lowQualScore : 11111111111111111111111
lowQualScore : 11111111111111111111111 2222 1 11 1 111 1 1 4444444444 33 222222222 1111 1 11 1111 3333 11 2222222222 1 1 1 1 11 33333 1 22222 33333333 33333 1 11 11 1 6666666666666666666666666666666666666 2222 1 222222 888888888888888888888888888888888888 1 3333 1111111 444444444444444 11 11 2222222 2222 11 5555555555555 1111 2222 11 1111111 1111111 22222222222222 11 111111111
lowQualScore : 11111111111111111111111 1111 3 88 3 777 3 3 3333333333 22 333333333 4444 0 33 6 4444 4444 33 2 3 9999999999 3 0 0 0 0 33 33333 3 77777 44444444 77777 3 88 33 0 2 6666666666666666666666666666666666666 7777 3 777777 0 3 444444444444444444444444444444444444 0 1111 9999999 6 111111111111111 77 11 0 8 7777777 99 1111 2 99 00 9999999999999 5 5 5 6666 666 5 66 7777 00 8 8 66 8888888 2222222 11111111111111 4 88 4 4 4 66 00 5 666666666 0 5 5 5 5 5
lowQualScore : ....................... .... . .. . ... . . .......... .. ......... .... . .. . .... .... .. . . .......... . . . . . .. ..... . ..... ........ ..... . .. .. . . ..................................... .... . ...... . . .................................... . .... ....... . ............... .. .. . . ....... .. .... . .. .. ............. . . . .... ... . .. .... .. . . .. ....... ....... .............. . .. . . . .. .. . ......... . . . . . .
lowQualScore : 55555555555555555555555 7777 3 33 3 777 3 3 0000000000 55 222222222 8888 0 88 0 8888 8888 88 0 2 8888888888 2 0 0 0 0 88 33333 3 77777 33333333 33333 3 33 88 0 5 4444444444444444444444444444444444444 0000 3 333333 7 7 222222222222222222222222222222222222 0 2222 8888888 4 000000000000000 44 00 8 0 2222222 22 7777 2 33 22 7777777777777 7 0 0 8888 111 0 99 0000 66 9 9 11 1111111 7777777 33333333333333 0 66 4 4 4 11 11 0 111111111 1 0 0 0 0 0
consensus : NNNNNNACTTGT-ATTAAATGTGTCAGCA--TAATAAATATA--TTTATAAAA-GTT--ACA-GAAAAC-A-CG-TG-TGTTTATTTA----TAAA--CTGAAGTGGGCGTATCG--ACA----TCGATACGATCGAT--T-G-GT--TGTTAAA--T-TTG--TTCA--CAAGTGAATAGAAAT------C-T-GAAT-C-G-TGCTACG-C--ATGATTCGG-----GCA-CTTATAA--A--TTTGAATTTCGG--GTTTA-TTAAG-T---ATTCGAA-GTTC--GCTGCTACA--TTGC-AACA-----GA---TTA-CTG----CCCCC-CCC---CAC-CCCACCCCT-C--AC-GTTGT--TT--TTATATANAT---AT-ATAT-T-A--TA--TATATA-ACAC----GTTTAGT-GATGTCG-AG-TTAT-T-T--TGACTTTTTC-TCTTT---T----GTA-GAACG--AATAC-G--TAG--TGAAA--G--A-AATTTTGTNTATTT-GTGAA-T-TGT-GAA-TTAA-AAT-CT-GT-TTGC-T-T-C--A--N-GCA--GGCG-AGC-T--CA--T----CCT----A--TA--C------A-T--GTG-TT-TGTGTT-T-A-T--TTTATAAA-TGA-TTTATG-TCCGG---TTG-AACTGGTG-AATT-AG-AA-CATA
Reference ( gi|4 ) : ATAAAAACTTGTTATCA----TGTCAACAGTTAAGAAATATA--TTTATAAAA-GTT--ACA-GAAAAC-A-CG-TG-TGTTTATTTA----TAA---CTGAAGTGGG-GTATCG--ACA----TCGATACGATCGAT--T-G-GT--TGTTAGA--T-TTG--T-CA--CAGGTGAATAGAAAT------C-T-GAAT-C-G-TGCTACG-C--ATGATTCAG-----GCA-CTTATAA--A--TTTGAATTTCGG--GTTT--TTAAG-C---ATTCGAA-GTTC--GCTGCTACA--TTGC-AACA-----GA---TTA-CTG----CCCCCTCCC---CAC-CCCACCCCT-C--AC-ATTGT--TT--TTATGTACAT---GT-ACAT-T-A--CA-GTAT-TA-ACAC----GTTTAGT-GATGTCG-A--TTAT-T-T--TGACTTTTTC-TCTTT---T----GTA-GAACG--AATAC-G--TAC--TGAAA--G--A-AACTTTGTTTATTT-GTGAA-T-TGTTGAA-TTAA-AAT-CT-GT-TTGC-T-T-C--A--A-GCA--GGCG-AGC-T--CA--T----CCT----A--TA--C------A-T--GTG-TT-TGTGTT-T-A-T--TTTATAAA-TGA-TTTATGTTTCGG---TTG-AACTGGTG-AATT-AG-AA-CATA
gi|3 : ACTTGT-ATTAAATGTGTCAGCA--TA-TAAATATA--T--ATAAAA-GTTTAACA-GAAAAC-AACG-TG-TGTTTATTTA----TAAAAACTGAAGTGGG-----CG---TA----TCGATACGATCGAT--T-GAGT--TGTTAAA--T-TTG--TTCA--CAAGTGAATAGAAAT------C-T-G-CT-C-GATGCTACG-C--ATGATCAGG-----GCA-CTTATAAACA--TTTGAATTTCGGC-GTGT--TAAAG-T---CTTCGAA-GTTC--GCTGCTACT--TTGC-AA-A-----GA---TTA-CTG----CCTACACCCATTCA---CCAACCCT-C--AC-ATTGT--TTAATTGTATATATATAAT-ATAT-C-A--TATATATATA-AT-C----GTTTAGT-GATGTCGTT--TTAT-T-TGATCATTTTTTCATCTTT---T----GTATAAACG--AATAC-G--TAG--TGAAA--G--A-CACTTTGTTTTTTT-GTGAATT-TGTGAAA-TTAA-AAT-CT-G--TTGC-A-T-C--A-----CA--GGCG-AGC-T--CA--T----CCT----A--TC--A------A-T--GTG-TT-TGTGTT-T-A-T--T-----GA-TGATTTTATGTTT-GG---TTG-ACCTGGTGAAATTAAG-AA-CATA
gi|2 : ataacatgcAATAAATATAATCTTATAAAAAGTT--ACCCGAAAACCA-CGATGATGTCTATTTAATATCAA---TTGAAGTGGGCGTATCGCAACAGCAATCGATACGATCGATAAT-G-GTATTGTTAAAATTATTGATT-CAACCAAG-GAATGAAAATAAGATACATAGAAT-C-G-TGCTACGACTAAAGATTCAGAAAAAGCAACTTATAA--AAGCTAGAATATCAGAGGTTTATTTAAG-TGCAATTCGAAAGTTCAAGCTGCTACAAGTTGCCAACA-----GAAAATTATCAG----ACCCA---A---CACGCCCACCACTAC--ACCATTGTAATA--TAATATAAA----AT-AAAT-TGA--TA--TAT-AA-ATACCGATATATAGTAGATGTCG-AGCTTAT-AAT--GGACTTTTT--TCTTTATGTAAGAGTA-AAACG--AAAAC-GGATAG--TGAAA--G--A-AATTTTGTATATTTCGTGAA------------TAA-AAT-CTAGT-CTGC-T-T-C--AATA-GCAAGAGCGAAGCATTACA--TAAAACCC----A--TA---------A-T--ATG-TT-atatcatatgtagttaatatcaaggtctacgatacagtaaaga
gi|8 : ATATA--TTTATAAAA-GTT--ACA-GAAAAC-A-CG-TG-TGTTTATTTA----TAAA--CTGAAGTGGGCGTATCG--ACA----TCGATACGATCGAT--T-G-GT--TGTTAAA--T-TTG--TTCA--CAGGTGAATAGAAAT------C-T-GAAT-CCG-TGCTACG-C--ATGATTCAG-----GTA-CTTATAA--A--TTTGAATTTCGG--GTTTA-TTAAGTC---ATTCTAA-GTTC--GCTGCTACA--TTGC-AACA-----TA---Tggctgtcatggcaaggagagaatcaaatcctaaatacaatgtggttatgtgttatattttataaaatgatttatgattcggaatttgaaactgtgaattagaaacataaacagaaatcatatatattgatta
gi|13 : ttgaattaagtgcatggtgtatgatatAAGTGGGCGTATCG--ACA----TCGATACGATCAAT--TTG-GT--TGTAAAA--T-TTG--TTCA--CAAGTGAATAGAAAT------C-T-GAATCC-G-TGCTACG-C--A
gi|5 : TACA--TTGC-CGCAAAGGAGA---TT--TTGTGCCCCCCCCCCC---CAC-CCCACCCCT-TCTAC-GTTGG--TT--ATATGTACAT---ATTATATAT-AATCA-CTATATATACAC----GTTTATG-GATGTCG-AA-TTAT-T-T---AATTTTCTC-TTTGT---T----GTA-TAACG--A-TACTG--TAG--TGAGAAGG--ACAACTTTGTGTATTT-GTGAA-T-TG-TGAATTTAA-AAT-CT-G--TTGC-T-T-CTGA--A-GCA--GGCGAAGC-T--CA-------CCT----A--TAAGC------ATT--GGG-TT-TGTGTT-T-A-T--TGTATGAA---G-TTTATGTTC--G---T---AACTGGTG-GAAT-AG-AACCATA
gi|10 : -ACAC----GTTTAGT-GGTGCCG-A--TTTA-T-T--TGACTTTCT------T---T----GTA-GAACG--GATAT-G--TTG--TGAAA--G---------TGTCGATAA-A-GAC-A-TGT-GAA-T--A-AAT-GT-ATGTTGC-T-TTC--A--C-GCA--GGCG-AGC-T--CA--T----CCT----A--TA--CCTAAGTA-T--GTG--T-TGTGTT-T-A-T--TTTAtatcataagtagcgttaaatcacaaaggtctacagatacaataagaaa
gi|7 : acacaaccacaaaacacTATAT-T--TGA--TTTTC-T---T---T----GTAAGAATGTCGATTC-GC-TACAGTACAA--GTCATAATTCTGTT-ATT--GTTAA-TATGT--AA-ATAATAATGCT-GA-T-GC-C-T-T--A--GCACA--GGCA-A---C--CAGTT----CCTTATAA--TA--C------G-T--GT--TT-TGAAGT-T-A-TAATTTGTAAAATAA-TTTATGT--CGT---TTT-GACTGGTG-AATT-AG-GA-CATA
gi|1 : tgctttaacgtgcaactaccccaccctccctcccttgatttttctgtgttcttaGAAA--G--A-AATTTTGTATATTT-GTGAA-T-C---------AA-AAT-CT-GT-T-GC-T-T-C--A--C-GCA--GGCG-AGC-T--AA--T----CCT----A--TA--C------A-C--GTG-TC-TGTGTT-T-A-T--TTTATAAA-TGA-TTTATG-TTCGG---TTG-AACTGGTG-AATT-AG-AA-CATAagttgtttttat
gi|2 : -AAT-AT-GT-TGGC-TGT-C--AT-G-GCAA-GGAG-AGAAT--CAAAT----CCT----AAATA--C------AAT--GTGGTTATGTGTTAT-A-T--TTTATAAAATGA-TTTATGATTCGGAATTTGAAACT-GTG-AATT-AGAAA-CATAacattattttaatatgcatggtactaggatgtaaaaagaaatgtgatcgagtaacggattggacataatgggattgagcacagtaagaatcgacaggggcggatcaagtggatgggaggagggggtcgtgaggtaggggatctgaaggccacttcaaggcccccagtgggtcttggtttgagcccccggaaactctttactatttttggtcatttttaatgacgagaacttgaggaaataacatcaataataaagtatctcaggctgtgtatcttagatactttattattggtgttattttctcaagttcaatctttcgaaaatgaaatacgagtaatctcaatactagtaaaagaaacaataaatcaaaagatctcgtccttgatttttctaagagtgggagattaatatccatcgctattttttatggacagacatgaacaaaaagaccatgattaaccttgaattgaaaattagggggggggttgggggtgcgcttcctttaaatccgccaagtgtgctaatctacatgtatatatgcgtgttaattgaaaacataagatatgcttaatttgtttatatggtatatttctagtgtttcattgctgaataaatgttacataactgttgcctttctatgattatggttggaatttatagtacggttcc
gi|14 : aataaatataatcttataaaaagttacccgaaaaccacgatgatgtctatttaatatcaattgaagtgggcgtatcgcaacagcaatcgatacgatcgataatggtattgttaaaattattgattcaaccaaggaatgaaaataagatacatagaatcgtgctacgactaaagattcagaaaaagcaacttataaaagctagaatatcagaggtttatttaagtgcaattcgaaagttcaagctgctacaagttgccaacagaaaattatcagacccaacacgcccaccactacaccattgtaatataatataaaataaattgatatataaataccgatatatagtagatgtcgagcttataatggacttttttctttatgtaagagtaaaacgaaaacggatagtgaaagaaattttgtatatttcgtgaataaaatctagtctgcttcaatagcaagagcgaagcattacataaaacccatT-CT-GT-T-GCAT-T-C--A--T-GCA--TGTA-AAC-T--CA--T----CCC----AAATG--C------A-G--GTA-T-----------A-T--TTTATG--------------TTCGG---TGG-AATTGATG-AATA-AG-AA-CATAaacagaaatcatatatattgatta
gi|11 : g--GGCG-AGC-T--GT--T----CCC----A--TA--C------A-CAAGTG-TT--GTGTT-TTA-T--TTCATAAA-TGA-TTTATG-TCCGT---TTG-AGTTTACG-AATT-AT-GA-CATAa
gi|15 : attttgtaaaagtgtaataaaaagccatactgcattgtct--GTG-TT--GTGCT-T-AAT--TTCATAAA-TGA-TTTATG-TCCGT---TTG-AGTTGACA-AATT-AG-GA-CATAata
4 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|6 ): TGAACAAAAAGACTATGATTTACTTTAAATTAAAAATTAGGGGAGGGGGGGGGGAGCTGGTTGCACTCCCATTAAATGCACAAAGTGTTACATGTTAATTGAAAACATTAGCTCAGTTTGTTTATATGCTGCATTTCTTATGCTTTCATCGCAGAATCATTGCCTTTCTATGTTTACAGTTTGAAGTTATACTTGTAGTATAGTTCCTTGGATGTTATCGTACAGCTAAGCTCCGCCCCCTAGAAGTTATGGTATGGTTGGAATTCTGCCAACCATTTTCTGTCTGATTTAAAGAAAGTAAAACATGCCATGTTACAACACAAT
Unaligned ( gi|9 ): TAAAATCGTAATAATCTCTGATATCATAAGTAAAAATAAATTCAAAAATCTTGTCATTTTATTTTTCTGACGGTTTGAAAAAATGACTGCTTAATTCTTTCTAATTTTATTATATACATGAGACCATACCTAGATTTGAAATTGTTTGGGGGGGGGAGGGGGGGGGGCTCTTAAATCCGTC
Unaligned ( gi|12 ): CCTTAAAAAAAGTTTGGAGGGGGGGAGGGGGAGGGATGTTACATCCCATAAAGAGCACAAAAATGGCATTTTAGTTGTAAAAAAAATATTAGCCA
Unaligned ( gi|16 ): ATTTTGTAAGATTGTGTAATAAAGAGCCTTGCTGCACTCTGTCCTGGTGAGC
Alignments
lowQualScore : 1 11 1 11 11 1 11 1 111 1 1 1 222222 11 1111 11 11 1111 11 222222 1 11 22222 1 11111 22 1 1111 222 1 11 11 22222 2222 1 11 11 1 1111 11 111111 2 444444444444 1 1111 22 222 222222222222222 1 111111 1111 111 111 111 11 11111 1111111 11 11111111111111
lowQualScore : 3 11 3 88 3 33 3 0 33 0 111 0 0 0 111111 11 7777 11 8 8 11 7777 0 11 0 333333 8 8 0 6 8 8 11 2 55555 0 88888 33 0 3333 777 0 33 11 8 00000 1111 0 22 0 33 33 0 7777 22 666666 1 3 0 1 888888888888 0 66 0 0 7777 8 11 888 000 3 333333333333333 3 99 6 444444 77 7777 0 6 6 0 222 111 111 4 4 11 5 444 4 55 33333 99 8 8 55 5555555 8888 11 66666666666666 3 66 4 4 4 55 0 8 0 4 8 0 777 4 0 4 4 4 4
lowQualScore : . .. . .. . .. . . .. . ... . . . ...... .. .... .. . . .. .... . .. . ...... . . . . . . .. . ..... . ..... .. . .... ... . .. .. . ..... .... . .. . .. .. . .... .. ...... . . . . ............ . .. . . .... . .. ... ... . ............... . .. . ...... .. .... . . . . ... ... ... . . .. . ... . .. ..... .. . . .. ....... .... .. .............. . .. . . . .. . . . . . . ... . . . . . .
lowQualScore : 3 33 3 33 2 88 2 0 88 0 000 0 0 0 888888 00 0000 00 0 0 00 0000 8 00 8 000000 0 0 8 0 0 0 00 0 00000 0 55555 88 0 5555 555 0 88 00 0 00000 2222 2 88 0 88 88 0 8888 00 000000 0 2 0 2 222222222222 0 55 8 8 0000 0 22 777 555 7 333333333333333 3 22 7 333333 99 3333 9 6 5 1 222 444 888 0 0 44 6 222 0 55 55555 55 0 0 55 4444444 5555 00 44444444444444 6 88 0 0 0 55 7 9 1 4 9 7 888 4 9 4 4 4 4
consensus : NNNNNNACTTGT-ATTAAGTGCGTCG-GCA--TAATAAATATA--TTTATAAAA-GTT--ACA-GAAAAC-A-CG-TG-TGTTTATTTA-TA--AA--CTGAAGTGGGCGTATCG--ACA----TCGATACGATCGAT--T-G-GT--TGTTAAA----TTTGTTCA--CAAGTGAATAGAAAT------C-T-GAATCCG-TGCTACG-C--ATGATTCAG-----GCA-CTTATAA--A--TTTGAATTTCGG--GT-TTATT-AAGT---ATTCGAA-GTTC--GCTGCTACA--TTGC-AACA-----GATT----ACTGCCCNC-CCC--CA--C-CCCACCCCT-C--AC-ATTGT--TT--TTATGTACATAT-ATATA---T-A-----TA-TATATAACAC----GTTTAGT-GATGTCGAN-TTAT-T-T--TGACTTTTTC-TCTTT---T----GTA-GAACG--AATAC-G--T---AGTGAAA--G--A-AACTTTGTNTATTTGTGAA-T-TGT-G-AA-TTAAAAT-CT-GT-TTGC-T-T-C--A--CG-CA--GGCG-AGC-T--CA--T----CCT----A--TA--C------A-T--GTG-TT-TGTGTT-T-A-T--TTTATAAA-TGA-TTTATG-TTCGG---TTGAA-CTGGTG-AATT-AG-AA-CATA
Reference ( family-6531 ) : NNNNNNACTTGT-ATTAAATGTGTCA-GCA--TAATAAATATA--TTTATAAAA-GTT--ACA-GAAAAC-A-CG-TG-TGTTTATTTA-TA--AA--CTGAAGTGGGCGTATCG--ACA----TCGATACGATCGAT--T-G-GT--TGTTAAA----TTTGTTCA--CAAGTGAATAGAAAT------C-T-GAAT-CG-TGCTACG-C--ATGATTCGG-----GCA-CTTATAA--A--TTTGAATTTCGG--GT-TTATT-AAGT---ATTCGAA-GTTC--GCTGCTACA--TTGC-AACA-----GATT----ACTGCCCCC-CCC--CA--C-CCCACCCCT-C--AC-GTTGT--TT--TTATATANATAT-ATAT----T-A-----TA-TATATAACAC----GTTTAGT-GATGTCGAG-TTAT-T-T--TGACTTTTTC-TCTTT---T----GTA-GAACG--AATAC-G--T---AGTGAAA--G--A-AATTTTGTNTATTTGTGAA-T-TGT-G-AA-TTAAAAT-CT-GT-TTGC-T-T-C--A--NG-CA--GGCG-AGC-T--CA--T----CCT----A--TA--C------A-T--GTG-TT-TGTGTT-T-A-T--TTTATAAA-TGA-TTTATG-TCCGG---TTGAA-CTGGTG-AATT-AG-AA-CATA
gi|1 : GAAA--G--A-AATTTTGTATATTTGTGAA-T-C----------AAAAT-CT-GT-T-GC-T-T-C--A--CG-CA--GGCG-AGC-T--AA--T----CCT----A--TA--C------A-C--GTG-TC-TGTGTT-T-A-T--TTTATAAA-TGA-TTTATG-TTCGG---TTGAA-CTGGTG-AATT-AG-AA-CATA
gi|10 : ACAC----GTTTAGT-GGTGCCGAT-TTAT-T-T---GACTTTCT------T---T----GTA-GAACG--GATAT-G--T---TGTGAAA--G---------TGTCGATAAA-GAC-A-TGT-G-AA-T--AAAT-GT-ATGTTGC-T-TTC--A--CG-CA--GGCG-AGC-T--CA--T----CCT----A--TA--CCTAAGTA-T--GTG--T-TGTGTT-T-A-T--TTTAacattattttaatatgcatggtactaggatgtaaaaagaaatgtgatcgagtaacggattggacataatgggattgagcacagtaagaatcgacaggggcggatcaagtggatgggaggagggggtcgtgaggtaggggatctgaaggccacttcaaggcccccagtgggtcttggtttgagcccccggaaactctttactatttttggtcatttttaatgacgagaacttgaggaaataacatcaataataaagtatctcaggctgtgtatcttagatactttattattggtgttattttctcaagttcaatctttcgaaaatgaaatacgagtaatctcaatactagtaaaagaaacaataaatcaaaagatctcgtccttgatttttctaagagtgggagattaatatccatcgctattttttatggacagacatgaacaaaaagaccatgattaaccttgaattgaaaattagggggggggttgggggtgcgcttcctttaaatccgccaagtgtgctaatctacatgtatatatgcgtgttaattgaaaacataagatatgcttaatttgtttatatggtatatttctagtgtttcattgctgaataaatgttacataactgttgcctttctatgattatggttggaatttatagtacggttcc
gi|11 : acacaaccacaaaacacTTTGTAAAAG-TGT---AA-TAAAAAG-CC-ATACTGC-A-T-T--G--T--CT--GGCG-AGC-T--GT--T----CCC----A--TA--C------A-CAAGTG-TT--GTGTT-TTA-T--TTCATAAA-TGA-TTTATG-TCCGT---TTGAG-TTTACG-AATT-AT-GA-CATA
gi|13 : atAAGTGGGCGTATCG--ACA----TCGATACGATCAAT--TTG-GT--TGTAAAA----TTTGTTCA--CAAGTGAATAGAAAT------C-T-GAATCCG-TGCTACG-C--Aata
gi|14 : T-CT-GT-T-GCAT-T-C--A--TG-CA--TGTA-AAC-T--CA--T----CCC----AAATG--C------A-G--GTA-T-----------------------A-T---TTTATG-TTCGG---TGGAA-TTGATG-AATA-AG-AA-CATA
gi|15 : g--GTG-TT--GTGCT-T-AAT--TTCATAAA-TGA-TTTATG-TCCGT---TTGAG-TTGACA-AATT-AG-GA-CATAa
gi|2 : AATAAATATAATCTTATAAAAAGTT--ACCCGAAAACCA-CGATGATGTCTATTTAATATCAA--TTGAAGTGGGCGTATCGCAACAGCAATCGATACGATCGATAAT-G-GTATTGTTAAAATTATTGATTCAACCAAG-GAATGAAAATAAGATACATAGAAT-CG-TGCTACGACTAAAGATTCAGAAAAAGCAACTTATAA--AAGCTAGAATATCAGAGGT-TTATTTAAGTGCAATTCGAAAGTTCAAGCTGCTACAAGTTGCCAACA-----GAAA----ATTATCAGA-CCCAACA--CGCCCACCACTAC--ACCATTGTAATA--TAATATAAA-AT-AAAT----TGA-----TA-TATA-AATACCGATATATAGTAGATGTCGAGCTTAT-AAT--GGACTTTTT--TCTTTATGTAAGAGTA-AAACG--AAAAC-GGAT---AGTGAAA--G--A-AATTTTGTATATT-------T-CGT-G-AA--TAAAAT-CTAGT-CTGC-T-T-C--AATAG-CAAGAGCGAAGCATTACA--TAAAACCC----A--TA---------A-T--ATG-TT-aca
gi|2 : AAT-AT-GT-TGGC-TGT-C--A--TGGCAA-GGAG-AGAAT--CAAAT----CCT----AAATA--C------AAT--GTGGTTATGTGTTAT-A-T--TTTATAAAATGA-TTTATGATTCGGAATTTGAAACTG-TG-AATT-AGAAA-CATAggctgtcatggcaaggagagaatcaaatcctaaatacaatgtggttatgtgttatattttataaaatgatttatgattcggaatttgaaactgtgaattagaaacataaacagaaatcatatatattgatta
gi|3 : aataaatataatcttataaaaagttacccgaaaaccacgatgatgtctatttaatatcaattgaagtgggcgtatcgcaacagcaatcgatacgatcgataatggtattgttaaaattattgattcaaccaaggaatgaaaataagatacatagaatcgtgctacgactaaagattcagaaaaagcaacttataaaagctagaatatcagaggtttatttaagtgcaattcgaaagttcaagctgctacaagttgccaacagaaaattatcagacccaacacgcccaccactacaccattgtaatataatataaaataaattgatatataaataccgatatatagtagatgtcgagcttataatggacttttttctttatgtaagagtaaaacgaaaacggatagtgaaagaaattttgtatatttcgtgaataaaatctagtctgcttcaatagcaagagcgaagcattacataaaacccatACTTGT-ATTAAATGTGTCA-GCA--TA-TAAATATA--T--ATAAAA-GTTTAACA-GAAAAC-AACG-TG-TGTTTATTTA-TA--AAAACTGAAGTGGGCGTATCG--A----------TACGATCGAT--T-GAGT--TGTTAAA----TTTGTTCA--CAAGTGAATAGAAAT------C-T-G-CT-CGATGCTACG-C--ATGATCAGG-----GCA-CTTATAAACA--TTTGAATTTCGGC-GTGTTA---AAGT---CTTCGAA-GTTC--GCTGCTACT--TTGC-AA-A-----GATT----ACTGCCTAC-ACC--CATTC-ACCAACCCT-C--AC-ATTGT--TTAATTGTATATATATAATATATCAT-A-----TA-TATATAAT-C----GTTTAGT-GATGTCGTT-TTAT-T-TGATCATTTTTTCATCTTT---T----GTATAAACG--AATAC-G--T---AGTGAAA--G--A-CACTTTGTTTTTTTGTGAATT-TGT-GAAA-TTAAAAT-CT-G--TTGC-A-T-C--A-----CA--GGCG-AGC-T--CA--T----CCT----A--TC--A------A-T--GTG-TT-TGTGTT-T-A-T--T-----GA-TGATTTTATG-TTTGG---TTGAC-CTGGTGAAATTAAG-AA-CATAaacagaaatcatatatattgatta
gi|4 : ataacatgcACTTGTTATCA----TGTCA-ACAGTTAAGAAATATA--TTTATAAAA-GTT--ACA-GAAAAC-A-CG-TG-TGTTTATTTA-TA--A---CTGAAGTGGG-GTATCG--ACA----TCGATACGATCGAT--T-G-GT--TGTTAGA----TTTGT-CA--CAGGTGAATAGAAAT------C-T-GAAT-CG-TGCTACG-C--ATGATTCAG-----GCA-CTTATAA--A--TTTGAATTTCGG--GT-TT-TT-AAGC---ATTCGAA-GTTC--GCTGCTACA--TTGC-AACA-----GATT----ACTGCCCCCTCCC--CA--C-CCCACCCCT-C--AC-ATTGT--TT--TTATGTACATGT-ACAT----T-A-----CAGTAT-TAACAC----GTTTAGT-GATGTCGA--TTAT-T-T--TGACTTTTTC-TCTTT---T----GTA-GAACG--AATAC-G--T---ACTGAAA--G--A-AACTTTGTTTATTTGTGAA-T-TGTTG-AA-TTAAAAT-CT-GT-TTGC-T-T-C--A--AG-CA--GGCG-AGC-T--CA--T----CCT----A--TA--C------A-T--GTG-TT-TGTGTT-T-A-T--TTTATAAA-TGA-TTTATGTTTCGG---TTGAA-CTGGTG-AATT-AG-AA-CATAatatcatatgtagttaatatcaaggtctacgatacagtaaaga
gi|5 : ataaaaTACA--TTGC-CGCAAAGGAGATTTTGTGCCCCCCCC-CCC--CA--C-CCCACCCCT-TCTAC-GTTGG--TT--ATATGTACATATTATATA---T-AATCACTA-TATATA-CAC----GTTTATG-GATGTCGAA-TTAT-T-T---AATTTTCTC-TTTGT---T----GTA-TAACG--A-TACTG--T---AGTGAGAAGG--ACAACTTTGTGTATTTGTGAA-T-TGT-G-AATTTAAAAT-CT-G--TTGC-T-T-CTGA--AG-CA--GGCGAAGC-T--CA-------CCT----A--TAAGC------ATT--GGG-TT-TGTGTT-T-A-T--TGTATGAA---G-TTTATG-TTC-G---T--AA-CTGGTG-GAAT-AG-AACCATA
gi|7 : TATAT-T--TGA--TTTTC-T---T---T----GTAAGAATGTCGATTC-G--CTACAGTACAA--GTCATAATTCTGT-TATT-GTTAA-TATGT-A-AA-TAATAATGCT-GA-TGCC-T-T-A--G--CA-CA--GGCA-A---C--CAGTT----CCTTATAA--TA--C------G-T--GT--TT-TGAAGT-T-A-TAATTTGTAAAATAA-TTTATG-TC-GT---TTTGA-CTGGTG-AATT-AG-GA-CATAtatcataagtagcgttaaatcacaaaggtctacagatacaataagaaa
gi|8 : tgctttaacgtgcaactaccccaccctccctcccttgatttttctgtgttcttaTTGA-ATTAAGTGCATGGTGTA--TGATATATATA--TTTATAAAA-GTT--ACA-GAAAAC-A-CG-TG-TGTTTATTTA-TA--AA--CTGAAGTGGGCGTATCG--ACA----TCGATACGATCGAT--T-G-GT--TGTTAAA----TTTGTTCA--CAGGTGAATAGAAAT------C-T-GAATCCG-TGCTACG-C--ATGATTCAG-----GTA-CTTATAA--A--TTTGAATTTCGG--GT-TTATT-AAGTC--ATTCTAA-GTTC--GCTGCTACA--TTGC-AACA-----TATagttgtttttat
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|6 ): TGAACAAAAAGACTATGATTTACTTTAAATTAAAAATTAGGGGAGGGGGGGGGGAGCTGGTTGCACTCCCATTAAATGCACAAAGTGTTACATGTTAATTGAAAACATTAGCTCAGTTTGTTTATATGCTGCATTTCTTATGCTTTCATCGCAGAATCATTGCCTTTCTATGTTTACAGTTTGAAGTTATACTTGTAGTATAGTTCCTTGGATGTTATCGTACAGCTAAGCTCCGCCCCCTAGAAGTTATGGTATGGTTGGAATTCTGCCAACCATTTTCTGTCTGATTTAAAGAAAGTAAAACATGCCATGTTACAACACAAT
Unaligned ( gi|9 ): TAAAATCGTAATAATCTCTGATATCATAAGTAAAAATAAATTCAAAAATCTTGTCATTTTATTTTTCTGACGGTTTGAAAAAATGACTGCTTAATTCTTTCTAATTTTATTATATACATGAGACCATACCTAGATTTGAAATTGTTTGGGGGGGGGAGGGGGGGGGGCTCTTAAATCCGTC
Unaligned ( gi|12 ): CCTTAAAAAAAGTTTGGAGGGGGGGAGGGGGAGGGATGTTACATCCCATAAAGAGCACAAAAATGGCATTTTAGTTGTAAAAAAAATATTAGCCA
Unaligned ( gi|16 ): ATTTTGTAAGATTGTGTAATAAAGAGCCTTGCTGCACTCTGTCCTGGTGAGC
Alignments
lowQualScore : 1 11 11 11 11 1 11 1 111 1 1 1 222222 11 1111 11 11 1111 11 222222 1 11 22222 1 22 22 1 1111 222 1 11 11 22222 2222 1 11 11 1 1111 1 111111 333333333333333333 1 11 222 222222222222222 1 111111 1111 111 11 1111111 11111111111
lowQualScore : 3 11 0 44 88 3 33 3 0 33 0 111 0 0 0 111111 11 7777 11 8 8 11 7777 0 11 0 333333 8 8 0 5 8 11 55555 0 77 33 0 3333 777 0 33 11 8 00000 1111 0 11 0 33 33 0 7777 0 666666 0 3 555555555555555555 0 3 5 88 8 66 888 000 3 333333333333333 3 99 6 444444 77 7777 0 6 8 1 666 777 222 4 4 99 7 4 4 4 66 666 4 4 4 22 2222222 66 66666666666 4 77 4 4 4 55 0 8 0 4 8 777 4 0 4 4 4 4
lowQualScore : . .. . .. .. . .. . . .. . ... . . . ...... .. .... .. . . .. .... . .. . ...... . . . . . .. ..... . .. .. . .... ... . .. .. . ..... .... . .. . .. .. . .... . ...... . . .................. . . . .. . .. ... ... . ............... . .. . ...... .. .... . . . . ... ... ... . . .. . . . . .. ... . . . .. ....... .. ........... . .. . . . .. . . . . . ... . . . . . .
lowQualScore : 3 00 7 00 33 2 88 2 0 88 0 000 0 0 0 888888 00 0000 00 0 0 00 0000 8 00 8 000000 0 0 8 0 0 00 00000 0 55 88 0 5555 555 0 88 00 0 00000 2222 2 22 0 88 88 0 8888 0 000000 2 2 888888888888888888 0 2 6 88 0 88 777 555 7 333333333333333 3 22 7 333333 99 3333 4 6 7 4 111 333 333 4 4 22 2 4 4 4 11 666 4 4 4 22 7777777 11 88888888888 0 22 0 0 0 55 7 9 1 4 9 888 4 9 4 4 4 4
consensus : NNNNNNACTTGT-ATTAAGTGCGTCG-GCA--TAATAAATATA--TTTATAAAA-GTT--ACA-GAAAAC-A-CG-TG-TGTTTATTTA-TA--AA--CTGAAGTGGGCGTATCG--ACA----TCGATACGATCGAT--T-G-GT--TGTTAAA----TTTGTTCA--CAAGTGAATAGAAAT------C-T-GAATCCGTGCTACG-C--ATGATTCAG-----GCA-CTTATAAA-GTTTGAATTTCGG--GT-TTATT-AAGT---ATTCGAA-GTTC--GCTGCTACA--TTGC-AACA-----GATT----ACTGCCCNC-CCC--CA--C-CCCACCCCT-C--AC-ATTGT--TT--TTATGTACATAT-A---TATC-ATA-----TA-TATATAAC-ACGTTTAGT-GATGTCGAN-TTAT-T-T--TGACTTTTTC-TCTTT---T----GTA-GAACG--AATAC-G--T---AGTGAAA--G--A-AACTTTGTNTATTTGTGAA-T-CGT-G-AA-TTAAAAT-CT-GT-TTGC-T-T-C--ACG-CA-GGCG-AGC-TCA--TCCT----A--TA--C------A-T--GTG-TT-TGTGTT-T-A-T--TTTATAAA-TGA-TTTATG-TTCGG---TTGAA-CTGGTG-AATT-AG-AA-CATA
Reference ( family-6531 ) : NNNNNNACTTGT-ATTAAGTGCGTCG-GCA--TAATAAATATA--TTTATAAAA-GTT--ACA-GAAAAC-A-CG-TG-TGTTTATTTA-TA--AA--CTGAAGTGGGCGTATCG--ACA----TCGATACGATCGAT--T-G-GT--TGTTAAA----TTTGTTCA--CAAGTGAATAGAAAT------C-T-GAATCCGTGCTACG-C--ATGATTCAG-----GCA-CTTATAAA--TTTGAATTTCGG--GT-TTATT-AAGT---ATTCGAA-GTTC--GCTGCTACA--TTGC-AACA-----GATT----ACTGCCCNC-CCC--CA--C-CCCACCCCT-C--AC-ATTGT--TT--TTATGTACATAT-A---TAT--ATA-----TA-TATATAAC-ACGTTTAGT-GATGTCGAN-TTAT-T-T--TGACTTTTTC-TCTTT---T----GTA-GAACG--AATAC-G--T---AGTGAAA--G--A-AACTTTGTNTATTTGTGAA-T-TGT-G-AA-TTAAAAT-CT-GT-TTGC-T-T-C--ACG-CA-GGCG-AGC-TCA--TCCT----A--TA--C------A-T--GTG-TT-TGTGTT-T-A-T--TTTATAAA-TGA-TTTATG-TTCGG---TTGAA-CTGGTG-AATT-AG-AA-CATA
gi|1 : GAAA--G--A-AATTTTGTATATTTGTGAA-T-C----------AAAAT-CT-GT-T-GC-T-T-C--ACG-CA-GGCG-AGC-TAA--TCCT----A--TA--C------A-C--GTG-TC-TGTGTT-T-A-T--TTTATAAA-TGA-TTTATG-TTCGG---TTGAA-CTGGTG-AATT-AG-AA-CATA
gi|10 : AC-ACGTTTAGT-GGTGCCGAT-TTAT-T-T---GACTTTCT------T---T----GTA-GAACG--GATAT-G--T---TGTGAAA--G---------TGTCGATAAA-GAC-A-TGT-G-AA-T--AAAT-GT-ATGTTGC-T-TTC--ACG-CA-GGCG-AGC-TCA--TCCT----A--TA--CCTAAGTA-T--GTG--T-TGTGTT-T-A-T--TTTAacattattttaatatgcatggtactaggatgtaaaaagaaatgtgatcgagtaacggattggacataatgggattgagcacagtaagaatcgacaggggcggatcaagtggatgggaggagggggtcgtgaggtaggggatctgaaggccacttcaaggcccccagtgggtcttggtttgagcccccggaaactctttactatttttggtcatttttaatgacgagaacttgaggaaataacatcaataataaagtatctcaggctgtgtatcttagatactttattattggtgttattttctcaagttcaatctttcgaaaatgaaatacgagtaatctcaatactagtaaaagaaacaataaatcaaaagatctcgtccttgatttttctaagagtgggagattaatatccatcgctattttttatggacagacatgaacaaaaagaccatgattaaccttgaattgaaaattagggggggggttgggggtgcgcttcctttaaatccgccaagtgtgctaatctacatgtatatatgcgtgttaattgaaaacataagatatgcttaatttgtttatatggtatatttctagtgtttcattgctgaataaatgttacataactgttgcctttctatgattatggttggaatttatagtacggttcc
gi|11 : acacaaccacaaaacac-GGCG-AGC-TGT--TCCC----A--TA--C------A-CAAGTG-TT--GTGTT-TTA-T--TTCATAAA-TGA-TTTATG-TCCGT---TTGAG-TTTACG-AATT-AT-GA-CATA
gi|13 : attttgtaaaagtgtaataaaaagccatactgcattgtctAAGTGGGCGTATCG--ACA----TCGATACGATCAAT--TTG-GT--TGTAAAA----TTTGTTCA--CAAGTGAATAGAAAT------C-T-GAATCCGTGCTACG-C--Aata
gi|14 : T-CT-GT-T-GCAT-T-C--ATG-CA-TGTA-AAC-TCA--TCCC----AAATG--C------A-G--GTA-T-----------------------A-T---TTTATG-TTCGG---TGGAA-TTGATG-AATA-AG-AA-CATA
gi|15 : g--GTG-TT--GTGCT-T-AAT--TTCATAAA-TGA-TTTATG-TCCGT---TTGAG-TTGACA-AATT-AG-GA-CATAa
gi|2 : AATAAATATAATCTTATAAAAAGTT--ACCCGAAAACCA-CGATGATGTCTATTTAATATCAA--TTGAAGTGGGCGTATCGCAACAGCAATCGATACGATCGATAAT-G-GTATTGTTAAAATTATTGATTCAACCAAG-GAATGAAAATAAGATACATAGAATC-GTGCTACGACTAAAGATTCAGAAAAAGCAACTTATAAAAGCTAGAATATCAGAGGT-TTATTTAAGTGCAATTCGAAAGTTCAAGCTGCTACAAGTTGCCAACA-----GAAA----ATTATCAGA-CCCAACA--CGCCCACCACTAC--ACCATTGTAATA--TAATATAAA-AT-A---AATTGATA-----TA-TAAATACCGATATATAGTAGATGTCGAGCTTAT-AAT--GGACTTTTT--TCTTTATGTAAGAGTA-AAACG--AAAAC-GGAT---AGTGAAA--G--A-AATTTTGTATATT-------T-CGT-G-AA--TAAAAT-CTAGT-CTGC-T-T-C--Aaca
gi|2 : AAT-AT-GT-TGGC-TGT-C--ATGGCAAGGAG-AGAATCAAATCCT----AAATA--C------AAT--GTGGTTATGTGTTAT-A-T--TTTATAAAATGA-TTTATGATTCGGAATTTGAAACTG-TG-AATT-AGAAA-CATAatagcaagagcgaagcattacataaaacccataatatgttggctgtcatggcaaggagagaatcaaatcctaaatacaatgtggttatgtgttatattttataaaatgatttatgattcggaatttgaaactgtgaattagaaacataaacagaaatcatatatattgatta
gi|3 : aataaatataatcttataaaaagttacccgaaaaccacgatgatgtctatttaatatcaattgaagtgggcgtatcgcaacagcaatcgatacgatcgataatggtattgttaaaattattgattcaaccaaggaatgaaaataagatacatagaatcgtgctacgactaaagattcagaaaaagcaacttataaaagctagaatatcagaggtttatttaagtgcaattcgaaagttcaagctgctacaagttgccaacagaaaattatcagacccaacacgcccaccactacaccattgtaatataatataaaataaattgatatataaataccgatatatagtagatgtcgagcttataatggacttttttctttatgtaagagtaaaacgaaaacggatagtgaaagaaattttgtatatttcgtgaataaaatctagtctgcttcaatagcaagagcgaagcattacataaaacccatACTTGT-ATTAAATGTGTCA-GCA--TA-TAAATATA--T--ATAAAA-GTTTAACA-GAAAAC-AACG-TG-TGTTTATTTA-TA--AAAACTGAAGTGGGCGTATCG--A----------TACGATCGAT--T-GAGT--TGTTAAA----TTTGTTCA--CAAGTGAATAGAAAT------C-T-GC-TCGATGCTACG-C--ATGATCAGG-----GCA-CTTATAAACATTTGAATTTCGGC-GTGTTA---AAGT---CTTCGAA-GTTC--GCTGCTACT--TTGC-AA-A-----GATT----ACTGCCTAC-ACC--CATTC-ACCAACCCT-C--AC-ATTGT--TTAATTGTATATATAT-AATATATC-ATA-----TA-TATATAAT--CGTTTAGT-GATGTCGTT-TTAT-T-TGATCATTTTTTCATCTTT---T----GTATAAACG--AATAC-G--T---AGTGAAA--G--A-CACTTTGTTTTTTTGTGAATT-TGT-GAAA-TTAAAAT-CT-G--TTGC-A-T-C--A---CA-GGCG-AGC-TCA--TCCT----A--TC--A------A-T--GTG-TT-TGTGTT-T-A-T--T-----GA-TGATTTTATG-TTTGG---TTGAC-CTGGTGAAATTAAG-AA-CATAaacagaaatcatatatattgatta
gi|4 : ataacatgcACTTGTTATCA----TGTCA-ACAGTTAAGAAATATA--TTTATAAAA-GTT--ACA-GAAAAC-A-CG-TG-TGTTTATTTA-TA--A---CTGAAGTGGG-GTATCG--ACA----TCGATACGATCGAT--T-G-GT--TGTTAGA----TTTGT-CA--CAGGTGAATAGAAAT------C-T-GAATC-GTGCTACG-C--ATGATTCAG-----GCA-CTTATAAA--TTTGAATTTCGG--GT-TT-TT-AAGC---ATTCGAA-GTTC--GCTGCTACA--TTGC-AACA-----GATT----ACTGCCCCCTCCC--CA--C-CCCACCCCT-C--AC-ATTGT--TT--TTATGTACATGT-A---CAT---TA-----CAGTAT-TAAC-ACGTTTAGT-GATGTCGA--TTAT-T-T--TGACTTTTTC-TCTTT---T----GTA-GAACG--AATAC-G--T---ACTGAAA--G--A-AACTTTGTTTATTTGTGAA-T-TGTTG-AA-TTAAAAT-CT-GT-TTGC-T-T-C--AAG-CA-GGCG-AGC-TCA--TCCT----A--TA--C------A-T--GTG-TT-TGTGTT-T-A-T--TTTATAAA-TGA-TTTATGTTTCGG---TTGAA-CTGGTG-AATT-AG-AA-CATAatatcatatgtagttaatatcaaggtctacgatacagtaaaga
gi|5 : ataaaaTACA--TTGC-CGCAAAGGAGATTTTGTGCCCCCCCC-CCC--CA--C-CCCACCCCT-TCTAC-GTTGG--TT--ATATGTACATATTA---TAT--ATAATCACTA-TATATA-C-ACGTTTATG-GATGTCGAA-TTAT-T-T---AATTTTCTC-TTTGT---T----GTA-TAACG--A-TACTG--T---AGTGAGAAGG--ACAACTTTGTGTATTTGTGAA-T-TGT-G-AATTTAAAAT-CT-G--TTGC-T-T-CTGAAG-CA-GGCGAAGC-TCA---CCT----A--TAAGC------ATT--GGG-TT-TGTGTT-T-A-T--TGTATGAA---G-TTTATG-TTC-G---T--AA-CTGGTG-GAAT-AG-AACCATA
gi|7 : TATAT-T--TGA--TTTTC-T---T---T----GTAAGAATGTCGATTC-G--CTACAGTACAA--GTCATAATTCTGT-TATT-GTTAA-TATGT-A-AA-TAATAATGCT-GA-TGCC-T-T-A--GCA-CA-GGCA-A---CCAGTTCCTTATAA--TA--C------G-T--GT--TT-TGAAGT-T-A-TAATTTGTAAAATAA-TTTATG-T-CGT---TTTGA-CTGGTG-AATT-AG-GA-CATAtatcataagtagcgttaaatcacaaaggtctacagatacaataagaaa
gi|8 : tgctttaacgtgcaactaccccaccctccctcccttgatttttctgtgttcttaTTGA-ATTAAGTGCATGGTGTA--TGATATATATA--TTTATAAAA-GTT--ACA-GAAAAC-A-CG-TG-TGTTTATTTA-TA--AA--CTGAAGTGGGCGTATCG--ACA----TCGATACGATCGAT--T-G-GT--TGTTAAA----TTTGTTCA--CAGGTGAATAGAAAT------C-T-GAATCCGTGCTACG-C--ATGATTCAG-----GTA-CTTATAAA--TTTGAATTTCGG--GT-TTATT-AAGTC--ATTCTAA-GTTC--GCTGCTACA--TTGC-AACA-----TATagttgtttttat
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|6 ): TGAACAAAAAGACTATGATTTACTTTAAATTAAAAATTAGGGGAGGGGGGGGGGAGCTGGTTGCACTCCCATTAAATGCACAAAGTGTTACATGTTAATTGAAAACATTAGCTCAGTTTGTTTATATGCTGCATTTCTTATGCTTTCATCGCAGAATCATTGCCTTTCTATGTTTACAGTTTGAAGTTATACTTGTAGTATAGTTCCTTGGATGTTATCGTACAGCTAAGCTCCGCCCCCTAGAAGTTATGGTATGGTTGGAATTCTGCCAACCATTTTCTGTCTGATTTAAAGAAAGTAAAACATGCCATGTTACAACACAAT
Unaligned ( gi|9 ): TAAAATCGTAATAATCTCTGATATCATAAGTAAAAATAAATTCAAAAATCTTGTCATTTTATTTTTCTGACGGTTTGAAAAAATGACTGCTTAATTCTTTCTAATTTTATTATATACATGAGACCATACCTAGATTTGAAATTGTTTGGGGGGGGGAGGGGGGGGGGCTCTTAAATCCGTC
Unaligned ( gi|12 ): CCTTAAAAAAAGTTTGGAGGGGGGGAGGGGGAGGGATGTTACATCCCATAAAGAGCACAAAAATGGCATTTTAGTTGTAAAAAAAATATTAGCCA
Unaligned ( gi|16 ): ATTTTGTAAGATTGTGTAATAAAGAGCCTTGCTGCACTCTGTCCTGGTGAGC
Alignments
lowQualScore : 1 11 11 11 11 1 11 1 111 1 1 1 222222 11 1111 11 11 1111 11 222222 1 11 22222 1 33 22 1 1111 222 1 11 11 22222 2222 1 11 11 1 1111 1 111111 2222 1 22 222222 11 222 222222222222222 1 111111 1111 11 111 11 1111111 11111111111
lowQualScore : 3 11 0 44 88 3 33 3 0 33 0 111 0 0 0 111111 11 7777 11 8 8 11 7777 0 11 0 333333 8 8 0 5 8 11 55555 0 99 33 0 3333 777 0 33 11 8 00000 1111 0 11 0 33 33 0 7777 0 666666 0 0000 0 1 00 888888 3 5 88 8 66 888 000 3 333333333333333 3 99 6 444444 77 7777 0 6 8 1 555 22 777 222 4 4 99 7 4 4 4 66 666 4 4 4 22 2222222 66 66666666666 4 77 4 4 4 55 0 8 0 4 8 777 4 0 4 4 4 4
lowQualScore : . .. . .. .. . .. . . .. . ... . . . ...... .. .... .. . . .. .... . .. . ...... . . . . . .. ..... . .. .. . .... ... . .. .. . ..... .... . .. . .. .. . .... . ...... . .... . . .. ...... . . .. . .. ... ... . ............... . .. . ...... .. .... . . . . ... .. ... ... . . .. . . . . .. ... . . . .. ....... .. ........... . .. . . . .. . . . . . ... . . . . . .
lowQualScore : 3 00 7 00 33 2 88 2 0 88 0 000 0 0 0 888888 00 0000 00 0 0 00 0000 8 00 8 000000 0 0 8 0 0 00 00000 0 00 88 0 5555 555 0 88 00 0 00000 2222 2 22 0 88 88 0 8888 0 000000 2 8888 0 2 55 222222 2 6 88 0 88 777 555 7 333333333333333 3 22 7 333333 99 3333 4 6 7 4 999 00 333 333 4 4 22 2 4 4 4 11 666 4 4 4 22 7777777 11 88888888888 0 22 0 0 0 55 7 9 1 4 9 888 4 9 4 4 4 4
consensus : NNNNNNACTTGT-ATTAAGTGCGTCG-GCA--TAATAAATATA--TTTATAAAA-GTT--ACA-GAAAAC-A-CG-TG-TGTTTATTTA-TA--AA--CTGAAGTGGGCGTATCG--ACA----TCGATACGATCGAT--T-G-GT--TGTTAAA----TTTGTTCA--CAAGTGAATAGAAAT------C-T-GAATCCGTGCTACG-C--ATGATTCAG-----GCA-CTTATAAA-GTTTGAATTTCGG--GT-TTATT-AAGT---ATTCGAA-GTTC--GCTGCTACA--TTGC-AACA-----GATT----ACTGCCCNC-CCC--CA--C-CCCACCCCT-C--AC-ATTGT--TT--TTATGTACAT---AT-ATATT-ATA-----TATATATAAC-ACGTTTAGT-GATGTCGAN-TTAT-T-T--TGACTTTTTC-TCTTT---T----GTA-GAACG--AATAC-G--T---AGTGAAA--G--A-AACTTTGTNTATTTGTGA-A-T-CGT-G-AA-TTAAAAT-CT-GT-TTGC-T-T-C--ACG-CA-GGCG-AGC-TCA--TCCT----A--TA--C------A-T--GTG-TT-TGTGTT-T-A-T--TTTATAAA-TGA-TTTATG-TTCGG---TTGAA-CTGGTG-AATT-AG-AA-CATA
Reference ( family-6531 ) : NNNNNNACTTGT-ATTAAGTGCGTCG-GCA--TAATAAATATA--TTTATAAAA-GTT--ACA-GAAAAC-A-CG-TG-TGTTTATTTA-TA--AA--CTGAAGTGGGCGTATCG--ACA----TCGATACGATCGAT--T-G-GT--TGTTAAA----TTTGTTCA--CAAGTGAATAGAAAT------C-T-GAATCCGTGCTACG-C--ATGATTCAG-----GCA-CTTATAAA-GTTTGAATTTCGG--GT-TTATT-AAGT---ATTCGAA-GTTC--GCTGCTACA--TTGC-AACA-----GATT----ACTGCCCNC-CCC--CA--C-CCCACCCCT-C--AC-ATTGT--TT--TTATGTACAT---AT-ATATC-ATA-----TATATATAAC-ACGTTTAGT-GATGTCGAN-TTAT-T-T--TGACTTTTTC-TCTTT---T----GTA-GAACG--AATAC-G--T---AGTGAAA--G--A-AACTTTGTNTATTTGTGA-A-T-CGT-G-AA-TTAAAAT-CT-GT-TTGC-T-T-C--ACG-CA-GGCG-AGC-TCA--TCCT----A--TA--C------A-T--GTG-TT-TGTGTT-T-A-T--TTTATAAA-TGA-TTTATG-TTCGG---TTGAA-CTGGTG-AATT-AG-AA-CATA
gi|1 : GAAA--G--A-AATTTTGTATATTTGTGA-A-T-C----------AAAAT-CT-GT-T-GC-T-T-C--ACG-CA-GGCG-AGC-TAA--TCCT----A--TA--C------A-C--GTG-TC-TGTGTT-T-A-T--TTTATAAA-TGA-TTTATG-TTCGG---TTGAA-CTGGTG-AATT-AG-AA-CATA
gi|10 : AC-ACGTTTAGT-GGTGCCGAT-TTAT-T-T---GACTTTCT------T---T----GTA-GAACG--GATAT-G--T---TGTGAAA--G---------TGTCGATAAA-GACA-T--GT-G-AA-T--AAAT-GT-ATGTTGC-T-TTC--ACG-CA-GGCG-AGC-TCA--TCCT----A--TA--CCTAAGTA-T--GTG--T-TGTGTT-T-A-T--TTTAacattattttaatatgcatggtactaggatgtaaaaagaaatgtgatcgagtaacggattggacataatgggattgagcacagtaagaatcgacaggggcggatcaagtggatgggaggagggggtcgtgaggtaggggatctgaaggccacttcaaggcccccagtgggtcttggtttgagcccccggaaactctttactatttttggtcatttttaatgacgagaacttgaggaaataacatcaataataaagtatctcaggctgtgtatcttagatactttattattggtgttattttctcaagttcaatctttcgaaaatgaaatacgagtaatctcaatactagtaaaagaaacaataaatcaaaagatctcgtccttgatttttctaagagtgggagattaatatccatcgctattttttatggacagacatgaacaaaaagaccatgattaaccttgaattgaaaattagggggggggttgggggtgcgcttcctttaaatccgccaagtgtgctaatctacatgtatatatgcgtgttaattgaaaacataagatatgcttaatttgtttatatggtatatttctagtgtttcattgctgaataaatgttacataactgttgcctttctatgattatggttggaatttatagtacggttcc
gi|11 : acacaaccacaaaacac-GGCG-AGC-TGT--TCCC----A--TA--C------A-CAAGTG-TT--GTGTT-TTA-T--TTCATAAA-TGA-TTTATG-TCCGT---TTGAG-TTTACG-AATT-AT-GA-CATA
gi|13 : attttgtaaaagtgtaataaaaagccatactgcattgtctAAGTGGGCGTATCG--ACA----TCGATACGATCAAT--TTG-GT--TGTAAAA----TTTGTTCA--CAAGTGAATAGAAAT------C-T-GAATCCGTGCTACG-C--Aata
gi|14 : T-CT-GT-T-GCAT-T-C--ATG-CA-TGTA-AAC-TCA--TCCC----AAATG--C------A-G--GTA-T-----------------------A-T---TTTATG-TTCGG---TGGAA-TTGATG-AATA-AG-AA-CATA
gi|15 : g--GTG-TT--GTGCT-T-AAT--TTCATAAA-TGA-TTTATG-TCCGT---TTGAG-TTGACA-AATT-AG-GA-CATAa
gi|2 : AATAAATATAATCTTATAAAAAGTT--ACCCGAAAACCA-CGATGATGTCTATTTAATATCAA--TTGAAGTGGGCGTATCGCAACAGCAATCGATACGATCGATAAT-G-GTATTGTTAAAATTATTGATTCAACCAAG-GAATGAAAATAAGATACATAGAATC-GTGCTACGACTAAAGATTCAGAAAAAGCAACTTATAAAAGCTAGAATATCAGAGGT-TTATTTAAGTGCAATTCGAAAGTTCAAGCTGCTACAAGTTGCCAACA-----GAAA----ATTATCAGA-CCCAACA--CGCCCACCACTAC--ACCATTGTAATA--TAATATAAA----AT-AAATTGATA-----TATAAATACCGATATATAGTAGATGTCGAGCTTAT-AAT--GGACTTTTT--TCTTTATGTAAGAGTA-AAACG--AAAAC-GGAT---AGTGAAA--G--A-AATTTTGTATATT--------T-CGT-G-AA--TAAAAT-CTAGT-CTGC-T-T-C--Aaca
gi|2 : AAT-AT-GT-TGGC-TGT-C--ATGGCAAGGAG-AGAATCAAATCCT----AAATA--C------AAT--GTGGTTATGTGTTAT-A-T--TTTATAAAATGA-TTTATGATTCGGAATTTGAAACTG-TG-AATT-AGAAA-CATAatagcaagagcgaagcattacataaaacccataatatgttggctgtcatggcaaggagagaatcaaatcctaaatacaatgtggttatgtgttatattttataaaatgatttatgattcggaatttgaaactgtgaattagaaacataaacagaaatcatatatattgatta
gi|3 : aataaatataatcttataaaaagttacccgaaaaccacgatgatgtctatttaatatcaattgaagtgggcgtatcgcaacagcaatcgatacgatcgataatggtattgttaaaattattgattcaaccaaggaatgaaaataagatacatagaatcgtgctacgactaaagattcagaaaaagcaacttataaaagctagaatatcagaggtttatttaagtgcaattcgaaagttcaagctgctacaagttgccaacagaaaattatcagacccaacacgcccaccactacaccattgtaatataatataaaataaattgatatataaataccgatatatagtagatgtcgagcttataatggacttttttctttatgtaagagtaaaacgaaaacggatagtgaaagaaattttgtatatttcgtgaataaaatctagtctgcttcaatagcaagagcgaagcattacataaaacccatACTTGT-ATTAAATGTGTCA-GCA--TA-TAAATATA--T--ATAAAA-GTTTAACA-GAAAAC-AACG-TG-TGTTTATTTA-TA--AAAACTGAAGTGGGCGTATCG--A----------TACGATCGAT--T-GAGT--TGTTAAA----TTTGTTCA--CAAGTGAATAGAAAT------C-T-G-CTCGATGCTACG-C--ATGATCAGG-----GCA-CTTATAAACATTTGAATTTCGGC-GTGTTA---AAGT---CTTCGAA-GTTC--GCTGCTACT--TTGC-AA-A-----GATT----ACTGCCTAC-ACC--CATTC-ACCAACCCT-C--AC-ATTGT--TTAATTGTATATATATAAT-ATATC-ATA-----TATATATAAT--CGTTTAGT-GATGTCGTT-TTAT-T-TGATCATTTTTTCATCTTT---T----GTATAAACG--AATAC-G--T---AGTGAAA--G--A-CACTTTGTTTTTTTGTGA-ATT-TGT-GAAA-TTAAAAT-CT-G--TTGC-A-T-C--A---CA-GGCG-AGC-TCA--TCCT----A--TC--A------A-T--GTG-TT-TGTGTT-T-A-T--T-----GA-TGATTTTATG-TTTGG---TTGAC-CTGGTGAAATTAAG-AA-CATAaacagaaatcatatatattgatta
gi|4 : ataacatgcACTTGTTATCA----TGTCA-ACAGTTAAGAAATATA--TTTATAAAA-GTT--ACA-GAAAAC-A-CG-TG-TGTTTATTTA-TA--A---CTGAAGTGGG-GTATCG--ACA----TCGATACGATCGAT--T-G-GT--TGTTAGA----TTTGT-CA--CAGGTGAATAGAAAT------C-T-GAATC-GTGCTACG-C--ATGATTCAG-----GCA-CTTATAAA--TTTGAATTTCGG--GT-TT-TT-AAGC---ATTCGAA-GTTC--GCTGCTACA--TTGC-AACA-----GATT----ACTGCCCCCTCCC--CA--C-CCCACCCCT-C--AC-ATTGT--TT--TTATGTACAT---GT-ACATT-ACA------GTAT-TAAC-ACGTTTAGT-GATGTCGA--TTAT-T-T--TGACTTTTTC-TCTTT---T----GTA-GAACG--AATAC-G--T---ACTGAAA--G--A-AACTTTGTTTATTTGTGA-A-T-TGTTG-AA-TTAAAAT-CT-GT-TTGC-T-T-C--AAG-CA-GGCG-AGC-TCA--TCCT----A--TA--C------A-T--GTG-TT-TGTGTT-T-A-T--TTTATAAA-TGA-TTTATGTTTCGG---TTGAA-CTGGTG-AATT-AG-AA-CATAatatcatatgtagttaatatcaaggtctacgatacagtaaaga
gi|5 : ataaaaTACA--TTGC-CGCAAAGGAGATTTTGTGCCCCCCCC-CCC--CA--C-CCCACCCCT-TCTAC-GTTGG--TT--ATATGTACAT---ATTATAT--ATAATCACTATATATA-C-ACGTTTATG-GATGTCGAA-TTAT-T-T---AATTTTCTC-TTTGT---T----GTA-TAACG--A-TACTG--T---AGTGAGAAGG--ACAACTTTGTGTATTTGTGA-A-T-TGT-G-AATTTAAAAT-CT-G--TTGC-T-T-CTGAAG-CA-GGCGAAGC-TCA---CCT----A--TAAGC------ATT--GGG-TT-TGTGTT-T-A-T--TGTATGAA---G-TTTATG-TTC-G---T--AA-CTGGTG-GAAT-AG-AACCATA
gi|7 : TATAT-T--TGA--TTTTC-T---T---T----GTAAGAATGTCGATTC-G--CTACAGTACAA--GTCATAATTCTGT-TATT-GTTA-A-TATGT-A-AA-TAATAATGCT-GA-TGCC-T-T-A--GCA-CA-GGCA-A---CCAGTTCCTTATAA--TA--C------G-T--GT--TT-TGAAGT-T-A-TAATTTGTAAAATAA-TTTATG-T-CGT---TTTGA-CTGGTG-AATT-AG-GA-CATAtatcataagtagcgttaaatcacaaaggtctacagatacaataagaaa
gi|8 : tgctttaacgtgcaactaccccaccctccctcccttgatttttctgtgttcttaTTGA-ATTAAGTGCATGGTGTA--TGATATATATA--TTTATAAAA-GTT--ACA-GAAAAC-A-CG-TG-TGTTTATTTA-TA--AA--CTGAAGTGGGCGTATCG--ACA----TCGATACGATCGAT--T-G-GT--TGTTAAA----TTTGTTCA--CAGGTGAATAGAAAT------C-T-GAATCCGTGCTACG-C--ATGATTCAG-----GTA-CTTATAAA--TTTGAATTTCGG--GT-TTATT-AAGTC--ATTCTAA-GTTC--GCTGCTACA--TTGC-AACA-----TATagttgtttttat
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|6 ): TGAACAAAAAGACTATGATTTACTTTAAATTAAAAATTAGGGGAGGGGGGGGGGAGCTGGTTGCACTCCCATTAAATGCACAAAGTGTTACATGTTAATTGAAAACATTAGCTCAGTTTGTTTATATGCTGCATTTCTTATGCTTTCATCGCAGAATCATTGCCTTTCTATGTTTACAGTTTGAAGTTATACTTGTAGTATAGTTCCTTGGATGTTATCGTACAGCTAAGCTCCGCCCCCTAGAAGTTATGGTATGGTTGGAATTCTGCCAACCATTTTCTGTCTGATTTAAAGAAAGTAAAACATGCCATGTTACAACACAAT
Unaligned ( gi|9 ): TAAAATCGTAATAATCTCTGATATCATAAGTAAAAATAAATTCAAAAATCTTGTCATTTTATTTTTCTGACGGTTTGAAAAAATGACTGCTTAATTCTTTCTAATTTTATTATATACATGAGACCATACCTAGATTTGAAATTGTTTGGGGGGGGGAGGGGGGGGGGCTCTTAAATCCGTC
Unaligned ( gi|12 ): CCTTAAAAAAAGTTTGGAGGGGGGGAGGGGGAGGGATGTTACATCCCATAAAGAGCACAAAAATGGCATTTTAGTTGTAAAAAAAATATTAGCCA
Unaligned ( gi|16 ): ATTTTGTAAGATTGTGTAATAAAGAGCCTTGCTGCACTCTGTCCTGGTGAGC
Alignments
lowQualScore : 1 11 11 11 11 1 11 1 111 1 1 1 222222 11 1111 11 11 1111 11 222222 1 11 22222 1 33 22 1 1111 222 1 11 11 22222 2222 1 11 11 1 1111 1 111111 2222 1 11 222222 11 222 222222222222222 1 111111 1111 11 111 11 1111111 11111111111
lowQualScore : 3 11 0 44 88 3 33 3 0 33 0 111 0 0 0 111111 11 7777 11 8 8 11 7777 0 11 0 333333 8 8 0 5 8 11 55555 0 99 33 0 3333 777 0 33 11 8 00000 1111 0 11 0 33 33 0 7777 0 666666 0 0000 0 1 77 888888 3 5 88 8 66 888 000 3 333333333333333 3 99 6 444444 77 7777 0 6 8 1 555 22 777 222 4 4 99 7 4 4 4 66 666 4 4 4 22 2222222 66 66666666666 4 77 4 4 4 55 0 8 0 4 8 777 4 0 4 4 4 4
lowQualScore : . .. . .. .. . .. . . .. . ... . . . ...... .. .... .. . . .. .... . .. . ...... . . . . . .. ..... . .. .. . .... ... . .. .. . ..... .... . .. . .. .. . .... . ...... . .... . . .. ...... . . .. . .. ... ... . ............... . .. . ...... .. .... . . . . ... .. ... ... . . .. . . . . .. ... . . . .. ....... .. ........... . .. . . . .. . . . . . ... . . . . . .
lowQualScore : 3 00 7 00 33 2 88 2 0 88 0 000 0 0 0 888888 00 0000 00 0 0 00 0000 8 00 8 000000 0 0 8 0 0 00 00000 0 00 88 0 5555 555 0 88 00 0 00000 2222 2 22 0 88 88 0 8888 0 000000 2 8888 0 2 00 222222 2 6 88 0 88 777 555 7 333333333333333 3 22 7 333333 99 3333 4 6 7 4 999 00 333 333 4 4 22 2 4 4 4 11 666 4 4 4 22 7777777 11 88888888888 0 22 0 0 0 55 7 9 1 4 9 888 4 9 4 4 4 4
consensus : NNNNNNACTTGT-ATTAAGTGCGTCG-GCA--TAATAAATATA--TTTATAAAA-GTT--ACA-GAAAAC-A-CG-TG-TGTTTATTTA-TA--AA--CTGAAGTGGGCGTATCG--ACA----TCGATACGATCGAT--T-G-GT--TGTTAAA----TTTGTTCA--CAAGTGAATAGAAAT------C-T-GAATCCGTGCTACG-C--ATGATTCAG-----GCA-CTTATAAA-GTTTGAATTTCGG--GT-TTATT-AAGT---ATTCGAA-GTTC--GCTGCTACA--TTGC-AACA-----GATT----ACTGCCCNC-CCC--CA--C-CCCACCCCT-C--AC-ATTGT--TT--TTATGTACAT---AT-ATATT-ATA-----TATATATAAC-ACGTTTAGT-GATGTCGAN-TTAT-T-T--TGACTTTTTC-TCTTT---T----GTA-GAACG--AATAC-G--T---AGTGAAA--G--A-AACTTTGTNTATTTGTGA-A-T-CGT-G-AA-TTAAAAT-CT-GT-TTGC-T-T-C--ACG-CA-GGCG-AGC-TCA--TCCT----A--TA--C------A-T--GTG-TT-TGTGTT-T-A-T--TTTATAAA-TGA-TTTATG-TTCGG---TTGAA-CTGGTG-AATT-AG-AA-CATA
Reference ( family-6531 ) : NNNNNNACTTGT-ATTAAGTGCGTCG-GCA--TAATAAATATA--TTTATAAAA-GTT--ACA-GAAAAC-A-CG-TG-TGTTTATTTA-TA--AA--CTGAAGTGGGCGTATCG--ACA----TCGATACGATCGAT--T-G-GT--TGTTAAA----TTTGTTCA--CAAGTGAATAGAAAT------C-T-GAATCCGTGCTACG-C--ATGATTCAG-----GCA-CTTATAAA-GTTTGAATTTCGG--GT-TTATT-AAGT---ATTCGAA-GTTC--GCTGCTACA--TTGC-AACA-----GATT----ACTGCCCNC-CCC--CA--C-CCCACCCCT-C--AC-ATTGT--TT--TTATGTACAT---AT-ATATT-ATA-----TATATATAAC-ACGTTTAGT-GATGTCGAN-TTAT-T-T--TGACTTTTTC-TCTTT---T----GTA-GAACG--AATAC-G--T---AGTGAAA--G--A-AACTTTGTNTATTTGTGA-A-T-CGT-G-AA-TTAAAAT-CT-GT-TTGC-T-T-C--ACG-CA-GGCG-AGC-TCA--TCCT----A--TA--C------A-T--GTG-TT-TGTGTT-T-A-T--TTTATAAA-TGA-TTTATG-TTCGG---TTGAA-CTGGTG-AATT-AG-AA-CATA
gi|1 : GAAA--G--A-AATTTTGTATATTTGTGA-A-T-C----------AAAAT-CT-GT-T-GC-T-T-C--ACG-CA-GGCG-AGC-TAA--TCCT----A--TA--C------A-C--GTG-TC-TGTGTT-T-A-T--TTTATAAA-TGA-TTTATG-TTCGG---TTGAA-CTGGTG-AATT-AG-AA-CATA
gi|10 : AC-ACGTTTAGT-GGTGCCGAT-TTAT-T-T---GACTTTCT------T---T----GTA-GAACG--GATAT-G--T---TGTGAAA--G---------TGTCGATAAA-GACA-T--GT-G-AA-T--AAAT-GT-ATGTTGC-T-TTC--ACG-CA-GGCG-AGC-TCA--TCCT----A--TA--CCTAAGTA-T--GTG--T-TGTGTT-T-A-T--TTTAacattattttaatatgcatggtactaggatgtaaaaagaaatgtgatcgagtaacggattggacataatgggattgagcacagtaagaatcgacaggggcggatcaagtggatgggaggagggggtcgtgaggtaggggatctgaaggccacttcaaggcccccagtgggtcttggtttgagcccccggaaactctttactatttttggtcatttttaatgacgagaacttgaggaaataacatcaataataaagtatctcaggctgtgtatcttagatactttattattggtgttattttctcaagttcaatctttcgaaaatgaaatacgagtaatctcaatactagtaaaagaaacaataaatcaaaagatctcgtccttgatttttctaagagtgggagattaatatccatcgctattttttatggacagacatgaacaaaaagaccatgattaaccttgaattgaaaattagggggggggttgggggtgcgcttcctttaaatccgccaagtgtgctaatctacatgtatatatgcgtgttaattgaaaacataagatatgcttaatttgtttatatggtatatttctagtgtttcattgctgaataaatgttacataactgttgcctttctatgattatggttggaatttatagtacggttcc
gi|11 : acacaaccacaaaacac-GGCG-AGC-TGT--TCCC----A--TA--C------A-CAAGTG-TT--GTGTT-TTA-T--TTCATAAA-TGA-TTTATG-TCCGT---TTGAG-TTTACG-AATT-AT-GA-CATA
gi|13 : attttgtaaaagtgtaataaaaagccatactgcattgtctAAGTGGGCGTATCG--ACA----TCGATACGATCAAT--TTG-GT--TGTAAAA----TTTGTTCA--CAAGTGAATAGAAAT------C-T-GAATCCGTGCTACG-C--Aata
gi|14 : T-CT-GT-T-GCAT-T-C--ATG-CA-TGTA-AAC-TCA--TCCC----AAATG--C------A-G--GTA-T-----------------------A-T---TTTATG-TTCGG---TGGAA-TTGATG-AATA-AG-AA-CATA
gi|15 : g--GTG-TT--GTGCT-T-AAT--TTCATAAA-TGA-TTTATG-TCCGT---TTGAG-TTGACA-AATT-AG-GA-CATAa
gi|2 : AATAAATATAATCTTATAAAAAGTT--ACCCGAAAACCA-CGATGATGTCTATTTAATATCAA--TTGAAGTGGGCGTATCGCAACAGCAATCGATACGATCGATAAT-G-GTATTGTTAAAATTATTGATTCAACCAAG-GAATGAAAATAAGATACATAGAATC-GTGCTACGACTAAAGATTCAGAAAAAGCAACTTATAAAAGCTAGAATATCAGAGGT-TTATTTAAGTGCAATTCGAAAGTTCAAGCTGCTACAAGTTGCCAACA-----GAAA----ATTATCAGA-CCCAACA--CGCCCACCACTAC--ACCATTGTAATA--TAATATAAA----AT-AAATTGATA-----TATAAATACCGATATATAGTAGATGTCGAGCTTAT-AAT--GGACTTTTT--TCTTTATGTAAGAGTA-AAACG--AAAAC-GGAT---AGTGAAA--G--A-AATTTTGTATATT--------T-CGT-G-AA--TAAAAT-CTAGT-CTGC-T-T-C--Aaca
gi|2 : AAT-AT-GT-TGGC-TGT-C--ATGGCAAGGAG-AGAATCAAATCCT----AAATA--C------AAT--GTGGTTATGTGTTAT-A-T--TTTATAAAATGA-TTTATGATTCGGAATTTGAAACTG-TG-AATT-AGAAA-CATAatagcaagagcgaagcattacataaaacccataatatgttggctgtcatggcaaggagagaatcaaatcctaaatacaatgtggttatgtgttatattttataaaatgatttatgattcggaatttgaaactgtgaattagaaacataaacagaaatcatatatattgatta
gi|3 : aataaatataatcttataaaaagttacccgaaaaccacgatgatgtctatttaatatcaattgaagtgggcgtatcgcaacagcaatcgatacgatcgataatggtattgttaaaattattgattcaaccaaggaatgaaaataagatacatagaatcgtgctacgactaaagattcagaaaaagcaacttataaaagctagaatatcagaggtttatttaagtgcaattcgaaagttcaagctgctacaagttgccaacagaaaattatcagacccaacacgcccaccactacaccattgtaatataatataaaataaattgatatataaataccgatatatagtagatgtcgagcttataatggacttttttctttatgtaagagtaaaacgaaaacggatagtgaaagaaattttgtatatttcgtgaataaaatctagtctgcttcaatagcaagagcgaagcattacataaaacccatACTTGT-ATTAAATGTGTCA-GCA--TA-TAAATATA--T--ATAAAA-GTTTAACA-GAAAAC-AACG-TG-TGTTTATTTA-TA--AAAACTGAAGTGGGCGTATCG--A----------TACGATCGAT--T-GAGT--TGTTAAA----TTTGTTCA--CAAGTGAATAGAAAT------C-T-G-CTCGATGCTACG-C--ATGATCAGG-----GCA-CTTATAAACATTTGAATTTCGGC-GTGTTA---AAGT---CTTCGAA-GTTC--GCTGCTACT--TTGC-AA-A-----GATT----ACTGCCTAC-ACC--CATTC-ACCAACCCT-C--AC-ATTGT--TTAATTGTATATATATAAT-ATATC-ATA-----TATATATAAT--CGTTTAGT-GATGTCGTT-TTAT-T-TGATCATTTTTTCATCTTT---T----GTATAAACG--AATAC-G--T---AGTGAAA--G--A-CACTTTGTTTTTTTGTGA-ATT-TGT-GAAA-TTAAAAT-CT-G--TTGC-A-T-C--A---CA-GGCG-AGC-TCA--TCCT----A--TC--A------A-T--GTG-TT-TGTGTT-T-A-T--T-----GA-TGATTTTATG-TTTGG---TTGAC-CTGGTGAAATTAAG-AA-CATAaacagaaatcatatatattgatta
gi|4 : ataacatgcACTTGTTATCA----TGTCA-ACAGTTAAGAAATATA--TTTATAAAA-GTT--ACA-GAAAAC-A-CG-TG-TGTTTATTTA-TA--A---CTGAAGTGGG-GTATCG--ACA----TCGATACGATCGAT--T-G-GT--TGTTAGA----TTTGT-CA--CAGGTGAATAGAAAT------C-T-GAATC-GTGCTACG-C--ATGATTCAG-----GCA-CTTATAAA--TTTGAATTTCGG--GT-TT-TT-AAGC---ATTCGAA-GTTC--GCTGCTACA--TTGC-AACA-----GATT----ACTGCCCCCTCCC--CA--C-CCCACCCCT-C--AC-ATTGT--TT--TTATGTACAT---GT-ACATT-ACA------GTAT-TAAC-ACGTTTAGT-GATGTCGA--TTAT-T-T--TGACTTTTTC-TCTTT---T----GTA-GAACG--AATAC-G--T---ACTGAAA--G--A-AACTTTGTTTATTTGTGA-A-T-TGTTG-AA-TTAAAAT-CT-GT-TTGC-T-T-C--AAG-CA-GGCG-AGC-TCA--TCCT----A--TA--C------A-T--GTG-TT-TGTGTT-T-A-T--TTTATAAA-TGA-TTTATGTTTCGG---TTGAA-CTGGTG-AATT-AG-AA-CATAatatcatatgtagttaatatcaaggtctacgatacagtaaaga
gi|5 : ataaaaTACA--TTGC-CGCAAAGGAGATTTTGTGCCCCCCCC-CCC--CA--C-CCCACCCCT-TCTAC-GTTGG--TT--ATATGTACAT---ATTATAT--ATAATCACTATATATA-C-ACGTTTATG-GATGTCGAA-TTAT-T-T---AATTTTCTC-TTTGT---T----GTA-TAACG--A-TACTG--T---AGTGAGAAGG--ACAACTTTGTGTATTTGTGA-A-T-TGT-G-AATTTAAAAT-CT-G--TTGC-T-T-CTGAAG-CA-GGCGAAGC-TCA---CCT----A--TAAGC------ATT--GGG-TT-TGTGTT-T-A-T--TGTATGAA---G-TTTATG-TTC-G---T--AA-CTGGTG-GAAT-AG-AACCATA
gi|7 : TATAT-T--TGA--TTTTC-T---T---T----GTAAGAATGTCGATTC-G--CTACAGTACAA--GTCATAATTCTGT-TATT-GTTA-A-TATGT-A-AA-TAATAATGCT-GA-TGCC-T-T-A--GCA-CA-GGCA-A---CCAGTTCCTTATAA--TA--C------G-T--GT--TT-TGAAGT-T-A-TAATTTGTAAAATAA-TTTATG-T-CGT---TTTGA-CTGGTG-AATT-AG-GA-CATAtatcataagtagcgttaaatcacaaaggtctacagatacaataagaaa
gi|8 : tgctttaacgtgcaactaccccaccctccctcccttgatttttctgtgttcttaTTGA-ATTAAGTGCATGGTGTA--TGATATATATA--TTTATAAAA-GTT--ACA-GAAAAC-A-CG-TG-TGTTTATTTA-TA--AA--CTGAAGTGGGCGTATCG--ACA----TCGATACGATCGAT--T-G-GT--TGTTAAA----TTTGTTCA--CAGGTGAATAGAAAT------C-T-GAATCCGTGCTACG-C--ATGATTCAG-----GTA-CTTATAAA--TTTGAATTTCGG--GT-TTATT-AAGTC--ATTCTAA-GTTC--GCTGCTACA--TTGC-AACA-----TATagttgtttttat
blockSeqs : T AG GT GT A . T . TA . AA . . . AAAA CA GCAA AA . A AT ATTA AC AAGATA A A G A TA . . CA C G ATT C . . . . AAGGA TTGT TA T . TT . TCT . TTAA TATA T T C ATCACT A C GA A GC AA GAT C TCTTTATGTAAGA T TC T CTAC AG TCAT C A T CA AT GA TTT G A TG T A G T TG TGG A A A AA TATAA AG CTAAGTAT G AT A T A AA A T A AAT A A A A C
blockSeqs : . . A . A . T . . . A . . . AA . . . . . . . . . . . C . . . . . . . TT . . . . . . . CC . . . . C . TT T . C T T A A A . T AT G T CATCTTTT A . . GAT . AC A T T AT C TG TT . . T T . . . . CG . . . GT AAA . ACAA . T . . . . A . T . . . . . .
blockSeqs : . . . . . . A . . . A . . . . . . . . . . . . . . . . . . . A . . . . . . . CC . . . . C . TT T . T . . . A A . A T T C CTCTTTT . . . T . A T T T A T G TT . . T G . . . . TG . . . . AAA . AAT . T . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . T T T CTTTGTT . . . T . A T T T A T G TA . . T T . . . . AG . . . . A . ATT . T . . . . . . . . . . . . .
blockSeqs : T . . CTTT . . . T . A G . . A T G T . . T T . . . . AG . . . . A . AG . T . . . . . . . . . . . . .
blockSeqs : . . . . . . . A T . . A T . . . . CA . . . . A . AT . T . . . . . . . . . . . . .
blockSeqs : . . . G . . . . . . . . . A . AT . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . A . GT . . . . . . . . . . . . . . .
blockSeqs : . . . . . .
blockSeqCons : ** T** CTCTTTT******** G** TT*
originalCons : NNNNNNACTTGT-ATTAAGTGCGTCG-GCA--TAATAAATATA--TTTATAAAA-GTT--ACA-GAAAAC-A-CG-TG-TGTTTATTTA-TA--AA--CTGAAGTGGGCGTATCG--ACA----TCGATACGATCGAT--T-G-GT--TGTTAAA----TTTGTTCA--CAAGTGAATAGAAAT------C-T-GAATCCGTGCTACG-C--ATGATTCAG-----GCA-CTTATAAA-GTTTGAATTTCGG--GT-TTATT-AAGT---ATTCGAA-GTTC--GCTGCTACA--TTGC-AACA-----GATT----ACTGCCCNC-CCC--CA--C-CCCACCCCT-C--AC-ATTGT--TT--TTATGTACAT---AT-ATATT-ATA-----TATATATAAC-ACGTTTAGT-GATGTCGAN-TTAT-T-T--TGACTTTTTC-TCTTT---T----GTA-GAACG--AATAC-G--T---AGTGAAA--G--A-AACTTTGTNTATTTGTGA-A-T-CGT-G-AA-TTAAAAT-CT-GT-TTGC-T-T-C--ACG-CA-GGCG-AGC-TCA--TCCT----A--TA--C------A-T--GTG-TT-TGTGTT-T-A-T--TTTATAAA-TGA-TTTATG-TTCGG---TTGAA-CTGGTG-AATT-AG-AA-CATA
finalCons : NNNNNNACTTGT-ATTAAGTGCGTCG-GCA--TAATAAATATA--TTTATAAAA-GTT--ACA-GAAAAC-A-CG-TG-TGTTTATTTA-TA--AA--CTGAAGTGGGCGTATCG--ACA----TCGATACGATCGAT--T-G-GT--TGTTAAA----TTTGTTCA--CAAGTGAATAGAAAT------C-T-GAATCCGTGCTACG-C--ATGATTCAG-----GCA-CTTATAAA-GTTTGAATTTCGG--GT-TTATT-AAGT---ATTCGAA-GTTC--GCTGCTACA--TTGC-AACA-----GATT----ACTGCCCNC-CCC--CA--C-CCCACCCCT-C--AC-ATTGT--TT--TTATGTACAT---AT-ATATT-ATA-----TATATATAAC-ACGTTTAGT-GATGTCGAN-TTAT-T-TT--GACTTTTTCTCTTTT--------GTA-GAACG--AATAC-G--T---AGTGAAA--G--A-AACTTTGTNTATTTGTGA-A-T-CGTG--AATT-AAAAT-CT-GT-TTGC-T-T-C--ACG-CA-GGCG-AGC-TCA--TCCT----A--TA--C------A-T--GTG-TT-TGTGTT-T-A-T--TTTATAAA-TGA-TTTATG-TTCGG---TTGAA-CTGGTG-AATT-AG-AA-CATA
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|6 ): TGAACAAAAAGACTATGATTTACTTTAAATTAAAAATTAGGGGAGGGGGGGGGGAGCTGGTTGCACTCCCATTAAATGCACAAAGTGTTACATGTTAATTGAAAACATTAGCTCAGTTTGTTTATATGCTGCATTTCTTATGCTTTCATCGCAGAATCATTGCCTTTCTATGTTTACAGTTTGAAGTTATACTTGTAGTATAGTTCCTTGGATGTTATCGTACAGCTAAGCTCCGCCCCCTAGAAGTTATGGTATGGTTGGAATTCTGCCAACCATTTTCTGTCTGATTTAAAGAAAGTAAAACATGCCATGTTACAACACAAT
Unaligned ( gi|9 ): TAAAATCGTAATAATCTCTGATATCATAAGTAAAAATAAATTCAAAAATCTTGTCATTTTATTTTTCTGACGGTTTGAAAAAATGACTGCTTAATTCTTTCTAATTTTATTATATACATGAGACCATACCTAGATTTGAAATTGTTTGGGGGGGGGAGGGGGGGGGGCTCTTAAATCCGTC
Unaligned ( gi|12 ): CCTTAAAAAAAGTTTGGAGGGGGGGAGGGGGAGGGATGTTACATCCCATAAAGAGCACAAAAATGGCATTTTAGTTGTAAAAAAAATATTAGCCA
Unaligned ( gi|16 ): ATTTTGTAAGATTGTGTAATAAAGAGCCTTGCTGCACTCTGTCCTGGTGAGC
Alignments
lowQualScore : 1 11 11 11 11 1 11 1 111 1 1 1 222222 11 1111 11 11 1111 11 222222 1 11 22222 1 33 22 1 1111 222 1 11 11 22222 2222 1 11 11 1 1111 1 111111 2222 1 11 222222 11 222 222222222222222 1 111111 1111 11 111 11 1111111 11111111111
lowQualScore : 3 11 0 44 88 3 33 3 0 33 0 111 0 0 0 111111 11 7777 11 8 8 11 7777 0 11 0 333333 8 8 0 5 8 11 55555 0 99 33 0 3333 777 0 33 11 8 00000 1111 0 11 0 33 33 0 7777 0 666666 0 0000 0 1 77 888888 3 5 88 8 66 888 000 3 333333333333333 3 99 6 444444 77 7777 0 6 8 1 555 22 777 222 4 4 99 7 4 4 4 66 666 4 4 4 22 2222222 66 66666666666 4 77 4 4 4 55 0 8 0 4 8 777 4 0 4 4 4 4
lowQualScore : . .. . .. .. . .. . . .. . ... . . . ...... .. .... .. . . .. .... . .. . ...... . . . . . .. ..... . .. .. . .... ... . .. .. . ..... .... . .. . .. .. . .... . ...... . .... . . .. ...... . . .. . .. ... ... . ............... . .. . ...... .. .... . . . . ... .. ... ... . . .. . . . . .. ... . . . .. ....... .. ........... . .. . . . .. . . . . . ... . . . . . .
lowQualScore : 3 00 7 00 33 2 88 2 0 88 0 000 0 0 0 888888 00 0000 00 0 0 00 0000 8 00 8 000000 0 0 8 0 0 00 00000 0 00 88 0 5555 555 0 88 00 0 00000 2222 2 22 0 88 88 0 8888 0 000000 2 8888 0 2 00 222222 2 6 88 0 88 777 555 7 333333333333333 3 22 7 333333 99 3333 4 6 7 4 999 00 333 333 4 4 22 2 4 4 4 11 666 4 4 4 22 7777777 11 88888888888 0 22 0 0 0 55 7 9 1 4 9 888 4 9 4 4 4 4
consensus : NNNNNNACTTGT-ATTAAGTGCGTCG-GCA--TAATAAATATA--TTTATAAAA-GTT--ACA-GAAAAC-A-CG-TG-TGTTTATTTA-TA--AA--CTGAAGTGGGCGTATCG--ACA----TCGATACGATCGAT--T-G-GT--TGTTAAA----TTTGTTCA--CAAGTGAATAGAAAT------C-T-GAATCCGTGCTACG-C--ATGATTCAG-----GCA-CTTATAAA-GTTTGAATTTCGG--GT-TTATT-AAGT---ATTCGAA-GTTC--GCTGCTACA--TTGC-AACA-----GATT----ACTGCCCNC-CCC--CA--C-CCCACCCCT-C--AC-ATTGT--TT--TTATGTACAT---AT-ATATT-ATA-----TATATATAAC-ACGTTTAGT-GATGTCGAN-TTAT-T-T--TGACTTTTTC-TCTTT---T----GTA-GAACG--AATAC-G--T---AGTGAAA--G--A-AACTTTGTNTATTTGTGA-A-T-CGT-G-AA-TTAAAAT-CT-GT-TTGC-T-T-C--ACG-CA-GGCG-AGC-TCA--TCCT----A--TA--C------A-T--GTG-TT-TGTGTT-T-A-T--TTTATAAA-TGA-TTTATG-TTCGG---TTGAA-CTGGTG-AATT-AG-AA-CATA
Reference ( family-6531 ) : NNNNNNACTTGT-ATTAAGTGCGTCG-GCA--TAATAAATATA--TTTATAAAA-GTT--ACA-GAAAAC-A-CG-TG-TGTTTATTTA-TA--AA--CTGAAGTGGGCGTATCG--ACA----TCGATACGATCGAT--T-G-GT--TGTTAAA----TTTGTTCA--CAAGTGAATAGAAAT------C-T-GAATCCGTGCTACG-C--ATGATTCAG-----GCA-CTTATAAA-GTTTGAATTTCGG--GT-TTATT-AAGT---ATTCGAA-GTTC--GCTGCTACA--TTGC-AACA-----GATT----ACTGCCCNC-CCC--CA--C-CCCACCCCT-C--AC-ATTGT--TT--TTATGTACAT---AT-ATATT-ATA-----TATATATAAC-ACGTTTAGT-GATGTCGAN-TTAT-T-T--TGACTTTTTC-TCTTT---T----GTA-GAACG--AATAC-G--T---AGTGAAA--G--A-AACTTTGTNTATTTGTGA-A-T-CGT-G-AA-TTAAAAT-CT-GT-TTGC-T-T-C--ACG-CA-GGCG-AGC-TCA--TCCT----A--TA--C------A-T--GTG-TT-TGTGTT-T-A-T--TTTATAAA-TGA-TTTATG-TTCGG---TTGAA-CTGGTG-AATT-AG-AA-CATA
gi|1 : GAAA--G--A-AATTTTGTATATTTGTGA-A-T-C----------AAAAT-CT-GT-T-GC-T-T-C--ACG-CA-GGCG-AGC-TAA--TCCT----A--TA--C------A-C--GTG-TC-TGTGTT-T-A-T--TTTATAAA-TGA-TTTATG-TTCGG---TTGAA-CTGGTG-AATT-AG-AA-CATA
gi|10 : AC-ACGTTTAGT-GGTGCCGAT-TTAT-T-T---GACTTTCT------T---T----GTA-GAACG--GATAT-G--T---TGTGAAA--G---------TGTCGATAAA-GACA-T--GT-G-AA-T--AAAT-GT-ATGTTGC-T-TTC--ACG-CA-GGCG-AGC-TCA--TCCT----A--TA--CCTAAGTA-T--GTG--T-TGTGTT-T-A-T--TTTAacattattttaatatgcatggtactaggatgtaaaaagaaatgtgatcgagtaacggattggacataatgggattgagcacagtaagaatcgacaggggcggatcaagtggatgggaggagggggtcgtgaggtaggggatctgaaggccacttcaaggcccccagtgggtcttggtttgagcccccggaaactctttactatttttggtcatttttaatgacgagaacttgaggaaataacatcaataataaagtatctcaggctgtgtatcttagatactttattattggtgttattttctcaagttcaatctttcgaaaatgaaatacgagtaatctcaatactagtaaaagaaacaataaatcaaaagatctcgtccttgatttttctaagagtgggagattaatatccatcgctattttttatggacagacatgaacaaaaagaccatgattaaccttgaattgaaaattagggggggggttgggggtgcgcttcctttaaatccgccaagtgtgctaatctacatgtatatatgcgtgttaattgaaaacataagatatgcttaatttgtttatatggtatatttctagtgtttcattgctgaataaatgttacataactgttgcctttctatgattatggttggaatttatagtacggttcc
gi|11 : acacaaccacaaaacac-GGCG-AGC-TGT--TCCC----A--TA--C------A-CAAGTG-TT--GTGTT-TTA-T--TTCATAAA-TGA-TTTATG-TCCGT---TTGAG-TTTACG-AATT-AT-GA-CATA
gi|13 : attttgtaaaagtgtaataaaaagccatactgcattgtctAAGTGGGCGTATCG--ACA----TCGATACGATCAAT--TTG-GT--TGTAAAA----TTTGTTCA--CAAGTGAATAGAAAT------C-T-GAATCCGTGCTACG-C--Aata
gi|14 : T-CT-GT-T-GCAT-T-C--ATG-CA-TGTA-AAC-TCA--TCCC----AAATG--C------A-G--GTA-T-----------------------A-T---TTTATG-TTCGG---TGGAA-TTGATG-AATA-AG-AA-CATA
gi|15 : g--GTG-TT--GTGCT-T-AAT--TTCATAAA-TGA-TTTATG-TCCGT---TTGAG-TTGACA-AATT-AG-GA-CATAa
gi|2 : AATAAATATAATCTTATAAAAAGTT--ACCCGAAAACCA-CGATGATGTCTATTTAATATCAA--TTGAAGTGGGCGTATCGCAACAGCAATCGATACGATCGATAAT-G-GTATTGTTAAAATTATTGATTCAACCAAG-GAATGAAAATAAGATACATAGAATC-GTGCTACGACTAAAGATTCAGAAAAAGCAACTTATAAAAGCTAGAATATCAGAGGT-TTATTTAAGTGCAATTCGAAAGTTCAAGCTGCTACAAGTTGCCAACA-----GAAA----ATTATCAGA-CCCAACA--CGCCCACCACTAC--ACCATTGTAATA--TAATATAAA----AT-AAATTGATA-----TATAAATACCGATATATAGTAGATGTCGAGCTTAT-AAT--GGACTTTTT--TCTTTATGTAAGAGTA-AAACG--AAAAC-GGAT---AGTGAAA--G--A-AATTTTGTATATT--------T-CGT-G-AA--TAAAAT-CTAGT-CTGC-T-T-C--Aaca
gi|2 : AAT-AT-GT-TGGC-TGT-C--ATGGCAAGGAG-AGAATCAAATCCT----AAATA--C------AAT--GTGGTTATGTGTTAT-A-T--TTTATAAAATGA-TTTATGATTCGGAATTTGAAACTG-TG-AATT-AGAAA-CATAatagcaagagcgaagcattacataaaacccataatatgttggctgtcatggcaaggagagaatcaaatcctaaatacaatgtggttatgtgttatattttataaaatgatttatgattcggaatttgaaactgtgaattagaaacataaacagaaatcatatatattgatta
gi|3 : aataaatataatcttataaaaagttacccgaaaaccacgatgatgtctatttaatatcaattgaagtgggcgtatcgcaacagcaatcgatacgatcgataatggtattgttaaaattattgattcaaccaaggaatgaaaataagatacatagaatcgtgctacgactaaagattcagaaaaagcaacttataaaagctagaatatcagaggtttatttaagtgcaattcgaaagttcaagctgctacaagttgccaacagaaaattatcagacccaacacgcccaccactacaccattgtaatataatataaaataaattgatatataaataccgatatatagtagatgtcgagcttataatggacttttttctttatgtaagagtaaaacgaaaacggatagtgaaagaaattttgtatatttcgtgaataaaatctagtctgcttcaatagcaagagcgaagcattacataaaacccatACTTGT-ATTAAATGTGTCA-GCA--TA-TAAATATA--T--ATAAAA-GTTTAACA-GAAAAC-AACG-TG-TGTTTATTTA-TA--AAAACTGAAGTGGGCGTATCG--A----------TACGATCGAT--T-GAGT--TGTTAAA----TTTGTTCA--CAAGTGAATAGAAAT------C-T-G-CTCGATGCTACG-C--ATGATCAGG-----GCA-CTTATAAACATTTGAATTTCGGC-GTGTTA---AAGT---CTTCGAA-GTTC--GCTGCTACT--TTGC-AA-A-----GATT----ACTGCCTAC-ACC--CATTC-ACCAACCCT-C--AC-ATTGT--TTAATTGTATATATATAAT-ATATC-ATA-----TATATATAAT--CGTTTAGT-GATGTCGTT-TTAT-T-TGATCATTTTTTCATCTTT---T----GTATAAACG--AATAC-G--T---AGTGAAA--G--A-CACTTTGTTTTTTTGTGA-ATT-TGT-GAAA-TTAAAAT-CT-G--TTGC-A-T-C--A---CA-GGCG-AGC-TCA--TCCT----A--TC--A------A-T--GTG-TT-TGTGTT-T-A-T--T-----GA-TGATTTTATG-TTTGG---TTGAC-CTGGTGAAATTAAG-AA-CATAaacagaaatcatatatattgatta
gi|4 : ataacatgcACTTGTTATCA----TGTCA-ACAGTTAAGAAATATA--TTTATAAAA-GTT--ACA-GAAAAC-A-CG-TG-TGTTTATTTA-TA--A---CTGAAGTGGG-GTATCG--ACA----TCGATACGATCGAT--T-G-GT--TGTTAGA----TTTGT-CA--CAGGTGAATAGAAAT------C-T-GAATC-GTGCTACG-C--ATGATTCAG-----GCA-CTTATAAA--TTTGAATTTCGG--GT-TT-TT-AAGC---ATTCGAA-GTTC--GCTGCTACA--TTGC-AACA-----GATT----ACTGCCCCCTCCC--CA--C-CCCACCCCT-C--AC-ATTGT--TT--TTATGTACAT---GT-ACATT-ACA------GTAT-TAAC-ACGTTTAGT-GATGTCGA--TTAT-T-T--TGACTTTTTC-TCTTT---T----GTA-GAACG--AATAC-G--T---ACTGAAA--G--A-AACTTTGTTTATTTGTGA-A-T-TGTTG-AA-TTAAAAT-CT-GT-TTGC-T-T-C--AAG-CA-GGCG-AGC-TCA--TCCT----A--TA--C------A-T--GTG-TT-TGTGTT-T-A-T--TTTATAAA-TGA-TTTATGTTTCGG---TTGAA-CTGGTG-AATT-AG-AA-CATAatatcatatgtagttaatatcaaggtctacgatacagtaaaga
gi|5 : ataaaaTACA--TTGC-CGCAAAGGAGATTTTGTGCCCCCCCC-CCC--CA--C-CCCACCCCT-TCTAC-GTTGG--TT--ATATGTACAT---ATTATAT--ATAATCACTATATATA-C-ACGTTTATG-GATGTCGAA-TTAT-T-T---AATTTTCTC-TTTGT---T----GTA-TAACG--A-TACTG--T---AGTGAGAAGG--ACAACTTTGTGTATTTGTGA-A-T-TGT-G-AATTTAAAAT-CT-G--TTGC-T-T-CTGAAG-CA-GGCGAAGC-TCA---CCT----A--TAAGC------ATT--GGG-TT-TGTGTT-T-A-T--TGTATGAA---G-TTTATG-TTC-G---T--AA-CTGGTG-GAAT-AG-AACCATA
gi|7 : TATAT-T--TGA--TTTTC-T---T---T----GTAAGAATGTCGATTC-G--CTACAGTACAA--GTCATAATTCTGT-TATT-GTTA-A-TATGT-A-AA-TAATAATGCT-GA-TGCC-T-T-A--GCA-CA-GGCA-A---CCAGTTCCTTATAA--TA--C------G-T--GT--TT-TGAAGT-T-A-TAATTTGTAAAATAA-TTTATG-T-CGT---TTTGA-CTGGTG-AATT-AG-GA-CATAtatcataagtagcgttaaatcacaaaggtctacagatacaataagaaa
gi|8 : tgctttaacgtgcaactaccccaccctccctcccttgatttttctgtgttcttaTTGA-ATTAAGTGCATGGTGTA--TGATATATATA--TTTATAAAA-GTT--ACA-GAAAAC-A-CG-TG-TGTTTATTTA-TA--AA--CTGAAGTGGGCGTATCG--ACA----TCGATACGATCGAT--T-G-GT--TGTTAAA----TTTGTTCA--CAGGTGAATAGAAAT------C-T-GAATCCGTGCTACG-C--ATGATTCAG-----GTA-CTTATAAA--TTTGAATTTCGG--GT-TTATT-AAGTC--ATTCTAA-GTTC--GCTGCTACA--TTGC-AACA-----TATagttgtttttat
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|6 ): TGAACAAAAAGACTATGATTTACTTTAAATTAAAAATTAGGGGAGGGGGGGGGGAGCTGGTTGCACTCCCATTAAATGCACAAAGTGTTACATGTTAATTGAAAACATTAGCTCAGTTTGTTTATATGCTGCATTTCTTATGCTTTCATCGCAGAATCATTGCCTTTCTATGTTTACAGTTTGAAGTTATACTTGTAGTATAGTTCCTTGGATGTTATCGTACAGCTAAGCTCCGCCCCCTAGAAGTTATGGTATGGTTGGAATTCTGCCAACCATTTTCTGTCTGATTTAAAGAAAGTAAAACATGCCATGTTACAACACAAT
Unaligned ( gi|9 ): TAAAATCGTAATAATCTCTGATATCATAAGTAAAAATAAATTCAAAAATCTTGTCATTTTATTTTTCTGACGGTTTGAAAAAATGACTGCTTAATTCTTTCTAATTTTATTATATACATGAGACCATACCTAGATTTGAAATTGTTTGGGGGGGGGAGGGGGGGGGGCTCTTAAATCCGTC
Unaligned ( gi|12 ): CCTTAAAAAAAGTTTGGAGGGGGGGAGGGGGAGGGATGTTACATCCCATAAAGAGCACAAAAATGGCATTTTAGTTGTAAAAAAAATATTAGCCA
Unaligned ( gi|16 ): ATTTTGTAAGATTGTGTAATAAAGAGCCTTGCTGCACTCTGTCCTGGTGAGC