lowQualScore : 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 111 8888888888888888888888888888888888888888888888888888888888 1111 111111 4444444444 111 1 111 1 1111111 22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 2 33 11 1111 33 22222222 66666666666666666 1 33333333333 222 222222222222 1 1 111 333 1 2222 5555555555555 111 22 5555555 1 1 222222222 1 11 1 111 1 1 1 5555555555555555555 555555555 11111 1111 1 1 11 3333 11 1 11 222 1 2 222 111111 11 22 1 1 1 111 333 1 111 1 3333333 22222222 222222 33333333 111 1 11 1 111 1 111 11111111111 1 11 111 1 111 1 33333 22222 1 1 2222222 1 33333 11 1 1 11 1 1 11 1 11 1 1 11 2222 11 2222 1 1
lowQualScore : 111 6 1 999999 3 5 8888888888888888888888888888888888888888888888888888888888 2222 0 444444 5 5555555555 1 5 444 5 6 6 111 3 9999999 99 22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 6 7 0 33 44 44 4444 1 00 6 66666666 7 77777777777777777 3 6 99999999999 77 6 888 888888888888 0 0 777 111 0 4 0 0000 8888888888888 222 7 55 4444444 444 7 0 5 222222222 0 88 7 5 444 0 0 0 6666666666666666666 2 2 000000000 55555 7777 0 0 33 8888 3 0 0 55 8 0 33 2 000 0 1 222 55 000000 66 3 6 33 0 0 9 3 5 2 777 4 444 0 2 2 444 0 7777777 2 44444444 44 444444 88888888 777 5 33 0 2 666 8 0 3 1 777 44444444444 0 33 333 0 777 2 0 8 6 2 2 88888 22 55555 3 0 0 6666666 0 88888 22 2 0 0 2 2 33 5 0 33 0 33 0 0 33 2 8888 88 8888 3 3
lowQualScore : ... . . ...... . . .......................................................... .... . ...... . .......... . . ... . . . ... . ....... .. ....................................................................................................................... . . . .. .. .. .... . .. . ........ . ................. . . ........... .. . ... ............ . . ... ... . . . .... ............. ... . .. ....... ... . . . ......... . .. . . ... . . . ................... . . ......... ..... .... . . .. .... . . . .. . . .. . ... . . ... .. ...... .. . . .. . . . . . . ... . ... . . . ... . ....... . ........ .. ...... ........ ... . .. . . ... . . . . ... ........... . .. ... . ... . . . . . . ..... .. ..... . . . ....... . ..... .. . . . . . .. . . .. . .. . . .. . .... .. .... . .
lowQualScore : 777 0 7 555555 7 7 9999999999999999999999999999999999999999999999999999999999 0000 7 444444 7 6666666666 4 7 333 0 7 7 777 3 0000000 77 00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 7 0 4 00 00 33 2222 0 33 7 33333333 3 22222222222222222 3 7 88888888888 77 7 777 888888888888 0 0 555 555 0 0 8 5555 2222222222222 222 0 55 5555555 555 0 0 5 000000000 0 88 0 0 555 0 0 0 8888888888888888888 5 5 000000000 00000 8888 0 0 88 8888 2 2 8 88 8 0 88 5 888 0 2 555 88 888888 55 2 5 88 0 0 8 2 0 5 555 0 555 0 5 5 000 0 5555555 5 55555555 00 555555 55555555 000 0 88 0 5 222 8 0 2 2 555 00000000000 0 88 222 0 555 5 0 8 5 5 5 88888 88 00000 2 0 0 0000000 0 88888 55 5 0 0 5 5 88 5 0 88 0 88 0 0 88 5 3333 33 3333 3 3
consensus : TTTTT---TTATAATTTTT-TATT-TTTTTCAGACAT-CTGT--AT--TTTTCA-TTCA--AT--A-A-------AT------AC-AT-AAT-----TAGCA--A-AACATA-AGTTCAAG-AATC----AATACCAGACTTTT-TTTTAAGTGAAAGAG-AGAG-A---GA-GAGAA--A----TAGAGCGAGTAGNTAGAGTGTAAGCTGCTGAGAACGATTAGGTCGTCAATCTGTCTCACTGGTATGACAAATATTTCATTTAGTTCCTCATTTTTGTAGAAATAATAATTGTTTGTGTTTATAAAAGAATTCTAAGGTAAGTATATTTGGCAAAACGAANTGCTCA-CAAT----TTCTC--AG-TACATCTGTG-CTGTATATAAT-ATNATAG--C-T--TC-A-ACCAA----AGG-ATAGG-GT-ATG--TTTGAAT-ACTTCTT-GT-TTAT-TCAAG-GATAC---CTAA-ANAT-AAANGATTTTTTTCA-TAAAA-A--CTAGT-TCGTGAGGGTGTGAT-ATTTTTGTTCACA-GT-ATANGGTTTCA-ACTCATTTTAGGAATG-CGTG---TGAA-CATTAATCGCAGTTCCCGACA-GT-ATATGT-CTANTC-TG-GTTGTCTNACT-TCCTCTCTTTGACAAGA--GGC----CA--TG-TT--G-G-AG-TTT--ACCTT-T--ATTTTGGATAGA-AAAGAATGTGGT-TT--CCTAGAGGAT-TC-TATTA-TTAAGTTC-TGGT-TA-CTTGGAAACC--ATTGC-AG-TTTACAAATTTTTAGTGTANTT---TGANAG--GGTAAT-TGTGTGGATATTTCT-TCATTCTA-TA------GTATCT----TT--CAACAAATTCACTCCAT-C-TAT---TGT--GCT-CCTGTGTGTC--ACTGAAGAA-TTCTTATTTNA-C-ATTTCATGAA-AAGAATTTTGATTTCTTACA---CTAATGG-AACATTGTAACATTTG-TTTC--AATAAATAGGATTTGG-TACT---TGT-TTAAAGTTACTTGTTCTACANTT-----TTTTATGNCCA-----TTGTTTTTAAT-GCA-TGAA-----T-ATAC-TG-C---TATTCTCATGAAGTTAATTTTC-CA-TTGGGAT--TAATATAG-CCATAA--AAT-TCTCAAT--GC-GA-AAGA--AGTACCTATCTGT----TAATGAT--ATATTT----TATATATC-TGACAGCACTGT-CGAATAGTATTGTTTATTAAAAAATGCTTTACCACCAATATGGGATCATAGGGAGTTAAAAAGAGTACAGTGAGTCTGACAGATGACATCAGACTGTTAATGAGTTCTGCAGCTCAATCTCATGCCTAAAATACATCTACCAAAAGTTTGTTTTGTTAATGATTTCAAAGTCGTATTAGATGTATTCCAGTTCCACGATGTGATTTGAAAGTTCTAATTTAGGAATGAGATATTTGCTTCAATTTCTTTTGTTAAGTGAAGTTGCCTTATCCAAACTAATTTCAGAGAGGCAATTAAAGATTTGAAATGTCCCATTTGTAAAAGACACCTGCGAACTGATGTTTGAAATATCTAATTGTTGTTTTTAATAAAGT
Reference ( gi|2 ) : TTTTT---TTATAATTTTT-TATT-TTTTTCAGACGT-CTG---AT--TTTTC--TTCA--AT--A-A-------AT------AC-AT-AAT-----TAGCA--A-AACATA-AGTTCAAA-AATC-TG-AATACCAGACTTTT-TTTTAAGTGAAACAG-AGAG-A---GA-GAGAA--A----TAGAGCGAGTAGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTAAGGTAAGTATATTTGGCAA--CGAAGTGCTCA-CAAT----TTTTCCTAG-TAC-TCTGTGTCTGTATATAATCGTTATAG--C-TG-TC-A-ACCAA----AG--ATAGG-GT-ATG-TTTTGAATGACTTCTT-GT-TTAT-TCAAG-GATAC---CTAATAGAT-AAATGATTTTTTTCA-TAAAATATTCTAGTGTCGTGAGGGTGTGAT-ATTTTTGTTCACAGGTGATATGGTTTCA-ACTCATTTTAGGAATG-CGTG---TGAA-CATTAATCACAGTTCCCGACA-GT-ATATGT-CTAGTC-TG-GTTGTCTGATT-TCTTCTCTTTGACAAGA--G------CA--TG-TT--G-G-AG-TTT--ACCTT----ATTTTGGATAGAGAAAGAATGTGGT-TT--CCTAGAGGAT-TCGTATTA-TGAAGTTC-TGGT-TA-CTTGGAAATC--ATTGC-AG-TTTACAAATTTTTAGTGTAGTT---TGATAGT-GGTAAT-TGTGTGGATATTTCT-TCATTCTA-TA------GTATCT----TT--CAACAAATTCACTC-AT-C-TAT---TG---GCT-CTTGTGTGTC--ACTGAAGAA-TTCTTATTTCA-C-ATTTCATGAA-AAGAATTTTGATTTCTTACA---CTAATGG-AACATTGTAACATTTG-TTTC--AATAAATAGGATTTGG-TACT---TGT-TTAAAGTTACTTATTCTACAGTT-----TTTTATGCCCA-----TTGTTTTTAAT-GCA-TGAA-----T-ATAC-TG-----TATTTTCATGAAGTTAATTTTC-CA-TTGGGAT--TAATATAG-CCATAA--AAT-TCTCAAT--GC-GA-AAGA--AGTACCTATTTGT----TAATGAT--ATATTT----TATATATC-TGACAGCACTGT-CAAATAGTATTGTTTATTAAAAAATGCTTTACCACCAATATGGGATCATAGGGAGTTAAAAAGAGTACAGTGAGTCTGACAGATGACATCAGACTGTTAATGAGTTCTGCAGCTCAATCTCATGCCTAAAATACATCTACCAAAAGTTTGTTTTGTTAATGATTTCAAAGTCGTATTAGATGTATTCCAGTTCCACGATGTGATTTGAAAGTTCTAATTTAGGAATGAGATATTTGCTTCAATTTCTTTTGTTAAGTGAAGTTGCCTTATCCAAACTAATTTCAGAGAGGCAATTAAAGATTTGAAATGTCCCATTTGTAAAAGACACCTGCGAACTGATGTTTGAAATATCTAATTGTTGTTTTTAATAAAGT
gi|1 : TTTTT---TTATAATTTTTGTATT-TTTTTCAGACAT-CTGT--AT--TTTTT--TGCA---T--A-A-------AT-------C-AA-AAT-----ATGCA--A-AACATACAGTTCAAACAATCATGCAATACACGACTTTT-TTTTAAGTGAAAGAG-AGAG-A---GAAGACAC--A----TAGAGCGA--AGATAGAGTGTAAGCTGCTGAGAACGATTAGGTCGTCAATCTGTCTCACTGGTATGACAAATATTTCATTTAGTTCCTCATTTTTGTAGAAATAATAATTGTTTGTGTTTATAAAAGAATTCTAAGGTAAGTATAGTTTGCAA--CCGAATGCTCA--AATCGCATTTTCCTAGACAT-CCTGTGTCTGTATATA-----TATAATAC-TAATC-ATACCAA----AGG-ATAGG-GTGATGATTTTGAAT-ACTTCTTCGTGTTAT-TCAAGTGATACACGCTTAAACAT-AAATGATTTTTT-CA-TAAAA-A--CTAGT-TCGTGAGG-CGTTATGATTTTTGTTC-CACAT-ATATG-TTTCA-ACTCTCTTTAGGAAT--CGTG---TGAAACAT-AATC-CAGTTCCCG-CATGT-ATATGTTCTA-TCATGCGTT-TCTA----TCTT-TCTTTGACAAGACGG------CA--TG-TTCGG-G-AG-CTTTCACCTTGTTAATTTTGGATAGGCAAAGAATGTGGTGTT--CCTAGAG-AT-TCTAATTA-T-AAGTTC-TGGT-TAACTTG--AATCCGATTGCCAGCTTTACAAATTTTT--TGTAGTTAATTGATAGAAGGTAAT-TGTGTGGATATTTCT-TCATTCTAGTA-------TATCT----TTTCCAACAAATTCACTC-ATCC-TAT---T----GCT-CCTGTGTGTC--ACTGAAGAA-TTCTTATTTCA-C-ATTTCATGAA-AAGAATTTTGATTTCTTACA---CTAATGG-AACATTGTAACATTTG-TTTC--AATAAATAGGATTTGG-TACT---TGT-TTAAAGTTACTTATTCTACAGTT-----TTTTATGCCCA-----TTGTTTTTAAT-GCA-TGAA-----T-ATAC-TG-----TATTTTCATGAAGTTAATTTTC-CA-TTGGGAT--TAATATAG-CCATAA--AAT-TCTCAAT--GC-GA-AAGA--AGTACCTATTTGT----TAATGAT--ATATTT----TATATATC-TGACAGCACTGT-CAAATAGTATTGTTTATTAAAAAATGCTTTACCACCAATATGGGATCATAGGGAGTTAAAAAGAGTACAGTGAGTCTGACAGATGACATCAGACTGTTAATGAGTTCTGCAGCTCAATCTCATGCCTAAAATACATCTACCAAAAGTTTGTTTTGTTAATGATTTCAAAGTCGTATTAGATGTATTCCAGTTCCACGATGTGATTTGAAAGTTCTAATTTAGGAATGAGATATTTGCTTCAATTTCTTTTGTTAAGTGAAGTTGCCTTATCCAAACTAATTTCAGAGAGGCAATTAAAGATTTGAAATGTCCCATTTGTAAAAGACACCTGCGAACTGATGTTTGAAATATCTAATTGTTGTTTTTAATAAAG
gi|4 : tttttTTCTT---TTTTAATT-----------TTTCAAGCAT-CTG---TA--TATTCAATTCA--ATTCACA-------AT------AC-AA-AATATGCATAGCA--A-AA--------TCAAG-TATC----AATA-CAGAC-TTT-TTTTAA--GAAAGAG-AGAGAA---GA-AAGAAGGA----TAAAG
gi|8 : ttcttcTTTTTTTTTTAT-ATTTTT-TA---TTTTTCAAGCAT-CTGTAAATAGTTTGT--TTTAC-AT-------------T------ACAAT-AA------TAGCA--T-AACA-A-ATATCAAG-CATC----AAT--CAGACTTTTATTTTAA--GAAAGAGAAGAG-A---TA-AAGAA--AGAATTAGAGAGAGaactatgatgtgtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncaatttctcagtacatcttgctgtatatataatacttcaaccaaaggataagagtattttgaatacccttgtttatctcaaggatacctaaattaaaagattttctttagtaaaaacaagttgaagctttgttttttgttcctcataaagttcacactcatttaggaatgcttgaattcaatatttcgcattccacagttatatttctattgtttcttactgtactcttttgacaaaaggctacacatacttggtagatttacattattgaacttagtttttcctaggatatctattaataatttcattgtatattgaaaaccgattgcagtttacaattttatagttattctgaaaggtaatttgtggatatttttgccattctatattactcgtatttccaaataactcactccattatacctgtatgttacctgttgttcgactgaagaaattcttatctaaacgattgcatcaataagctgggattttttacatctctgaagacaataataaacatttggtttcttaataaggattggggtacaacatgtcttaaagttaactgttttaacttttatcttctattaccaactccttttttttattgcattgaatgaggtataccgatatatattctcttcccattgatcataaatagcccataagcaatccctcgataggctgaaaaaagagtgcatctccgtgttataatgattaatatgtatgatatagaccttgacaccactatacgtataatat
gi|6 : aagggaaaaaaatgatttcggtccttaattggcgacgaattttttTTTGT---TGATAATCTTT-TCTTATTTTTCAGACAT-CTGT--AT--TTCTCATTTCATCAT--G-A-------ATTGCAAAAC-ATTGAT-----C-GCACGA-AGCA-A-AGTTAAAA-AATC-C--AAT--TAGACTTTT-TTTT---TAAAA-AG-AAAG-AATGGATGAGAA--A----aatagagtgtgaggcttatgaaattaggttctctgtgtccactggcatcaaacattcttttcttatagtttgtgtaaaagataatttttttgtgtttca
gi|9 : tttggtTTTTT---TCATGATTCTT-TATT-TTTTT-AAACAT-CTGT--AT--ATTTC------------------------------AC-------------AACA--ACAACATA-AGGTCCAA-A--C----AAT-CGAGA---TT-TTTTA--TGAGAAAG-AGAG-A---GA-Gggaaagatgtgtagagagacatagagtgtaagtcttattnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncatctatttcagatccgcatattggcaaaacgaattgctcaacaatttctcagtacatcttgctgtataatataatacttcaaaccagtagtggaagtgtatgttgaat
gi|12 : tttttTTTTT---TTATTATTTCT-TATT-TTT--CAAACATGTTGT--AT--ATTTAA-TTCA--AT--A-ATACGAAAAT------AC-AT-GAT-------GCA--T-AGAATG-A--TCAAG-AATC-----ATAT-AGACTTTT-TT---AGTGAAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngaaatttgccatttttgtaaaatataattttttttgt
gi|3 : atttttAGACGT-CTG---AT--TTTTC--TTCA--AT--A-A-------AT------AC-AT-AAT-----TAGCA--A-AACATA-AGTTCAAA-AATC-TG-AATACCAGACTTTT-TTTTAAGTGAAACAG-AGAG-A---GA-GAGAA--A----TAGAGCGAGTAGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTAAGGTAAGTATATTTGGCAA--CGAAGTGCTCA-CAAT----TTTTCCTAG-TAC-TCTGTGTCTGTATATAATCGTTATAG--C-TG-TC-A-ACCAA----AG--ATAGG-GT-ATG-TTTTGAATGACTTCTT-GT-TTAT-TCAAG-GATAC---CTAATAGAT-AAATGATTTTTTTCA-TAAAATATTCTAGTGTCGTGAGGGTGTGAT-ATTTTTGTTCACAGGTGATATGGTTTCA-ACTCATTTTAGGAATG-CGTG---TGAA-CATTAATCACAGTTCCCGACA-GT-ATATGT-CTAGTC-TG-GTTGTCTGATT-TCTTCTCTTTGACAAGA--G------CA--TG-TT--G-G-AG-TTT--ACCTT----ATTTTGGATAGAGAAAGAATGTGGT-TT--CCTAGAGGAT-TCGTATTA-TGAAGTTC-TGGT-TA-CTTGGAAATC--ATTGC-AG-TTTACAAATTTTTAGTGTAGTT---TGATAGT-GGTAAT-TGTGTGGATATTTCT-TCATTCTA-TA------GTATCT----TT--CAACAAATTCACTC-AT-C-TAT---TG---GCT-CTTGTGTGTC--ACTGAAGAA-TTCTTATTTCA-C-ATTTCATGAA-AAGAATTTTGATTTCTTACA---CTAATGG-AACATTGTAACATTTG-TTTC--AATAAATAGGATTTGG-TACT---TGT-TTAAAGTTACTTATTCTACAGTT-----TTTTATGCCCA-----TTGTTTTTAAT-GCA-TGAA-----T-ATAC-TG-----TATTTTCATGAAGTTAATTTTC-CA-TTGGGAT--TAATATAG-CCATAA--AAT-TCTCAAT--GC-GA-AAGA--AGTACCTATTTGT----TAATGAT--ATATTT----TATATATC-TGACAGCACTGT-CAAATAGTATTGTTTATTAAAAAATGCTTTACCACCAATATGGGATCATAGGGAGTTAAAAAGAGTACAGTGAGTCTGACAGATGACATCAGACTGTTAATGAGTTCTGCAGCTCAATCTCATGCCTAAAATACATCTACCAAAAGTTTGTTTTGTTAATGATTTCAAAGTCGTATTAGATGTATTCCAGTTCCACGATGTGATTTGAAAGTTCTAATTTAGGAATGAGATATTTGCTTCAATTTCTTTTGTTAAGTGAAGTTGCCTTATCCAAACTAATTTCAGAGAGGCAATTAAAGATTTGAAATGTCCCATTTGTAAAAGACACCTGCGAACTGATGTTTGAAATATCTAATTGTTGTTTTTAATAAAGT
gi|5 : CTAAG-TAAG-ATATT--GCAAAATGA-GTGCTAA-TAAT----TTCTC--AG-TTC-ATCATG-CTGTATATG-----TATAG--TATT-TC-A-ACCAT----AGGAAAAGA-GT-AT---TTTCAAT------------------CATG-AATAC---CCAA--AAT-AAAAGATTTTGTG-G-TAAAA-A--CCAAT----CGAAGGT-TGGT--TTTATCTTCA-------TAAAGTTCAA-ACTCATCT-ACGAATGAC------TGAA-CAA-AATCACA-TTCCC-ACA-GT-AACTGT-TCAAT-------TGTTT--CC-TCCTCCCTGTGACAAAA--GGTA---CAGATC-TT--AAG-AG-TTT--ATCTTTTA-GTTTTGAACAGA-AAAGAAT-TAGT-TG--C-TAAA--AT-TC-TATTAATTA--TTC-TA---TA-TT--GAAACC--ATTGG-AG-TTTCCAA-TTTTTAGT-TATTT---TGAAAG---GTAAGATGT-TGAAAATTTC---CATTCTC-TA------TTATCTATAGCT--AAACAA--TCGCTCCAT-CGTAT---TGT--GCC---TGC-CGTC--ATCGCATTG-TTTTTGTTTAA-A-ATCTCGT-AA-AAGAAATTTGGCTTTTTATT---CTAAT-----------------------------AAGT-GGATTTGG-TAAT---T-T-TCAAAGTTA-TTGCT-TGCACCTGG---CTTTATAATCA-----AAG-TCCTAATAGCA-TGAA-----TAATACTTGCC---CAATCTGA-GAATTTAATCTTCACACTTGG--T--TAA-GTAG-CACTAA--AGT-TCTCATA--GC-TACAAAA--CGTA-CTATCTc
gi|6 : cgtcatttttgtaaaatatgattttttttttggtgtttcataagatatGCATATT-GGCAAAACGAATTGCTCAACAAT----TTCTC--AG-TACATCT-TG-CTG--TATAAT-ATAATA---C-T--TCAA-ACCAGTAGTGG--A-AGT-GT-ATG---TTGAATttctt
gi|11 : tttggttttgttgataatcttttcttatttttcagacatctgtatttctcatttcatcatgaattgcaaaacattgatcgcacgaagcaaagttaaaaaatccaattagactttttttttaaaaagaaagaatggatgagaaaggaaagatgtgtagagagacatagagtgtaagtcttattnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncatctatttcagatccATATT-GGCAAAACGAATTGCTCAACAAT----TTCTC--AG-TACATCT-TG-CTG--TATAAT-ATAATA---C-T--TCAA-ACCAGTAGTGG--A-AGT-GT-ATG---TTGAATAA
gi|4 : -CAAT----TTCTC--AG-TACATCT-TG-CTGTATATA----TAATA---C-T--TC-A-ACCAA----AGG-ATAAGAGT-AT---TTTGAAT-ACC-CTT-GT-TTATCTCAAG-GATAC---CTAA---ATTAAAAGATTTTCTTTAGTAAAA-A--CAAGT----TGAAGCTTTG-T--TTTTTGTTC-C---TCATAAAGTT-CACACTCATTT-AGGAATG-CTTGAATTCAA-TATT--TCGCA-TTCC--ACA-GTTATATTT-CTATT-----GTT-TCTTACTGTACTCT-TTTGACAAAA--GGCTACACA--TACTT--G-GTAGATTT--ACATT----ATT-------------GAACTTAGT-TTTTCCTAG--GATATC-TATTA-ATAATTTCATTGTATA--TTGAAAACCG-ATTGC-AG-TTTACAATTTTATAGT-TATTC---TGAAAG---GTAAT-T-TGTGGATATTTTTGCCATTCTA-TATTACTCGTAT-T----TC--CAAATAACTCACTCCAT---TATACCTGTATGTTACCTGT-TGTTCGACTGAAGAAATTCTTATCTAAACGATTGCATCAATAAG--CTGGGATTTTTTACATCTCTGAAGACAATAATA-AACATTTGGTTTCTTAATAA---GGATTGGGGTACAACATGTCTTAAAGTTAACTGTTTTA-ACTTTTATCTTCTATTACCAACTCCTTTTTTTTATT-GCATTGAATGAGGT-ATAC-CGATATATATTCTC-----------TTCC-CA-TT--GATCATAA-ATAGCCCATAAGCAATCCCTCGATAGGCTGA-AAAAAGAGTGCATCTCCGTGTTATAATGATTAATATGTATGATATAGACCTTGACACCACTATACGTATAATATaaatctgctgtatttacaacttatggtaaaacgtcatgacaaacgaaggtatgggcgtttctattcgcttaataatgagtttagacatatttatg
6 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|7 ): ACCACAAAATTAAGGGGCAACAATTATTTTTTTATTCTTTATTTTTCAAGGCATTAGTATATTAATTCACAAACAAAATATGCATAACAAAATCAAGAATCAATACAGACTTTTTTAAAGAATTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACAA
Unaligned ( gi|10 ): TTCATCAANGGTTTCAGTTTCCTTTTTTACAAAAAGTACATAAATCTGTATCTTTGGTTTTATGCAAAAAGAAGTTTGTTGAGAGAATAATATGATTTATTTGAAACTGAAACCATTGGAATTTTGTATTCTTAGTAAGCTTGAATGGGAGGGCAAATATATTTTCCCATTCATCATCACTCAGATCGA
Unaligned ( gi|13 ): AATTTGTCAGTACATCTTGCTATACAAATATAGTACTTCAACCATAGGAAAAGAGTATTTTATATGGTTAATTTTTTATCATGAATACCCAAAATGAATTTTT
Unaligned ( gi|14 ): TTACAAGAAATAGTTGTAAAAGGTGGCATTCCCATAAACGGTGTTCCTTTGGCAAAAGTTGCAATATTAAGAGTCTATACTTTTTAATTTTGAACAGGAA
Unaligned ( gi|15 ): CATTTTTGTAAAACATAAATTTTTGTGTTTCGTAAAAAGGTTTCAAGTAAGACATTGCAAAACGAATGCTCAACAA
Unaligned ( gi|16 ): TAGAAGTTGCTATCAAACTAGTGTGTACGAGCATCCTAGCAATTGCCGAACTTATTTCTTTTTTTTTTTTTTTTT
Alignments
lowQualScore : 11 111111111 44444444444444444444444444444 333333333333333333333 222222222222 111 222222222 11 111111 4444444444444 1 1 1 11111 1 11 11 1 2222222 11 111 1 111 2 11 1 11111111111 1111 1 111111 1111 111 1111 2222 222 11 55555555 111 11 1 2222 1 444444 11 1111 11 3333333 2 11 1 111 11 1 1 111 333 2222222 1111 11 2 1 222222222222 1 11 111 11 111 33333 22222 22222 55555 11 1 11 11 11 2222 11 2222 1 1
lowQualScore : 55 5 5 55 4 4 1 777777777 2 999 4 66666666666666666666666666666 2 444444444444444444444 4 000000000000 4 66 88 000 5 5 5 5 888888888 0 33 1 88 1 8 88 000000 1 8 88 0000000000000 0 77 5 2 1 9999 1 44444 3 888 9 99 33 2 0000000 33 3 999 5 3 333 1 7 66 0 5 99999999999 55 5 8888 0 555555 6 6 99 6 4444 888 3 0000 9999 444 5 5 3 88 33333333 1 0 8 3 0 8 5 444 8 11 9 0 55 8 8 8 1 3333 0 99 8 66 333333 11 8 2222 8 8 11 0 4444444 0 4 5 11 8 0 5 8 6 8 444 0 8 8 11 0 3 6 8 8 0 0 0 1 444 1 777 8 88 8 8888888 7777 11 0 0 6 666666666666 0 11 8 99 8 5 8 0 3 444 1 8 1 5 8 11 0 0 8 444 8 5 3 1 11111 1 00000 0 8 8 00000 8 8 00000 66 8 8 11 0 8 11 8 11 8 8 11 1111 33 1111 0 0 2
lowQualScore : .. . . .. . . . ......... . ... . ............................. . ..................... . ............ . .. .. ... . . . . ......... . .. . .. . . .. ...... . . .. ............. . .. . . . .... . ..... . ... . .. .. . ....... .. . ... . . ... . . .. . . ........... .. . .... . ...... . . .. . .... ... . .... .... ... . . . .. ........ . . . . . . . ... . .. . . .. . . . . .... . .. . .. ...... .. . .... . . .. . ....... . . . .. . . . . . . ... . . . .. . . . . . . . . . ... . ... . .. . ....... .... .. . . . ............ . .. . .. . . . . . ... . . . . . .. . . . ... . . . . ..... . ..... . . . ..... . . ..... .. . . .. . . .. . .. . . .. .... .. .... . . .
lowQualScore : 33 0 0 55 4 4 9 888888888 6 444 4 88888888888888888888888888888 3 444444444444444444444 4 444444444444 4 99 00 000 7 7 7 7 999999999 2 22 0 44 6 0 22 444444 6 0 44 6666666666666 8 99 7 0 4 0000 0 33333 3 444 8 77 33 1 6666666 88 2 111 0 2 444 0 5 99 0 0 22222222222 22 0 9999 0 888888 7 7 88 7 2222 333 3 8888 0000 888 0 0 8 66 44444444 0 8 0 8 8 0 0 000 0 44 6 0 88 0 0 0 0 6666 0 88 0 44 222222 00 0 2222 0 0 00 8 6666666 8 0 0 00 0 8 0 0 0 0 666 8 0 0 22 8 2 0 0 0 8 8 0 0 000 0 000 0 88 0 0000000 0000 00 8 0 0 666666666666 0 00 0 00 0 0 0 8 2 000 0 0 0 6 0 00 8 8 0 000 0 0 2 0 00000 0 00000 8 0 0 00000 0 0 00000 44 0 0 00 6 0 00 0 00 0 0 00 2222 88 2222 0 0 0
consensus : TTTTTTTATAATTTTT-TATT-TTTTTCA-GACAT-CTGTA---------TNTTTCATT-CAAT--A-A-------ATACAN-AAT-----TAGCAAAACAT---------------A-AGTTCAAG-AATC--A----ATACCAGACTTTT-TTTT--AAGTGAAAGA---G-A-GAG-AGA-GAGAA--A------TAGAGCGAGTAGATAGAGTGTAAGCTGCTNA-GAACGATTAGGTCGTCAATCTGTNT-CACTGGCATGACAAACATTCCATTT-------AGTTTCTCAT--TTT-TGTAAAA-ATAATAATTTTTT-----GTGTTT-ATAAAANAGTTCTAAGGTAAGTATATTTGGCAAAACGAAGTGCTCAA-----CAATTTCTC--AGTACATC-TGTGTCTGTATATAAT-ATAATA-CT--TC-A-ACCAA-A--GG-AT-AGG-GT-ATG--TTT-GAAT-ACTT-CTT-GT-TTAT-TCAAG-GATAC----CTAA-A-ATAAATGATTTTTTTCA-TAAAATATTCTAGTGTCGTGAGGGTGTGAT-ATTTTTGTTC-ACAGGTGATATGGTTTCA-ACTCATTTTAGGAATG-CGTG---TGAA-CATTAATCACAGTTCCCGACA-G-TATATGT-CTANTCTG-GTTGTCTGACT-TCCTCTCTTTGACAAGAGG-----CA--TG-TT--G-G-AG-TTT--ACCTT--T--A-TTTTGGATAGAGAAAGAATGTGG--T-TTCCTAGAGGAT-TCGTA-TTA-TNAAGTTC-TGGT-TA-CTTGGAAACCGATTGC-AG-TTTACAAATTTTTAGTGTAGTT---TGATAGT-GGTAAT-TGTGTGGATATTTCT-TCATTCTA-TA------GTATCT----TT--CAACAAATTCACTCCATC-TAT-----TGTGCT-CCTGTGTGTC--ACTGAAG-AATTCTTATTT-CAC-ATTTCATGAA-AAGAATTTTGATTTCTTACA---CTAATGG-AACATTGTAACATTT-GTTTC--AATAAATAGGATT-TGGT---ACTTGT-TTAAAGTTACTTATTCTACAGTT-----TTTTATGCCCA-----TTGTTTTTAAT-GCA-TGAA-----T-ATAC-TG-----TATTTTCATGAAGTTAATTTTC-CA-TTGGGAT--TAATATAG-CCATAA--AAT-TCTCAAT--GC-GA-AAGA--AGTACCTATTTGT----TAATGAT--ATATTT----TATATATC-TGACAGCACTGT-CAAATAGTATTGTTTATTAAAAAATGCTTTACCACCAATATGGGATCATAGGGAGTTAAAAAGAGTACAGTGAGTCTGACAGATGACATCAGACTGTTAATGAGTTCTGCAGCTCAATCTCATGCCTAAAATACATCTACCAAAAGTTTGTTTTGTTAATGATTTCAAAGTCGTATTAGATGTATTCCAGTTCCACGATGTGATTTGAAAGTTCTAATTTAGGAATGAGATATTTGCTTCAATTTCTTTTGTTAAGTGAAGTTGCCTTATCCAAACTAATTTCAGAGAGGCAATTAAAGATTTGAAATGTCCCATTTGTAAAAGACACCTGCGAACTGATGTTTGAAATATCTAATTGTTGTTTTTAATAAAGT
Reference ( family-6306 ) : TTTTTTTATAATTTTT-TATT-TTTTTCA-GACAT-CTGTA---------TTTTTCATT-CAAT--A-A-------ATACAT-AAT-----TAGCAAAACAT---------------A-AGTTCAAG-AATC--A----ATACCAGACTTTT-TTTT--AAGTGAAAGA---G-A-GAG-AGA-GAGAA--A------TAGAGCGAGTAGNTAGAGTGTAAGCTGCTGA-GAACGATTAGGTCGTCAATCTGTCT-CACTGGTATGACAAATATTTCATTT-------AGTTCCTCAT--TTT-TGTAGAA-ATAATAATTGTTT-----GTGTTT-ATAAAAGAATTCTAAGGTAAGTATATTTGGCAAAACGAANTGCTC-A-----CAATTTCTC--AGTACATC-TGTG-CTGTATATAAT-ATNATAGCT--TC-A-ACCAA-A--GG-AT-AGG-GT-ATG--TTT-GAAT-ACTT-CTT-GT-TTAT-TCAAG-GATAC----CTAA-ANATAAANGATTTTTTTCA-TAAAA-A--CTAGT-TCGTGAGGGTGTGAT-ATTTTTGTTC-ACAG-T-ATANGGTTTCA-ACTCATTTTAGGAATG-CGTG---TGAA-CATTAATCGCAGTTCCCGACA-G-TATATGT-CTANTCTG-GTTGTCTNACT-TCCTCTCTTTGACAAGAGGC----CA--TG-TT--G-G-AG-TTT--ACCTT--T--A-TTTTGGATAGA-AAAGAATGTGG--T-TTCCTAGAGGAT-TC-TA-TTA-TTAAGTTC-TGGT-TA-CTTGGAAACC-ATTGC-AG-TTTACAAATTTTTAGTGTANTT---TGANAG--GGTAAT-TGTGTGGATATTTCT-TCATTCTA-TA------GTATCT----TT--CAACAAATTCACTCCATC-TAT-----TGTGCT-CCTGTGTGTC--ACTGAAG-AATTCTTATTT-NAC-ATTTCATGAA-AAGAATTTTGATTTCTTACA---CTAATGG-AACATTGTAACATTT-GTTTC--AATAAATAGGATT-TGGT---ACTTGT-TTAAAGTTACTTGTTCTACANTT-----TTTTATGNCCA-----TTGTTTTTAAT-GCA-TGAA-----T-ATAC-TG----CTATTCTCATGAAGTTAATTTTC-CA-TTGGGAT--TAATATAG-CCATAA--AAT-TCTCAAT--GC-GA-AAGA--AGTACCTATCTGT----TAATGAT--ATATTT----TATATATC-TGACAGCACTGT-CGAATAGTATTGTTTATTAAAAAATGCTTTACCACCAATATGGGATCATAGGGAGTTAAAAAGAGTACAGTGAGTCTGACAGATGACATCAGACTGTTAATGAGTTCTGCAGCTCAATCTCATGCCTAAAATACATCTACCAAAAGTTTGTTTTGTTAATGATTTCAAAGTCGTATTAGATGTATTCCAGTTCCACGATGTGATTTGAAAGTTCTAATTTAGGAATGAGATATTTGCTTCAATTTCTTTTGTTAAGTGAAGTTGCCTTATCCAAACTAATTTCAGAGAGGCAATTAAAGATTTGAAATGTCCCATTTGTAAAAGACACCTGCGAACTGATGTTTGAAATATCTAATTGTTGTTTTTAATAAAGT
gi|1 : TTTTTTTATAATTTTTGTATT-TTTTTCA-GACAT-CTGTA---------TTTTT--TT-GCAT--A-A-------AT-CAA-AAT-----ATGCAAAACAT---------------ACAGTTCAAACAATC--ATGCAATACACGACTTTT-TTTT--AAGTGAAAGA---G-A-GAG-AGAAGACAC--A------TAGAGCGA--AGATAGAGTGTAAGCTGCTGA-GAACGATTAGGTCGTCAATCTGTCT-CACTGGTATGACAAATATTTCATTT-------AGTTCCTCAT--TTT-TGTAGAA-ATAATAATTGTTT-----GTGTTT-ATAAAAGAATTCTAAGGTAAGTATAGTTTGCAAC-CGAA-TGCTC-AAATCGCATTTTCCT--AG-ACATCCTGTGTCTGTATATA-T-ATAATA-CTAATC-ATACCAA-A--GG-AT-AGG-GTGATGATTTT-GAAT-ACTT-CTTCGTGTTAT-TCAAGTGATACACGCTTAA-ACATAAATGATTTTTT-CA-TAAAA-A--CTAGT-TCGTGAGG-CGTTATGATTTTTGTTCCACA--T-ATATG-TTTCA-ACTCTCTTTAGGAAT--CGTG---TGAAACAT-AATC-CAGTTCCCG-CATG-TATATGTTCTATCATGCGTT-TCTATCT-T----TCTTTGACAAGACGG----CA--TG-TTCGG-G-AG-CTTTCACCTTGTT--AATTTTGGATAGGCAAAGAATGTGG--TGTTCCTAGAG-AT-TC-TAATTA-T-AAGTTC-TGGT-TAACTTG-AATCCGATTGCCAGCTTTACAAATTTTT--TGTAGTTAATTGATAGAAGGTAAT-TGTGTGGATATTTCT-TCATTCTAGTA-------TATCT----TTTCCAACAAATTCACTC-ATCCTAT-----TG--CT-CCTGTGTGTC--ACTGAAG-AATTCTTATTT-CAC-ATTTCATGAA-AAGAATTTTGATTTCTTACA---CTAATGG-AACATTGTAACATTT-GTTTC--AATAAATAGGATT-TGGT---ACTTGT-TTAAAGTTACTTATTCTACAGTT-----TTTTATGCCCA-----TTGTTTTTAAT-GCA-TGAA-----T-ATAC-TG-----TATTTTCATGAAGTTAATTTTC-CA-TTGGGAT--TAATATAG-CCATAA--AAT-TCTCAAT--GC-GA-AAGA--AGTACCTATTTGT----TAATGAT--ATATTT----TATATATC-TGACAGCACTGT-CAAATAGTATTGTTTATTAAAAAATGCTTTACCACCAATATGGGATCATAGGGAGTTAAAAAGAGTACAGTGAGTCTGACAGATGACATCAGACTGTTAATGAGTTCTGCAGCTCAATCTCATGCCTAAAATACATCTACCAAAAGTTTGTTTTGTTAATGATTTCAAAGTCGTATTAGATGTATTCCAGTTCCACGATGTGATTTGAAAGTTCTAATTTAGGAATGAGATATTTGCTTCAATTTCTTTTGTTAAGTGAAGTTGCCTTATCCAAACTAATTTCAGAGAGGCAATTAAAGATTTGAAATGTCCCATTTGTAAAAGACACCTGCGAACTGATGTTTGAAATATCTAATTGTTGTTTTTAATAAAG
gi|11 : tttttATATT-GGCAAAACGAATTGCTCAA-----CAATTTCTC--AGTACATC-T-TG-CTG--TATAAT-ATAATA-CT--TCAA-ACCAGTAGTGG-A--AGT-GT-ATG---TT-GAAT-A
gi|12 : TTTTTTTATTATTTCT-TATT-TTT--CA-AACATGTTGTA---------TATTTAATT-CAAT--A-ATACGAAAATACAT-GAT-------GCATAGAAT---------------G-A--TCAAG-AATC--A-----TAT-AGACTTTT-TT-----AGTGAAaaaatctgctgtatttacaacttatggtaaaacgtcatgacaaacgaaggtatgggcgtttctattcgcttaataatgagtttagacatatttatg
gi|13 : atttttAATTTGTC--AGTACATC-T-TG-CTATACA-AAT-ATAGTA-CT--TC-A-ACCAT-A--GGAAA-AGA-GT-AT---TTT-ATAT-GGTTAATT-TT-TTA--TCATG-AATAC----CCAA-A-ATGA---ATTTTT
gi|15 : CAT--TTT-TGTAAAACATAA--ATT-TTT-----GTGTTTCGTAAAAAGGTTTCAA-GTAAG-ACATT--GCAAAACGAA-TGCTCAA-----CAA
gi|2 : TTTTTTTATAATTTTT-TATT-TTTTTCA-GACGT-CTG-A---------TTTTTC-TT-CAAT--A-A-------ATACAT-AAT-----TAGCAAAACAT---------------A-AGTTCAAA-AATCTGA----ATACCAGACTTTT-TTTT--AAGTGAAACA---G-A-GAG-AGA-GAGAA--A------TAGAGCGAGTAGTNNNNNNNNNNNNNNNNNN-NNNNNNNNNNNNNNNNNNNNNNNNN-NNNNNNNNNNNNNNNNNNNNNNNNN-------NNNNNNNNNN--NNN-NNNNNNN-NNNNNNNNNNNNN-----NNNNNN-NNNNNNNNNNNCTAAGGTAAGTATATTTGGCAA--CGAAGTGCTC-A-----CAATTTTTCCTAGTAC-TC-TGTGTCTGTATATAATCGTTATAGCTG-TC-A-ACCAA-A--G--AT-AGG-GT-ATG--TTTTGAATGACTT-CTT-GT-TTAT-TCAAG-GATAC----CTAATAGATAAATGATTTTTTTCA-TAAAATATTCTAGTGTCGTGAGGGTGTGAT-ATTTTTGTTC-ACAGGTGATATGGTTTCA-ACTCATTTTAGGAATG-CGTG---TGAA-CATTAATCACAGTTCCCGACA-G-TATATGT-CTAGTCTG-GTTGTCTGATT-TCTTCTCTTTGACAAGAG------CA--TG-TT--G-G-AG-TTT--ACCTT-----A-TTTTGGATAGAGAAAGAATGTGG--T-TTCCTAGAGGAT-TCGTA-TTA-TGAAGTTC-TGGT-TA-CTTGGAAATC-ATTGC-AG-TTTACAAATTTTTAGTGTAGTT---TGATAGT-GGTAAT-TGTGTGGATATTTCT-TCATTCTA-TA------GTATCT----TT--CAACAAATTCACTC-ATC-TAT-----TG-GCT-CTTGTGTGTC--ACTGAAG-AATTCTTATTT-CAC-ATTTCATGAA-AAGAATTTTGATTTCTTACA---CTAATGG-AACATTGTAACATTT-GTTTC--AATAAATAGGATT-TGGT---ACTTGT-TTAAAGTTACTTATTCTACAGTT-----TTTTATGCCCA-----TTGTTTTTAAT-GCA-TGAA-----T-ATAC-TG-----TATTTTCATGAAGTTAATTTTC-CA-TTGGGAT--TAATATAG-CCATAA--AAT-TCTCAAT--GC-GA-AAGA--AGTACCTATTTGT----TAATGAT--ATATTT----TATATATC-TGACAGCACTGT-CAAATAGTATTGTTTATTAAAAAATGCTTTACCACCAATATGGGATCATAGGGAGTTAAAAAGAGTACAGTGAGTCTGACAGATGACATCAGACTGTTAATGAGTTCTGCAGCTCAATCTCATGCCTAAAATACATCTACCAAAAGTTTGTTTTGTTAATGATTTCAAAGTCGTATTAGATGTATTCCAGTTCCACGATGTGATTTGAAAGTTCTAATTTAGGAATGAGATATTTGCTTCAATTTCTTTTGTTAAGTGAAGTTGCCTTATCCAAACTAATTTCAGAGAGGCAATTAAAGATTTGAAATGTCCCATTTGTAAAAGACACCTGCGAACTGATGTTTGAAATATCTAATTGTTGTTTTTAATAAAGT
gi|3 : A-GACGT-CTG-A---------TTTTTC-TT-CAAT--A-A-------ATACAT-AAT-----TAGCAAAACAT---------------A-AGTTCAAA-AATCTGA----ATACCAGACTTTT-TTTT--AAGTGAAACA---G-A-GAG-AGA-GAGAA--A------TAGAGCGAGTAGTNNNNNNNNNNNNNNNNNN-NNNNNNNNNNNNNNNNNNNNNNNNN-NNNNNNNNNNNNNNNNNNNNNNNNN-------NNNNNNNNNN--NNN-NNNNNNN-NNNNNNNNNNNNN-----NNNNNN-NNNNNNNNNNNCTAAGGTAAGTATATTTGGCAA--CGAAGTGCTC-A-----CAATTTTTCCTAGTAC-TC-TGTGTCTGTATATAATCGTTATAGCTG-TC-A-ACCAA-A--G--AT-AGG-GT-ATG--TTTTGAATGACTT-CTT-GT-TTAT-TCAAG-GATAC----CTAATAGATAAATGATTTTTTTCA-TAAAATATTCTAGTGTCGTGAGGGTGTGAT-ATTTTTGTTC-ACAGGTGATATGGTTTCA-ACTCATTTTAGGAATG-CGTG---TGAA-CATTAATCACAGTTCCCGACA-G-TATATGT-CTAGTCTG-GTTGTCTGATT-TCTTCTCTTTGACAAGAG------CA--TG-TT--G-G-AG-TTT--ACCTT-----A-TTTTGGATAGAGAAAGAATGTGG--T-TTCCTAGAGGAT-TCGTA-TTA-TGAAGTTC-TGGT-TA-CTTGGAAATC-ATTGC-AG-TTTACAAATTTTTAGTGTAGTT---TGATAGT-GGTAAT-TGTGTGGATATTTCT-TCATTCTA-TA------GTATCT----TT--CAACAAATTCACTC-ATC-TAT-----TG-GCT-CTTGTGTGTC--ACTGAAG-AATTCTTATTT-CAC-ATTTCATGAA-AAGAATTTTGATTTCTTACA---CTAATGG-AACATTGTAACATTT-GTTTC--AATAAATAGGATT-TGGT---ACTTGT-TTAAAGTTACTTATTCTACAGTT-----TTTTATGCCCA-----TTGTTTTTAAT-GCA-TGAA-----T-ATAC-TG-----TATTTTCATGAAGTTAATTTTC-CA-TTGGGAT--TAATATAG-CCATAA--AAT-TCTCAAT--GC-GA-AAGA--AGTACCTATTTGT----TAATGAT--ATATTT----TATATATC-TGACAGCACTGT-CAAATAGTATTGTTTATTAAAAAATGCTTTACCACCAATATGGGATCATAGGGAGTTAAAAAGAGTACAGTGAGTCTGACAGATGACATCAGACTGTTAATGAGTTCTGCAGCTCAATCTCATGCCTAAAATACATCTACCAAAAGTTTGTTTTGTTAATGATTTCAAAGTCGTATTAGATGTATTCCAGTTCCACGATGTGATTTGAAAGTTCTAATTTAGGAATGAGATATTTGCTTCAATTTCTTTTGTTAAGTGAAGTTGCCTTATCCAAACTAATTTCAGAGAGGCAATTAAAGATTTGAAATGTCCCATTTGTAAAAGACACCTGCGAACTGATGTTTGAAATATCTAATTGTTGTTTTTAATAAAGT
gi|4 : TTTTT-TAAT-TTTT-CA-AGCAT-CTGTA---------TATTCAATT-CAATTCACA-------ATACAA-AATATGCATAGCAAAA-----------------------TCAAG-TATC--A----ATAC-AGACTT-T-TTTT--AA--GAAAGA---G-A-GAGAAGA-AAGAAGGA------TAAAGc
gi|4 : ttcttcttc-----CAATTTCTC--AGTACATC-T-TG-CTGTATATA----TAATA-CT--TC-A-ACCAA-A--GG-ATAAGA-GT-AT---TTT-GAAT-AC-C-CTT-GT-TTATCTCAAG-GATAC----CTAA-AT-TAAAAGATTTTCTTTAGTAAAA-A--CAAGT----TGAAGCTTTG-T--TTTTTGTTC-CT---C-ATAAAG-TTCACACTCA-TTTAGGAATG-CTTGAATTCAA-TATT--TCGCA-TTCC--ACA-GTTATATTT-CTATT----GTT-TCTTACTGTACTCT-TTTGACAAAAGGCTACACA--TACTT--G-GTAGATTT--ACA-T--T--A-TT-------------GAACTTAGTTT-TTCCT--AGGATATC-TA-TTA-ATAATTTCATTGTATA--TTGAAAACCGATTGC-AG-TTTACAATTTTATAGT-TATTC---TGAAA---GGTAAT-T-TGTGGATATTTTTGCCATTCTA-TATTACTCGTAT-T----TC--CAAATAACTCACTCCAT--TATACCTGTATGTTACCTGT-TGTTCGACTGAAGAAATTCTTATCTAAACGATTGCATCAATAAG--CTGGGATTTTTTACATCTCTGAAGACAATAATA-AACATTTGGTTTCTTAATA---AGGATTGGGGTACAACATGTCTTAAAGTTAACTGTTTTA-ACTTTTATCTTCTATTACCAACTCCTTTTTTTTATT-GCATTGAATGAGGT-ATAC-CGATATATATTCTC-----------TTCC-CA-TT--GATCATAA-ATAGCCCATAAGCAATCCCTCGATAGGCTGA-AAAAAGAGTGCATCTCCGTGTTATAATGATTAATATGTATGATATAGACCTTGACACCACTATACGTATAATATaactatgatgtgtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncaatttctcagtacatcttgctgtatatataatacttcaaccaaaggataagagtattttgaatacccttgtttatctcaaggatacctaaattaaaagattttctttagtaaaaacaagttgaagctttgttttttgttcctcataaagttcacactcatttaggaatgcttgaattcaatatttcgcattccacagttatatttctattgtttcttactgtactcttttgacaaaaggctacacatacttggtagatttacattattgaacttagtttttcctaggatatctattaataatttcattgtatattgaaaaccgattgcagtttacaattttatagttattctgaaaggtaatttgtggatatttttgccattctatattactcgtatttccaaataactcactccattatacctgtatgttacctgttgttcgactgaagaaattcttatctaaacgattgcatcaataagctgggattttttacatctctgaagacaataataaacatttggtttcttaataaggattggggtacaacatgtcttaaagttaactgttttaacttttatcttctattaccaactccttttttttattgcattgaatgaggtataccgatatatattctcttcccattgatcataaatagcccataagcaatccctcgataggctgaaaaaagagtgcatctccgtgttataatgattaatatgtatgatatagaccttgacaccactatacgtataatat
gi|5 : ttcttcttcttttttaatttttcaagcatctgtatattcaattcaattcacaatacaaaatatgcatagcaaaatcaagtatcaatacagactttttttaagaaagagagagaagaaagaaggataaagaactatgatgtgtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTCAT--TTT-TGTA-AA-ATA-TGATTTTTTTTTTGGTGTTTCATAAGATA--TCTAAG-TAAG-ATATT--GCAAAATGA-GTGCTA-A-----TAATTTCTC--AGTTCATC--ATG-CTGTATATG-T-ATAGTA-TT--TC-A-ACCAT-A--GG-AA-AAGAGT-AT---TTT-CAAT-------------------CATG-AATAC----CCAA-A-ATAAAAGATTTTGTG-G-TAAAA-A--CCAAT-C---GAAGGT-TGGT--TTTATCTTC-A-------TAAAGTTCAA-ACTCATCT-ACGAATGAC------TGAA-CAA-AATCACA-TTCCC-ACA-G-TAACTGT-TCAAT------TGTTT--CC-TCCTCCCTGTGACAAAAGGTA---CAGATC-TT--AAG-AG-TTT--ATCTT--TTAG-TTTTGAACAGA-AAAGAAT-TAG--T-TGC-TAAA--AT-TC-TA-TTAATTA--TTC-TA---TA-TT--GAAACC-ATTGG-AG-TTT-CCAATTTTTAGT-TATTT---TGAAA---GGTAAGATGT-TGAAAATTTC---CATTCTC-TA------TTATCTATAGCT--AAACAA--TCGCTCCATCGTAT-----TGTG---CCTGC-CGTC--ATCGCAT-TGTTTTTGTTT-AAA-ATCTCGT-AA-AAGAAATTTGGCTT-----------------------------TTT-ATTCT--AATAAGT-GGATT-TGGT---AATT-T-TCAAAGTTA-TTGCT-TGCACCTGG---CTTTATAATCA-----AAG-TCCTAATAGCA-TGAA-----TAATACTTGC---CCAATCTGA-GAATTTAATCTTCACACTTGG--T--TAA-GTAG-CACTAA--AGT-TCTCATA--GC-TACAAAA--CGTA-CTATCT
gi|6 : cgTTTGTTGATAATCTTT-TCTTATTTTTCA-GACAT-CTGTA---------TTTCTCATT-TCAT---------------CATGAAT-----T-GCAAAACATTGATCGCACGAAGCAA-AGTTAAAA-AATC--C----A-ATTAGACTTTT-TTTTTAAAAAGAAAGAATGG-ATGAG-AAA-G-GAA--AGATGTGTAGA--GAG-ACATAGAGTGTAAGttctt
gi|6 : tttggtGCATATT-GGCAAAACGAATTGCTCAA-----CAATTTCTC--AGTACATC-T-TG-CTG--TATAAT-ATAATA-CT--TCAA-ACCAGTAGTGG-A--AGT-GT-ATG---TT-GAAT-tcttattnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncatctatttcagatccgcatattggcaaaacgaattgctcaacaatttctcagtacatcttgctgtataatataatacttcaaaccagtagtggaagtgtatgttgaat
gi|7 : tttggttttgttgataatcttttcttatttttcagacatctgtatttctcatttcatcatgaattgcaaaacattgatcgcacgaagcaaagttaaaaaatccaattagactttttttttaaaaagaaagaatggatgagaaaggaaagatgtgtagagagacatagagtgtaagtcttattnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncatctatttcagatccTTTTTTTAT---TCTT-TATT-TTT--CAAGGCAT-TAGTA---------TATT-AATT-CA-C--A-A-------A--CAA-AAT-----ATGCATAACAA---------------A-A--TCAAG-AATC--A----ATA-CAGACTTTT-TT
gi|8 : accacaaaattaaggggcaacaattaTTTTTTTATA-TTTTT-TATT-TTT--CA-AGCAT-CTGTAAATAGTTTGTTTTACATTACAAT--A-A----------------------TAGCATAACA----------------A-ATATCAAG-CATC--A----AT--CAGACTTTTATTTT--AA--GAAAGA---GAA-GAG-ATA-AAGAA--AGAAT--TAGAGAGAG--AATAGAGTGTGAG--GCTTATGAA--ATTAGGT--TC--TCTGTGTCCACTGGCAT--CAAACATTCT-------------TTTCTTATAGTTTGTGTAAAAGATAAT--TTTTTT-----GTGTTT-aaagaattnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnacaa
gi|9 : aagggaaaaaaatgatttcggtccttaattggcgacgaatttttttttTTTTTTCATGATTCTT-TATT-TTTTT-A-AACAT-CTGTA---------TATTTCA---CAAC--A-----------AC-----------------AACAT---------------A-AGGTCCAA-A--C--A----AT-CGAGA---TT-TTTT--ATGAGAAAGA---G-A-GAG-AGN-NNNNN--N------NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-NNNNNNNNNNNNNNNNNNNNNNNNN-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAAATTTGCCAT--TTT-TGTA-AA-AT-ATAATTTTTT-----TTGTca
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|10 ): TTCATCAANGGTTTCAGTTTCCTTTTTTACAAAAAGTACATAAATCTGTATCTTTGGTTTTATGCAAAAAGAAGTTTGTTGAGAGAATAATATGATTTATTTGAAACTGAAACCATTGGAATTTTGTATTCTTAGTAAGCTTGAATGGGAGGGCAAATATATTTTCCCATTCATCATCACTCAGATCGA
Unaligned ( gi|14 ): TTACAAGAAATAGTTGTAAAAGGTGGCATTCCCATAAACGGTGTTCCTTTGGCAAAAGTTGCAATATTAAGAGTCTATACTTTTTAATTTTGAACAGGAA
Unaligned ( gi|16 ): TAGAAGTTGCTATCAAACTAGTGTGTACGAGCATCCTAGCAATTGCCGAACTTATTTCTTTTTTTTTTTTTTTTT
Alignments
lowQualScore : 11 1111111 1111 4444444444444444444444444444444 111111 222222222222 111 1 222222222 11 111111 4444444444444 1111 1 11 11 1 11111 11 222222 111 1 11 1 11111111111 1111 1 111111 1111 2222 1111 3333 22 11 33333333 111 11 1 2222 1 333333333333 1111 11 3333333 1 11 1 111 11 2 1 111 11 2222222 1111 11 1 111 22222222 1 11 111 11 111 33333 22222 22222 33333 11 1 11 11 11 2222 11 2222 1 1
lowQualScore : 55 5 5 55 4 4 1 4444444 1 4444 8 66 66 4444444444444444444444444444444 888 222222 4 000000000000 4 66 6 000 1 5 5 888888888 0 33 1 88 1 8 88 000000 1 8 88 0000000000000 77 5 0 6666 55 77 3 1 7 9 99 33 1 55555 33 3 111111 3 333 0 66 0 5 99999999999 55 5 8888 0 555555 6 6 99 6 4444 1111 0000 7777 00 5 5 3 88 55555555 1 0 8 3 0 8 5 444 8 11 3 0 55 8 8 8 1 3333 0 99 8 66 8 111111111111 8 2222 8 8 11 0 4444444 0 0 5 11 8 0 5 8 5 333 0 8 8 11 0 3 0 8 8 6 0 0 444 1 88 8 88 8 8888888 7777 11 0 0 666 99999999 88 0 11 8 8 8 5 8 0 3 444 1 8 1 5 8 11 0 0 8 444 8 5 3 11111 00000 0 8 8 00000 8 8 11111 66 8 8 11 0 8 11 8 11 8 8 11 1111 33 1111 0 0
lowQualScore : .. . . .. . . . ....... . .... . .. .. ............................... ... ...... . ............ . .. . ... . . . ......... . .. . .. . . .. ...... . . .. ............. .. . . .... .. .. . . . . .. .. . ..... .. . ...... . ... . .. . . ........... .. . .... . ...... . . .. . .... .... .... .... .. . . . .. ........ . . . . . . . ... . .. . . .. . . . . .... . .. . .. . ............ . .... . . .. . ....... . . . .. . . . . . ... . . . .. . . . . . . . . ... . .. . .. . ....... .... .. . . ... ........ .. . .. . . . . . . . ... . . . . . .. . . . ... . . . ..... ..... . . . ..... . . ..... .. . . .. . . .. . .. . . .. .... .. .... . .
lowQualScore : 33 0 0 55 4 4 9 4444444 0 6666 9 11 11 4444444444444444444444444444444 444 111111 4 444444444444 4 99 6 000 4 7 7 999999999 2 22 3 44 0 0 22 444444 0 0 44 6666666666666 99 7 9 0000 66 99 3 0 6 8 77 33 4 66666 88 2 888888 2 444 0 99 0 0 22222222222 22 0 9999 0 888888 7 7 88 7 2222 0000 8888 2222 66 0 0 8 66 22222222 4 8 0 8 8 0 0 000 0 44 8 0 88 0 0 0 0 6666 0 22 0 44 0 222222222222 0 2222 0 0 00 8 6666666 8 0 0 00 0 8 0 0 0 000 8 0 0 22 8 2 0 0 0 0 8 0 000 4 88 0 88 0 0000000 0000 00 8 0 000 66666666 88 0 00 0 0 0 0 0 8 2 000 0 0 0 6 0 00 8 8 0 000 0 0 2 00000 00000 8 0 0 00000 0 0 00000 44 0 0 00 6 0 00 0 00 0 0 00 2222 88 2222 0 0
consensus : TTTTTTTATAATTTTT-TATT-TTTTTCA-GACAT-CTGTA-------TNTTT--CATT-CA--AT--A-A-------AT-ACANAA--T-----TA---GCA--AAACATA-AGTTCAAG-AATC--A----ATACCAGACTTTT-TTTT--AAGTGAAAGA---GA-GAG-AGA-GAGAA--A------TAGAGCGAGTAGATAGAGTGTAAGCTGCTNA-GAACGATTAGGTCGTCAATCTGTNT-CACTGGCATGACAAACATTCCATTT-------AGTTTCTCAT--TTT-TGTAAAA-ATAATAATTTTTT--GTGTTT-ATAAAANAGTTCTAAGGTAAGTATATTTGGCAAAACGAAGTGCTCAA----CAATTTCTC--AGTACATC-TGTGTCTGTATATAAT-ATAATA-CT--TC-A-ACCAA-A--GG-AT-AGG-GT-ATG--TTT-GAAT-ACTT-CTT-GT-TTAT-TCAAG-GATAC----CTAA--A-ATAAATGATTTTTTTCA-TAAAATATTCTAGTGTCGTGAGGGTGTGAT-ATTTTTGTTC-ACAGGTGATATGGTTTCA-ACTCATTTTAGGAATG-CGTG---TGAA-CATTAATCACAGTTCCCGACA-G-TATATGT-CTANTCTG-GTTGTCTGACT-TCCTCTCTTTGACAAGA-GG-----CA----TG-TT--G-G-AG-TTT--ACCTT--T--A-TTTTGGATAGAGAAAGAATGTGG--T-TTCCTAGAGGAT-TCGTATTA-TNAAGTTC-TGGT-TA-CTTGGAAACCGATTGC-AG-TTTACAAATTTTTAGTGTAGTT---TGATAGT-GGTAAT-TGTGTGGATATTTCT-TCATTCTA-TA------GTATCT----TT--CAACAAATTCACTCCAT-C-TAT-----TGTGCT-CCTGTGTGTC--ACTGAAG-AATTCTTATTT-CAC-ATTTCATGAA-AAGAATTTTGATTTCTTACA---CTAATGG-AACATTGTAACATTT-GTTTC--AATAAATAGGATT-TGGT---ACTTGT-TTAAAGTTACTTATTCTACAGTT-----TTTTATGCCCA-----TTGTTTTTAAT-GCA-TGAA-----T-ATAC-TG-----TATTTTCATGAAGTTAATTTTC-CA-TTGGGAT--TAATATAG-CCATAA--AAT-TCTCAAT--GC-GA-AAGA--AGTACCTATTTGT----TAATGAT--ATATTT----TATATATC-TGACAGCACTGT-CAAATAGTATTGTTTATTAAAAAATGCTTTACCACCAATATGGGATCATAGGGAGTTAAAAAGAGTACAGTGAGTCTGACAGATGACATCAGACTGTTAATGAGTTCTGCAGCTCAATCTCATGCCTAAAATACATCTACCAAAAGTTTGTTTTGTTAATGATTTCAAAGTCGTATTAGATGTATTCCAGTTCCACGATGTGATTTGAAAGTTCTAATTTAGGAATGAGATATTTGCTTCAATTTCTTTTGTTAAGTGAAGTTGCCTTATCCAAACTAATTTCAGAGAGGCAATTAAAGATTTGAAATGTCCCATTTGTAAAAGACACCTGCGAACTGATGTTTGAAATATCTAATTGTTGTTTTTAATAAAGT
Reference ( family-6306 ) : TTTTTTTATAATTTTT-TATT-TTTTTCA-GACAT-CTGTA-------TNTTT--CATT-CA--AT--A-A-------AT-ACANAA--T-----TA---GCA--AAACATA-AGTTCAAG-AATC--A----ATACCAGACTTTT-TTTT--AAGTGAAAGA---GA-GAG-AGA-GAGAA--A------TAGAGCGAGTAGATAGAGTGTAAGCTGCTNA-GAACGATTAGGTCGTCAATCTGTNT-CACTGGCATGACAAACATTCCATTT-------AGTTTCTCAT--TTT-TGTAAAA-ATAATAATTTTTT--GTGTTT-ATAAAANAGTTCTAAGGTAAGTATATTTGGCAAAACGAAGTGCTCAA----CAATTTCTC--AGTACATC-TGTGTCTGTATATAAT-ATAATA-CT--TC-A-ACCAA-A--GG-AT-AGG-GT-ATG--TTT-GAAT-ACTT-CTT-GT-TTAT-TCAAG-GATAC----CTAA--A-ATAAATGATTTTTTTCA-TAAAATATTCTAGTGTCGTGAGGGTGTGAT-ATTTTTGTTC-ACAGGTGATATGGTTTCA-ACTCATTTTAGGAATG-CGTG---TGAA-CATTAATCACAGTTCCCGACA-G-TATATGT-CTANTCTG-GTTGTCTGACT-TCCTCTCTTTGACAAGA-GG-----CA----TG-TT--G-G-AG-TTT--ACCTT--T--A-TTTTGGATAGAGAAAGAATGTGG--T-TTCCTAGAGGAT-TCGTATTA-TNAAGTTC-TGGT-TA-CTTGGAAACCGATTGC-AG-TTTACAAATTTTTAGTGTAGTT---TGATAGT-GGTAAT-TGTGTGGATATTTCT-TCATTCTA-TA------GTATCT----TT--CAACAAATTCACTCCAT-C-TAT-----TGTGCT-CCTGTGTGTC--ACTGAAG-AATTCTTATTT-CAC-ATTTCATGAA-AAGAATTTTGATTTCTTACA---CTAATGG-AACATTGTAACATTT-GTTTC--AATAAATAGGATT-TGGT---ACTTGT-TTAAAGTTACTTATTCTACAGTT-----TTTTATGCCCA-----TTGTTTTTAAT-GCA-TGAA-----T-ATAC-TG-----TATTTTCATGAAGTTAATTTTC-CA-TTGGGAT--TAATATAG-CCATAA--AAT-TCTCAAT--GC-GA-AAGA--AGTACCTATTTGT----TAATGAT--ATATTT----TATATATC-TGACAGCACTGT-CAAATAGTATTGTTTATTAAAAAATGCTTTACCACCAATATGGGATCATAGGGAGTTAAAAAGAGTACAGTGAGTCTGACAGATGACATCAGACTGTTAATGAGTTCTGCAGCTCAATCTCATGCCTAAAATACATCTACCAAAAGTTTGTTTTGTTAATGATTTCAAAGTCGTATTAGATGTATTCCAGTTCCACGATGTGATTTGAAAGTTCTAATTTAGGAATGAGATATTTGCTTCAATTTCTTTTGTTAAGTGAAGTTGCCTTATCCAAACTAATTTCAGAGAGGCAATTAAAGATTTGAAATGTCCCATTTGTAAAAGACACCTGCGAACTGATGTTTGAAATATCTAATTGTTGTTTTTAATAAAGT
gi|1 : TTTTTTTATAATTTTTGTATT-TTTTTCA-GACAT-CTGTA-------TTTTT----TT-GC--AT--A-A-------AT--CAAAA--T-----AT---GCA--AAACATACAGTTCAAACAATC--ATGCAATACACGACTTTT-TTTT--AAGTGAAAGA---GA-GAG-AGAAGACAC--A------TAGAGCGA--AGATAGAGTGTAAGCTGCTGA-GAACGATTAGGTCGTCAATCTGTCT-CACTGGTATGACAAATATTTCATTT-------AGTTCCTCAT--TTT-TGTAGAA-ATAATAATTGTTT--GTGTTT-ATAAAAGAATTCTAAGGTAAGTATAGTTTGCAAC-CGAA-TGCTCAAATCGCATTTTCCT--AG-ACATCCTGTGTCTGTATATA-T-ATAATA-CTAATC-ATACCAA-A--GG-AT-AGG-GTGATGATTTT-GAAT-ACTT-CTTCGTGTTAT-TCAAGTGATACACGCTTAA--ACATAAATGATTTTTT-CA-TAAAA-A--CTAGT-TCGTGAGG-CGTTATGATTTTTGTTCCACA--T-ATATG-TTTCA-ACTCTCTTTAGGAAT--CGTG---TGAAACAT-AATC-CAGTTCCCG-CATG-TATATGTTCTATCATGCGTT-TCTATCT-T----TCTTTGACAAGACGG-----CA----TG-TTCGG-G-AG-CTTTCACCTTGTT--AATTTTGGATAGGCAAAGAATGTGG--TGTTCCTAGAG-AT-TCTAATTA-T-AAGTTC-TGGT-TAACTTG-AATCCGATTGCCAGCTTTACAAATTTTT--TGTAGTTAATTGATAGAAGGTAAT-TGTGTGGATATTTCT-TCATTCTAGTA-------TATCT----TTTCCAACAAATTCACT-CATCC-TAT-------TGCT-CCTGTGTGTC--ACTGAAG-AATTCTTATTT-CAC-ATTTCATGAA-AAGAATTTTGATTTCTTACA---CTAATGG-AACATTGTAACATTT-GTTTC--AATAAATAGGATT-TGGT---ACTTGT-TTAAAGTTACTTATTCTACAGTT-----TTTTATGCCCA-----TTGTTTTTAAT-GCA-TGAA-----T-ATAC-TG-----TATTTTCATGAAGTTAATTTTC-CA-TTGGGAT--TAATATAG-CCATAA--AAT-TCTCAAT--GC-GA-AAGA--AGTACCTATTTGT----TAATGAT--ATATTT----TATATATC-TGACAGCACTGT-CAAATAGTATTGTTTATTAAAAAATGCTTTACCACCAATATGGGATCATAGGGAGTTAAAAAGAGTACAGTGAGTCTGACAGATGACATCAGACTGTTAATGAGTTCTGCAGCTCAATCTCATGCCTAAAATACATCTACCAAAAGTTTGTTTTGTTAATGATTTCAAAGTCGTATTAGATGTATTCCAGTTCCACGATGTGATTTGAAAGTTCTAATTTAGGAATGAGATATTTGCTTCAATTTCTTTTGTTAAGTGAAGTTGCCTTATCCAAACTAATTTCAGAGAGGCAATTAAAGATTTGAAATGTCCCATTTGTAAAAGACACCTGCGAACTGATGTTTGAAATATCTAATTGTTGTTTTTAATAAAG
gi|11 : tttttATATT-GGCAAAACGAATTGCTCAA----CAATTTCTC--AGTACATC-T-TG-CTG--TATAAT-ATAATA-CT--TCAA-ACCAGTAGTGG-A--AGT-GT-ATG---TT-GAAT-A
gi|12 : TTTTTTTATTATTTCT-TATT-TTT--CA-AACATGTTGTA-------TATTT--AATT-CA--AT--A-ATACGAAAAT-ACATGA--T----------GCA--TAGAATG-A--TCAAG-AATC--A-----TAT-AGACTTTT-TT-----AGTGAAaaaatctgctgtatttacaacttatggtaaaacgtcatgacaaacgaaggtatgggcgtttctattcgcttaataatgagtttagacatatttatg
gi|13 : atttttAATTTGTC--AGTACATC-T-TG-CTATACA-AAT-ATAGTA-CT--TC-A-ACCAT-A--GGAAA-AGA-GT-AT---TTT-ATAT-GGTTAATT-TT-TTA--TCATG-AATAC----CCAA--A-ATGAAT--TTTT
gi|15 : CAT--TTT-TGTAAAA-C--ATAAATTTTT--GTGTTTCGTAAAAAGGTTTCAA-GTAAG-ACATT--GCAAAACGAA-TGCTCAA----CAA
gi|2 : TTTTTTTATAATTTTT-TATT-TTTTTCA-GACGT-CTG-A-------TTTTT--C-TT-CA--AT--A-A-------AT-ACATAA--T-----TA---GCA--AAACATA-AGTTCAAA-AATCTGA----ATACCAGACTTTT-TTTT--AAGTGAAACA---GA-GAG-AGA-GAGAA--A------TAGAGCGAGTAGTNNNNNNNNNNNNNNNNNN-NNNNNNNNNNNNNNNNNNNNNNNNN-NNNNNNNNNNNNNNNNNNNNNNNNN-------NNNNNNNNNN--NNN-NNNNNNN-NNNNNNNNNNNNN--NNNNNN-NNNNNNNNNNNCTAAGGTAAGTATATTTGGCAA--CGAAGTGCTCA-----CAATTTTTCCTAGTAC-TC-TGTGTCTGTATATAATCGTTATAGCTG-TC-A-ACCAA-A--G--AT-AGG-GT-ATG--TTTTGAATGACTT-CTT-GT-TTAT-TCAAG-GATAC----CTAATAG-ATAAATGATTTTTTTCA-TAAAATATTCTAGTGTCGTGAGGGTGTGAT-ATTTTTGTTC-ACAGGTGATATGGTTTCA-ACTCATTTTAGGAATG-CGTG---TGAA-CATTAATCACAGTTCCCGACA-G-TATATGT-CTAGTCTG-GTTGTCTGATT-TCTTCTCTTTGACAAGA-G------CA----TG-TT--G-G-AG-TTT--ACCTT-----A-TTTTGGATAGAGAAAGAATGTGG--T-TTCCTAGAGGAT-TCGTATTA-TGAAGTTC-TGGT-TA-CTTGGAAATC-ATTGC-AG-TTTACAAATTTTTAGTGTAGTT---TGATAGT-GGTAAT-TGTGTGGATATTTCT-TCATTCTA-TA------GTATCT----TT--CAACAAATTCACTC-AT-C-TAT-----TG-GCT-CTTGTGTGTC--ACTGAAG-AATTCTTATTT-CAC-ATTTCATGAA-AAGAATTTTGATTTCTTACA---CTAATGG-AACATTGTAACATTT-GTTTC--AATAAATAGGATT-TGGT---ACTTGT-TTAAAGTTACTTATTCTACAGTT-----TTTTATGCCCA-----TTGTTTTTAAT-GCA-TGAA-----T-ATAC-TG-----TATTTTCATGAAGTTAATTTTC-CA-TTGGGAT--TAATATAG-CCATAA--AAT-TCTCAAT--GC-GA-AAGA--AGTACCTATTTGT----TAATGAT--ATATTT----TATATATC-TGACAGCACTGT-CAAATAGTATTGTTTATTAAAAAATGCTTTACCACCAATATGGGATCATAGGGAGTTAAAAAGAGTACAGTGAGTCTGACAGATGACATCAGACTGTTAATGAGTTCTGCAGCTCAATCTCATGCCTAAAATACATCTACCAAAAGTTTGTTTTGTTAATGATTTCAAAGTCGTATTAGATGTATTCCAGTTCCACGATGTGATTTGAAAGTTCTAATTTAGGAATGAGATATTTGCTTCAATTTCTTTTGTTAAGTGAAGTTGCCTTATCCAAACTAATTTCAGAGAGGCAATTAAAGATTTGAAATGTCCCATTTGTAAAAGACACCTGCGAACTGATGTTTGAAATATCTAATTGTTGTTTTTAATAAAGT
gi|3 : A-GACGT-CTG-A-------TTTTT--C-TT-CA--AT--A-A-------AT-ACATAA--T-----TA---GCA--AAACATA-AGTTCAAA-AATCTGA----ATACCAGACTTTT-TTTT--AAGTGAAACA---GA-GAG-AGA-GAGAA--A------TAGAGCGAGTAGTNNNNNNNNNNNNNNNNNN-NNNNNNNNNNNNNNNNNNNNNNNNN-NNNNNNNNNNNNNNNNNNNNNNNNN-------NNNNNNNNNN--NNN-NNNNNNN-NNNNNNNNNNNNN--NNNNNN-NNNNNNNNNNNCTAAGGTAAGTATATTTGGCAA--CGAAGTGCTCA-----CAATTTTTCCTAGTAC-TC-TGTGTCTGTATATAATCGTTATAGCTG-TC-A-ACCAA-A--G--AT-AGG-GT-ATG--TTTTGAATGACTT-CTT-GT-TTAT-TCAAG-GATAC----CTAATAG-ATAAATGATTTTTTTCA-TAAAATATTCTAGTGTCGTGAGGGTGTGAT-ATTTTTGTTC-ACAGGTGATATGGTTTCA-ACTCATTTTAGGAATG-CGTG---TGAA-CATTAATCACAGTTCCCGACA-G-TATATGT-CTAGTCTG-GTTGTCTGATT-TCTTCTCTTTGACAAGA-G------CA----TG-TT--G-G-AG-TTT--ACCTT-----A-TTTTGGATAGAGAAAGAATGTGG--T-TTCCTAGAGGAT-TCGTATTA-TGAAGTTC-TGGT-TA-CTTGGAAATC-ATTGC-AG-TTTACAAATTTTTAGTGTAGTT---TGATAGT-GGTAAT-TGTGTGGATATTTCT-TCATTCTA-TA------GTATCT----TT--CAACAAATTCACTC-AT-C-TAT-----TG-GCT-CTTGTGTGTC--ACTGAAG-AATTCTTATTT-CAC-ATTTCATGAA-AAGAATTTTGATTTCTTACA---CTAATGG-AACATTGTAACATTT-GTTTC--AATAAATAGGATT-TGGT---ACTTGT-TTAAAGTTACTTATTCTACAGTT-----TTTTATGCCCA-----TTGTTTTTAAT-GCA-TGAA-----T-ATAC-TG-----TATTTTCATGAAGTTAATTTTC-CA-TTGGGAT--TAATATAG-CCATAA--AAT-TCTCAAT--GC-GA-AAGA--AGTACCTATTTGT----TAATGAT--ATATTT----TATATATC-TGACAGCACTGT-CAAATAGTATTGTTTATTAAAAAATGCTTTACCACCAATATGGGATCATAGGGAGTTAAAAAGAGTACAGTGAGTCTGACAGATGACATCAGACTGTTAATGAGTTCTGCAGCTCAATCTCATGCCTAAAATACATCTACCAAAAGTTTGTTTTGTTAATGATTTCAAAGTCGTATTAGATGTATTCCAGTTCCACGATGTGATTTGAAAGTTCTAATTTAGGAATGAGATATTTGCTTCAATTTCTTTTGTTAAGTGAAGTTGCCTTATCCAAACTAATTTCAGAGAGGCAATTAAAGATTTGAAATGTCCCATTTGTAAAAGACACCTGCGAACTGATGTTTGAAATATCTAATTGTTGTTTTTAATAAAGT
gi|4 : TTTTT-TAAT-TTTT-CA-AGCAT-CTGTA-------TATTC--AATT-CA--ATTCACA-------AT-ACAAAA--TATGCATA---GCA--AAA--------TCAAG-TATC--A----ATAC-AGACTT-T-TTTT--AA--GAAAGA---GA-GAGAAGA-AAGAAGGA------TAAAGc
gi|4 : ttcttcttc----CAATTTCTC--AGTACATC-T-TG-CTGTATATA----TAATA-CT--TC-A-ACCAA-A--GG-ATAAGA-GT-AT---TTT-GAAT-AC-C-CTT-GT-TTATCTCAAG-GATAC----CTAA--A-TTAAAAGATTTTCTTTAGTAAAA-A--CAAGT----TGAAGCTTTG-T--TTTTTGTTC--C---TCATAAAG-TTCACACTCA-TTTAGGAATG-CTTGAATTCAA-TATT--TCGCA-TTCC--ACA-GTTATATTT-CTATT----GTT-TCTTACTGTACTCT-TTTGACAAAA-GGCTACACA----TACTT--G-GTAGATTT--ACA-T--T--A-TT-------------GAACTTAGTTT-TTCCT--AGGATATC-TATTA-ATAATTTCATTGTATA--TTGAAAACCGATTGC-AG-TTTACAATTTTATAGT-TATTC---TGAAA---GGTAAT-T-TGTGGATATTTTTGCCATTCTA-TATTACTCGTAT-T----TC--CAAATAACTCACTCCAT---TATACCTGTATGTTACCTGT-TGTTCGACTGAAGAAATTCTTATCTAAACGATTGCATCAATAAG--CTGGGATTTTTTACATCTCTGAAGACAATAATA-AACATTTGGTTTCTTAATA---AGGATTGGGGTACAACATGTCTTAAAGTTAACTGTTTTA-ACTTTTATCTTCTATTACCAACTCCTTTTTTTTATT-GCATTGAATGAGGT-ATAC-CGATATATATTCTC-----------TTCC-CA-TT--GATCATAA-ATAGCCCATAAGCAATCCCTCGATAGGCTGA-AAAAAGAGTGCATCTCCGTGTTATAATGATTAATATGTATGATATAGACCTTGACACCACTATACGTATAATATaactatgatgtgtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncaatttctcagtacatcttgctgtatatataatacttcaaccaaaggataagagtattttgaatacccttgtttatctcaaggatacctaaattaaaagattttctttagtaaaaacaagttgaagctttgttttttgttcctcataaagttcacactcatttaggaatgcttgaattcaatatttcgcattccacagttatatttctattgtttcttactgtactcttttgacaaaaggctacacatacttggtagatttacattattgaacttagtttttcctaggatatctattaataatttcattgtatattgaaaaccgattgcagtttacaattttatagttattctgaaaggtaatttgtggatatttttgccattctatattactcgtatttccaaataactcactccattatacctgtatgttacctgttgttcgactgaagaaattcttatctaaacgattgcatcaataagctgggattttttacatctctgaagacaataataaacatttggtttcttaataaggattggggtacaacatgtcttaaagttaactgttttaacttttatcttctattaccaactccttttttttattgcattgaatgaggtataccgatatatattctcttcccattgatcataaatagcccataagcaatccctcgataggctgaaaaaagagtgcatctccgtgttataatgattaatatgtatgatatagaccttgacaccactatacgtataatat
gi|5 : ttcttcttcttttttaatttttcaagcatctgtatattcaattcaattcacaatacaaaatatgcatagcaaaatcaagtatcaatacagactttttttaagaaagagagagaagaaagaaggataaagaactatgatgtgtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTCAT--TTT-TGTAAAATATGATTTTTTTTTTGGTGTTTCATAAGATA--TCTAAG-TAAG-ATATT--GCAAAATGA-GTGCT-AA----TAATTTCTC--AGTTCATC--ATG-CTGTATATG-T-ATAGTA-TT--TC-A-ACCAT-A--GG-AA-AAGAGT-AT---TTT-CAAT-------------------CATG-AATAC----CCAA--A-ATAAAAGATTTTGTG-G-TAAAA-A--CCAAT----CGAAGGT-TGGT--TTTATCTTC-A-------TAAAGTTCAA-ACTCATCT-ACGAATGAC------TGAA-CAA-AATCACA-TTCCC-ACA-G-TAACTGT-TCAAT------TGTTT--CC-TCCTCCCTGTGACAAAA-GG-----TACAGATC-TT--AAG-AG-TTT--ATCTT--TTAG-TTTTGAACAGA-AAAGAAT-TAG--T-TGC-TAAA--AT-TC-TATTAATTA--TTC-TA---TA-TT--GAAACC-ATTGG-AG-TTTCCAA-TTTTTAGT-TATTT---TGAAAG---GTAAGATGT-TGAAAATTTC---CATTCTC-TA------TTATCTATAGCT--AAACAA--TCGCTCCAT-CGTAT-----TGTGC---CTGC-CGTC--ATCGCAT-TGTTTTTGTTT-AAA-ATCTCGT-AA-AAGAAATTTGGCTT-----------------------------TTT-ATTCT--AATAAGT-GGATT-TGGT---AATT-T-TCAAAGTTA-TTGCT-TGCACCTGG---CTTTATAATCA-----AAG-TCCTAATAGCA-TGAA-----TAATACTTGCC---CAATCTGA-GAATTTAATCTTCACACTTGG--T--TAA-GTAG-CACTAA--AGT-TCTCATA--GC-TACAAAA--CGTA-CTATCT
gi|6 : cgTTTGTTGATAATCTTT-TCTTATTTTTCA-GACAT-CTGTA-------TTTCT--CATTTCATCAT--G-A-------ATTGCAAAACAT-----TGATCGCACGAAGCA-A-AGTTAAAA-AATC--C----A-ATTAGACTTTT-TTTTTAAAAAGAAAGAATGGATGAG-AAA-G-GAA--AGATGTGTAGA--GAG-ACATAGAGTGTAAGttctt
gi|6 : tttggtGCATATT-GGCAAAACGAATTGCTCAA----CAATTTCTC--AGTACATC-T-TG-CTG--TATAAT-ATAATA-CT--TCAA-ACCAGTAGTGG-A--AGT-GT-ATG---TT-GAAT-tcttattnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncatctatttcagatccgcatattggcaaaacgaattgctcaacaatttctcagtacatcttgctgtataatataatacttcaaaccagtagtggaagtgtatgttgaat
gi|7 : tttggttttgttgataatcttttcttatttttcagacatctgtatttctcatttcatcatgaattgcaaaacattgatcgcacgaagcaaagttaaaaaatccaattagactttttttttaaaaagaaagaatggatgagaaaggaaagatgtgtagagagacatagagtgtaagtcttattnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncatctatttcagatccTTTTTTTAT---TCTT-TATT-TTT--CAAGGCAT-TAGTA-------TATT---AATT-CA---C--A-A-------A---CAAAA--T-----AT---GCA--TAACAAA-A--TCAAG-AATC--A----ATA-CAGACTTTT-TT
gi|8 : accacaaaattaaggggcaacaattaTTTTTTTATA-TTTTT-TATT-TTT--CA-AGCAT-CTGTAAATAGTTTGTTTTACATTACA--AT--A-A------------------------TA---GCA--TAACA-A-ATATCAAG-CATC--A----AT--CAGACTTTTATTTT--AAG--AAAGA---GAAGAG-ATA-AAGAA--AGAAT--TAGAGAGAG--AATAGAGTGTGAG--GCTTATGAA--ATTAGGT--TC--TCTGTGTCCACTGGCAT--CAAACATTCT-------------TTTCTTATAGTTTGTGTAAAAGATAAT--TTTTTT--GTGTTT-aaagaattnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnacaa
gi|9 : aagggaaaaaaatgatttcggtccttaattggcgacgaatttttttttTTTTTTCATGATTCTT-TATT-TTTTT-A-AACAT-CTGTA-------TATTT--CA---CA--AC--A------------AC-----------------------AACATA-AGGTCCAA-A--C--A----AT-CGAGA---TT-TTTT--ATGAGAAAGA---GA-GAG-AGN-NNNNN--N------NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-NNNNNNNNNNNNNNNNNNNNNNNNN-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAAATTTGCCAT--TTT-TGT-AAA-AT-ATAATTTTTT--TTGTca
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|10 ): TTCATCAANGGTTTCAGTTTCCTTTTTTACAAAAAGTACATAAATCTGTATCTTTGGTTTTATGCAAAAAGAAGTTTGTTGAGAGAATAATATGATTTATTTGAAACTGAAACCATTGGAATTTTGTATTCTTAGTAAGCTTGAATGGGAGGGCAAATATATTTTCCCATTCATCATCACTCAGATCGA
Unaligned ( gi|14 ): TTACAAGAAATAGTTGTAAAAGGTGGCATTCCCATAAACGGTGTTCCTTTGGCAAAAGTTGCAATATTAAGAGTCTATACTTTTTAATTTTGAACAGGAA
Unaligned ( gi|16 ): TAGAAGTTGCTATCAAACTAGTGTGTACGAGCATCCTAGCAATTGCCGAACTTATTTCTTTTTTTTTTTTTTTTT
Alignments
lowQualScore : 11 1111111 1111 4444444444444444444444444444444 111111 222222222222 111 1 222222222 11 111111 4444444444444 1111 1 11 11 1 11111 11 222222 111 1 11 1 11111111111 1111 1 111111 1111 2222 1111 3333 22 11 33333333 111 11 1 2222 1 333333333333 1111 11 3333333 1 11 1 111 11 2 1 111 11 2222222 1111 11 1 111 22222222 1 11 111 11 111 33333 22222 22222 33333 11 1 11 11 11 2222 11 2222 1 1
lowQualScore : 55 5 5 55 4 4 1 4444444 1 4444 8 66 66 4444444444444444444444444444444 888 222222 4 000000000000 4 66 6 000 1 5 5 888888888 0 33 1 88 1 8 88 000000 1 8 88 0000000000000 77 5 0 6666 55 77 3 1 7 9 99 33 1 55555 33 3 111111 3 333 0 66 0 5 99999999999 55 5 8888 0 555555 6 6 99 6 4444 1111 0000 7777 00 5 5 3 88 55555555 1 0 8 3 0 8 5 444 8 11 3 0 55 8 8 8 1 3333 0 99 8 66 8 111111111111 8 2222 8 8 11 0 4444444 0 0 5 11 8 0 5 8 5 333 0 8 8 11 0 3 0 8 8 6 0 0 444 1 88 8 88 8 8888888 7777 11 0 0 666 99999999 88 0 11 8 8 8 5 8 0 3 444 1 8 1 5 8 11 0 0 8 444 8 5 3 11111 00000 0 8 8 00000 8 8 11111 66 8 8 11 0 8 11 8 11 8 8 11 1111 33 1111 0 0
lowQualScore : .. . . .. . . . ....... . .... . .. .. ............................... ... ...... . ............ . .. . ... . . . ......... . .. . .. . . .. ...... . . .. ............. .. . . .... .. .. . . . . .. .. . ..... .. . ...... . ... . .. . . ........... .. . .... . ...... . . .. . .... .... .... .... .. . . . .. ........ . . . . . . . ... . .. . . .. . . . . .... . .. . .. . ............ . .... . . .. . ....... . . . .. . . . . . ... . . . .. . . . . . . . . ... . .. . .. . ....... .... .. . . ... ........ .. . .. . . . . . . . ... . . . . . .. . . . ... . . . ..... ..... . . . ..... . . ..... .. . . .. . . .. . .. . . .. .... .. .... . .
lowQualScore : 33 0 0 55 4 4 9 4444444 0 6666 9 11 11 4444444444444444444444444444444 444 111111 4 444444444444 4 99 6 000 4 7 7 999999999 2 22 3 44 0 0 22 444444 0 0 44 6666666666666 99 7 9 0000 66 99 3 0 6 8 77 33 4 66666 88 2 888888 2 444 0 99 0 0 22222222222 22 0 9999 0 888888 7 7 88 7 2222 0000 8888 2222 66 0 0 8 66 22222222 4 8 0 8 8 0 0 000 0 44 8 0 88 0 0 0 0 6666 0 22 0 44 0 222222222222 0 2222 0 0 00 8 6666666 8 0 0 00 0 8 0 0 0 000 8 0 0 22 8 2 0 0 0 0 8 0 000 4 88 0 88 0 0000000 0000 00 8 0 000 66666666 88 0 00 0 0 0 0 0 8 2 000 0 0 0 6 0 00 8 8 0 000 0 0 2 00000 00000 8 0 0 00000 0 0 00000 44 0 0 00 6 0 00 0 00 0 0 00 2222 88 2222 0 0
consensus : TTTTTTTATAATTTTT-TATT-TTTTTCA-GACAT-CTGTA-------TNTTT--CATT-CA--AT--A-A-------AT-ACANAA--T-----TA---GCA--AAACATA-AGTTCAAG-AATC--A----ATACCAGACTTTT-TTTT--AAGTGAAAGA---GA-GAG-AGA-GAGAA--A------TAGAGCGAGTAGATAGAGTGTAAGCTGCTNA-GAACGATTAGGTCGTCAATCTGTNT-CACTGGCATGACAAACATTCCATTT-------AGTTTCTCAT--TTT-TGTAAAA-ATAATAATTTTTT--GTGTTT-ATAAAANAGTTCTAAGGTAAGTATATTTGGCAAAACGAAGTGCTCAA----CAATTTCTC--AGTACATC-TGTGTCTGTATATAAT-ATAATA-CT--TC-A-ACCAA-A--GG-AT-AGG-GT-ATG--TTT-GAAT-ACTT-CTT-GT-TTAT-TCAAG-GATAC----CTAA--A-ATAAATGATTTTTTTCA-TAAAATATTCTAGTGTCGTGAGGGTGTGAT-ATTTTTGTTC-ACAGGTGATATGGTTTCA-ACTCATTTTAGGAATG-CGTG---TGAA-CATTAATCACAGTTCCCGACA-G-TATATGT-CTANTCTG-GTTGTCTGACT-TCCTCTCTTTGACAAGA-GG-----CA----TG-TT--G-G-AG-TTT--ACCTT--T--A-TTTTGGATAGAGAAAGAATGTGG--T-TTCCTAGAGGAT-TCGTATTA-TNAAGTTC-TGGT-TA-CTTGGAAACCGATTGC-AG-TTTACAAATTTTTAGTGTAGTT---TGATAGT-GGTAAT-TGTGTGGATATTTCT-TCATTCTA-TA------GTATCT----TT--CAACAAATTCACTCCAT-C-TAT-----TGTGCT-CCTGTGTGTC--ACTGAAG-AATTCTTATTT-CAC-ATTTCATGAA-AAGAATTTTGATTTCTTACA---CTAATGG-AACATTGTAACATTT-GTTTC--AATAAATAGGATT-TGGT---ACTTGT-TTAAAGTTACTTATTCTACAGTT-----TTTTATGCCCA-----TTGTTTTTAAT-GCA-TGAA-----T-ATAC-TG-----TATTTTCATGAAGTTAATTTTC-CA-TTGGGAT--TAATATAG-CCATAA--AAT-TCTCAAT--GC-GA-AAGA--AGTACCTATTTGT----TAATGAT--ATATTT----TATATATC-TGACAGCACTGT-CAAATAGTATTGTTTATTAAAAAATGCTTTACCACCAATATGGGATCATAGGGAGTTAAAAAGAGTACAGTGAGTCTGACAGATGACATCAGACTGTTAATGAGTTCTGCAGCTCAATCTCATGCCTAAAATACATCTACCAAAAGTTTGTTTTGTTAATGATTTCAAAGTCGTATTAGATGTATTCCAGTTCCACGATGTGATTTGAAAGTTCTAATTTAGGAATGAGATATTTGCTTCAATTTCTTTTGTTAAGTGAAGTTGCCTTATCCAAACTAATTTCAGAGAGGCAATTAAAGATTTGAAATGTCCCATTTGTAAAAGACACCTGCGAACTGATGTTTGAAATATCTAATTGTTGTTTTTAATAAAGT
Reference ( family-6306 ) : TTTTTTTATAATTTTT-TATT-TTTTTCA-GACAT-CTGTA-------TNTTT--CATT-CA--AT--A-A-------AT-ACANAA--T-----TA---GCA--AAACATA-AGTTCAAG-AATC--A----ATACCAGACTTTT-TTTT--AAGTGAAAGA---GA-GAG-AGA-GAGAA--A------TAGAGCGAGTAGATAGAGTGTAAGCTGCTNA-GAACGATTAGGTCGTCAATCTGTNT-CACTGGCATGACAAACATTCCATTT-------AGTTTCTCAT--TTT-TGTAAAA-ATAATAATTTTTT--GTGTTT-ATAAAANAGTTCTAAGGTAAGTATATTTGGCAAAACGAAGTGCTCAA----CAATTTCTC--AGTACATC-TGTGTCTGTATATAAT-ATAATA-CT--TC-A-ACCAA-A--GG-AT-AGG-GT-ATG--TTT-GAAT-ACTT-CTT-GT-TTAT-TCAAG-GATAC----CTAA--A-ATAAATGATTTTTTTCA-TAAAATATTCTAGTGTCGTGAGGGTGTGAT-ATTTTTGTTC-ACAGGTGATATGGTTTCA-ACTCATTTTAGGAATG-CGTG---TGAA-CATTAATCACAGTTCCCGACA-G-TATATGT-CTANTCTG-GTTGTCTGACT-TCCTCTCTTTGACAAGA-GG-----CA----TG-TT--G-G-AG-TTT--ACCTT--T--A-TTTTGGATAGAGAAAGAATGTGG--T-TTCCTAGAGGAT-TCGTATTA-TNAAGTTC-TGGT-TA-CTTGGAAACCGATTGC-AG-TTTACAAATTTTTAGTGTAGTT---TGATAGT-GGTAAT-TGTGTGGATATTTCT-TCATTCTA-TA------GTATCT----TT--CAACAAATTCACTCCAT-C-TAT-----TGTGCT-CCTGTGTGTC--ACTGAAG-AATTCTTATTT-CAC-ATTTCATGAA-AAGAATTTTGATTTCTTACA---CTAATGG-AACATTGTAACATTT-GTTTC--AATAAATAGGATT-TGGT---ACTTGT-TTAAAGTTACTTATTCTACAGTT-----TTTTATGCCCA-----TTGTTTTTAAT-GCA-TGAA-----T-ATAC-TG-----TATTTTCATGAAGTTAATTTTC-CA-TTGGGAT--TAATATAG-CCATAA--AAT-TCTCAAT--GC-GA-AAGA--AGTACCTATTTGT----TAATGAT--ATATTT----TATATATC-TGACAGCACTGT-CAAATAGTATTGTTTATTAAAAAATGCTTTACCACCAATATGGGATCATAGGGAGTTAAAAAGAGTACAGTGAGTCTGACAGATGACATCAGACTGTTAATGAGTTCTGCAGCTCAATCTCATGCCTAAAATACATCTACCAAAAGTTTGTTTTGTTAATGATTTCAAAGTCGTATTAGATGTATTCCAGTTCCACGATGTGATTTGAAAGTTCTAATTTAGGAATGAGATATTTGCTTCAATTTCTTTTGTTAAGTGAAGTTGCCTTATCCAAACTAATTTCAGAGAGGCAATTAAAGATTTGAAATGTCCCATTTGTAAAAGACACCTGCGAACTGATGTTTGAAATATCTAATTGTTGTTTTTAATAAAGT
gi|1 : TTTTTTTATAATTTTTGTATT-TTTTTCA-GACAT-CTGTA-------TTTTT----TT-GC--AT--A-A-------AT--CAAAA--T-----AT---GCA--AAACATACAGTTCAAACAATC--ATGCAATACACGACTTTT-TTTT--AAGTGAAAGA---GA-GAG-AGAAGACAC--A------TAGAGCGA--AGATAGAGTGTAAGCTGCTGA-GAACGATTAGGTCGTCAATCTGTCT-CACTGGTATGACAAATATTTCATTT-------AGTTCCTCAT--TTT-TGTAGAA-ATAATAATTGTTT--GTGTTT-ATAAAAGAATTCTAAGGTAAGTATAGTTTGCAAC-CGAA-TGCTCAAATCGCATTTTCCT--AG-ACATCCTGTGTCTGTATATA-T-ATAATA-CTAATC-ATACCAA-A--GG-AT-AGG-GTGATGATTTT-GAAT-ACTT-CTTCGTGTTAT-TCAAGTGATACACGCTTAA--ACATAAATGATTTTTT-CA-TAAAA-A--CTAGT-TCGTGAGG-CGTTATGATTTTTGTTCCACA--T-ATATG-TTTCA-ACTCTCTTTAGGAAT--CGTG---TGAAACAT-AATC-CAGTTCCCG-CATG-TATATGTTCTATCATGCGTT-TCTATCT-T----TCTTTGACAAGACGG-----CA----TG-TTCGG-G-AG-CTTTCACCTTGTT--AATTTTGGATAGGCAAAGAATGTGG--TGTTCCTAGAG-AT-TCTAATTA-T-AAGTTC-TGGT-TAACTTG-AATCCGATTGCCAGCTTTACAAATTTTT--TGTAGTTAATTGATAGAAGGTAAT-TGTGTGGATATTTCT-TCATTCTAGTA-------TATCT----TTTCCAACAAATTCACT-CATCC-TAT-------TGCT-CCTGTGTGTC--ACTGAAG-AATTCTTATTT-CAC-ATTTCATGAA-AAGAATTTTGATTTCTTACA---CTAATGG-AACATTGTAACATTT-GTTTC--AATAAATAGGATT-TGGT---ACTTGT-TTAAAGTTACTTATTCTACAGTT-----TTTTATGCCCA-----TTGTTTTTAAT-GCA-TGAA-----T-ATAC-TG-----TATTTTCATGAAGTTAATTTTC-CA-TTGGGAT--TAATATAG-CCATAA--AAT-TCTCAAT--GC-GA-AAGA--AGTACCTATTTGT----TAATGAT--ATATTT----TATATATC-TGACAGCACTGT-CAAATAGTATTGTTTATTAAAAAATGCTTTACCACCAATATGGGATCATAGGGAGTTAAAAAGAGTACAGTGAGTCTGACAGATGACATCAGACTGTTAATGAGTTCTGCAGCTCAATCTCATGCCTAAAATACATCTACCAAAAGTTTGTTTTGTTAATGATTTCAAAGTCGTATTAGATGTATTCCAGTTCCACGATGTGATTTGAAAGTTCTAATTTAGGAATGAGATATTTGCTTCAATTTCTTTTGTTAAGTGAAGTTGCCTTATCCAAACTAATTTCAGAGAGGCAATTAAAGATTTGAAATGTCCCATTTGTAAAAGACACCTGCGAACTGATGTTTGAAATATCTAATTGTTGTTTTTAATAAAG
gi|11 : tttttATATT-GGCAAAACGAATTGCTCAA----CAATTTCTC--AGTACATC-T-TG-CTG--TATAAT-ATAATA-CT--TCAA-ACCAGTAGTGG-A--AGT-GT-ATG---TT-GAAT-A
gi|12 : TTTTTTTATTATTTCT-TATT-TTT--CA-AACATGTTGTA-------TATTT--AATT-CA--AT--A-ATACGAAAAT-ACATGA--T----------GCA--TAGAATG-A--TCAAG-AATC--A-----TAT-AGACTTTT-TT-----AGTGAAaaaatctgctgtatttacaacttatggtaaaacgtcatgacaaacgaaggtatgggcgtttctattcgcttaataatgagtttagacatatttatg
gi|13 : atttttAATTTGTC--AGTACATC-T-TG-CTATACA-AAT-ATAGTA-CT--TC-A-ACCAT-A--GGAAA-AGA-GT-AT---TTT-ATAT-GGTTAATT-TT-TTA--TCATG-AATAC----CCAA--A-ATGAAT--TTTT
gi|15 : CAT--TTT-TGTAAAA-C--ATAAATTTTT--GTGTTTCGTAAAAAGGTTTCAA-GTAAG-ACATT--GCAAAACGAA-TGCTCAA----CAA
gi|2 : TTTTTTTATAATTTTT-TATT-TTTTTCA-GACGT-CTG-A-------TTTTT--C-TT-CA--AT--A-A-------AT-ACATAA--T-----TA---GCA--AAACATA-AGTTCAAA-AATCTGA----ATACCAGACTTTT-TTTT--AAGTGAAACA---GA-GAG-AGA-GAGAA--A------TAGAGCGAGTAGTNNNNNNNNNNNNNNNNNN-NNNNNNNNNNNNNNNNNNNNNNNNN-NNNNNNNNNNNNNNNNNNNNNNNNN-------NNNNNNNNNN--NNN-NNNNNNN-NNNNNNNNNNNNN--NNNNNN-NNNNNNNNNNNCTAAGGTAAGTATATTTGGCAA--CGAAGTGCTCA-----CAATTTTTCCTAGTAC-TC-TGTGTCTGTATATAATCGTTATAGCTG-TC-A-ACCAA-A--G--AT-AGG-GT-ATG--TTTTGAATGACTT-CTT-GT-TTAT-TCAAG-GATAC----CTAATAG-ATAAATGATTTTTTTCA-TAAAATATTCTAGTGTCGTGAGGGTGTGAT-ATTTTTGTTC-ACAGGTGATATGGTTTCA-ACTCATTTTAGGAATG-CGTG---TGAA-CATTAATCACAGTTCCCGACA-G-TATATGT-CTAGTCTG-GTTGTCTGATT-TCTTCTCTTTGACAAGA-G------CA----TG-TT--G-G-AG-TTT--ACCTT-----A-TTTTGGATAGAGAAAGAATGTGG--T-TTCCTAGAGGAT-TCGTATTA-TGAAGTTC-TGGT-TA-CTTGGAAATC-ATTGC-AG-TTTACAAATTTTTAGTGTAGTT---TGATAGT-GGTAAT-TGTGTGGATATTTCT-TCATTCTA-TA------GTATCT----TT--CAACAAATTCACTC-AT-C-TAT-----TG-GCT-CTTGTGTGTC--ACTGAAG-AATTCTTATTT-CAC-ATTTCATGAA-AAGAATTTTGATTTCTTACA---CTAATGG-AACATTGTAACATTT-GTTTC--AATAAATAGGATT-TGGT---ACTTGT-TTAAAGTTACTTATTCTACAGTT-----TTTTATGCCCA-----TTGTTTTTAAT-GCA-TGAA-----T-ATAC-TG-----TATTTTCATGAAGTTAATTTTC-CA-TTGGGAT--TAATATAG-CCATAA--AAT-TCTCAAT--GC-GA-AAGA--AGTACCTATTTGT----TAATGAT--ATATTT----TATATATC-TGACAGCACTGT-CAAATAGTATTGTTTATTAAAAAATGCTTTACCACCAATATGGGATCATAGGGAGTTAAAAAGAGTACAGTGAGTCTGACAGATGACATCAGACTGTTAATGAGTTCTGCAGCTCAATCTCATGCCTAAAATACATCTACCAAAAGTTTGTTTTGTTAATGATTTCAAAGTCGTATTAGATGTATTCCAGTTCCACGATGTGATTTGAAAGTTCTAATTTAGGAATGAGATATTTGCTTCAATTTCTTTTGTTAAGTGAAGTTGCCTTATCCAAACTAATTTCAGAGAGGCAATTAAAGATTTGAAATGTCCCATTTGTAAAAGACACCTGCGAACTGATGTTTGAAATATCTAATTGTTGTTTTTAATAAAGT
gi|3 : A-GACGT-CTG-A-------TTTTT--C-TT-CA--AT--A-A-------AT-ACATAA--T-----TA---GCA--AAACATA-AGTTCAAA-AATCTGA----ATACCAGACTTTT-TTTT--AAGTGAAACA---GA-GAG-AGA-GAGAA--A------TAGAGCGAGTAGTNNNNNNNNNNNNNNNNNN-NNNNNNNNNNNNNNNNNNNNNNNNN-NNNNNNNNNNNNNNNNNNNNNNNNN-------NNNNNNNNNN--NNN-NNNNNNN-NNNNNNNNNNNNN--NNNNNN-NNNNNNNNNNNCTAAGGTAAGTATATTTGGCAA--CGAAGTGCTCA-----CAATTTTTCCTAGTAC-TC-TGTGTCTGTATATAATCGTTATAGCTG-TC-A-ACCAA-A--G--AT-AGG-GT-ATG--TTTTGAATGACTT-CTT-GT-TTAT-TCAAG-GATAC----CTAATAG-ATAAATGATTTTTTTCA-TAAAATATTCTAGTGTCGTGAGGGTGTGAT-ATTTTTGTTC-ACAGGTGATATGGTTTCA-ACTCATTTTAGGAATG-CGTG---TGAA-CATTAATCACAGTTCCCGACA-G-TATATGT-CTAGTCTG-GTTGTCTGATT-TCTTCTCTTTGACAAGA-G------CA----TG-TT--G-G-AG-TTT--ACCTT-----A-TTTTGGATAGAGAAAGAATGTGG--T-TTCCTAGAGGAT-TCGTATTA-TGAAGTTC-TGGT-TA-CTTGGAAATC-ATTGC-AG-TTTACAAATTTTTAGTGTAGTT---TGATAGT-GGTAAT-TGTGTGGATATTTCT-TCATTCTA-TA------GTATCT----TT--CAACAAATTCACTC-AT-C-TAT-----TG-GCT-CTTGTGTGTC--ACTGAAG-AATTCTTATTT-CAC-ATTTCATGAA-AAGAATTTTGATTTCTTACA---CTAATGG-AACATTGTAACATTT-GTTTC--AATAAATAGGATT-TGGT---ACTTGT-TTAAAGTTACTTATTCTACAGTT-----TTTTATGCCCA-----TTGTTTTTAAT-GCA-TGAA-----T-ATAC-TG-----TATTTTCATGAAGTTAATTTTC-CA-TTGGGAT--TAATATAG-CCATAA--AAT-TCTCAAT--GC-GA-AAGA--AGTACCTATTTGT----TAATGAT--ATATTT----TATATATC-TGACAGCACTGT-CAAATAGTATTGTTTATTAAAAAATGCTTTACCACCAATATGGGATCATAGGGAGTTAAAAAGAGTACAGTGAGTCTGACAGATGACATCAGACTGTTAATGAGTTCTGCAGCTCAATCTCATGCCTAAAATACATCTACCAAAAGTTTGTTTTGTTAATGATTTCAAAGTCGTATTAGATGTATTCCAGTTCCACGATGTGATTTGAAAGTTCTAATTTAGGAATGAGATATTTGCTTCAATTTCTTTTGTTAAGTGAAGTTGCCTTATCCAAACTAATTTCAGAGAGGCAATTAAAGATTTGAAATGTCCCATTTGTAAAAGACACCTGCGAACTGATGTTTGAAATATCTAATTGTTGTTTTTAATAAAGT
gi|4 : TTTTT-TAAT-TTTT-CA-AGCAT-CTGTA-------TATTC--AATT-CA--ATTCACA-------AT-ACAAAA--TATGCATA---GCA--AAA--------TCAAG-TATC--A----ATAC-AGACTT-T-TTTT--AA--GAAAGA---GA-GAGAAGA-AAGAAGGA------TAAAGc
gi|4 : ttcttcttc----CAATTTCTC--AGTACATC-T-TG-CTGTATATA----TAATA-CT--TC-A-ACCAA-A--GG-ATAAGA-GT-AT---TTT-GAAT-AC-C-CTT-GT-TTATCTCAAG-GATAC----CTAA--A-TTAAAAGATTTTCTTTAGTAAAA-A--CAAGT----TGAAGCTTTG-T--TTTTTGTTC--C---TCATAAAG-TTCACACTCA-TTTAGGAATG-CTTGAATTCAA-TATT--TCGCA-TTCC--ACA-GTTATATTT-CTATT----GTT-TCTTACTGTACTCT-TTTGACAAAA-GGCTACACA----TACTT--G-GTAGATTT--ACA-T--T--A-TT-------------GAACTTAGTTT-TTCCT--AGGATATC-TATTA-ATAATTTCATTGTATA--TTGAAAACCGATTGC-AG-TTTACAATTTTATAGT-TATTC---TGAAA---GGTAAT-T-TGTGGATATTTTTGCCATTCTA-TATTACTCGTAT-T----TC--CAAATAACTCACTCCAT---TATACCTGTATGTTACCTGT-TGTTCGACTGAAGAAATTCTTATCTAAACGATTGCATCAATAAG--CTGGGATTTTTTACATCTCTGAAGACAATAATA-AACATTTGGTTTCTTAATA---AGGATTGGGGTACAACATGTCTTAAAGTTAACTGTTTTA-ACTTTTATCTTCTATTACCAACTCCTTTTTTTTATT-GCATTGAATGAGGT-ATAC-CGATATATATTCTC-----------TTCC-CA-TT--GATCATAA-ATAGCCCATAAGCAATCCCTCGATAGGCTGA-AAAAAGAGTGCATCTCCGTGTTATAATGATTAATATGTATGATATAGACCTTGACACCACTATACGTATAATATaactatgatgtgtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncaatttctcagtacatcttgctgtatatataatacttcaaccaaaggataagagtattttgaatacccttgtttatctcaaggatacctaaattaaaagattttctttagtaaaaacaagttgaagctttgttttttgttcctcataaagttcacactcatttaggaatgcttgaattcaatatttcgcattccacagttatatttctattgtttcttactgtactcttttgacaaaaggctacacatacttggtagatttacattattgaacttagtttttcctaggatatctattaataatttcattgtatattgaaaaccgattgcagtttacaattttatagttattctgaaaggtaatttgtggatatttttgccattctatattactcgtatttccaaataactcactccattatacctgtatgttacctgttgttcgactgaagaaattcttatctaaacgattgcatcaataagctgggattttttacatctctgaagacaataataaacatttggtttcttaataaggattggggtacaacatgtcttaaagttaactgttttaacttttatcttctattaccaactccttttttttattgcattgaatgaggtataccgatatatattctcttcccattgatcataaatagcccataagcaatccctcgataggctgaaaaaagagtgcatctccgtgttataatgattaatatgtatgatatagaccttgacaccactatacgtataatat
gi|5 : ttcttcttcttttttaatttttcaagcatctgtatattcaattcaattcacaatacaaaatatgcatagcaaaatcaagtatcaatacagactttttttaagaaagagagagaagaaagaaggataaagaactatgatgtgtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTCAT--TTT-TGTAAAATATGATTTTTTTTTTGGTGTTTCATAAGATA--TCTAAG-TAAG-ATATT--GCAAAATGA-GTGCT-AA----TAATTTCTC--AGTTCATC--ATG-CTGTATATG-T-ATAGTA-TT--TC-A-ACCAT-A--GG-AA-AAGAGT-AT---TTT-CAAT-------------------CATG-AATAC----CCAA--A-ATAAAAGATTTTGTG-G-TAAAA-A--CCAAT----CGAAGGT-TGGT--TTTATCTTC-A-------TAAAGTTCAA-ACTCATCT-ACGAATGAC------TGAA-CAA-AATCACA-TTCCC-ACA-G-TAACTGT-TCAAT------TGTTT--CC-TCCTCCCTGTGACAAAA-GG-----TACAGATC-TT--AAG-AG-TTT--ATCTT--TTAG-TTTTGAACAGA-AAAGAAT-TAG--T-TGC-TAAA--AT-TC-TATTAATTA--TTC-TA---TA-TT--GAAACC-ATTGG-AG-TTTCCAA-TTTTTAGT-TATTT---TGAAAG---GTAAGATGT-TGAAAATTTC---CATTCTC-TA------TTATCTATAGCT--AAACAA--TCGCTCCAT-CGTAT-----TGTGC---CTGC-CGTC--ATCGCAT-TGTTTTTGTTT-AAA-ATCTCGT-AA-AAGAAATTTGGCTT-----------------------------TTT-ATTCT--AATAAGT-GGATT-TGGT---AATT-T-TCAAAGTTA-TTGCT-TGCACCTGG---CTTTATAATCA-----AAG-TCCTAATAGCA-TGAA-----TAATACTTGCC---CAATCTGA-GAATTTAATCTTCACACTTGG--T--TAA-GTAG-CACTAA--AGT-TCTCATA--GC-TACAAAA--CGTA-CTATCT
gi|6 : cgTTTGTTGATAATCTTT-TCTTATTTTTCA-GACAT-CTGTA-------TTTCT--CATTTCATCAT--G-A-------ATTGCAAAACAT-----TGATCGCACGAAGCA-A-AGTTAAAA-AATC--C----A-ATTAGACTTTT-TTTTTAAAAAGAAAGAATGGATGAG-AAA-G-GAA--AGATGTGTAGA--GAG-ACATAGAGTGTAAGttctt
gi|6 : tttggtGCATATT-GGCAAAACGAATTGCTCAA----CAATTTCTC--AGTACATC-T-TG-CTG--TATAAT-ATAATA-CT--TCAA-ACCAGTAGTGG-A--AGT-GT-ATG---TT-GAAT-tcttattnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncatctatttcagatccgcatattggcaaaacgaattgctcaacaatttctcagtacatcttgctgtataatataatacttcaaaccagtagtggaagtgtatgttgaat
gi|7 : tttggttttgttgataatcttttcttatttttcagacatctgtatttctcatttcatcatgaattgcaaaacattgatcgcacgaagcaaagttaaaaaatccaattagactttttttttaaaaagaaagaatggatgagaaaggaaagatgtgtagagagacatagagtgtaagtcttattnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncatctatttcagatccTTTTTTTAT---TCTT-TATT-TTT--CAAGGCAT-TAGTA-------TATT---AATT-CA---C--A-A-------A---CAAAA--T-----AT---GCA--TAACAAA-A--TCAAG-AATC--A----ATA-CAGACTTTT-TT
gi|8 : accacaaaattaaggggcaacaattaTTTTTTTATA-TTTTT-TATT-TTT--CA-AGCAT-CTGTAAATAGTTTGTTTTACATTACA--AT--A-A------------------------TA---GCA--TAACA-A-ATATCAAG-CATC--A----AT--CAGACTTTTATTTT--AAG--AAAGA---GAAGAG-ATA-AAGAA--AGAAT--TAGAGAGAG--AATAGAGTGTGAG--GCTTATGAA--ATTAGGT--TC--TCTGTGTCCACTGGCAT--CAAACATTCT-------------TTTCTTATAGTTTGTGTAAAAGATAAT--TTTTTT--GTGTTT-aaagaattnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnacaa
gi|9 : aagggaaaaaaatgatttcggtccttaattggcgacgaatttttttttTTTTTTCATGATTCTT-TATT-TTTTT-A-AACAT-CTGTA-------TATTT--CA---CA--AC--A------------AC-----------------------AACATA-AGGTCCAA-A--C--A----AT-CGAGA---TT-TTTT--ATGAGAAAGA---GA-GAG-AGN-NNNNN--N------NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-NNNNNNNNNNNNNNNNNNNNNNNNN-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAAATTTGCCAT--TTT-TGT-AAA-AT-ATAATTTTTT--TTGTca
blockSeqs : TA . A TT A G T AATAGTT A TACA T TC TC CAATACAAAATATGCATA CGA TAAGT . TGAATACC A TA T ATG T A . AGATGTG GT T NN N T NN NNNNNN N C NN NNNNNNNNNGAAA AG G TATG AA TG C A G T TG AA T A CT A TGTGT T ATC G G A . GTAGTGGA GA . GT T GGTTA . . TC . . TAG TTAG TATT GT G G A A ACAGGTG T C T A G AAT . TA A G GA . T . G CTG G GA G CT . GCTACACA C AA T A . TTAG G G TT . G A G ATT A A C G G . . A G . T T A TG . TTACTCG ATAG . C CG ACCTGTAT TA G CG A A G G T C TCT T C T T G TT G ACA C C C TTATC ACTCC A T TGAGG A T ATATA AT A C CA T C GC C AG T C AG GTTA TA ATGA T A
blockSeqs : AA . . TT . . T . T AA A . . AATTGCAAAACATTGATC T TAAGT . TGAATACC . . T . A . . AGAAT GT T NN N . NN NNNNNN N . NN NNNNNN . . GATA NN . C N N T TG AA G A CT A TGTGT T ATC G G A . GTAGTGGA T . GT T GACTT . . T . . TAG TCA TATT GT G G A A ACAGGTG T . T . G . . TA A G GA . . . G CTG G GA . CT . GTACAGA . G . . . TA G G . . G . G TG . . C G . . . A G . T T . T . G . . C C TGT T G . . . . G . C . T . T T . . . . . C C GG . . . . . . CC AT . . . T . . . . . . . . . . . .
blockSeqs : AA . . TT . . T . T AA . . . ATACGAAAATACATGAT A TAAGG . AATAC . . T . . . . GGA NN A NN T . NN NNNNNN G . NN NNNNNN . . NNN NN . . N N C G AA G A . A TTG T AT . . . . TAGGAAA A . G . GACTT . . T . . A TCA A . C T G . CTC A . T . T . . T G . A . . . T . G TA . AC . CA . G . . . A . T . . G . . TG . . T A . . . T . . A . . T . G . . . C TG T . . . . . C . T . A . A . . . . . . A T . . . . . . . . A . . . . . . . . . . . . . . . .
blockSeqs : GA . . T . . T . A CA . . . AATACATAATTA A AAGT . CAATT . . A . . . . A G A . N . . TC N . . . . . NNN TT . . T . . G AA G A . A TTG T AT . . . . AAGGATA G . T . ACC . . . . . A GG A . G . . . A A . . . . . . A A . A . . . A . . . . CC . CA . G . . . A . . . . . . . AT . . . G . . . . . . A . . . . T . . . . TG . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : A . . . . . T . T AA . . . AATACATAATTA A AATA . AATAC . . A . . . . A G N . . AT AA . . . . . T . . A TTG T AT . . . . TAGGAA G . T . . . . . . . A
blockSeqs : . . . . . . T . A CA . . . AACAAAATAT T TGA . AATCG . . . . . . . N . . C . . . . . . . . ATG . T . . . . AAGAT A . T .
blockSeqs : . . . . . . . G C . . . ATA T AAA . ATAT . . . . . TTG . . . . . . AAGAT T . G .
blockSeqs : . . . . A C . . . AC . . . AATC .
blockSeqCons : AA** AATACATAATTA******************* TAAG** AATAC******* GT TG AA A**** TTG*** AT* ** TAGGAA***** T*** GACTT* T* **** A*** TNA* ** ** ACT***** **** CC CA********** G*** ** TA***** TG* C* *** ** G****** ** C** TGT*****
originalCons : TTTTTTTATAATTTTT-TATT-TTTTTCA-GACAT-CTGTA-------TNTTT--CATT-CA--AT--A-A-------AT-ACANAA--T-----TA---GCA--AAACATA-AGTTCAAG-AATC--A----ATACCAGACTTTT-TTTT--AAGTGAAAGA---GA-GAG-AGA-GAGAA--A------TAGAGCGAGTAGATAGAGTGTAAGCTGCTNA-GAACGATTAGGTCGTCAATCTGTNT-CACTGGCATGACAAACATTCCATTT-------AGTTTCTCAT--TTT-TGTAAAA-ATAATAATTTTTT--GTGTTT-ATAAAANAGTTCTAAGGTAAGTATATTTGGCAAAACGAAGTGCTCAA----CAATTTCTC--AGTACATC-TGTGTCTGTATATAAT-ATAATA-CT--TC-A-ACCAA-A--GG-AT-AGG-GT-ATG--TTT-GAAT-ACTT-CTT-GT-TTAT-TCAAG-GATAC----CTAA--A-ATAAATGATTTTTTTCA-TAAAATATTCTAGTGTCGTGAGGGTGTGAT-ATTTTTGTTC-ACAGGTGATATGGTTTCA-ACTCATTTTAGGAATG-CGTG---TGAA-CATTAATCACAGTTCCCGACA-G-TATATGT-CTANTCTG-GTTGTCTGACT-TCCTCTCTTTGACAAGA-GG-----CA----TG-TT--G-G-AG-TTT--ACCTT--T--A-TTTTGGATAGAGAAAGAATGTGG--T-TTCCTAGAGGAT-TCGTATTA-TNAAGTTC-TGGT-TA-CTTGGAAACCGATTGC-AG-TTTACAAATTTTTAGTGTAGTT---TGATAGT-GGTAAT-TGTGTGGATATTTCT-TCATTCTA-TA------GTATCT----TT--CAACAAATTCACTCCAT-C-TAT-----TGTGCT-CCTGTGTGTC--ACTGAAG-AATTCTTATTT-CAC-ATTTCATGAA-AAGAATTTTGATTTCTTACA---CTAATGG-AACATTGTAACATTT-GTTTC--AATAAATAGGATT-TGGT---ACTTGT-TTAAAGTTACTTATTCTACAGTT-----TTTTATGCCCA-----TTGTTTTTAAT-GCA-TGAA-----T-ATAC-TG-----TATTTTCATGAAGTTAATTTTC-CA-TTGGGAT--TAATATAG-CCATAA--AAT-TCTCAAT--GC-GA-AAGA--AGTACCTATTTGT----TAATGAT--ATATTT----TATATATC-TGACAGCACTGT-CAAATAGTATTGTTTATTAAAAAATGCTTTACCACCAATATGGGATCATAGGGAGTTAAAAAGAGTACAGTGAGTCTGACAGATGACATCAGACTGTTAATGAGTTCTGCAGCTCAATCTCATGCCTAAAATACATCTACCAAAAGTTTGTTTTGTTAATGATTTCAAAGTCGTATTAGATGTATTCCAGTTCCACGATGTGATTTGAAAGTTCTAATTTAGGAATGAGATATTTGCTTCAATTTCTTTTGTTAAGTGAAGTTGCCTTATCCAAACTAATTTCAGAGAGGCAATTAAAGATTTGAAATGTCCCATTTGTAAAAGACACCTGCGAACTGATGTTTGAAATATCTAATTGTTGTTTTTAATAAAGT
finalCons : TTTTTTTATAATTTTT-TATT-TTTTTCA-GACAT-CTGTA-------TNTTTAA--TT-CA--AT--AAATACATAATTA-------------------GCA--AAACATAAG--TCAAG-AATCAATAC-------AGACTTTT-TTTT--AAGTGAAAGA---GA-GAG-AGA-GAGAA--A------TAGAGCGAGTAGATAGAGTGTAAGCTGCTNA-GAACGATTAGGTCGTCAATCTGTNT-CACTGGCATGACAAACATTCCATTT-------AGTTTCTCAT--TTT-TGTAAAA-ATAATAATTTTTT--GTGTTT-ATAAAANAGTTCTAAGGTAAGTATATTTGGCAAAACGAAGTGCTCAA----CAATTTCTC--AGTACATCTTG---CTGTATATAAT-ATAATA-CT--TC-A-ACCATAGGAA-----AGG-GT-ATT---TT-GAATGACTT-CTT-GT-TTAT-TCAAG-GATAC----CTAAA---ATAAATGATTTTTTTNA-TAAAATATTCTAGT--CGTGAGGGTGTGAT--TTTTTGTTCACT-----ATATGGTTTCA-ACTCATTTTAGGAATG-CGTG---TGAA-CATTAATCACAGTTCCCGACA-G-TATATGT-CTANT----GTTGTCTGACT-TCCTCTCTTTGACAAGA-GCA----------TG-TTG---G-AG-TTT--ACCTTTA-----TTTTGGATAGAGAAAGAATGTGG--T-TTCCTAGAGGAT-TCGTATTATG-AAGTTC-TGGT-TAC-TTGGAAACCGATTGC-AG-TTTACAAATTTTTAGTGTAGTT---TGATAG--GGTAAT-TGTGTGGATATTTCT-TCATTCTA-TAG------TATCT----TT--CAACAAATTCACTCCATC--TATTGT-----GCT-CCTGTGTGTC--ACTGAAG-AATTCTTATTT-CAC-ATTTCATGAA-AAGAATTTTGATTTCTTACA---CTAATGG-AACATTGTAACATTT-GTTTC--AATAAATAGGATT-TGGT---ACTTGT-TTAAAGTTACTTATTCTACAGTT-----TTTTATGCCCA-----TTGTTTTTAAT-GCA-TGAA-----T-ATAC-TG-----TATTTTCATGAAGTTAATTTTC-CA-TTGGGAT--TAATATAG-CCATAA--AAT-TCTCAAT--GC-GA-AAGA--AGTACCTATTTGT----TAATGAT--ATATTT----TATATATC-TGACAGCACTGT-CAAATAGTATTGTTTATTAAAAAATGCTTTACCACCAATATGGGATCATAGGGAGTTAAAAAGAGTACAGTGAGTCTGACAGATGACATCAGACTGTTAATGAGTTCTGCAGCTCAATCTCATGCCTAAAATACATCTACCAAAAGTTTGTTTTGTTAATGATTTCAAAGTCGTATTAGATGTATTCCAGTTCCACGATGTGATTTGAAAGTTCTAATTTAGGAATGAGATATTTGCTTCAATTTCTTTTGTTAAGTGAAGTTGCCTTATCCAAACTAATTTCAGAGAGGCAATTAAAGATTTGAAATGTCCCATTTGTAAAAGACACCTGCGAACTGATGTTTGAAATATCTAATTGTTGTTTTTAATAAAGT
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|10 ): TTCATCAANGGTTTCAGTTTCCTTTTTTACAAAAAGTACATAAATCTGTATCTTTGGTTTTATGCAAAAAGAAGTTTGTTGAGAGAATAATATGATTTATTTGAAACTGAAACCATTGGAATTTTGTATTCTTAGTAAGCTTGAATGGGAGGGCAAATATATTTTCCCATTCATCATCACTCAGATCGA
Unaligned ( gi|14 ): TTACAAGAAATAGTTGTAAAAGGTGGCATTCCCATAAACGGTGTTCCTTTGGCAAAAGTTGCAATATTAAGAGTCTATACTTTTTAATTTTGAACAGGAA
Unaligned ( gi|16 ): TAGAAGTTGCTATCAAACTAGTGTGTACGAGCATCCTAGCAATTGCCGAACTTATTTCTTTTTTTTTTTTTTTTT
Alignments
lowQualScore : 3333333333333333333333 111 22 33333333333333333333333 1111111 111 222222222 11 111111 4444444444444 1111 1 11 11 1 11111 11 1 111 111 1 11 1 11 1 1111 11 1 1111 2222 3333 3333 11 1 66666666 1 111 1 33333 11 333333333333 11 11 3333333 1 1111 1 1 11 2 1 111 1 22 2222222 1111 11 1 111 22222222 1 11 111 11 111 33333 22222 22222 33333 11 1 11 11 11 2222 11 2222 1 1
lowQualScore : 55 5 0 5 66 4 4 1 66 55 9999999999999999999999 000 33 77 33333333333333333333333 4 66 8888888 999 4 4 66 88 000 5 5 5 5 888888888 0 33 1 88 1 8 88 000000 1 8 88 0000000000000 77 5 0 6666 55 77 3 1 7 9 99 33 1 55555 33 3 0 888 3 333 0 66 0 5 99 0 5 55 55 0000 33 3 55 6 6 99 6 4444 1111 6 11 7777 5555 8 66 3 6 0 22222222 1 0 8 3 8 5 444 8 777 3 0 55 8 8 8 22222 8 55 8 999999999999 8 99 8 8 11 0 4444444 0 0 5 9999 0 5 8 5 8 0 0 8 8 11 0 3 0 8 8 0 0 0 444 0 77 8 88 8 8888888 7777 11 0 0 666 99999999 3 8 0 11 8 8 8 5 8 0 3 444 1 8 1 5 8 11 0 0 8 444 8 5 3 11111 00000 0 8 8 00000 8 8 11111 66 8 8 11 0 8 11 8 11 8 8 11 1111 33 1111 0 0
lowQualScore : .. . . . .. . . . .. .. ...................... ... .. .. ....................... . .. ....... ... . . .. .. ... . . . . ......... . .. . .. . . .. ...... . . .. ............. .. . . .... .. .. . . . . .. .. . ..... .. . . ... . ... . .. . . .. . . .. .. .... .. . .. . . .. . .... .... . .. .... .... . .. . . . ........ . . . . . . ... . ... . . .. . . . ..... . .. . ............ . .. . . .. . ....... . . . .... . . . . . . . . . .. . . . . . . . . ... . .. . .. . ....... .... .. . . ... ........ . . . .. . . . . . . . ... . . . . . .. . . . ... . . . ..... ..... . . . ..... . . ..... .. . . .. . . .. . .. . . .. .... .. .... . .
lowQualScore : 33 0 4 0 44 4 4 9 11 44 8888888888888888888888 222 77 00 22222222222222222222222 4 11 1111111 888 4 4 99 00 000 7 7 7 7 999999999 2 22 3 44 0 0 22 444444 0 0 44 6666666666666 99 7 9 0000 66 99 3 0 6 8 77 33 4 66666 88 2 0 888 2 444 0 99 0 0 88 0 0 88 22 6666 88 7 00 7 7 88 7 2222 0000 7 88 2222 0000 0 22 8 0 8 66666666 4 8 0 6 0 0 000 0 666 8 0 88 0 0 0 88888 0 66 0 000000000000 0 00 0 0 00 8 6666666 8 0 0 8888 8 0 0 0 0 0 8 0 0 22 8 2 0 0 0 8 8 0 000 6 00 0 88 0 0000000 0000 00 8 0 000 66666666 2 0 0 00 0 0 0 0 0 8 2 000 0 0 0 6 0 00 8 8 0 000 0 0 2 00000 00000 8 0 0 00000 0 0 00000 44 0 0 00 6 0 00 0 00 0 0 00 2222 88 2222 0 0
consensus : TTTTTTTATAATTTTT-TATT-TTTTTCA-GACAT-CTGTA--TN-TTTNATTCA-AT-------A-AATACA-T-AAT--GCAN-AACAT---------------A-A-GT-CAAG-AA--TC--A----ATAC-A-GACTTTT-TTTT--AAGTGAAAGA---G-A-GAG-AGA-GAGAA--A------TAGAGCGAGTAGATAGAGTGTAAGCTGCTNA-GAACGATTAGGTCGTCAATCTGTNT-CACTGGCATGACAAACATTCCATTT-------AGTTTCTCAT--TTT-TGTAAAA-ATAATAATTTTTT--GTGTTT-ATAAAANAGTTCTAAGGTAAGTATATTTGGCAAAACGAAGTGCTCAA----CAATTTCTC--AGTACATCT-TGT--CTGTATATAAT-ATAATA-CT--TC-A-ACCA-TAG-G-A-AAGG-GT----AT--TTTGAATGACTTCTT-GT-TTAT-TCAAG-GATAC----CTAA--A-ATAAATGATTTT-TTTCGTAAAATATTCTAGTGTCGTGAGG-GT-GTGATATTTTTGTTC-ACAGGTGATATGGTTTCA-ACTCATTTTAGGAATG-CGTG---TGAA-CATTAATCACAGTTCCCGACA-G-TATATGT-CTANTCTGGT-TGTCTGACT-TCCTCTCTTTGACAAGA--GG-----C--ATG-TT--GG-AG-TTT--ACCTT--T--A-TTTTGGATAGAGAAAGAATGTGG--T-TTCCTAGAGGAT-TCGTATT-ATNAAGTTC-TGGT-TA-CTTGGAAACCGATTGC-AG-TTTACAAATTTTTAGTGTAGTT---TGATAGT-GGTAAT-TGTGTGGATATTTCT-TCATTCTA-TA------GTATCT----TT--CAACAAATTCACTCCAT-C-TAT-----TGTGCT-CCTGTGTGTC--ACTGAAG-AATTCTTATTT-CAC-ATTTCATGAA-AAGAATTTTGATTTCTTACA---CTAATGG-AACATTGTAACATTT-GTTTC--AATAAATAGGATT-TGGT---ACTTGT-TTAAAGTTACTTATTCTACAGTT-----TTTTATGCCCA-----TTGTTTTTAAT-GCA-TGAA-----T-ATAC-TG-----TATTTTCATGAAGTTAATTTTC-CA-TTGGGAT--TAATATAG-CCATAA--AAT-TCTCAAT--GC-GA-AAGA--AGTACCTATTTGT----TAATGAT--ATATTT----TATATATC-TGACAGCACTGT-CAAATAGTATTGTTTATTAAAAAATGCTTTACCACCAATATGGGATCATAGGGAGTTAAAAAGAGTACAGTGAGTCTGACAGATGACATCAGACTGTTAATGAGTTCTGCAGCTCAATCTCATGCCTAAAATACATCTACCAAAAGTTTGTTTTGTTAATGATTTCAAAGTCGTATTAGATGTATTCCAGTTCCACGATGTGATTTGAAAGTTCTAATTTAGGAATGAGATATTTGCTTCAATTTCTTTTGTTAAGTGAAGTTGCCTTATCCAAACTAATTTCAGAGAGGCAATTAAAGATTTGAAATGTCCCATTTGTAAAAGACACCTGCGAACTGATGTTTGAAATATCTAATTGTTGTTTTTAATAAAGT
Reference ( family-6306 ) : TTTTTTTATAATTTTT-TATT-TTTTTCA-GACAT-CTGTA--TN-TTTAATTCA-AT-------A-AATACA-T-AATTAGCAA-AACAT---------------A-A-GT-CAAG-AA--TC--A----ATAC-A-GACTTTT-TTTT--AAGTGAAAGA---G-A-GAG-AGA-GAGAA--A------TAGAGCGAGTAGATAGAGTGTAAGCTGCTNA-GAACGATTAGGTCGTCAATCTGTNT-CACTGGCATGACAAACATTCCATTT-------AGTTTCTCAT--TTT-TGTAAAA-ATAATAATTTTTT--GTGTTT-ATAAAANAGTTCTAAGGTAAGTATATTTGGCAAAACGAAGTGCTCAA----CAATTTCTC--AGTACATCT-TG---CTGTATATAAT-ATAATA-CT--TC-A-ACCA-TAG-G-A-AAGG-GT----AT--TTTGAATGACTTCTT-GT-TTAT-TCAAG-GATAC----CTAA--A-ATAAATGATTTT-TTTNATAAAATATTCTAGT--CGTGAGG-GT-GTGAT-TTTTTGTTC-AC---T-ATATGGTTTCA-ACTCATTTTAGGAATG-CGTG---TGAA-CATTAATCACAGTTCCCGACA-G-TATATGT-CTANT---GT-TGTCTGACT-TCCTCTCTTTGACAAGA--G------C--ATG-TT--GG-AG-TTT--ACCTT--T--A-TTTTGGATAGAGAAAGAATGTGG--T-TTCCTAGAGGAT-TCGTATT-ATGAAGTTC-TGGT-TA-CTTGGAAACCGATTGC-AG-TTTACAAATTTTTAGTGTAGTT---TGATAG--GGTAAT-TGTGTGGATATTTCT-TCATTCTA-TA------GTATCT----TT--CAACAAATTCACTCCAT-C-TAT-----TGTGCT-CCTGTGTGTC--ACTGAAG-AATTCTTATTT-CAC-ATTTCATGAA-AAGAATTTTGATTTCTTACA---CTAATGG-AACATTGTAACATTT-GTTTC--AATAAATAGGATT-TGGT---ACTTGT-TTAAAGTTACTTATTCTACAGTT-----TTTTATGCCCA-----TTGTTTTTAAT-GCA-TGAA-----T-ATAC-TG-----TATTTTCATGAAGTTAATTTTC-CA-TTGGGAT--TAATATAG-CCATAA--AAT-TCTCAAT--GC-GA-AAGA--AGTACCTATTTGT----TAATGAT--ATATTT----TATATATC-TGACAGCACTGT-CAAATAGTATTGTTTATTAAAAAATGCTTTACCACCAATATGGGATCATAGGGAGTTAAAAAGAGTACAGTGAGTCTGACAGATGACATCAGACTGTTAATGAGTTCTGCAGCTCAATCTCATGCCTAAAATACATCTACCAAAAGTTTGTTTTGTTAATGATTTCAAAGTCGTATTAGATGTATTCCAGTTCCACGATGTGATTTGAAAGTTCTAATTTAGGAATGAGATATTTGCTTCAATTTCTTTTGTTAAGTGAAGTTGCCTTATCCAAACTAATTTCAGAGAGGCAATTAAAGATTTGAAATGTCCCATTTGTAAAAGACACCTGCGAACTGATGTTTGAAATATCTAATTGTTGTTTTTAATAAAGT
gi|1 : TTTTTTTATAATTTTTGTATT-TTTTTCA-GACAT-CTGTA--TT-TTT--TTGC-AT-------A-AAT-CA-A-AATATGCAA-AACAT---------------ACA-GTTCAAACAA--TC--ATGCAATAC-ACGACTTTT-TTTT--AAGTGAAAGA---G-A-GAG-AGAAGACAC--A------TAGAGCGA--AGATAGAGTGTAAGCTGCTGA-GAACGATTAGGTCGTCAATCTGTCT-CACTGGTATGACAAATATTTCATTT-------AGTTCCTCAT--TTT-TGTAGAA-ATAATAATTGTTT--GTGTTT-ATAAAAGAATTCTAAGGTAAGTATAGTTTGCAAC-CGAA-TGCTCAAATCGCATTTTCCT--AG-ACATCC-TGTGTCTGTATATA-T-ATAATA-CTAATC-ATACCA-AAG-G-A-TAGG-GTGATGAT--TTTGAAT-ACTTCTTCGTGTTAT-TCAAGTGATACACGCTTAA--ACATAAATGATTTT-TT-CATAAAA-A--CTAGTT-CGTGAGGCGTTATGAT-TTTT-GTTCCACA--T-ATATG-TTTCA-ACTCTCTTTAGGAAT--CGTG---TGAAACAT-AATC-CAGTTCCCG-CATG-TATATGTTCTATC---ATGCGTTT--CT-ATCTTTCTTTGACAAGACGG------C--ATG-TTCGGG-AG-CTTTCACCTTGTT--AATTTTGGATAGGCAAAGAATGTGG--TGTTCCTAGAG-AT-TCTAATT-AT-AAGTTC-TGGT-TAACTTG-AATCCGATTGCCAGCTTTACAAATTTTT--TGTAGTTAATTGATAGAAGGTAAT-TGTGTGGATATTTCT-TCATTCTAGTA-------TATCT----TTTCCAACAAATTCACT-CATCC-TAT-------TGCT-CCTGTGTGTC--ACTGAAG-AATTCTTATTT-CAC-ATTTCATGAA-AAGAATTTTGATTTCTTACA---CTAATGG-AACATTGTAACATTT-GTTTC--AATAAATAGGATT-TGGT---ACTTGT-TTAAAGTTACTTATTCTACAGTT-----TTTTATGCCCA-----TTGTTTTTAAT-GCA-TGAA-----T-ATAC-TG-----TATTTTCATGAAGTTAATTTTC-CA-TTGGGAT--TAATATAG-CCATAA--AAT-TCTCAAT--GC-GA-AAGA--AGTACCTATTTGT----TAATGAT--ATATTT----TATATATC-TGACAGCACTGT-CAAATAGTATTGTTTATTAAAAAATGCTTTACCACCAATATGGGATCATAGGGAGTTAAAAAGAGTACAGTGAGTCTGACAGATGACATCAGACTGTTAATGAGTTCTGCAGCTCAATCTCATGCCTAAAATACATCTACCAAAAGTTTGTTTTGTTAATGATTTCAAAGTCGTATTAGATGTATTCCAGTTCCACGATGTGATTTGAAAGTTCTAATTTAGGAATGAGATATTTGCTTCAATTTCTTTTGTTAAGTGAAGTTGCCTTATCCAAACTAATTTCAGAGAGGCAATTAAAGATTTGAAATGTCCCATTTGTAAAAGACACCTGCGAACTGATGTTTGAAATATCTAATTGTTGTTTTTAATAAAG
gi|11 : tttttATATT-GGCAAAACGAATTGCTCAA----CAATTTCTC--AGTACATCT-TG---CTG--TATAAT-ATAATA-CT--TCAA-ACCAGTAGTG-G-AAGT-GT----AT--GTTGAATAA
gi|12 : TTTTTTTATTATTTCT-TA---TTTTTCA-AACATGTTGTA--TA-TTTAATTCA-ATAATACGAA-AATACA-T-GAT--GCAT-AGAAT---------------G-A--T-CAAG-AA--TC-------ATAT-A-GACTTTT-TT-----AGTGAAaaatctgctgtatttacaacttatggtaaaacgtcatgacaaacgaaggtatgggcgtttctattcgcttaataatgagtttagacatatttatg
gi|13 : atttttAATTTGTC--AGTACATCT-TG---CTATACA-AAT-ATAGTA-CT--TC-A-ACCA-TAG-GAA-AAGA-GT----AT--TTTATATGGTTAATT-TT-TTA--TCATG-AATAC----CCAA--A-ATGAAT--TTTT-
gi|15 : CAT--TTT-TGTAAAA-C--ATAAATTTTT--GTGTTTCGTAAAAAGGTTTCAA-GTAAG-ACATT--GCAAAACGAA-TGCTCAA----CAA
gi|2 : TTTTTTTATAATTTTT-TATT-TTTTTCA-GACGT-CTG-A--TT-TTTC-TTCA-AT-------A-AATACA-T-AATTAGCAA-AACAT---------------A-A-GTTCAAA-AA--TCTGA----ATACCA-GACTTTT-TTTT--AAGTGAAACA---G-A-GAG-AGA-GAGAA--A------TAGAGCGAGTAGTNNNNNNNNNNNNNNNNNN-NNNNNNNNNNNNNNNNNNNNNNNNN-NNNNNNNNNNNNNNNNNNNNNNNNN-------NNNNNNNNNN--NNN-NNNNNNN-NNNNNNNNNNNNN--NNNNNN-NNNNNNNNNNNCTAAGGTAAGTATATTTGGCAA--CGAAGTGCTCA-----CAATTTTTCCTAGTAC-TCTGTGT--CTGTATATAATCGTTATAGCTG-TC-A-ACCA--AA-G-A-TAGG-GT----ATGTTTTGAATGACTTCTT-GT-TTAT-TCAAG-GATAC----CTAATAG-ATAAATGATTTT-TTTCATAAAATATTCTAGTGTCGTGAGG-GT-GTGATATTTTTGTTC-ACAGGTGATATGGTTTCA-ACTCATTTTAGGAATG-CGTG---TGAA-CATTAATCACAGTTCCCGACA-G-TATATGT-CTAGTCTGGT-TGTCTGATT-TCTTCTCTTTGACAAGA--G------C--ATG-TT--GG-AG-TTT--ACCTT-----A-TTTTGGATAGAGAAAGAATGTGG--T-TTCCTAGAGGAT-TCGTATT-ATGAAGTTC-TGGT-TA-CTTGGAAATC-ATTGC-AG-TTTACAAATTTTTAGTGTAGTT---TGATAGT-GGTAAT-TGTGTGGATATTTCT-TCATTCTA-TA------GTATCT----TT--CAACAAATTCACTC-AT-C-TAT-----TG-GCT-CTTGTGTGTC--ACTGAAG-AATTCTTATTT-CAC-ATTTCATGAA-AAGAATTTTGATTTCTTACA---CTAATGG-AACATTGTAACATTT-GTTTC--AATAAATAGGATT-TGGT---ACTTGT-TTAAAGTTACTTATTCTACAGTT-----TTTTATGCCCA-----TTGTTTTTAAT-GCA-TGAA-----T-ATAC-TG-----TATTTTCATGAAGTTAATTTTC-CA-TTGGGAT--TAATATAG-CCATAA--AAT-TCTCAAT--GC-GA-AAGA--AGTACCTATTTGT----TAATGAT--ATATTT----TATATATC-TGACAGCACTGT-CAAATAGTATTGTTTATTAAAAAATGCTTTACCACCAATATGGGATCATAGGGAGTTAAAAAGAGTACAGTGAGTCTGACAGATGACATCAGACTGTTAATGAGTTCTGCAGCTCAATCTCATGCCTAAAATACATCTACCAAAAGTTTGTTTTGTTAATGATTTCAAAGTCGTATTAGATGTATTCCAGTTCCACGATGTGATTTGAAAGTTCTAATTTAGGAATGAGATATTTGCTTCAATTTCTTTTGTTAAGTGAAGTTGCCTTATCCAAACTAATTTCAGAGAGGCAATTAAAGATTTGAAATGTCCCATTTGTAAAAGACACCTGCGAACTGATGTTTGAAATATCTAATTGTTGTTTTTAATAAAGT
gi|3 : A-GACGT-CTG-A--TT-TTTC-TTCA-AT-------A-AATACA-T-AATTAGCAA-AACAT---------------A-A-GTTCAAA-AA--TCTGA----ATACCA-GACTTTT-TTTT--AAGTGAAACA---G-A-GAG-AGA-GAGAA--A------TAGAGCGAGTAGTNNNNNNNNNNNNNNNNNN-NNNNNNNNNNNNNNNNNNNNNNNNN-NNNNNNNNNNNNNNNNNNNNNNNNN-------NNNNNNNNNN--NNN-NNNNNNN-NNNNNNNNNNNNN--NNNNNN-NNNNNNNNNNNCTAAGGTAAGTATATTTGGCAA--CGAAGTGCTCA-----CAATTTTTCCTAGTAC-TCTGTGT--CTGTATATAATCGTTATAGCTG-TC-A-ACCA--AA-G-A-TAGG-GT----ATGTTTTGAATGACTTCTT-GT-TTAT-TCAAG-GATAC----CTAATAG-ATAAATGATTTT-TTTCATAAAATATTCTAGTGTCGTGAGG-GT-GTGATATTTTTGTTC-ACAGGTGATATGGTTTCA-ACTCATTTTAGGAATG-CGTG---TGAA-CATTAATCACAGTTCCCGACA-G-TATATGT-CTAGTCTGGT-TGTCTGATT-TCTTCTCTTTGACAAGA--G------C--ATG-TT--GG-AG-TTT--ACCTT-----A-TTTTGGATAGAGAAAGAATGTGG--T-TTCCTAGAGGAT-TCGTATT-ATGAAGTTC-TGGT-TA-CTTGGAAATC-ATTGC-AG-TTTACAAATTTTTAGTGTAGTT---TGATAGT-GGTAAT-TGTGTGGATATTTCT-TCATTCTA-TA------GTATCT----TT--CAACAAATTCACTC-AT-C-TAT-----TG-GCT-CTTGTGTGTC--ACTGAAG-AATTCTTATTT-CAC-ATTTCATGAA-AAGAATTTTGATTTCTTACA---CTAATGG-AACATTGTAACATTT-GTTTC--AATAAATAGGATT-TGGT---ACTTGT-TTAAAGTTACTTATTCTACAGTT-----TTTTATGCCCA-----TTGTTTTTAAT-GCA-TGAA-----T-ATAC-TG-----TATTTTCATGAAGTTAATTTTC-CA-TTGGGAT--TAATATAG-CCATAA--AAT-TCTCAAT--GC-GA-AAGA--AGTACCTATTTGT----TAATGAT--ATATTT----TATATATC-TGACAGCACTGT-CAAATAGTATTGTTTATTAAAAAATGCTTTACCACCAATATGGGATCATAGGGAGTTAAAAAGAGTACAGTGAGTCTGACAGATGACATCAGACTGTTAATGAGTTCTGCAGCTCAATCTCATGCCTAAAATACATCTACCAAAAGTTTGTTTTGTTAATGATTTCAAAGTCGTATTAGATGTATTCCAGTTCCACGATGTGATTTGAAAGTTCTAATTTAGGAATGAGATATTTGCTTCAATTTCTTTTGTTAAGTGAAGTTGCCTTATCCAAACTAATTTCAGAGAGGCAATTAAAGATTTGAAATGTCCCATTTGTAAAAGACACCTGCGAACTGATGTTTGAAATATCTAATTGTTGTTTTTAATAAAGT
gi|4 : TTTTT-TAAT-TTTT-CA-AGCAT-CTGTA--TA-TTCAATTCA-ATTC-----ACAATACA-A-AATATGCAT-AGCA----------------A-A-AT-CAAG-TA--TC--A----ATAC-A-GAC-TTT-TTTT--AA--GAAAGA---G-A-GAGAAGA-AAGAAGGA------TAAAGc
gi|4 : ttcttcttc----CAATTTCTC--AGTACATCT-TG---CTGTATATA----TAATA-CT--TC-A-ACCA-AAG-G-ATAAGA-GT----AT--TTTGAAT-AC-CCTT-GT-TTATCTCAAG-GATAC----CTAA--A-TTAAAAGATTTTCTTTAGTAAAA-A--CAAGT----TGAAG-CT-TTG-T-TTTTTGTTC-CT---C-ATAAAG-TTCACACTCA-TTTAGGAATG-CTTGAATTCAA-TATT--TCGCA-TTCC--ACA-GTTATATTT-CTATT---GT-T-TCTTACTGTACTCT-TTTGACAAAA--GGCTACAC--ATACTT--GGTAGATTT--ACA-T--T--A-TT-------------GAACTTAGTTT-TTCCT--AGGATATC-TATT-AATAATTTCATTGTATA--TTGAAAACCGATTGC-AG-TTTACAATTTTATAGT-TATTC---TGA-AA--GGTAAT-T-TGTGGATATTTTTGCCATTCTA-TATTACTCGTAT-T----TC--CAAATAACTCACTCCAT---TATACCTGTATGTTACCTGT-TGTTCGACTGAAGAAATTCTTATCTAAACGATTGCATCAATAAG--CTGGGATTTTTTACATCTCTGAAGACAATAATA-AACATTTGGTTTCTTAATA---AGGATTGGGGTACAACATGTCTTAAAGTTAACTGTTTTA-ACTTTTATCTTCTATTACCAACTCCTTTTTTTTATT-GCATTGAATGAGGT-ATAC-CGATATATATTCTC-----------TTCC-CA-TT--GATCATAA-ATAGCCCATAAGCAATCCCTCGATAGGCTGA-AAAAAGAGTGCATCTCCGTGTTATAATGATTAATATGTATGATATAGACCTTGACACCACTATACGTATAATATaactatgatgtgtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncaatttctcagtacatcttgctgtatatataatacttcaaccaaaggataagagtattttgaatacccttgtttatctcaaggatacctaaattaaaagattttctttagtaaaaacaagttgaagctttgttttttgttcctcataaagttcacactcatttaggaatgcttgaattcaatatttcgcattccacagttatatttctattgtttcttactgtactcttttgacaaaaggctacacatacttggtagatttacattattgaacttagtttttcctaggatatctattaataatttcattgtatattgaaaaccgattgcagtttacaattttatagttattctgaaaggtaatttgtggatatttttgccattctatattactcgtatttccaaataactcactccattatacctgtatgttacctgttgttcgactgaagaaattcttatctaaacgattgcatcaataagctgggattttttacatctctgaagacaataataaacatttggtttcttaataaggattggggtacaacatgtcttaaagttaactgttttaacttttatcttctattaccaactccttttttttattgcattgaatgaggtataccgatatatattctcttcccattgatcataaatagcccataagcaatccctcgataggctgaaaaaagagtgcatctccgtgttataatgattaatatgtatgatatagaccttgacaccactatacgtataatat
gi|5 : ttcttcttcttttttaatttttcaagcatctgtatattcaattcaattcacaatacaaaatatgcatagcaaaatcaagtatcaatacagactttttttaagaaagagagagaagaaagaaggataaagaactatgatgtgtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTCAT--TTT-TGTAAAATATGATTTTTTTTTTGGTGTTTCATAAGATA--TCTAAG-TAAG-ATATT--GCAAAATGA-GTGCT-AA----TAATTTCTC--AGTTCATCA-TG---CTGTATATG-T-ATAGTA-TT--TC-A-ACCA-TAG-G-A-AAAGAGT----AT--TTTCAAT------------------CATG-AATAC----CCAA--A-ATAAAAGA-TTT-TGTGGTAAAA-A--CCAAT--C--GAAG-GT--TGGT-TTTATCTTC--------ATAAAGTTCAA-ACTCA-TCTACGAATGAC------TGAA-CA-AAATCACA-TTCCC-ACA-G-TAACTGT-TCAA-----T-TGTTT--CC-TCCTCCCTGTGACAAAA--GGTA---CAGATC-TTA-AG-AG-TTT--ATCTT--TTAG-TTTTGAACAGA-AAAGAAT-TAG----TTGCTAAA--AT-TC-TATTAATTA--TTC-TA---TA-TT--GAAACC-ATTGG-AG-TTT-CCAATTTTTAGT-TATTT---TGA-AA--GGTAAGATGT-TGAAAATTTC---CATTCTC-TA------TTATCTATAGCT--AAACAA--TCGCTCCAT-CGTAT-----TGTG---CCTGC-CGTC--ATCGCAT-TGTTTTTGTTT-AAA-ATCTCGT-AA-AAGAAATTTGGCTT-----------------------------TTT-ATTCT--AATAAGT-GGATT-TGGT---AATT-T-TCAAAGTTA-TTGCT-TGCACCTGG---CTTTATAATCA-----AAG-TCCTAATAGCA-TGAA-----TAATACTTGCC---CAATCTGA-GAATTTAATCTTCACACTTGG--T--TAA-GTAG-CACTAA--AGT-TCTCATA--GC-TACAAAA--CGTA-CTATCT
gi|6 : cgTTTGTTGATAATCTTT-TCTTATTTTTCA-GACAT-CTGTA--TT-TCTCATTTC-AT-------------CA-TGAATT-GCAA-AACATTGATCGCACGAAGCAA-A-GT-TAAA-AAATCC--A----AT-T-A-GACTTTT-TTTTTAAAAAGAAAGAATGG-ATGAG-AAA-G-GAA--AGATGTGTAGA--GAG-ACATAGAGTGTAAGttctt
gi|6 : tttggtGCATATT-GGCAAAACGAATTGCTCAA----CAATTTCTC--AGTACATCT-TG---CTG--TATAAT-ATAATA-CT--TCAA-ACCAGTAGTG-G-AAGT-GT----AT--GTTGAATtcttattnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncatctatttcagatccgcatattggcaaaacgaattgctcaacaatttctcagtacatcttgctgtataatataatacttcaaaccagtagtggaagtgtatgttgaat
gi|7 : tttggttttgttgataatcttttcttatttttcagacatctgtatttctcatttcatcatgaattgcaaaacattgatcgcacgaagcaaagttaaaaaatccaattagactttttttttaaaaagaaagaatggatgagaaaggaaagatgtgtagagagacatagagtgtaagtcttattnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncatctatttcagatccTTTTTTTAT---TCTT-TATT-TTT--CAAGGCAT-TAGTA--TA-TT-AATTCA--C-------A-AA--CA-A-AATATGCAT-AACA----------------A-A-AT-CAAG-AA--TC--A----ATAC-A-GACTTTT-TT
gi|8 : accacaaaattaaggggcaacaattaTTTTTTTATA-TTTTT-TATT-TTT--CA-AGCAT-CTGTAAATAGTTTGTTTTACAT-----------TACAAT-AAT-AGCAT-AACAA---------------A-T-AT-CAAG-CA--TC--A----AT-C-A-GACTTTTATTTT--AA--GAAAGA---GAA-GAG-ATA-AAGAA--AGAAT--TAGAGAGAG--AATAGAGTGTGAG--GCTTATGAA--ATTAGGT--TC--TCTGTGTCCACTGGCAT--CAAACATTCT-------------TTTCTTATAGTTTGTGTAAAAGATAAT--TTTTTT--GTGTTT-aaagaattnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnacaa
gi|9 : aagggaaaaaaatgatttcggtccttaattggcgacgaatttttttttTTTTTTCATGATTCTT-TATT-TTTTT-A-AACAT-CTGTA--TA-TTT----------------------CA-C-AA----CAACAACAT---------------A-AGGT-CCAA-A----C--A----ATCG-A-GA---TT-TTTT--ATGAGAAAGA---G-A-GAG-AGN-NNNNN--N------NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-NNNNNNNNNNNNNNNNNNNNNNNNN-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAAATTTGCCAT--TTT-TGT-AAA-AT-ATAATTTTTT--TTGTca
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|10 ): TTCATCAANGGTTTCAGTTTCCTTTTTTACAAAAAGTACATAAATCTGTATCTTTGGTTTTATGCAAAAAGAAGTTTGTTGAGAGAATAATATGATTTATTTGAAACTGAAACCATTGGAATTTTGTATTCTTAGTAAGCTTGAATGGGAGGGCAAATATATTTTCCCATTCATCATCACTCAGATCGA
Unaligned ( gi|14 ): TTACAAGAAATAGTTGTAAAAGGTGGCATTCCCATAAACGGTGTTCCTTTGGCAAAAGTTGCAATATTAAGAGTCTATACTTTTTAATTTTGAACAGGAA
Unaligned ( gi|16 ): TAGAAGTTGCTATCAAACTAGTGTGTACGAGCATCCTAGCAATTGCCGAACTTATTTCTTTTTTTTTTTTTTTTT