lowQualScore : 1 222 1 111 111 111111111 3333 3333333333333333 1
lowQualScore : 6 6 777 1 3 777 4 55 7 333 222 3 44 4 777777777 2 44 3 3 6 2 2 0000 5 33 2 1 2222222222222222 3 44 888888 3 3 44 0
lowQualScore : . . ... . . ... . .. . ... ... . .. . ......... . .. . . . . . .... . .. . . ................ . .. ...... . . .. .
lowQualScore : 4 0 888 5 7 888 0 00 3 666 888 3 66 6 333333333 8 66 1 1 2 9 9 8888 7 99 9 4 3333333333333333 1 22 888888 1 1 22 0
consensus : ATTATTCTTCTT-CTT--NTTNTTNTTATTCTCCGG---TAC-TTT--T-T---GTCCC-GAAG-TGTTCTCAGA--ACCTG-------T-ACATGG--G-ATCGATA-TGAAA-CCTTTTTAG-G-ATGAT-A-GTA-TA--TCA-TTTG--AA-----GG---TGTTCGG-AA--CGA------T-AGT-CA--TTTT-TCT
Reference ( gi|4 ) : ATTATTCTTCTT-CTT--ATTATTATTATTCTCCGG---TAC-TTT--T-T---GTCTC-GAAG-TGTTCTCAGA--ACCTG-------T-ACATGG--G-ATCGATA-TGAAA-CCTTTTTAG-G-ATGA--A-GTA-TA--TCA-TCTG--AA-----GG---T-TTCGG-AA--CGA------T-AGT-CA--TTTT-TCT
gi|1 : ATTATTCTTCTT-CTTTTCTTCTTCTTATTCTCCGG---TAC-TTT--T-T---GTCCC-GAAGCTGTTCTCAGA--A-CTG-------TGACA-----G-GTTGATA-TGAAA-CCTTTTTAG-G-ATGAT-A-GTATTAATTCA-TCTGA-AA-----GG---TGTTCGGTAA--CGA------T-AGT-CA--TTTT-TCT
gi|2 : aagtcttccgtctatcaacggagagcctatagtgaatgtattgtcttattttattattattttccccatttcaaaatatcaattactacccaaatcgcctgaatcgattttcatcattttcgcaatgtaagttgttcttgtcatatagatgtatttataaaatttcgttttttgaaaaatccacttgttcggaagaatcaacttcgggttttttgtcgttcgtccgccgagtggtgtttatagattgtttgagttgaaaaatggaaaattttaaggatgatagacaattatgtagtgttctctggtaccattacatttttgctgcaacacttccctgtcgtaaagaaaaggcctactttcgttttcataaaaatatttaatttttgaatttgtttttttattgttgaaatactttgtctcttgtatatgcaaagtatagaaataagattgatcactgaacataaatatgttaaaaaaaaatttaatcgggtccgcgccttacaaagttctctgctactttcactttgttaataattttgtaccggtaaacgcaattactgaatagaaacgcttcatagaagtttgaatgattttctgcatgctaatccatgttctttatatgatgtattaatgaaaacgccggttttttgaaaaatttcttcggtcacgacgatatccgacttccgtttaaattttatctgggcgttttcgtcatgagatcattatgattaacaaataaatttttcagtgatgatagacctatatgctaggatgttaaagatacaagcgttactaacttgcggcgacatttactacctcttttcaggagaaaggatctactttcgttttgtgaaattcatcaatttcgttcattttacagttttttttttcgaatttcgtaagaggttaagatttatatatgttcatagttaaatgtgaatattttacttcgggctatcacttgataaactcatcgcattttacgattgcgatattaattcattcaggacggagacctttttgtttgtcgcgacaactaagcgtctagtcttTTATTTCT-TT-CTTC-ATT-CTATTCATCTCCGGACTTAT-TTCAGT-T---GTCCCTGAAG-T-TTCTCAGATTACCTG-------TTACATGG--A-ATCGATATTGAAACCCTTTTTAGTGCATG-----TTATTA--TCATTCTG--AAAAGT-GG---C-TTCGG--A--CAAATCGGTT-AGT-CA--TTTT-TTTggaaa
gi|3 : aattatcTATTGTTTTTACTG--TTTCTTTTTCTTCTTTGG---CAC-TTT--TGT---GTCCA-GAGG-TGTCCTCAGA--ACTTA-------G-ACACAG--A-ATCAATA-TGAAA-CCTTTTTAG-C-ATGAT-A-GTA-TA--TCA-TTTGTCAA-----TG-----TTCGG-AA--TGA------T-AGT-CA--TTTTATCTttctcttgaaaaatgc
gi|8 : aACTCTGTTT-CTT--GTTATTATTAATCTCCAG---CAC-TTT--T-TA--GTCCT-GAAG-TGTTCTCAGA--ACCTA-------A-AC-TGA--A-ACTTTTA-TGAA--------TAG-G-ATGAT-A-GTA-TA--TTA-TTTGTAAA-----TG---T-GCC-A-AA--CGA------T-AGT-CA--TTTTGTCTga
gi|6 : TTCTTCTTTCTT--CTCTTCTTTATTCTCCGG---TAC-TTT--T-T---GTC-C-GAAG-TGTTCTCAGA--A-CTG-------T-ACAT-G--G-ATCG-TA-TG--A-CCTTTTTAG-G-ATGAT-A-GTA-TA--TCA-TCTG--AA-----GG---TGTTCGG-AA--CGA------T-AGT-CA--TTTT-TCg
gi|7 : TATTATTATTCTCCTG---TAC-TTT--T-TT--GTCCG-GAAG-TGTTCTCAGA--ACCTGAATCATGT-GCATGG--G-ATTGATA-TGAGA-CCTTTTTAG-G-ATGAT-A-GTA-TA--TTA-TTAG--TA-----GG---TGTTTGG-AA--CGA------T-AGT-AA--TTTT-TTTgaaa
gi|9 : CTCCGG---TAC-TTT--TTT---GTCTC-GAAG-TGTTCTCAGA--A-CTG-------T-ACATGGCCA-ATCCTTC-TGAAA-CCTTTTTAG-C-ATGA--ATGAA-T---TCA-TTTG--AA-----GGTGTT-TTCGA-AC--TGA------T-AGTCCA--TTTT-tct
gi|11 : CGG---CACATTT--T-T---GTCCG-GGAG-TGTTCTCGGA--AACTA-------C-AAAAGG--G-ATTGATA-TGAAA-CCTTTACAG-G-ATGAT-A-GTT-TA--TCA-TTTG--TA-----GA---TGTGCAG-AA--CGA------T-GGT-CA--TTTTGTCTtctga
gi|10 : ggGG---TAC-TTT--T-TTTTGTCCC-GAAG-TGTTCTCAGA--ACCTG-------T-ACATGG--GAATCGATA-TGAAA-CCTTTTTAG-G-ATGAT-A-GTA-TA--TCA-TCTG--AA-----GG---TGTTCGG-AA--CGA------TAAGT-CA--TTTT-TCTg
gi|12 : -TTT--T-T---GTCTG-GAAG-TCTTCTCAGA--ACCTA-------C-AGAAGG--G-ATCGATA-TGAAA-CCTTC-------AT------------------TTTG--TA-----GG---TGTTCGG-AA--CGA------T-AGT-AA--TTTT-gaa
gi|13 : ctTC--T-T---GTCCG-GAAC-TGTTCTCAGA--ACCTA-------A-ACAAGG--G-ATTGATA-TGAAA-CCTATGTAG-A-AT----------------A-TTTG--TA-----GA---TGTGCAG-AA--CG---------AGT-CA--TTTtctga
gi|14 : AG-TGTTCTCAGA--ACCTG-------T-ACATGG--G-ATCGGTA-TGAA-----CTTTAG-G-ATGATTG-GT--TA--TCA-TTTG--AA-----GG---TGTTCGG-AA--CGA------T-AGT-CA--TTTT-TCgtgt
gi|16 : cg-ATTGATA-TGAAGTCTTTTTTAA-G-ATGAT-G-GCA-TA--TCA-TTTG--
gi|17 : TTT-G-G-ATGAT-A-GTA-TA--TCA-TTTG--TACATGTGG---TGTTCGG-AAAGCGT------A-AGT-CATCTTTT-TCTtctatgtgcagagtgacggtatttttgtca
4 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|5 ): TCAACGCCAAAAATGAATTGCTTAATTTTATTCATCTAAGAGTCATCATTGAACATCGGATATCAATCAAGATATATTCTTCATAATCCACGGAAGACCTCTCGTTGCTCGGCAACGAGATCGAATCTAGTTTTATTCTT
Unaligned ( gi|15 ): ATTGATCACTGAATACAGAATATATTAAAATAAATTTAATCGGGTCACGCGTTACCAAGTTAGCTGCTACTTTCACTTTTTTTTTA
Unaligned ( gi|18 ): AGTTTTGGAATCGAACATACTGTTATAACACTGTCTT
Unaligned ( gi|19 ): GAACCATACTGTTTTTTGTAAAGCTTTGCTTTTCT
Alignments
lowQualScore : 1 111 111111111 111
lowQualScore : 3 3 1 77 1 1 777 3 44 3 555 99 3 44 555555555 1 44 2 2 33 2 2 2 5 33 2 222 66666 77 2 33 777777 2 2 33 8
lowQualScore : . . . .. . . ... . .. . ... .. . .. ......... . .. . . .. . . . . .. . ... ..... .. . .. ...... . . .. .
lowQualScore : 7 3 0 99 0 0 000 6 66 3 888 22 1 22 333333333 9 22 9 9 66 7 7 7 3 77 7 111 77777 33 7 77 777777 7 7 77 6
consensus : ATTATTCTTCTT-CTTNT--TNTTATTATTCTCCGG---TAC-TTT--T-T---GTCCC-GAAG-TGTTCTCAGA--ACCTG-------T-ACATGG--GA-TCGATA-TGAAA-CCTTTTT-AGGATG-A-TAGTA-TA--TCATT-TG--NA-----GGTG--TTCGG-AA--CGA------T-AGT-CA--TTTT-TCT
Reference ( family-6619 ) : ATTATTCTTCTT-CTTNT--TNTTNTTATTCTCCGG---TAC-TTT--T-T---GTCCC-GAAG-TGTTCTCAGA--ACCTG-------T-ACATGG--GA-TCGATA-TGAAA-CCTTTTT-AGGATG-A-TAGTA-TA--TCATT-TG--AA-----GGTG--TTCGG-AA--CGA------T-AGT-CA--TTTT-TCT
gi|1 : ATTATTCTTCTT-CTTTTCTTCTTCTTATTCTCCGG---TAC-TTT--T-T---GTCCC-GAAGCTGTTCTCAGA--A-CTG-------TGACA-----GG-TTGATA-TGAAA-CCTTTTT-AGGATG-A-TAGTATTAATTCATC-TGA-AA-----GGTG--TTCGGTAA--CGA------T-AGT-CA--TTTT-TCT
gi|10 : aagtcttccgtctatcaacggagagcctatagtgaatgtattgtcttattttattattattttccccatttcaaaatatcaattactacccaaatcgcctgaatcgattttcatcattttcgcaatgtaagttgttcttgtcatatagatgtatttataaaatttcgttttttgaaaaatccacttgttcggaagaatcaacttcgggttttttgtcgttcgtccgccgagtggtgtttatagattgtttgagttgaaaaatggaaaattttaaggatgatagacaattatgtagtgttctctggtaccattacatttttgctgcaacacttccctgtcgtaaagaaaaggcctactttcgttttcataaaaatatttaatttttgaatttgtttttttattgttgaaatactttgtctcttgtatatgcaaagtatagaaataagattgatcactgaacataaatatgttaaaaaaaaatttaatcgggtccgcgccttacaaagttctctgctactttcactttgttaataattttgtaccggtaaacgcaattactgaatagaaacgcttcatagaagtttgaatgattttctgcatgctaatccatgttctttatatgatgtattaatgaaaacgccggttttttgaaaaatttcttcggtcacgacgatatccgacttccgtttaaattttatctgggcgttttcgtcatgagatcattatgattaacaaataaatttttcagtgatgatagacctatatgctaggatgttaaagatacaagcgttactaacttgcggcgacatttactacctcttttcaggagaaaggatctactttcgttttgtgaaattcatcaatttcgttcattttacagttttttttttcgaatttcgtaagaggttaagatttatatatgttcatagttaaatgtgaatattttacttcgggctatcacttgataaactcatcgcattttacgattgcgatattaattcattcaggacggagacctttttgtttgtcgcgacaactaagcgtctagtcttGG---TAC-TTT--T-TTTTGTCCC-GAAG-TGTTCTCAGA--ACCTG-------T-ACATGG--GAATCGATA-TGAAA-CCTTTTT-AGGATG-A-TAGTA-TA--TCATC-TG--AA-----GGTG--TTCGG-AA--CGA------TAAGT-CA--TTTT-TCTggaaa
gi|11 : CGG---CACATTT--T-T---GTCCG-GGAG-TGTTCTCGGA--AACTA-------C-AAAAGG--GA-TTGATA-TGAAA-CCTTTAC-AGGATG-A-TAGTT-TA--TCATT-TG--TA-----GATG--TGCAG-AA--CGA------T-GGT-CA--TTTTGTCTgaa
gi|12 : gg-TTT--T-T---GTCTG-GAAG-TCTTCTCAGA--ACCTA-------C-AGAAGG--GA-TCGATA-TGAAA-CCTTC------AT-----------------TT-TG--TA-----GGTG--TTCGG-AA--CGA------T-AGT-AA--TTTT-g
gi|13 : ctTC--T-T---GTCCG-GAAC-TGTTCTCAGA--ACCTA-------A-ACAAGG--GA-TTGATA-TGAAA-CCTATGT-AGAAT----------------ATT-TG--TA-----GATG--TGCAG-AA--CG---------AGT-CA--TTTtctga
gi|14 : AG-TGTTCTCAGA--ACCTG-------T-ACATGG--GA-TCGGTA-TGAA-----CTTT-AGGATG-ATTGGT--TA--TCATT-TG--AA-----GGTG--TTCGG-AA--CGA------T-AGT-CA--TTTT-TCgtgt
gi|16 : cgA-TTGATA-TGAAG-TCTTTTTTAAGATG-A-TGGCA-TA--TCATT-TG--TC-----TATG--TGCAG-AG--TGA------C-GGT--A--TTTT-
gi|17 : TTT--GGATG-A-TAGTA-TA--TCATT-TG--TACATGTGGTG--TTCGG-AAAGCGT------A-AGT-CATCTTTT-TCTgtca
gi|2 : TTATTTCT-TT-CTTCA--TTCTATTCATCTCCGGACTTAT-TTCAGT-T---GTCCCTGAAG-T-TTCTCAGATTACCTG-------TTACATGG--AA-TCGATATTGAAACCCTTTTT-AG--TGCA-TGTTATTA--TCATTCTGA-AA-----AGTGGCTTCGG--A--CAAATCGGTT-AGT-CA--TTTT-TTTgaaaatg
gi|3 : aattatcTATTGTTTTTACTGTT--TCTTTTTCTTCTTTGG---CAC-TTT--TGT---GTCCA-GAGG-TGTCCTCAGA--ACTTA-------G-ACACAG--AA-TCAATA-TGAAA-CCTTTTT-AGCATG-A-TAGTA-TA--TCATT-TGTCAA-------TG--TTCGG-AA--TGA------T-AGT-CA--TTTTATCTttctcttgaaaaatgc
gi|4 : aATTATTCTTCTT-CTTAT--TATTATTATTCTCCGG---TAC-TTT--T-T---GTCTC-GAAG-TGTTCTCAGA--ACCTG-------T-ACATGG--GA-TCGATA-TGAAA-CCTTTTT-AGGATG-A--AGTA-TA--TCATC-TG--AA-----GGT---TTCGG-AA--CGA------T-AGT-CA--TTTT-TCTga
gi|6 : TTCTTCTTTCTTCT--CTTCTTTATTCTCCGG---TAC-TTT--T-T---GTCC--GAAG-TGTTCTCAGA--AC-TG-------T-ACATGG---A-TCG-TA-TGA---CCTTTTT-AGGATG-A-TAGTA-TA--TCATC-TG--AA-----GGTG--TTCGG-AA--CGA------T-AGT-CA--TTTT-TC
gi|7 : --TATTATTATTCTCCTG---TAC-TTT--T-TT--GTCCG-GAAG-TGTTCTCAGA--ACCTGAATCATGT-GCATGG--GA-TTGATA-TGAGA-CCTTTTT-AGGATG-A-TAGTA-TA--TTATT-AG--TA-----GGTG--TTTGG-AA--CGA------T-AGT-AA--TTTT-TTTgaaa
gi|8 : ACTCTGTTT-CTTGT--TATTATTAATCTCCAG---CAC-TTT--T-TA--GTCCT-GAAG-TGTTCTCAGA--ACCTA-------A-AC-TGA--AA-CTTTTA-TGAA--------T-AGGATG-A-TAGTA-TA--TTATT-TG--TA-----AATG--TGCCA-AA--CGA------T-AGT-CA--TTTTGTCTtct
gi|9 : CTCCGG---TAC-TTT--T-TT--GTCTC-GAAG-TGTTCTCAGA--A-CTG-------T-ACATGGCCAA-TCCTTC-TGAAA-CCTTTTT-AGCATG-A-ATGAA-T---TCATT-TG--AA-----GGTGTTTTCGA-AC--TGA------T-AGTCCA--TTTT-g
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|5 ): TCAACGCCAAAAATGAATTGCTTAATTTTATTCATCTAAGAGTCATCATTGAACATCGGATATCAATCAAGATATATTCTTCATAATCCACGGAAGACCTCTCGTTGCTCGGCAACGAGATCGAATCTAGTTTTATTCTT
Unaligned ( gi|15 ): ATTGATCACTGAATACAGAATATATTAAAATAAATTTAATCGGGTCACGCGTTACCAAGTTAGCTGCTACTTTCACTTTTTTTTTA
Unaligned ( gi|18 ): AGTTTTGGAATCGAACATACTGTTATAACACTGTCTT
Unaligned ( gi|19 ): GAACCATACTGTTTTTTGTAAAGCTTTGCTTTTCT
Alignments
lowQualScore : 1 111 111111111
lowQualScore : 3 3 1 77 1 1 777 3 44 3 555 99 3 44 555555555 1 44 2 2 33 2 2 2 5 33 2 77777777 77 2 33 777777 2 2 33 8
lowQualScore : . . . .. . . ... . .. . ... .. . .. ......... . .. . . .. . . . . .. . ........ .. . .. ...... . . .. .
lowQualScore : 7 3 0 99 0 9 000 6 66 3 888 22 1 22 333333333 9 22 9 9 66 7 7 7 3 77 7 22222222 33 7 77 777777 7 7 77 6
consensus : ATTATTCTTCTT-CTTNT--TNTTATTATTCTCCGG---TAC-TTT--T-T---GTCCC-GAAG-TGTTCTCAGA--ACCTG-------T-ACATGG--GA-TCGATA-TGAAA-CCTTTTT-AGGATG-A-TAGTA-TA--TCATT-TG-NA-----GGTG--TTCGG-AA--CGA------T-AGT-CA--TTTT-TCT
Reference ( family-6619 ) : ATTATTCTTCTT-CTTNT--TNTTATTATTCTCCGG---TAC-TTT--T-T---GTCCC-GAAG-TGTTCTCAGA--ACCTG-------T-ACATGG--GA-TCGATA-TGAAA-CCTTTTT-AGGATG-A-TAGTA-TA--TCATT-TG-NA-----GGTG--TTCGG-AA--CGA------T-AGT-CA--TTTT-TCT
gi|1 : ATTATTCTTCTT-CTTTTCTTCTTCTTATTCTCCGG---TAC-TTT--T-T---GTCCC-GAAGCTGTTCTCAGA--A-CTG-------TGACA-----GG-TTGATA-TGAAA-CCTTTTT-AGGATG-A-TAGTATTAATTCATC-TGAAA-----GGTG--TTCGGTAA--CGA------T-AGT-CA--TTTT-TCT
gi|10 : aagtcttccgtctatcaacggagagcctatagtgaatgtattgtcttattttattattattttccccatttcaaaatatcaattactacccaaatcgcctgaatcgattttcatcattttcgcaatgtaagttgttcttgtcatatagatgtatttataaaatttcgttttttgaaaaatccacttgttcggaagaatcaacttcgggttttttgtcgttcgtccgccgagtggtgtttatagattgtttgagttgaaaaatggaaaattttaaggatgatagacaattatgtagtgttctctggtaccattacatttttgctgcaacacttccctgtcgtaaagaaaaggcctactttcgttttcataaaaatatttaatttttgaatttgtttttttattgttgaaatactttgtctcttgtatatgcaaagtatagaaataagattgatcactgaacataaatatgttaaaaaaaaatttaatcgggtccgcgccttacaaagttctctgctactttcactttgttaataattttgtaccggtaaacgcaattactgaatagaaacgcttcatagaagtttgaatgattttctgcatgctaatccatgttctttatatgatgtattaatgaaaacgccggttttttgaaaaatttcttcggtcacgacgatatccgacttccgtttaaattttatctgggcgttttcgtcatgagatcattatgattaacaaataaatttttcagtgatgatagacctatatgctaggatgttaaagatacaagcgttactaacttgcggcgacatttactacctcttttcaggagaaaggatctactttcgttttgtgaaattcatcaatttcgttcattttacagttttttttttcgaatttcgtaagaggttaagatttatatatgttcatagttaaatgtgaatattttacttcgggctatcacttgataaactcatcgcattttacgattgcgatattaattcattcaggacggagacctttttgtttgtcgcgacaactaagcgtctagtcttGG---TAC-TTT--T-TTTTGTCCC-GAAG-TGTTCTCAGA--ACCTG-------T-ACATGG--GAATCGATA-TGAAA-CCTTTTT-AGGATG-A-TAGTA-TA--TCATC-TG-AA-----GGTG--TTCGG-AA--CGA------TAAGT-CA--TTTT-TCTggaaa
gi|11 : CGG---CACATTT--T-T---GTCCG-GGAG-TGTTCTCGGA--AACTA-------C-AAAAGG--GA-TTGATA-TGAAA-CCTTTAC-AGGATG-A-TAGTT-TA--TCATT-TG-TA-----GATG--TGCAG-AA--CGA------T-GGT-CA--TTTTGTCTgaa
gi|12 : gg-TTT--T-T---GTCTG-GAAG-TCTTCTCAGA--ACCTA-------C-AGAAGG--GA-TCGATA-TGAAA-CCTTC------AT-----------------TT-TG-TA-----GGTG--TTCGG-AA--CGA------T-AGT-AA--TTTT-g
gi|13 : ctTC--T-T---GTCCG-GAAC-TGTTCTCAGA--ACCTA-------A-ACAAGG--GA-TTGATA-TGAAA-CCTATGT-AGAAT----------------ATT-TG-TA-----GATG--TGCAG-AA--CG---------AGT-CA--TTTtctga
gi|14 : AG-TGTTCTCAGA--ACCTG-------T-ACATGG--GA-TCGGTA-TGAA-----CTTT-AGGATG-ATTGGT--TA--TCATT-TG-AA-----GGTG--TTCGG-AA--CGA------T-AGT-CA--TTTT-TCgtgt
gi|16 : cgA-TTGATA-TGAAG-TCTTTTTTAAGATG-A-TGGCA-TA--TCATT-TG-TC-----TATG--TGCAG-AG--TGA------C-GGT--A--TTTT-
gi|17 : TTT--GGATG-A-TAGTA-TA--TCATT-TG-TACATGTGGTG--TTCGG-AAAGCGT------A-AGT-CATCTTTT-TCTgtca
gi|2 : TTATTTCT-TT-CTTCA--TTCTATTCATCTCCGGACTTAT-TTCAGT-T---GTCCCTGAAG-T-TTCTCAGATTACCTG-------TTACATGG--AA-TCGATATTGAAACCCTTTTT-AG--TGCA-TGTTATTA--TCATTCTGAAA-----AGTGGCTTCGG--A--CAAATCGGTT-AGT-CA--TTTT-TTTgaaaatg
gi|3 : aattatcTATTGTTTTTACTGTT--TCTTTTTCTTCTTTGG---CAC-TTT--TGT---GTCCA-GAGG-TGTCCTCAGA--ACTTA-------G-ACACAG--AA-TCAATA-TGAAA-CCTTTTT-AGCATG-A-TAGTA-TA--TCATT-TG-TC-----AATG--TTCGG-AA--TGA------T-AGT-CA--TTTTATCTttctcttgaaaaatgc
gi|4 : aATTATTCTTCTT-CTTAT--TATTATTATTCTCCGG---TAC-TTT--T-T---GTCTC-GAAG-TGTTCTCAGA--ACCTG-------T-ACATGG--GA-TCGATA-TGAAA-CCTTTTT-AGGATG-A--AGTA-TA--TCATC-TG-AA-----GGT---TTCGG-AA--CGA------T-AGT-CA--TTTT-TCTga
gi|6 : TTCTTCTTTCTTCT--CTTCTTTATTCTCCGG---TAC-TTT--T-T---GTCC--GAAG-TGTTCTCAGA--AC-TG-------T-ACATGG---A-TCG-TA-TGA---CCTTTTT-AGGATG-A-TAGTA-TA--TCATC-TG-AA-----GGTG--TTCGG-AA--CGA------T-AGT-CA--TTTT-TC
gi|7 : --TATTATTATTCTCCTG---TAC-TTT--T-TT--GTCCG-GAAG-TGTTCTCAGA--ACCTGAATCATGT-GCATGG--GA-TTGATA-TGAGA-CCTTTTT-AGGATG-A-TAGTA-TA--TTATT-AG-TA-----GGTG--TTTGG-AA--CGA------T-AGT-AA--TTTT-TTTgaaa
gi|8 : ACTCTGTTT-CTTGT--TATTATTAATCTCCAG---CAC-TTT--T-TA--GTCCT-GAAG-TGTTCTCAGA--ACCTA-------A-AC-TGA--AA-CTTTTA-TGAA--------T-AGGATG-A-TAGTA-TA--TTATT-TG-TA-----AATG--TGCCA-AA--CGA------T-AGT-CA--TTTTGTCTtct
gi|9 : CTCCGG---TAC-TTT--T-TT--GTCTC-GAAG-TGTTCTCAGA--A-CTG-------T-ACATGGCCAA-TCCTTC-TGAAA-CCTTTTT-AGCATG-A-ATGAA-T---TCATT-TG-AA-----GGTGTTTTCGA-AC--TGA------T-AGTCCA--TTTT-g
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|5 ): TCAACGCCAAAAATGAATTGCTTAATTTTATTCATCTAAGAGTCATCATTGAACATCGGATATCAATCAAGATATATTCTTCATAATCCACGGAAGACCTCTCGTTGCTCGGCAACGAGATCGAATCTAGTTTTATTCTT
Unaligned ( gi|15 ): ATTGATCACTGAATACAGAATATATTAAAATAAATTTAATCGGGTCACGCGTTACCAAGTTAGCTGCTACTTTCACTTTTTTTTTA
Unaligned ( gi|18 ): AGTTTTGGAATCGAACATACTGTTATAACACTGTCTT
Unaligned ( gi|19 ): GAACCATACTGTTTTTTGTAAAGCTTTGCTTTTCT
Alignments
lowQualScore : 1 111 111111111
lowQualScore : 3 3 1 77 1 1 777 3 44 3 555 99 3 44 555555555 1 44 2 2 33 2 2 2 5 33 2 77777777 77 2 33 777777 2 2 33 8
lowQualScore : . . . .. . . ... . .. . ... .. . .. ......... . .. . . .. . . . . .. . ........ .. . .. ...... . . .. .
lowQualScore : 7 3 0 99 0 9 000 6 66 3 888 22 1 22 333333333 9 22 9 9 66 7 7 7 3 77 7 22222222 33 7 77 777777 7 7 77 6
consensus : ATTATTCTTCTT-CTTNT--TNTTATTATTCTCCGG---TAC-TTT--T-T---GTCCC-GAAG-TGTTCTCAGA--ACCTG-------T-ACATGG--GA-TCGATA-TGAAA-CCTTTTT-AGGATG-A-TAGTA-TA--TCATT-TG-NA-----GGTG--TTCGG-AA--CGA------T-AGT-CA--TTTT-TCT
Reference ( family-6619 ) : ATTATTCTTCTT-CTTNT--TNTTATTATTCTCCGG---TAC-TTT--T-T---GTCCC-GAAG-TGTTCTCAGA--ACCTG-------T-ACATGG--GA-TCGATA-TGAAA-CCTTTTT-AGGATG-A-TAGTA-TA--TCATT-TG-NA-----GGTG--TTCGG-AA--CGA------T-AGT-CA--TTTT-TCT
gi|1 : ATTATTCTTCTT-CTTTTCTTCTTCTTATTCTCCGG---TAC-TTT--T-T---GTCCC-GAAGCTGTTCTCAGA--A-CTG-------TGACA-----GG-TTGATA-TGAAA-CCTTTTT-AGGATG-A-TAGTATTAATTCATC-TGAAA-----GGTG--TTCGGTAA--CGA------T-AGT-CA--TTTT-TCT
gi|10 : aagtcttccgtctatcaacggagagcctatagtgaatgtattgtcttattttattattattttccccatttcaaaatatcaattactacccaaatcgcctgaatcgattttcatcattttcgcaatgtaagttgttcttgtcatatagatgtatttataaaatttcgttttttgaaaaatccacttgttcggaagaatcaacttcgggttttttgtcgttcgtccgccgagtggtgtttatagattgtttgagttgaaaaatggaaaattttaaggatgatagacaattatgtagtgttctctggtaccattacatttttgctgcaacacttccctgtcgtaaagaaaaggcctactttcgttttcataaaaatatttaatttttgaatttgtttttttattgttgaaatactttgtctcttgtatatgcaaagtatagaaataagattgatcactgaacataaatatgttaaaaaaaaatttaatcgggtccgcgccttacaaagttctctgctactttcactttgttaataattttgtaccggtaaacgcaattactgaatagaaacgcttcatagaagtttgaatgattttctgcatgctaatccatgttctttatatgatgtattaatgaaaacgccggttttttgaaaaatttcttcggtcacgacgatatccgacttccgtttaaattttatctgggcgttttcgtcatgagatcattatgattaacaaataaatttttcagtgatgatagacctatatgctaggatgttaaagatacaagcgttactaacttgcggcgacatttactacctcttttcaggagaaaggatctactttcgttttgtgaaattcatcaatttcgttcattttacagttttttttttcgaatttcgtaagaggttaagatttatatatgttcatagttaaatgtgaatattttacttcgggctatcacttgataaactcatcgcattttacgattgcgatattaattcattcaggacggagacctttttgtttgtcgcgacaactaagcgtctagtcttGG---TAC-TTT--T-TTTTGTCCC-GAAG-TGTTCTCAGA--ACCTG-------T-ACATGG--GAATCGATA-TGAAA-CCTTTTT-AGGATG-A-TAGTA-TA--TCATC-TG-AA-----GGTG--TTCGG-AA--CGA------TAAGT-CA--TTTT-TCTggaaa
gi|11 : CGG---CACATTT--T-T---GTCCG-GGAG-TGTTCTCGGA--AACTA-------C-AAAAGG--GA-TTGATA-TGAAA-CCTTTAC-AGGATG-A-TAGTT-TA--TCATT-TG-TA-----GATG--TGCAG-AA--CGA------T-GGT-CA--TTTTGTCTgaa
gi|12 : gg-TTT--T-T---GTCTG-GAAG-TCTTCTCAGA--ACCTA-------C-AGAAGG--GA-TCGATA-TGAAA-CCTTC------AT-----------------TT-TG-TA-----GGTG--TTCGG-AA--CGA------T-AGT-AA--TTTT-g
gi|13 : ctTC--T-T---GTCCG-GAAC-TGTTCTCAGA--ACCTA-------A-ACAAGG--GA-TTGATA-TGAAA-CCTATGT-AGAAT----------------ATT-TG-TA-----GATG--TGCAG-AA--CG---------AGT-CA--TTTtctga
gi|14 : AG-TGTTCTCAGA--ACCTG-------T-ACATGG--GA-TCGGTA-TGAA-----CTTT-AGGATG-ATTGGT--TA--TCATT-TG-AA-----GGTG--TTCGG-AA--CGA------T-AGT-CA--TTTT-TCgtgt
gi|16 : cgA-TTGATA-TGAAG-TCTTTTTTAAGATG-A-TGGCA-TA--TCATT-TG-TC-----TATG--TGCAG-AG--TGA------C-GGT--A--TTTT-
gi|17 : TTT--GGATG-A-TAGTA-TA--TCATT-TG-TACATGTGGTG--TTCGG-AAAGCGT------A-AGT-CATCTTTT-TCTgtca
gi|2 : TTATTTCT-TT-CTTCA--TTCTATTCATCTCCGGACTTAT-TTCAGT-T---GTCCCTGAAG-T-TTCTCAGATTACCTG-------TTACATGG--AA-TCGATATTGAAACCCTTTTT-AG--TGCA-TGTTATTA--TCATTCTGAAA-----AGTGGCTTCGG--A--CAAATCGGTT-AGT-CA--TTTT-TTTgaaaatg
gi|3 : aattatcTATTGTTTTTACTGTT--TCTTTTTCTTCTTTGG---CAC-TTT--TGT---GTCCA-GAGG-TGTCCTCAGA--ACTTA-------G-ACACAG--AA-TCAATA-TGAAA-CCTTTTT-AGCATG-A-TAGTA-TA--TCATT-TG-TC-----AATG--TTCGG-AA--TGA------T-AGT-CA--TTTTATCTttctcttgaaaaatgc
gi|4 : aATTATTCTTCTT-CTTAT--TATTATTATTCTCCGG---TAC-TTT--T-T---GTCTC-GAAG-TGTTCTCAGA--ACCTG-------T-ACATGG--GA-TCGATA-TGAAA-CCTTTTT-AGGATG-A--AGTA-TA--TCATC-TG-AA-----GGT---TTCGG-AA--CGA------T-AGT-CA--TTTT-TCTga
gi|6 : TTCTTCTTTCTTCT--CTTCTTTATTCTCCGG---TAC-TTT--T-T---GTCC--GAAG-TGTTCTCAGA--AC-TG-------T-ACATGG---A-TCG-TA-TGA---CCTTTTT-AGGATG-A-TAGTA-TA--TCATC-TG-AA-----GGTG--TTCGG-AA--CGA------T-AGT-CA--TTTT-TC
gi|7 : --TATTATTATTCTCCTG---TAC-TTT--T-TT--GTCCG-GAAG-TGTTCTCAGA--ACCTGAATCATGT-GCATGG--GA-TTGATA-TGAGA-CCTTTTT-AGGATG-A-TAGTA-TA--TTATT-AG-TA-----GGTG--TTTGG-AA--CGA------T-AGT-AA--TTTT-TTTgaaa
gi|8 : ACTCTGTTT-CTTGT--TATTATTAATCTCCAG---CAC-TTT--T-TA--GTCCT-GAAG-TGTTCTCAGA--ACCTA-------A-AC-TGA--AA-CTTTTA-TGAA--------T-AGGATG-A-TAGTA-TA--TTATT-TG-TA-----AATG--TGCCA-AA--CGA------T-AGT-CA--TTTTGTCTtct
gi|9 : CTCCGG---TAC-TTT--T-TT--GTCTC-GAAG-TGTTCTCAGA--A-CTG-------T-ACATGGCCAA-TCCTTC-TGAAA-CCTTTTT-AGCATG-A-ATGAA-T---TCATT-TG-AA-----GGTGTTTTCGA-AC--TGA------T-AGTCCA--TTTT-g
blockSeqs : T A C . T A ACT A AG G TTT CT . TT AATCATGT T CC A T AC T C T T . C TACATGT GC . AG ATCGGT A C TC G
blockSeqs : C T T . C T . . . . T C . . TT A . . . A . . . . . . AAA TT . . . . . . A
blockSeqs : C . A . A A . . . . A G . . T A . . . A . . . . . . AA . . . . . . . G
blockSeqs : T . C . T T . . . . T G . . C A . . . A . . . . . . TA . . . . . . . .
blockSeqs : . . G . A A . . . . . G . . C T . . . A . . . . . . TA . . . . . . . .
blockSeqs : . A A . . . . . A . . A T . . . G . . . . . . TA . . . . . . . .
blockSeqs : . . . . . C . . T C . . . A . . . . . . AA . . . . . . . .
blockSeqs : . . . . . G . . G T . . . A . . . . . . TC . . . . . . . .
blockSeqs : . . . . . T . . T T . . . A . . . . . . TC . . . . . . . .
blockSeqs : . . . . C . . T T . . . A . . . . . . AA . . . . . . . .
blockSeqs : . . . . . . A T . . . . . . . . . . AA . . . . . . . .
blockSeqs : . . T T . . . . . . . . . . TA . . . . . . . .
blockSeqs : . . . . . . . . . TA . . . . . . . .
blockSeqs : . . . . . . AA . . . . . . .
blockSeqCons : ** N******** ** TA******
originalCons : ATTATTCTTCTT-CTTNT--TNTTATTATTCTCCGG---TAC-TTT--T-T---GTCCC-GAAG-TGTTCTCAGA--ACCTG-------T-ACATGG--GA-TCGATA-TGAAA-CCTTTTT-AGGATG-A-TAGTA-TA--TCATT-TG-NA-----GGTG--TTCGG-AA--CGA------T-AGT-CA--TTTT-TCT
finalCons : ATTATTCTTCTT-CTTNT--TNTTATTATTCTCCGG---TAC-TTT--T-T---GTCCC-GAAG-TGTTCTCAGA--ACCTGN--------ACATGG--GA-TCGATA-TGAAA-CCTTTTT-AGGATG-A-TAGTA-TA--TCATT-TGTA------GGTG--TTCGG-AA--CGA------T-AGT-CA--TTTT-TCT
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|5 ): TCAACGCCAAAAATGAATTGCTTAATTTTATTCATCTAAGAGTCATCATTGAACATCGGATATCAATCAAGATATATTCTTCATAATCCACGGAAGACCTCTCGTTGCTCGGCAACGAGATCGAATCTAGTTTTATTCTT
Unaligned ( gi|15 ): ATTGATCACTGAATACAGAATATATTAAAATAAATTTAATCGGGTCACGCGTTACCAAGTTAGCTGCTACTTTCACTTTTTTTTTA
Unaligned ( gi|18 ): AGTTTTGGAATCGAACATACTGTTATAACACTGTCTT
Unaligned ( gi|19 ): GAACCATACTGTTTTTTGTAAAGCTTTGCTTTTCT
Alignments
lowQualScore : 1 111 1111111
lowQualScore : 3 3 1 77 1 1 777 3 44 3 555 99 3 44 777 0000000 1 44 2 2 33 2 2 2 5 33 2 99999999 77 2 33 777777 2 2 33 8
lowQualScore : . . . .. . . ... . .. . ... .. . .. ... ....... . .. . . .. . . . . .. . ........ .. . .. ...... . . .. .
lowQualScore : 7 3 0 99 0 9 000 6 66 3 888 22 1 22 222 0000000 9 22 9 9 66 7 7 7 3 77 7 33333333 33 7 77 777777 7 7 77 6
consensus : ATTATTCTTCTT-CTTNT--TNTTATTATTCTCCGG---TAC-TTT--T-T---GTCCC-GAAG-TGTTCTCAGA--ACCTG-N-A-------CATGG--GA-TCGATA-TGAAA-CCTTTTT-AGGATG-A-TAGTA-TA--TCATT-TG-NA-----GGTG--TTCGG-AA--CGA------T-AGT-CA--TTTT-TCT
Reference ( family-6619 ) : ATTATTCTTCTT-CTTNT--TNTTATTATTCTCCGG---TAC-TTT--T-T---GTCCC-GAAG-TGTTCTCAGA--ACCTG-N-A-------CATGG--GA-TCGATA-TGAAA-CCTTTTT-AGGATG-A-TAGTA-TA--TCATT-TG-TA-----GGTG--TTCGG-AA--CGA------T-AGT-CA--TTTT-TCT
gi|1 : ATTATTCTTCTT-CTTTTCTTCTTCTTATTCTCCGG---TAC-TTT--T-T---GTCCC-GAAGCTGTTCTCAGA--A-CTGTG-A-------CA-----GG-TTGATA-TGAAA-CCTTTTT-AGGATG-A-TAGTATTAATTCATC-TGAAA-----GGTG--TTCGGTAA--CGA------T-AGT-CA--TTTT-TCT
gi|10 : aagtcttccgtctatcaacggagagcctatagtgaatgtattgtcttattttattattattttccccatttcaaaatatcaattactacccaaatcgcctgaatcgattttcatcattttcgcaatgtaagttgttcttgtcatatagatgtatttataaaatttcgttttttgaaaaatccacttgttcggaagaatcaacttcgggttttttgtcgttcgtccgccgagtggtgtttatagattgtttgagttgaaaaatggaaaattttaaggatgatagacaattatgtagtgttctctggtaccattacatttttgctgcaacacttccctgtcgtaaagaaaaggcctactttcgttttcataaaaatatttaatttttgaatttgtttttttattgttgaaatactttgtctcttgtatatgcaaagtatagaaataagattgatcactgaacataaatatgttaaaaaaaaatttaatcgggtccgcgccttacaaagttctctgctactttcactttgttaataattttgtaccggtaaacgcaattactgaatagaaacgcttcatagaagtttgaatgattttctgcatgctaatccatgttctttatatgatgtattaatgaaaacgccggttttttgaaaaatttcttcggtcacgacgatatccgacttccgtttaaattttatctgggcgttttcgtcatgagatcattatgattaacaaataaatttttcagtgatgatagacctatatgctaggatgttaaagatacaagcgttactaacttgcggcgacatttactacctcttttcaggagaaaggatctactttcgttttgtgaaattcatcaatttcgttcattttacagttttttttttcgaatttcgtaagaggttaagatttatatatgttcatagttaaatgtgaatattttacttcgggctatcacttgataaactcatcgcattttacgattgcgatattaattcattcaggacggagacctttttgtttgtcgcgacaactaagcgtctagtcttGG---TAC-TTT--T-TTTTGTCCC-GAAG-TGTTCTCAGA--ACCTG-T-A-------CATGG--GAATCGATA-TGAAA-CCTTTTT-AGGATG-A-TAGTA-TA--TCATC-TG-AA-----GGTG--TTCGG-AA--CGA------TAAGT-CA--TTTT-TCTggaaa
gi|11 : CGG---CACATTT--T-T---GTCCG-GGAG-TGTTCTCGGA--AACTA-C-A-------AAAGG--GA-TTGATA-TGAAA-CCTTTAC-AGGATG-A-TAGTT-TA--TCATT-TG-TA-----GATG--TGCAG-AA--CGA------T-GGT-CA--TTTTGTCTgaa
gi|12 : gg-TTT--T-T---GTCTG-GAAG-TCTTCTCAGA--ACCTA-C-A-------GAAGG--GA-TCGATA-TGAAA-CCTTC------AT-----------------TT-TG-TA-----GGTG--TTCGG-AA--CGA------T-AGT-AA--TTTT-g
gi|13 : ctTC--T-T---GTCCG-GAAC-TGTTCTCAGA--ACCTA-A-A-------CAAGG--GA-TTGATA-TGAAA-CCTATGT-AGAAT----------------ATT-TG-TA-----GATG--TGCAG-AA--CG---------AGT-CA--TTTtctga
gi|14 : AG-TGTTCTCAGA--ACCTG-T-A-------CATGG--GA-TCGGTA-TGAA-----CTTT-AGGATG-ATTGGT--TA--TCATT-TG-AA-----GGTG--TTCGG-AA--CGA------T-AGT-CA--TTTT-TCgtgt
gi|16 : cgA-TTGATA-TGAAG-TCTTTTTTAAGATG-A-TGGCA-TA--TCATT-TG-TC-----TATG--TGCAG-AG--TGA------C-GGT--A--TTTT-
gi|17 : TTT--GGATG-A-TAGTA-TA--TCATT-TG-TACATGTGGTG--TTCGG-AAAGCGT------A-AGT-CATCTTTT-TCTgtca
gi|2 : TTATTTCT-TT-CTTCA--TTCTATTCATCTCCGGACTTAT-TTCAGT-T---GTCCCTGAAG-T-TTCTCAGATTACCTG-TTA-------CATGG--AA-TCGATATTGAAACCCTTTTT-AG--TGCA-TGTTATTA--TCATTCTGAAA-----AGTGGCTTCGG--A--CAAATCGGTT-AGT-CA--TTTT-TTTgaaaatg
gi|3 : aattatcTATTGTTTTTACTGTT--TCTTTTTCTTCTTTGG---CAC-TTT--TGT---GTCCA-GAGG-TGTCCTCAGA--ACTTA-G-A-------CACAG--AA-TCAATA-TGAAA-CCTTTTT-AGCATG-A-TAGTA-TA--TCATT-TG-TC-----AATG--TTCGG-AA--TGA------T-AGT-CA--TTTTATCTttctcttgaaaaatgc
gi|4 : aATTATTCTTCTT-CTTAT--TATTATTATTCTCCGG---TAC-TTT--T-T---GTCTC-GAAG-TGTTCTCAGA--ACCTG-T-A-------CATGG--GA-TCGATA-TGAAA-CCTTTTT-AGGATG-A--AGTA-TA--TCATC-TG-AA-----GGT---TTCGG-AA--CGA------T-AGT-CA--TTTT-TCTga
gi|6 : TTCTTCTTTCTTCT--CTTCTTTATTCTCCGG---TAC-TTT--T-T---GTCC--GAAG-TGTTCTCAGA--AC-TG-T-A-------CATGG---A-TCG-TA-TGA---CCTTTTT-AGGATG-A-TAGTA-TA--TCATC-TG-AA-----GGTG--TTCGG-AA--CGA------T-AGT-CA--TTTT-TC
gi|7 : --TATTATTATTCTCCTG---TAC-TTT--T-TT--GTCCG-GAAG-TGTTCTCAGA--ACCTG-A-ATCATGTGCATGG--GA-TTGATA-TGAGA-CCTTTTT-AGGATG-A-TAGTA-TA--TTATT-AG-TA-----GGTG--TTTGG-AA--CGA------T-AGT-AA--TTTT-TTTgaaa
gi|8 : ACTCTGTTT-CTTGT--TATTATTAATCTCCAG---CAC-TTT--T-TA--GTCCT-GAAG-TGTTCTCAGA--ACCTA-A-A-------C-TGA--AA-CTTTTA-TGAA--------T-AGGATG-A-TAGTA-TA--TTATT-TG-TA-----AATG--TGCCA-AA--CGA------T-AGT-CA--TTTTGTCTtct
gi|9 : CTCCGG---TAC-TTT--T-TT--GTCTC-GAAG-TGTTCTCAGA--A-CTG-T-A-------CATGGCCAA-TCCTTC-TGAAA-CCTTTTT-AGCATG-A-ATGAA-T---TCATT-TG-AA-----GGTGTTTTCGA-AC--TGA------T-AGTCCA--TTTT-g
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|5 ): TCAACGCCAAAAATGAATTGCTTAATTTTATTCATCTAAGAGTCATCATTGAACATCGGATATCAATCAAGATATATTCTTCATAATCCACGGAAGACCTCTCGTTGCTCGGCAACGAGATCGAATCTAGTTTTATTCTT
Unaligned ( gi|15 ): ATTGATCACTGAATACAGAATATATTAAAATAAATTTAATCGGGTCACGCGTTACCAAGTTAGCTGCTACTTTCACTTTTTTTTTA
Unaligned ( gi|18 ): AGTTTTGGAATCGAACATACTGTTATAACACTGTCTT
Unaligned ( gi|19 ): GAACCATACTGTTTTTTGTAAAGCTTTGCTTTTCT