGCAG------T-TGACTGAGC
gi|17 : tttatttaaaaaatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttatgagtatgaaaaaaagttgaaattgcaaaagaaaacaTAACCATCACAGCATA------TA----CTGTC------------AG-TGGTGCAG-C----------TGAGCTATTC-TA--CACA--------------TAAGTAT------------T-TACAAA-------A----------------------------------------TTA-T---A-T-TTTTCA-AGAATTTCAATTCCTAGGCATG-GTTGCCT-CTAAGAATA--T-ATTATGGCAAA-TTGT--T-T--T--TGAA----ATTGTAACC------TAT----CAA-
gi|18 : ATCATAGG-TT-------CA-AAAT-TT-A----AAAAA---AAGTCTAT-GTATA-------------TGTACAACAG-AAATA--------AA-GAAA------C--ATGATCT-AA----A-TT-CACA--AT-GT-GACTTTT---TCCGGA---AAATAAATCTTTT-CTTTT-GTT-ACCCT
gi|19 : acGGATTTAGACTCCAAAGCAGG-TATGCCC-CTAAAAC-C--T-GTTATTGTAAACTTGT--T-C--G--T-AG----ATTGTAACC-A-----AC----CAA----------T---ATATC--AAAAAGAAAA-TCTTAT---GGGCAGACAG----GCCTTGA----AACTTATT----TCAAAGCaaattgaccctttcc
gi|2 : TTTTTTTTTTACA----TTTGAACTTG---C--ATCTTA----ACTAGATTACAGAAGGAAAATCACAGCATA------CA----GTG--------------AA-CAGTGTAG-C----CCTGA--GAGCTACTCCTTAGTACAAG----ACCCGT-ATAAATATAAACCAC---GTC-TACAAA-------AA-------CA----------T--------TT--------TTTGGTCG-G-T-TTTTCG-TGAATTTCGACCCCAAGGCTGA-GGTGTCC-CTAAAA--A--T-ACTATAATAAA-TTGT--T-C--G--TAAG----TTTGCAACTTA---ATAT----TAATACA-A---TTTTTAAATT--AAAA--AAAAATC---T---AGG--GACAGGTCTGTTTTGA----AA--GATT----TCAAAGTCAAA--ATTCATGTCAAAAT------C--TAAA-TCAAA--AAA--TGGGGAAA-AT---G--G-----T----AGG-CCAACT-TTGAAGGTTAA-TTTTAAC-ATTG-TAAA-TA-A-TTGATTATCGG-TT-GGAAATCG-AAAT-AT-C----AAACATTCAAATACAT-GTATG-------------TGTATGCCAGAAAATAG--CGA--AA-GAAA------C--TTAA--T-AC----G-TG-TACC--AA-AT-TACTTTT---T-CGAA---AAAC---TGTTTT-CCCGT-ATTGGTCCTTT-CTTATTt
gi|20 : TTAAAAGAGTGTTG-CGTGAGGCAGATTCAA----AGCA--TGGCAAAA-AATAATCACAGCATA------TA----
gi|3 : taattaaataagatatgaaaaagtgttgaaatgcgaaataaaaaa-C----C-TGAA-GAGCTACTCCTTAGTACAAG----ACCCGTTATAAATATAAACCAC---GTCCTACAAA-------AA-------CA----------T--------TT--------TTTG-TCG-GTT-TTTTCG--GAATTTCGACCCCAAGGTGAG-GTTGTCC-CGAAAA--ATTT-ACTATCA-AAA-TTGTGGTGC--G--TAAG-----TTGCAAACTAC--ATATAATACAA-A-A-ATTTTT---AAATTAAAAAA--AAAA-CC---TATAAGG--AACA-GTCTGTTTTGAAT--AG--GATT----TCAAAGTCAAAAGATTCATGTCAAAAT------C--TAAATC--AA--AAAATTGGGGAAA-AT---G--GAAGA-T----AGGACCAACTATTGAGAGTTAATTTTTAACAATTGATAAA-TA-ATTTGATTATCGG-TG-G-AAATCG-AAAT-AT-C----AAACATTCATA-ACAT-GTAGG-------------TGTATGCCAGAAAATAG---CG--AA-GAAAGAAACCT--TTAA--TCAC----GTTGTTACC--AA-AT-TACCTTT---T-C-GA---AAAC---TGTTTTCCCCGT-ATT-GTCCTTT-CTTATTaat
gi|4 : acagtgttataagc-C------------AG-CAGTGCAG-C------TAACTGAGCTATCT-TAAGCACA---------CGT--------TGAACAAG---GTA-TTCGAACAGTTTAAA-------CA----------G--------TT--------T-----CC-C-T-TTTTCG-TGAATTTCGACCTCAAGGCAGG-GGTGCCCGTTTAAA--A--T-ACTATTGTAAA-TT-T--T-C--T--GATG----ATTGTACTC------TAT----C-A-A-G-A---T------ATC--CAAA--CAAA-TCT--T---AGT--GACAGACCTTTCTTAA----AG--GAAT----TCAAATCCCAA--ATTCATTTCAAAAT------CGGTG---T--TT--AGA--TGGAGGAA-ATTCCG--ACT---T----A-G-CCAACT-TTGAAGATCAT-TATCAAC-ATTG-CAGA-CA-A-TTCGTAATA------A-AAA--G-AAAT-AC-G----GAA-ATTCA-AT------TATA-------------TGTACGACTGAAAATAA--CT----------------CTTTTGA--T-ATCACAG-TG-T--C--AT-GT-TATGTTT---C-AGGA---AAAT---TGTTCT-CCCCT-TTT-GCTCTTTACTTtctttcttcttttttttt
gi|5 : catgcagtaaTGCAG-C------TGACTGAGGTACCC-CAAGAACAAGTTATATCTGT-GTTAATATGAACCAA---ATT-TTAAAT-------AA-------CAGATTCCCTAAT--------TT--------TTAA-TCG-A-TGTCTTCG-TGAATTTCGACCCCAAGACAGGTGTTCCCC-TTAAAA--AG-T-GCTATTGTAAA-TTCT--T-T--A--TTAG----ATTGTAATCTA------T----CCA-A-A------T---A--TC--AAAA--TAAT-TC---TT--AAG--GACATGCCTGTCTTGA----AG--GACT----TCAAAGAAAAA--GGTTATGTCAAA----------------------------TGGG-AAA-AT---GCTGCT---T----ATG-CCAACT-TTGAAGGTTAA-CTTCAAC-ATTG-TAGA-TA-A-TAAATTACAGGTTT-G-GAATGA-AAAT-AT-G----AAA-----AAAT-CAT-ATGTA-------------TGTACGACTGAAAATTA--CCA--AA-GAAA------C--TTG------C----C-TA--ACT--AA-GC-GACTTTT---T-TCGA---Atgtgacattgatcttttt
gi|6 : GT-ATAAATATGAACCAGCAGGTT-TGTAAA-------AA----------------------------TC--------TTTG-TCG-G-T-TTTTCG-TAGATTTCGACCC-ATGGCAGT-ATTACCC-TTAGAA--A--T-ACTACTGTAGA-TTGT--T-C--T--CAAG----ATTGTAACC------TAT----C-A-A-A-A---T------ACC--AAAA--CAAA-TCT--T---GGG--GGCAAGTCTGCCTTAATTATAG--GACT----TTAAGGCCAAA--ATCTATGTCATAATTGGTGCT--TA---T--------A--TGGGGAAACAC---T--G-----T-------------T-TT-----TTAA-TTTCAAC-A-----------------ATTATAGATTT-A-AAATGA-AAAT-AT-GAAGAAAACG-TCATATACAT-GTATATATGTATGTACACTGTACGTCAGGAAATAA--TTC--AA-GAAT------C--TTG------C------TT-TAAC--AATGC-GACATTTCCCC-CGGA---AATA---TGTTCT-CCtaagaggtattttagtttgttaccctaaattgatct
gi|7 : actgAAAAATGTTG-CCTAAGGTGGATTCGA----ACCA--TGGTAAAATA-TAACCACAACATA------TA----CTA-C------------CGACGGTGTAGACGTGGC-TGACTGAGCT---------CATAAT----ACTCAT-TTAAATATCAAC-AG---ATC-CCCCAA-----------------------------------------------TTTG-TCG-G-T-TTCCCG-TGAAATTCGAATCCAAGACAGG-ATTgcagtagatgtttccttttgttacctgatttgatcttt
gi|8 : tcttttggtcgcacatgtgcttccgtcgaattacgcagaatggaagataatagatcgcccatggcgaggatggttctttttaactgcatttggtagaaaattacaattttgaagcattttatatgaagaatggacataatttaaactaatcattggagaaatatacatatgtagtgtatgacaaaaagtgttggaaatgcgaaataaaaataagactTTTTGTTTTTACAAAAGTGTGG-AATGAAGTGGATTCAA----ACTA--TGACAAAAGTAC--TCGCATTATA------TT----CTG-CT-----------AA-CAGTACAA-C------TGACTGAACTATTC-TAAACACAAGTAACACCCGT-GAAAATATGAACCAG---GTT-TTCAAA-------AAGAATTCCCAA---------TA-------TT--------TTTG-TCA-G-T-TTTTTA-TAACTTTTGACTCCAGGGCAGG-GATGTCC-ATAAAA--A--T-GTTATTG-AA--------T-A--T--CAAA----A---TA----A---ATA------AA-C-A-A---AT---AAAT---AAAC--AAA-----------GGG--GACAGG-CTGCCTTGA----TG--GACT----TAGAAG---------TAATGTTAAAAT------C--TA---T--a
gi|9 : ttaaactggtttattaaaagagaattatacacataattacgcaaaagtgtcgaaaatgcaaaatataaCG-G-G-TTTTCT-TCAAATTTAACTCCAAGGCAAG-GGTACCT-CTAGAG--A------------AAA----------------AAA----A----AACCCA---AT--------A-G-A-A---TA---CAACC---TAT--ATAT-TC---TTA-GGG--GGCACGCCTG------------------------AAAGCCA------TC---TCCAAAT------C--TT---T--ACTTAAA--TGGGG-AA-AT---A--GCTCTTT----AGG-CCAACT-TTGAAGGTTAG-TTTAAAC-ATTA-TGGA-TATATTAGATTATAAG-TT------TCG-AAATAAA-G----AATCGTTGAAA---AT-TCACG-------------TGTACGACGGAA-------CTG--AA-GAAA------T--TTGA--T-A----------TAAC--AATGT-GCCTTTT---T-CAGATACAGAT---C-TTTT-C
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|21 ): ATAACAATGTGACTTTTTCAATGGTATTTTCTTTTGTTACCCTGAATTGATCCCTTTCCTCGAAATCTT
Unaligned ( gi|22 ): GATCTTATAACAATCGTGATTTTTCACATTGGTAAATTTTCTTTTGTTACCCTGAATTGATCCTTTCC
Unaligned ( gi|23 ): ACAATATGACTATTTCTGGGAAATTGTTTTCTCTTAGAAATGTTTTCTTTTGTTACTCTGAATTGAT
Alignments
lowQualScore : 1111 111 11111 111111111111 44444444444444 33333333 222222222 1111 77777777777777777777777777777777777777777777777 1111111 11111 55555555555555555555555555555555 22222222 22222222 99999999999999999999999999999999999999999999999999999999 1111 1111111 111111 111 1111 222222222222222 22222222 111111 3333333333333333333333 11111 1
lowQualScore : 1 8 5 1 1 0 2222 999 44444 555555555555 11111111111111 5 44444444 2 99 444444444 77 0 8888 4 1 66666666666666666666666666666666666666666666666 3 444 3 3 2 1 3 3333333 0 3 2 0 33 2 11111 6666 1 99999999999999999999999999999999 0 44 666 44 77777777 44 2 2 0 2 11111111 7777 0 55 3 00000000000000000000000000000000000000000000000000000000 4 4 4 4 4 0 4 4 2222 7777777 22 3 3 111111 000 2222 3 777777777777777 2 77777777 4 111111 55 2222222222222222222222 8 44 1 33333 777 777 5 77 6 0
lowQualScore : . . . . . . .... ... ..... ............ .............. . ........ . .. ......... .. . .... . . ............................................... . ... . . . . . ....... . . . . .. . ..... .... . ................................ . .. ... .. ........ .. . . . . ........ .... . .. . ........................................................ . . . . . . . . .... ....... .. . . ...... ... .... . ............... . ........ . ...... .. ...................... . .. . ..... ... ... . .. . .
lowQualScore : 0 8 7 0 7 4 1111 444 99999 444444444444 99999999999999 0 77777777 5 77 888888888 99 7 1111 0 0 33333333333333333333333333333333333333333333333 6 888 1 1 9 0 1 8888888 7 4 9 7 99 9 11111 1111 6 22222222222222222222222222222222 1 22 555 88 77777777 66 3 9 8 3 55555555 1111 2 00 5 55555555555555555555555555555555555555555555555555555555 0 0 0 0 0 5 0 0 4444 6666666 66 6 6 111111 666 2222 6 222222222222222 4 77777777 0 555555 55 9999999999999999999999 0 66 0 99999 000 888 0 77 7 0
consensus : TTTTNTTTTTACAAAAGTGTGG-CNTGAGGCGGATTCGA----ACCA-ATGGCAAAATAACAATCGCAGCATA------TA----CTG-C------------AG-CGGTGCAG-C----C-TGACTGAGCTACTC-TAAGCACAAG----ACCCGT-ATAAATATGAACCAG---GTT-TNCAAA-------AA-------CA----------T--------TT--------TTTG-TCG-G-T-TTTTCG-TGAATTTCGACCCCAAGGCAGG-GNTGCCC-CTAAAA--A--T-ACTATTGTAAA-TTGT--T-C--T--TAAG----ATTGTAACCTA---ATAT----CAA-A-A-A---TT---AAATC--AAAA--AAAA-TC---T---GGG--GACAGGCCTGCCTTGA----AG--GACT----TCAAAGCCAAA--ATTCATGTCAAAAT------C--TA---T--AA--AAA--TGGGGAAA-AT---G--G-----T----AGG-CCAACT-TTGAAGGTTAA-TTTCAAC-ATTG-TAGA-TA-A-TNGATTATAGG-TT-G-AAATCG-AAAT-AT-G----AAACATTCANATACAT-GTATG-------------TGTACGNCAGAAAATAG--CCG--AA-GAAA------C--TTGA--T-AC----G-TG-TACC--AA-GT-TACNTTT---T-CGGA---AAAT---TGTTTT-CCCGT-NTT-GTCCTTT-CTTATT
Reference ( family-668 ) : TTTTNTTTTTACAAAAGTGTGG-CNTGAGGCGGATTCGA----ACCA-ATGGCAAAATAACAATCGCAGCATA------TA----CTG-C------------AG-CGGTGCAG-C----C-TGACTGAGCTACTC-TAAGCACAAG----ACCCGT-ATAAATATGAACCAG---GTT-TNCAAA-------AA-------CA----------T--------TT--------TTTG-TCG-G-T-TTTTCG-TGAATTTCGACCCCAAGGCAGG-GNTGCCC-CTAAAA--A--T-ACTATTGTAAA-TTGT--T-C--T--TAAG----ATTGTAACCTA---ATAT----CAA-A-A-A---TT---AAATC--AAAA--AAAA-TC---T---GGG--GACAGGCCTGCCTTGA----AG--GACT----TCAAAGCCAAA--ATTCATGTCAAAAT------C--TA---T--AA--AAA--TGGGGAAA-AT---G--G-----T----AGG-CCAACT-TTGAAGGTTAA-TTTCAAC-ATTG-TAGA-TA-A-TNGATTATAGG-TT-G-AAATCG-AAAT-AT-G----AAACATTCANATACAT-GTATG-------------TGTACGNCAGAAAATAG--CCG--AA-GAAA------C--TTGA--T-AC----G-TG-TACC--AA-GT-TACNTTT---T-CGGA---AAAT---TGTTTT-CCCGT-NTT-GTCCTTT-CTTATT
gi|1 : AAAATTGTGG-TGCGAGTCGGATTCGATTCGAACT-ATGGCAAAA-AGTTATCGCAACATAAAATTCTAATCGCTG-CTTCAACTCCTATAG-CGGTGCA-------T-T--CTAAGC-ACTC--AAATGTAAT----ACTGGT-ATAAATATGAACCAGCAGGTT-TGTAAA-------AA----------------------------TC--------TTTG-TCG-G-T-TTTTCG-TAGATTTCGACCC-ATGGCAGT-ATTACCC-TTAGAA--A--T-ACTACTGTAGA-TTGT--T-C--T--CAAG----ATTGTAACC------TAT----C-A-A-A-A---T------ACC--AAAA--CAAA-TCT--T---GGG--GGCAAGTCTGCCTTAATTATAG--GACT----TTAAGGCCAAA--ATCTATGTCA
gi|10 : tgtccttccgccgagtaacacagtatgaatgattaatgtccttggaagaaatataccacgattaatgactgcttaaattgtataatatcactgaatgtcttttgtgtagagtaaactagattatggaaggaagatacatgtatgtagatatttatataagatacaaaaaaaaaacaacgtgttgaaggtgggaaatagaagtA----------T--------TTA-------TTTA-TCT-A-T-TTTTTGGTGAAAGTCTTCCCCAGGGCAAG-GATGTTC-CTGAAA--G--TCACC--TGTAAA-TTTT--T-C--T--TAAG----CTTGCAACCTACCAGTAT----CAA-A-A------T---A--TC--ATAA-------TT---T----------CAGGTCTACCCT-A----AT--GACT----TCAAAGTCAA----------TTACAAT------G--TA---G--AA--AAA----------------------------------CTAACT-CTAAAGATTGA-TTTCAGC-ATTG-CAAA-TA-A-TAAATTGTAAT-TT-T-AAA-----------------AAAAATTTAA--ACAT-ACA-----------------CACGGCAAATAATAA--TCC--AGTGAAA------C--TTGA--T-AT----A--G-CAACGGAA-AT-T-CATTT------GGT---AAAT---TG-TTC-CCCGT-TTT-CTCTTt
gi|11 : aA-TTGT--T-C-------AG----AATGTAATATA---A-------CAA-A-ATA---TC---GAG----AGAG--AAAA-TC---TT--AAA--GGCTGGCCTGTCTTG---------GACT----TTCCAGCCAAA--ATTCACGTCAAAGT------T--TA--------------------------------------------GG-TCAACT-TTGAAGGTTAT-TTTCATC-ATTG-TAGA-TT-A-TAAATTGTAGG-T-------TCG---AT-AT-G----AAA-ATTCATATATACAGTGTA-------------TTTA---CAGAAAA-AGAACTG--AA-CAAA------C--TTGA--T-AT----G----------AA-ATGTATTTTT---TACGGA---AAAT---Tgttaccctaaattgat
gi|12 : -TTTTCA-GGAATTTTGACCCCCAG-CAAG-GATGACC-CTAAA----------CAGTCTCCA-TTGT--T-T--TAATAAGGACAAGCCT-ACCCA---ATG-----CTA-A-A-A---TT---AAAGC--CAAA--Actggggcattcatatttctt
gi|12 : gG--GACAAGCCTACCC--A----AT--G-CTAAAATTAAAGCCAAA--ATT-GTGCCAAAAT------A--TA---G--AA--AAC--AGTTCAAA-AC---A--G-----TGTATAGG-ACAACT-TTGAAAATTAG-TTTCAGC-ATTG-TAAA-TA-A----ATTTTAGG-TT-C-TAATTGTAAAT-TT-G----AAAACTTCAGATATAT-ATAttgtgccaaaatatagaaaacagttcaaaacagtgtataggacaactttgaaaattagtttcagcattgtaaataaattttaggttctaattgtaaatttgaaaacttcagatatatatactttaaaaaaaatcaact
gi|13 : gttttcaggaattttgacccccagcaaggatgaccctaaacagtctccattgttttaataaA-ATCACAAAATAATAATCACAGCTTA------TA----CTGTC------------AG-CCGTGTAA-A------TGAGTGAGCTATTC-TAAGCACAGG----TAATAT-ATTAATATGAACCA----GTT-TTCAAA-------AG-------CA----------TGAAACAGGTCCACTAAAATTTA-TAGTT-T-TTTTCG-TGAATTTCTACGCCAAGGTAGA-AATGCCT-CTA------------------AAA-TTGT--T-CCTT--TAAG----ATTGAAAT------GTTT----GAA-A-A-A---T------ATC--GAAA--AAGA-TC---T---ctttaaaaaaaatcaact
gi|14 : acttaaatAAAGTGTGG-CTTGAGGCGGATTCAA----ACt
gi|15 : tttttcgccgtggcagacgtgctcccgtcgtgtaaagcagaatgaatgatgattattgtcttgagggggaaactatctgagttcttttgtaatacattttatataaaaatggatatgcatttaaactaaattcaaatgtgaaataaaagataacaatgGGAA-AT---G--G-----T----AGG-CCAACT-TTGAAGGTTAA-TTTTAAC-ATTG-TAAATTA-A-TTGATTATCGG-TTGG-AAATCG-AAAT-ATCA----AAACATTCATA-ACAT-GTA-G-------------TGTATGCCAGAAAATAG---CGAAAA-GAAA------C--TTAA--T-AC----G-TG-TACC--AA-AT-TATCTTT---T-CGAA---AAAC---TGTTTT-CCCGTATTT-GTCCTTT-
gi|16 : TTA-AAATGTGTGG-CACGAGGCACATCCGA----ACC--ATGACAAAATCACCGT-GCAACGTA------TT----CTGCC------------AG--GGTGCAG------T-TGACTGAGC
gi|17 : tttatttaaaaaatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttatgagtatgaaaaaaagttgaaattgcaaaagaaaacaTAACCATCACAGCATA------TA----CTGTC------------AG-TGGTGCAG-C----------TGAGCTATTC-TA--CACA--------------TAAGTAT------------T-TACAAA-------A----------------------------------------TTA-T---A-T-TTTTCA-AGAATTTCAATTCCTAGGCATG-GTTGCCT-CTAAGAATA--T-ATTATGGCAAA-TTGT--T-T--T--TGAA----ATTGTAACC------TAT----CAA-
gi|18 : ATCATAGG-TT-------CA-AAAT-TT-A----AAAAA---AAGTCTAT-GTATA-------------TGTACAACAG-AAATA--------AA-GAAA------C--ATGATCT-AA----A-TT-CACA--AT-GT-GACTTTT---TCCGGA---AAATAAATCTTTT-CTTTT-GTT-ACCCT
gi|19 : acGGATTTAGACTCCAAAGCAGG-TATGCCC-CTAAAAC-C--T-GTTATTGTAAACTTGT--T-C--G--T-AG----ATTGTAACC-A-----AC----CAA----------T---ATATC--AAAAAGAAAA-TCTTAT---GGGCAGACAG----GCCTTGA----AACTTATT----TCAAAGCaaattgaccctttcc
gi|2 : TTTTTTTTTTACA----TTTGAACTTG---C--ATCTTA----ACTAGATTACAGAAGGAAAATCACAGCATA------CA----GTG--------------AA-CAGTGTAG-C----CCTGA--GAGCTACTCCTTAGTACAAG----ACCCGT-ATAAATATAAACCAC---GTC-TACAAA-------AA-------CA----------T--------TT--------TTTGGTCG-G-T-TTTTCG-TGAATTTCGACCCCAAGGCTGA-GGTGTCC-CTAAAA--A--T-ACTATAATAAA-TTGT--T-C--G--TAAG----TTTGCAACTTA---ATAT----TAATACA-A---TTTTTAAATT--AAAA--AAAAATC---T---AGG--GACAGGTCTGTTTTGA----AA--GATT----TCAAAGTCAAA--ATTCATGTCAAAAT------C--TAAA-TCAAA--AAA--TGGGGAAA-AT---G--G-----T----AGG-CCAACT-TTGAAGGTTAA-TTTTAAC-ATTG-TAAA-TA-A-TTGATTATCGG-TT-GGAAATCG-AAAT-AT-C----AAACATTCAAATACAT-GTATG-------------TGTATGCCAGAAAATAG--CGA--AA-GAAA------C--TTAA--T-AC----G-TG-TACC--AA-AT-TACTTTT---T-CGAA---AAAC---TGTTTT-CCCGT-ATTGGTCCTTT-CTTATTt
gi|20 : TTAAAAGAGTGTTG-CGTGAGGCAGATTCAA----AGCA--TGGCAAAA-AATAATCACAGCATA------TA----
gi|3 : taattaaataagatatgaaaaagtgttgaaatgcgaaataaaaaa-C----C-TGAA-GAGCTACTCCTTAGTACAAG----ACCCGTTATAAATATAAACCAC---GTCCTACAAA-------AA-------CA----------T--------TT--------TTTG-TCG-GTT-TTTTCG--GAATTTCGACCCCAAGGTGAG-GTTGTCC-CGAAAA--ATTT-ACTATCA-AAA-TTGTGGTGC--G--TAAG-----TTGCAAACTAC--ATATAATACAA-A-A-ATTTTT---AAATTAAAAAA--AAAA-CC---TATAAGG--AACA-GTCTGTTTTGAAT--AG--GATT----TCAAAGTCAAAAGATTCATGTCAAAAT------C--TAAATC--AA--AAAATTGGGGAAA-AT---G--GAAGA-T----AGGACCAACTATTGAGAGTTAATTTTTAACAATTGATAAA-TA-ATTTGATTATCGG-TG-G-AAATCG-AAAT-AT-C----AAACATTCATA-ACAT-GTAGG-------------TGTATGCCAGAAAATAG---CG--AA-GAAAGAAACCT--TTAA--TCAC----GTTGTTACC--AA-AT-TACCTTT---T-C-GA---AAAC---TGTTTTCCCCGT-ATT-GTCCTTT-CTTATTaat
gi|4 : acagtgttataagc-C------------AG-CAGTGCAG-C------TAACTGAGCTATCT-TAAGCACA---------CGT--------TGAACAAG---GTA-TTCGAACAGTTTAAA-------CA----------G--------TT--------T-----CC-C-T-TTTTCG-TGAATTTCGACCTCAAGGCAGG-GGTGCCCGTTTAAA--A--T-ACTATTGTAAA-TT-T--T-C--T--GATG----ATTGTACTC------TAT----C-A-A-G-A---T------ATC--CAAA--CAAA-TCT--T---AGT--GACAGACCTTTCTTAA----AG--GAAT----TCAAATCCCAA--ATTCATTTCAAAAT------CGGTG---T--TT--AGA--TGGAGGAA-ATTCCG--ACT---T----A-G-CCAACT-TTGAAGATCAT-TATCAAC-ATTG-CAGA-CA-A-TTCGTAATA------A-AAA--G-AAAT-AC-G----GAA-ATTCA-AT------TATA-------------TGTACGACTGAAAATAA--CT----------------CTTTTGA--T-ATCACAG-TG-T--C--AT-GT-TATGTTT---C-AGGA---AAAT---TGTTCT-CCCCT-TTT-GCTCTTTACTTtctttcttcttttttttt
gi|5 : catgcagtaaTGCAG-C------TGACTGAGGTACCC-CAAGAACAAGTTATATCTGT-GTTAATATGAACCAA---ATT-TTAAAT-------AA-------CAGATTCCCTAAT--------TT--------TTAA-TCG-A-TGTCTTCG-TGAATTTCGACCCCAAGACAGGTGTTCCCC-TTAAAA--AG-T-GCTATTGTAAA-TTCT--T-T--A--TTAG----ATTGTAATCTA------T----CCA-A-A------T---A--TC--AAAA--TAAT-TC---TT--AAG--GACATGCCTGTCTTGA----AG--GACT----TCAAAGAAAAA--GGTTATGTCAAA----------------------------TGGG-AAA-AT---GCTGCT---T----ATG-CCAACT-TTGAAGGTTAA-CTTCAAC-ATTG-TAGA-TA-A-TAAATTACAGGTTT-G-GAATGA-AAAT-AT-G----AAA-----AAAT-CAT-ATGTA-------------TGTACGACTGAAAATTA--CCA--AA-GAAA------C--TTG------C----C-TA--ACT--AA-GC-GACTTTT---T-TCGA---Atgtgacattgatcttttt
gi|6 : GT-ATAAATATGAACCAGCAGGTT-TGTAAA-------AA----------------------------TC--------TTTG-TCG-G-T-TTTTCG-TAGATTTCGACCC-ATGGCAGT-ATTACCC-TTAGAA--A--T-ACTACTGTAGA-TTGT--T-C--T--CAAG----ATTGTAACC------TAT----C-A-A-A-A---T------ACC--AAAA--CAAA-TCT--T---GGG--GGCAAGTCTGCCTTAATTATAG--GACT----TTAAGGCCAAA--ATCTATGTCATAATTGGTGCT--TA---T--------A--TGGGGAAACAC---T--G-----T-------------T-TT-----TTAA-TTTCAAC-A-----------------ATTATAGATTT-A-AAATGA-AAAT-AT-GAAGAAAACG-TCATATACAT-GTATATATGTATGTACACTGTACGTCAGGAAATAA--TTC--AA-GAAT------C--TTG------C------TT-TAAC--AATGC-GACATTTCCCC-CGGA---AATA---TGTTCT-CCtaagaggtattttagtttgttaccctaaattgatct
gi|7 : actgAAAAATGTTG-CCTAAGGTGGATTCGA----ACCA--TGGTAAAATA-TAACCACAACATA------TA----CTA-C------------CGACGGTGTAGACGTGGC-TGACTGAGCT---------CATAAT----ACTCAT-TTAAATATCAAC-AG---ATC-CCCCAA-----------------------------------------------TTTG-TCG-G-T-TTCCCG-TGAAATTCGAATCCAAGACAGG-ATTgcagtagatgtttccttttgttacctgatttgatcttt
gi|8 : tcttttggtcgcacatgtgcttccgtcgaattacgcagaatggaagataatagatcgcccatggcgaggatggttctttttaactgcatttggtagaaaattacaattttgaagcattttatatgaagaatggacataatttaaactaatcattggagaaatatacatatgtagtgtatgacaaaaagtgttggaaatgcgaaataaaaataagactTTTTGTTTTTACAAAAGTGTGG-AATGAAGTGGATTCAA----ACTA--TGACAAAAGTAC--TCGCATTATA------TT----CTG-CT-----------AA-CAGTACAA-C------TGACTGAACTATTC-TAAACACAAGTAACACCCGT-GAAAATATGAACCAG---GTT-TTCAAA-------AAGAATTCCCAA---------TA-------TT--------TTTG-TCA-G-T-TTTTTA-TAACTTTTGACTCCAGGGCAGG-GATGTCC-ATAAAA--A--T-GTTATTG-AA--------T-A--T--CAAA----A---TA----A---ATA------AA-C-A-A---AT---AAAT---AAAC--AAA-----------GGG--GACAGG-CTGCCTTGA----TG--GACT----TAGAAG---------TAATGTTAAAAT------C--TA---T--a
gi|9 : ttaaactggtttattaaaagagaattatacacataattacgcaaaagtgtcgaaaatgcaaaatataaCG-G-G-TTTTCT-TCAAATTTAACTCCAAGGCAAG-GGTACCT-CTAGAG--A------------AAA----------------AAA----A----AACCCA---AT--------A-G-A-A---TA---CAACC---TAT--ATAT-TC---TTA-GGG--GGCACGCCTG------------------------AAAGCCA------TC---TCCAAAT------C--TT---T--ACTTAAA--TGGGG-AA-AT---A--GCTCTTT----AGG-CCAACT-TTGAAGGTTAG-TTTAAAC-ATTA-TGGA-TATATTAGATTATAAG-TT------TCG-AAATAAA-G----AATCGTTGAAA---AT-TCACG-------------TGTACGACGGAA-------CTG--AA-GAAA------T--TTGA--T-A----------TAAC--AATGT-GCCTTTT---T-CAGATACAGAT---C-TTTT-C
blockSeqs : G C A T G . AGA TAATA TA TC A ACGTGGC G CT AGTTATATC TA GCAG C T AGCATGAAACAGGTCCACTAAAA G TT G G T A G ATAT T C GG G TAA GACA T TACATATAATACAAAAATTTTTAA AA AGA AA TTATG CA G T G TTATAG AAAA AG C CTAAATCAAAAAATTGGGGAAAATGGAAGATAG A A T A A T T TTTG TTGGA TC T A GAAGA ACT TATA A TATATGTATGTACAC C GAACTG . GAAACC TT ATCACGTTGTTACC T GT T CCCC TAC AAA C AT G A
blockSeqs : A . A A . AA TCACC TT CC . CCC C CT AGTAACACC A C . A AACAGATTCCCTAATTT . GT . . . A . ATTT T . . . CTT . A TAATATTAATACAATTTTTAA . A A TATAA . G C G AACT . . C CGGTGTTTAGATGGAGGAAATTCCGACTTA . . . . . . . TTAG TTGGA TT . . CA CAT GATA . TA A GCGAA . . . ATCTAAATTCACA T T C TA . . . G . .
blockSeqs : C . T A . A TAACC TA TC . CC A T GGTAA A C . A AAGAATTCCCAATATT . A . . . A . GTC C . . . T . G TACCAGTATCAAAATA . A A TTAG . A C G ATAG . . C CTTTACTTAAATGGGGAAATAGCTCTTTAG . . . . . . . TAA TTTGG TC . . G CAT AGTC . TA C GCGA . . . ATATCACAGTGTC . G T TC . . . A . .
blockSeqs : . G G . A GGAAA CA CT . A C T AGACC G G . A CAGTTTAAACAGTT . A . . . T . CCT T . . . T . T CAATGCTAAAATTAA . A A TTA . G T G AT . . C ATAGAAAACAGTTCAAAACAGTGTATAG . . . . . . . TTG TTTAA TC . . G CAT AATA . TG C ACCA . . . ATACGTGTACC . T T T . . . A .
blockSeqs : . C G . A AATA TA C . T C T AGACC A A . T AACATTT . G . . . A . AGT T . . . G . T TAACAAAATATCGA . A A TTA . G T A AT . . T CTAAATCAAAAAATGGGGAAAATGGTAG . . . . . . . TTG TTCT TC . . A CGT TATA . GG A ATTC . . . ATACGTGTACC . T C T . . . T .
blockSeqs : . A . . A TATA TA C . C C C ATACT T G . T AACATTT . C . . . G . AT T . . . G . T AATAAACAAATAA . A A TTA . G C G AA . . T TGGTGCTTATATGGGGAAACACTGT . . . . . . . TTC TGGA TG . . C AT TAA . TA A GCG . . . CCTAACT . T G T . . .
blockSeqs : GTAC TT . . C C T . G G . G AATC . A . . . T . AT T . . . G . T CAATAGAATACA . C T TTG . T C A AG . . A TGGGAAAATGCTGCTTAT . . . . . . . TAA TT TG . . C AA TAA . TA T ACT . . . CTTTAAC . G T C . . .
blockSeqs : C . . . . . . C A . G . . . G . AT T . . . T . T GTTTGAAAAAT . T A TA . A T G AG . . C TTAG . . . . . . . . AA TC . . G AT AAT . CG A CTG . . . ATATAAC . G A T . .
blockSeqs : C . . . . T . . G . . . T . AT . . . . A . T TATCCAAATA . C T T . G C . TG . . . . . . . . . . . TT C . . G CG AT . G . . . . . ATATG . G T T .
blockSeqs : . G . . . T . A . . . . T . T AACCAATAT . A . G . C . . . . . . T . . . G . AA .
blockSeqs : G . . . T . . . . . . T . T TATCAAGAT . A . . . . . . .
blockSeqs : . . . A . . . . . . . . . TATCAAAAT . .
blockSeqs : . G . . . . . .
blockSeqCons : **** A** TAACN TA********** CC************ T* G*** AACATTT**************************************** AG****** TTGA*** TC G***** NATA TG************* ATACGTGTACC*********** T****
originalCons : TTTTNTTTTTACAAAAGTGTGG-CNTGAGGCGGATTCGA----ACCA-ATGGCAAAATAACAATCGCAGCATA------TA----CTG-C------------AG-CGGTGCAG-C----C-TGACTGAGCTACTC-TAAGCACAAG----ACCCGT-ATAAATATGAACCAG---GTT-TNCAAA-------AA-------CA----------T--------TT--------TTTG-TCG-G-T-TTTTCG-TGAATTTCGACCCCAAGGCAGG-GNTGCCC-CTAAAA--A--T-ACTATTGTAAA-TTGT--T-C--T--TAAG----ATTGTAACCTA---ATAT----CAA-A-A-A---TT---AAATC--AAAA--AAAA-TC---T---GGG--GACAGGCCTGCCTTGA----AG--GACT----TCAAAGCCAAA--ATTCATGTCAAAAT------C--TA---T--AA--AAA--TGGGGAAA-AT---G--G-----T----AGG-CCAACT-TTGAAGGTTAA-TTTCAAC-ATTG-TAGA-TA-A-TNGATTATAGG-TT-G-AAATCG-AAAT-AT-G----AAACATTCANATACAT-GTATG-------------TGTACGNCAGAAAATAG--CCG--AA-GAAA------C--TTGA--T-AC----G-TG-TACC--AA-GT-TACNTTT---T-CGGA---AAAT---TGTTTT-CCCGT-NTT-GTCCTTT-CTTATT
finalCons : TTTTNTTTTTACAAAAGTGTGG-CNTGAGGCGGATTCGA----ACCA--TGGCAAAATAACNATCGCAGCATATA----------CTGCC------------AG-CGGTGCAG-C----C-TGACTGAGCTACTCT-AAGCACAAG----ACCCGT-ATAAATATGAACCAG---GTT-TNCAAAAACATTT----------------------------------------TTTG-TCG-G-T-TTTTCG-TGAATTTCGACCCCAAGGCAGG-GNTGCCC-CTAAAA--A--T-ACTATTGTAAA-TTGT--T-C--T--TAAG----ATTGTAACCTA---ATAT----CAA-A-A-A---TT---AAATC--AAAA--AAAA-TC---T---GGG--GACAGGCCTGCCTTGAAG------GACT----TCAAAGCCAAA--ATTCATGTCAAAAT------C--TA---T--AA--AAA--TGGGGAAA-AT---G--G-----T----AGG-CCAACT-TTGAAGGTTAA-TTTCAAC-ATTG-TAGA-TA-A-TNGATTATAGGTTGA---AATCG-AAAT-ATG-----AAACATTCANATACAT-GTATG-------------TGTACGNCAGAAAATAG--CCG--AA-GAAA------C--TTGATACGTGTACC-----------AA-GT-TACNTTTT----CGGA---AAAT---TGTTTT-CCCGT-NTT-GTCCTTT-CTTATT
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|21 ): ATAACAATGTGACTTTTTCAATGGTATTTTCTTTTGTTACCCTGAATTGATCCCTTTCCTCGAAATCTT
Unaligned ( gi|22 ): GATCTTATAACAATCGTGATTTTTCACATTGGTAAATTTTCTTTTGTTACCCTGAATTGATCCTTTCC
Unaligned ( gi|23 ): ACAATATGACTATTTCTGGGAAATTGTTTTCTCTTAGAAATGTTTTCTTTTGTTACTCTGAATTGAT
Alignments
lowQualScore : 11111 11 111111111111 22222222222 33333333 222222222 1111 77777777777777777777777777777777777777777777777 1111111 11111 55555555555555555555555555555555 22222222 22222222 99999999999999999999999999999999999999999999999999999999 1111 1111111 111111 111 1111 222222222222222 22222222 111111 3333333333333333333333 11111 1
lowQualScore : 1 8 5 1 1 0 44444 99 44 77 555555555555 1 33333333333 44444444 2 99 444444444 77 0 8888 4 1 66666666666666666666666666666666666666666666666 3 444 3 3 2 1 3 3333333 0 3 2 0 33 2 11111 6666 1 99999999999999999999999999999999 0 44 666 44 77777777 44 2 2 0 2 11111111 7777 0 55 3 00000000000000000000000000000000000000000000000000000000 4 4 4 4 4 0 4 4 2222 7777777 22 3 3 111111 000 2222 3 777777777777777 2 77777777 4 111111 55 2222222222222222222222 8 44 1 33333 777 777 5 77 6 0
lowQualScore : . . . . . . ..... .. .. .. ............ . ........... ........ . .. ......... .. . .... . . ............................................... . ... . . . . . ....... . . . . .. . ..... .... . ................................ . .. ... .. ........ .. . . . . ........ .... . .. . ........................................................ . . . . . . . . .... ....... .. . . ...... ... .... . ............... . ........ . ...... .. ...................... . .. . ..... ... ... . .. . .
lowQualScore : 0 8 7 0 7 4 33333 22 55 00 444444444444 7 88888888888 77777777 5 77 888888888 99 7 1111 0 0 33333333333333333333333333333333333333333333333 6 888 1 1 9 0 1 8888888 7 4 9 7 99 9 11111 1111 6 22222222222222222222222222222222 1 22 555 88 77777777 66 3 9 8 3 55555555 1111 2 00 5 55555555555555555555555555555555555555555555555555555555 0 0 0 0 0 5 0 0 4444 6666666 66 6 6 111111 666 2222 6 222222222222222 4 77777777 0 555555 55 9999999999999999999999 0 66 0 99999 000 888 0 77 7 0
consensus : TTTTNTTTTTACAAAAGTGTGG-CNTGAGGCGGATTCGA-----ACCA--TGGCAAAATAACAATCGCAGCATA------TA----CTGCC-----------AGCGGTGCAG-C----C-TGACTGAGCTACTC-TAAGCACAAG----ACCCGT-ATAAATATGAACCAG---GTT-TNCAAA-------AA-------CA----------T--------TT--------TTTG-TCG-G-T-TTTTCG-TGAATTTCGACCCCAAGGCAGG-GNTGCCC-CTAAAA--A--T-ACTATTGTAAA-TTGT--T-C--T--TAAG----ATTGTAACCTA---ATAT----CAA-A-A-A---TT---AAATC--AAAA--AAAA-TC---T---GGG--GACAGGCCTGCCTTGA----AG--GACT----TCAAAGCCAAA--ATTCATGTCAAAAT------C--TA---T--AA--AAA--TGGGGAAA-AT---G--G-----T----AGG-CCAACT-TTGAAGGTTAA-TTTCAAC-ATTG-TAGA-TA-A-TNGATTATAGG-TT-G-AAATCG-AAAT-AT-G----AAACATTCANATACAT-GTATG-------------TGTACGNCAGAAAATAG--CCG--AA-GAAA------C--TTGA--T-AC----G-TG-TACC--AA-GT-TACNTTT---T-CGGA---AAAT---TGTTTT-CCCGT-NTT-GTCCTTT-CTTATT
Reference ( family-668 ) : TTTTNTTTTTACAAAAGTGTGG-CNTGAGGCGGATTCGA-----ACCA--TGGCAAAATAACNATCGCAGCATA------TA----CTGCC-----------AGCGGTGCAG-C----C-TGACTGAGCTACTC-TAAGCACAAG----ACCCGT-ATAAATATGAACCAG---GTT-TNCAAA-------AA-------CA----------T--------TT--------TTTG-TCG-G-T-TTTTCG-TGAATTTCGACCCCAAGGCAGG-GNTGCCC-CTAAAA--A--T-ACTATTGTAAA-TTGT--T-C--T--TAAG----ATTGTAACCTA---ATAT----CAA-A-A-A---TT---AAATC--AAAA--AAAA-TC---T---GGG--GACAGGCCTGCCTTGA----AG--GACT----TCAAAGCCAAA--ATTCATGTCAAAAT------C--TA---T--AA--AAA--TGGGGAAA-AT---G--G-----T----AGG-CCAACT-TTGAAGGTTAA-TTTCAAC-ATTG-TAGA-TA-A-TNGATTATAGG-TT-G-AAATCG-AAAT-AT-G----AAACATTCANATACAT-GTATG-------------TGTACGNCAGAAAATAG--CCG--AA-GAAA------C--TTGA--T-AC----G-TG-TACC--AA-GT-TACNTTT---T-CGGA---AAAT---TGTTTT-CCCGT-NTT-GTCCTTT-CTTATT
gi|1 : AAAATTGTGG-TGCGAGTCGGATTCGATTCGAACTA--TGGCAAAA-AGTTATCGCAACATAAAATTCTAATCGCTGCTTCAACTCCTATAGCGGTGCA-------T-T--CTAAGC-ACTC--AAATGTAAT----ACTGGT-ATAAATATGAACCAGCAGGTT-TGTAAA-------AA----------------------------TC--------TTTG-TCG-G-T-TTTTCG-TAGATTTCGACCC-ATGGCAGT-ATTACCC-TTAGAA--A--T-ACTACTGTAGA-TTGT--T-C--T--CAAG----ATTGTAACC------TAT----C-A-A-A-A---T------ACC--AAAA--CAAA-TCT--T---GGG--GGCAAGTCTGCCTTAATTATAG--GACT----TTAAGGCCAAA--ATCTATGTCA
gi|10 : tgtccttccgccgagtaacacagtatgaatgattaatgtccttggaagaaatataccacgattaatgactgcttaaattgtataatatcactgaatgtcttttgtgtagagtaaactagattatggaaggaagatacatgtatgtagatatttatataagatacaaaaaaaaaacaacgtgttgaaggtgggaaatagaagtA----------T--------TTA-------TTTA-TCT-A-T-TTTTTGGTGAAAGTCTTCCCCAGGGCAAG-GATGTTC-CTGAAA--G--TCACC--TGTAAA-TTTT--T-C--T--TAAG----CTTGCAACCTACCAGTAT----CAA-A-A------T---A--TC--ATAA-------TT---T----------CAGGTCTACCCT-A----AT--GACT----TCAAAGTCAA----------TTACAAT------G--TA---G--AA--AAA----------------------------------CTAACT-CTAAAGATTGA-TTTCAGC-ATTG-CAAA-TA-A-TAAATTGTAAT-TT-T-AAA-----------------AAAAATTTAA--ACAT-ACA-----------------CACGGCAAATAATAA--TCC--AGTGAAA------C--TTGA--T-AT----A--G-CAACGGAA-AT-T-CATTT------GGT---AAAT---TG-TTC-CCCGT-TTT-CTCTTt
gi|11 : aA-TTGT--T-C-------AG----AATGTAATATA---A-------CAA-A-ATA---TC---GAG----AGAG--AAAA-TC---TT--AAA--GGCTGGCCTGTCTTG---------GACT----TTCCAGCCAAA--ATTCACGTCAAAGT------T--TA--------------------------------------------GG-TCAACT-TTGAAGGTTAT-TTTCATC-ATTG-TAGA-TT-A-TAAATTGTAGG-T-------TCG---AT-AT-G----AAA-ATTCATATATACAGTGTA-------------TTTA---CAGAAAA-AGAACTG--AA-CAAA------C--TTGA--T-AT----G----------AA-ATGTATTTTT---TACGGA---AAAT---Tgttaccctaaattgat
gi|12 : -TTTTCA-GGAATTTTGACCCCCAG-CAAG-GATGACC-CTAAA----------CAGTCTCCA-TTGT--T-T--TAATAAGGACAAGCCT-ACCCA---ATG-----CTA-A-A-A---TT---AAAGC--CAAA--Actggggcattcatatttctt
gi|12 : gG--GACAAGCCTACCC--A----AT--G-CTAAAATTAAAGCCAAA--ATT-GTGCCAAAAT------A--TA---G--AA--AAC--AGTTCAAA-AC---A--G-----TGTATAGG-ACAACT-TTGAAAATTAG-TTTCAGC-ATTG-TAAA-TA-A----ATTTTAGG-TT-C-TAATTGTAAAT-TT-G----AAAACTTCAGATATAT-ATAttgtgccaaaatatagaaaacagttcaaaacagtgtataggacaactttgaaaattagtttcagcattgtaaataaattttaggttctaattgtaaatttgaaaacttcagatatatatactttaaaaaaaatcaact
gi|13 : gttttcaggaattttgacccccagcaaggatgaccctaaacagtctccattgttttaataaCAAAATAATAATCACAGCTTA------TA----CTGTC-----------AGCCGTGTAA-A------TGAGTGAGCTATTC-TAAGCACAGG----TAATAT-ATTAATATGAACCA----GTT-TTCAAA-------AG-------CA----------TGAAACAGGTCCACTAAAATTTA-TAGTT-T-TTTTCG-TGAATTTCTACGCCAAGGTAGA-AATGCCT-CTA------------------AAA-TTGT--T-CCTT--TAAG----ATTGAAAT------GTTT----GAA-A-A-A---T------ATC--GAAA--AAGA-TC---T---ctttaaaaaaaatcaact
gi|14 : acttaaataatcaAAAGTGTGG-CTTGAGGCGGATTCAA-----ACt
gi|15 : tttttcgccgtggcagacgtgctcccgtcgtgtaaagcagaatgaatgatgattattgtcttgagggggaaactatctgagttcttttgtaatacattttatataaaaatggatatgcatttaaactaaattcaaatgtgaaataaaagataacaatgGGAA-AT---G--G-----T----AGG-CCAACT-TTGAAGGTTAA-TTTTAAC-ATTG-TAAATTA-A-TTGATTATCGG-TTGG-AAATCG-AAAT-ATCA----AAACATTCATA-ACAT-GTA-G-------------TGTATGCCAGAAAATAG---CGAAAA-GAAA------C--TTAA--T-AC----G-TG-TACC--AA-AT-TATCTTT---T-CGAA---AAAC---TGTTTT-CCCGTATTT-GTCCTTT-
gi|16 : TTA-AAATGTGTGG-CACGAGGCACATCCGA-----ACCA--TGACAAAATCACCGT-GCAACGTA------TT----CTGCC-----------AG-GGTGCAG------T-TGACTGAGC
gi|17 : tttatttaaaaaatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttatgagtatgaaaaaaagttgaaattgcaaaagaaaacaTAACCATCACAGCATA------TA----CTGTC-----------AGTGGTGCAG-C----------TGAGCTATTC-TA--CACA--------------TAAGTAT------------T-TACAAA-------A----------------------------------------TTA-T---A-T-TTTTCA-AGAATTTCAATTCCTAGGCATG-GTTGCCT-CTAAGAATA--T-ATTATGGCAAA-TTGT--T-T--T--TGAA----ATTGTAACC------TAT----CAA-
gi|18 : ATCATAGG-TT-------CA-AAAT-TT-A----AAAAA---AAGTCTAT-GTATA-------------TGTACAACAG-AAATA--------AA-GAAA------C--ATGATCT-AA----A-TT-CACA--AT-GT-GACTTTT---TCCGGA---AAATAAATCTTTT-CTTTT-GTT-ACCCT
gi|19 : acGGATTTAGACTCCAAAGCAGG-TATGCCC-CTAAAAC-C--T-GTTATTGTAAACTTGT--T-C--G--T-AG----ATTGTAACC-A-----AC----CAA----------T---ATATC--AAAAAGAAAA-TCTTAT---GGGCAGACAG----GCCTTGA----AACTTATT----TCAAAGCaaattgaccctttcc
gi|2 : TTTTTTTTTTACA----TTTGAACTTG---C--ATCTTA-----ACTAGATTACAGAAGGAAAATCACAGCATA------CA----GTG-------------AACAGTGTAG-C----CCTGA--GAGCTACTCCTTAGTACAAG----ACCCGT-ATAAATATAAACCAC---GTC-TACAAA-------AA-------CA----------T--------TT--------TTTGGTCG-G-T-TTTTCG-TGAATTTCGACCCCAAGGCTGA-GGTGTCC-CTAAAA--A--T-ACTATAATAAA-TTGT--T-C--G--TAAG----TTTGCAACTTA---ATAT----TAATACA-A---TTTTTAAATT--AAAA--AAAAATC---T---AGG--GACAGGTCTGTTTTGA----AA--GATT----TCAAAGTCAAA--ATTCATGTCAAAAT------C--TAAA-TCAAA--AAA--TGGGGAAA-AT---G--G-----T----AGG-CCAACT-TTGAAGGTTAA-TTTTAAC-ATTG-TAAA-TA-A-TTGATTATCGG-TT-GGAAATCG-AAAT-AT-C----AAACATTCAAATACAT-GTATG-------------TGTATGCCAGAAAATAG--CGA--AA-GAAA------C--TTAA--T-AC----G-TG-TACC--AA-AT-TACTTTT---T-CGAA---AAAC---TGTTTT-CCCGT-ATTGGTCCTTT-CTTATTt
gi|20 : TTAAAAGAGTGTTG-CGTGAGGCAGATTCAA-----AGCA--TGGCAAAA-AATAATCACAGCATA------TA----
gi|3 : taattaaataagatatgaaaaagtgttgaaatgcgaaataaaaaa-C----C-TGAA-GAGCTACTCCTTAGTACAAG----ACCCGTTATAAATATAAACCAC---GTCCTACAAA-------AA-------CA----------T--------TT--------TTTG-TCG-GTT-TTTTCG--GAATTTCGACCCCAAGGTGAG-GTTGTCC-CGAAAA--ATTT-ACTATCA-AAA-TTGTGGTGC--G--TAAG-----TTGCAAACTAC--ATATAATACAA-A-A-ATTTTT---AAATTAAAAAA--AAAA-CC---TATAAGG--AACA-GTCTGTTTTGAAT--AG--GATT----TCAAAGTCAAAAGATTCATGTCAAAAT------C--TAAATC--AA--AAAATTGGGGAAA-AT---G--GAAGA-T----AGGACCAACTATTGAGAGTTAATTTTTAACAATTGATAAA-TA-ATTTGATTATCGG-TG-G-AAATCG-AAAT-AT-C----AAACATTCATA-ACAT-GTAGG-------------TGTATGCCAGAAAATAG---CG--AA-GAAAGAAACCT--TTAA--TCAC----GTTGTTACC--AA-AT-TACCTTT---T-C-GA---AAAC---TGTTTTCCCCGT-ATT-GTCCTTT-CTTATTaat
gi|4 : acagtgttataagcC-----------AGCAGTGCAG-C------TAACTGAGCTATCT-TAAGCACA---------CGT--------TGAACAAG---GTA-TTCGAACAGTTTAAA-------CA----------G--------TT--------T-----CC-C-T-TTTTCG-TGAATTTCGACCTCAAGGCAGG-GGTGCCCGTTTAAA--A--T-ACTATTGTAAA-TT-T--T-C--T--GATG----ATTGTACTC------TAT----C-A-A-G-A---T------ATC--CAAA--CAAA-TCT--T---AGT--GACAGACCTTTCTTAA----AG--GAAT----TCAAATCCCAA--ATTCATTTCAAAAT------CGGTG---T--TT--AGA--TGGAGGAA-ATTCCG--ACT---T----A-G-CCAACT-TTGAAGATCAT-TATCAAC-ATTG-CAGA-CA-A-TTCGTAATA------A-AAA--G-AAAT-AC-G----GAA-ATTCA-AT------TATA-------------TGTACGACTGAAAATAA--CT----------------CTTTTGA--T-ATCACAG-TG-T--C--AT-GT-TATGTTT---C-AGGA---AAAT---TGTTCT-CCCCT-TTT-GCTCTTTACTTtctttcttcttttttttt
gi|5 : catgcagtaaTGCAG-C------TGACTGAGGTACCC-CAAGAACAAGTTATATCTGT-GTTAATATGAACCAA---ATT-TTAAAT-------AA-------CAGATTCCCTAAT--------TT--------TTAA-TCG-A-TGTCTTCG-TGAATTTCGACCCCAAGACAGGTGTTCCCC-TTAAAA--AG-T-GCTATTGTAAA-TTCT--T-T--A--TTAG----ATTGTAATCTA------T----CCA-A-A------T---A--TC--AAAA--TAAT-TC---TT--AAG--GACATGCCTGTCTTGA----AG--GACT----TCAAAGAAAAA--GGTTATGTCAAA----------------------------TGGG-AAA-AT---GCTGCT---T----ATG-CCAACT-TTGAAGGTTAA-CTTCAAC-ATTG-TAGA-TA-A-TAAATTACAGGTTT-G-GAATGA-AAAT-AT-G----AAA-----AAAT-CAT-ATGTA-------------TGTACGACTGAAAATTA--CCA--AA-GAAA------C--TTG------C----C-TA--ACT--AA-GC-GACTTTT---T-TCGA---Atgtgacattgatcttttt
gi|6 : GT-ATAAATATGAACCAGCAGGTT-TGTAAA-------AA----------------------------TC--------TTTG-TCG-G-T-TTTTCG-TAGATTTCGACCC-ATGGCAGT-ATTACCC-TTAGAA--A--T-ACTACTGTAGA-TTGT--T-C--T--CAAG----ATTGTAACC------TAT----C-A-A-A-A---T------ACC--AAAA--CAAA-TCT--T---GGG--GGCAAGTCTGCCTTAATTATAG--GACT----TTAAGGCCAAA--ATCTATGTCATAATTGGTGCT--TA---T--------A--TGGGGAAACAC---T--G-----T-------------T-TT-----TTAA-TTTCAAC-A-----------------ATTATAGATTT-A-AAATGA-AAAT-AT-GAAGAAAACG-TCATATACAT-GTATATATGTATGTACACTGTACGTCAGGAAATAA--TTC--AA-GAAT------C--TTG------C------TT-TAAC--AATGC-GACATTTCCCC-CGGA---AATA---TGTTCT-CCtaagaggtattttagtttgttaccctaaattgatct
gi|7 : actgAAAAATGTTG-CCTAAGGTGGATTCGA-----ACCA--TGGTAAAAT-ATAACCACAACATA------TA----CTACC-----------GACGGTGTAGACGTGGC-TGACTGAGCT---------CATAAT----ACTCAT-TTAAATATCAA-CAG---ATC-CCCCAA-----------------------------------------------TTTG-TCG-G-T-TTCCCG-TGAAATTCGAATCCAAGACAGG-ATTgcagtagatgtttccttttgttacctgatttgatcttt
gi|8 : tcttttggtcgcacatgtgcttccgtcgaattacgcagaatggaagataatagatcgcccatggcgaggatggttctttttaactgcatttggtagaaaattacaattttgaagcattttatatgaagaatggacataatttaaactaatcattggagaaatatacatatgtagtgtatgacaaaaagtgttggaaatgcgaaataaaaataagactTTTTGTTTTTACAAAAGTGTGG-AATGAAGTGGATTCAA-----ACTA--TGACAAAAGTAC--TCGCATTATA------TT----CTGCT-----------AACAGTACAA-C------TGACTGAACTATTC-TAAACACAAGTAACACCCGT-GAAAATATGAACCAG---GTT-TTCAAA-------AAGAATTCCCAA---------TA-------TT--------TTTG-TCA-G-T-TTTTTA-TAACTTTTGACTCCAGGGCAGG-GATGTCC-ATAAAA--A--T-GTTATTG-AA--------T-A--T--CAAA----A---TA----A---ATA------AA-C-A-A---AT---AAAT---AAAC--AAA-----------GGG--GACAGG-CTGCCTTGA----TG--GACT----TAGAAG---------TAATGTTAAAAT------C--TA---T--a
gi|9 : ttaaactggtttattaaaagagaattatacacataattacgcaaaagtgtcgaaaatgcaaaatataaCG-G-G-TTTTCT-TCAAATTTAACTCCAAGGCAAG-GGTACCT-CTAGAG--A------------AAA----------------AAA----A----AACCCA---AT--------A-G-A-A---TA---CAACC---TAT--ATAT-TC---TTA-GGG--GGCACGCCTG------------------------AAAGCCA------TC---TCCAAAT------C--TT---T--ACTTAAA--TGGGG-AA-AT---A--GCTCTTT----AGG-CCAACT-TTGAAGGTTAG-TTTAAAC-ATTA-TGGA-TATATTAGATTATAAG-TT------TCG-AAATAAA-G----AATCGTTGAAA---AT-TCACG-------------TGTACGACGGAA-------CTG--AA-GAAA------T--TTGA--T-A----------TAAC--AATGT-GCCTTTT---T-CAGATACAGAT---C-TTTT-C
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|21 ): ATAACAATGTGACTTTTTCAATGGTATTTTCTTTTGTTACCCTGAATTGATCCCTTTCCTCGAAATCTT
Unaligned ( gi|22 ): GATCTTATAACAATCGTGATTTTTCACATTGGTAAATTTTCTTTTGTTACCCTGAATTGATCCTTTCC
Unaligned ( gi|23 ): ACAATATGACTATTTCTGGGAAATTGTTTTCTCTTAGAAATGTTTTCTTTTGTTACTCTGAATTGAT