lowQualScore : 1 333 2 1 1 22 1 1 22 2 2 22 2 333 1 4 11 222 22 2 2 1 1 4 444444 1 1 1 44 4 1 4444444 55555 4 4 55 2 66666666666 2 777777777777 22 4 2 1 22 11 222 22 1 22 11 33 4 8888888 1 4 4 4 222 22222 8888888888888888 1111 11 4 1 2 3333333333 1 11 1 1 1 2 33 1 333333 1 2 3 2 1 333333 2 1 333 22 33333 222 2 2222222222222 3333
lowQualScore : 2 2 0 3 5 5 333 5 8 99 6 3 7 0 1 22 1 6 99 5 1 0 22 8 4 2 0 77 0 555 6 7 4 0 2 22 444 77 0 3 0 6 6 5 6 5 6 0 444444 6 6 5 5 6 5 6 66 0 5 9999999 2 00000 0 2 0 55 0 77777777777 0 555555555555 22 0 0 3 22 88 000 22 6 3 00 88 4 11 0 2222222 5 0 0 0 333 00000 1111111111111111 7777 88 0 3 6 3333333333 3 6 88 6 5 6 0 99 5 3 88 3 6 333333 0 0 0 3 4 6 888888 5 5 2 5 1 333 88 55555 4 4 4 4 444 1 66 4 66 4 4 6 4 4 4 4 4444444444444 9999
lowQualScore : . . . . . . ... . . .. . . . . . .. . . .. . . . .. . . . . .. . ... . . . . . .. ... .. . . . . . . . . . . ...... . . . . . . . .. . . ....... . ..... . . . .. . ........... . ............ .. . . . .. .. ... .. . . .. .. . .. . ....... . . . . ... ..... ................ .... .. . . . .......... . . .. . . . . .. . . .. . . ...... . . . . . . ...... . . . . . ... .. ..... . . . . ... . .. . .. . . . . . . . ............. ....
lowQualScore : 7 7 5 8 0 0 666 7 6 22 7 3 3 6 4 00 4 0 22 0 4 6 00 0 0 5 0 55 0 000 0 0 2 0 5 00 000 55 0 0 0 0 0 0 0 0 0 0 000000 0 0 0 0 0 0 0 00 0 0 5555555 5 00000 0 5 0 00 0 55555555555 0 555555555555 55 0 0 3 00 33 777 77 7 3 00 33 0 00 0 5555555 0 0 0 0 555 00000 3333333333333333 0000 33 0 3 7 0000000000 3 7 33 7 0 7 0 55 0 3 33 3 7 777777 0 0 0 2 0 0 222222 7 7 9 7 4 666 33 88888 4 4 4 4 333 9 11 4 11 4 4 7 4 4 4 4 4444444444444 8888
consensus : AAAAGTTAAGGATCA-TGA-TTTNCGAATAGTTAAAA-AA-AA--TTGGTAG-TATATTTT--TGGAAATAAA-TACATTGATACTTCCTTCAGTATGTTATTGATTATGATTGTGTTTACCTGTTAAGATTGTGAAA--TGCGTGCTTAATTGAATGCTTGGGGTTG-AATTAGGACANAGGGTTCAAAAAACCAAAGTGTTTCAGGGATATTTTACGGGTAGTCAAGAAAATTTGTCATTTGAAGTTATGTGGGACAT-TTTCNATATTTGTTGGTGACTTTGGAACATTTCAAGCCATGAGACGTCATTTAACGGGCGCGGAAGGGCAGGCTCCGGCCGTAGGTAATGGTCCAATCTGGTGTTGTTCAGAGAACTGTTGCTGCACACTTTGATGTGTCCCAAAGTGCCATTTCTCG-ATTATGAAATCGCTTCCATCAGACTGGTGTTGTTGCTGAGAGACGATGTTCTCGTCATCCGAGGTCGACTACCGCTCGTCAGGACCGTTACTTGGCCAATATGTCTAATCGTCAAAGGTTCCAGAGTGCTGCCAAAGCTCAATAGANACTTTAATTTGAAACAGCAGCAGGGGTGCGCGTAACGGCANAAACTGTTCGTAACAGACTAC-ACGGTGCCAACATTAGAGCTTTCCGGCCAG-AGGTCCGCCCCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAGTATTAACCGGGAAAAAAAGACTGACGTTGCATAACGTGTATATCGCAANGCAAC-CTTACGGGGCATCCGAT-ACCGAG-TGAGGTTC--TAGACCC-ATCG-TCAGACCGTA-TGCC-GGTGCTAT--CGGCGATGACCTTGTTTTGATGGANGATAATGCTCGTCCTCACAGGGCTAGAAGTTGTAACGG--AC-TATCTGGAAACTGAGACTATCGAGCGA-ATGGACTGGCCGAGCNTCTCTCCCGATCTTAA-C-C-GATAGAACATGCTTGGGA----C-----A-----CAGCAG-GCAGTTTCAG--CCCGTCCAGTGCTTCCGAG-AAATCGTGAGGAAC--TT---T--GCTGCTTTGGTCGA-GGAATGGA--ATCAACTGCC-ACAAA-TCTTCTTCCGGAGACTTATCCGAAGCATGCAGAGACGTTGTCGCGCTGTTATTCAGGCACGT-GAGGTC-ATACC-ACATATTGACTTCATC-AAATCATTG-TTAAAACGATTAATTGTGAATTTT-CCGTCCTTT-N-C-ATGGCTAATTTTCATTCTG-TTTTAGGGGGT-AATGTTACAAA-GA-TGCC-TTCTG-TATGTTAACGC--TTCA-AT-G-AA-TTTGGATA--AAAAACG--ATAAATATTG-TTTG--TGT-AATTGT-TGATTTT-GAAGATAATA-TA-GT-T-------------GTGA----TGAAATATGTT
Reference ( gi|1 ) : AAAAGTTAAGGATCA-TGA-TTTTCGAATAGTTAAAA-AA-A---TTGGTAG-TA-ATTTT--TGGAAATAAA-TACATTGATACTTCCTTCAGTATGTTATTGATT--GATTGTGTTTACCTGT-AAGATTGTGAAA--TGCGTCCTTAATTGAATGCTTGGG--TG-AATT-GGACACAGGGT-CAAAAA--CAAAGTGTTTCAGGG-TAT---ACGGGTAGTCAAAAAAAATTGTCATTTGAAGTTGTGTGGGACATGTTTCGATATTTGTTGGTGACTTTGGAACATTTCAAGCCATAGGACGTCATTTAACGGGCGTGGAA--GCAA-CTCAGGCCGTAGGT-ATGGTTCAATCTGGTGTTGTTCAGAGAACTGTTGCCGCAAACTTTAATGTGTCCAAAAGTGTCA-TTCTCGAATTA-GGAATCGCTTCTATCAGACTGGTGTTGTTGCTGAGATACCACGTTCTGGTCGTCCGAGGT-AACTACCGCTCGTCAGGACCGTTACTTGGCCAATATGTC-AAGCGTCAAAGGTTCCAGAGTGC-GTC-A-GCTCAATAGAGACTTT-----GAAACAGCAACA-GGGTGCGCGTAACGGCACAAACTGTTCGTAACAGACTACAACGGTGCCAACATTAGAGCTTTCCGGCCAGCCGGTCCGCCCCAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAGTAT-AAC--GGAA-----GACTGAC-TTGCA---CAT---T--CGCA-GGCAACTCTTACGGG-CATCCGAT-ACCGAGATGAGGTTC--TAGACCCCATCGTTCAGACCGTA-TGCC-GGTGCTAT--CGGCGATGACTTTATTTTGATGGATGATAATGCTCGTCCTCACAGGGCTAGAAGTTG-AACGGGTACGTATCTGGAAAATG-GACTATCGAGCGAGATGGA-TGGCCGAGCTCTTCTCCCGATCTTAA-C-C-GATAGAACATGCTTGGGA----C-----A-----CAGCAG-ACAGTTTCAG--CCCGTCCAGT-CTTCCGAG-AA-TCGTGAGGAAC--TT---T--GCTGCTTTGGTCGA-GGAATGGA--ATCAACTGCCCACAAA-TCTTCTTCCGGAGACTTATCCGAAGCATGCAGAGACGTTGTCGCGCTGTTATTCAGGCAGGTGGAGGTCAATACC-ACATATTGACTTCATCAAAATCATTG-TT-AAACGA-TAATTGTGAA-TTT-CCGTCCTTT-A-T-ATGGCTAATTTTCATTCTG-TTTTAGGGGGT-AATGTTAC-AA-GA-TG-C-TTCTGTTATGTTAACGCG-TTGA-AT-G-AA-TTTGGATA--AAAAACG--ATAAATATTG-TTTG--TGT-AATTGT-TGA-TTT-GAAGATAATA-TA-GT-T-------------GTGAT---TGAAATATGTT
gi|2 : AAAAGTTAAGGATCA-TGA-TCTACAAATAATTTAA
gi|3 : gtataaccggaaagactgacttgcacgttatcgcatgcaaccttacgggcatccaataccgagtgaggttctagaccatcgtcagaccgtatgcccggtgctatggtggcgatgaccttattttgatggatgataatgctcgtcctcacagggctagagttgtaacggacttctggaaactgagactatcgagcgaatggactggccgagcctctctcccgattttaacccaatagaacatgcttgggacaagctacagcaggacgtttcagcccgtcaagtgcttccgagaaatcgtgaggaactttctgctgctttggtcgaggaatgaatcaactgccaaaatcttttcggagacttatccgaagcatgcagagacgttgtcgcgctgttattcaggcacgtgaggtcataccaaaatattgacttcatcaaatcattgttaaaacgattaattgtgaattttccgtcctttcccatgactaattttcattctgtttttagggggtaaatgttaaaagatgccttctgtatgttaacgcttcaatgaatttggataaaaacgataaatattgtttgtgtaattgttgattttgaagataatatagttgtgatgaaatatgttgttatttgttaaaaAGAAGTTAAGGATCA-TGA-TTTACAAATAATTTAAtgtccagta
gi|4 : taccgagatgagtttctagaccccttggtcagaccgtatgccggtgctatcagcgatgactttgttttgatggaagataatgctcgtcctcacagggctagagttgtaacgaactatctggaaactgagactatcgagcgaatggactggccgagcatctctcccgatcttaacgcgatataacatgattgggacaagctatagcaggtagtttcagcccctccagtgcttccgagaaatagtgaggaactgtttgctgctttggtcgaggaatggaatcaactgccacaaatcttcttctggagacttatccgaagtatgcagagacgttgtcgcggtgttatttaggcacgtggaggtcataccacatattgattcatcaaatcattgttaaaacaattaattgtaaattttccgtcctttaccatggataatttttattctgttttagggggtaacgttacaaagatgccttctccatgttaatgcttcaatgaatttggatagaaacgataaatattgtttgtgtaatcgttgatttggaagataatatagttgtgatgaaatatgttgttatttgttataaaAAAAGTTAAAGGTCA-TGA-CTTTTGAATAGTTAAAACAATA---TTGGTAG-TATATTTT--TGGAAATAAA-AACATTGATACTTCCTTCAGTATGTTATTGATT--GATTGTGTTTACCTGT-AAGATTGTGAAA--TGGGTtttgtcaagt
gi|8 : actggacaatAAAAGTTAAGGATCG-TGA-TTTTCGAATAGTTAAAA-AA-AAA-TTGGTAG-TATATTTT--TGGAAATAAA-TACATTGATACTTCCTTCAGTATGTTATTGATT--GATTGTGTTTACCTGT-AAGATTGTGAAA--TGCGTGCTTAATTGAATGCTTGGG--TG-AATTCGGACACAGGGT-CAAAAA--CAAAGTGTTTCAGGG-TAT---ACGGATAGTAAAGAAAATTTGTCATTTGAAGTTGTGTGGGACAT-TTTCGATATTTGTTGGTGACTTTGGAACATTTCAAGCCATGATACGTCATTTAACAGGTTTAGAA--GCAG-CTCAGGCCGTAGGT-AGGGTCCAATCTGGTGTTGTTCAGAGAACTGtacagggtatacgggtagtcaagaaaatgtgtcatttgaagtcctgtgggacattttcgttatttgttcgtgactttagaacatttcaagccatgagacgtcatttaacaggcgtggaagcagctcaggccgtaggtatggtccaatctggtattgttcagagaacagttgctgcacactttgatgtgtcccaaagtgccatttctcgattatgaaatcgcttccatcagactggtgttgttgctgagagacgatgttctcgtcatccgaggtcgactaccgctcgtcaggaccgttacttggccaatatgtctaatcgtcaaaggttccagagtactgccaagctcaatagatactttgaaacaacaacaggggtgcgcgtaacggcaaaaactgttcgtaacagactacacggtgccaacattagagctttccggccagaggtccgcccca
gi|5 : aatggacaaaAAAAGTTAAGGATCA-TGA-TTT
gi|6 : cgatcttaatccgatagaacatgcttggaaaagctacagaaggcagttacatatcccgtccagtgcttccgagaaatcgtgaggaacttctctgctgctttggtagaaggaatggacaatcaactgccgacaaaatcttctttcggagacttatccgaagcatgcagagacgttgtcgcgctgttattcaggcacgtgagatataccacatattgacttcattgtttaaacgattaattgtgaattttccgtccttaccatggctattttcattctgttttagggggtatgttacaaagattgccttctgtatgttaacgtttcaatagaatttgataaaaaacgataaatattgtgtgtgtaattgttgatttttaagataatatagttgtggatgacatatgttgttatttgttataaataaaattgtttgttAAAAGTTAAGGATCA-TGA-TTT-CGAATAGTTAAAA-AA-AATGTTGTTAG-TATATTTT--TG-AAATAAAATACAT-GATACTTCCTTCAGTATGT-ATTTTTTATGATTGTGTTTTCCTGTTAAGATTGTGAAA--TGCGTGCTTATTGGAATGCTTGGGGTTG-AATTAGGACAAAGGGTTCAAAAAACCAAAGTGTTTCAGGGATATTTTACGGGTAGTCAAGAAAATTTGTCATTTGAAGTTATGTGGGACAT-TTTCTATATTTGTTGGTGATTTTGGAACATTTCAAGCCATGAGACGTCATTTAACG---GCGGAAGGGCAAGCTCCAGCCGTAGGTAATGGTCCAATCTGGTGTTGTTCAGAGAACTttgtccagtata
gi|7 : atactggacaatAAAAGTTAAGGATCA-TGA-TTT-CGAATAGTTAAAA-AA-AATGTTGTTAG-TATATTTT--TG-AAATAAAATACAT-GATACTTCCTTCAGTATGT-ATTTTTTATGATTGTGTTTTCCTGTTAAGATTGTGAAA--TGCGTGCTTATTGGAATGCTTGGGGTTG-AATTAGGACAAAGGGTTCAAAAAACCAAAGTGTTTCAGGGATATTTTACGGGTAGTCAAGAAAATTTGTCATTTGAAGTTATGTGGGACAT-TTTCTATATTTGTTGGTGATTTTGGAACATTTCAAGCCATGAGACGTCATTTAACG---GCGGAAGGGCAAGCTCCAGCCGTAGGTAATGGTCCAATCTGGTGTTGTTCAGAGAtatacattgatacttccttcagtatgttattttt
gi|13 : tggacaatAAAATTTAAGGATCA-TGA-TTTTCGAATAGTTAAAA-AA-AA--TTGGTAG-TATATTTT--TGGAAATAAA-TACATTGATACTTCCTTCAGTATGTTATTGATT--GATTGTGTTTACCTGT-AAGATTGTGAAATGTGTGTGCTTAATTAAATGCTTGGG--TG-AATT-
gi|9 : actgggcaaAAAAGTTAAGGATCA-TGA-TTTACAAATAATTTAAcg
gi|11 : aatattgctagaaggctttgttattgattcccgcgtgaattttccgtcctttaccatggctaattttcattctgttttagggggtaatgttacaaagatgccttctgtatgttaacgcttcaatgaatttggataaaaacgataaatattgtttgtgtaattgttgattttgaagataatatagttgtgatgaaatatgttgttatttattataaaAAAAGTTAAGGATCA-TGA-TTTACAAATAATT-----TA-A---TTGATAA-CA-Atttgtccagta
gi|10 : accaaggctaattttcattctgttttagggggtaatgttacaaagatgccttctgtatgttaacgcttcaatgaatttggataaaaacgataaatattgtttgtgtaattgttgattttgtagataatatagttgtaatgaaatatgttgttatAAAAGTTAAGGATCA-TGA-TTTAAAAATAATTTAAtttgtccagt
gi|23 : tggacaAAAAGTTAGGGATCA-TGA-TTTTCGAATAGTTAAAA-AA-tttaccatggctaattttcattctgttttaggggtaatgttacaaagatgccttctgtatgttaacgcttcaatgaatttggataaaaacgataaatattgtttgtgtaattgtcgattttgaagataatatagttgtgatgaaatatgttgttatttgttataaattaaattatttgttaaatcatgatcttccttaactttttttgtccagt
gi|25 : ggacaaaaAAAAGTTAAGGATCA-TGA-TTT
gi|14 : tAAAAGTTACGGATCACTGACTTTTCAAATAATTAAtttgtccagtat
gi|24 : tgttaatacgcttcacatgcaatttggacaaaacggcataaaaattgttttggttgtaaattgtatgattttgagatattagtactatgtgagaaatgttgtatttgtataataaaAAAAGTTTAGGATCA-TGA-TTTACAAATtttgctccaggttt
gi|22 : A-AA-A---TTGGTAGGTA-TTTTTTTTGGAAATGAA-TACATTGATACTTCCttgtccagta
gi|21 : ATTGTGAAA--TGCGTGTTTAATTGAATGCTTTGG--TGAAATC-GGACACAGGGT-CAAAAA--CGAAGTGTTTC
gi|4 : GTTACAGGG-TAT---ACGGGTAGTCAAGAAAATGTGTCATTTGAAGTCCTGTGGGACAT-TTTCGTTATTTGTTCGTGACTTTAGAACATTTCAAGCCATGAGACGTCATTTAACAGGCGTGGAA--GCAG-CTCAGGCCGTAGGT-ATGGTCCAATCTGGTATTGTTCAGAGAACAGTTGCTGCACACTTTGATGTGTCCCAAAGTGCCATTTCTCG-ATTATGAAATCGCTTCCATCAGACTGGTGTTGTTGCTGAGAGACGATGTTCTCGTCATCCGAGGTCGACTACCGCTCGTCAGGACCGTTACTTGGCCAATATGTCTAATCGTCAAAGGTTCCAGAGTACTGCCAA-GCTCAATAGATACTTT-----GAAACAACAACAGGGGTGCGCGTAACGGCAAAAACTGTTCGTAACAGACTAC-ACGGTGCCAACATTAGAGCTTTCCGGCCAG-AGGTCCGCCCCA
gi|20 : actggacaataaaagttaaaggtcatgacttttgaatagttaaaacaatattggtagtatatttttggaaataaaaacattgatacttccttcagtatgttattgattgattgtgtttacctgtaagattgtgaaatggGAGTGCTGTC-AAGCTCAATAGAGACTTTAATTTGAAACAGCAGCAAGGGTGCGCGTAACGGCACAAACTGTTC
gi|16 : CAGTATTAACC-GGAAAAAAAGACTGACGTTGCATAACGTGTAT--CGCAAGGCAAC-CTTACGGGGTATCCGATTACCGA--TTAGGTTCCCTAGACCCGATCG-TCA-ACGATATTGC---GTGCTAT--CG
gi|2 : tgtatGTAT-AACCGGAAA-----GACTGAC-TTGCA---CGT---TATCGCA-TGCAAC-CTTACGGG-CATCCAAT-ACCGAG-TGAGGTTC--TAGACC--ATCGT-CAGACCGTA-TGCCCGGTGCTATGGTGGCGATGACCTTATTTTGATGGATGATAATGCTCGTCCTCACAGGGCTAGA-GTTGTAACGG--AC-T-TCTGGAAACTGAGACTATCGAGCGA-ATGGACTGGCCGAGCCTCTCTCCCGATTTTAA-C-CCAATAGAACATGCTTGGGA----C-----AAGCTACAGCAGGAC-GTTTCAG--CCCGTCAAGTGCTTCCGAG-AAATCGTGAGGAAC--TT---TCTGCTGCTTTGGTCGA-GGAATG-A--ATCAACTGCC-A-AAA-TCTTTT--CGGAGACTTATCCGAAGCATGCAGAGACGTTGTCGCGCTGTTATTCAGGCACGT-GAGGTC-ATACCAAAATATTGACTTCATC-AAATCATTG-TTAAAACGATTAATTGTGAATTTT-CCGTCCTTTCC-C-ATGACTAATTTTCATTCTGTTTTTAGGGGGTAAATGTTAA-AA-GA-TGCC-TTCTG-TATGTTAACGC--TTCA-AT-G-AA-TTTGGAT---AAAAACG--ATAAATATTG-TTTG--TGT-AATTGT-TGATTTT-GAAGATAATA-TA-GT-T-------------GTGA----TGAAATATGTT
gi|3 : T-ACCGAGATGAGTTTC--TAGACCCC-TTGGTCAGACCGTA-TGCC-GGTGCTAT--CAGCGATGACTTTGTTTTGATGGAAGATAATGCTCGTCCTCACAGGGCTAG-AGTTGTAACGA--AC-TATCTGGAAACTGAGACTATCGAGCGA-ATGGACTGGCCGAGCATCTCTCCCGATCTTAA-CGC-GATATAACATGATTGGGA----CAAGCTA-----TAGCAG-GTAGTTTCAG--CCCCTCCAGTGCTTCCGAGAAA-TAGTGAGGAACTGTT---T--GCTGCTTTGGTCGA-GGAATGGA--ATCAACTG-CCACAAA-TCTTCTTCTGGAGACTTATCCGAAGTATGCAGAGACGTTGTCGCGGTGTTATTTAGGCACGTGGAGGTC-ATACC-ACATATTGA-TTCATC-AAATCATTG-TTAAAACAATTAATTGTAAATTTT-CCGTCCTTT-ACC-ATGGATAATTTTTATTCTG-TTTTAGGGGGT-AACGTTACAAA-GA-TGCC-TTCT-CCATGTTAATGC--TTCA-AT-G-AA-TTTGGAT---AGAAACG--ATAAATATTG-TTTG--TGT-AATCGT-TGA-TTTGGAAGATAATA-TA-GT-T-------------GTGA----TGAAATATGTTgttatttgttaaaattaaattatttgtagatcatgatccttaactttttgtccagta
gi|5 : CGATCTTAATC-C-GATAGAACATGCTTGGAAAAGCT-----A-----CAGAAG-GCAGTTACATATCCCGTCCAGTGCTTCCGAG-AAATCGTGAGGAAC--TTCTCT--GCTGCTTTGGTAGAAGGAATGGACAATCAACTGCCGACAAAATCTTCTTTCGGAGACTTATCCGAAGCATGCAGAGACGTTGTCGCGCTGTTATTCAGGCACGT-GAGAT--ATACC-ACATATTGACT---------TCATTGTTT-AAACGATTAATTGTGAATTTT-CCGTCCTTA-C-C-ATGGCT-ATTTTCATTCTG-TTTTAGGGGGT--ATGTTACAAA-GATTGCC-TTCTG-TATGTTAACGT--TTCA-ATAG-AA-TTT-GATA--AAAAACG--ATAAATATTG-TGTG--TGT-AATTGT-TGATTTT-TAAGATAATA-TA-GT-T-------------GTGGA---TGACATATGTTgttatttgttataaattaaattatttgtaaatcatgatccttaacttcttttgtcaagt
gi|27 : A-TCTTCTGCCGGAGACTTATCCGAAGCATGTAgttatttgttataaataaaattgtttgttaaatcatgatccttaacttttttgtccagtata
gi|10 : ATCATGA-TT-TAAAAA-TAATT-T-AA-TTTACC------------ATGGCTAATTTTCATTCTG-TTTTAGGGG-T-AATGTTAC-AAAGA-TG-CCTTCTGT-ATGTTAACGC--TTCA-AT-G-AA-TTTGGATA--AAA-ACG--ATAAATATTG-TTTG--TGT-AATTGT-CGATTTT-GAAGATAATA-TA-GT-T-------------GTGA----TGAAATATGTT
gi|9 : tggacaaaaagttaaggGTGAA-TTTTCCGTCCTTT-A-CCATGGCTAATTTTCATTCTG-TTTTAGGGGGT-AATGTTACAAA-GA-TGCC-TTCTG-TATGTTAACGC--TTCA-AT-G-AA-TTTGGAT---AAAAACG--ATAAATATTG-TTTG--TGT-AATTGT-TGATTTT-GAAGATAATA-TA-GT-T-------------GTGA----TGAAATATGTTgttatttgttataaattaaattatttgttaaatcatgatcttccttaactttttttgtccagt
gi|12 : aatattgctagaaggctttgttattgattcccgcTGGCTAACTTACATTCTG-TTTTAGGGGGT-ATTGTTAC-AA-AAATG-AATTCTGT-ATGTTAACGCT-TT-A-AT-A-AA-TTTGGATA--AAA-ACG--ATAAATATTG-TTTG--TGT-AATTGT-TGATTTT-GAAGATAATA-CA-GT-T-------------GTGA----TGAAATATGTTgttatttattataaattaaattatttgtaaatcatgatccttaactttttttgtccagta
gi|11 : GGCTAATTTTCATTCTG-TTTTAGGGGGT-AATGTTACAAA-GA-TGCC-TTCTG-TATGTTAACGC--TTCA-AT-G-AA-TTTGGAT---AAAAACG--ATAAATATTG-TTTG--TGT-AATTGT-TGATTTT-GTAGATAATA-TA-GT-T-------------GTAA----TGAAATATGTTgttatttgttatagattaaattatttctaaatcatgatccttaacattttttgtccagta
gi|14 : accaaTGTTAATACGCTTCACAT-GCAA-TTTGGAC----AAAACGGCATAAAAATTGTTTTGGTTGTAAATTGTATGA-TTT-TGAGATATTAGTA-CTAT-------------GTGA-----GAAATGTgttatttgttatcaattaaattatttgtaaatcatgatccttaactttttttgtccagt
gi|15 : A-AT-G-AACTTTGGAAATTAAAAACG--ATAAATATTG-TT----AGT-AATTGT-TGA-TTT-GA--GTAATA-TACGT-TCCTAAAAACATCAATGATGAATGAAATATGTTtgtatttgtataataaattaattatttgaaaagtcagtgatccgtaactttttttgctccaggttt
4 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|17 ): TGTTTTTGAAGATAACATAGTTGTGGTGAAATGTATTGTTATTTGTTATGAATTAAATTATTTGTAAATCATGATCCTTAATATTTTTGTCAAATAT
Unaligned ( gi|18 ): AATTGTTGATTGAAAATGAATATGTTGTGAGAAAATGTTGTTTTTGTATAAATTAAATTATGTCAACCATGATCCCTTAACTATTTTCTGTCCAGTA
Unaligned ( gi|19 ): GAAATATGTTGTTATTTGTTATCAATTAAAGAAGAAGGTACACTTTGTAAATCATGATCCATTTTTTTTTTGTCCAG
Unaligned ( gi|26 ): TCATGATCCTTAACTTTTTGTCCAGTATATTAC
Alignments
lowQualScore : 11 111111 1 22 11 33 1 11 22 2 333 111 22 11 11 2 1 1 1 333 55555 1 2 22 2 44444 2 777777777 22 1 2 1 22 11 22 111 1 11 11 2 11 1 1 1 1 1 55555555555 11 222222222 1 11 1 1 2 11 1 11 2222222 22222 1111 222
lowQualScore : 22 666666 5 5 4 1 5 7 22 44 77 00 0 1 11 55 0 111 1 8 1 333 00 99 5 555 2 6 88 0 7 0 5 2 2 2 5 5 3 7 0 000 1 11111 0 2 1 0 33 3 6 33333 3 555555555 44 3 3 0 22 33 22 111 2 0 22 33 0 0 1 3 7 88 3 7 7 3 6 1 0 0 0 66666666666 0 33 2 3 777777777 0 2 33 0 0 2 8 5 0 22 0 2 22 5 6 6666666 0 00000 0 8888 5 5 5 5 55 4 4 4 4 4 555 55 4 55 4 3 3 3 3 4 4
lowQualScore : .. ...... . . . . . . .. .. .. .. . . .. .. . ... . . . ... .. .. . ... . . .. . . . . . . . . . . . . ... . ..... . . . . .. . . ..... . ......... .. . . . .. .. .. ... . . .. .. . . . . . .. . . . . . . . . . ........... . .. . . ......... . . .. . . . . . . .. . . .. . . ....... . ..... . .... . . . . .. . . . . . ... .. . .. . . . . . . .
lowQualScore : 44 111111 7 7 3 4 0 3 77 77 99 33 4 0 44 44 4 222 8 0 0 222 00 66 0 444 5 7 33 7 3 0 5 5 5 5 0 5 0 3 7 000 0 77777 7 0 0 0 00 7 7 77777 3 777777777 77 3 3 0 55 88 55 000 5 0 55 88 7 7 0 7 3 33 3 3 3 3 7 0 0 0 0 22222222222 2 88 5 2 000000000 0 5 88 0 0 5 0 6 0 55 0 5 55 0 0 0000000 8 00000 8 0000 0 0 0 0 55 0 0 0 0 0 999 55 0 55 0 6 6 6 6 0 0
consensus : AAAAGTTAAGGATCATGATTT-TCGAATAGTTAAAAAAA-A-T--TGGTAG-TATATTTT-TGGAAATAAA-TACATTGATACTTCCTTCAGTATGTTATTGATT-TGATTGTGTTTACCTGTTAAGATTGTGAAA--TGCGTGCTTAATTGAATGCTTGGG--TGAATTNGGACACAGGGTTCAAAAAACCAAAGTGTTTCAGGGATATTTTACGGGTAGTCAAGAAAATTTGTCATTTGAAGTTGTGTGGGACAT-TTTCGATATTTGTTGGTGACTTTGGAACATTTCAAGCCATGAGACGTCATTTAACGGGCGCGGAAGGGCAAGCTCAGGCCGTAGGTAATGGTCCAATCTGGTGTTGTTCAGAGAACTGTTGCCGCACACTTTGATGCGTCC--CAAAGTGTCATTTCTCGAATTATGGAATCGCTTCCATCAGACTGGTGTTGTTGCTGAGANACNACGTTCTNGTCGTCCGAGGTCGACTACCGCTCGTCAGGACCGTTACTTGGCCAATATGTCTAANCGTCAAAGGTTCCAGAGTGCTGTC-AAGCTCAATAGAGAC-----TTTGAAACAGCAACAGGGGTGCGCGTAACGGCACAAACTGTTCGTAACAGACTACAACGGTGCCAACATTAGAGCTTTCCGGCCAGCNGGTCCGCCCCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAGTAT-AACCGG-AA--AAAGACTGAC-TTGCA---CGT---TATCGCA-GGCAAC-CTTACGGG-CATCCGA-TACCGAGATGAGGTT--CTAGACCC-ATCG-T-CAGACCGTA-TGCC-GGTGCTAT--CGGCGATGACTTTATTTTGATGGATGATAATGCTCGTCCTCACAGGGCTAGA-GTTGTAACGG--AC-TATCTGGAAACTGAGACTATCGAGCGA-ATGGACTGGCCGAGCNTCTCTCCCGATCTTAA-C-C-GATAGAACATGCTTGGGA----CAAGCTACAGCAGGCAGTTTCAG--CCCGTCCAGTGCTTCCGAGAAATCGTGAGGAACT--T---T--GCTGCTTTGGTCGA-GGAATGGA--ATCAACTG-CC-ACAAA-TCTTCTTCCGGAGACTTATCCGAAGCATGCAGAGACGTTGTCGCGCTGTTATTCAGGCACGTGGAGGTC-ATACC-ACATATTGACTTCATC-AAATCATTGTTAAAACG-------ATTAATT-----GTGAATTTTCCGTCCTTT-NC-ATGGCTAATTTTCATTCTG-TTTTAGGGGGT-AATGTTACAAAGA-TGCCTTCTG-TATGTTAA--CGC-TTCA-AT-G-AA-TTTGGATA--AAAAACG--ATAAATATTG-TTTG--TGT-AATTGT-TGATTTTGAAGATAATA-TA-GT-TGT-GA-TGAAATATGTT
Reference ( family-62 ) : AAAAGTTAAGGATCATGATTT-NCGAATAGTTAAAAAAA-A-T--TGGTAG-TATATTTT-TGGAAATAAA-TACATTGATACTTCCTTCAGTATGTTATTGATTATGATTGTGTTTACCTGTTAAGATTGTGAAA--TGCGTGCTTAATTGAATGCTTGGGGTTGAATTAGGACANAGGGTTCAAAAAACCAAAGTGTTTCAGGGATATTTTACGGGTAGTCAAGAAAATTTGTCATTTGAAGTTATGTGGGACAT-TTTCNATATTTGTTGGTGACTTTGGAACATTTCAAGCCATGAGACGTCATTTAACGGGCGCGGAAGGGCAGGCTCCGGCCGTAGGTAATGGTCCAATCTGGTGTTGTTCAGAGAACTGTTGCTGCACACTTTGATGTGTCC--CAAAGTGCCATTTCTCG-ATTATGAAATCGCTTCCATCAGACTGGTGTTGTTGCTGAGAGACGATGTTCTCGTCATCCGAGGTCGACTACCGCTCGTCAGGACCGTTACTTGGCCAATATGTCTAATCGTCAAAGGTTCCAGAGTGCTGCCAAAGCTCAATAGANACTTTAATTTGAAACAGCAGCAGGGGTGCGCGTAACGGCANAAACTGTTCGTAACAGACTAC-ACGGTGCCAACATTAGAGCTTTCCGGCCAG-AGGTCCGCCCCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAGTATTAACCGGGAAAAAAAGACTGACGTTGCATAACGTGTATATCGCAANGCAAC-CTTACGGGGCATCCGA-TACCGAG-TGAGGTT--CTAGACCC-ATCG-T-CAGACCGTA-TGCC-GGTGCTAT--CGGCGATGACCTTGTTTTGATGGANGATAATGCTCGTCCTCACAGGGCTAGAAGTTGTAACGG--AC-TATCTGGAAACTGAGACTATCGAGCGA-ATGGACTGGCCGAGCNTCTCTCCCGATCTTAA-C-C-GATAGAACATGCTTGGGA----CA-----CAGCAGGCAGTTTCAG--CCCGTCCAGTGCTTCCGAGAAATCGTGAGGAACT--T---T--GCTGCTTTGGTCGA-GGAATGGA--ATCAACTG-CC-ACAAA-TCTTCTTCCGGAGACTTATCCGAAGCATGCAGAGACGTTGTCGCGCTGTTATTCAGGCACGT-GAGGTC-ATACC-ACATATTGACTTCATC-AAATCATTGTTAAAACG-------ATTAATT-----GTGAATTTTCCGTCCTTT-NC-ATGGCTAATTTTCATTCTG-TTTTAGGGGGT-AATGTTACAAAGA-TGCCTTCTG-TATGTTAA--CGC-TTCA-AT-G-AA-TTTGGATA--AAAAACG--ATAAATATTG-TTTG--TGT-AATTGT-TGATTTTGAAGATAATA-TA-GT-TGT-GA-TGAAATATGTT
gi|1 : AAAAGTTAAGGATCATGATTT-TCGAATAGTTAAAAAAA---T--TGGTAG-TA-ATTTT-TGGAAATAAA-TACATTGATACTTCCTTCAGTATGTTATTGATT--GATTGTGTTTACCTGT-AAGATTGTGAAA--TGCGTCCTTAATTGAATGCTTGGG--TGAATT-GGACACAGGGT-CAAAAA--CAAAGTGTTTCAGGG-TAT---ACGGGTAGTCAAAAAAAATTGTCATTTGAAGTTGTGTGGGACATGTTTCGATATTTGTTGGTGACTTTGGAACATTTCAAGCCATAGGACGTCATTTAACGGGCGTGGAA--GCA-ACTCAGGCCGTAGGT-ATGGTTCAATCTGGTGTTGTTCAGAGAACTGTTGCCGCAAACTTTAATGTGTCC--AAAAGTGTCA-TTCTCGAATTA-GGAATCGCTTCTATCAGACTGGTGTTGTTGCTGAGATACCACGTTCTGGTCGTCCGAGGT-AACTACCGCTCGTCAGGACCGTTACTTGGCCAATATGTC-AAGCGTCAAAGGTTCCAGAGTGC-GTC--AGCTCAATAGAGAC-----TTTGAAACAGCAACA-GGGTGCGCGTAACGGCACAAACTGTTCGTAACAGACTACAACGGTGCCAACATTAGAGCTTTCCGGCCAGCCGGTCCGCCCCA
gi|1 : CAGTAT-AAC--GGAA-----GACTGAC-TTGCA---CAT-----TCGCA-GGCAACTCTTACGGG-CATCCGA-TACCGAGATGAGGTT--CTAGACCCCATCG-TTCAGACCGTA-TGCC-GGTGCTAT--CGGCGATGACTTTATTTTGATGGATGATAATGCTCGTCCTCACAGGGCTAGAAGTTG-AACGGGTACGTATCTGGAAAATG-GACTATCGAGCGAGATGGA-TGGCCGAGCTCTTCTCCCGATCTTAA-C-C-GATAGAACATGCTTGGGA----CA-----CAGCAGACAGTTTCAG--CCCGTCCAGT-CTTCCGAG-AATCGTGAGGAACT--T---T--GCTGCTTTGGTCGA-GGAATGGA--ATCAACTGCCC-ACAAA-TCTTCTTCCGGAGACTTATCCGAAGCATGCAGAGACGTTGTCGCGCTGTTATTCAGGCAGGTGGAGGTCAATACC-ACATATTGACTTCATCAAAATCATTGTT-AAACG-------A-TAATT-----GTGAA-TTTCCGTCCTTT-AT-ATGGCTAATTTTCATTCTG-TTTTAGGGGGT-AATGTTAC-AAGA-TG-CTTCTGTTATGTTAA--CGCGTTGA-AT-G-AA-TTTGGATA--AAAAACG--ATAAATATTG-TTTG--TGT-AATTGT-TGA-TTTGAAGATAATA-TA-GT-TGT-GATTGAAATATGTTaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncagtataacggaagactgacttgcacattcgcaggcaactcttacgggcatccgataccgagatgaggttctagaccccatcgttcagaccgtatgccggtgctatcggcgatgactttattttgatggatgataatgctcgtcctcacagggctagaagttgaacgggtacgtatctggaaaatggactatcgagcgagatggatggccgagctcttctcccgatcttaaccgatagaacatgcttgggacacagcagacagtttcagcccgtccagtcttccgagaatcgtgaggaactttgctgctttggtcgaggaatggaatcaactgcccacaaatcttcttccggagacttatccgaagcatgcagagacgttgtcgcgctgttattcaggcaggtggaggtcaataccacatattgacttcatcaaaatcattgttaaacgataattgtgaatttccgtcctttatatggctaattttcattctgttttagggggtaatgttacaagatgcttctgttatgttaacgcgttgaatgaatttggataaaaaacgataaatattgtttgtgtaattgttgatttgaagataatatagttgtgattgaaatatgtt
gi|10 : aaaagttaaggatcatgattttcgaatagttaaaaaaattggtagtaatttttggaaataaatacattgatacttccttcagtatgttattgattgattgtgtttacctgtaagattgtgaaatgcgtccttaattgaatgcttgggtgaattggacacagggtcaaaaacaaagtgtttcagggtatacgggtagtcaaaaaaaattgtcatttgaagttgtgtgggacatgtttcgatatttgttggtgactttggaacatttcaagccataggacgtcatttaacgggcgtggaagcaactcaggccgtaggtatggttcaatctggtgttgttcagagaactgttgccgcaaactttaatgtgtccaaaagtgtcattctcgaattaggaatcgcttctatcagactggtgttgttgctgagataccacgttctggtcgtccgaggtaactaccgctcgtcaggaccgttacttggccaatatgtcaagcgtcaaaggttccagagtgcgtcagctcaatagagactttgaaacagcaacagggtgcgcgtaacggcacaaactgttcgtaacagactacaacggtgccaacattagagctttccggccagccggtccgccccaaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTTT-ACCATGGCTAATTTTCATTCTG-TTTTAGGGG-T-AATGTTACAAAGA-TGCCTTCTG-TATGTTAA--CGC-TTCA-AT-G-AA-TTTGGATA--AAA-ACG--ATAAATATTG-TTTG--TGT-AATTGT-CGATTTTGAAGATAATA-TA-GT-TGT-GA-TGAAATATGTT
gi|11 : tggacaaaaagttaaggatcatgatttaaaaataatttaaC-AAGGCTAATTTTCATTCTG-TTTTAGGGGGT-AATGTTACAAAGA-TGCCTTCTG-TATGTTAA--CGC-TTCA-AT-G-AA-TTTGGAT---AAAAACG--ATAAATATTG-TTTG--TGT-AATTGT-TGATTTTGTAGATAATA-TA-GT-TGT-AA-TGAAATATGTTgttatttgttataaattaaattatttgttaaatcatgatcttccttaactttttttgtccagt
gi|12 : acTGGCTAACTTACATTCTG-TTTTAGGGGGT-ATTGTTACAAAAA-TGAATTCTG-TATGTTAA--CGC-TTTA-AT-A-AA-TTTGGAT---AAAAACG--ATAAATATTG-TTTG--TGT-AATTGT-TGATTTTGAAGATAATA-CA-GT-TGT-GA-TGAAATATGTTgttatttgttatcaattaaattatttgtaaatcatgatccttaactttttttgtccagt
gi|13 : AAAATTTAAGGATCATGATTT-TCGAATAGTTAAAAAAA-A-T--TGGTAG-TATATTTT-TGGAAATAAA-TACATTGATACTTCCTTCAGTATGTTATTGAT--TGATTGTGTTTACCTG-TAAGATTGTGAAATGTGTGTGCTTAATTAAATGCTTGGG--TGAATTgttatttgttatagattaaattatttctaaatcatgatccttaacattttttgtccagta
gi|14 : actgggcaaTGTTAATACGC-TTCACAT-GCAA-TTTGGAC----AAAACGGCATAAAAATTGTTTTGGTTGTAAATTGTATGATTTTG-AGATATTAGTA-CTATGT-GA--GAAATGTcg
gi|15 : --CGT-TCCA-AT-G-AACTTTGGAAATTAAAAACG--ATAAATATTG-TT----AGT-AATTGT-TGA-TTTGA--GTAATA-TACGT-Ttgtatttgtataataaattaattatttgaaaagtcagtgatccgtaactttttttgctccaggttt
gi|16 : acCAGTATTAACCGG-AAAAAAAGACTGACGTTGCATAACGTG--TATCGCAAGGCAAC-CTTACGGGGTATCCGATTACCGA--TTAGGTTCCCTAGACCCGATCG-T-CA-ACGATATTGC---GTGCTAT--CGcctaaaaacatcaatgatgaatgaaatatgttgttattttataattaaatcatttgtatcatgaatcgcttaacttttttgcacatcagt
gi|17 : tgtat-TGTTTTTGAAGATAACA-TA-GT-TGT-GG-TGAAATGTATT
gi|2 : GTAT-AACCGG-----AAAGACTGAC-TTGCA---CGT---TATCGCA-TGCAAC-CTTACGGG-CATCCAA-TACCGAG-TGAGGTT--CTAGACC--ATCG-T-CAGACCGTA-TGCCCGGTGCTATGGTGGCGATGACCTTATTTTGATGGATGATAATGCTCGTCCTCACAGGGCTAGA-GTTGTAACGG--AC-T-TCTGGAAACTGAGACTATCGAGCGA-ATGGACTGGCCGAGCCTCTCTCCCGATTTTAA-C-CCAATAGAACATGCTTGGGA----CAAGCTACAGCAGGACGTTTCAG--CCCGTCAAGTGCTTCCGAGAAATCGTGAGGAACT--T---TCTGCTGCTTTGGTCGA-GGAATG-A--ATCAACTG-CC-A-AAA-TCTTTT--CGGAGACTTATCCGAAGCATGCAGAGACGTTGTCGCGCTGTTATTCAGGCACGT-GAGGTC-ATACCAAAATATTGACTTCATC-AAATCATTGTTAAAACG-------ATTAATT-----GTGAATTTTCCGTCCTTTCCC-ATGACTAATTTTCATTCTGTTTTTAGGGGGTAAATGTTA-AAAGA-TGCCTTCTG-TATGTTAA--CGC-TTCA-AT-G-AA-TTTGGAT---AAAAACG--ATAAATATTG-TTTG--TGT-AATTGT-TGATTTTGAAGATAATA-TA-GT-TGT-GA-TGAAATATGTTgttatttgttatgaattaaattatttgtaaatcatgatccttaatatttttgtcaaatat
gi|20 : GAGTGCTGTCAA-GCTCAATAGAGACTTTAATTTGAAACAGCAGCAAGGGTGCGCGTAACGGCACAAACTGTTCgttatttgttaaaattaaattatttgtagatcatgatccttaactttttgtccagta
gi|21 : ATTGTGAAA--TGCGTGTTTAATTGAATGCTTTGG--TGAAATCGGACACAGGG-TCAAAAA--CGAAGTGTTTC
gi|22 : AAA-A-T--TGGTAGGTATTTTTTTTGGAAATGAA-TACATTGATACTTCC
gi|23 : AAAAGTTAGGGATCATGATTT-TCGAATAGTTAAAAAA
gi|24 : ggacaaaaAAAAGTTTAGGATCATGATTT-ACAAAT
gi|25 : AAAAGTTAAGGATCATGATTT-ttgtccagta
gi|27 : tA-TCTTCTGCCGGAGACTTATCCGAAGCATGTAtttgtccagtat
gi|3 : -TACCGAGATGAGTTT--CTAGACCC-CTTGGT-CAGACCGTA-TGCC-GGTGCTAT--CAGCGATGACTTTGTTTTGATGGAAGATAATGCTCGTCCTCACAGGGCTAGA-GTTGTAACGA--AC-TATCTGGAAACTGAGACTATCGAGCGA-ATGGACTGGCCGAGCATCTCTCCCGATCTTAA-CGC-GATATAACATGATTGGGA----CAAGCTATAGCAGGTAGTTTCAG--CCCCTCCAGTGCTTCCGAGAAATAGTGAGGAACTGTT---T--GCTGCTTTGGTCGA-GGAATGGA--ATCAACTG-CC-ACAAA-TCTTCTTCTGGAGACTTATCCGAAGTATGCAGAGACGTTGTCGCGGTGTTATTTAGGCACGTGGAGGTC-ATACC-ACATATTGA-TTCATC-AAATCATTGTTAAAACA-------ATTAATT-----GTAAATTTTCCGTCCTTTACC-ATGGATAATTTTTATTCTG-TTTTAGGGGGT-AACGTTACAAAGA-TGCCTTCTC-CATGTTAA--TGC-TTCA-AT-G-AA-TTTGGAT---AGAAACG--ATAAATATTG-TTTG--TGT-AATCGT-TGATTTGGAAGATAATA-TA-GT-TGT-GA-TGAAATATGTT
gi|4 : AAAAGTTAAAGGTCATGACTT-TTGAATAGTTAAAACAATA-T--TGGTAG-TATATTTT-TGGAAATAAA-AACATTGATACTTCCTTCAGTATGTTATTGAT--TGATTGTGTTTACCTG-TAAGATTGTGAAA--TGGGTgttatttgttataaattaaattatttgtaaatcatgatccttaacttcttttgtcaagt
gi|4 : actggacaatGTTACAGGG-TAT---ACGGGTAGTCAAGAAAATGTGTCATTTGAAGTCCTGTGGGACAT-TTTCGTTATTTGTTCGTGACTTTAGAACATTTCAAGCCATGAGACGTCATTTAACAGGCGTGGAAG--CAG-CTCAGGCCGTAGGTA-TGGTCCAATCTGGTATTGTTCAGAGAACAGTTGCTGCACACTTTGATGTGTCC--CAAAGTGCCATTTCTCG-ATTATGAAATCGCTTCCATCAGACTGGTGTTGTTGCTGAGAGACGATGTTCTCGTCATCCGAGGTCGACTACCGCTCGTCAGGACCGTTACTTGGCCAATATGTCTAATCGTCAAAGGTTCCAGAGTACTGCC-AAGCTCAATAGATAC-----TTTGAAACAACAACAGGGGTGCGCGTAACGGCAAAAACTGTTCGTAACAGACTAC-ACGGTGCCAACATTAGAGCTTTCCGGCCAG-AGGTCCGCCCCAtacagggtatacgggtagtcaagaaaatgtgtcatttgaagtcctgtgggacattttcgttatttgttcgtgactttagaacatttcaagccatgagacgtcatttaacaggcgtggaagcagctcaggccgtaggtatggtccaatctggtattgttcagagaacagttgctgcacactttgatgtgtcccaaagtgccatttctcgattatgaaatcgcttccatcagactggtgttgttgctgagagacgatgttctcgtcatccgaggtcgactaccgctcgtcaggaccgttacttggccaatatgtctaatcgtcaaaggttccagagtactgccaagctcaatagatactttgaaacaacaacaggggtgcgcgtaacggcaaaaactgttcgtaacagactacacggtgccaacattagagctttccggccagaggtccgcccca
gi|5 : actggacaataaaagttaaaggtcatgacttttgaatagttaaaacaatattggtagtatatttttggaaataaaaacattgatacttccttcagtatgttattgattgattgtgtttacctgtaagattgtgaaatggCGATCTTAATC-C-GATAGAACATGCTTGGAAAAGCTA-----CAGAAGGCAGTTACATATCCCGTCCAGTGCTTCCGAGAAATCGTGAGGAACT--TCTCT--GCTGCTTTGGTAGAAGGAATGGACAATCAACTG-CCGACAAAATCTTCTTTCGGAGACTTATCCGAAGCATGCAGAGACGTTGTCGCGCTGTTATTCAGGCACGT-GAGAT--ATACC-ACATATTGACTTCAT---------TGTTTAAACG-------ATTAATT-----GTGAATTTTCCGTCCTTA-CC-ATGGCTA-TTTTCATTCTG-TTTTAGGGGGT--ATGTTACAAAGATTGCCTTCTG-TATGTTAA--CGT-TTCA-ATAG-AA-TTT-GATA--AAAAACG--ATAAATATTG-TGTG--TGT-AATTGT-TGATTTTTAAGATAATA-TA-GT-TGTGGA-TGACATATGTT
gi|5 : AAAAGTTAAGGATCATGATTTAACAAACAATTgttatttgttataaataaaattgtttgttaaatcatgatccttaacttttttgtccagtata
gi|6 : cgatcttaatccgatagaacatgcttggaaaagctacagaaggcagttacatatcccgtccagtgcttccgagaaatcgtgaggaacttctctgctgctttggtagaaggaatggacaatcaactgccgacaaaatcttctttcggagacttatccgaagcatgcagagacgttgtcgcgctgttattcaggcacgtgagatataccacatattgacttcattgtttaaacgattaattgtgaattttccgtccttaccatggctattttcattctgttttagggggtatgttacaaagattgccttctgtatgttaacgtttcaatagaatttgataaaaaacgataaatattgtgtgtgtaattgttgatttttaagataatatagttgtggatgacatatgttgttatttgttataaataaAAAAGTTAAGGATCATGATTT--CGAATAGTTAAAAAAA-A-TGTTGTTAG-TATATTTT-TG-AAATAAAATACAT-GATACTTCCTTCAGTATGT-ATTTTTTATGATTGTGTTTTCCTGTTAAGATTGTGAAA--TGCGTGCTTATTGGAATGCTTGGGGTTGAATTAGGACAAAGGGTTCAAAAAACCAAAGTGTTTCAGGGATATTTTACGGGTAGTCAAGAAAATTTGTCATTTGAAGTTATGTGGGACAT-TTTCTATATTTGTTGGTGATTTTGGAACATTTCAAGCCATGAGACGTCATTTAACG---GCGGAAGGGCAAGCTCCAGCCGTAGGTAATGGTCCAATCTGGTGTTGTTCAGAGAACT-----TATACA--TTGATACTTCCTTCAGTATGTTATTTTTttgtccagtata
gi|7 : atactggacaatAAAAGTTAAGGATCATGATTT--CGAATAGTTAAAAAAA-A-TGTTGTTAG-TATATTTT-TG-AAATAAAATACAT-GATACTTCCTTCAGTATGT-ATTTTTTATGATTGTGTTTTCCTGTTAAGATTGTGAAA--TGCGTGCTTATTGGAATGCTTGGGGTTGAATTAGGACAAAGGGTTCAAAAAACCAAAGTGTTTCAGGGATATTTTACGGGTAGTCAAGAAAATTTGTCATTTGAAGTTATGTGGGACAT-TTTCTATATTTGTTGGTGATTTTGGAACATTTCAAGCCATGAGACGTCATTTAACG---GCGGAAGGGCAAGCTCCAGCCGTAGGTAATGGTCCAATCTGGTGTTGTTCAGAGA
gi|8 : tggacaatAAAAGTTAAGGATCGTGATTT-TCGAATAGTTAAAAAAA-AAT--TGGTAG-TATATTTT-TGGAAATAAA-TACATTGATACTTCCTTCAGTATGTTATTGATT--GATTGTGTTTACCTGT-AAGATTGTGAAA--TGCGTGCTTAATTGAATGCTTGGG--TGAATTCGGACACAGGGT-CAAAAA--CAAAGTGTTTCAGGG-TAT---ACGGATAGTAAAGAAAATTTGTCATTTGAAGTTGTGTGGGACAT-TTTCGATATTTGTTGGTGACTTTGGAACATTTCAAGCCATGATACGTCATTTAACAGGTTTAGAA--GCA-GCTCAGGCCGTAGGTAG-GGTCCAATCTGGTGTTGTTCAGAGAACTG
gi|9 : aatggacaaaAAT-ATTGCTAGAAGGCTTTGTTATTGATTCCCGCGTGAATTTTCCGTCCTTT-ACCATGGCTAATTTTCATTCTG-TTTTAGGGGGT-AATGTTACAAAGA-TGCCTTCTG-TATGTTAA--CGC-TTCA-AT-G-AA-TTTGGAT---AAAAACG--ATAAATATTG-TTTG--TGT-AATTGT-TGATTTTGAAGATAATA-TA-GT-TGT-GA-TGAAATATGTT
gi|9 : AAAAGTTAAGGATCATGATTT-ACAAATAATTTAAgttatttattataaattaaattatttgtaaatcatgatccttaactttttttgtccagta
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|18 ): AATTGTTGATTGAAAATGAATATGTTGTGAGAAAATGTTGTTTTTGTATAAATTAAATTATGTCAACCATGATCCCTTAACTATTTTCTGTCCAGTA
Unaligned ( gi|19 ): GAAATATGTTGTTATTTGTTATCAATTAAAGAAGAAGGTACACTTTGTAAATCATGATCCATTTTTTTTTTGTCCAG
Unaligned ( gi|26 ): TCATGATCCTTAACTTTTTGTCCAGTATATTAC
Alignments
lowQualScore : 111111 1 22 11 11 11 22 2 333 111 1 11 11 1 1 1 1 33333 1 11 1 44444 1 222 1 1 1 1 1 11 22 111 1 11 11 1 11 1 1 1 1 1 11 222222222 1 11 2 1 1 2222222 22222 1111 222
lowQualScore : 3 3 4 666666 5 5 4 1 5 7 7 00 44 77 88 7 11 55 0 111 1 8 333 5 11 0 44 2 3 3 0 88 7 5 5 1 1 1 5 5 1 7 7 33333 6 5 66 3 6 88888 3 333 3 7 3 3 3 0 2 3 33 22 111 2 0 22 33 3 7 88 3 7 7 3 6 1 0 0 0 2 3 0 33 2 3 777777777 0 2 33 0 2 8 5 55 2 0 0 2 2 888 0 6666666 0 00000 0 8888 5 5 5 5 55 4 4 4 4 4 555 55 4 55 4 3 3 3 3 4 4
lowQualScore : . . . ...... . . . . . . . .. .. .. .. . .. .. . ... . . ... . .. . .. . . . . .. . . . . . . . . . . . ..... . . .. . . ..... . ... . . . . . . . . .. .. ... . . .. .. . . .. . . . . . . . . . . . . .. . . ......... . . .. . . . . .. . . . . . ... . ....... . ..... . .... . . . . .. . . . . . ... .. . .. . . . . . . .
lowQualScore : 6 6 8 111111 7 7 3 4 0 3 3 77 77 99 33 5 44 44 4 222 4 0 222 0 66 6 44 5 7 7 7 33 3 5 5 0 0 0 0 5 0 3 3 33333 7 5 00 3 7 00000 3 333 3 3 3 3 3 0 5 2 88 55 000 5 0 55 88 3 3 33 3 3 3 3 7 0 0 0 0 5 2 2 88 5 2 000000000 0 5 88 0 5 0 6 00 5 0 0 5 5 888 8 0000000 8 00000 8 0000 0 0 0 0 55 0 0 0 0 0 999 55 0 55 0 6 6 6 6 0 0
consensus : AAAAGTTAAGGATCA-TGA-TTTTCGAATAGTTAAAAAAA-A-T--TGGTAG-TATATTTT-TGGAAATAAA-TACATTGATACTTCCTTCAGTATGTTATTGATT-TGATTGTGTTTACCTGTTAAGATTGTGAAA--TGCGTGCTTAATTGAATGCTTGGG--TGAATTCGGACACAGGGTTCAAAAAACCAAAGTGTTTCAGGGATATTTTACGGGTAGTCAAGAAAATTTGTCATTTGAAGTTGTGTGGGACAT-TTTCGATATTTGTTGGTGACTTTGGAACATTTCAAGCCATGAGACGTCATTTAACGGGCGCGGAAGGGCAAGCTCAGGCCGTAGGTAATGGTCCAATCTGGTGTTGTTCAGAGAACTGTTGCCGCANACTTTGATGCGTCC--CAAAGTGTCATTTCTCGAATTATGGAATCGCTTCCATCAGACTGGTGTTGTTGCTGAGANACNACGTTCTNGTCGTCCGAGGTCGACTACCGCTCGTCAGGACCGTTACTTGGCCAATATGTCTAANCGTCAAAGGTTCCAGAGTGCTGTCAAGCTCAATAGAGACTTT-----GAAACAGCAACAGGGGTGCGCGTAACGGCACAAACTGTTCGTAACAGACTACAACGGTGCCAACATTAGAGCTTTCCGGCCAGCNGGTCCGCCCCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAGTAT-AACCGGAAA----GACTGAC-TTGCA---CGT-TATCGCA-GGCAAC-CTTAC-GGGCATCCGA-TACCGAGATGAGGTT--CTAGACCC-ATCG-T-CAGACCGTA-TGCC-GGTGCTAT--CGGCGATGACTTTATTTTGATGGATGATAATGCTCGTCCTCACAGGGCTAGA-GTTGTAACGG--AC-TATCTGGAAACTGAGACTATCGAGCGA-ATGGACTGGCCGAGCNTCTCTCCCGATCTTAA-C-C-GATAGAACATGCTTGGGACAAGCTACAGCAGGCAGTTTCAG--CCCGTCCAGTGCTTCCGAGAAATCGTGAGGAACT--T---T--GCTGCTTTGGTCGA-GGAATGGA--ATCAACTGCC-ACAAA-TCTTCTTCCGGAGACTTATCCGAAGCATGCAGAGACGTTGTCGCGCTGTTATTCAGGCACGTGGAGGTCA-TACC-ACATATTGACTTCATCAAA-TCATTGTTAAAACG-------ATTAATT-----GTGAATTTTCCGTCCTTT-NC-ATGGCTAATTTTCATTCTG-TTTTAGGGGGT-AATGTTACAAAGA-TGCCTTCTG-TATGTTAA--CGC-TTCA-AT-G-AA-TTTGGATA--AAAAACG--ATAAATATTG-TTTG--TGT-AATTGT-TGATTTTGAAGATAATA-TA-GT-TGT-GA-TGAAATATGTT
Reference ( family-62 ) : AAAAGTTAAGGATCA-TGA-TTTTCGAATAGTTAAAAAAA-A-T--TGGTAG-TATATTTT-TGGAAATAAA-TACATTGATACTTCCTTCAGTATGTTATTGATT-TGATTGTGTTTACCTGTTAAGATTGTGAAA--TGCGTGCTTAATTGAATGCTTGGG--TGAATTNGGACACAGGGTTCAAAAAACCAAAGTGTTTCAGGGATATTTTACGGGTAGTCAAGAAAATTTGTCATTTGAAGTTGTGTGGGACAT-TTTCGATATTTGTTGGTGACTTTGGAACATTTCAAGCCATGAGACGTCATTTAACGGGCGCGGAAGGGCAAGCTCAGGCCGTAGGTAATGGTCCAATCTGGTGTTGTTCAGAGAACTGTTGCCGCACACTTTGATGCGTCC--CAAAGTGTCATTTCTCGAATTATGGAATCGCTTCCATCAGACTGGTGTTGTTGCTGAGANACNACGTTCTNGTCGTCCGAGGTCGACTACCGCTCGTCAGGACCGTTACTTGGCCAATATGTCTAANCGTCAAAGGTTCCAGAGTGCTGTCAAGCTCAATAGAGACTTT-----GAAACAGCAACAGGGGTGCGCGTAACGGCACAAACTGTTCGTAACAGACTACAACGGTGCCAACATTAGAGCTTTCCGGCCAGCNGGTCCGCCCCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAGTAT-AACCGGAAAAA--GACTGAC-TTGCA---CGT-TATCGCA-GGCAAC-CTTAC-GGGCATCCGA-TACCGAGATGAGGTT--CTAGACCC-ATCG-T-CAGACCGTA-TGCC-GGTGCTAT--CGGCGATGACTTTATTTTGATGGATGATAATGCTCGTCCTCACAGGGCTAGA-GTTGTAACGG--AC-TATCTGGAAACTGAGACTATCGAGCGA-ATGGACTGGCCGAGCNTCTCTCCCGATCTTAA-C-C-GATAGAACATGCTTGGGACAAGCTACAGCAGGCAGTTTCAG--CCCGTCCAGTGCTTCCGAGAAATCGTGAGGAACT--T---T--GCTGCTTTGGTCGA-GGAATGGA--ATCAACTGCC-ACAAA-TCTTCTTCCGGAGACTTATCCGAAGCATGCAGAGACGTTGTCGCGCTGTTATTCAGGCACGTGGAGGTCA-TACC-ACATATTGACTTCATCAAA-TCATTGTTAAAACG-------ATTAATT-----GTGAATTTTCCGTCCTTT-NC-ATGGCTAATTTTCATTCTG-TTTTAGGGGGT-AATGTTACAAAGA-TGCCTTCTG-TATGTTAA--CGC-TTCA-AT-G-AA-TTTGGATA--AAAAACG--ATAAATATTG-TTTG--TGT-AATTGT-TGATTTTGAAGATAATA-TA-GT-TGT-GA-TGAAATATGTT
gi|1 : AAAAGTTAAGGATCA-TGA-TTTTCGAATAGTTAAAAAAA---T--TGGTAG-TA-ATTTT-TGGAAATAAA-TACATTGATACTTCCTTCAGTATGTTATTGATT--GATTGTGTTTACCTGT-AAGATTGTGAAA--TGCGTCCTTAATTGAATGCTTGGG--TGAATT-GGACACAGGGT-CAAAAA--CAAAGTGTTTCAGGG-TAT---ACGGGTAGTCAAAAAAAATTGTCATTTGAAGTTGTGTGGGACATGTTTCGATATTTGTTGGTGACTTTGGAACATTTCAAGCCATAGGACGTCATTTAACGGGCGTGGAAG--CAA-CTCAGGCCGTAGGTA-TGGTTCAATCTGGTGTTGTTCAGAGAACTGTTGCCGCAAACTTTAATGTGTCC--AAAAGTGTCATT-CTCGAATTA-GGAATCGCTTCTATCAGACTGGTGTTGTTGCTGAGATACCACGTTCTGGTCGTCCGAGGT-AACTACCGCTCGTCAGGACCGTTACTTGGCCAATATGTC-AAGCGTCAAAGGTTCCAGAGTGC-GTCA-GCTCAATAGAGACTTT-----GAAACAGCAACAGGG-TGCGCGTAACGGCACAAACTGTTCGTAACAGACTACAACGGTGCCAACATTAGAGCTTTCCGGCCAGCCGGTCCGCCCCA
gi|1 : CAGTAT-AAC-GGAA-----GACTGAC-TTGCA---CAT-T--CGCA-GGCAACTCTTAC-GGGCATCCGA-TACCGAGATGAGGTT--CTAGACCCCATCG-TTCAGACCGTA-TGCC-GGTGCTAT--CGGCGATGACTTTATTTTGATGGATGATAATGCTCGTCCTCACAGGGCTAGAAGTTG-AACGGGTACGTATCTGGAAAATG-GACTATCGAGCGAGATGGA-TGGCCGAGCTCTTCTCCCGATCTTAA-C-C-GATAGAACATGCTTGGGACA-----CAGCAGACAGTTTCAG--CCCGTCCAGT-CTTCCGAGAA-TCGTGAGGAACT--T---T--GCTGCTTTGGTCGA-GGAATGGA--ATCAACTGCCCACAAA-TCTTCTTCCGGAGACTTATCCGAAGCATGCAGAGACGTTGTCGCGCTGTTATTCAGGCAGGTGGAGGTCAATACC-ACATATTGACTTCATCAAAATCATTGTTAAA-CG-------AT-AATT-----GTGAATTT-CCGTCCTTT-AT-ATGGCTAATTTTCATTCTG-TTTTAGGGGGT-AATGTTAC-AAGA-TG-CTTCTGTTATGTTAA--CGCGTTGA-AT-G-AA-TTTGGATA--AAAAACG--ATAAATATTG-TTTG--TGT-AATTGT-TGA-TTTGAAGATAATA-TA-GT-TGT-GATTGAAATATGTTaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncagtataacggaagactgacttgcacattcgcaggcaactcttacgggcatccgataccgagatgaggttctagaccccatcgttcagaccgtatgccggtgctatcggcgatgactttattttgatggatgataatgctcgtcctcacagggctagaagttgaacgggtacgtatctggaaaatggactatcgagcgagatggatggccgagctcttctcccgatcttaaccgatagaacatgcttgggacacagcagacagtttcagcccgtccagtcttccgagaatcgtgaggaactttgctgctttggtcgaggaatggaatcaactgcccacaaatcttcttccggagacttatccgaagcatgcagagacgttgtcgcgctgttattcaggcaggtggaggtcaataccacatattgacttcatcaaaatcattgttaaacgataattgtgaatttccgtcctttatatggctaattttcattctgttttagggggtaatgttacaagatgcttctgttatgttaacgcgttgaatgaatttggataaaaaacgataaatattgtttgtgtaattgttgatttgaagataatatagttgtgattgaaatatgtt
gi|10 : aaaagttaaggatcatgattttcgaatagttaaaaaaattggtagtaatttttggaaataaatacattgatacttccttcagtatgttattgattgattgtgtttacctgtaagattgtgaaatgcgtccttaattgaatgcttgggtgaattggacacagggtcaaaaacaaagtgtttcagggtatacgggtagtcaaaaaaaattgtcatttgaagttgtgtgggacatgtttcgatatttgttggtgactttggaacatttcaagccataggacgtcatttaacgggcgtggaagcaactcaggccgtaggtatggttcaatctggtgttgttcagagaactgttgccgcaaactttaatgtgtccaaaagtgtcattctcgaattaggaatcgcttctatcagactggtgttgttgctgagataccacgttctggtcgtccgaggtaactaccgctcgtcaggaccgttacttggccaatatgtcaagcgtcaaaggttccagagtgcgtcagctcaatagagactttgaaacagcaacagggtgcgcgtaacggcacaaactgttcgtaacagactacaacggtgccaacattagagctttccggccagccggtccgccccaaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTTT-ACCATGGCTAATTTTCATTCTG-TTTTAGGGG-T-AATGTTACAAAGA-TGCCTTCTG-TATGTTAA--CGC-TTCA-AT-G-AA-TTTGGATA--AAA-ACG--ATAAATATTG-TTTG--TGT-AATTGT-CGATTTTGAAGATAATA-TA-GT-TGT-GA-TGAAATATGTT
gi|11 : tggacaaaaagttaaggatcatgatttaaaaataatttaaC-AAGGCTAATTTTCATTCTG-TTTTAGGGGGT-AATGTTACAAAGA-TGCCTTCTG-TATGTTAA--CGC-TTCA-AT-G-AA-TTTGGAT---AAAAACG--ATAAATATTG-TTTG--TGT-AATTGT-TGATTTTGTAGATAATA-TA-GT-TGT-AA-TGAAATATGTTgttatttgttataaattaaattatttgttaaatcatgatcttccttaactttttttgtccagt
gi|12 : acTGGCTAACTTACATTCTG-TTTTAGGGGGT-ATTGTTACAAAAA-TGAATTCTG-TATGTTAA--CGC-TTTA-AT-A-AA-TTTGGAT---AAAAACG--ATAAATATTG-TTTG--TGT-AATTGT-TGATTTTGAAGATAATA-CA-GT-TGT-GA-TGAAATATGTTgttatttgttatcaattaaattatttgtaaatcatgatccttaactttttttgtccagt
gi|13 : AAAATTTAAGGATCA-TGA-TTTTCGAATAGTTAAAAAAA-A-T--TGGTAG-TATATTTT-TGGAAATAAA-TACATTGATACTTCCTTCAGTATGTTATTGA-T-TGATTGTGTTTACCTG-TAAGATTGTGAAATGTGTGTGCTTAATTAAATGCTTGGG--TGAATTCGgttatttgttatagattaaattatttctaaatcatgatccttaacattttttgtccagta
gi|14 : actgggcaaTGTTAATACGC-TTCACAT-GCAA-TTTGGAC----AAAACGGCATAAAAATTGTTTTGGTTGTAAATTGTATGATTTTG-AGATATTAGTA-CTATGT-GA--GAAATGT
gi|14 : AAAAGTTACGGATCACTGACTTTTCAAATAATTAAtgtatttgtataataaattaattatttgaaaagtcagtgatccgtaactttttttgctccaggttt
gi|15 : tgttaatacgcttcacatgcaatttggacaaaacggcataaaaattgttttggttgtaaattgtatgattttgagatattagtactatgtgagaaatgttgtatttgtataataaa--CGT-TCCA-AT-G-AACTTTGGAAATTAAAAACG--ATAAATATTG-TT----AGT-AATTGT-TGA-TTTGA--GTAATA-TACGT-Ttttgctccaggttt
gi|16 : acCAGTATTAACCGGAAAAAAAGACTGACGTTGCATAACGTGTATCGCAAGGCAAC-CTTACGGGGTATCCGATTACC--GATTAGGTTCCCTAGACCCGATCG-T-CA-ACGATATTGC---GTGCTAT--CGcctaaaaacatcaatgatgaatgaaatatgttgttattttataattaaatcatttgtatcatgaatcgcttaacttttttgcacatcagt
gi|17 : tgtat-TGTTTTTGAAGATAACA-TA-GT-TGT-GG-TGAAATGTATT
gi|2 : GTAT-AACCGGAAA----GACTGAC-TTGCA---CGT-TATCGCA-TGCAAC-CTTAC-GGGCATCCAA-TACCGAG-TGAGGTT--CTAGACC--ATCG-T-CAGACCGTA-TGCCCGGTGCTATGGTGGCGATGACCTTATTTTGATGGATGATAATGCTCGTCCTCACAGGGCTAGA-GTTGTAACGG--AC-T-TCTGGAAACTGAGACTATCGAGCGA-ATGGACTGGCCGAGCCTCTCTCCCGATTTTAA-C-CCAATAGAACATGCTTGGGACAAGCTACAGCAGGACGTTTCAG--CCCGTCAAGTGCTTCCGAGAAATCGTGAGGAACT--T---TCTGCTGCTTTGGTCGA-GGAATG-A--ATCAACTGCC-A-AAA-TCTTTT--CGGAGACTTATCCGAAGCATGCAGAGACGTTGTCGCGCTGTTATTCAGGCACGT-GAGGTCA-TACCAAAATATTGACTTCATCAAA-TCATTGTTAAAACG-------ATTAATT-----GTGAATTTTCCGTCCTTTCCC-ATGACTAATTTTCATTCTGTTTTTAGGGGGTAAATGTTA-AAAGA-TGCCTTCTG-TATGTTAA--CGC-TTCA-AT-G-AA-TTTGGAT---AAAAACG--ATAAATATTG-TTTG--TGT-AATTGT-TGATTTTGAAGATAATA-TA-GT-TGT-GA-TGAAATATGTTgttatttgttatgaattaaattatttgtaaatcatgatccttaatatttttgtcaaatat
gi|20 : GAGTGCTGTCAAGCTCAATAGAGACTTTAATTTGAAACAGCAGCAAGGGTGCGCGTAACGGCACAAACTGTTCgttatttgttaaaattaaattatttgtagatcatgatccttaactttttgtccagta
gi|21 : ATTGTGAAA--TGCGTGTTTAATTGAATGCTTTGG--TGAAATCGGACACAGGG-TCAAAAA--CGAAGTGTTTC
gi|22 : AAA-A-T--TGGTAGGTATTTTTTTTGGAAATGAA-TACATTGATACTTCC
gi|23 : AAAAGTTAGGGATCA-TGA-TTTTCGAATAGTTAAAAAA
gi|25 : ggacaaaaAAAAGTTAAGGATCA-TGA-TTT
gi|27 : tA-TCTTCTGCCGGAGACTTATCCGAAGCATGTAtttgtccagtat
gi|3 : -TACCGAGATGAGTTT--CTAGACCC-CTTGGT-CAGACCGTA-TGCC-GGTGCTAT--CAGCGATGACTTTGTTTTGATGGAAGATAATGCTCGTCCTCACAGGGCTAGA-GTTGTAACGA--AC-TATCTGGAAACTGAGACTATCGAGCGA-ATGGACTGGCCGAGCATCTCTCCCGATCTTAA-CGC-GATATAACATGATTGGGACAAGCTATAGCAGGTAGTTTCAG--CCCCTCCAGTGCTTCCGAGAAATAGTGAGGAACTGTT---T--GCTGCTTTGGTCGA-GGAATGGA--ATCAACTGCC-ACAAA-TCTTCTTCTGGAGACTTATCCGAAGTATGCAGAGACGTTGTCGCGGTGTTATTTAGGCACGTGGAGGTCA-TACC-ACATATTGA-TTCATCAAA-TCATTGTTAAAACA-------ATTAATT-----GTAAATTTTCCGTCCTTTACC-ATGGATAATTTTTATTCTG-TTTTAGGGGGT-AACGTTACAAAGA-TGCCTTCTC-CATGTTAA--TGC-TTCA-AT-G-AA-TTTGGAT---AGAAACG--ATAAATATTG-TTTG--TGT-AATCGT-TGATTTGGAAGATAATA-TA-GT-TGT-GA-TGAAATATGTT
gi|4 : AAAAGTTAAAGGTCA-TGA-CTTTTGAATAGTTAAAACAATA-T--TGGTAG-TATATTTT-TGGAAATAAA-AACATTGATACTTCCTTCAGTATGTTATTGA-T-TGATTGTGTTTACCTG-TAAGATTGTGAAA--TGGGTgttatttgttataaattaaattatttgtaaatcatgatccttaacttcttttgtcaagt
gi|4 : actggacaatGTTACAGGG-TAT---ACGGGTAGTCAAGAAAATGTGTCATTTGAAGTCCTGTGGGACAT-TTTCGTTATTTGTTCGTGACTTTAGAACATTTCAAGCCATGAGACGTCATTTAACAGGCGTGGAAG--CA-GCTCAGGCCGTAGGTA-TGGTCCAATCTGGTATTGTTCAGAGAACAGTTGCTGCACACTTTGATGTGTCC--CAAAGTGCCATTTCTCGA-TTATGAAATCGCTTCCATCAGACTGGTGTTGTTGCTGAGAGACGATGTTCTCGTCATCCGAGGTCGACTACCGCTCGTCAGGACCGTTACTTGGCCAATATGTCTAATCGTCAAAGGTTCCAGAGTACTGCCAAGCTCAATAGATACTTT-----GAAACAACAACAGGGGTGCGCGTAACGGCAAAAACTGTTCGTAACAGACTAC-ACGGTGCCAACATTAGAGCTTTCCGGCCAG-AGGTCCGCCCCAtacagggtatacgggtagtcaagaaaatgtgtcatttgaagtcctgtgggacattttcgttatttgttcgtgactttagaacatttcaagccatgagacgtcatttaacaggcgtggaagcagctcaggccgtaggtatggtccaatctggtattgttcagagaacagttgctgcacactttgatgtgtcccaaagtgccatttctcgattatgaaatcgcttccatcagactggtgttgttgctgagagacgatgttctcgtcatccgaggtcgactaccgctcgtcaggaccgttacttggccaatatgtctaatcgtcaaaggttccagagtactgccaagctcaatagatactttgaaacaacaacaggggtgcgcgtaacggcaaaaactgttcgtaacagactacacggtgccaacattagagctttccggccagaggtccgcccca
gi|5 : actggacaataaaagttaaaggtcatgacttttgaatagttaaaacaatattggtagtatatttttggaaataaaaacattgatacttccttcagtatgttattgattgattgtgtttacctgtaagattgtgaaatggCGATCTTAATC-C-GATAGAACATGCTTGGAA-AAGCTACAGAAGGCAGTTACATATCCCGTCCAGTGCTTCCGAGAAATCGTGAGGAACT--TCTCT--GCTGCTTTGGTAGAAGGAATGGACAATCAACTGCCGACAAAATCTTCTTTCGGAGACTTATCCGAAGCATGCAGAGACGTTGTCGCGCTGTTATTCAGGCACGTG-AGAT-A-TACC-ACATATTGACTTCAT---------TGTTTAAACG-------ATTAATT-----GTGAATTTTCCGTCCTTA-CC-ATGGCTA-TTTTCATTCTG-TTTTAGGGGGT--ATGTTACAAAGATTGCCTTCTG-TATGTTAA--CGT-TTCA-ATAG-AA-TTT-GATA--AAAAACG--ATAAATATTG-TGTG--TGT-AATTGT-TGATTTTTAAGATAATA-TA-GT-TGTGGA-TGACATATGTT
gi|5 : AAAAGTTAAGGATCA-TGA-TTTgttatttgttataaataaaattgtttgttaaatcatgatccttaacttttttgtccagtata
gi|6 : cgatcttaatccgatagaacatgcttggaaaagctacagaaggcagttacatatcccgtccagtgcttccgagaaatcgtgaggaacttctctgctgctttggtagaaggaatggacaatcaactgccgacaaaatcttctttcggagacttatccgaagcatgcagagacgttgtcgcgctgttattcaggcacgtgagatataccacatattgacttcattgtttaaacgattaattgtgaattttccgtccttaccatggctattttcattctgttttagggggtatgttacaaagattgccttctgtatgttaacgtttcaatagaatttgataaaaaacgataaatattgtgtgtgtaattgttgatttttaagataatatagttgtggatgacatatgttgttatttgttataaataaaattgtttgttAAAAGTTAAGGATCA-TGA-TTT-CGAATAGTTAAAAAAA-A-TGTTGTTAG-TATATTTT-TG-AAATAAAATACAT-GATACTTCCTTCAGTATGT-ATTTTTTATGATTGTGTTTTCCTGTTAAGATTGTGAAA--TGCGTGCTTATTGGAATGCTTGGGGTTGAATTAGGACAAAGGGTTCAAAAAACCAAAGTGTTTCAGGGATATTTTACGGGTAGTCAAGAAAATTTGTCATTTGAAGTTATGTGGGACAT-TTTCTATATTTGTTGGTGATTTTGGAACATTTCAAGCCATGAGACGTCATTTAACG---GCGGAAGGGCAAGCTCCAGCCGTAGGTAATGGTCCAATCTGGTGTTGTTCAGAGAACT-------TATACATTGATACTTCCTTCAGTATGTTATTTTTttgtccagtata
gi|7 : atactggacaatAAAAGTTAAGGATCA-TGA-TTT-CGAATAGTTAAAAAAA-A-TGTTGTTAG-TATATTTT-TG-AAATAAAATACAT-GATACTTCCTTCAGTATGT-ATTTTTTATGATTGTGTTTTCCTGTTAAGATTGTGAAA--TGCGTGCTTATTGGAATGCTTGGGGTTGAATTAGGACAAAGGGTTCAAAAAACCAAAGTGTTTCAGGGATATTTTACGGGTAGTCAAGAAAATTTGTCATTTGAAGTTATGTGGGACAT-TTTCTATATTTGTTGGTGATTTTGGAACATTTCAAGCCATGAGACGTCATTTAACG---GCGGAAGGGCAAGCTCCAGCCGTAGGTAATGGTCCAATCTGGTGTTGTTCAGAGA
gi|8 : tggacaatAAAAGTTAAGGATCG-TGA-TTTTCGAATAGTTAAAAAAA-AAT--TGGTAG-TATATTTT-TGGAAATAAA-TACATTGATACTTCCTTCAGTATGTTATTGATT--GATTGTGTTTACCTGT-AAGATTGTGAAA--TGCGTGCTTAATTGAATGCTTGGG--TGAATTCGGACACAGGGT-CAAAAA--CAAAGTGTTTCAGGG-TAT---ACGGATAGTAAAGAAAATTTGTCATTTGAAGTTGTGTGGGACAT-TTTCGATATTTGTTGGTGACTTTGGAACATTTCAAGCCATGATACGTCATTTAACAGGTTTAGAA--GC-AGCTCAGGCCGTAGGTAG-GGTCCAATCTGGTGTTGTTCAGAGAACTG
gi|9 : aatggacaaaAA-T-ATTGCTAGAAGGCTTTGTTATTGATTCCCGCGTGAATTTTCCGTCCTTT-ACCATGGCTAATTTTCATTCTG-TTTTAGGGGGT-AATGTTACAAAGA-TGCCTTCTG-TATGTTAA--CGC-TTCA-AT-G-AA-TTTGGAT---AAAAACG--ATAAATATTG-TTTG--TGT-AATTGT-TGATTTTGAAGATAATA-TA-GT-TGT-GA-TGAAATATGTT
gi|9 : AAAAGTTAAGGATCA-TGA-TTTACAAATAATTTAAgttatttattataaattaaattatttgtaaatcatgatccttaactttttttgtccagta
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|18 ): AATTGTTGATTGAAAATGAATATGTTGTGAGAAAATGTTGTTTTTGTATAAATTAAATTATGTCAACCATGATCCCTTAACTATTTTCTGTCCAGTA
Unaligned ( gi|19 ): GAAATATGTTGTTATTTGTTATCAATTAAAGAAGAAGGTACACTTTGTAAATCATGATCCATTTTTTTTTTGTCCAG
Unaligned ( gi|24 ): ATTTGTAAATCATGATCCTAAACTTTTTTGTCCAGTA
Unaligned ( gi|26 ): TCATGATCCTTAACTTTTTGTCCAGTATATTAC
Alignments
lowQualScore : 111111 1 22 11 11 11 22 2 333 111 1 11 11 1 1 1 1 33333 1 11 1 2222 1 222 1 1 1 1 1 11 22 111 1 11 11 1 11 1 1 1 1 1 11 222222222 1 11 2 1 1 2222222 22222 1111 222
lowQualScore : 3 3 4 666666 5 5 4 1 5 7 7 00 44 77 88 6 11 55 0 111 1 8 333 5 11 0 44 2 3 1 0 88 7 5 5 1 1 1 5 5 1 7 7 33333 6 5 66 3 6 8888 3 333 3 7 3 3 3 0 2 3 33 22 111 2 0 22 33 3 7 88 3 7 7 3 6 1 0 0 0 2 3 0 33 2 3 777777777 0 2 33 0 2 8 5 55 2 0 0 2 2 888 0 6666666 0 00000 0 8888 5 5 5 5 55 4 4 4 4 4 555 55 4 55 4 3 3 3 3 4 4
lowQualScore : . . . ...... . . . . . . . .. .. .. .. . .. .. . ... . . ... . .. . .. . . . . .. . . . . . . . . . . . ..... . . .. . . .... . ... . . . . . . . . .. .. ... . . .. .. . . .. . . . . . . . . . . . . .. . . ......... . . .. . . . . .. . . . . . ... . ....... . ..... . .... . . . . .. . . . . . ... .. . .. . . . . . . .
lowQualScore : 6 6 8 111111 7 7 3 4 0 3 3 77 77 99 33 7 44 44 4 222 4 0 222 0 66 6 44 5 7 0 7 33 3 5 5 0 0 0 0 5 0 3 3 33333 7 5 00 3 7 3333 3 333 3 3 3 3 3 0 5 2 88 55 000 5 0 55 88 3 3 33 3 3 3 3 7 0 0 0 0 5 2 2 88 5 2 000000000 0 5 88 0 5 0 6 00 5 0 0 5 5 888 8 0000000 8 00000 8 0000 0 0 0 0 55 0 0 0 0 0 999 55 0 55 0 6 6 6 6 0 0
consensus : AAAAGTTAAGGATCA-TGA-TTTTCGAATAGTTAAAAAAA-A-T--TGGTAG-TATATTTT-TGGAAATAAA-TACATTGATACTTCCTTCAGTATGTTATTGATT-TGATTGTGTTTACCTGTTAAGATTGTGAAA--TGCGTGCTTAATTGAATGCTTGGG--TGAATTCGGACACAGGGTTCAAAAAACCAAAGTGTTTCAGGGATATTTTACGGGTAGTCAAGAAAATTTGTCATTTGAAGTTGTGTGGGACAT-TTTCGATATTTGTTGGTGACTTTGGAACATTTCAAGCCATGAGACGTCATTTAACGGGCGCGGAAGGGCAAGCTCAGGCCGTAGGTAATGGTCCAATCTGGTGTTGTTCAGAGAACTGTTGCCGCANACTTTGATGCGTCC--CAAAGTGTCATTTCTCGAATTATGGAATCGCTTCCATCAGACTGGTGTTGTTGCTGAGANACNACGTTCTNGTCGTCCGAGGTCGACTACCGCTCGTCAGGACCGTTACTTGGCCAATATGTCTAANCGTCAAAGGTTCCAGAGTGCTGTCAAGCTCAATAGAGACTTT-----GAAACAGCAACAGGGGTGCGCGTAACGGCACAAACTGTTCGTAACAGACTACAACGGTGCCAACATTAGAGCTTTCCGGCCAGCNGGTCCGCCCCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAGTAT-AACCGGAAA----GACTGAC-TTGCA---CGT-TATCGCA-GGCAAC-CTTAC-GGGCATCCGA-TACCGAGATGAGGTT--CTAGACCC-ATCG-T-CAGACCGTA-TGCC-GGTGCTAT--CGGCGATGACTTTATTTTGATGGATGATAATGCTCGTCCTCACAGGGCTAGA-GTTGTAACGG--AC-TATCTGGAAACTGAGACTATCGAGCGA-ATGGACTGGCCGAGCNTCTCTCCCGATCTTAA-C-C-GATAGAACATGCTTGGGACAAGCTACAGCAGGCAGTTTCAG--CCCGTCCAGTGCTTCCGAGAAATCGTGAGGAACT--T---T--GCTGCTTTGGTCGA-GGAATGGA--ATCAACTGCC-ACAAA-TCTTCTTCCGGAGACTTATCCGAAGCATGCAGAGACGTTGTCGCGCTGTTATTCAGGCACGTGGAGGTCA-TACC-ACATATTGACTTCATCAAA-TCATTGTTAAAACG-------ATTAATT-----GTGAATTTTCCGTCCTTT-NC-ATGGCTAATTTTCATTCTG-TTTTAGGGGGT-AATGTTACAAAGA-TGCCTTCTG-TATGTTAA--CGC-TTCA-AT-G-AA-TTTGGATA--AAAAACG--ATAAATATTG-TTTG--TGT-AATTGT-TGATTTTGAAGATAATA-TA-GT-TGT-GA-TGAAATATGTT
Reference ( family-62 ) : AAAAGTTAAGGATCA-TGA-TTTTCGAATAGTTAAAAAAA-A-T--TGGTAG-TATATTTT-TGGAAATAAA-TACATTGATACTTCCTTCAGTATGTTATTGATT-TGATTGTGTTTACCTGTTAAGATTGTGAAA--TGCGTGCTTAATTGAATGCTTGGG--TGAATTCGGACACAGGGTTCAAAAAACCAAAGTGTTTCAGGGATATTTTACGGGTAGTCAAGAAAATTTGTCATTTGAAGTTGTGTGGGACAT-TTTCGATATTTGTTGGTGACTTTGGAACATTTCAAGCCATGAGACGTCATTTAACGGGCGCGGAAGGGCAAGCTCAGGCCGTAGGTAATGGTCCAATCTGGTGTTGTTCAGAGAACTGTTGCCGCANACTTTGATGCGTCC--CAAAGTGTCATTTCTCGAATTATGGAATCGCTTCCATCAGACTGGTGTTGTTGCTGAGANACNACGTTCTNGTCGTCCGAGGTCGACTACCGCTCGTCAGGACCGTTACTTGGCCAATATGTCTAANCGTCAAAGGTTCCAGAGTGCTGTCAAGCTCAATAGAGACTTT-----GAAACAGCAACAGGGGTGCGCGTAACGGCACAAACTGTTCGTAACAGACTACAACGGTGCCAACATTAGAGCTTTCCGGCCAGCNGGTCCGCCCCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAGTAT-AACCGGAAA----GACTGAC-TTGCA---CGT-TATCGCA-GGCAAC-CTTAC-GGGCATCCGA-TACCGAGATGAGGTT--CTAGACCC-ATCG-T-CAGACCGTA-TGCC-GGTGCTAT--CGGCGATGACTTTATTTTGATGGATGATAATGCTCGTCCTCACAGGGCTAGA-GTTGTAACGG--AC-TATCTGGAAACTGAGACTATCGAGCGA-ATGGACTGGCCGAGCNTCTCTCCCGATCTTAA-C-C-GATAGAACATGCTTGGGACAAGCTACAGCAGGCAGTTTCAG--CCCGTCCAGTGCTTCCGAGAAATCGTGAGGAACT--T---T--GCTGCTTTGGTCGA-GGAATGGA--ATCAACTGCC-ACAAA-TCTTCTTCCGGAGACTTATCCGAAGCATGCAGAGACGTTGTCGCGCTGTTATTCAGGCACGTGGAGGTCA-TACC-ACATATTGACTTCATCAAA-TCATTGTTAAAACG-------ATTAATT-----GTGAATTTTCCGTCCTTT-NC-ATGGCTAATTTTCATTCTG-TTTTAGGGGGT-AATGTTACAAAGA-TGCCTTCTG-TATGTTAA--CGC-TTCA-AT-G-AA-TTTGGATA--AAAAACG--ATAAATATTG-TTTG--TGT-AATTGT-TGATTTTGAAGATAATA-TA-GT-TGT-GA-TGAAATATGTT
gi|1 : AAAAGTTAAGGATCA-TGA-TTTTCGAATAGTTAAAAAAA---T--TGGTAG-TA-ATTTT-TGGAAATAAA-TACATTGATACTTCCTTCAGTATGTTATTGATT--GATTGTGTTTACCTGT-AAGATTGTGAAA--TGCGTCCTTAATTGAATGCTTGGG--TGAATT-GGACACAGGGT-CAAAAA--CAAAGTGTTTCAGGG-TAT---ACGGGTAGTCAAAAAAAATTGTCATTTGAAGTTGTGTGGGACATGTTTCGATATTTGTTGGTGACTTTGGAACATTTCAAGCCATAGGACGTCATTTAACGGGCGTGGAAG--CAA-CTCAGGCCGTAGGTA-TGGTTCAATCTGGTGTTGTTCAGAGAACTGTTGCCGCAAACTTTAATGTGTCC--AAAAGTGTCATT-CTCGAATTA-GGAATCGCTTCTATCAGACTGGTGTTGTTGCTGAGATACCACGTTCTGGTCGTCCGAGGT-AACTACCGCTCGTCAGGACCGTTACTTGGCCAATATGTC-AAGCGTCAAAGGTTCCAGAGTGC-GTCA-GCTCAATAGAGACTTT-----GAAACAGCAACAGGG-TGCGCGTAACGGCACAAACTGTTCGTAACAGACTACAACGGTGCCAACATTAGAGCTTTCCGGCCAGCCGGTCCGCCCCA
gi|1 : CAGTAT-AAC--GGAA----GACTGAC-TTGCA---CAT-T--CGCA-GGCAACTCTTAC-GGGCATCCGA-TACCGAGATGAGGTT--CTAGACCCCATCG-TTCAGACCGTA-TGCC-GGTGCTAT--CGGCGATGACTTTATTTTGATGGATGATAATGCTCGTCCTCACAGGGCTAGAAGTTG-AACGGGTACGTATCTGGAAAATG-GACTATCGAGCGAGATGGA-TGGCCGAGCTCTTCTCCCGATCTTAA-C-C-GATAGAACATGCTTGGGACA-----CAGCAGACAGTTTCAG--CCCGTCCAGT-CTTCCGAGAA-TCGTGAGGAACT--T---T--GCTGCTTTGGTCGA-GGAATGGA--ATCAACTGCCCACAAA-TCTTCTTCCGGAGACTTATCCGAAGCATGCAGAGACGTTGTCGCGCTGTTATTCAGGCAGGTGGAGGTCAATACC-ACATATTGACTTCATCAAAATCATTGTTAAA-CG-------AT-AATT-----GTGAATTT-CCGTCCTTT-AT-ATGGCTAATTTTCATTCTG-TTTTAGGGGGT-AATGTTAC-AAGA-TG-CTTCTGTTATGTTAA--CGCGTTGA-AT-G-AA-TTTGGATA--AAAAACG--ATAAATATTG-TTTG--TGT-AATTGT-TGA-TTTGAAGATAATA-TA-GT-TGT-GATTGAAATATGTTaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncagtataacggaagactgacttgcacattcgcaggcaactcttacgggcatccgataccgagatgaggttctagaccccatcgttcagaccgtatgccggtgctatcggcgatgactttattttgatggatgataatgctcgtcctcacagggctagaagttgaacgggtacgtatctggaaaatggactatcgagcgagatggatggccgagctcttctcccgatcttaaccgatagaacatgcttgggacacagcagacagtttcagcccgtccagtcttccgagaatcgtgaggaactttgctgctttggtcgaggaatggaatcaactgcccacaaatcttcttccggagacttatccgaagcatgcagagacgttgtcgcgctgttattcaggcaggtggaggtcaataccacatattgacttcatcaaaatcattgttaaacgataattgtgaatttccgtcctttatatggctaattttcattctgttttagggggtaatgttacaagatgcttctgttatgttaacgcgttgaatgaatttggataaaaaacgataaatattgtttgtgtaattgttgatttgaagataatatagttgtgattgaaatatgtt
gi|10 : aaaagttaaggatcatgattttcgaatagttaaaaaaattggtagtaatttttggaaataaatacattgatacttccttcagtatgttattgattgattgtgtttacctgtaagattgtgaaatgcgtccttaattgaatgcttgggtgaattggacacagggtcaaaaacaaagtgtttcagggtatacgggtagtcaaaaaaaattgtcatttgaagttgtgtgggacatgtttcgatatttgttggtgactttggaacatttcaagccataggacgtcatttaacgggcgtggaagcaactcaggccgtaggtatggttcaatctggtgttgttcagagaactgttgccgcaaactttaatgtgtccaaaagtgtcattctcgaattaggaatcgcttctatcagactggtgttgttgctgagataccacgttctggtcgtccgaggtaactaccgctcgtcaggaccgttacttggccaatatgtcaagcgtcaaaggttccagagtgcgtcagctcaatagagactttgaaacagcaacagggtgcgcgtaacggcacaaactgttcgtaacagactacaacggtgccaacattagagctttccggccagccggtccgccccaaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTTT-ACCATGGCTAATTTTCATTCTG-TTTTAGGGG-T-AATGTTACAAAGA-TGCCTTCTG-TATGTTAA--CGC-TTCA-AT-G-AA-TTTGGATA--AAA-ACG--ATAAATATTG-TTTG--TGT-AATTGT-CGATTTTGAAGATAATA-TA-GT-TGT-GA-TGAAATATGTT
gi|11 : tggacaaaaagttaaggatcatgatttaaaaataatttaaC-AAGGCTAATTTTCATTCTG-TTTTAGGGGGT-AATGTTACAAAGA-TGCCTTCTG-TATGTTAA--CGC-TTCA-AT-G-AA-TTTGGAT---AAAAACG--ATAAATATTG-TTTG--TGT-AATTGT-TGATTTTGTAGATAATA-TA-GT-TGT-AA-TGAAATATGTTgttatttgttataaattaaattatttgttaaatcatgatcttccttaactttttttgtccagt
gi|12 : acTGGCTAACTTACATTCTG-TTTTAGGGGGT-ATTGTTACAAAAA-TGAATTCTG-TATGTTAA--CGC-TTTA-AT-A-AA-TTTGGAT---AAAAACG--ATAAATATTG-TTTG--TGT-AATTGT-TGATTTTGAAGATAATA-CA-GT-TGT-GA-TGAAATATGTTgttatttgttatcaattaaattatttgtaaatcatgatccttaactttttttgtccagt
gi|13 : AAAATTTAAGGATCA-TGA-TTTTCGAATAGTTAAAAAAA-A-T--TGGTAG-TATATTTT-TGGAAATAAA-TACATTGATACTTCCTTCAGTATGTTATTGA-T-TGATTGTGTTTACCTG-TAAGATTGTGAAATGTGTGTGCTTAATTAAATGCTTGGG--TGAATTCGgttatttgttatagattaaattatttctaaatcatgatccttaacattttttgtccagta
gi|14 : actgggcaaTGTTAATACGC-TTCACAT-GCAA-TTTGGAC----AAAACGGCATAAAAATTGTTTTGGTTGTAAATTGTATGATTTTG-AGATATTAGTA-CTATGT-GA--GAAATGT
gi|14 : AAAAGTTACGGATCACTGACTTTTCAAATAATTAAtgtatttgtataataaattaattatttgaaaagtcagtgatccgtaactttttttgctccaggttt
gi|15 : tgttaatacgcttcacatgcaatttggacaaaacggcataaaaattgttttggttgtaaattgtatgattttgagatattagtactatgtgagaaatgttgtatttgtataataaa--CGT-TCCA-AT-G-AACTTTGGAAATTAAAAACG--ATAAATATTG-TT----AGT-AATTGT-TGA-TTTGA--GTAATA-TACGT-Ttttgctccaggttt
gi|16 : acCAGTATTAACCGGAAAAAAAGACTGACGTTGCATAACGTGTATCGCAAGGCAAC-CTTACGGGGTATCCGATTACC--GATTAGGTTCCCTAGACCCGATCG-T-CA-ACGATATTGC---GTGCTAT--CGcctaaaaacatcaatgatgaatgaaatatgttgttattttataattaaatcatttgtatcatgaatcgcttaacttttttgcacatcagt
gi|17 : tgtat-TGTTTTTGAAGATAACA-TA-GT-TGT-GG-TGAAATGTATT
gi|2 : GTAT-AACCGGAAA----GACTGAC-TTGCA---CGT-TATCGCA-TGCAAC-CTTAC-GGGCATCCAA-TACCGAG-TGAGGTT--CTAGACC--ATCG-T-CAGACCGTA-TGCCCGGTGCTATGGTGGCGATGACCTTATTTTGATGGATGATAATGCTCGTCCTCACAGGGCTAGA-GTTGTAACGG--AC-T-TCTGGAAACTGAGACTATCGAGCGA-ATGGACTGGCCGAGCCTCTCTCCCGATTTTAA-C-CCAATAGAACATGCTTGGGACAAGCTACAGCAGGACGTTTCAG--CCCGTCAAGTGCTTCCGAGAAATCGTGAGGAACT--T---TCTGCTGCTTTGGTCGA-GGAATG-A--ATCAACTGCC-A-AAA-TCTTTT--CGGAGACTTATCCGAAGCATGCAGAGACGTTGTCGCGCTGTTATTCAGGCACGT-GAGGTCA-TACCAAAATATTGACTTCATCAAA-TCATTGTTAAAACG-------ATTAATT-----GTGAATTTTCCGTCCTTTCCC-ATGACTAATTTTCATTCTGTTTTTAGGGGGTAAATGTTA-AAAGA-TGCCTTCTG-TATGTTAA--CGC-TTCA-AT-G-AA-TTTGGAT---AAAAACG--ATAAATATTG-TTTG--TGT-AATTGT-TGATTTTGAAGATAATA-TA-GT-TGT-GA-TGAAATATGTTgttatttgttatgaattaaattatttgtaaatcatgatccttaatatttttgtcaaatat
gi|20 : GAGTGCTGTCAAGCTCAATAGAGACTTTAATTTGAAACAGCAGCAAGGGTGCGCGTAACGGCACAAACTGTTCgttatttgttaaaattaaattatttgtagatcatgatccttaactttttgtccagta
gi|21 : ATTGTGAAA--TGCGTGTTTAATTGAATGCTTTGG--TGAAATCGGACACAGGG-TCAAAAA--CGAAGTGTTTC
gi|22 : AAA-A-T--TGGTAGGTATTTTTTTTGGAAATGAA-TACATTGATACTTCC
gi|23 : AAAAGTTAGGGATCA-TGA-TTTTCGAATAGTTAAAAAA
gi|25 : ggacaaaaAAAAGTTAAGGATCA-TGA-TTT
gi|27 : tA-TCTTCTGCCGGAGACTTATCCGAAGCATGTAtttgtccagtat
gi|3 : -TACCGAGATGAGTTT--CTAGACCC-CTTGGT-CAGACCGTA-TGCC-GGTGCTAT--CAGCGATGACTTTGTTTTGATGGAAGATAATGCTCGTCCTCACAGGGCTAGA-GTTGTAACGA--AC-TATCTGGAAACTGAGACTATCGAGCGA-ATGGACTGGCCGAGCATCTCTCCCGATCTTAA-CGC-GATATAACATGATTGGGACAAGCTATAGCAGGTAGTTTCAG--CCCCTCCAGTGCTTCCGAGAAATAGTGAGGAACTGTT---T--GCTGCTTTGGTCGA-GGAATGGA--ATCAACTGCC-ACAAA-TCTTCTTCTGGAGACTTATCCGAAGTATGCAGAGACGTTGTCGCGGTGTTATTTAGGCACGTGGAGGTCA-TACC-ACATATTGA-TTCATCAAA-TCATTGTTAAAACA-------ATTAATT-----GTAAATTTTCCGTCCTTTACC-ATGGATAATTTTTATTCTG-TTTTAGGGGGT-AACGTTACAAAGA-TGCCTTCTC-CATGTTAA--TGC-TTCA-AT-G-AA-TTTGGAT---AGAAACG--ATAAATATTG-TTTG--TGT-AATCGT-TGATTTGGAAGATAATA-TA-GT-TGT-GA-TGAAATATGTT
gi|4 : AAAAGTTAAAGGTCA-TGA-CTTTTGAATAGTTAAAACAATA-T--TGGTAG-TATATTTT-TGGAAATAAA-AACATTGATACTTCCTTCAGTATGTTATTGA-T-TGATTGTGTTTACCTG-TAAGATTGTGAAA--TGGGTgttatttgttataaattaaattatttgtaaatcatgatccttaacttcttttgtcaagt
gi|4 : actggacaatGTTACAGGG-TAT---ACGGGTAGTCAAGAAAATGTGTCATTTGAAGTCCTGTGGGACAT-TTTCGTTATTTGTTCGTGACTTTAGAACATTTCAAGCCATGAGACGTCATTTAACAGGCGTGGAAG--CA-GCTCAGGCCGTAGGTA-TGGTCCAATCTGGTATTGTTCAGAGAACAGTTGCTGCACACTTTGATGTGTCC--CAAAGTGCCATTTCTCGA-TTATGAAATCGCTTCCATCAGACTGGTGTTGTTGCTGAGAGACGATGTTCTCGTCATCCGAGGTCGACTACCGCTCGTCAGGACCGTTACTTGGCCAATATGTCTAATCGTCAAAGGTTCCAGAGTACTGCCAAGCTCAATAGATACTTT-----GAAACAACAACAGGGGTGCGCGTAACGGCAAAAACTGTTCGTAACAGACTAC-ACGGTGCCAACATTAGAGCTTTCCGGCCAG-AGGTCCGCCCCAtacagggtatacgggtagtcaagaaaatgtgtcatttgaagtcctgtgggacattttcgttatttgttcgtgactttagaacatttcaagccatgagacgtcatttaacaggcgtggaagcagctcaggccgtaggtatggtccaatctggtattgttcagagaacagttgctgcacactttgatgtgtcccaaagtgccatttctcgattatgaaatcgcttccatcagactggtgttgttgctgagagacgatgttctcgtcatccgaggtcgactaccgctcgtcaggaccgttacttggccaatatgtctaatcgtcaaaggttccagagtactgccaagctcaatagatactttgaaacaacaacaggggtgcgcgtaacggcaaaaactgttcgtaacagactacacggtgccaacattagagctttccggccagaggtccgcccca
gi|5 : actggacaataaaagttaaaggtcatgacttttgaatagttaaaacaatattggtagtatatttttggaaataaaaacattgatacttccttcagtatgttattgattgattgtgtttacctgtaagattgtgaaatggCGATCTTAATC-C-GATAGAACATGCTTGGAA-AAGCTACAGAAGGCAGTTACATATCCCGTCCAGTGCTTCCGAGAAATCGTGAGGAACT--TCTCT--GCTGCTTTGGTAGAAGGAATGGACAATCAACTGCCGACAAAATCTTCTTTCGGAGACTTATCCGAAGCATGCAGAGACGTTGTCGCGCTGTTATTCAGGCACGTG-AGAT-A-TACC-ACATATTGACTTCAT---------TGTTTAAACG-------ATTAATT-----GTGAATTTTCCGTCCTTA-CC-ATGGCTA-TTTTCATTCTG-TTTTAGGGGGT--ATGTTACAAAGATTGCCTTCTG-TATGTTAA--CGT-TTCA-ATAG-AA-TTT-GATA--AAAAACG--ATAAATATTG-TGTG--TGT-AATTGT-TGATTTTTAAGATAATA-TA-GT-TGTGGA-TGACATATGTT
gi|5 : AAAAGTTAAGGATCA-TGA-TTTgttatttgttataaataaaattgtttgttaaatcatgatccttaacttttttgtccagtata
gi|6 : cgatcttaatccgatagaacatgcttggaaaagctacagaaggcagttacatatcccgtccagtgcttccgagaaatcgtgaggaacttctctgctgctttggtagaaggaatggacaatcaactgccgacaaaatcttctttcggagacttatccgaagcatgcagagacgttgtcgcgctgttattcaggcacgtgagatataccacatattgacttcattgtttaaacgattaattgtgaattttccgtccttaccatggctattttcattctgttttagggggtatgttacaaagattgccttctgtatgttaacgtttcaatagaatttgataaaaaacgataaatattgtgtgtgtaattgttgatttttaagataatatagttgtggatgacatatgttgttatttgttataaataaaattgtttgttAAAAGTTAAGGATCA-TGA-TTT-CGAATAGTTAAAAAAA-A-TGTTGTTAG-TATATTTT-TG-AAATAAAATACAT-GATACTTCCTTCAGTATGT-ATTTTTTATGATTGTGTTTTCCTGTTAAGATTGTGAAA--TGCGTGCTTATTGGAATGCTTGGGGTTGAATTAGGACAAAGGGTTCAAAAAACCAAAGTGTTTCAGGGATATTTTACGGGTAGTCAAGAAAATTTGTCATTTGAAGTTATGTGGGACAT-TTTCTATATTTGTTGGTGATTTTGGAACATTTCAAGCCATGAGACGTCATTTAACG---GCGGAAGGGCAAGCTCCAGCCGTAGGTAATGGTCCAATCTGGTGTTGTTCAGAGAACT-------TATACATTGATACTTCCTTCAGTATGTTATTTTTttgtccagtata
gi|7 : atactggacaatAAAAGTTAAGGATCA-TGA-TTT-CGAATAGTTAAAAAAA-A-TGTTGTTAG-TATATTTT-TG-AAATAAAATACAT-GATACTTCCTTCAGTATGT-ATTTTTTATGATTGTGTTTTCCTGTTAAGATTGTGAAA--TGCGTGCTTATTGGAATGCTTGGGGTTGAATTAGGACAAAGGGTTCAAAAAACCAAAGTGTTTCAGGGATATTTTACGGGTAGTCAAGAAAATTTGTCATTTGAAGTTATGTGGGACAT-TTTCTATATTTGTTGGTGATTTTGGAACATTTCAAGCCATGAGACGTCATTTAACG---GCGGAAGGGCAAGCTCCAGCCGTAGGTAATGGTCCAATCTGGTGTTGTTCAGAGA
gi|8 : tggacaatAAAAGTTAAGGATCG-TGA-TTTTCGAATAGTTAAAAAAA-AAT--TGGTAG-TATATTTT-TGGAAATAAA-TACATTGATACTTCCTTCAGTATGTTATTGATT--GATTGTGTTTACCTGT-AAGATTGTGAAA--TGCGTGCTTAATTGAATGCTTGGG--TGAATTCGGACACAGGGT-CAAAAA--CAAAGTGTTTCAGGG-TAT---ACGGATAGTAAAGAAAATTTGTCATTTGAAGTTGTGTGGGACAT-TTTCGATATTTGTTGGTGACTTTGGAACATTTCAAGCCATGATACGTCATTTAACAGGTTTAGAA--GC-AGCTCAGGCCGTAGGTAG-GGTCCAATCTGGTGTTGTTCAGAGAACTG
gi|9 : aatggacaaaAA-T-ATTGCTAGAAGGCTTTGTTATTGATTCCCGCGTGAATTTTCCGTCCTTT-ACCATGGCTAATTTTCATTCTG-TTTTAGGGGGT-AATGTTACAAAGA-TGCCTTCTG-TATGTTAA--CGC-TTCA-AT-G-AA-TTTGGAT---AAAAACG--ATAAATATTG-TTTG--TGT-AATTGT-TGATTTTGAAGATAATA-TA-GT-TGT-GA-TGAAATATGTT
gi|9 : AAAAGTTAAGGATCA-TGA-TTTACAAATAATTTAAgttatttattataaattaaattatttgtaaatcatgatccttaactttttttgtccagta
blockSeqs : C C T ATGT G T G A T T T AT TT TG GT C TT AC A TTT C . GGC G AA AT G T C TT T . T G G C C T T T A AATTT G . A T C AAAA G TAA G A A . G T G A CC CG GT G T CC GG . T . . A A . C C T G C C A AT G A TCTCT A G CA G C A G GG C . A C C TC CTTTGTT CCCGC ACC T A T . TA . C A C C ATT GC T GT A A G C A G .
blockSeqs : . . T ATGT . . G A T T T AT TT . GT C TT AC A TTT A . GGT G AA AT G . T . T T A . G . C . . . . A . . . . G A . C T G . C . . T . . . A . C A . . . C A . G A TTCT . G . . C . T G C . . C C TC . . CCC . . . . . . . . . . A . . . . . . . . . .
blockSeqs : . . T TAT . . G . T T T T T . . A T . . . A . . . A T . . . . . . T . . . . . . . . A . G A GTTT . . . . . . T G . . . . . T . . ACC . . . . . . . . . . A . . . . . . . . . .
blockSeqs : . . T AAT . . G . T . . T T . . A T . . . G . . . A G . . . . . ACC . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . T AT . . . . . . . . T . . C CC . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . A AT . . . . . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . .
blockSeqCons : ATAT** T* T* *** A* T** ACC* ***
originalCons : AAAAGTTAAGGATCA-TGA-TTTTCGAATAGTTAAAAAAA-A-T--TGGTAG-TATATTTT-TGGAAATAAA-TACATTGATACTTCCTTCAGTATGTTATTGATT-TGATTGTGTTTACCTGTTAAGATTGTGAAA--TGCGTGCTTAATTGAATGCTTGGG--TGAATTCGGACACAGGGTTCAAAAAACCAAAGTGTTTCAGGGATATTTTACGGGTAGTCAAGAAAATTTGTCATTTGAAGTTGTGTGGGACAT-TTTCGATATTTGTTGGTGACTTTGGAACATTTCAAGCCATGAGACGTCATTTAACGGGCGCGGAAGGGCAAGCTCAGGCCGTAGGTAATGGTCCAATCTGGTGTTGTTCAGAGAACTGTTGCCGCANACTTTGATGCGTCC--CAAAGTGTCATTTCTCGAATTATGGAATCGCTTCCATCAGACTGGTGTTGTTGCTGAGANACNACGTTCTNGTCGTCCGAGGTCGACTACCGCTCGTCAGGACCGTTACTTGGCCAATATGTCTAANCGTCAAAGGTTCCAGAGTGCTGTCAAGCTCAATAGAGACTTT-----GAAACAGCAACAGGGGTGCGCGTAACGGCACAAACTGTTCGTAACAGACTACAACGGTGCCAACATTAGAGCTTTCCGGCCAGCNGGTCCGCCCCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAGTAT-AACCGGAAA----GACTGAC-TTGCA---CGT-TATCGCA-GGCAAC-CTTAC-GGGCATCCGA-TACCGAGATGAGGTT--CTAGACCC-ATCG-T-CAGACCGTA-TGCC-GGTGCTAT--CGGCGATGACTTTATTTTGATGGATGATAATGCTCGTCCTCACAGGGCTAGA-GTTGTAACGG--AC-TATCTGGAAACTGAGACTATCGAGCGA-ATGGACTGGCCGAGCNTCTCTCCCGATCTTAA-C-C-GATAGAACATGCTTGGGACAAGCTACAGCAGGCAGTTTCAG--CCCGTCCAGTGCTTCCGAGAAATCGTGAGGAACT--T---T--GCTGCTTTGGTCGA-GGAATGGA--ATCAACTGCC-ACAAA-TCTTCTTCCGGAGACTTATCCGAAGCATGCAGAGACGTTGTCGCGCTGTTATTCAGGCACGTGGAGGTCA-TACC-ACATATTGACTTCATCAAA-TCATTGTTAAAACG-------ATTAATT-----GTGAATTTTCCGTCCTTT-NC-ATGGCTAATTTTCATTCTG-TTTTAGGGGGT-AATGTTACAAAGA-TGCCTTCTG-TATGTTAA--CGC-TTCA-AT-G-AA-TTTGGATA--AAAAACG--ATAAATATTG-TTTG--TGT-AATTGT-TGATTTTGAAGATAATA-TA-GT-TGT-GA-TGAAATATGTT
finalCons : AAAAGTTAAGGATCA-TGA-TTTTCGAATAGTTAAAAAAAATAT--TGGTAG-TATATTTT-TGGAAATAAA-TACATTGATACTTCCTTCAGTATGTTATTGATTT-GATTGTGTTTACCTGTTAAGATTGTGAAA--TGCGTGCTTAATTGAATGCTTGGG--TGAATTCGGACACAGGGT-CAAAAAACCAAAGTGTTTCAGGGATATTTTACGGGTAGTCAAGAAAATTTGTCATTTGAAGTTGTGTGGGACAT-TTTCGATATTTGTTGGTGACTTTGGAACATTTCAAGCCATGAGACGTCATTTAACG---GCGGAAGGGCA-GCTCAGGCCGTAGGTAATGGTCCAATCTGGTGTTGTTCAGAGAACTGTTGCCGCANACTTTGATGCGTCC--CAAAGTGTCATTTCTCGAATTATGGAATCGCTTCCATCAGACTGGTGTTGTTGCTGAGANACNACGTTCTNGTCGTCCGAGGTCGACTACCGCTCGTCAGGACCGTTACTTGGCCAATATGTCTAANCGTCAAAGGTTCCAGAGTGCTGTCAAGCTCAATAGAGACTTT-----GAAACAGCAACAGGGGTGCGCGTAACGGCACAAACTGTTCGTAACAGACTACAACGGTGCCAACATTAGAGCTTTCCGGCCAGCNGGTCCGCCCCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAGTAT-AACCGGAAA----GACTGAC-TTGCA---CGT-TATCGCA-GGCAAC-CTTAC-GGGCATCCGA-TACCGAGATGAGGTT--CTAGACCC-ATCG-T-CAGACCGTA-TGCC-GGTGCTAT--CGGCGATGACTTTATTTTGATGGATGATAATGCTCGTCCTCACAGGGCTAGA-GTTGTAACGG--AC-TATCTGGAAACTGAGACTATCGAGCGA-ATGGACTGGCCGAGCNTCTCTCCCGATCTTAA-C-C-GATAGAACATGCTTGGGACAAGCTACAGCAGGCAGTTTCAG--CCCGTCCAGTGCTTCCGAGAAATCGTGAGGAACT--T---T--GCTGCTTTGGTCGA-GGAATGGA--ATCAACTGCC-ACAAA-TCTTCTTCCGGAGACTTATCCGAAGCATGCAGAGACGTTGTCGCGCTGTTATTCAGGCACGTGGAGGTCA-TACC-ACATATTGACTTCATCAAAT--ATTGTTAAAACG-------ATTAATT-----GTGAATTTTCCGTCCTTTACC-ATGGCTAATTTTCATTCTG-TTTTAGGGGGT-AATGTTACAAAGA-TGCCTTCTG-TATGTTAA--CGC-TTCA-AT-G-AA-TTTGGAT---AAAAACG--ATAAATATTG-TTTG--TGT-AATTGT-TGATTTTGAAGATAATA-TA-GT-TGT-GA-TGAAATATGTT
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|18 ): AATTGTTGATTGAAAATGAATATGTTGTGAGAAAATGTTGTTTTTGTATAAATTAAATTATGTCAACCATGATCCCTTAACTATTTTCTGTCCAGTA
Unaligned ( gi|19 ): GAAATATGTTGTTATTTGTTATCAATTAAAGAAGAAGGTACACTTTGTAAATCATGATCCATTTTTTTTTTGTCCAG
Unaligned ( gi|24 ): ATTTGTAAATCATGATCCTAAACTTTTTTGTCCAGTA
Unaligned ( gi|26 ): TCATGATCCTTAACTTTTTGTCCAGTATATTAC
Alignments
lowQualScore : 111 1 22 11 11 1 22 2 333 1111111111111 22222 11 1 1 1 1 33333 1 1 11 1 2222 1 222 1 1 1 1 1 11 22 111 1 11 11 1 11 1 1 1 1 1 11 222222222 1 11 1 1 11 1 2222 2222222 22222
lowQualScore : 3 3 7 999 5 5 4 1 5 7 7 00 44 77 88 6 6 55 0 111 1 8 9999999999999 11111 0 555 2 3 1 0 88 7 5 5 1 1 1 5 5 1 7 7 33333 2 5 66 3 6 8888 3 333 3 7 3 3 3 0 2 3 33 22 111 2 0 22 33 3 7 88 3 7 7 3 6 1 0 0 0 55 0 33 2 3 777777777 0 2 33 0 0 2 8 5 55 22 0 2 3 5555 6 6666666 0 00000 0 5 5 5 5 55 4 4 4 4 4 777 8 55 4 55 4 3 3 3 3 4 4
lowQualScore : . . . ... . . . . . . . .. .. .. .. . . .. . ... . . ............. ..... . ... . . . . .. . . . . . . . . . . . ..... . . .. . . .... . ... . . . . . . . . .. .. ... . . .. .. . . .. . . . . . . . . . .. . .. . . ......... . . .. . . . . . .. .. . . . .... . ....... . ..... . . . . . .. . . . . . ... . .. . .. . . . . . . .
lowQualScore : 1 1 0 111 7 7 3 4 0 3 3 77 77 99 33 7 0 44 4 222 4 0 8888888888888 00000 6 444 5 7 0 7 33 3 5 5 0 0 0 0 5 0 3 3 33333 0 5 00 3 7 3333 3 333 3 3 3 3 3 0 5 2 88 55 000 5 0 55 88 3 3 33 3 3 3 3 7 0 0 0 0 88 2 88 5 2 000000000 0 5 88 0 0 5 0 6 00 55 0 5 2 8888 0 0000000 8 00000 8 0 0 0 0 55 0 0 0 0 0 000 0 55 0 55 0 6 6 6 6 0 0
consensus : AAAAGTTAAGGATCA-TGA-TTTTCGAATAGTTAAAAAAAATATTGGTAG-TATATTTT-TGGAAATAAA-TACATTGATACTTCCTTCAGTATGTTATTGATT-TGATTGTGTTTACCTGTTAAGATTGTGAAA--TGCGTGCTTAATTGAATGCTTGGG--TGAATTCGGACACAGGGTTCAAAAAACCAAAGTGTTTCAGGGATATTTTACGGGTAGTCAAGAAAATTTGTCATTTGAAGTTGTGTGGGACAT-TTTCGATATTTGTTGGTGACTTTGGAACATTTCAAGCCATGAGACGTCATTTAAC-G---G---CG--GAAGGGCAAGCTCAGGCCGTAGGTAATGGTCCAATCTGGTGTTGTTCAGAGAACTGTTGCCGCANACTTTGATGCGTCC--CAAAGTGTCATTTCTCGAATTATGGAATCGCTTCCATCAGACTGGTGTTGTTGCTGAGANACNACGTTCTNGTCGTCCGAGGTCGACTACCGCTCGTCAGGACCGTTACTTGGCCAATATGTCTAANCGTCAAAGGTTCCAGAGTGCTGTCAAGCTCAATAGAGACTTT-----GAAACAGCAACAGGGGTGCGCGTAACGGCACAAACTGTTCGTAACAGACTACAACGGTGCCAACATTAGAGCTTTCCGGCCAGCNGGTCCGCCCCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAGTAT-AACCGGAAA----GACTGAC-TTGCA---CGT-TATCGCA-GGCAAC-CTTAC-GGGCATCCGA-TACCGAGATGAGGTT--CTAGACCC-ATCG-T-CAGACCGTA-TGCC-GGTGCTAT--CGGCGATGACTTTATTTTGATGGATGATAATGCTCGTCCTCACAGGGCTAG-AGTTGTAACGG--AC-TATCTGGAAACTGAGACTATCGAGCGA-ATGGACTGGCCGAGCNTCTCTCCCGATCTTAA-C-C-GATAGAACATGCTTGGGACAAGCTACAGCAGGCAGTTTCAG--CCCGTCCAGTGCTTCCGAGAAATCGTGAGGAACT--T---T--GCTGCTTTGGTCGA-GGAATGGA--ATCAACTG-CC-ACAAA-TCTTCTTCCGGAGACTTATCCGAAGCATGCAGAGACGTTGTCGCGCTGTTATTCAGGCACGTGGAGGTC-ATACCACA-TATTGACTTCATCAAA--TCATTGTTAAAACG-------ATTAATT-----GTGAATTTTCCGTCCTTTACCATGGCTAATTTTCATTCTGTTTT-AGGGGGT-AATGTTACAAAGA-TGCCTTCTG-TATGTTAA--CGC-TTCA-AT-G-AA-TTTGGA---T-AAAAACG--ATAAATATTG-TTTG--TGT-AATTGT-TGATTTTGAAGATAATA-TA-GT-TGT-GA-TGAAATATGTT
Reference ( family-62 ) : AAAAGTTAAGGATCA-TGA-TTTTCGAATAGTTAAAAAAAATATTGGTAG-TATATTTT-TGGAAATAAA-TACATTGATACTTCCTTCAGTATGTTATTGATT-TGATTGTGTTTACCTGTTAAGATTGTGAAA--TGCGTGCTTAATTGAATGCTTGGG--TGAATTCGGACACAGGGT-CAAAAAACCAAAGTGTTTCAGGGATATTTTACGGGTAGTCAAGAAAATTTGTCATTTGAAGTTGTGTGGGACAT-TTTCGATATTTGTTGGTGACTTTGGAACATTTCAAGCCATGAGACGTCATTTAAC-G---G---CG--GAAGGGC-AGCTCAGGCCGTAGGTAATGGTCCAATCTGGTGTTGTTCAGAGAACTGTTGCCGCANACTTTGATGCGTCC--CAAAGTGTCATTTCTCGAATTATGGAATCGCTTCCATCAGACTGGTGTTGTTGCTGAGANACNACGTTCTNGTCGTCCGAGGTCGACTACCGCTCGTCAGGACCGTTACTTGGCCAATATGTCTAANCGTCAAAGGTTCCAGAGTGCTGTCAAGCTCAATAGAGACTTT-----GAAACAGCAACAGGGGTGCGCGTAACGGCACAAACTGTTCGTAACAGACTACAACGGTGCCAACATTAGAGCTTTCCGGCCAGCNGGTCCGCCCCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAGTAT-AACCGGAAA----GACTGAC-TTGCA---CGT-TATCGCA-GGCAAC-CTTAC-GGGCATCCGA-TACCGAGATGAGGTT--CTAGACCC-ATCG-T-CAGACCGTA-TGCC-GGTGCTAT--CGGCGATGACTTTATTTTGATGGATGATAATGCTCGTCCTCACAGGGCTAG-AGTTGTAACGG--AC-TATCTGGAAACTGAGACTATCGAGCGA-ATGGACTGGCCGAGCNTCTCTCCCGATCTTAA-C-C-GATAGAACATGCTTGGGACAAGCTACAGCAGGCAGTTTCAG--CCCGTCCAGTGCTTCCGAGAAATCGTGAGGAACT--T---T--GCTGCTTTGGTCGA-GGAATGGA--ATCAACTG-CC-ACAAA-TCTTCTTCCGGAGACTTATCCGAAGCATGCAGAGACGTTGTCGCGCTGTTATTCAGGCACGTGGAGGTC-ATACCACA-TATTGACTTCATCAAA--T-ATTGTTAAAACG-------ATTAATT-----GTGAATTTTCCGTCCTTTACCATGGCTAATTTTCATTCTGTTTT-AGGGGGT-AATGTTACAAAGA-TGCCTTCTG-TATGTTAA--CGC-TTCA-AT-G-AA-TTTGGA---T-AAAAACG--ATAAATATTG-TTTG--TGT-AATTGT-TGATTTTGAAGATAATA-TA-GT-TGT-GA-TGAAATATGTT
gi|1 : AAAAGTTAAGGATCA-TGA-TTTTCGAATAGTTAAAAAAA---TTGGTAG-TA-ATTTT-TGGAAATAAA-TACATTGATACTTCCTTCAGTATGTTATTGATT--GATTGTGTTTACCTGT-AAGATTGTGAAA--TGCGTCCTTAATTGAATGCTTGGG--TGAATT-GGACACAGGGT-CAAAAA--CAAAGTGTTTCAGGG-TAT---ACGGGTAGTCAAAAAAAATTGTCATTTGAAGTTGTGTGGGACATGTTTCGATATTTGTTGGTGACTTTGGAACATTTCAAGCCATAGGACGTCATTTAAC-GGGCG---TG--GAA--GC-AACTCAGGCCGTAGGT-ATGGTTCAATCTGGTGTTGTTCAGAGAACTGTTGCCGCAAACTTTAATGTGTCC--AAAAGTGTCA-TTCTCGAATTA-GGAATCGCTTCTATCAGACTGGTGTTGTTGCTGAGATACCACGTTCTGGTCGTCCGAGGT-AACTACCGCTCGTCAGGACCGTTACTTGGCCAATATGTC-AAGCGTCAAAGGTTCCAGAGTGC-GTC-AGCTCAATAGAGACTTT-----GAAACAGCAACA-GGGTGCGCGTAACGGCACAAACTGTTCGTAACAGACTACAACGGTGCCAACATTAGAGCTTTCCGGCCAGCCGGTCCGCCCCA
gi|1 : CAGTAT-AAC--GGAA----GACTGAC-TTGCA---CAT-T--CGCA-GGCAACTCTTAC-GGGCATCCGA-TACCGAGATGAGGTT--CTAGACCCCATCG-TTCAGACCGTA-TGCC-GGTGCTAT--CGGCGATGACTTTATTTTGATGGATGATAATGCTCGTCCTCACAGGGCTAGAAGTTG-AACGGGTACGTATCTGGAAAATG-GACTATCGAGCGAGATGGA-TGGCCGAGCTCTTCTCCCGATCTTAA-C-C-GATAGAACATGCTTGGGAC-----ACAGCAGACAGTTTCAG--CCCGTCCAGT-CTTCCGAG-AATCGTGAGGAACT--T---T--GCTGCTTTGGTCGA-GGAATGGA--ATCAACTGCCC-ACAAA-TCTTCTTCCGGAGACTTATCCGAAGCATGCAGAGACGTTGTCGCGCTGTTATTCAGGCAGGTGGAGGTCAATACCACA-TATTGACTTCATCAAAATC-ATTGTT-AAACG-------A-TAATT-----GTGAA-TTTCCGTCCTTTA-TATGGCTAATTTTCATTCTGTTTT-AGGGGGT-AATGTTAC-AAGA-TG-CTTCTGTTATGTTAA--CGCGTTGA-AT-G-AA-TTTGGA---TAAAAAACG--ATAAATATTG-TTTG--TGT-AATTGT-TGA-TTTGAAGATAATA-TA-GT-TGT-GATTGAAATATGTTaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncagtataacggaagactgacttgcacattcgcaggcaactcttacgggcatccgataccgagatgaggttctagaccccatcgttcagaccgtatgccggtgctatcggcgatgactttattttgatggatgataatgctcgtcctcacagggctagaagttgaacgggtacgtatctggaaaatggactatcgagcgagatggatggccgagctcttctcccgatcttaaccgatagaacatgcttgggacacagcagacagtttcagcccgtccagtcttccgagaatcgtgaggaactttgctgctttggtcgaggaatggaatcaactgcccacaaatcttcttccggagacttatccgaagcatgcagagacgttgtcgcgctgttattcaggcaggtggaggtcaataccacatattgacttcatcaaaatcattgttaaacgataattgtgaatttccgtcctttatatggctaattttcattctgttttagggggtaatgttacaagatgcttctgttatgttaacgcgttgaatgaatttggataaaaaacgataaatattgtttgtgtaattgttgatttgaagataatatagttgtgattgaaatatgtt
gi|10 : aaaagttaaggatcatgattttcgaatagttaaaaaaattggtagtaatttttggaaataaatacattgatacttccttcagtatgttattgattgattgtgtttacctgtaagattgtgaaatgcgtccttaattgaatgcttgggtgaattggacacagggtcaaaaacaaagtgtttcagggtatacgggtagtcaaaaaaaattgtcatttgaagttgtgtgggacatgtttcgatatttgttggtgactttggaacatttcaagccataggacgtcatttaacgggcgtggaagcaactcaggccgtaggtatggttcaatctggtgttgttcagagaactgttgccgcaaactttaatgtgtccaaaagtgtcattctcgaattaggaatcgcttctatcagactggtgttgttgctgagataccacgttctggtcgtccgaggtaactaccgctcgtcaggaccgttacttggccaatatgtcaagcgtcaaaggttccagagtgcgtcagctcaatagagactttgaaacagcaacagggtgcgcgtaacggcacaaactgttcgtaacagactacaacggtgccaacattagagctttccggccagccggtccgccccaaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTTTACCATGGCTAATTTTCATTCTGTTTT-AGGGG-T-AATGTTACAAAGA-TGCCTTCTG-TATGTTAA--CGC-TTCA-AT-G-AA-TTTGGA---T-AAAAACG--ATAAATATTG-TTTG--TGT-AATTGT-CGATTTTGAAGATAATA-TA-GT-TGT-GA-TGAAATATGTT
gi|11 : tggacaaaaagttaaggatcatgatttaaaaataatttaaACCAAGGCTAATTTTCATTCTGTTTT-AGGGGGT-AATGTTACAAAGA-TGCCTTCTG-TATGTTAA--CGC-TTCA-AT-G-AA-TTTGGA---T-AAAAACG--ATAAATATTG-TTTG--TGT-AATTGT-TGATTTTGTAGATAATA-TA-GT-TGT-AA-TGAAATATGTTgttatttgttataaattaaattatttgttaaatcatgatcttccttaactttttttgtccagt
gi|11 : AAAAGTTAAGGATCA-TGA-TTTACAAATAATTTAAgttatttgttatcaattaaattatttgtaaatcatgatccttaactttttttgtccagt
gi|12 : accaaggctaattttcattctgttttagggggtaatgttacaaagatgccttctgtatgttaacgcttcaatgaatttggataaaaacgataaatattgtttgtgtaattgttgattttgtagataatatagttgtaatgaaatatgttgttatttgttatcaaTGGCTAACTTACATTCTGTTTT-AGGGGGT-ATTGTTACAAAAA-TGAATTCTG-TATGTTAA--CGC-TTTA-AT-A-AA-TTTGGA---T-AAAAACG--ATAAATATTG-TTTG--TGT-AATTGT-TGATTTTGAAGATAATA-CA-GT-TGT-GA-TGAAATATGTTtttgtccagt
gi|13 : AAAATTTAAGGATCA-TGA-TTTTCGAATAGTTAAAAAAAAT--TGGTAG-TATATTTT-TGGAAATAAA-TACATTGATACTTCCTTCAGTATGTTATTGA-T-TGATTGTGTTTACCTG-TAAGATTGTGAAATGTGTGTGCTTAATTAAATGCTTGGG--TGAATTCGgttatttgttatagattaaattatttctaaatcatgatccttaacattttttgtccagta
gi|14 : actgggcaaTGTTAATACGC-TTCACAT-GCAA-TTTGGA---C--AAAACGGCATAAAAATTGTTTTGGTTGTAAATTGTATGATTTTG-AGATATTAGTA-CTATGT-GA--GAAATGT
gi|14 : AAAAGTTACGGATCACTGACTTTTCAAATAATTAAtgtatttgtataataaattaattatttgaaaagtcagtgatccgtaactttttttgctccaggttt
gi|15 : tgttaatacgcttcacatgcaatttggacaaaacggcataaaaattgttttggttgtaaattgtatgattttgagatattagtactatgtgagaaatgttgtatttgtataataaa--CGT-TCCA-AT-G-AACTTTGGAAATT-AAAAACG--ATAAATATTG-TT----AGT-AATTGT-TGA-TTTGA--GTAATA-TACGT-Ttttgctccaggttt
gi|16 : acCAGTATTAACCGGAAAAAAAGACTGACGTTGCATAACGTGTATCGCAAGGCAAC-CTTACGGGGTATCCGATTACC--GATTAGGTTCCCTAGACCCGATCG-T-CA-ACGATATTGC---GTGCTAT--CGcctaaaaacatcaatgatgaatgaaatatgttgttattttataattaaatcatttgtatcatgaatcgcttaacttttttgcacatcagt
gi|17 : tgtat-TGTTTTTGAAGATAACA-TA-GT-TGT-GG-TGAAATGTATT
gi|2 : GTAT-AACCGGAAA----GACTGAC-TTGCA---CGT-TATCGCA-TGCAAC-CTTAC-GGGCATCCAA-TACCGAG-TGAGGTT--CTAGACC--ATCG-T-CAGACCGTA-TGCCCGGTGCTATGGTGGCGATGACCTTATTTTGATGGATGATAATGCTCGTCCTCACAGGGCTAG-AGTTGTAACGG--AC-T-TCTGGAAACTGAGACTATCGAGCGA-ATGGACTGGCCGAGCCTCTCTCCCGATTTTAA-C-CCAATAGAACATGCTTGGGACAAGCTACAGCAGGACGTTTCAG--CCCGTCAAGTGCTTCCGAGAAATCGTGAGGAACT--T---TCTGCTGCTTTGGTCGA-GGAATG-A--ATCAACTG-CC-A-AAA-TCTTTT--CGGAGACTTATCCGAAGCATGCAGAGACGTTGTCGCGCTGTTATTCAGGCACGTG-AGGTC-ATACCAAAATATTGACTTCATCAAA--TCATTGTTAAAACG-------ATTAATT-----GTGAATTTTCCGTCCTTTCCCATGACTAATTTTCATTCTGTTTTTAGGGGGTAAATGTTA-AAAGA-TGCCTTCTG-TATGTTAA--CGC-TTCA-AT-G-AA-TTTGGA---T-AAAAACG--ATAAATATTG-TTTG--TGT-AATTGT-TGATTTTGAAGATAATA-TA-GT-TGT-GA-TGAAATATGTTgttatttgttatgaattaaattatttgtaaatcatgatccttaatatttttgtcaaatat
gi|20 : GAGTGCTGTCAAGCTCAATAGAGACTTTAATTTGAAACAGCAGCAAGGGTGCGCGTAACGGCACAAACTGTTCgttatttgttaaaattaaattatttgtagatcatgatccttaactttttgtccagta
gi|21 : ATTGTGAAA--TGCGTGTTTAATTGAATGCTTTGG--TGAAATCGGACACAGGGT-CAAAAA--CGAAGTGTTTC
gi|22 : AAA-ATTGGTAGGTATTTTTTTTGGAAATGAA-TACATTGATACTTCC
gi|23 : AAAAGTTAGGGATCA-TGA-TTTTCGAATAGTTAAAAAA
gi|25 : ggacaaaaAAAAGTTAAGGATCA-TGA-TTT
gi|27 : tA-TCTTCTGCCGGAGACTTATCCGAAGCATGTAtttgtccagtat
gi|3 : -TACCGAGATGAGTTT--CTAGACCC-CTTGGT-CAGACCGTA-TGCC-GGTGCTAT--CAGCGATGACTTTGTTTTGATGGAAGATAATGCTCGTCCTCACAGGGCTAG-AGTTGTAACGA--AC-TATCTGGAAACTGAGACTATCGAGCGA-ATGGACTGGCCGAGCATCTCTCCCGATCTTAA-CGC-GATATAACATGATTGGGACAAGCTATAGCAGGTAGTTTCAG--CCCCTCCAGTGCTTCCGAGAAATAGTGAGGAACTGTT---T--GCTGCTTTGGTCGA-GGAATGGA--ATCAACTG-CC-ACAAA-TCTTCTTCTGGAGACTTATCCGAAGTATGCAGAGACGTTGTCGCGGTGTTATTTAGGCACGTGGAGGTC-ATACCACA-TATTGA-TTCATCAAA--TCATTGTTAAAACA-------ATTAATT-----GTAAATTTTCCGTCCTTTACCATGGATAATTTTTATTCTGTTTT-AGGGGGT-AACGTTACAAAGA-TGCCTTCTC-CATGTTAA--TGC-TTCA-AT-G-AA-TTTGGA---T-AGAAACG--ATAAATATTG-TTTG--TGT-AATCGT-TGATTTGGAAGATAATA-TA-GT-TGT-GA-TGAAATATGTT
gi|3 : AGAAGTTAAGGATCA-TGA-TTTACAAATAATTTAAgttatttgttataaattaaattatttgtaaatcatgatccttaacttcttttgtcaagt
gi|4 : taccgagatgagtttctagaccccttggtcagaccgtatgccggtgctatcagcgatgactttgttttgatggaagataatgctcgtcctcacagggctagagttgtaacgaactatctggaaactgagactatcgagcgaatggactggccgagcatctctcccgatcttaacgcgatataacatgattgggacaagctatagcaggtagtttcagcccctccagtgcttccgagaaatagtgaggaactgtttgctgctttggtcgaggaatggaatcaactgccacaaatcttcttctggagacttatccgaagtatgcagagacgttgtcgcggtgttatttaggcacgtggaggtcataccacatattgattcatcaaatcattgttaaaacaattaattgtaaattttccgtcctttaccatggataatttttattctgttttagggggtaacgttacaaagatgccttctccatgttaatgcttcaatgaatttggatagaaacgataaatattgtttgtgtaatcgttgatttggaagataatatagttgtgatgaaatatgttgttatttgttataaaAAAAGTTAAAGGTCA-TGA-CTTTTGAATAGTTAAAACAA-TATTGGTAG-TATATTTT-TGGAAATAAA-AACATTGATACTTCCTTCAGTATGTTATTGA-T-TGATTGTGTTTACCTG-TAAGATTGTGAAA--TGGGTtttgtcaagt
gi|4 : actggacaatGTTACAGGG-TAT---ACGGGTAGTCAAGAAAATGTGTCATTTGAAGTCCTGTGGGACAT-TTTCGTTATTTGTTCGTGACTTTAGAACATTTCAAGCCATGAGACGTCATTTAACAG---G---CGTGGAAG--C-AGCTCAGGCCGTAGGTA-TGGTCCAATCTGGTATTGTTCAGAGAACAGTTGCTGCACACTTTGATGTGTCC--CAAAGTGCCATTTCTCGA-TTATGAAATCGCTTCCATCAGACTGGTGTTGTTGCTGAGAGACGATGTTCTCGTCATCCGAGGTCGACTACCGCTCGTCAGGACCGTTACTTGGCCAATATGTCTAATCGTCAAAGGTTCCAGAGTACTGCCAAGCTCAATAGATACTTT-----GAAACAACAACAGGGGTGCGCGTAACGGCAAAAACTGTTCGTAACAGACTAC-ACGGTGCCAACATTAGAGCTTTCCGGCCAG-AGGTCCGCCCCAtacagggtatacgggtagtcaagaaaatgtgtcatttgaagtcctgtgggacattttcgttatttgttcgtgactttagaacatttcaagccatgagacgtcatttaacaggcgtggaagcagctcaggccgtaggtatggtccaatctggtattgttcagagaacagttgctgcacactttgatgtgtcccaaagtgccatttctcgattatgaaatcgcttccatcagactggtgttgttgctgagagacgatgttctcgtcatccgaggtcgactaccgctcgtcaggaccgttacttggccaatatgtctaatcgtcaaaggttccagagtactgccaagctcaatagatactttgaaacaacaacaggggtgcgcgtaacggcaaaaactgttcgtaacagactacacggtgccaacattagagctttccggccagaggtccgcccca
gi|5 : actggacaataaaagttaaaggtcatgacttttgaatagttaaaacaatattggtagtatatttttggaaataaaaacattgatacttccttcagtatgttattgattgattgtgtttacctgtaagattgtgaaatggCGATCTTAATC-C-GATAGAACATGCTTGGAA-AAGCTACAGAAGGCAGTTACATATCCCGTCCAGTGCTTCCGAGAAATCGTGAGGAACT--TCTCT--GCTGCTTTGGTAGAAGGAATGGACAATCAACTG-CCGACAAAATCTTCTTTCGGAGACTTATCCGAAGCATGCAGAGACGTTGTCGCGCTGTTATTCAGGCACGT-GAGAT--ATACCACA-TATTGACTTC----------ATTGTTTAAACG-------ATTAATT-----GTGAATTTTCCGTCC-TTACCATGGCT-ATTTTCATTCTGTTTT-AGGGGGT--ATGTTACAAAGATTGCCTTCTG-TATGTTAA--CGT-TTCA-ATAG-AA-TTT-GA---TAAAAAACG--ATAAATATTG-TGTG--TGT-AATTGT-TGATTTTTAAGATAATA-TA-GT-TGTGGA-TGACATATGTT
gi|5 : AAAAGTTAAGGATCA-TGA-TTTgttatttgttataaataaaattgtttgttaaatcatgatccttaacttttttgtccagtata
gi|6 : cgatcttaatccgatagaacatgcttggaaaagctacagaaggcagttacatatcccgtccagtgcttccgagaaatcgtgaggaacttctctgctgctttggtagaaggaatggacaatcaactgccgacaaaatcttctttcggagacttatccgaagcatgcagagacgttgtcgcgctgttattcaggcacgtgagatataccacatattgacttcattgtttaaacgattaattgtgaattttccgtccttaccatggctattttcattctgttttagggggtatgttacaaagattgccttctgtatgttaacgtttcaatagaatttgataaaaaacgataaatattgtgtgtgtaattgttgatttttaagataatatagttgtggatgacatatgttgttatttgttataaataaaattgtttgttAAAAGTTAAGGATCA-TGA-TTT-CGAATAGTTAAAAAAAATGTTGTTAG-TATATTTT-TG-AAATAAAATACAT-GATACTTCCTTCAGTATGT-ATTTTTTATGATTGTGTTTTCCTGTTAAGATTGTGAAA--TGCGTGCTTATTGGAATGCTTGGGGTTGAATTAGGACAAAGGGTTCAAAAAACCAAAGTGTTTCAGGGATATTTTACGGGTAGTCAAGAAAATTTGTCATTTGAAGTTATGTGGGACAT-TTTCTATATTTGTTGGTGATTTTGGAACATTTCAAGCCATGAGACGTCATTTAAC-G---G---CG--GAAGGGCAAGCTCCAGCCGTAGGTAATGGTCCAATCTGGTGTTGTTCAGAGAACT-------TATACATTGATACTTCCTTCAGTATGTTATTTTTttgtccagtata
gi|7 : atactggacaatAAAAGTTAAGGATCA-TGA-TTT-CGAATAGTTAAAAAAAATGTTGTTAG-TATATTTT-TG-AAATAAAATACAT-GATACTTCCTTCAGTATGT-ATTTTTTATGATTGTGTTTTCCTGTTAAGATTGTGAAA--TGCGTGCTTATTGGAATGCTTGGGGTTGAATTAGGACAAAGGGTTCAAAAAACCAAAGTGTTTCAGGGATATTTTACGGGTAGTCAAGAAAATTTGTCATTTGAAGTTATGTGGGACAT-TTTCTATATTTGTTGGTGATTTTGGAACATTTCAAGCCATGAGACGTCATTTAAC-G---G---CG--GAAGGGCAAGCTCCAGCCGTAGGTAATGGTCCAATCTGGTGTTGTTCAGAGA
gi|8 : tggacaatAAAAGTTAAGGATCG-TGA-TTTTCGAATAGTTAAAAAAAA-ATTGGTAG-TATATTTT-TGGAAATAAA-TACATTGATACTTCCTTCAGTATGTTATTGATT--GATTGTGTTTACCTGT-AAGATTGTGAAA--TGCGTGCTTAATTGAATGCTTGGG--TGAATTCGGACACAGGGT-CAAAAA--CAAAGTGTTTCAGGG-TAT---ACGGATAGTAAAGAAAATTTGTCATTTGAAGTTGTGTGGGACAT-TTTCGATATTTGTTGGTGACTTTGGAACATTTCAAGCCATGATACGTCATTTAAC-A---GGTTTA--GAA--GC-AGCTCAGGCCGTAGGTAG-GGTCCAATCTGGTGTTGTTCAGAGAACTG
gi|9 : aatggacaaaAA--T-ATTGCTAGAAGGCTTTGTTATTGATTCCCGCGTGAATTTTCCGTCCTTTACCATGGCTAATTTTCATTCTGTTTT-AGGGGGT-AATGTTACAAAGA-TGCCTTCTG-TATGTTAA--CGC-TTCA-AT-G-AA-TTTGGA---T-AAAAACG--ATAAATATTG-TTTG--TGT-AATTGT-TGATTTTGAAGATAATA-TA-GT-TGT-GA-TGAAATATGTT
gi|9 : AAAAGTTAAGGATCA-TGA-TTTACAAATAATTTAAgttatttattataaattaaattatttgtaaatcatgatccttaactttttttgtccagta
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|18 ): AATTGTTGATTGAAAATGAATATGTTGTGAGAAAATGTTGTTTTTGTATAAATTAAATTATGTCAACCATGATCCCTTAACTATTTTCTGTCCAGTA
Unaligned ( gi|19 ): GAAATATGTTGTTATTTGTTATCAATTAAAGAAGAAGGTACACTTTGTAAATCATGATCCATTTTTTTTTTGTCCAG
Unaligned ( gi|24 ): ATTTGTAAATCATGATCCTAAACTTTTTTGTCCAGTA
Unaligned ( gi|26 ): TCATGATCCTTAACTTTTTGTCCAGTATATTAC