lowQualScore : 1111111111111111111 444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 111111111111111111111111111111111111111111111111111 1111111111111111111111111111111 333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 111111111111111111 2222222222222222222222222222222222222222222222222222222222222222222222222 11111111111111111111111111111111111111111111111111111111111111 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 8888 4444444444444444444 22 2 2 11 22 222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 1 222222 1 6666666666666666 1 1 33333 4444444444444 000000000000000000000000000000000000000000000000000 1 11 888888888 1 1 1 1 1 1 0000000000000000000000000000000 2222222222 11 22 11 333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 11 33 1 1 1 111 444444 222 222 33 11 000000000000000000 33333 11 1 1 2 6666666 4444444 6666666 333 444444 2 2222222222222222222222222222222222222222222222222222222222222222222222222 1 2 1 1 1 66666666 22 44444444 1 1 44444444444444444444444444444444444444444444444444444444444444 2222 33333333 2222 22 1 11 55 4 1 2222 1 33 4 11 2222 222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 11 1111 1 222 111 22 1 111 666666666666666666666666666666666666 1
lowQualScore : 5555 0000000000000000000 2 3 77 4 0 0 77 44 3 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 7 3 222222 6 7 6 6 4444444444444444 2 7 7 55555 6666666666666 111111111111111111111111111111111111111111111111111 3 7 6 6 44 000000000 0 0 0 0 0 0 1111111111111111111111111111111 0 2222222222 33 3 55 6 33 000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 44 33 5 3 3 555 000000 333 666 7 0 11 22 444444444444444444 33333 88 6 3 11 6 5 7 3333333 4 3 1111111 7777777 555 999999 6 0 6666666666666666666666666666666666666666666666666666666666666666666666666 5 0 3 1 5 5 44444444 00 44444444 3 3 55555555555555555555555555555555555555555555555555555555555555 7777 88888888 4444 77 5 22 55 0 5 5555 6 5 888 6 66 0 77 88 8888 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 7 33 4444 0 8 88 0 333 777 0 11 55 5 555 555555555555555555555555555555555555 0 6 5 0 0
lowQualScore : .... ................... . . .. . . . .. .. . .................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... . . ...... . . . . ................ . . . ..... ............. ................................................... . . . . .. ......... . . . . . . ............................... . .......... .. . .. . .. ................................................................................................................................................................................................................................................................................................ .. .. . . . ... ...... ... ... . . .. .. .................. ..... .. . . .. . . . ....... . . ....... ....... ... ...... . . ......................................................................... . . . . . . ........ .. ........ . . .............................................................. .... ........ .... .. . .. .. . . .... . . ... . .. . .. .. .... ...................................................................................................... . .. .... . . .. . ... ... . .. .. . ... .................................... . . . . .
lowQualScore : 0000 0000000000000000000 5 0 55 0 0 0 55 00 0 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 3 3 000000 0 0 7 7 7777777777777777 0 3 3 00000 5555555555555 555555555555555555555555555555555555555555555555555 3 3 0 7 33 000000000 0 0 0 0 0 0 8888888888888888888888888888888 2 0000000000 88 2 00 5 88 888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 77 55 0 3 3 000 777777 333 777 3 7 77 00 000000000000000000 33333 00 7 3 77 0 0 5 0000000 0 0 0000000 5555555 000 000000 0 0 5555555555555555555555555555555555555555555555555555555555555555555555555 0 0 0 5 5 5 77777777 77 33333333 3 3 55555555555555555555555555555555555555555555555555555555555555 0000 55555555 5555 55 0 00 00 0 0 0000 0 5 000 0 77 0 77 00 3333 333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 3 88 8888 8 0 88 0 000 555 8 55 88 5 555 555555555555555555555555555555555555 8 7 3 7 6
consensus : AGAAAGGG----GGGGGGGGGTCGGGACNC------CAANCNTNTCGCCNTAATGGGCCTCCGGATGTGAATNAGAAGATACATNAAATTAAATTGATATATAGTTCA--AAACTA--TTTTATTTGCGTAAATACGTATA-TTA--ATT-TGCATATACGTCTATATTANAGGAATTGTCATGTAAGAAATANTCATTATCTTTTCTTTNAGAAAAA-AATAA-T-GGGTGT-----AATATATACACAGNCTGTTTATGTTACGACATCGGAAAATACAACCCTGTATAGATTTTTTGCCGTCGNCGATATAATACGACATNNGTNAAAATA-ANGCTCTATAA-GACTTATCACA--TTTCAAATCTTATCACTTCTTAT------TAT-----AAGTTTCA-TTCTCAATCCT-ATTGTCATA-A--CCTTTTCAAG-ATC--G--TTTTTTTGGTT---GTTTT--TTTGTTTTTN--AC-AT--TA-ATCCG-A---ATGAAA-TC------TT-CA-TGATCTTTT-CT--ACTTT----ATCCAAACGTAGCAT-TACTTANTA---GTATGTGTG-CT-TT-GCTG-AACACGCC--------------A---AC-GCA--------C-TTTNAAAG-----AAAAAATGAAGAAAAGT-GTAT--ATA-TACACATAAACCCAGTGGCGTG-CTGGG-CT---AAA-AAGTGAGGGGGCACA-AG--CTATCA-TAAATTNTTNGGTTAAAAGGGGGGGNG--CAGCAAANTTTAAAAACAAAATTGGCAAAGCAATAAT--AAAGATTCAGAAAATAGGA-GATGGGCATAGACCTAACACAG-CGATTCCTT--A--TGTAT-CA-AATAC-GG-TGAC-CA-TCC----TA-TAT----TT-CAAA-GATC----CGCCGAT---ANTC-CAGANACTCTTTAG-TTCAAAGGTCCG--ATAGTTCGA-AT---AG-CGCCATTGA------AGAACAAGCTGTAAAAAAATAAAAAAAATCCTTAAAACTTTATTTGGACATTTCACGTCATTGGAGTGACTTGAGGCGTGACGTTAGATAAT-AATTGAA-TTC-T-TCAAATGAAATATGATTATCAAAA-----TCGTT-AC-TTGTC-GA-TG-CGTGGATCAGGCGAG-A----TA-AC--------GATG-CGTC---ATCA-AAAT-G--C-TAA---TAACTCG--GT----ACAA--AAATA-T-ATA-T-GGATTCGGAGAAATATGTTATGGTACATGCAA-GAAAT-AATGTCTTTGAG-CA-GCTGA---GAA-C-TGCATATTAAAATTG--GTATTTTTTT------NAC------TC-CTCAT-----CTGATCATTCT-ATGTAAAGAAAAAGTGGGGAGGGGGCAGCAAGACGCGTCACTNATGCCNACAAACNNTTTGTGCCC--CCCCCCCTTCCAAAAAAAATAGAAGAGGGACGGTGCCCC--TCTGG--CACCCGCCCCCACTTTTTGNCNNGNGGGGGGTCCCGTGTTACGCCGTAAGTATAAGTTTTAAATGTACAAAGTGNGNCATGTACACAATTGATATTC--ATTT--AAGTTAGAT-TTAAAGCAATG--AATTTAA-TCCA-AATGCA----------------TGAATANTNNAAACGAAATGC-----T-GTAATATGGGTATTTGGCTGCTCTACAATCACTAAATTAGACAATTACAACAATTATACTTTTAATCGTACCTCCATTAAACTTGAAT-ATCTACAATTGCTTAANACTTTCTGAGAGNCAATTAAAGTTTTAAATAAAAC-TCCAAACATACGGCGAAA----ATAA-AT-----------ACC--CTTCTT----TTG----ACGT-----------GACGTCGCANA-AG-AACGTC-AAATG-GANCAACGATTA-----------TCTTAAACTATAC--TATGT--T-TACAT-ATGT-ATTATA-CATACGT-TAAT---GCTTCCTTACGAACATAC-GATAATCATTTTNTGA-GAAANATAC----ACCCTATGAAGGAA---TTTTGAGGAATATCATTTAA-TTTGAACGCGGGGCCGAAATTGGACCCAAACG
Reference ( gi|2 ) : AGAAAGGGAGGAGGGGGGGGG--GGAACTCAGTGTATAATCCTATC--CATA-TGG-CCTCCGGATGTGAATT-GAAGATATATAAAG--AAATTAATAAAAAGTTCACAAAACTAATTTCTATTTGTGTAAATACGTATAACTAGTATTATATATATACATCTAT--TAAAGGAATTGTCATGTAAGTAATACT---TATCTTTTCTTTAAAAAAAATAATAA-T-GGGTGT-----AAT---T---CAAT-----TATTTTAC-----------AT-----TCTGTATA----------TGTT----------TACGGCATGGG-AAAAATATAGATTTT-TAATGACTTACCACA--TTTCAAATCTTATCACTTCCTATGATAATTAT-----AAGTTTCA-TCCTCAATCCT-ATTGTCATA-A--ACTTTTCAAG-ATC--GT-GTTTTCCGGTT---GTTTT--TTTATGTTTC--ACTAT--TACATGTG-A---ATGAAA---------TT-CA-TGATCTTTTGTT--ACTTT----ATCCAAACGTAGCATATACTTAGTACGTGTATGTGTGTCTGTTAGCTG-AACACGCC--------------A---AC-GCA--------CATTT----------AAAAAATGAAGAAAAGT-GTAT--ATA-TACACGTAATTCCAGTGGCGTG-TTGGG-CTAAAAAAAAAGTCAGGGGACACA-AA--CTATCAATAAA--CCTGGATTAAAAGGGGGGGGGGACA-CAAACTTTAAAAA--AAATTG-CAAAGCAATAAGCAAAAGATAGAGAAAATAAGA-GATGGACATAGACCTAACACAA-CGATTCCT---------AT-CA-AATAC-GG-TGAC-CA-TCC----TA-TAT----TT-CAAA-GATCCT--CGCCGAT---ATTC-CAGATACTTTTTAC-TTCAAAGGTCCG--ATAGTTCGA-AT---AGACGCCATTGATGTCGGAGAA-AAGCTGTAA-----T--------TTTTTAAAACTTTATTTG-ACATTTAACGCT-----------TT-------------AGATAAT-AATTGAAATCCAT-TCAAATGAAATATGATAATAAAAAAAGAATAATT-ACCTTGTCAGA-TG-CGTGGATAAAGCAGG-A----TA-AC--------GATG-CATC---ATCATAAATAGAGCATAACCCTAACTCG--GT----ACAA--AAATA-TCACA-T-GAAT-CGGAGAAATATGTTATAATACATGCAA-GAAAT-AATGTTTTTGA--CA-ACTGA---GAA-CCTGCATATTAGAATTG--GTATCCTTTT------GAT------TC-CTCAT-----CTGACCATTCT-ATGTAAAAGAAAAATGGGGAGGGGGCCACAA-AC-C--CACTTATGCCAAAAAACGATTTGTGCCCGTCCCCCCCTTCC---AAAAAT----GAGAGAC-GTGCCCCCGTCTGAAACACCCGCCCCC-CCGTTTGT-CGACG------CCCGTGTTACATC-TGAGTATAAGTTT--AATGTAGAAA-TGTGTCATGTACACAATTGATATTCCAGTTTTAAAGTTAGAT-TTAAAACAATGCCAATTTAA-TCCA-AATGTAA------------TGCTGAATAGTTCAATCGAAGTAC----AT-GTAATAT--G-----GGCTGCTCTGCAATCACTAAAT---ACAATTAC-ACAATTAT--TTTTAATCGTAGCTCTGTTAAAA-TGAATCATCTACAATTGATTACAAATTTCTAAGAGTCGATTAAAGTCT--AATAAAACCTCCAAACATTCGGCGAAA----ATAA-AT-----------ACC--CTTCTT----TT-----ACGT-----------GACGTCACACAGAGTAACGTCAAAATGCAAACAACG-TTA-----------TCTTAAACTATAC--TATAT--T-TACAT-ATGT-ATTATA-CATACGT-TAAT---GCTTCCTTACGAAAATAT-GATAATCATTTTATAACAAAACATAC----ACCTTAT-AAGGAAT--TTTTGAGGAATATCATTTAA-TTTGAATGCGGGGCCAAAATTGGACCCAAACGA
gi|5 : AGAAAGGG----GGGGGGGGGTCGAAACAC------CAAACATATC--CTTA-TGG-CCTCCGGATGTGAATTAGAAGATATATAAA-----ATTGATATATAGTTCA---AACTA--TTTTATTTGCGTAAATACGTATA----------------------TAT--TAAAGGAATTGTCATGTAAGAAATAAT---TATCTTTTCTTTAAGAAAAA--ATAA-T-GGGTGTACATAAATATATACACAATCTGTTTATGTTACGACATCGGAAAATA----CCTGTATAGATTTTTTGCTGTTGT--------TATGAC-TGTGTCAAAATA-ATGTTCTATAA-GACTTACCACA--TTTCAAATCTTATCACTTCCTA-------TAT-----CAGATCCA-TTTCCAATCCTGATTGTCCTATA--CCTTTTCAAG-ATCCGGTCTTTTTTTGGTTTGCATTTTTGTTTATCTTTC--AC-ATTCTACATCTG-ATCCATGGAATTT------TT-CA-TGATCTTT--TT--AC-TT----ATCC-AACGTAGCAT----TTATTA---GTATGTGTGCCT-TT-GCTG-AACACGCC--------------A---AC-GCA--------CTTTTTA--------AAAAAATGAAG-AAAGT-GTAT--ATA-TACACAT
gi|1 : ccaccaactcgtgtgggtctGGGGG--GGGATCC---------TCCTCTCGCCATAATGGGCCTC--GATGTGAATA-GAAGATACATCAAATTAAATTA-TA----GTTCA--AAACT-------ATTT----------------TTA--ATT-TGCATATACGTCTATATTATAAGAATTGTCA-GTAAG-AAT-CTCATTATCTTTTCTTTTAAAAAAA-AATAAGTGGGGTGT-----A
gi|11 : ggaatctttaaaaaataaaacgttatgggttaaccctcgggttttagccgttatatttgggcagcaagatgattttattttattcatttatctcaaggatgactttatctaaacgcatctaccactacttataaaaggggacgatgatgggcatcggcatgttaaaatgatggtaaatctaccgggcatttcaaaatatgtggggctcaagttccttggctgcatgtatacatgtgcctggtaaaaatttttgttttgcagtgaatttcttatagcatgtttctaatgtattagattatggtcctacgggttatttaaactaaaaaagtagtacaatgtataggcccataaccaagctataacgctattgttactattttctttcaataaatctgaacactgtgcataatgttaagtagagagcattgatttttcatacatacgttgcttttgcacaaaccacgaactcgtgcgatctgtaagggggggggggggtgtttcgcaattaccaaaatccttggctttgtgcgctaaggagattatactgatttaatgaagcagtctttgaaatattggacatacgattgttatatcttccattttcaaattacagtatgcataattatatgtgattataattgcaaatgctttcttcatactcaatatattcacatcatagcaacaagctgctgaaaatgcatcaatatgtcatacaaagtttactgtttaaaactatcatattttgccgttcatacgtggaaactaaccccggaaacgaatattagacagtaaaatagtaagatttattcttccaccgattgtccagctttgactaaaaatttaggatagagcgtttacaagagatacAAAATA-TAA-T-GGGTGT-----AA---------AGA-----TATATTAT-----------ATACAACTCTGTATA----------CATCGGCGATATAATACGACATCGG-AAAAcataagatatctcatatattcactctttatactcgcaatagtgcataataattgttacattgtacgttccggaaatggttttgctgttaagaacatatgtgactgtgtaaaaataatttgttacatgtactagtacataagacttttatatcaaacttttccaatcttgtcattcttatattatccctcaggtttcaattctcaattctattgtataaggacttcggttttttgggctgttttttttttttaaacattaattctggaatgaaaatctgtaatttcagtgatctttttcttaactttttttatccaaacgtagcattacttagtagggtgctttggctacagcacgcctatagtaagtaattaactgcactttgaaagaaaaaaaaaaatgaagaaaggtttattaatttacacataaatccatgcttggttggggctaaaaaagtgagggggccaagtcctatcataaattcttggttaaaaaggagggagcagcaaaattaaaaaattggcagcaataaaagattcagaaaatagtagagggcatagaccttaaacaggcgattccttcaaactgtatcaaacacgggtgacgcatccaatataatatttcaaagattccggcgccgattaggtccgagactttttttaggttcaaaggtccgatagttcgatagcgccataagctgtaaaaaaattcttaaactttatttgacatttcacgttttgaggcgtgacgttagataattaattgattcatgtcaaatgaaaaatgattatccaaaattcattacattgtccgaattcgtggatcagcaagtattaagatggcatcgtaatcataaatgagctaaagctaactcatcacacaattaaatatatggattcggagagaatgttattaatgaaagaaatagttttgagcagctgatgagaacgcaattaaaatgagtattttttttaacgtggtatctcatctgatatttatgtaaagaaaaagtgaaagggggcacaaccgtcacttatgcccacaaactatttgtgcccccccttccaaaaaaaatagaagagggacggtgcccctctccgctcccactttttgtcctacgcctgtgttaagtatagttatgtacaaagtgggccatgtacacaatgatattcatttaagttagatcttaaaagaatttaatccaaattaaataagctaaacgaaatgctgaaatagttatatgggggctgctcacatcatatacaattacaacaattatcacgcttacgcaggtct
gi|1 : ATA-AGACTTT-TA------TATCAAACTTTTCCAATCTTGTCA-TTCTTAT----ATTATCCCTCAGGTTTCAATTCTCAATTCT-ATTGT-ATA-AGGACTT---------C--GG-TTTTTTGGGCT---GTTTT--TTT-TTTTTA--AACAT--TAATTCTGGA---ATGAAAATCTGTAATTT-CAGTGATCTTTTTCTTAACTTTTTTTATCCAAACGTAGCAT-TACTTAGTAGG-------GTG-CT-TTGGCTACAGCACGCCTATAGTAAGTAATTA---ACTGCA--------C-TTTGAAAGAAAAAAAAAAATGAAGAAAGGT-TTATTAATT-TACACATAAATCCA-TG-CTTGGTTGGGGCTAAAAAA---GTGAGGGGGC-CA-AGTCCTATCA-TAAATTCTTGG-TTAAAAAGGAGGGAG--CAGCAAAATT---AAA--AAATTGGCA--GCAATAA----AAGATTCAGAAAATAGTA-GA-GGGCATAGACCTTAAACAGGCGATTCCTTCAAACTGTAT-CA-AACAC-GGGTGACGCA-TCCAATATAATAT----TT-CAAA-GATTCCGGCGCCGATTAGGTCC-GAGACTTTTTTTAGGTTCAAAGGTCCG--ATAGTTCGA--T---AG-CGCCAT--------------AAGCTGTAAAAAAAT--------TCTT--AAACTTTATTTG-ACATTTCACGTT-----------TTGAGGCGTGACGTTAGATAATTAATTGA--TTCATGTCAAATGAAAAATGATTATCCAAAAT---TCATT-ACATTGTCCGAATT-CGTGGATCA-GCAAGTA----TT-AA--------GATGGCATCGTAATCATAAAT-GAGC-TAAAGCTAACTCATCAC----ACAATTAAATA-T---A-T-GGATTCGGAGAGA-ATGTTAT--TA-ATGAAA-GAAAT-AGT---TTTGAG-CA-GCTGATGAGAA-C--GCA-ATTAAAATGA--GTATTTTTTTTAACGTGGT------AT-CTCAT-----CTGAT-ATT-T-ATGTAAAGAAAAAGTGAA-AGGGGGC-ACAA--C-CGTCACTTATGCCCACAAACTATTTGTG-----CCCCCCCTTCCAAAAAAAATAGAAGAGGGACGGTGCCCC--TCT-------CCGCTCCCACTTTTTGTCCTACG------CCTGTGTTA-------AGTAT-AGTT----ATGTACAAAGTGGGCCATGTACACAA-TGATATTC--ATTT--AAGTTAGATCTTAAAA----G--AATTTAA-TCCA-AAT-------------------TAAATAAGCTAAACGAAATGCTGAAATAGTTATATGGG-----GGCTGCTC-AC-ATCAT---AT---ACAATTACAACAATTAT--ttttttgctgttagttgtgaccagtttgtaaaataatgtgttacatgtataagattatcactttcaaatcttatacttcttctttatataagtttcattctcaatcctattgtcataactttttcaagtatcggtttttggttgttgttgtgttttttttggtttttgtttttgtttgtgttt
gi|11 : ggaatctttaaaaaataaaacgttatgggttaaccctcgggttttagccgttatatttgggcagcaagatgattttattttattcatttatctcaaggatgactttatctaaacgcatctaccactacttataaaaggggacgatgatgggcatcggcatgttaaaatgatggtaaatctaccgggcatttcaaaatatgtggggctcaagttccttggctgcatgtatacatgtgcctggtaaaaatttttgttttgcagtgaatttcttatagcatgtttctaatgtattagattatggtcctacgggttatttaaactaaaaaagtagtacaatgtataggcccataaccaagctataacgctattgttactattttctttcaataaatctgaacactgtgcataatgttaagtagagagcattgatttttcatacatacgttgcttttgcacaaaccacgaactcgtgcgatctgtaagggggggggggggtgtttcgcaattaccaaaatccttggctttgtgcgctaaggagattatactgatttaatgaagcagtctttgaaatattggacatacgattgttatatcttccattttcaaattacagtatgcataattatatgtgattataattgcaaatgctttcttcatactcaatatattcacatcatagcaacaagctgctgaaaatgcatcaatatgtcatacaaagtttactgtttaaaactatcatattttgccgttcatacgtggaaactaaccccggaaacgaatattagacagtaaaatagtaagatttattcttccaccgattgtccagctttgactaaaaatttaggatagagcgtttacaagagatacggggggggatcctcctctcgccataatgggcctcgatgtgaatagaagatacatcaaattaaattatagttcaaaactatttttaatttgcatatacgtctatattataagaattgtcagtaagaatctcattatcttttcttttaaaaaaaaataagtggggtgtacataagatatctcatatattcactctttatactcgcaatagtgcataataattgttacattgtacgttccggaaatggttttgctgttaagaacatatgtgactgtgtaaaaataatttgttacatgtactagtacTTATCAC---TTTCAAATCTTAT-ACTTCTTCTT-TA--TAT-----AAGTTTCA-TTCTCAATCCT-ATTGTCATA-A--CTTTTTCAAGTATC--G--GTTTT-TGGTT---G--TT--GTTGTGTTTcacgcttacgcaggtct
gi|3 : aaaatataatgggtgtaaagatatattatatacaactctgtatacatcggcgatataatacgacatcggaaaattttttgctgttagttgtgaccagtttgtaaaataatgtgttacatgtataagaTTTTTTGGTT---TTTGT--TTTGTTTTTTTAAC-AT--TA-AT-CG-A---ATGAAA---------TTTCA-TGATCTTTT--T--A-TTT----ATCAAAGTGCA--AT-TACTTAA-----GTATGTGTG-CTTTT-GCTG-AAC-CGCT--------------ATAGAT-ACAGTAATAAGCACTTCGAAA-----AAAAAATGAAGAAAAGTTGTAT--TTAATACACATAAACCCAGTGGCGTG--------------AAAAGTGAGGGGGCACA-A---CTATCA-TAAA--GTTTGGTTAAAAGGGGGAGC---CA-CA--CTTTAAAAACAAAATTGGCAAAGCA-TAAT--AAAGA---AGAAAATAAGAAGATGGGCATAGAC-TAACACAG-TGTTTTTTTACATATGTAT-CA-AATACTGG-TGAC-CA-CTC----TA-TATATATTT-CAAACGATCG---CGCCGAT---AGTC--AGATACTTCT-AG-TTCAAAG-TCGA--ATAGTTGAA-AT---A--------TGA------AGAACAAGCTGTAA-----TAAAAAAAATTCTTAA--CTTTATTTGGACATTTCACGTCATTGGAGTGACTT-------------AGATAAT-AAT-GAAATTC---TTAAATGAA-TATGATTATCAAAA-----TTGTT-AC-TTGTC-GA-TGGCGTGGATCAGTCAGG-A----TATATAAGGGGGGGGGG-CG-----ATTA-AAATAG--C-TAACC-TAACTCG---T----GCAA--AAATAATCATA-T-GGATTCGAGGCAAT-TGTTATGGTACATGCAA-GAAAT-AATGTTTTTGAGACA-GCTGA---GAAACCTGCATATTAAAATTGCAATATTTTTTT------AACGTGGTATC-CTCAT-----CTGATCATTCTCATGTAAAGAAAAAGTGGGGAGGGGGCAGCAAGACGC--CATTAATGCCAA----CATTTTGTGCCC----CCCCCTTCC---AAAA-T----GAGGGAC-GTGCC----TCTGG--CACCT--CCCT-TTTTTTGG-GGGGGGGGGGTCCC----TACGCCGTAAGTATA-GTTTTAAATGTACAAA-TGTGACATGT-CACAATTGATATTC--ATTT--AAGTTAGAT-TTAAA-CAATGC-AATTTAAATTCAGAATGTAAATAACAACGAAATGCTGAATAGTTAAATTGAAGTA--------ATAATAT--ATATTTGGCTGCTCTACAATCACTAAATTAGACAAT-AT-ACAATTATACTTTTAATCGTACCTCCATTAAACTTGAAT-ATCTACAATTGCTTAACACTTTCTGAGAGATAATTAAAGTTTTAAATAAAAA--TCAAACATACGGCG-AA----ATAAGAT-----------ACC--CTTC-T----TT-----ACGT-----------GA-GTCGCACA-AG-AACGTC-AAATGC-ACCAACGATTA-----------TCTT-AACTATAC--TATGT--T-TAC-T-ATGTAATTATA-CATACGTAAAAT---GCTT-CTTACTGACATATGGATAATGATTTTTTATGAAAAC---T----ACC-TATGAAGGAA---TTTTGAGGAATATCATTTAATTTTGAAAGCGGGGC--GAATTGGACCCtttttggtttttgtttttgtttgtgttt
gi|12 : ttttCAGTGGCGTG-CTGGG-CT--CAAATAAGTTAGGGG-CACATAA--TTAccagacaggagcctttaag
gi|9 : GG-GGTGGGGATACGCCAAACACAA-CGATTCCT---------AT-CA-AATAC-GA-TGAC-CATTCC----TA-TAT----TTCCAAA-GG-------GTCGA----AGTC-CAGCGACTCTCTAG-TTCAAAGGTCCGCCATAGTTCGACATTTCAG-CGTCATTGAagacattnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncggattcctattcagaatgcggtgaccatccgatattcacaggactctttagttcaaagatccaatagttcgaatgcttgataattaaga
gi|12 : GATTCCT---------ATTCAGAATGC-GG-TGAC-CA-TCC----------------------------------GAT---ATTCACAGG-ACTCTTTAG-TTCAAAGATCCA--ATAGTTCGA-AT---ccagtgacttagattaaactgtaaattgaattctttcctatgaaatataatcattaaaattaatttaccttgtcagatgcgtaagcgatatatgtaacgatgcatcataaactcggtcaaaagaaaaatgtatagtagattcggagaaatatgtg
gi|9 : cagtggcgtgctgggctcaaataagttaggggcacataattaagacattnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncg-AATTGAATTCT-T-TCCTATGAAATATAATCATTAAAAT----TAATTTACCTTGTCAGA-TG-CGT-----AAGCGAT-ATATGTA-AC--------GATG-CATC---AT-A------------------AACTCG--GTCAAAAGAA--AAATG-T-ATAGTAGATT-CGGAGAAATATGTgcttgataattaaga
gi|14 : ggggtggggatacgccaaacacaacgattcctatcaaatacgatgaccattcctatatttccaaagggtcgaagtccagcgactctctagttcaaaggtccgccatagttcgacatttcagcgtcattgaccagtgacttagattaaactgtaTGCAAAGAAATTGATATCTTTGA--CTTGCTGA---GAA-C-TACATATTAGAATTGA-GTATTTTTTT------TACCA----TCGTTTATTCTAACTGATTCTTCT-ATGTAAAAGAAAg
gi|19 : ttgtgtgcatTTAAAGTTAGA--TTAGAGCAATG-CAATATCA-TCCA-AATGCA------------------AATACTGCAAACGAAATGC-----T-G-AATAtttgtgtttttaaaaaacaaagtggggggggggggtttacaagaaacacaacttgtccccatcctggcccccc
gi|10 : AATTTTCTGAG-GTCAATTAAAGTTTTAAATAAAAC-TCCAAACATATGGCAAAA----ATAA--T-----------ACC--CTTCTT----TTGGCTGACGTCGCAAATGTTGGACGTAGCAAATAGTAAC-TCCAAATG-GATCAAGGATTA-----------TCTTAAACTATAC--TATGT--T-TACAT-ATGT-ATTATA-TATACG--TAAT---GCTT-CTTA-GAACAT-T-GATAATCATTT--TAATGAAAGATAC----ACC-TAT-AAGAA----TTTTGAGG-ATATTATTTAA-TTTGAACGCGGGGCC-GAATTGGACCCAAAat
gi|6 : --AGTAAAAC-TCAAAACATATGTCAAAATAAGATGA-ATTTTAATTTTTAATCGTCTTCTTCATGTTG----ATGT-----------GACGTTGCATA----AACATCAAAATG-ACACAATG-TTAATATAATTTAGTTTAAAACTATATAGTGTAT--T-TACATCATAT-ATTAgaaaccg
gi|6 : aaaaaatatagtgcacgcttgttaAC--TATATAGTGTACAT-GTAT--TTACATCATATAT-TAGTAAAGCCTCTTT-CGAACATAC-GATTATCATTTTCTGA--AAAGATAC----ACCCAGTGAAAGAA---TTTTGAGAAGCATCATCGAA-TTTAGACGCTGGGCCGAATTTGGCCCCGAACGgtaaagcctctnactatatagtgtacatgtatttacatcatatattagtaaagcctctttcgaacatacgattatcattttctgaaaagatacacccagtgaaagaattttgagaagcatcatcgaatttagacgctgggccgaatttggccccgaacgtaccaagtcct
gi|16 : aaaaaatatagtgcacgcttgttaagtaaaactcaaaacatatgtcaaaataagatgaattttaatttttaatcgtcttcttcatgttgatgtgacgttgcataaacatcaaaatgacacaatgttaatataatttagtttaaaactatatagtgtatttacatcatatattagtaaagcctctnAT-TTGA-ATTATT-CATATGT--AAC---GCGTC-TTACGAATATGC-GATATTCATTT-ATGA--ATACATATGATTACTCTAT---GAAATAATTTTGAAGAATATCATTTAC-TTTGGACGAGTGACCAtaccaagtcct
gi|20 : ctgtgttcgtcaAGGAATATCGTTTAA-TTTGAATGCGGCGCCGAAATTGGCCCCAAGCGtt
gi|21 : attatga-TTTGAACGCGGGGCCGAAATTGGACCCAAAcacaaagtcctt
7 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|4 ): GGACACCTTTAAAACCTTTAAAGTAATGAGTTCCCCTAGATTATTTTACGTATATAATATTTGTAGCGAGATGAATTTTAATTTATTTTATTCACATTTATTCAAGGGCTCAGTTCGTCGTTTCAAACTTATATTTCTACATAGTACACAGCACCTACCACTACCATAACAAGGGGAAGGAGTGATCGCATAAATAAAAATTATGGTAAATCTACGACATTCTCAAATAATGTGGGGCCAAGTTCCCTAGCTGTTGCTACAATGTACACAGTAATATATATGTGCCTGTAAAAGTTTTTGTTTTGCAGAATTACTTTACATGTTTTAATGTATTAGATTATGGTCCTATATTTAAAAGTACATTAAAACAACTACCGAACACTATTGGTTACTATTTTCTTCATTAAAATCGTGGAACACGTGCATGTTCAAGTAGAGCATGATATGTTCATTCAATTTAGTAGCGTGTGCATAAACCACCAACCCGTGCGGATCTAGAAAGGGGGGGGGGGTCCGAAACGCCAAACACCTTACATTGTTGCGCTTTGACAAATCCAGGGAGATTATAGTGTTATAATGAAGCCATCTTTGAAATATTGGAATTACGATTGTTCGATATCTTCTTCCATTTTCAAATTACATAATTACGGTGATTATAATACAATGCTTTCTTTAATACTCAATTTTTACTTTACAATAGATAGTGTTCAAAGTAATTATGAATATGTCACGTGATCTTTACTTTTTTTATACAACAAGATGCTGGAAAATACATCAATTGTTATATAAAAAGTCTTACTGTTTAAACTATCTTTATTTCGCCGGTCAATGGAAAACTGGTCGAAAACGAATATAGAAGTTTATTTCCACGATACTCTTTCTGACTAAAGACATTTAGAAAG
Unaligned ( gi|7 ): ATGGTACATCTACCGTGGCTTCTCAATAATGTAGTGCTCGAAGTTCGCCTGTGTTGCTAACACAAGTATACAATGTGCTGTAAAAGTTTTTGTTTTGCAGAATTAATTTACACGTTTTAATGTATTAGATTATGTTCCTACGTGTATTTAAAAACTAAAAGTACATGTATGAAAGTATAAGCTATTTGCTAACTGATTTTCTTCAATAAATCGTGGAACACGTGCATACATGTATCAAGTAGAGGCAATGATTTTCATACATACGGAGGCCTTTTTGCCAACCACCACTCGCTCGTGGCGTATCTAGAAGGGGGGGGGGG
Unaligned ( gi|8 ): AAAATCATAAAACAAACACATTGTCGAAAGAAAGTAGGGGTAACGTCCCCCTGTTGCTACGTGCCTATAGAACAATTCTTGTTTGTACAGTCACCTTACATGTGTTAATTAATACTTCATGTGTACTGGAACGTGTTCTATTTCATTGTCCTATCAAGAAATACATGTAGCCATTATTTACTATTTTCATCCACAAATGCTCATGAAGTAAAGCACGACTTTCACACATGGAAGTCATTTACGCACGGCCCACCCACCGTCCACTTATAGCATTAGTGGCATGTGCACAAATCACGTACGGATCTAAAAGGGGG
Unaligned ( gi|13 ): GGGCTCAATTCTTCGCTTTAAGTTTGCATTCTACAATCATTCACTACTACCTTAAAAAATAATAAACTGAACTTCGCATGTAAAATAATGAAGCAACCACATTGTTAAAAGAATGTGGGGCCCAAGTTTCCCTGTTGCTACGTGCCTATAGAACAATTCTTTGATTTGATTGTACAATCACCTTAATGCGTTAA
Unaligned ( gi|15 ): GTTTATACAACAAGCTGCTAGAAAATGCATGAATTGTCATATAGAGTTTTATTATTTAAAAAACTATCACATTTCGCCGGTCATTGGAAACTGGTCGAAAATGAATACTAGACAGGTAAATTGATGATTATTTCCACGATGATTCTTTGACTAAATTGGACATTTAGCAAGATA
Unaligned ( gi|17 ): GGTAAATCTACGACATTCTCAAAATAATGTGCGGCCAAGTTCCCTAGCTGTTGCTACATGTACAATATATATATGTGTCTGTAAA
Unaligned ( gi|18 ): ACAATTGTTTGATATATCCTTCTTCCATTTTCAATTTACATAATTATCAGTGATTAATTTAATCATTTTCTTCATACTCAATT
Alignments
lowQualScore : 22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 111111111111111111111111111111 11111111111111111111111111111111111111111111111111 1111111111111111111111111111 11111111111111111111111111111111111111111111111111 111111111111111111111111111111111111
lowQualScore : 2222 111111 33333333333333333 11 22 222222222222 11 11 7777777777777777777777777 4444 111 1 1 55555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 2222 222 1 55555555555555 1 1 1 77777777777777777777777777 1111 111 1 11 2222222 111 5555555555 1 44444 2222 11 1 111 2 1 2 1 1 000000000000000000000000000000 33333 22222 1 11 1 3333333333333 1 1 333 1 333333 3333333 22 333 222 1 1 6666666666666 1111 1111 444444444444 11111 111 11 111111 33333333333333333333333333333333333333333333333333 111 11 1 4444444444444444444444444444 1 1 2222222 11 22222 33333 1 2 33 1 1 11111111111111111111111111111111111111111111111111 222222 3333 1 11 1 1 1 11 111 22 22 7777777777777777 22222 1 1 7777777777777777777 1 5555555 111 11 333 4444 2 11 33333333 1 777777777777777777777777777 2 222 2 11 11 1 11 33 1 1 444444444 1111 1 333333333333333333333333333333333333 111111111 2 11 11 2 1 2222 55555555555555 11 2222222 99999999999999999999 2 11 333333333 11 111 111 111 11 111 2222222 2222222 1
lowQualScore : 1111 888888 1 66666666666666666 1 44 6 6 6 11 0 1 666666666666 88 7 88 7 3 4444444444444444444444444 1 7 7 3333 1 0 000 0 0 99999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 2 1111 999 9 8 5 66666666666666 0 0 2 0 22 3 99999999999999999999999999 8 8 8 7777 444 0 33 6666666 777 5555555555 0 33333 55 1111 3 2 33 0 777 3 3 0 0 0 0 0 3 222222222222222222222222222222 22222 55555 3 0 33 0 0 2 2 6666666666666 0 0 2 2 3 000 3 222222 8888888 1 7 22 6 7 7 333 111 0 0 3 2 0 7777777777777 8 8 8 8 8 7777 8 7777 0 8 0 666666666666 99999 0 66 6 444 3 11 88 777777 0 3 11111111111111111111111111111111111111111111111111 22 555 11 0 7777777777777777777777777777 0 0 3 8888888 3 1 00 55555 00000 0 0 33 0 2 2 8 2 0 99999999999999999999999999999999999999999999999999 444444 2222 0 3 66 22 2 0 0 0 777 88 777 33 3 3 33 1 0000000000000000 55555 6 2 0 0 7777777777777777777 2 2 3333333 1 999 22 6 88 6 777 4444 3 6 88 11111111 0 6 333333333333333333333333333 3 999 3 1 1 7 7 88 33 0 3 33 33 0 0 777777777 7777 0 999999999999999999999999999999999999 7 7 444444444 7 3 88 2 88 0 2 44 3 7 1 3 0 2 3 1111 11111111111111 33 4444444 2 2 1 99999999999999999999 0 0 44 1 0 999999999 33 3 000 99 6 6 8 444 444 33 0 111 9999999 1 1111111 0 6 6 5 66
lowQualScore : .... ...... . ................. . .. . . . .. . . ............ .. . .. . . ......................... . . . .... . . ... . . ....................................................................................................................................................................... . .... ... . . . .............. . . . . .. . .......................... . . . .... ... . .. ....... ... .......... . ..... .. .... . . .. . ... . . . . . . . . .............................. ..... ..... . . .. . . . . ............. . . . . . ... . ...... ....... . . .. . . . ... ... . . . . . ............. . . . . . .... . .... . . . ............ ..... . .. . ... . .. .. ...... . . .................................................. .. ... .. . ............................ . . . ....... . . .. ..... ..... . . .. . . . . . . .................................................. ...... .... . . .. .. . . . . ... .. ... .. . . .. . ................ ..... . . . . ................... . . ....... . ... .. . .. . ... .... . . .. ........ . . ........................... . ... . . . . . .. .. . . .. .. . . ......... .... . .................................... . . ......... . . .. . .. . . .. . . . . . . . .... .............. .. ....... . . . .................... . . .. . . ......... .. . ... .. . . . ... ... .. . ... ....... . ....... . . . . ..
lowQualScore : 2222 555555 0 77777777777777777 0 77 7 7 7 33 7 0 333333333333 33 3 33 3 7 3333333333333333333333333 0 3 3 3333 0 7 888 0 0 00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 5 2222 222 2 8 0 88888888888888 0 0 5 0 88 2 22222222222222222222222222 0 0 0 0000 888 0 88 5555555 555 8888888888 0 88888 88 2222 2 5 22 8 555 2 2 0 0 0 0 0 2 000000000000000000000000000000 00000 00000 2 0 88 0 7 5 5 8888888888888 0 0 5 5 2 333 3 777777 3333333 0 3 33 7 3 3 777 777 7 0 2 5 0 0000000000000 0 0 0 0 0 0000 0 0000 8 0 8 666666666666 22222 8 66 4 000 2 00 88 555555 2 2 88888888888888888888888888888888888888888888888888 22 000 22 0 2222222222222222222222222222 0 0 2 2222222 2 2 22 00000 00000 0 0 88 0 5 5 8 0 0 88888888888888888888888888888888888888888888888888 888888 2222 0 2 55 22 5 0 0 0 888 88 555 88 2 2 88 0 2222222222222222 00000 5 5 0 0 5555555555555555555 5 0 0000000 0 777 00 7 33 7 777 3333 3 7 33 00000000 7 0 333333333333333333333333333 7 777 3 0 0 3 3 33 88 0 2 00 88 0 0 000000000 0000 0 444444444444444444444444444444444444 3 3 777777777 3 7 00 5 00 0 5 00 7 3 0 2 0 5 2 2222 88888888888888 88 2222222 5 5 0 55555555555555555555 2 0 22 0 2 555555555 88 2 222 22 7 7 0 888 000 22 8 444 4444444 0 0000000 0 7 7 7 66
consensus : AGAAAGGG----GGGGGGGGGTCGAAACNC------CAAACATNTC-CCATAATGGGCCTCCGGATGTGAATTAGAAGATATATAAAATTAAATTGATA-ATAGTT--CAAAACTA--TTTTATTTGCGTAAATACGTAT-ACTA--ATT-TGCATATACGTC--TATTAAAGGAATTGTCATGTAAGAAATAC--ATTATCTTTTCTTTAAAAAAAA-AATAA-TGGG-TGTACATAA-A--------T---AT---ATA---CACACTCTGTNTATG-TT-G-CGACATCGGAAAATACG-----ACATCGTAT-------AGATT-TTTTGCTGTTG---A-ATAG--T-GTGAC--GTGTGTNAAAATAAT--GT------T-------CTA-----TAAGACTT----ATCACA--TTTCAAATCTTATCACTTCTTAT--T---AT-----AAGTTTCA-TTCTCAATCCT-ATTGTCATA-ANCTTTTCAAG-AT-CGGT------------------T-TTTTTTGG-TTGTT-TTTTTGTT----TTTC--AC-AT--TACATCC--GA---ATGAAA-TCT------TCA-TGATCTTTT-CT--ACTTT----ATCCAAACGTAGCAT-TACTTAGTA---GTATGTGTGCCT-TT-G-CTG-AACACGCC--------------A-----AC--------GCACTTTNAAA-AAAAAA-----TGAAGAAAAGT-GTAT--ATA-TACACATAAATCCAGTGGCGTGNT--GGGCT----AAA-AA-GTNAGGGGGCACAAG--CTATC-ATAAA--CTT-GGTTAAAAGGGGGGGNG--CA-CAAACTTTAAAAA-AAAATTGGCAAAGCAATAA---AAAGAT--AGAAAATAAGA-GATGGGCATAGACCTAACACAG-CGATTCCTT---AC---TGTATCA-AATAC-GG-TGAC-CAT-CC----TA-TAT----TTC-AAA-GATC--C----GCCGAT--AGTCCAGAGACTCTTT---AGTTCAAAGGTCCG--ATAGTTCGA-AT---AG-CGCCATTGAC----G----AGAACAAGCTGTAAA--GAA---------ATGAAA-A-AATTCTTAAAACTTTATTTGGACATTTCA-CGTCATTGG--AGTGACTTG------GA--TTAGATAAT-AA-TTGAATTC--T-T-CAAATGAAATATGATTATC-AA-----AAT-TA--TTA-C-TTGTCA-GATG-CGTGGATCAGGCAGG-ATAT---AC--------GATG----CGTCATCATAAATA--G--C-TAACCCTAACTCGGT----ACAAAAATAA-T-ATA-TGGATTCGGAGAAATATGTTATGGTACAT-GCAA-GAAAT-AATGTTTTTGAG-CAGCTGA---GAA--CTGCATATTAGAATTG--GTATTTTTTTNAC------T------C-CTCAT-----CTGATCATTCT-ATGT-AAAGAA-------------------AAAGTGGGGAGGGGGCAGCAA-AC-C-CCACTTATGCC-A-AAACGATTTGTGCCC--CCCCCCCTTCC---AAAAAT----GAGGGAC-GTGCCCC--TCTG--GCACCCGCTCCC-CTTTTTGTCGNGCG------CCCGTGTTACGCC-TAAGTAT-AGTTT--AATGTACAAA-TGTGNCATGTACACAATTGATATTC--GTTT--AAGTTAGAT-TTAAAACAATGC-AATTT-AATCCA-AATGCA----TAAATAATNCAAACGAAATGC-TGAA-----------------TA---ATATG-G-----GGCTGCTCTACAATCACTAAATTA-ACAATTAC-ACAATTATACTTTTAATCGTANCTCCGTTAAANTTGAATCATCTACAATTGNTTANNANTTTCTGAGAGTCGATTAAAGTTTTAAATAAAA-CTCCAAACATACGGCGAAA----ATAA-AT-----------ACC--CTTCTT----TTGACGTGACGTCGCACA-----------------AGTAACGTCAAAATG-AANCAACG--------ATT--ATCTTAAACTATAC--TATGTTTAC--AT-ATGT-ATTATA-CATACGT-TAAT---GCTTCCTTACGAACATAC-GATAATCATTTTATGA-GAAANATAC----ACCCTATGAAAGAA-TTTTGA-GGAATATCATTTAA-TTTGAACGCGGGGCCGAAATTGGACCCAAACG
Reference ( family-613 ) : AGAAAGGG----GGGGGGGGGTCGGGACNC------CAANCNTNTCGCCNTAATGGGCCTCCGGATGTGAATNAGAAGATACATNAAATTAAATTGATATATAGTT--CAAAACTA--TTTTATTTGCGTAAATACGTAT-ATTA--ATT-TGCATATACGTCTATATTANAGGAATTGTCATGTAAGAAATANTCATTATCTTTTCTTTNAGAAAAA-AATAA-TGGG-TGTA------A--------T---AT---ATA---CACAGNCTGTTTATG-TT-A-CGACATCGGAAAATACA-----ACCCTGTAT-------AGATT-TTTTGCCGTCGNCGATATAA--T-ACGAC--ATNNGTNAAAATAAN--GC------T-------CTA-----TAAGACTT----ATCACA--TTTCAAATCTTATCACTTCTTAT--T---AT-----AAGTTTCA-TTCTCAATCCT-ATTGTCATA-ACCTTTTCAAG-AT-CG--------------------T-TTTTTTGG-TTGTT-TTTTTGTT----TTTN--AC-AT--TA-ATCC--GA---ATGAAA-TCT------TCA-TGATCTTTT-CT--ACTTT----ATCCAAACGTAGCAT-TACTTANTA---GTATGTGTG-CT-TT-G-CTG-AACACGCC--------------A-----AC--------GCACTTTNAAAGAAAAAA-----TGAAGAAAAGT-GTAT--ATA-TACACATAAACCCAGTGGCGTGCT--GGGCT----AAA-AA-GTGAGGGGGCACAAG--CTATC-ATAAATTNTTNGGTTAAAAGGGGGGGNG--CAGCAAANTTTAAAAACAAAATTGGCAAAGCAATAAT--AAAGATTCAGAAAATAGGA-GATGGGCATAGACCTAACACAG-CGATTCCTT---A----TGTATCA-AATAC-GG-TGAC-CAT-CC----TA-TAT----TTC-AAA-GATC--C----GCCGAT--ANTCCAGANACTCTTT---AGTTCAAAGGTCCG--ATAGTTCGA-AT---AG-CGCCATTGA----------AGAACAAGCTGTAAA--AAA---------ATAAAA-AAAATCCTTAAAACTTTATTTGGACATTTCA-CGTCATTGG--AGTGACTTGAGGCGTGACGTTAGATAAT-AA-TTGAATTC--T-T-CAAATGAAATATGATTATC-AA-----AAT-CG--TTA-C-TTGTC--GATG-CGTGGATCAGGCGAG-ATA----AC--------GATG----CGTCATCA-AAAT---G--C-TAA---TAACTCGGT----ACAAAAATA--T-ATA-TGGATTCGGAGAAATATGTTATGGTACAT-GCAA-GAAAT-AATGTCTTTGAG-CAGCTGA---GAA--CTGCATATTAAAATTG--GTATTTTTTTNAC------T------C-CTCAT-----CTGATCATTCT-ATGT-AAAGAA-------------------AAAGTGGGGAGGGGGCAGCAAGACGCGTCACTNATGCCNACAAACNNTTTGTGCCC--CCCCCCCTTCCAAAAAAAATAGAAGAGGGACGGTGCCCC--TCTG--GCACCCGCCCCCACTTTTTGNCNNGNGGGGGGTCCCGTGTTACGCCGTAAGTATAAGTTTTAAATGTACAAAGTGNGNCATGTACACAATTGATATTC--ATTT--AAGTTAGAT-TTAAAGCAATG--AATTT-AATCCA-AATGCA----TGAATANTNNAAACGAAATGC-TG-------------------TA---ATATGGGTATTTGGCTGCTCTACAATCACTAAATTAGACAATTACAACAATTATACTTTTAATCGTACCTCCATTAAACTTGAAT-ATCTACAATTGCTTAANACTTTCTGAGAGNCAATTAAAGTTTTAAATAAAA-CTCCAAACATACGGCGAAA----ATAA-AT-----------ACC--CTTCTT----TTGACGTGACGTCGCANA-----------------AG-AACGTC-AAATG-GANCAACG--------ATT--ATCTTAAACTATAC--TATGTTTAC--AT-ATGT-ATTATA-CATACGT-TAAT---GCTTCCTTACGAACATAC-GATAATCATTTTNTGA-GAAANATAC----ACCCTATGAAGGAA-TTTTGA-GGAATATCATTTAA-TTTGAACGCGGGGCCGAAATTGGACCCAAACG
gi|1 : ----GGGGGGGGATC----CTC------C-----TCTCGCCATAATGGGCCTC--GATGTGAAT-AGAAGATACATCAAATTAAATT-----ATAGTT--CAAAACTA--TTTT---------------------TA--ATT-TGCATATACGTCTATATTATAAGAATTGTCA-GTAAGAA-T-CTCATTATCTTTTCTTTTAAAAAAA-AATAAGTGGGGTGTACATAAGA--------T---ATCTCATA---TATTCACTCTTTATA-CTCG-CAATAGTGCATAATA-ATTGTTACATTGTACGTTCCGGAAATGGTTTTGCTGTTAAGAACATA---T-GTGAC---TGTGTAAAAATAATTTGT------TACATGTACTAGTACATAAGACTTTTATATCAAACTTTTCCAATCTTGTCA-TTCTTATATT---ATCCCTCAGGTTTCAATTCTCAATTCT-ATTGT-ATA-AGGACTTCG-------G--------------------T-TTTTTGGG-CTGTT-TTTTTTTT----TTAA--AC-AT--TA-ATTCTGGA---ATGAAAATCTGTAATTTCAGTGATCTTTTTCTTAACTTTTTTTATCCAAACGTAGCAT-TACTTAGTA---G---G-GTG-CT-TT-GGCTACAGCACGCCTATAGTAAGTAATTA-----ACT-------GCACTTTGAAAGAAAAAAAAAAATGAAGAAAGGT-TTATTAATT-TACACATAAATCCA-TG-CTTGGTTGGGGCT----AAA-AAAGTGAGGGGGC-CAAGTCCTATC-ATAAATTCTT-GGTTAAAAAGGAGGGAG--CAGCAAAATT----AA-AAAATTGGCA--GCAATAA----AAGATTCAGAAAATAGTA-GA-GGGCATAGACCTTAAACAGGCGATTCCTTCAAAC---TGTATCA-AACAC-GGGTGACGCAT-CCAATATAATAT----TTC-AAA-GATT--CCGGCGCCGATTAGGTCC-GAGACTTTTTTTAGGTTCAAAGGTCCG--ATAGTTCGA--T---AG-CGCCAT------------------AAGCTGTAAA--AAA---------AT----------TCTTAAA-CTTTATTTG-ACATTTCA-CGTT-------------TTGAGGCGTGACGTTAGATAATTAA-TTGA-TTCA-TGT-CAAATGAAAAATGATTATCCAA-----AATTCA--TTA-CATTGTCCGAATT-CGTGGATCAG-CAAGTATT----AA--------GATGGCATCGTAATCATAAAT---GAGC-TAAAGCTAACTCATC----ACACAATTAAAT-ATA-TGGATTCGGAGAGA-ATGTTAT--TA-AT-GAAA-GAAAT-AGT---TTTGAG-CAGCTGATGAGAA--C-GCA-ATTAAAATGA--GTATTTTTTTTAA------CGTGGTAT-CTCAT-----CTGAT-ATT-T-ATGT-AAAGAA-------------------AAAGTGAA-AGGGGGCA-CAA--C-CGTCACTTATGCCCACAAACTATTTGTGCCC--C---CCCTTCCAAAAAAAATAGAAGAGGGACGGTGCCCC--TCT-------CCGCTCCCACTTTTTGTCCTACG------CCTGTGT-------TAAGTAT-AGTT----ATGTACAAAGTGGGCCATGTACACAA-TGATATTC--ATTT--AAGTTAGATCTTAAAA----G--AATTT-AATCCA-AAT-------TAAATAAGCTAAACGAAATGC-TGAAA----------------TAGTTATATGGG-----GGCTGCTC-AC-ATCA------TATACAATTACAACAATTAT
gi|10 : ggaatctttaaaaaataaaacgttatgggttaaccctcgggttttagccgttatatttgggcagcaagatgattttattttattcatttatctcaaggatgactttatctaaacgcatctaccactacttataaaaggggacgatgatgggcatcggcatgttaaaatgatggtaaatctaccgggcatttcaaaatatgtggggctcaagttccttggctgcatgtatacatgtgcctggtaaaaatttttgttttgcagtgaatttcttatagcatgtttctaatgtattagattatggtcctacgggttatttaaactaaaaaagtagtacaatgtataggcccataaccaagctataacgctattgttactattttctttcaataaatctgaacactgtgcataatgttaagtagagagcattgatttttcatacatacgttgcttttgcacaaaccacgaactcgtgcgatctgtaagggggggggggggtgtttcgcaattaccaaaatccttggctttgtgcgctaaggagattatactgatttaatgaagcagtctttgaaatattggacatacgattgttatatcttccattttcaaattacagtatgcataattatatgtgattataattgcaaatgctttcttcatactcaatatattcacatcatagcaacaagctgctgaaaatgcatcaatatgtcatacaaagtttactgtttaaaactatcatattttgccgttcatacgtggaaactaaccccggaaacgaatattagacagtaaaatagtaagatttattcttccaccgattgtccagctttgactaaaaatttaggatagagcgtttacaagagatacATTTTCTGAG-GTCAATTAAAGTTTTAAATAAAA-CTCCAAACATATGGCAAAA----ATAA--T-----------ACC--CTTCTT----TTGGC-TGACGTCGCAAATGTTGGACGTAGCAAATAGTAACTCC-AAATG-GATCAAGG--------ATT--ATCTTAAACTATAC--TATGTTTAC--AT-ATGT-ATTATA-TATACG--TAAT---GCTT-CTTA-GAACAT-T-GATAATCATTTTA--ATGAAAGATAC----A-CCTAT--AAGAA-TTTTGA-GG-ATATTATTTAA-TTTGAACGCGGGGCCG-AATTGGACCCAAAcacgcttacgcaggtct
gi|11 : aAAAA-TATAA-TGGG-TGTA------AAGATATATT---AT---ATA---CA-ACTCTGTATACA-TC-GGCGATAT-----AATACG-----ACATCGGA--------AAATT-TTTTGCTGT--------TAG--TTGTGACCAGTTTGT-AAAATAAT--GTGTTACAT-------GTA-----TAAGA-TT----ATCAC---TTTCAAATCTTAT-ACTTCTTCT--TTATAT-----AAGTTTCA-TTCTCAATCCT-ATTGTCATA-ACTTTTTCAAGTAT-CGGTTTTTGGTTGTTGTTGTGTT-TTTTTTGG-TTTTTGTTTTTGTT----Tgaaaccg
gi|12 : CAGTGGCGTGCT--GGGCTC---AAATAA-GTTA-GGGGCACAgtgttt
gi|12 : GATTCCT----A----T---TCAGAATGC-GG-TGAC-CAT-CC----GA-TAT----T-C-A--------------------------CAG-GACTCTTT---AGTTCAAAGATCCA--ATAGTTCGA-AT---taattaagacattnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncggattcctattcagaatgcggtgaccatccgatattcacaggactctttagttcaaagatccaatagttcgaatgcttgataattaaga
gi|14 : cagtggcgtgctgggctcaaataagttaggggcacataattaagacattnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncgGTGCATTGCAAAGAAATTGATATCTTTGAC-TTGCTGA---GAA--CTACATATTAGAATTGA-GTATTTTTTTTACCA----T------CGTTTATTCTAACTGATTCTTCT-ATGTAAAAGAAATTTGTGTTTTTAAAAAACAAAGTGGGGGGGGGGgcttgataattaaga
gi|16 : ttgtC--TGTGTTCGTCAAT-TTGA-ATTATT-CATATGT--AAC---GCGTC-TTACGAATATGC-GATATTCATTT-ATGA--ATACATATGATTACTCTATGAAATAA-TTTTGA-AGAATATCATTTAC-TTTGGACGAGTGACC--AATTggtttacaagaaacacaacttgtccccatcctggcccccc
gi|19 : TTA--AAGTTAGAT-T-AGAGCAATGC-AATAT-CATCCA-AATGCA------AATACTGCAAACGAAATGC-TG--------------------A---ATA
gi|2 : AGAAAGGGAGGAGGGGGGGGG--GGAACTCAGTGTATAATCCTAT--CCAT-AT-GGCCTCCGGATGTGAATT-GAAGATATATAAAG--AAATTAATAAAAAGTTCACAAAACTAATTTCTATTTGTGTAAATACGTATAACTAGTATTATATATATACATC--TATTAAAGGAATTGTCATGTAAGTAATAC---TTATCTTTTCTTTAAAAAAAATAATAA-TGGG-TGTA------A--------TTCAAT----TATTTTACATTCTGTATATGTTT-A-CGGCATGGGAAAA--------------ATAT-------AGATT-TTT-----------A-ATGACTT-ACCAC--AT---TTCAAAT----------------------------------CTT----ATCAC---TTCC---TATGATAA----TTAT-------------AAGTTTCA-TCCTCAATCCT-ATTGTCATA-AACTTTTCAAG-AT-CG--------------------TGTTTTCCGG-TTGTT-TTTTTATG----TTTC--ACTAT--TACATGT--GA---ATGAAA---T------TCA-TGATCTTTTGTT--ACTTT----ATCCAAACGTAGCATATACTTAGTACGTGTATGTGTGTCTGTTAG-CTG-AACACGCC--------------A-----AC--------GCACATTT----AAAAAA-----TGAAGAAAAGT-GTAT--ATA-TACACGTAATTCCAGTGGCGTGTT--GGGCTAAAAAAA-AA-GTCAGGGGACACAAA--CTATCAATAAA--CCTGGATTAAAAGGGGGGGGGGACA-CAAACTTTAAAA--AAAATT-GCAAAGCAATAAGCAAAAGATAGAGAAAATAAGA-GATGGACATAGACCTAACACAA-CGATTCC------------TATCA-AATAC-GG-TGAC-CAT-CC----TA-TAT----TTC-AAA-GATCCTC----GCCGAT--ATTCCAGATACTTTTT---ACTTCAAAGGTCCG--ATAGTTCGA-AT---AGACGCCATTGATGTCGG----AGAA-AAGCTGT-------A---------AT---------TTTTTAAAACTTTATTT-GACATTTAA-CG--------------CT------------TTAGATAAT-AA-TTGAAATCCAT-T-CAAATGAAATATGATAATA-AAAAAAGAAT-AA--TTACC-TTGTCA-GATG-CGTGGATAAAGCAGG-ATA----AC--------GATG----CATCATCATAAATAGAG--CATAACCCTAACTCGGT----ACAAAAATA--TCACA-TGAA-TCGGAGAAATATGTTATAATACAT-GCAA-GAAAT-AATGTTTTTGA--CAACTGA---GAAC-CTGCATATTAGAATTG--GTATCCTTTTGAT------T------C-CTCAT-----CTGACCATTCT-ATGT-AAAAGA-------------------AAAATGGGGAGGGGGCCACAA-AC---CCACTTATGCCAAAAAACGATTTGTGCCCGTCCCCCCCTTCC---AAAAAT----GAGAGAC-GTGCCCCCGTCTGAAACACCCGCCCCC-CCGTTTGTCGA-CG------CCCGTGTTACATC-TGAGTATAAGTTT--AATGTAGAAA-TGTGTCATGTACACAATTGATATTCCAGTTTTAAAGTTAGAT-TTAAAACAATGCCAATTT-AATCCA-AATGTAATGCTGAATAGTTCAATCGAAGTACATG-------------------TA---ATATG-------GGCTGCTCTGCAATCACTAAAT---ACAATTAC-ACAATTAT--TTTTAATCGTAGCTCTGTTAAAA-TGAATCATCTACAATTGATTACAAATTTCTAAGAGTCGATTAAAGTCT--AATAAAACCTCCAAACATTCGGCGAAA----ATAA-AT-----------ACC--CTTCTT----TT-ACGTGACGTCACACAG----------------AGTAACGTCAAAATGCAAACAACG---------TT--ATCTTAAACTATAC--TATATTTAC--AT-ATGT-ATTATA-CATACGT-TAAT---GCTTCCTTACGAAAATAT-GATAATCATTTTATAACAAAACATAC----ACCTTAT-AAGGAATTTTTGA-GGAATATCATTTAA-TTTGAATGCGGGGCCAAAATTGGACCCAAACGat
gi|20 : A-TTATGAAGGAATATCGTTTAA-TTTGAATGCGGCGCCGAAATTGGCCCCAAGCGa
gi|21 : -TTTGAACGCGGGGCCGAAATTGGACCCAAAcacaaagtcctt
gi|3 : --------------------T-TTTTTTGG-TTTTT-GTTTTGTT----TTTTTAAC-AT--TA-ATC---GA---ATGAAA-T-T------TCA-TGATCTTTT--T--A-TTT----ATCAAAGTGCA--AT-TACTTA--A---GTATGTGTG-CT-TTTG-CTG-AAC-CGCT--------------ATAGATACAGTAATAAGCACTTCGAAA-AAAAAA-----TGAAGAAAAGTTGTAT--TTAATACACATAAACCCAGTGGCGTG--------------AA-AA-GTGAGGGGGCACAA---CTATC-ATAAA--GTTTGGTTAAAAGGGGGAGC------CACACTTTAAAAACAAAATTGGCAAAGCA-TAAT--AAAGA---AGAAAATAAGAAGATGGGCATAGAC-TAACACAG-TGTTTTTTT---ACATATGTATCA-AATACTGG-TGAC-CAC-TC----TA-TATATATTTC-AAACGATCG-C----GCCGAT--AGTC-AGATACT-TCT---AGTTCAAAG-TCGA--ATAGTTGAA-AT---A--------TGA----------AGAACAAGCTGTAA----------------TAAAA-AAAATTCTTAA--CTTTATTTGGACATTTCA-CGTCATTGG--AGTGACTT-------------AGATAAT-AA-TGAAATTC--T-T--AAATGAA-TATGATTATC-AA-----AAT-TG--TTA-C-TTGTC--GATGGCGTGGATCAGTCAGG-ATAT---ATAAGGGGGGGGGG----CG--ATTA-AAATA--G--C-TAACC-TAACTCG-T----GCAAAAATAATC-ATA-TGGATTCGAGGCAAT-TGTTATGGTACAT-GCAA-GAAAT-AATGTTTTTGAGACAGCTGA---GAAACCTGCATATTAAAATTGCAATATTTTTTTAACGTGGTAT------C-CTCAT-----CTGATCATTCTCATGT-AAAGAA-------------------AAAGTGGGGAGGGGGCAGCAAGACGC--CATTAATGCC----AACATTTTGTG--C--CCCCCCCTTCC----AAAAT----GAGGGAC-GTG--CC--TCTG--GCAC---CTCCCTTTTTTTGG-GGGGGGGGGGTCCC----TACGCCGTAAGTAT-AGTTTTAAATGTACAAA-TGTGACATGT-CACAATTGATATTC--ATTT--AAGTTAGAT-TTAAA-CAATGC-AATTTAAATTCAGAATG------TAAATAAC---AACGAAATGC-TGAATAGTTAAATTGAAGTAATA---ATAT--ATATTTGGCTGCTCTACAATCACTAAATTAGACAA-TAT-ACAATTATACTTTTAATCGTACCTCCATTAAACTTGAAT-ATCTACAATTGCTTAACACTTTCTGAGAGATAATTAAAGTTTTAAATAAAA-AT-CAAACATACGGCG-AA----ATAAGAT-----------ACC--CTTCTT----T--ACGTGA-GTCGCACA-----------------AG-AACGTC-AAATG-CACCAACG--------ATT--ATCTT-AACTATAC--TATGTTTAC---T-ATGTAATTATA-CATACGTAAAAT---GCTT-CTTACTGACATATGGATAATGATTTTTTAT-GAAAACTA-------CCTATGAAGGAA-TTTTGA-GGAATATCATTTAATTTTGAAAGCGGGGC--GAATTGGACCCaggaccaagt
gi|4 : tttAGAAAGGG----GGGGGGGGTCCGAAACGC------CAAACACCTccagacaggagcctttaag
gi|5 : ggacacctttaaaacctttaaagtaatgagttcccctagattattttacgtatataatatttgtagcgagatgaattttaatttattttattcacatttattcaagggctcagttcgtcgtttcaaacttatatttctacatagtacacagcacctaccactaccataacaaggggaaggagtgatcgcataaataaaaattatggtaaatctacgacattctcaaataatgtggggccaagttccctagctgttgctacaatgtacacagtaatatatatgtgcctgtaaaagtttttgttttgcagaattactttacatgttttaatgtattagattatggtcctatatttaaaagtacattaaaacaactaccgaacactattggttactattttcttcattaaaatcgtggaacacgtgcatgttcaagtagagcatgatatgttcattcaatttagtagcgtgtgcataaaccaccaacccgtgcggatctAGAAAGGG----GGGGGGGGGTCGAAACAC------CAAACATATC--CTTA-TGG-CCTCCGGATGTGAATTAGAAGATATATAAAATT-----GATATATAGTT--CAAA-CTA--TTTTATTTGCGTAAATACGTAT-AT-----------------------ATTAAAGGAATTGTCATGTAAGAAATA---ATTATCTTTTCTTTAAGAAAAA-A-TAA-TGGG-TGTACATAA-A--------T---AT---ATA---CACAATCTGTTTATG-TT-A-CGACATCGGAAAATAC---------CTGTAT-------AGATT-TTTTGCTGTTGT----------T-ATGAC---TGTGTCAAAATAAT--GT------T-------CTA-----TAAGACTT----ACCACA--TTTCAAATCTTATCACTTCCTA---T---AT-----CAGATCCA-TTTCCAATCCTGATTGTCCTATACCTTTTCAAG-ATCCGGTC-----------------T-TTTTTTGGTTTGCA-TTTTTGTTTATCTTTC--AC-ATTCTACATCT--GATCCATGGAATTTT------TCA-TGATCTTTT--T--AC-TT----ATCC-AACGTAGCAT----TTATTA---GTATGTGTGCCT-TT-G-CTG-AACACGCC--------------A-----AC--------GCACTTTTTA--AAAAAA-----TGAAG-AAAGT-GTAT--ATA-TACACATtacattgttgcgctttgacaaatccagggagattatagtgttataatgaagccatctttgaaatattggaattacgattgttcgatatcttcttccattttcaaattacataattacggtgattataatacaatgctttctttaatactcaatttttactttacaatagatagtgttcaaagtaattatgaatatgtcacgtgatctttactttttttatacaacaagatgctggaaaatacatcaattgttatataaaaagtcttactgtttaaactatctttatttcgccggtcaatggaaaactggtcgaaaacgaatatagaagtttatttccacgatactctttctgactaaagacatttagaaag
gi|6 : ccaccaactcgtgtgggtctTTAAGTAAAA-CTCAAAACATATGTCAAAATAAGATGA-ATTTTAATTTTTAATCGTCTTCTTCATGTTGATGTGACGTTGCATA--------------------AACATCAAAATG-ACACAATGTTAATATAATTTAGTTTAAAACTATATAGTGTATTTAC--ATCATAT-ATTA
gi|6 : aaaaaatatagtgcacgcttgACTATA---TA-GTGTAC--AT-GTAT--TTACATCATATAT-TAGTAAAGCCTCTTT-CGAACATAC-GATTATCATTTTCTGA--AAAGATAC----ACCCAGTGAAAGAA-TTTTGA-GAAGCATCATCGAA-TTTAGACGCTGGGCCGAATTTGGCCCCGAACGgtaaagcctctnactatatagtgtacatgtatttacatcatatattagtaaagcctctttcgaacatacgattatcattttctgaaaagatacacccagtgaaagaattttgagaagcatcatcgaatttagacgctgggccgaatttggccccgaacgtaccaagtcct
gi|9 : aaaaaatatagtgcacgcttgttaagtaaaactcaaaacatatgtcaaaataagatgaattttaatttttaatcgtcttcttcatgttgatgtgacgttgcataaacatcaaaatgacacaatgttaatataatttagtttaaaactatatagtgtatttacatcatatattagtaaagcctctnGG-GGTGGGGATACGCCAAACACAA-CGATTCCT------------ATCA-AATAC-GA-TGAC-CATTCC----TA-TAT----TTCCAAA-GG---------GTCGA---AGTCCAGCGACTCTCT---AGTTCAAAGGTCCGCCATAGTTCGACATTTCAG-CGTCATTGACCAGTGACTTAGATTAAACTGTAAATTGAATTCTTTCCTATGAAATATAATCATTAAAA-TTAATTTtaccaagtcct
gi|9 : TAGTTCGACATTTCAGCGTCATTGACCAGTGACTTA------GA--TTAAACTGT-AAATTGAATTC--T-TTCCTATGAAATATAATCATT-AA-----AAT-TAATTTA-CCTTGTCA-GATG-CGT-----AAGCGAT-ATATGTAAC--------GATG----CATCAT-----------------A----AACTCGGTCAAAAGAAAAATG--T-ATAGTAGATTCGGAGAAATATGTaccttgtcagatgcgtaagcgatatatgtaacgatgcatcataaactcggtcaaaagaaaaatgtatagtagattcggagaaatatgtg
6 sequences could not be aligned to this reference sequence:
Unaligned ( gi|7 ): ATGGTACATCTACCGTGGCTTCTCAATAATGTAGTGCTCGAAGTTCGCCTGTGTTGCTAACACAAGTATACAATGTGCTGTAAAAGTTTTTGTTTTGCAGAATTAATTTACACGTTTTAATGTATTAGATTATGTTCCTACGTGTATTTAAAAACTAAAAGTACATGTATGAAAGTATAAGCTATTTGCTAACTGATTTTCTTCAATAAATCGTGGAACACGTGCATACATGTATCAAGTAGAGGCAATGATTTTCATACATACGGAGGCCTTTTTGCCAACCACCACTCGCTCGTGGCGTATCTAGAAGGGGGGGGGGG
Unaligned ( gi|8 ): AAAATCATAAAACAAACACATTGTCGAAAGAAAGTAGGGGTAACGTCCCCCTGTTGCTACGTGCCTATAGAACAATTCTTGTTTGTACAGTCACCTTACATGTGTTAATTAATACTTCATGTGTACTGGAACGTGTTCTATTTCATTGTCCTATCAAGAAATACATGTAGCCATTATTTACTATTTTCATCCACAAATGCTCATGAAGTAAAGCACGACTTTCACACATGGAAGTCATTTACGCACGGCCCACCCACCGTCCACTTATAGCATTAGTGGCATGTGCACAAATCACGTACGGATCTAAAAGGGGG
Unaligned ( gi|13 ): GGGCTCAATTCTTCGCTTTAAGTTTGCATTCTACAATCATTCACTACTACCTTAAAAAATAATAAACTGAACTTCGCATGTAAAATAATGAAGCAACCACATTGTTAAAAGAATGTGGGGCCCAAGTTTCCCTGTTGCTACGTGCCTATAGAACAATTCTTTGATTTGATTGTACAATCACCTTAATGCGTTAA
Unaligned ( gi|15 ): GTTTATACAACAAGCTGCTAGAAAATGCATGAATTGTCATATAGAGTTTTATTATTTAAAAAACTATCACATTTCGCCGGTCATTGGAAACTGGTCGAAAATGAATACTAGACAGGTAAATTGATGATTATTTCCACGATGATTCTTTGACTAAATTGGACATTTAGCAAGATA
Unaligned ( gi|17 ): GGTAAATCTACGACATTCTCAAAATAATGTGCGGCCAAGTTCCCTAGCTGTTGCTACATGTACAATATATATATGTGTCTGTAAA
Unaligned ( gi|18 ): ACAATTGTTTGATATATCCTTCTTCCATTTTCAATTTACATAATTATCAGTGATTAATTTAATCATTTTCTTCATACTCAATT
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 111111111111111111111111111111 1111111111111111111111111111111111111111111111111111 111111111111111111111
lowQualScore : 2222 222222 222 2 11 333333333333 1 11 11 6666666666666 11 11 11 1 1 11 1 3333 11 11 11 1 1 2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 2222 222 1 55555555555555 1 1 11111 1111 555555555555555555 1111 111 1 11 1 2222 111 5555555555 1 44444 2222 11 111 1 1 1 000000000000000000000000000000 4444444444 1 11 1 3333333333333 1 1 1 222222222 1 22 1 2222 1 11 1 22222 333 11 666666666666 1111 1111 444444444444 111 111 11 111111 4444444444444444444444444444444444444444444444444444 2 1 5555555555555555555555 1 1 2222222 11 22222 1111 2 1 1 1 555555555555555555555555555 33333333333 2222 11111 1 11 1 1 1 11 111 22 22 7777777777777777 22222 1 1 7777777777777777777 222222 1 1111 1 1111 1 44444 3333 2222 1 11 33333333 1 33333 11 2222222 1 222 1 111 11 1 11 1 1 444444444 1111 1 11 000000000000000000000 22 444 1 11 11 1 1 2222 55555555555555 11 2222222 88888888888888888888888 11 333333333 11 111 111 111 11 111 2222222 2222222 1
lowQualScore : 1111 77 33 1 888888 333 3 1 111 7 3 6 44 222222222222 3 88 7 88 7 3 1111111111111 3 88 7 44 33 0 0 8 33 0 0000 2 33 00 1 66 0 2 2 3 5555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 2 1111 999 9 8 5 66666666666666 0 0 2 55555 3 4444 2 8 999999999999999999 3 8 8 7777 444 0 33 5 4444 777 5555555555 0 33333 55 1111 3 2 33 8 777 3 3 0 0 0 3 222222222222222222222222222222 5555555555 3 0 33 0 2 2 4444444444444 0 0 1 0 3 333333333 0 33 0 0000 0 5 77 0 5 5 5 11111 5 333 8 2 2 11 333333333333 0 8 8 8 8 8 7777 8 7777 0 8 0 666666666666 666 0 5 6 444 3 11 88 777777 0 3 6666666666666666666666666666666666666666666666666666 0 3 3 2 1 0 7777777777777777777777 0 0 3 8888888 3 1 00 55555 8888 0 0 9 0 0 2 2 2 2 999999999999999999999999999 3 3 11111111111 6 1111 99999 0 3 66 22 2 0 0 0 33 88 777 33 3 3 33 1 0000000000000000 55555 6 2 0 0 7777777777777777777 2 888888 0 8888 0 8888 5 66666 0000 8888 3 6 88 11111111 3 33333 33 6 3333333 3 555 3 1 7 7 999 33 0 66 2 22 0 0 333333333 2222 0 33 222222222222222222222 88 7 7 7 444 7 3 88 1 66 5 1 22 1 7 0 3 0 2 3 1111 11111111111111 33 4444444 2 2 00000000000000000000000 6 9 00 1 0 999999999 33 3 000 99 6 6 8 444 444 33 0 111 9999999 1 1111111 0 6 6 5 66
lowQualScore : .... .. .. . ...... ... . . ... . . . .. ............ . .. . .. . . ............. . .. . .. .. . . . .. . .... . .. .. . .. . . . . .................................................................................................... . .... ... . . . .............. . . . ..... . .... . . .................. . . . .... ... . .. . .... ... .......... . ..... .. .... . . .. . ... . . . . . . .............................. .......... . . .. . . . ............. . . . . . ......... . .. . .... . . .. . . . . ..... . ... . . . .. ............ . . . . . . .... . .... . . . ............ ... . . . ... . .. .. ...... . . .................................................... . . . . . . ...................... . . . ....... . . .. ..... .... . . . . . . . . . ........................... . . ........... . .... ..... . . .. .. . . . . .. .. ... .. . . .. . ................ ..... . . . . ................... . ...... . .... . .... . ..... .... .... . . .. ........ . ..... .. . ....... . ... . . . . ... .. . .. . .. . . ......... .... . .. ..................... .. . . . ... . . .. . .. . . .. . . . . . . . .... .............. .. ....... . . ....................... . . .. . . ......... .. . ... .. . . . ... ... .. . ... ....... . ....... . . . . ..
lowQualScore : 2222 22 22 0 888888 888 0 0 222 3 3 7 77 000000000000 3 33 3 33 3 7 3333333333333 7 33 3 00 22 0 0 8 88 0 8888 0 88 22 0 55 0 8 5 5 2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 5 2222 222 2 8 0 88888888888888 0 0 5 88888 2 0000 5 0 000000000000000000 8 0 0 0000 000 0 88 0 5555 555 8888888888 0 88888 88 2222 2 5 22 8 555 2 2 0 0 0 2 000000000000000000000000000000 8888888888 2 0 88 0 5 5 8888888888888 0 0 0 0 2 555555555 0 88 0 0000 0 8 55 0 2 8 8 00000 8 222 0 8 2 22 222222222222 8 0 0 0 0 0 0000 0 0000 8 0 8 666666666666 666 8 6 4 000 2 00 88 555555 2 2 5555555555555555555555555555555555555555555555555555 2 2 2 5 2 0 2222222222222222222222 0 0 2 2222222 2 2 22 00000 5555 0 0 2 0 0 5 5 5 5 000000000000000000000000000 2 2 88888888888 5 2222 22222 0 2 55 22 5 0 0 0 55 88 555 88 2 2 88 0 2222222222222222 00000 5 5 0 0 5555555555555555555 5 888888 5 2222 0 1111 0 77777 7777 3333 3 7 33 00000000 3 33333 00 7 7777777 3 777 3 0 3 3 000 88 0 55 5 55 0 0 555555555 5555 0 22 555555555555555555555 33 3 3 3 000 3 3 00 0 55 0 0 00 0 3 7 2 0 5 2 2222 88888888888888 88 2222222 5 5 00000000000000000000000 5 2 88 0 2 555555555 88 2 222 22 7 7 0 888 000 22 8 444 4444444 0 0000000 0 7 7 7 66
consensus : AGAAAGGG----GGGGGGGGGTCGAAACNC------CAAACATNTC-CCATAATGG-CCTCCGGATGTGAATTAGAAGATATATAAAATTAAATTGATA-ATA-GTTCA--AAACTA--TTTTATTTGCGTAAATACGTATA--TA--ATT-TGCATATACGTCTAT--TAAAGGAATTGTCATGTAAGAAATACATTATCTTTTCTTTAAAAAAAA-AATAA-TGGG-TGTACAT--AA-ATATC--ATATA--CA-CTCTGTATACG-TCG-CGACATCGGAAAATA--CG--ACATCGTAT-------AGATT-TTTTGCTGTT--GAAT---TGTGAC---TGTGTNA--AAATAAT--GT------T-------CTA-----TAAGACTT----ATCACA--TTTCAAATCTTATCACTTCTTAT--T---AT-----AAGTTTCA-TTCTCAATCCT-ATTGTCATA-AN--CTTTTCAAG-AT-CGGT-TT------------------TTTTTGG-TTGTT-TTTTTGTT----TTTC--AC-AT--TACATCC--GA---ATGAAA-TCT------TCA-TGATCTTTT-CT--ACTTT----ATCCAAACGTAGCAT-TACTTAGTA---GTATGTGTGCCT-TT-GCTG-AACACGCC--------------A-----AC--------GCACTTTNAAA------AAAAAATGAAGAAAAGT-GTAT--ATA-TACACATAAATCCAGTGGCGTGNT--GGGCT----AAA-AA-GTNA-GGGGGCAC----AAG--CTATC-ATAAA--CTTGG-TTAAAAGGGGGGGNG--CA-CAAACTTTAAAAA-AAAATTGGCAAAGCAATA---A-AAAGAT--AGAAAATAAGA-GATGGGCATAGACCTAACACAG-CGATTCCTT---AC---TGTATCA-AATAC-GG-TGAC-CAT-CC----TA-TAT----TTC-AAA-GATC--C----GCCGAT--AGTCCAGAGACTCTTT---AGTTCAAAGGTCCG--ATAGTTCGA-AT---AG-CGCCATTGAC-----AG-AAC-------AAGCTGTAA---GAA---------AT-AAA-A-AATTCTTAAAACTTTATTT-GACATTTCA-CGTCATT--GG--AGTGACTT--GTTAGATAA-TAA-TTGAATTC--T-T-CAAATGAAATATGATTAT-CAA-----AATT-A--TTACC-TTGTCAG-AT-GCGTGGATCAGNCAGNATAT---AC--------GATG----CGTCATCATAAATG-AGC-TAA-CCTAACTCGGT----ACAAAAAT-AAT-ATA-TGGATTCGGAGAAATATGTTATGGTACAT-GCAA-GAAAT-AATGTTTTTGAG-CAGC---TGAGAA--CTGCATATTAGAATTG--GTATTTTTTTNAC------T------C-CTCAT-----CTGATCATTCT-ATGT-AAAGAA-------------------AAAGTGGGGAGGGGG------CAACAA-ACGCCACTTATG-CC--A-AAAC-ATTTGTG--C--CCCCCCCTTCC---AAAAAT----GAGGGAC-GTGCCCC--TCTG--GCACCCGCTCCC-CTTTTT-----GTCGNGCGCCCGTGTTACGCC-TAAGTAT-AGTTT--AATGTACAAA-TGTGNCATGTACACAATTGATATTC--GTTT--AAGTTAGAT-TTAAAACAATG-CAATTT-AATCCA-AATGCA----TAAATAATNCAAACGAAATGC-TG-AATAGTT------------------ATAT--GGGCTGCTCTACAATCACTAAAT---ACAATTAC-ACAATTATACTTTTAATCGTANCTCCGTTAAANTTGAATCATCTACAATTGNTTANNANTTTCTGAGAGTCGATTAAAGTTTTAAATAAAA-CTCCAAACATACGGCGAAA----ATAA-AT-----------ACC--CTTCTT----TTGACGTGACGTCGCA--------------CA-A---GTAACGTCAAAATG-AANCAACG--------ATT--ATCTTAAACTATAC--TATGTTTAC--AT-ATGT-ATTATA-CATACGT-TAAT---GCTTCCTTACGAACATAC-GATAATCATTTTATGA-GAAANATAC----ACCCTATGAAAGAA-TTTTGA-GGAATATCATTTAA-TTTGAACGCGGGGCCGAAATTGGACCCAAACG
Reference ( family-613 ) : AGAAAGGG----GGGGGGGGGTCGAAACNC------CAAACATNTC-CCATAATGGGCCTCCGGATGTGAATTAGAAGATATATAAAATTAAATTGATA-ATA-GTTCA--AAACTA--TTTTATTTGCGTAAATACGTATA-CTA--ATT-TGCATATACGTCTAT--TAAAGGAATTGTCATGTAAGAAATACATTATCTTTTCTTTAAAAAAAA-AATAA-TGGG-TGTACAT--AA-ATAT---ATACA--CA-CTCTGTNTATG-TTG-CGACATCGGAAAATA--CG--ACATCGTAT-------AGATT-TTTTGCTGTT--GAATA-GTGTGAC--GTGTGTNA--AAATAAT--GT------T-------CTA-----TAAGACTT----ATCACA--TTTCAAATCTTATCACTTCTTAT--T---AT-----AAGTTTCA-TTCTCAATCCT-ATTGTCATA-AN--CTTTTCAAG-AT-CGGT-TT------------------TTTTTGG-TTGTT-TTTTTGTT----TTTC--AC-AT--TACATCC--GA---ATGAAA-TCT------TCA-TGATCTTTT-CT--ACTTT----ATCCAAACGTAGCAT-TACTTAGTA---GTATGTGTGCCT-TT-GCTG-AACACGCC--------------A-----AC--------GCACTTTNAAA------AAAAAATGAAGAAAAGT-GTAT--ATA-TACACATAAATCCAGTGGCGTGNT--GGGCT----AAA-AA-GTNA-GGGGGCAC----AAG--CTATC-ATAAA--CTTGG-TTAAAAGGGGGGGNG--CA-CAAACTTTAAAAA-AAAATTGGCAAAGCAATA---A-AAAGAT--AGAAAATAAGA-GATGGGCATAGACCTAACACAG-CGATTCCTT---AC---TGTATCA-AATAC-GG-TGAC-CAT-CC----TA-TAT----TTC-AAA-GATC--C----GCCGAT--AGTCCAGAGACTCTTT---AGTTCAAAGGTCCG--ATAGTTCGA-AT---AG-CGCCATTGAC----GAG-AAC-------AAGCTGTAAA--GAA---------ATGAAA-A-AATTCTTAAAACTTTATTTGGACATTTCA-CGTCATT--GG--AGTGACTTGGATTAGATAA-TAA-TTGAATTC--T-T-CAAATGAAATATGATTAT-CAA-----AATT-A--TTA-C-TTGTCAG-AT-GCGTGGATCAGGCAGGATAT---AC--------GATG----CGTCATCATAAAT--AGC-TAACCCTAACTCGGT----ACAAAAAT-AAT-ATA-TGGATTCGGAGAAATATGTTATGGTACAT-GCAA-GAAAT-AATGTTTTTGAG-CAGC---TGAGAA--CTGCATATTAGAATTG--GTATTTTTTTNAC------T------C-CTCAT-----CTGATCATTCT-ATGT-AAAGAA-------------------AAAGTGGGGAGGGGG------CAGCAA-ACCCCACTTATG-CC--A-AAACGATTTGTGCCC--CCCCCCCTTCC---AAAAAT----GAGGGAC-GTGCCCC--TCTG--GCACCCGCTCCC-CTTTTT-----GTCGNGCGCCCGTGTTACGCC-TAAGTAT-AGTTT--AATGTACAAA-TGTGNCATGTACACAATTGATATTC--GTTT--AAGTTAGAT-TTAAAACAATG-CAATTT-AATCCA-AATGCA----TAAATAATNCAAACGAAATGC-TG-AATA---------------------ATAT-GGGGCTGCTCTACAATCACTAAATTA-ACAATTAC-ACAATTATACTTTTAATCGTANCTCCGTTAAANTTGAATCATCTACAATTGNTTANNANTTTCTGAGAGTCGATTAAAGTTTTAAATAAAA-CTCCAAACATACGGCGAAA----ATAA-AT-----------ACC--CTTCTT----TTGACGTGACGTCGCA--------------CA-A---GTAACGTCAAAATG-AANCAACG--------ATT--ATCTTAAACTATAC--TATGTTTAC--AT-ATGT-ATTATA-CATACGT-TAAT---GCTTCCTTACGAACATAC-GATAATCATTTTATGA-GAAANATAC----ACCCTATGAAAGAA-TTTTGA-GGAATATCATTTAA-TTTGAACGCGGGGCCGAAATTGGACCCAAACG
gi|1 : ----GGGGGGGGATC----CTC------C-----TCTCGCCATAATGGGCCTC--GATGTGAAT-AGAAGATACATCAAATTAAATT-----ATA-GTTCA--AAACTA--TTTT---------------------TA--ATT-TGCATATACGTCTATATTATAAGAATTGTCA-GTAAGAATCTCATTATCTTTTCTTTTAAAAAAA-AATAAGTGGGGTGTACAT--AAGATATCTCATATATTCA-CTCTTTATAC--TCG-CAATAGTGCATAATAATTGTTACATTGTACGTTCCGGAAATGGTTTTGCTGTTAAGAACATATGTGAC---TGTGTAA--AAATAATTTGT------TACATGTACTAGTACATAAGACTTTTATATCAAACTTTTCCAATCTTGTCA-TTCTTATATT---ATCCCTCAGGTTTCAATTCTCAATTCT-ATTGT-ATA-AGGACTT----------CGGT-TT------------------TTTG-GG-CTGTT-TTTTTTTT----TTAA--AC-AT--TA-ATTCTGGA---ATGAAAATCTGTAATTTCAGTGATCTTTTTCTTAACTTTTTTTATCCAAACGTAGCAT-TACTTAGTA---G---G-GTGCTT-TG-GCTACAGCACGCCTATAGTAAGTAATTA-----ACT-------GCACTTTGAAAGAAAAAAAAAAATGAAGAAAGGT-TTATTAATT-TACACATAAATCCA-TG-CTTGGTTGGGGCT----AAA-AAAGTGA-GGGGGC-C----AAGTCCTATC-ATAAATTCTTGG-TTAAAAAGGAGGGAG--CAGCAAAATT----AA-AAAATTGGCA--GCAATA---A-AA-GATTCAGAAAATAGTA-GA-GGGCATAGACCTTAAACAGGCGATTCCTTCAAAC---TGTATCA-AACAC-GGGTGACGCAT-CCAATATAATAT----TTC-AAA-GATT--CCGGCGCCGATTAGGTCC-GAGACTTTTTTTAGGTTCAAAGGTCCG--ATAGTTCG--AT---AG-CGCCAT----------------------AAGCTGTA-------------------AAA-A-AATTCTT-AAACTTTATTT-GACATTTCA-CGTT-TTGAGG--CGTGAC----GTTAGATAATTAA-TTG-ATTCA-TGT-CAAATGAAAAATGATTATCCAA-----AATTCA--TTA-CATTGTCCGAAT-TCGTGGATCAGCAAGTAT-T---AA--------GATGGCATCGTAATCATAAATG-AGC-TAAAGCTAACTCATC----ACACAATTAAAT-ATA-TGGATTCGGAGAGA-ATGTTAT--TA-AT-GAAA-GAAAT-AG---TTTTGAG-CAGCTGATGAGAA--C-GCA-ATTAAAATGA--GTATTTTTTTTAA------CGTGGTAT-CTCAT-----CTGAT-ATT-T-ATGT-AAAGAA-------------------AAAGT-GAAAGGGGG------CA-CAA-CCGTCACTTATGCCC--ACAAACTATTTGTG-----CCCCCCCTTCCAAAAAAAATAGAAGAGGGACGGTGCCCC--TCT-------CCGCTCCCACTTTTT-----GTCCTACGCCTGTGT-------TAAGTAT-AGTT----ATGTACAAAGTGGGCCATGTACACAA-TGATATTC--ATTT--AAGTTAGATCTTAAAA----G--AATTT-AATCCA-AAT-------TAAATAAGCTAAACGAAATGC-TGAAATAGTT------------------ATATGGGGGCTGCTC-AC-ATCAT---AT---ACAATTACAACAATTAT
gi|10 : ggaatctttaaaaaataaaacgttatgggttaaccctcgggttttagccgttatatttgggcagcaagatgattttattttattcatttatctcaaggatgactttatctaaacgcatctaccactacttataaaaggggacgatgatgggcatcggcatgttaaaatgatggtaaatctaccgggcatttcaaaatatgtggggctcaagttccttggctgcatgtatacatgtgcctggtaaaaatttttgttttgcagtgaatttcttatagcatgtttctaatgtattagattatggtcctacgggttatttaaactaaaaaagtagtacaatgtataggcccataaccaagctataacgctattgttactattttctttcaataaatctgaacactgtgcataatgttaagtagagagcattgatttttcatacatacgttgcttttgcacaaaccacgaactcgtgcgatctgtaagggggggggggggtgtttcgcaattaccaaaatccttggctttgtgcgctaaggagattatactgatttaatgaagcagtctttgaaatattggacatacgattgttatatcttccattttcaaattacagtatgcataattatatgtgattataattgcaaatgctttcttcatactcaatatattcacatcatagcaacaagctgctgaaaatgcatcaatatgtcatacaaagtttactgtttaaaactatcatattttgccgttcatacgtggaaactaaccccggaaacgaatattagacagtaaaatagtaagatttattcttccaccgattgtccagctttgactaaaaatttaggatagagcgtttacaagagatacATTTTCTGAG-GTCAATTAAAGTTTTAAATAAAA-CTCCAAACATATGGCAAAA----ATAA--T-----------ACC--CTTCTT----TTGGC-TGACGTCGCAAATGTTGGACGTAGCA-AATAGTAAC-TCCAAATG-GATCAAGG--------ATT--ATCTTAAACTATAC--TATGTTTAC--AT-ATGT-ATTATA-TATACG--TAAT---GCTT-CTTA-GAACAT-T-GATAATCATTTTA--ATGAAAGATAC----A-CCTAT--AAGAA-TTTTGA-GG-ATATTATTTAA-TTTGAACGCGGGGCCG-AATTGGACCCAAAcacgcttacgcaggtct
gi|11 : aAAAA-TATAA-TGGG-TGTAAAG--AT-ATATT--ATATA--CAACTCTGTATACA-TCGGCGATAT-----AATA--CG--ACATCGGA--------AAATT-TTTTGCTGTT---AGT---TGTGACCAGTTTGT-A--AAATAAT--GTGTTACAT-------GTA-----TAAGA-TT----ATCAC---TTTCAAATCTTAT-ACTTCTTCT--TTATAT-----AAGTTTCA-TTCTCAATCCT-ATTGTCATA-AC--TTTTTCAAGTAT-CGGT-TTTTGGTTGTTGTTGTGTTTTTTTTGG-TTTTTGTTTTTGTT----Tgaaaccg
gi|12 : CAGTGGCGTGCT--GGGCTC---AAATAA-GTTAGGGGCACATAATTAAG--ACATT-NNNNN--NNNNN-NNNNNNNNNNNNNNN--NN-NNNNNNNNNNNNN-NNNNNNNNNNNNNNNNNN---N-NNNNNN--NNNNNNNNNNN-NNNNNNNNNNNNNNNNNNNCGG---ATTCCT----------AT-TCAGAATGC-GG-TGAC-CAT-CC----GA-TAT----T-C-A--------------------------CAG-GACTCTTT---AGTTCAAAGATCCA--ATAGTTCGA-AT---gtgttt
gi|14 : GTGCATTGCAAAGAAATTGATATCTTTGAC-TTGC---TGAGAA--CTACATATTAGAATTGA-GTATTTTTTTTACCA----T------CGTTTATTCTAACTGATTCTTCT-ATGTAAAAGAAATTTGTGTTTTTAAAAAACAAAGTGGGGGGGGGGGGTTTACAAGAA-ACACAACTTGTC-CC--gcttgataattaaga
gi|16 : ttgtC--TGTGTTCGTCAAT-TTGA-ATTATT-CATATGT--AAC---GCGTC-TTACGAATATGC-GATATTCATTT-ATGA--ATACATATGATTACTCTATGAAATAA-TTTTGA-AGAATATCATTTAC-TTTGGACGAGTGACC--AATTcatcctggcccccc
gi|19 : TTA--AAGTTAGAT-T-AGAGCAATG-CAATAT-CATCCA-AATGCA------AATACTGCAAACGAAATGC-TG-AATA---------------------AT
gi|2 : AGAAAGGGAGGAGGGGGGGGG--GGAACTCAGTGTATAATCCTATC-C-ATA-TGG-CCTCCGGATGTGAATT-GAAGATATATAAAG--AAATTAATA-AAAAGTTCACAAAACTAATTTCTATTTGTGTAAATACGTATAACTAGTATTATATATATACATCTAT--TAAAGGAATTGTCATGTAAGTAATAC-TTATCTTTTCTTTAAAAAAAATAATAA-TGGG-TGTA-ATTCAA-TTAT----TTTA--CA-TTCTGTATATGTTTA-CGGCATGGGAAAA-------------ATAT-------AGATT-TTT----------AA------TGAC-------TTACCACAT------T------T-------C--------AAATCTT----ATCAC---TTCC---TATGATAA----TTAT-------------AAGTTTCA-TCCTCAATCCT-ATTGTCATA-AA--CTTTTCAAG-AT-C-GT-GT------------------TTTCCGG-TTGTT-TTTTTATG----TTTC--ACTAT--TACATGT--GA---ATGAAA---T------TCA-TGATCTTTTGTT--ACTTT----ATCCAAACGTAGCATATACTTAGTACGTGTATGTGTGTCTGTTAGCTG-AACACGCC--------------A-----AC--------GCACATTT---------AAAAAATGAAGAAAAGT-GTAT--ATA-TACACGTAATTCCAGTGGCGTGTT--GGGCTAAAAAAA-AA-GTCA-GGGGACAC----AAA--CTATCAATAAA--CCTGGATTAAAAGGGGGGGGGGACA-CAAACTTT-AAAA-AAAATT-GCAAAGCAATAAGCA-AAAGATAGAGAAAATAAGA-GATGGACATAGACCTAACACAA-CGATTCC------------TATCA-AATAC-GG-TGAC-CAT-CC----TA-TAT----TTC-AAA-GATCCTC----GCCGAT--ATTCCAGATACTTTTT---ACTTCAAAGGTCCG--ATAGTTCGA-AT---AGACGCCATTGATGTCGGAG-AA--------AAGCTGT-------A---------AT---------TTTTTAAAACTTTATTT-GACATTTAA-CG----------------CT----TTAGATAA-TAA-TTGAAATCCAT-T-CAAATGAAATATGATAAT-AAAAAAAGAATA-A--TTACC-TTGTCAG-AT-GCGTGGATAAAGCAGGATA----AC--------GATG----CATCATCATAAATAGAGCATAACCCTAACTCGGT----ACAAAAAT-ATC-ACA-TGAA-TCGGAGAAATATGTTATAATACAT-GCAA-GAAAT-AATGTTTTTGA--CAAC---TGAGAAC-CTGCATATTAGAATTG--GTATCCTTTTGAT------T------C-CTCAT-----CTGACCATTCT-ATGT-AAAAGA-------------------AAAATGGGGAGGGGG------CCACAA-A-CCCACTTATG-CCAAA-AAACGATTTGTGCCCGTCCCCCCCTTCC---AAAAAT----GAGAGAC-GTGCCCCCGTCTGAAACACCCGCCCCC-CCGTTT-----GTCGA-CGCCCGTGTTACATC-TGAGTATAAGTTT--AATGTAGAAA-TGTGTCATGTACACAATTGATATTCCAGTTTTAAAGTTAGAT-TTAAAACAATGCCAATTT-AATCCA-AATGTAATGCTGAATAGTTCAATCGAAGTACATG---TA---------------------ATAT--GGGCTGCTCTGCAATCACTAAAT---ACAATTAC-ACAATTAT--TTTTAATCGTAGCTCTGTTAAAA-TGAATCATCTACAATTGATTACAAATTTCTAAGAGTCGATTAAAGTCT--AATAAAACCTCCAAACATTCGGCGAAA----ATAA-AT-----------ACC--CTTCTT----TT-ACGTGACGTCACA--------------CAGA---GTAACGTCAAAATGCAAACAACG---------TT--ATCTTAAACTATAC--TATATTTAC--AT-ATGT-ATTATA-CATACGT-TAAT---GCTTCCTTACGAAAATAT-GATAATCATTTTATAACAAAACATAC----ACCTTAT-AAGGAATTTTTGA-GGAATATCATTTAA-TTTGAATGCGGGGCCAAAATTGGACCCAAACG
gi|20 : A-TTATGAAGGAATATCGTTTAA-TTTGAATGCGGCGCCGAAATTGGCCCCAAGCGa
gi|21 : -TTTGAACGCGGGGCCGAAATTGGACCCAAAcacaaagtcctt
gi|3 : T-TT------------------TTTTTGG-TTTTT-GTTTTGTT----TTTTTAAC-AT--TA-ATC---GA---ATGAAA-T-T------TCA-TGATCTTTT--T--A-TTT----ATCAAAGTGCA--AT-TACTTA--A---GTATGTGTGCTT-TT-GCTG-AAC-CGCT--------------ATAGATACAGTAATAAGCACTTCGAAA------AAAAAATGAAGAAAAGTTGTAT--TTAATACACATAAACCCAGTGGCGTG--------------AA-AA-GTGA-GGGGGCAC----AA---CTATC-ATAAAG-TTTGG-TTAAAAGGGGGAGC---CA-CA--CTTTAAAAACAAAATTGGCAAAGCA-TA---ATAAAGA---AGAAAATAAGAAGATGGGCATAGAC-TAACACAG-TGTTTTTTT---ACATATGTATCA-AATACTGG-TGAC-CAC-TC----TA-TATATATTTC-AAACGATCG-C----GCCGAT--AGTC-AGATACT-TCT---AGTTCAAAG-TCGA--ATAGTTGAA-AT---A--------TGA------AG-AAC-------AAGCTGTAAT--AAA---------A----A-A-AATTCTTAA--CTTTATTTGGACATTTCA-CGTCATT--GG--AGTGACTT-----AGATAA-TAA-TGAAATTC--T-T--AAATGAA-TATGATTAT-CAA-----AATT-G--TTA-C-TTGTC-G-ATGGCGTGGATCAGTCAGGATAT---ATAAGGGGGGGGGG----CG--ATTA-AAAT--AGC-TAA-CCTAACTC-GT----GCAAAAAT-AATCATA-TGGATTCGAGGCAAT-TGTTATGGTACAT-GCAA-GAAAT-AATGTTTTTGAGACAGC---TGAGAAACCTGCATATTAAAATTGCAATATTTTTTTAACGTGGTAT------C-CTCAT-----CTGATCATTCTCATGT-AAAGAA-------------------AAAGTGGGGAGGGGG------CAGCAAGACGCCATTAATG-CC--A-ACAT--TTTGTG--C--CCCCCCCTTCC----AAAAT----GAGGGAC-GTG--CC--TCTG--GCAC---CTCCC-TTTTTTTGGGGGGGGGGGGTCC---CTACGCCGTAAGTAT-AGTTTTAAATGTACAAA-TGTGACATGT-CACAATTGATATTC--ATTT--AAGTTAGAT-TT-AAACAATG-CAATTTAAATTCAGAATG------TAAATAAC---AACGAAATGC-TG-AATAGTTAAATTGAAGTAATAATATATAT-TTGGCTGCTCTACAATCACTAAATTAGACAA-TAT-ACAATTATACTTTTAATCGTACCTCCATTAAACTTGAAT-ATCTACAATTGCTTAACACTTTCTGAGAGATAATTAAAGTTTTAAATAAAA-AT-CAAACATACGGCG-AA----ATAAGAT-----------ACC--CTTCTT----T--ACGTGA-GTCGCA--------------CA-A---G-AACGTC-AAATG-CACCAACG--------ATT--ATCTT-AACTATAC--TATGTTTAC---T-ATGTAATTATA-CATACGTAAAAT---GCTT-CTTACTGACATATGGATAATGATTTTTTAT-GAAAACTA-------CCTATGAAGGAA-TTTTGA-GGAATATCATTTAATTTTGAAAGCGGGGC--GAATTGGACCCaggaccaagt
gi|4 : ttAGAAAGGG----GGGGGGGGTCCGAAACGC------CAAACACCTT-ACATccagacaggagcctttaag
gi|5 : ggacacctttaaaacctttaaagtaatgagttcccctagattattttacgtatataatatttgtagcgagatgaattttaatttattttattcacatttattcaagggctcagttcgtcgtttcaaacttatatttctacatagtacacagcacctaccactaccataacaaggggaaggagtgatcgcataaataaaaattatggtaaatctacgacattctcaaataatgtggggccaagttccctagctgttgctacaatgtacacagtaatatatatgtgcctgtaaaagtttttgttttgcagaattactttacatgttttaatgtattagattatggtcctatatttaaaagtacattaaaacaactaccgaacactattggttactattttcttcattaaaatcgtggaacacgtgcatgttcaagtagagcatgatatgttcattcaatttagtagcgtgtgcataaaccaccaacccgtgcggatctAGAAAGGG----GGGGGGGGGTCGAAACAC------CAAACATATC-C--TTATGG-CCTCCGGATGTGAATTAGAAGATATATAAAATT-----GATATATA-GTTCA--AA-CTA--TTTTATTTGCGTAAATACGTATA----------------------TAT--TAAAGGAATTGTCATGTAAGAAATA-ATTATCTTTTCTTTAAGAAAA--AATAA-TGGG-TGTACAT--AA-ATAT---ATACA--CA-ATCTGTTTATG-TTA-CGACATCGGAAAATA--C------CTGTAT-------AGATT-TTTTGCTGTT--G--T---TATGAC---TGTGTCA--AAATAAT--GT------T-------CTA-----TAAGACTT----ACCACA--TTTCAAATCTTATCACTTCCTA---T---AT-----CAGATCCA-TTTCCAATCCTGATTGTCCTATAC--CTTTTCAAG-ATCCGGTCTT------------------TTTTTGGTTTGCA-TTTTTGTTTATCTTTC--AC-ATTCTACATCT--GATCCATGGAATTTT------TCA-TGATCTTTT--T--AC-TT----ATCC-AACGTAGCAT----TTATTA---GTATGTGTGCCT-TT-GCTG-AACACGCC--------------A-----AC--------GCACTTTT-TA------AAAAAATGAAG-AAAGT-GTAT--ATA-TACACATtgttgcgctttgacaaatccagggagattatagtgttataatgaagccatctttgaaatattggaattacgattgttcgatatcttcttccattttcaaattacataattacggtgattataatacaatgctttctttaatactcaatttttactttacaatagatagtgttcaaagtaattatgaatatgtcacgtgatctttactttttttatacaacaagatgctggaaaatacatcaattgttatataaaaagtcttactgtttaaactatctttatttcgccggtcaatggaaaactggtcgaaaacgaatatagaagtttatttccacgatactctttctgactaaagacatttagaaag
gi|6 : ccaccaactcgtgtgggtctTTAAGTAAAA-CTCAAAACATATGTCAAAATAAGATGA-ATTTTAATTTTTAATCGTCTTCTTCATGTTGATGTGACGTTGCA--------------TA-------AACATCAAAATG-ACACAATGTTAATATAATTTAGTTTAAAACTATATAGTGTATTTAC--ATCATAT-ATTA
gi|6 : aaaaaatatagtgcacgcttgACTATA---TA-GTGTAC--AT-GTAT--TTACATCATATAT-TAGTAAAGCCTCTTT-CGAACATAC-GATTATCATTTTCTGA--AAAGATAC----ACCCAGTGAAAGAA-TTTTGA-GAAGCATCATCGAA-TTTAGACGCTGGGCCGAATTTGGCCCCGAACGgtaaagcctctnactatatagtgtacatgtatttacatcatatattagtaaagcctctttcgaacatacgattatcattttctgaaaagatacacccagtgaaagaattttgagaagcatcatcgaatttagacgctgggccgaatttggccccgaacgtaccaagtcct
gi|9 : aaaaaatatagtgcacgcttgttaagtaaaactcaaaacatatgtcaaaataagatgaattttaatttttaatcgtcttcttcatgttgatgtgacgttgcataaacatcaaaatgacacaatgttaatataatttagtttaaaactatatagtgtatttacatcatatattagtaaagcctctnGG-GGTGGGGATACGCCAAACACAA-CGATTCCT------------ATCA-AATAC-GA-TGAC-CATTCC----TA-TAT----TTCCAAA-GG---------GTCGA---AGTCCAGCGACTCTCT---AGTTCAAAGGTCCGCCATAGTTCGACATTTCAG-CGTCATTGAC----CAGTGACTTAGATTAAACTGTAAATTGAATTCTTTCCTATGAAATATAATCATTAAAA-TTAATTTtaccaagtcct
gi|9 : TAGTTCGACATTTCAGCGTCATT--GACCAGTGACTTAGATTAAACTG-TAAATTGAATTC--T-TTCCTATGAAATATAATCAT-TAA-----AATT-AATTTACC-TTGTCAG-AT-GCGT-----AAGCGATATATGTAAC--------GATG-------CATCATA----------------AACTCGGTCAAAAGAAAAAT--GT-ATAGTAGATTCGGAGAAATATGTaccttgtcagatgcgtaagcgatatatgtaacgatgcatcataaactcggtcaaaagaaaaatgtatagtagattcggagaaatatgtg
6 sequences could not be aligned to this reference sequence:
Unaligned ( gi|7 ): ATGGTACATCTACCGTGGCTTCTCAATAATGTAGTGCTCGAAGTTCGCCTGTGTTGCTAACACAAGTATACAATGTGCTGTAAAAGTTTTTGTTTTGCAGAATTAATTTACACGTTTTAATGTATTAGATTATGTTCCTACGTGTATTTAAAAACTAAAAGTACATGTATGAAAGTATAAGCTATTTGCTAACTGATTTTCTTCAATAAATCGTGGAACACGTGCATACATGTATCAAGTAGAGGCAATGATTTTCATACATACGGAGGCCTTTTTGCCAACCACCACTCGCTCGTGGCGTATCTAGAAGGGGGGGGGGG
Unaligned ( gi|8 ): AAAATCATAAAACAAACACATTGTCGAAAGAAAGTAGGGGTAACGTCCCCCTGTTGCTACGTGCCTATAGAACAATTCTTGTTTGTACAGTCACCTTACATGTGTTAATTAATACTTCATGTGTACTGGAACGTGTTCTATTTCATTGTCCTATCAAGAAATACATGTAGCCATTATTTACTATTTTCATCCACAAATGCTCATGAAGTAAAGCACGACTTTCACACATGGAAGTCATTTACGCACGGCCCACCCACCGTCCACTTATAGCATTAGTGGCATGTGCACAAATCACGTACGGATCTAAAAGGGGG
Unaligned ( gi|13 ): GGGCTCAATTCTTCGCTTTAAGTTTGCATTCTACAATCATTCACTACTACCTTAAAAAATAATAAACTGAACTTCGCATGTAAAATAATGAAGCAACCACATTGTTAAAAGAATGTGGGGCCCAAGTTTCCCTGTTGCTACGTGCCTATAGAACAATTCTTTGATTTGATTGTACAATCACCTTAATGCGTTAA
Unaligned ( gi|15 ): GTTTATACAACAAGCTGCTAGAAAATGCATGAATTGTCATATAGAGTTTTATTATTTAAAAAACTATCACATTTCGCCGGTCATTGGAAACTGGTCGAAAATGAATACTAGACAGGTAAATTGATGATTATTTCCACGATGATTCTTTGACTAAATTGGACATTTAGCAAGATA
Unaligned ( gi|17 ): GGTAAATCTACGACATTCTCAAAATAATGTGCGGCCAAGTTCCCTAGCTGTTGCTACATGTACAATATATATATGTGTCTGTAAA
Unaligned ( gi|18 ): ACAATTGTTTGATATATCCTTCTTCCATTTTCAATTTACATAATTATCAGTGATTAATTTAATCATTTTCTTCATACTCAATT
Alignments
lowQualScore : 111111111111111111111111111111 111111111111111111111111111111111111111111111111
lowQualScore : 2222 3333333333333333333333 1 11 4444444444444 11 11 444444444444444444444444444 11 111 1 1 11 1 333 11 11 11 1 1 777777777777777777777777 1 555555555 111 11 77777777777777777777777777 2222 222 1 33333333333333 1 1 11111 1111 555555555555555555 1111 111 1 11 1 2222 111 5555555555 1 44444 2222 11 111 1 1 1 000000000000000000000000000000 4444444444 1 11 1 3333333333333 1 1 1 222222222 1 22 1 2222 1 11 1 22222 333 11 666666666666 1111 1111 444444444444 111 111 11 111111 222222222222222222222222222222222222222222222222 111 1 1 4444444444444444444444 1 1 2222222 11 22222 1111 1 1 555555555555555555555555555 333333333333 222222 11111 1 11 1 1 1 11 111 22 22 7777777777777777 22222 1 1 7777777777777777777 222222 1 444444444444 1 1 22222 222 2222 1 2222 2222 1 33333 11 2222222 1 222 1 111 11 1 11 1 1 444444444 1111 1 9999999999999999999999999 222 1 11 11 1 1 2222 55555555555555 11 2222222 88888888888888888888888 11 333333333 11 111 111 111 11 111 2222222 2222222 1
lowQualScore : 1111 77 33 1 1111111111111111111111 3 6 44 5555555555555 88 7 88 7 3 555555555555555555555555555 7 44 000 0 0 8 33 0 222 33 00 66 0 2 2 3 111111111111111111111111 0 3 111111111 0 777 8 44 3 44444444444444444444444444 2 1111 999 3 3 8 5 22222222222222 0 0 2 55555 3 4444 2 8 999999999999999999 3 8 8 7777 444 0 33 5 4444 777 5555555555 0 33333 55 1111 3 2 33 8 777 3 3 0 0 0 3 222222222222222222222222222222 5555555555 3 0 33 0 2 2 4444444444444 0 0 1 0 3 333333333 0 33 0 0000 0 5 77 0 5 5 5 11111 5 333 8 2 2 11 333333333333 0 8 8 8 8 8 7777 8 7777 0 8 0 666666666666 666 0 5 6 444 3 11 88 777777 0 3 888888888888888888888888888888888888888888888888 0 555 0 0 9999999999999999999999 0 0 3 8888888 3 1 00 55555 8888 8 9 0 0 2 2 1 1 999999999999999999999999999 3 3 111111111111 444444 99999 0 3 66 22 2 0 0 0 33 88 777 33 3 3 33 1 0000000000000000 55555 6 2 0 0 7777777777777777777 2 888888 9 0 6 333333333333 0 0 3 33333 333 7 8888 3 3333 8888 6 3 33333 33 6 3333333 3 555 3 1 7 7 999 33 0 3 99 22 0 0 333333333 2222 3 0 3 8888888888888888888888888 7 7 7 333 7 3 88 1 66 5 1 22 1 7 0 3 0 2 3 1111 11111111111111 33 4444444 2 2 00000000000000000000000 6 9 00 1 0 999999999 33 3 000 99 6 6 8 444 444 33 0 111 9999999 1 1111111 0 6 6 5 66
lowQualScore : .... .. .. . ...................... . . .. ............. .. . .. . . ........................... . .. ... . . . .. . ... .. .. .. . . . . ........................ . . ......... . ... . .. . .......................... . .... ... . . . . .............. . . . ..... . .... . . .................. . . . .... ... . .. . .... ... .......... . ..... .. .... . . .. . ... . . . . . . .............................. .......... . . .. . . . ............. . . . . . ......... . .. . .... . . .. . . . . ..... . ... . . . .. ............ . . . . . . .... . .... . . . ............ ... . . . ... . .. .. ...... . . ................................................ . ... . . ...................... . . . ....... . . .. ..... .... . . . . . . . . ........................... . . ............ ...... ..... . . .. .. . . . . .. .. ... .. . . .. . ................ ..... . . . . ................... . ...... . . . ............ . . . ..... ... . .... . .... .... . . ..... .. . ....... . ... . . . . ... .. . . .. .. . . ......... .... . . . ......................... . . . ... . . .. . .. . . .. . . . . . . . .... .............. .. ....... . . ....................... . . .. . . ......... .. . ... .. . . . ... ... .. . ... ....... . ....... . . . . ..
lowQualScore : 2222 22 22 0 8888888888888888888888 3 7 77 3333333333333 33 3 33 3 7 333333333333333333333333333 3 00 888 0 0 8 88 0 888 88 22 55 0 8 5 5 888888888888888888888888 0 2 000000000 2 555 8 00 2 88888888888888888888888888 5 2222 222 2 0 8 0 55555555555555 0 0 5 88888 2 0000 5 0 000000000000000000 8 0 0 0000 000 0 88 0 5555 555 8888888888 0 88888 88 2222 2 5 22 8 555 2 2 0 0 0 2 000000000000000000000000000000 8888888888 2 0 88 0 5 5 8888888888888 0 0 0 0 2 555555555 0 88 0 0000 0 8 55 0 2 8 8 00000 8 222 0 8 2 22 222222222222 8 0 0 0 0 0 0000 0 0000 8 0 8 666666666666 666 8 6 4 000 2 00 88 555555 2 2 888888888888888888888888888888888888888888888888 2 000 0 0 2222222222222222222222 0 0 2 2222222 2 2 22 00000 5555 8 2 0 0 5 5 0 0 000000000000000000000000000 2 2 888888888888 888888 22222 0 2 55 22 5 0 0 0 55 88 555 88 2 2 88 0 2222222222222222 00000 5 5 0 0 5555555555555555555 5 888888 2 0 5 888888888888 0 0 2 88888 333 3 3333 3 3333 7777 7 3 33333 00 7 7777777 3 777 3 0 3 3 000 88 0 2 55 55 0 0 555555555 5555 2 0 2 3333333333333333333333333 3 3 3 333 3 3 00 0 55 0 0 00 0 3 7 2 0 5 2 2222 88888888888888 88 2222222 5 5 00000000000000000000000 5 2 88 0 2 555555555 88 2 222 22 7 7 0 888 000 22 8 444 4444444 0 0000000 0 7 7 7 66
consensus : AGAAAGGG----GGGGGGGGGTCGAAACNC------CAAACATNTC-CCAT-ATGG-CCTCCGGATGTGAATTAGAAGATATATAAAATTAAATTGAT-A-ATAGTT--CAAAACTA--TTTTATTTGCGTAAATACGTATA--TA--ATT-TGCATATACGTCTAT--TAAAGGAATTGTCATGTAAGAAATACATTATCTTTTCTTTAAAAAAAA-AATAA-TGGG-TGTACAT--AA-ATATC--ATATA--CA-CTCTGTATACG-TCG-CGACATCGGAAAATA--CG--ACATCGTAT-------AGATT-TTTTGCTGTT--GAAT---TGTGAC---TGTGTCAAAATAAT--GT------T-------CTA-----TAAGACTT----ATCACA--TTTCAAATCTTATCACTTCTTAT--T---AT-----AAGTTTCA-TTCTCAATCCT-ATTGTCATA-AN--CTTTTCAAG-AT-CGGT-TT------------------TTTTTGG-TTGTT-TTTTTGTT----TTTC--AC-AT--TACATCC--GA---ATGAAA-TCT------TCA-TGATCTTTT-CT--ACTTT----ATCCAAACGTAGCAT-TACTTAGTA---GTATGTGTGCCT-TT-GCTG-AACACGCC--------------A-----AC--------GCACTTTNAAA------AAAAAATGAAGAAAAGT-GTAT--ATA-TACACATAAATCCAGTGGCGTGNT--GGGCT----AAA-AA-GTNA-GGGGGCAC----AAG--CTATC-ATAAA--CTTGG-TTAAAAGGGGGGGNG--CA-CAAACTTTAAAAA-AAAATTGGCAAAGCAATA---A-AAAGAT--AGAAAATAAGA-GATGGGCATAGACCTAACACAG-CGATTCCTT---AC---TGTATCA-AATAC-GG-TGAC-CAT-CC----TA-TAT----TTC-AAA-GATC--C----GCCGAT--AGTCCAGAGACTCTTT---AGTTCAAAGGTCCG--ATAGTTCGA-AT---AG-CGCCATTGAC----G----AGAACAAGCTGTAA----AA---------AT-AAA---AATTCTTAAAACTTTATTTG-ACATTTCA-CGTCATT--GG--AGTGACTTG--TTAGATAA-TAA-TTGAATTC--T-T-CAAATGAAATATGATTAT-CAA-----AATT-A--TTACCTTGTCAG-ATG-CGTGGATCAGNCAGNATAT---AC--------GATG----CGTCATCATAAAT-GAGC-T-AA-CCTAACTCGGT----ACAAAAAT-AAT-ATA-TGGATTCGGAGAAATATGTTATGGTACAT-GCAA-GAAAT-AATGTTTTTGAG-CAGC---TGAGAA--CTGCATATTAGAATTG--GTATTTTTTTNAC------T------C-CTCAT-----CTGATCATTCT-ATGT-AAAGAA-------------------AAAGTGGGGAGGGGG------CAACAA-ACGCCACTTATGC---C--AAA-C-AT-TT-GTGC----CCCCCCCTTCC---AAAAAT----GAGGGAC-GTGCCCC--TCTG--GCACCCGCTCCC-CTTTTT-----GTCGNGCGCCCGTGTTACGCC-TAAGTAT-AGTTT--AATGTACAAA-TGTGNCATGTACACAATTGATATTC--GTTT--AAGTTAGAT-TTAAAACAATG-CAATTTAA-TCCA-AATGCA----TAAATAATNCAAACGAAATGCTG-AATAGTTA----------------TAT--G---GGCTGCTCTACAATCACTAAAT---ACAATTAC-ACAATTATACTTTTAATCGTANCTCCGTTAAANTTGAATCATCTACAATTGNTTANNANTTTCTGAGAGTCGATTAAAGTTTTAAATAAAA-CTCCAAACATACGGCGAAA----ATAA-AT-----------ACC--CTTCTT----TTGACGTGACGTCGCA--------------CA-A---GTAACGTCAAAATG-AANCAACG--------ATT--ATCTTAAACTATAC--TATGTTTAC--AT-ATGT-ATTATA-CATACGT-TAAT---GCTTCCTTACGAACATAC-GATAATCATTTTATGA-GAAANATAC----ACCCTATGAAAGAA-TTTTGA-GGAATATCATTTAA-TTTGAACGCGGGGCCGAAATTGGACCCAAACG
Reference ( family-613 ) : AGAAAGGG----GGGGGGGGGTCGAAACNC------CAAACATNTC-CCATAATGG-CCTCCGGATGTGAATTAGAAGATATATAAAATTAAATTGAT-A-ATAGTT--CAAAACTA--TTTTATTTGCGTAAATACGTATA--TA--ATT-TGCATATACGTCTAT--TAAAGGAATTGTCATGTAAGAAATACATTATCTTTTCTTTAAAAAAAA-AATAA-TGGG-TGTACAT--AA-ATATC--ATATA--CA-CTCTGTATACG-TCG-CGACATCGGAAAATA--CG--ACATCGTAT-------AGATT-TTTTGCTGTT--GAAT---TGTGAC---TGTGTNAAAATAAT--GT------T-------CTA-----TAAGACTT----ATCACA--TTTCAAATCTTATCACTTCTTAT--T---AT-----AAGTTTCA-TTCTCAATCCT-ATTGTCATA-AN--CTTTTCAAG-AT-CGGT-TT------------------TTTTTGG-TTGTT-TTTTTGTT----TTTC--AC-AT--TACATCC--GA---ATGAAA-TCT------TCA-TGATCTTTT-CT--ACTTT----ATCCAAACGTAGCAT-TACTTAGTA---GTATGTGTGCCT-TT-GCTG-AACACGCC--------------A-----AC--------GCACTTTNAAA------AAAAAATGAAGAAAAGT-GTAT--ATA-TACACATAAATCCAGTGGCGTGNT--GGGCT----AAA-AA-GTNA-GGGGGCAC----AAG--CTATC-ATAAA--CTTGG-TTAAAAGGGGGGGNG--CA-CAAACTTTAAAAA-AAAATTGGCAAAGCAATA---A-AAAGAT--AGAAAATAAGA-GATGGGCATAGACCTAACACAG-CGATTCCTT---AC---TGTATCA-AATAC-GG-TGAC-CAT-CC----TA-TAT----TTC-AAA-GATC--C----GCCGAT--AGTCCAGAGACTCTTT---AGTTCAAAGGTCCG--ATAGTTCGA-AT---AG-CGCCATTGAC---------AGAACAAGCTGTAA---GAA---------ATAAAA---AATTCTTAAAACTTTATTTG-ACATTTCA-CGTCATT--GG--AGTGACTTG--TTAGATAA-TAA-TTGAATTC--T-T-CAAATGAAATATGATTAT-CAA-----AATT-A--TTACCTTGTCAG-ATG-CGTGGATCAGNCAGNATAT---AC--------GATG----CGTCATCATAAAT-GAGC-T-AA-CCTAACTCGGT----ACAAAAAT-AAT-ATA-TGGATTCGGAGAAATATGTTATGGTACAT-GCAA-GAAAT-AATGTTTTTGAG-CAGC---TGAGAA--CTGCATATTAGAATTG--GTATTTTTTTNAC------T------C-CTCAT-----CTGATCATTCT-ATGT-AAAGAA-------------------AAAGTGGGGAGGGGG------CAACAA-ACGCCACTTATGC---C--AAAAC-AT-TT-GTGC----CCCCCCCTTCC---AAAAAT----GAGGGAC-GTGCCCC--TCTG--GCACCCGCTCCC-CTTTTT-----GTCGNGCGCCCGTGTTACGCC-TAAGTAT-AGTTT--AATGTACAAA-TGTGNCATGTACACAATTGATATTC--GTTT--AAGTTAGAT-TTAAAACAATG-CAATTTAA-TCCA-AATGCA----TAAATAATNCAAACGAAATGCTG-AATAGTTA----------------TAT--G---GGCTGCTCTACAATCACTAAAT---ACAATTAC-ACAATTATACTTTTAATCGTANCTCCGTTAAANTTGAATCATCTACAATTGNTTANNANTTTCTGAGAGTCGATTAAAGTTTTAAATAAAA-CTCCAAACATACGGCGAAA----ATAA-AT-----------ACC--CTTCTT----TTGACGTGACGTCGCA--------------CA-A---GTAACGTCAAAATG-AANCAACG--------ATT--ATCTTAAACTATAC--TATGTTTAC--AT-ATGT-ATTATA-CATACGT-TAAT---GCTTCCTTACGAACATAC-GATAATCATTTTATGA-GAAANATAC----ACCCTATGAAAGAA-TTTTGA-GGAATATCATTTAA-TTTGAACGCGGGGCCGAAATTGGACCCAAACG
gi|1 : ----GGGGGGGGATC----CTC------C-----TCTCGCCATAATGGGCCTC--GATGTGAAT-AGAAGATACATCAAATTAAATT------ATAGTT--CAAAACTA--TTTT---------------------TA--ATT-TGCATATACGTCTATATTATAAGAATTGTCA-GTAAGAATCTCATTATCTTTTCTTTTAAAAAAA-AATAAGTGGGGTGTACAT--AAGATATCTCATATATTCA-CTCTTTATAC--TCG-CAATAGTGCATAATAATTGTTACATTGTACGTTCCGGAAATGGTTTTGCTGTTAAGAACATATGTGAC---TGTGTAAAAATAATTTGT------TACATGTACTAGTACATAAGACTTTTATATCAAACTTTTCCAATCTTGTCA-TTCTTATATT---ATCCCTCAGGTTTCAATTCTCAATTCT-ATTGT-ATA-AGGACTT----------CGGT-TT------------------TTTG-GG-CTGTT-TTTTTTTT----TTAA--AC-AT--TA-ATTCTGGA---ATGAAAATCTGTAATTTCAGTGATCTTTTTCTTAACTTTTTTTATCCAAACGTAGCAT-TACTTAGTA---G---G-GTGCTT-TG-GCTACAGCACGCCTATAGTAAGTAATTA-----ACT-------GCACTTTGAAAGAAAAAAAAAAATGAAGAAAGGT-TTATTAATT-TACACATAAATCCA-TG-CTTGGTTGGGGCT----AAA-AAAGTGA-GGGGGC-C----AAGTCCTATC-ATAAATTCTTGG-TTAAAAAGGAGGGAG--CAGCAAAATT----AA-AAAATTGGCA--GCAATA---A-AA-GATTCAGAAAATAGTA-GA-GGGCATAGACCTTAAACAGGCGATTCCTTCAAAC---TGTATCA-AACAC-GGGTGACGCAT-CCAATATAATAT----TTC-AAA-GATT--CCGGCGCCGATTAGGTCC-GAGACTTTTTTTAGGTTCAAAGGTCCG--ATAGTTCGA--T---AG-CGCCAT------------------AAGCTGTAA------------------AAA---AATTCTTAAA-CTTTATTTG-ACATTTCA-CGTT-TTGAGG--CGTGAC--G--TTAGATAATTAA-TTG-ATTCA-TGT-CAAATGAAAAATGATTATCCAA-----AATTCA--TTACATTGTCCGAATT-CGTGGATCAGCAAGTAT-T---AA--------GATGGCATCGTAATCATAAAT-GAGC-TAAA-GCTAACTCATC----ACACAATTAAAT-ATA-TGGATTCGGAGAGA-ATGTTAT--TA-AT-GAAA-GAAAT-AG---TTTTGAG-CAGCTGATGAGAA--C-GCA-ATTAAAATGA--GTATTTTTTTTAA------CGTGGTAT-CTCAT-----CTGAT-ATT-T-ATGT-AAAGAA-------------------AAAGT-GAAAGGGGG------C-ACAA-CCGTCACTTATGCCCAC--AAACT-AT-TT-GTG-----CCCCCCCTTCCAAAAAAAATAGAAGAGGGACGGTGCCCC--TCT-------CCGCTCCCACTTTTT-----GTCCTACGCCTGTGT-------TAAGTAT-AGTT----ATGTACAAAGTGGGCCATGTACACAA-TGATATTC--ATTT--AAGTTAGATCTTAAAA----G--AATTTAA-TCCA-AAT-------TAAATAAGCTAAACGAAATGCTGAAATAGTTA----------------TATGGG---GGCTGCTC-AC-ATCAT---AT---ACAATTACAACAATTAT
gi|10 : ggaatctttaaaaaataaaacgttatgggttaaccctcgggttttagccgttatatttgggcagcaagatgattttattttattcatttatctcaaggatgactttatctaaacgcatctaccactacttataaaaggggacgatgatgggcatcggcatgttaaaatgatggtaaatctaccgggcatttcaaaatatgtggggctcaagttccttggctgcatgtatacatgtgcctggtaaaaatttttgttttgcagtgaatttcttatagcatgtttctaatgtattagattatggtcctacgggttatttaaactaaaaaagtagtacaatgtataggcccataaccaagctataacgctattgttactattttctttcaataaatctgaacactgtgcataatgttaagtagagagcattgatttttcatacatacgttgcttttgcacaaaccacgaactcgtgcgatctgtaagggggggggggggtgtttcgcaattaccaaaatccttggctttgtgcgctaaggagattatactgatttaatgaagcagtctttgaaatattggacatacgattgttatatcttccattttcaaattacagtatgcataattatatgtgattataattgcaaatgctttcttcatactcaatatattcacatcatagcaacaagctgctgaaaatgcatcaatatgtcatacaaagtttactgtttaaaactatcatattttgccgttcatacgtggaaactaaccccggaaacgaatattagacagtaaaatagtaagatttattcttccaccgattgtccagctttgactaaaaatttaggatagagcgtttacaagagatacATTTTCTGAG-GTCAATTAAAGTTTTAAATAAAA-CTCCAAACATATGGCAAAA----ATAA--T-----------ACC--CTTCTT----TTGGC-TGACGTCGCAAATGTTGGACGTAGCA-AATAGTAAC-TCCAAATG-GATCAAGG--------ATT--ATCTTAAACTATAC--TATGTTTAC--AT-ATGT-ATTATA-TATACG--TAAT---GCTT-CTTA-GAACAT-T-GATAATCATTTTA--ATGAAAGATAC----A-CCTAT--AAGAA-TTTTGA-GG-ATATTATTTAA-TTTGAACGCGGGGCCG-AATTGGACCCAAAcacgcttacgcaggtct
gi|11 : aAAAA-TATAA-TGGG-TGTAAAG--AT-ATATT--ATATA--CAACTCTGTATACA-TCGGCGATAT-----AATA--CG--ACATCGGA--------AAATT-TTTTGCTGTT---AGT---TGTGACCAGTTTGT-AAAATAAT--GTGTTACAT-------GTA-----TAAGA-TT----ATCAC---TTTCAAATCTTAT-ACTTCTTCT--TTATAT-----AAGTTTCA-TTCTCAATCCT-ATTGTCATA-AC--TTTTTCAAGTAT-CGGT-TTTTGGTTGTTGTTGTGTTTTTTTTGG-TTTTTGTTTTTGTT----Tgaaaccg
gi|12 : CAGTGGCGTGCT--GGGCTC---AAATAA-GTTAGGGGCACATAATTAAG--ACATT-NNNNN--NNNNN-NNNNNNNNNNNNNNN--NN-NNNNNNNNNNNNN-NNNNNNNNNNNNNNNNNN---N-NNNNNN--NNNNNNNNNNN-NNNNNNNNNNNNNNNNNNNCGG---ATTCCT----------AT-TCAGAATGC-GG-TGAC-CAT-CC----GA-TAT----T-C-A--------------------------CAG-GACTCTTT---AGTTCAAAGATCCA--ATAGTTCGA-AT---gtgttt
gi|14 : GTGCATTGCAAAGAAATTGATATCTTTGAC-TTGC---TGAGAA--CTACATATTAGAATTGA-GTATTTTTTTTACCA----T------CGTTTATTCTAACTGATTCTTCT-ATGTAAAAGAAATTTGTGTTTTTAAAAAACAAAGTGGGGGGGGGGGGTTTACAAGAA-ACACAACTTGTCC---C------C-ATCCT-G-GC----CCCCCgcttgataattaaga
gi|16 : ttgtC--TGTGTTCGTCAAT-TTGA-ATTATT-CATATGT--AAC---GCGTC-TTACGAATATGC-GATATTCATTT-ATGA--ATACATATGATTACTCTATGAAATAA-TTTTGA-AGAATATCATTTAC-TTTGGACGAGTGACC--AATT
gi|19 : TTA--AAGTTAGAT-T-AGAGCAATG-CAATATCA-TCCA-AATGCA------AATACTGCAAACGAAATGCTG-AATAAT
gi|2 : AGAAAGGGAGGAGGGGGGGGG--GGAACTCAGTGTATAATCCTAT--CCAT-ATGG-CCTCCGGATGTGAATT-GAAGATATATAAAG--AAATTAATAA-AAAGTTCACAAAACTAATTTCTATTTGTGTAAATACGTATAACTAGTATTATATATATACATCTAT--TAAAGGAATTGTCATGTAAGTAATAC-TTATCTTTTCTTTAAAAAAAATAATAA-TGGG-TGTA-ATTCAA-TTAT----TTTA--CA-TTCTGTATATGTTTA-CGGCATGGGAAAA-------------ATAT-------AGATT-TTT----------AA------TGAC---T-TACC-ACAT------T------T-------C--------AAATCTT----ATCAC---T------TCCTATGA----TAAT--T---AT-----AAGTTTCA-TCCTCAATCCT-ATTGTCATA-AA--CTTTTCAAG-AT-C-GT-GT------------------TTTCCGG-TTGTT-TTTTTATG----TTTC--ACTAT--TACATGT--GA---ATGAAA---T------TCA-TGATCTTTTGTT--ACTTT----ATCCAAACGTAGCATATACTTAGTACGTGTATGTGTGTCTGTTAGCTG-AACACGCC--------------A-----AC--------GCACATTT---------AAAAAATGAAGAAAAGT-GTAT--ATA-TACACGTAATTCCAGTGGCGTGTT--GGGCTAAAAAAA-AA-GTCA-GGGGACAC----AAA--CTATCAATAAA--CCTGGATTAAAAGGGGGGGGGGACA-CAAACTTT-AAAA-AAAATT-GCAAAGCAATAAGCA-AAAGATAGAGAAAATAAGA-GATGGACATAGACCTAACACAA-CGATTCC------------TATCA-AATAC-GG-TGAC-CAT-CC----TA-TAT----TTC-AAA-GATCCTC----GCCGAT--ATTCCAGATACTTTTT---ACTTCAAAGGTCCG--ATAGTTCGA-AT---AGACGCCATTGATGTCGG----AGAA-AAGCTGT-------A---------AT---------TTTTTAAAACTTTATTTG-ACATTTAA-CG----------------CT----TTAGATAA-TAA-TTGAAATCCAT-T-CAAATGAAATATGATAAT-AAAAAAAGAATA-A--TTACCTTGTCAG-ATG-CGTGGATAAAGCAGGATA----AC--------GATG----CATCATCATAAATAGAGCAT-AACCCTAACTCGGT----ACAAAAAT-ATC-ACA-TGAA-TCGGAGAAATATGTTATAATACAT-GCAA-GAAAT-AATGTTTTTGA--CAAC---TGAGAAC-CTGCATATTAGAATTG--GTATCCTTTTGAT------T------C-CTCAT-----CTGACCATTCT-ATGT-AAAAGA-------------------AAAATGGGGAGGGGG------CCACAA-AC-CCACTTATGC---CAAAAAACGAT-TT-GTGCCCGTCCCCCCCTTCC---AAAAAT----GAGAGAC-GTGCCCCCGTCTGAAACACCCGCCCCC-CCGTTT-----GTCGA-CGCCCGTGTTACATC-TGAGTATAAGTTT--AATGTAGAAA-TGTGTCATGTACACAATTGATATTCCAGTTTTAAAGTTAGAT-TTAAAACAATGCCAATTTAA-TCCA-AATGTAATGCTGAATAGTTCAATCGAAGTAC----AT-GTAA----------------TAT--G---GGCTGCTCTGCAATCACTAAAT---ACAATTAC-ACAATTAT--TTTTAATCGTAGCTCTGTTAAAA-TGAATCATCTACAATTGATTACAAATTTCTAAGAGTCGATTAAAGTCT--AATAAAACCTCCAAACATTCGGCGAAA----ATAA-AT-----------ACC--CTTCTT----TT-ACGTGACGTCACA--------------CAGA---GTAACGTCAAAATGCAAACAACG---------TT--ATCTTAAACTATAC--TATATTTAC--AT-ATGT-ATTATA-CATACGT-TAAT---GCTTCCTTACGAAAATAT-GATAATCATTTTATAACAAAACATAC----ACCTTAT-AAGGAATTTTTGA-GGAATATCATTTAA-TTTGAATGCGGGGCCAAAATTGGACCCAAACG
gi|20 : A-TTATGAAGGAATATCGTTTAA-TTTGAATGCGGCGCCGAAATTGGCCCCAAGCGa
gi|21 : -TTTGAACGCGGGGCCGAAATTGGACCCAAAcacaaagtcctt
gi|3 : T-TT------------------TTTTTGG-TTTTT-GTTTTGTT----TTTTTAAC-AT--TA-ATC---GA---ATGAAA-T-T------TCA-TGATCTTTT--T--A-TTT----ATCAAAGTGCA--AT-TACTTA--A---GTATGTGTGCTT-TT-GCTG-AAC-CGCT--------------ATAGATACAGTAATAAGCACTTCGAAA------AAAAAATGAAGAAAAGTTGTAT--TTAATACACATAAACCCAGTGGCGTG--------------AA-AA-GTGA-GGGGGCAC----AA---CTATC-ATAAAG-TTTGG-TTAAAAGGGGGAGC---CA-CA--CTTTAAAAACAAAATTGGCAAAGCA-TA---ATAAAGA---AGAAAATAAGAAGATGGGCATAGAC-TAACACAG-TGTTTTTTT---ACATATGTATCA-AATACTGG-TGAC-CAC-TC----TA-TATATATTTC-AAACGATCG-C----GCCGAT--AGTC-AGATACT-TCT---AGTTCAAAG-TCGA--ATAGTTGAA-AT---A--------TGA----------AGAACAAGCTGTAA---TAA---------A--AAA---AATTCTTAA--CTTTATTTGGACATTTCA-CGTCATT--GG--AGTGACTT-----AGATAA-TAA-TGAAATTC--T-T--AAATGAA-TATGATTAT-CAA-----AATT-G--TTAC-TTGTC-G-ATGGCGTGGATCAGTCAGGATAT---ATAAGGGGGGGGGG----CG--ATTA-AAAT--AGC-T-AA-CCTAACTCG-T----GCAAAAAT-AATCATA-TGGATTCGAGGCAAT-TGTTATGGTACAT-GCAA-GAAAT-AATGTTTTTGAGACAGC---TGAGAAACCTGCATATTAAAATTGCAATATTTTTTTAACGTGGTAT------C-CTCAT-----CTGATCATTCTCATGT-AAAGAA-------------------AAAGTGGGGAGGGGG------CAGCAAGACGCCATTAATGC---C--AA--C-AT-TTTGTGC----CCCCCCCTTCC---AAAA-T----GAGGGAC-GTGCC----TCTG--GCACC---TCCC-TTTTTTTGGGGGGGGGGGGTCC---CTACGCCGTAAGTAT-AGTTTTAAATGTACAAA-TGTGACATGT-CACAATTGATATTC--ATTT--AAGTTAGAT-TTAAA-CAATG-CAATTTAAATTCAGAATG------TAAATAAC---AACGAAATGCTG-AATAGTTAAATTGAAGTAATAATATAT--ATTTGGCTGCTCTACAATCACTAAATTAGACAAT-AT-ACAATTATACTTTTAATCGTACCTCCATTAAACTTGAAT-ATCTACAATTGCTTAACACTTTCTGAGAGATAATTAAAGTTTTAAATAAAA-AT-CAAACATACGGCG-AA----ATAAGAT-----------ACC--CTTCTT----T--ACGTGA-GTCGCA--------------CA-A---G-AACGTC-AAATG-CACCAACG--------ATT--ATCTT-AACTATAC--TATGTTTAC---T-ATGTAATTATA-CATACGTAAAAT---GCTT-CTTACTGACATATGGATAATGATTTTTTAT-GAAAACTA-------CCTATGAAGGAA-TTTTGA-GGAATATCATTTAATTTTGAAAGCGGGGC--GAATTGGACCCaggaccaagt
gi|4 : ttAGAAAGGG----GGGGGGGGTCCGAAACGC------CAAACACCTT-ACATccagacaggagcctttaag
gi|5 : ggacacctttaaaacctttaaagtaatgagttcccctagattattttacgtatataatatttgtagcgagatgaattttaatttattttattcacatttattcaagggctcagttcgtcgtttcaaacttatatttctacatagtacacagcacctaccactaccataacaaggggaaggagtgatcgcataaataaaaattatggtaaatctacgacattctcaaataatgtggggccaagttccctagctgttgctacaatgtacacagtaatatatatgtgcctgtaaaagtttttgttttgcagaattactttacatgttttaatgtattagattatggtcctatatttaaaagtacattaaaacaactaccgaacactattggttactattttcttcattaaaatcgtggaacacgtgcatgttcaagtagagcatgatatgttcattcaatttagtagcgtgtgcataaaccaccaacccgtgcggatctAGAAAGGG----GGGGGGGGGTCGAAACAC------CAAACATATC-C--TTATGG-CCTCCGGATGTGAATTAGAAGATATATAAAATT-----GAT-ATATAGTT--CAAA-CTA--TTTTATTTGCGTAAATACGTATA--TA--------------------T--TAAAGGAATTGTCATGTAAGAAATA-ATTATCTTTTCTTTAAGAAAAA-A-TAA-TGGG-TGTACAT--AA-ATAT---ATACA--CA-ATCTGTTTATG-TTA-CGACATCGGAAAATA--C------CTGTAT-------AGATT-TTTTGCTGTT--G--T---TATGAC---TGTGTCAAAATAAT--GT------T-------CTA-----TAAGACTT----ACCACA--TTTCAAATCTTATCACTTCCTA---T---AT-----CAGATCCA-TTTCCAATCCTGATTGTCCTATAC--CTTTTCAAG-ATCCGGTCTT------------------TTTTTGGTTTGCA-TTTTTGTTTATCTTTC--AC-ATTCTACATCT--GATCCATGGAATTTT------TCA-TGATCTTTT--T--AC-TT----ATCC-AACGTAGCAT----TTATTA---GTATGTGTGCCT-TT-GCTG-AACACGCC--------------A-----AC--------GCACTTTT-TA------AAAAAATGAAG-AAAGT-GTAT--ATA-TACACATtgttgcgctttgacaaatccagggagattatagtgttataatgaagccatctttgaaatattggaattacgattgttcgatatcttcttccattttcaaattacataattacggtgattataatacaatgctttctttaatactcaatttttactttacaatagatagtgttcaaagtaattatgaatatgtcacgtgatctttactttttttatacaacaagatgctggaaaatacatcaattgttatataaaaagtcttactgtttaaactatctttatttcgccggtcaatggaaaactggtcgaaaacgaatatagaagtttatttccacgatactctttctgactaaagacatttagaaag
gi|6 : ccaccaactcgtgtgggtctTTAAGTAAAA-CTCAAAACATATGTCAAAATAAGATGA-ATTTTAATTTTTAATCGTCTTCTTCATGTTGATGTGACGTTGCA--------------TA-------AACATCAAAATG-ACACAATGTTAATATAATTTAGTTTAAAACTATATAGTGTATTTAC--ATCATAT-ATTA
gi|6 : aaaaaatatagtgcacgcttgACTATA---TA-GTGTAC--AT-GTAT--TTACATCATATAT-TAGTAAAGCCTCTTT-CGAACATAC-GATTATCATTTTCTGA--AAAGATAC----ACCCAGTGAAAGAA-TTTTGA-GAAGCATCATCGAA-TTTAGACGCTGGGCCGAATTTGGCCCCGAACGgtaaagcctctnactatatagtgtacatgtatttacatcatatattagtaaagcctctttcgaacatacgattatcattttctgaaaagatacacccagtgaaagaattttgagaagcatcatcgaatttagacgctgggccgaatttggccccgaacgtaccaagtcct
gi|9 : aaaaaatatagtgcacgcttgttaagtaaaactcaaaacatatgtcaaaataagatgaattttaatttttaatcgtcttcttcatgttgatgtgacgttgcataaacatcaaaatgacacaatgttaatataatttagtttaaaactatatagtgtatttacatcatatattagtaaagcctctnGG-GGTGGGGATACGCCAAACACAA-CGATTCCT------------ATCA-AATAC-GA-TGAC-CATTCC----TA-TAT----TTCCAAA-GG---------GTCGA---AGTCCAGCGACTCTCT---AGTTCAAAGGTCCGCCATAGTTCGACATTTCAG-CGTCATTGACCAGTGACTTAGATTAAACTGTAAATTGAATTCTTTCCTATGAAATATAATCATTAAAA-TTAATTTtaccaagtcct
gi|9 : TTCG-ACATTTCAGCGTCATT--GACCAGTGACTTAGATTAAACTG-TAAATTGAATTC--T-TTCCTATGAAATATAATCAT-TAA-----AATT-AATTTACCTTGTCAG-ATG-CGT-----AAGCGATATATGTAAC--------GATG-------CATCATA-----------------AACTCGGTCAAAAGAAAAAT--GT-ATAGTAGATTCGGAGAAATATGTaccttgtcagatgcgtaagcgatatatgtaacgatgcatcataaactcggtcaaaagaaaaatgtatagtagattcggagaaatatgtg
6 sequences could not be aligned to this reference sequence:
Unaligned ( gi|7 ): ATGGTACATCTACCGTGGCTTCTCAATAATGTAGTGCTCGAAGTTCGCCTGTGTTGCTAACACAAGTATACAATGTGCTGTAAAAGTTTTTGTTTTGCAGAATTAATTTACACGTTTTAATGTATTAGATTATGTTCCTACGTGTATTTAAAAACTAAAAGTACATGTATGAAAGTATAAGCTATTTGCTAACTGATTTTCTTCAATAAATCGTGGAACACGTGCATACATGTATCAAGTAGAGGCAATGATTTTCATACATACGGAGGCCTTTTTGCCAACCACCACTCGCTCGTGGCGTATCTAGAAGGGGGGGGGGG
Unaligned ( gi|8 ): AAAATCATAAAACAAACACATTGTCGAAAGAAAGTAGGGGTAACGTCCCCCTGTTGCTACGTGCCTATAGAACAATTCTTGTTTGTACAGTCACCTTACATGTGTTAATTAATACTTCATGTGTACTGGAACGTGTTCTATTTCATTGTCCTATCAAGAAATACATGTAGCCATTATTTACTATTTTCATCCACAAATGCTCATGAAGTAAAGCACGACTTTCACACATGGAAGTCATTTACGCACGGCCCACCCACCGTCCACTTATAGCATTAGTGGCATGTGCACAAATCACGTACGGATCTAAAAGGGGG
Unaligned ( gi|13 ): GGGCTCAATTCTTCGCTTTAAGTTTGCATTCTACAATCATTCACTACTACCTTAAAAAATAATAAACTGAACTTCGCATGTAAAATAATGAAGCAACCACATTGTTAAAAGAATGTGGGGCCCAAGTTTCCCTGTTGCTACGTGCCTATAGAACAATTCTTTGATTTGATTGTACAATCACCTTAATGCGTTAA
Unaligned ( gi|15 ): GTTTATACAACAAGCTGCTAGAAAATGCATGAATTGTCATATAGAGTTTTATTATTTAAAAAACTATCACATTTCGCCGGTCATTGGAAACTGGTCGAAAATGAATACTAGACAGGTAAATTGATGATTATTTCCACGATGATTCTTTGACTAAATTGGACATTTAGCAAGATA
Unaligned ( gi|17 ): GGTAAATCTACGACATTCTCAAAATAATGTGCGGCCAAGTTCCCTAGCTGTTGCTACATGTACAATATATATATGTGTCTGTAAA
Unaligned ( gi|18 ): ACAATTGTTTGATATATCCTTCTTCCATTTTCAATTTACATAATTATCAGTGATTAATTTAATCATTTTCTTCATACTCAATT
Alignments
lowQualScore : 111111111111111111111111111111
lowQualScore : 2222 222222 1111 1 1 11 333333333333 1 11 11 444444444444444444444444444 11 111 1 1 11 1 333 11 11 11 1 1 777777777777777777777777 1 555555555 111 11 77777777777777777777777777 2222 222 1 33333333333333 1 1 11111 1111 555555555555555555 1111 111 1 11 1 2222 111 5555555555 1 44444 2222 11 111 1 1 1 000000000000000000000000000000 4444444444 1 11 1 3333333333333 1 1 1 222222222 1 22 1 2222 1 11 1 22222 333 11 666666666666 3333 444444444444 111 111 11 111111 8888888888888888888 4444 1 1 6666666666666666666666 1 1 2222222 11 22222 1111 1 1 555555555555555555555555555 333333333333 2222 11111 1 11 1 1 1 11 111 22 22 7777777777777777 22222 1 1 7777777777777777777 222222 1 4444444444444444 22222 3333 2222 1 11 33333333 1 33333 11 2222222 1 222 1 111 11 1 11 1 1 444444444 1111 1 88888888888888888888888888 222 1 11 11 1 1 2222 55555555555555 11 2222222 88888888888888888888888 11 333333333 11 111 111 111 11 111 2222222 2222222 1
lowQualScore : 1111 77 33 1 888888 333 3 1 6666 3 3 6 44 222222222222 3 88 7 88 7 3 555555555555555555555555555 7 44 000 0 0 8 33 0 222 33 00 66 0 2 2 3 111111111111111111111111 0 3 111111111 0 777 8 22 3 44444444444444444444444444 2 1111 999 3 3 8 5 22222222222222 0 0 2 55555 3 4444 2 8 999999999999999999 3 8 8 7777 444 0 33 5 4444 777 5555555555 0 33333 55 1111 3 2 33 8 777 3 3 0 0 0 3 222222222222222222222222222222 5555555555 3 0 33 0 2 2 4444444444444 0 0 1 0 3 333333333 0 33 0 0000 0 5 77 0 5 5 5 11111 5 333 8 2 2 11 333333333333 0 8 8 8 8 8 4444 8 0 8 0 666666666666 666 5 0 5 6 444 11 88 777777 0 3 5555555555555555555 333 5555 7 7 0 0 1111111111111111111111 0 0 3 8888888 3 1 00 55555 8888 2 9 0 0 2 2 1 1 999999999999999999999999999 3 3 111111111111 6 1111 99999 0 3 66 22 2 0 0 0 33 88 777 33 3 3 33 1 0000000000000000 55555 6 2 0 0 7777777777777777777 2 888888 9 0 6 6666666666666666 3 33333 0000 8888 3 6 88 11111111 3 33333 33 6 3333333 3 555 3 1 7 7 999 33 0 66 2 22 0 0 333333333 2222 3 0 3 99999999999999999999999999 7 7 7 333 7 3 88 1 66 5 1 22 1 7 0 3 0 2 3 1111 11111111111111 33 4444444 2 2 00000000000000000000000 6 9 00 1 0 999999999 33 3 000 99 6 6 8 444 444 33 0 111 9999999 1 1111111 0 6 6 5 66
lowQualScore : .... .. .. . ...... ... . . .... . . . .. ............ . .. . .. . . ........................... . .. ... . . . .. . ... .. .. .. . . . . ........................ . . ......... . ... . .. . .......................... . .... ... . . . . .............. . . . ..... . .... . . .................. . . . .... ... . .. . .... ... .......... . ..... .. .... . . .. . ... . . . . . . .............................. .......... . . .. . . . ............. . . . . . ......... . .. . .... . . .. . . . . ..... . ... . . . .. ............ . . . . . . .... . . . . ............ ... . . . . ... .. .. ...... . . ................... ... .... . . . . ...................... . . . ....... . . .. ..... .... . . . . . . . . ........................... . . ............ . .... ..... . . .. .. . . . . .. .. ... .. . . .. . ................ ..... . . . . ................... . ...... . . . ................ . ..... .... .... . . .. ........ . ..... .. . ....... . ... . . . . ... .. . .. . .. . . ......... .... . . . .......................... . . . ... . . .. . .. . . .. . . . . . . . .... .............. .. ....... . . ....................... . . .. . . ......... .. . ... .. . . . ... ... .. . ... ....... . ....... . . . . ..
lowQualScore : 2222 22 22 0 888888 888 0 0 0000 3 3 7 77 000000000000 3 33 3 33 3 7 333333333333333333333333333 3 00 888 0 0 8 88 0 888 88 22 55 0 8 5 5 888888888888888888888888 0 2 000000000 2 555 8 00 2 88888888888888888888888888 5 2222 222 2 0 8 0 55555555555555 0 0 5 88888 2 0000 5 0 000000000000000000 8 0 0 0000 000 0 88 0 5555 555 8888888888 0 88888 88 2222 2 5 22 8 555 2 2 0 0 0 2 000000000000000000000000000000 8888888888 2 0 88 0 5 5 8888888888888 0 0 0 0 2 555555555 0 88 0 0000 0 8 55 0 2 8 8 00000 8 222 0 8 2 22 222222222222 8 0 0 0 0 0 0000 0 8 0 8 666666666666 666 0 8 6 4 000 00 88 555555 2 2 0000000000000000000 888 3333 3 3 0 0 2222222222222222222222 0 0 2 2222222 2 2 22 00000 5555 5 2 0 0 5 5 0 0 000000000000000000000000000 2 2 888888888888 5 2222 22222 0 2 55 22 5 0 0 0 55 88 555 88 2 2 88 0 2222222222222222 00000 5 5 0 0 5555555555555555555 5 888888 2 0 5 5555555555555555 2 88888 7777 3333 3 7 33 00000000 3 33333 00 7 7777777 3 777 3 0 3 3 000 88 0 55 5 55 0 0 555555555 5555 2 0 2 33333333333333333333333333 3 3 3 333 3 3 00 0 55 0 0 00 0 3 7 2 0 5 2 2222 88888888888888 88 2222222 5 5 00000000000000000000000 5 2 88 0 2 555555555 88 2 222 22 7 7 0 888 000 22 8 444 4444444 0 0000000 0 7 7 7 66
consensus : AGAAAGGG----GGGGGGGGGTCGAAACNC------CAAACATNTC-CCATA-TGG-CCTCCGGATGTGAATTAGAAGATATATAAAATTAAATTGATA-ATA-GTTCA--AAACTA--TTTTATTTGCGTAAATACGTATA--TA--ATT-TGCATATACGTCTAT--TAAAGGAATTGTCATGTAAGAAATACATTATCTTTTCTTTAAAAAAAA-AATAA-TGGG-TGTACAT--AA-ATATC--ATATA--CA-CTCTGTATACG-TCG-CGACATCGGAAAATA--CG--ACATCGTAT-------AGATT-TTTTGCTGTT--GAAT---TGTGAC---TGTGTCAAAATAAT--GT------T-------CTA-----TAAGACTT----ATCACA--TTTCAAATCTTATCACTTCTTAT--T---AT-----AAGTTTCA-TTCTCAATCCT-ATTGTCATA-AN--CTTTTCAAG-AT-CGGT-TT------------------TTTTTGG-TTGTT-TTTTTGTT----TTTC--AC-AT--TACATCC--GA---ATGAAA-TCT------TCA-TGATCTTTT-CT--ACTTT----ATCCAAACGTAGCAT-TACTTAGTA---GTATGTGTGCCT-TT-GCTG-AACACGCC--------------A-----AC--------GCACTTTNAAA------AAAAAATGAAGAAAAGT-GTAT--ATA-TACACATAAATCCAGTGGCGTGNT--GGGCT----AAA-AA-GTNA-GGGGGCAC----AAG--CTATC-ATAAA--CTTGG-TTAAAAGGGGGGGNG--CA-CAAACTTTAAAAA-AAAATTGGCAAAGCAATA---A-AAAGAT--AGAAAATAAG-AGATGGGCATAGACCTAACACAG-CGATTCCTT---AC---TGTATCA-AATAC-GG-TGAC-CAT-CC-ATATA-TATTTC-AAA-GATC--C----GCCGAT--AGTCCAGAGACTCTTT---AGTTCAAAGGTCCG--ATAGTTCGA-AT---AG-CGCCATTGAC-----AG-AAC-------AAGCTGTAAAAA----AATTCTTAAAACTTTATTT-GACATTTCA-CGTCATT--GG--AGTGACT-G--TTAGATAA-TAA-TTGAATTC--T-T-CAAATGAAATATGATTAT-CAA-----AATT-A--TTACCTTGTCAG-AT-GCGTGGATCAGNCAGNATAT---AC--------GATG----CGTCATCATAAAT-GAGC-T-AA-CCTAACTCGGT----ACAAAAAT-AAT-ATA-TGGATTCGGAGAAATATGTTATGGTACAT-GCAA-GAAAT-AATGTTTTTGAG-CAGC---TGAGAA--CTGCATATTAGAATTG--GTATTTTTTTNAC------T------C-CTCAT-----CTGATCATTCT-ATGT-AAAGAA-------------------AAAGTGGGGAGGGGG------CAACAA-ACGCCACTTATGC---C---AAAC-A-T-TTGTGC----CCCCCCCTTCC---AAAAAT----GAGGGAC-GTGCCCC--TCTG--GCACCCGCTCCC-CTTTTT-----GTCGNGCGCCCGTGTTACGCC-TAAGTAT-AGTTT--AATGTACAAA-TGTGNCATGTACACAATTGATATTC--GTTT--AAGTTAGAT-TTAAAACAATG-CAATTT-AATCCA-AATGCA----TAAATAATNCAAACGAAATGCTG-AATAGTT--------------ATAT--G-----GGCTGCTCTACAATCACTAAAT---ACAATTAC-ACAATTATACTTTTAATCGTANCTCCGTTAAANTTGAATCATCTACAATTGNTTANNANTTTCTGAGAGTCGATTAAAGTTTTAAATAAAA-CTCCAAACATACGGCGAAA----ATAA-AT-----------ACC--CTTCTT----TTGACGTGACGTCGCA--------------CA-A---GTAACGTCAAAATG-AANCAACG--------ATT--ATCTTAAACTATAC--TATGTTTAC--AT-ATGT-ATTATA-CATACGT-TAAT---GCTTCCTTACGAACATAC-GATAATCATTTTATGA-GAAANATAC----ACCCTATGAAAGAA-TTTTGA-GGAATATCATTTAA-TTTGAACGCGGGGCCGAAATTGGACCCAAACG
Reference ( family-613 ) : AGAAAGGG----GGGGGGGGGTCGAAACNC------CAAACATNTC-CCATA-TGG-CCTCCGGATGTGAATTAGAAGATATATAAAATTAAATTGATA-ATA-GTTCA--AAACTA--TTTTATTTGCGTAAATACGTATA--TA--ATT-TGCATATACGTCTAT--TAAAGGAATTGTCATGTAAGAAATACATTATCTTTTCTTTAAAAAAAA-AATAA-TGGG-TGTACAT--AA-ATATC--ATATA--CA-CTCTGTATACG-TCG-CGACATCGGAAAATA--CG--ACATCGTAT-------AGATT-TTTTGCTGTT--GAAT---TGTGAC---TGTGTCAAAATAAT--GT------T-------CTA-----TAAGACTT----ATCACA--TTTCAAATCTTATCACTTCTTAT--T---AT-----AAGTTTCA-TTCTCAATCCT-ATTGTCATA-AN--CTTTTCAAG-AT-CGGT-TT------------------TTTTTGG-TTGTT-TTTTTGTT----TTTC--AC-AT--TACATCC--GA---ATGAAA-TCT------TCA-TGATCTTTT-CT--ACTTT----ATCCAAACGTAGCAT-TACTTAGTA---GTATGTGTGCCT-TT-GCTG-AACACGCC--------------A-----AC--------GCACTTTNAAA------AAAAAATGAAGAAAAGT-GTAT--ATA-TACACATAAATCCAGTGGCGTGNT--GGGCT----AAA-AA-GTNA-GGGGGCAC----AAG--CTATC-ATAAA--CTTGG-TTAAAAGGGGGGGNG--CA-CAAACTTTAAAAA-AAAATTGGCAAAGCAATA---A-AAAGAT--AGAAAATAAG-AGATGGGCATAGACCTAACACAG-CGATTCCTT---AC---TGTATCA-AATAC-GG-TGAC-CAT-CC----TA-TATTTC-AAA-GATC--C----GCCGAT--AGTCCAGAGACTCTTT---AGTTCAAAGGTCCG--ATAGTTCGA-AT---AG-CGCCATTGAC----GAG-AAC-------AAGCTGTAAAAATAAAAATTCTTAAAACTTTATTT-GACATTTCA-CGTCATT--GG--AGTGACTTG--TTAGATAA-TAA-TTGAATTC--T-T-CAAATGAAATATGATTAT-CAA-----AATT-A--TTACCTTGTCAG-AT-GCGTGGATCAGNCAGNATAT---AC--------GATG----CGTCATCATAAAT-GAGC-T-AA-CCTAACTCGGT----ACAAAAAT-AAT-ATA-TGGATTCGGAGAAATATGTTATGGTACAT-GCAA-GAAAT-AATGTTTTTGAG-CAGC---TGAGAA--CTGCATATTAGAATTG--GTATTTTTTTNAC------T------C-CTCAT-----CTGATCATTCT-ATGT-AAAGAA-------------------AAAGTGGGGAGGGGG------CAACAA-ACGCCACTTATGC---C---AAAC-A-T-TTGTGC----CCCCCCCTTCC---AAAAAT----GAGGGAC-GTGCCCC--TCTG--GCACCCGCTCCC-CTTTTT-----GTCGNGCGCCCGTGTTACGCC-TAAGTAT-AGTTT--AATGTACAAA-TGTGNCATGTACACAATTGATATTC--GTTT--AAGTTAGAT-TTAAAACAATG-CAATTT-AATCCA-AATGCA----TAAATAATNCAAACGAAATGCTG-AATAGTT--------------ATAT--G-----GGCTGCTCTACAATCACTAAAT---ACAATTAC-ACAATTATACTTTTAATCGTANCTCCGTTAAANTTGAATCATCTACAATTGNTTANNANTTTCTGAGAGTCGATTAAAGTTTTAAATAAAA-CTCCAAACATACGGCGAAA----ATAA-AT-----------ACC--CTTCTT----TTGACGTGACGTCGCA--------------CA-A---GTAACGTCAAAATG-AANCAACG--------ATT--ATCTTAAACTATAC--TATGTTTAC--AT-ATGT-ATTATA-CATACGT-TAAT---GCTTCCTTACGAACATAC-GATAATCATTTTATGA-GAAANATAC----ACCCTATGAAAGAA-TTTTGA-GGAATATCATTTAA-TTTGAACGCGGGGCCGAAATTGGACCCAAACG
gi|1 : ----GGGGGGGGATC----CTC------C-----TCTCGCCATAATGGGCCTC--GATGTGAAT-AGAAGATACATCAAATTAAATT-----ATA-GTTCA--AAACTA--TTTT---------------------TA--ATT-TGCATATACGTCTATATTATAAGAATTGTCA-GTAAGAATCTCATTATCTTTTCTTTTAAAAAAA-AATAAGTGGGGTGTACAT--AAGATATCTCATATATTCA-CTCTTTATAC--TCG-CAATAGTGCATAATAATTGTTACATTGTACGTTCCGGAAATGGTTTTGCTGTTAAGAACATATGTGAC---TGTGTAAAAATAATTTGT------TACATGTACTAGTACATAAGACTTTTATATCAAACTTTTCCAATCTTGTCA-TTCTTATATT---ATCCCTCAGGTTTCAATTCTCAATTCT-ATTGT-ATA-AGGACTT----------CGGT-TT------------------TTTG-GG-CTGTT-TTTTTTTT----TTAA--AC-AT--TA-ATTCTGGA---ATGAAAATCTGTAATTTCAGTGATCTTTTTCTTAACTTTTTTTATCCAAACGTAGCAT-TACTTAGTA---G---G-GTGCTT-TG-GCTACAGCACGCCTATAGTAAGTAATTA-----ACT-------GCACTTTGAAAGAAAAAAAAAAATGAAGAAAGGT-TTATTAATT-TACACATAAATCCA-TG-CTTGGTTGGGGCT----AAA-AAAGTGA-GGGGGC-C----AAGTCCTATC-ATAAATTCTTGG-TTAAAAAGGAGGGAG--CAGCAAAATT----AA-AAAATTGGCA--GCAATA---A-AA-GATTCAGAAAATAGT-AGA-GGGCATAGACCTTAAACAGGCGATTCCTTCAAAC---TGTATCA-AACAC-GGGTGACGCAT-CCAATATAATATTTC-AAA-GATT--CCGGCGCCGATTAGGTCC-GAGACTTTTTTTAGGTTCAAAGGTCCG--ATAGTTCGA--T---AG-CGCCAT----------------------AAGCTGTAAAAA----AATTCTTAAA-CTTTATTT-GACATTTCA-CGTT-TTGAGG--CGTGAC--G--TTAGATAATTAA-TTG-ATTCA-TGT-CAAATGAAAAATGATTATCCAA-----AATTCA--TTACATTGTCCGAAT-TCGTGGATCAGCAAGTAT-T---AA--------GATGGCATCGTAATCATAAAT-GAGC-TAAA-GCTAACTCATC----ACACAATTAAAT-ATA-TGGATTCGGAGAGA-ATGTTAT--TA-AT-GAAA-GAAAT-AG---TTTTGAG-CAGCTGATGAGAA--C-GCA-ATTAAAATGA--GTATTTTTTTTAA------CGTGGTAT-CTCAT-----CTGAT-ATT-T-ATGT-AAAGAA-------------------AAAGT-GAAAGGGGG------C-ACAA-CCGTCACTTATGCCCAC---AAACTA-T-TTGTG-----CCCCCCCTTCCAAAAAAAATAGAAGAGGGACGGTGCCCC--TCT-------CCGCTCCCACTTTTT-----GTCCTACGCCTGTGT-------TAAGTAT-AGTT----ATGTACAAAGTGGGCCATGTACACAA-TGATATTC--ATTT--AAGTTAGATCTTAAAA----G--AATTT-AATCCA-AAT-------TAAATAAGCTAAACGAAATGCTGAAATAGTT--------------ATATGGG-----GGCTGCTC-AC-ATCAT---AT---ACAATTACAACAATTAT
gi|10 : ggaatctttaaaaaataaaacgttatgggttaaccctcgggttttagccgttatatttgggcagcaagatgattttattttattcatttatctcaaggatgactttatctaaacgcatctaccactacttataaaaggggacgatgatgggcatcggcatgttaaaatgatggtaaatctaccgggcatttcaaaatatgtggggctcaagttccttggctgcatgtatacatgtgcctggtaaaaatttttgttttgcagtgaatttcttatagcatgtttctaatgtattagattatggtcctacgggttatttaaactaaaaaagtagtacaatgtataggcccataaccaagctataacgctattgttactattttctttcaataaatctgaacactgtgcataatgttaagtagagagcattgatttttcatacatacgttgcttttgcacaaaccacgaactcgtgcgatctgtaagggggggggggggtgtttcgcaattaccaaaatccttggctttgtgcgctaaggagattatactgatttaatgaagcagtctttgaaatattggacatacgattgttatatcttccattttcaaattacagtatgcataattatatgtgattataattgcaaatgctttcttcatactcaatatattcacatcatagcaacaagctgctgaaaatgcatcaatatgtcatacaaagtttactgtttaaaactatcatattttgccgttcatacgtggaaactaaccccggaaacgaatattagacagtaaaatagtaagatttattcttccaccgattgtccagctttgactaaaaatttaggatagagcgtttacaagagatacATTTTCTGAG-GTCAATTAAAGTTTTAAATAAAA-CTCCAAACATATGGCAAAA----ATAA--T-----------ACC--CTTCTT----TTGGC-TGACGTCGCAAATGTTGGACGTAGCA-AATAGTAAC-TCCAAATG-GATCAAGG--------ATT--ATCTTAAACTATAC--TATGTTTAC--AT-ATGT-ATTATA-TATACG--TAAT---GCTT-CTTA-GAACAT-T-GATAATCATTTTA--ATGAAAGATAC----A-CCTAT--AAGAA-TTTTGA-GG-ATATTATTTAA-TTTGAACGCGGGGCCG-AATTGGACCCAAAcacgcttacgcaggtct
gi|11 : aAAAA-TATAA-TGGG-TGTAAAG--AT-ATATT--ATATA--CAACTCTGTATACA-TCGGCGATAT-----AATA--CG--ACATCGGA--------AAATT-TTTTGCTGTT---AGT---TGTGACCAGTTTGT-AAAATAAT--GTGTTACAT-------GTA-----TAAGA-TT----ATCAC---TTTCAAATCTTAT-ACTTCTTCT--TTATAT-----AAGTTTCA-TTCTCAATCCT-ATTGTCATA-AC--TTTTTCAAGTAT-CGGT-TTTTGGTTGTTGTTGTGTTTTTTTTGG-TTTTTGTTTTTGTT----Tgaaaccg
gi|12 : CAGTGGCGTGCT--GGGCTC---AAATAA-GTTAGGGGCACATAATTAAG--ACATT-NNNNN--NNNNN-NNNNNNNNNNNNNNN--NN-NNNNNNNNNNNNN-NNNNNNNNNNNNNNNNNN---N-NNNNNN--NNNNNNNNNN-NNNNNNNNNNNNNNNNNNNNCGG---ATTCCT----------AT-TCAGAATGC-GG-TGAC-CAT-CC----GA-TATT-C-A--------------------------CAG-GACTCTTT---AGTTCAAAGATCCA--ATAGTTCGA-AT---gtgttt
gi|14 : GTGCATTGCAAAGAAATTGATATCTTTGAC-TTGC---TGAGAA--CTACATATTAGAATTGA-GTATTTTTTTTACCA----T------CGTTTATTCTAACTGATTCTTCT-ATGTAAAAGAAATTTGTGTTTTTAAAAAACAAAGTGGGGGGGGGGGGTTTACAAGAA-ACACAACTTGTCC---C------C-A-TCCTG-GC----CCCCCgcttgataattaaga
gi|16 : ttgtC--TGTGTTCGTCAAT-TTGA-ATTATT-CATATGT--AAC---GCGTC-TTACGAATATGC-GATATTCATTT-ATGA--ATACATATGATTACTCTATGAAATAA-TTTTGA-AGAATATCATTTAC-TTTGGACGAGTGACC--AATT
gi|19 : TTA--AAGTTAGAT-T-AGAGCAATG-CAATAT-CATCCA-AATGCA------AATACTGCAAACGAAATGCTG-AATAAT
gi|2 : AGAAAGGGAGGAGGGGGGGGG--GGAACTCAGTGTATAATCCTATC-C-ATA-TGG-CCTCCGGATGTGAATT-GAAGATATATAAAG--AAATTAATA-AAAAGTTCACAAAACTAATTTCTATTTGTGTAAATACGTATAACTAGTATTATATATATACATCTAT--TAAAGGAATTGTCATGTAAGTAATAC-TTATCTTTTCTTTAAAAAAAATAATAA-TGGG-TGTA-ATTCAA-TTAT----TTTA--CA-TTCTGTATATGTTTA-CGGCATGGGAAAA-------------ATAT-------AGATT-TTT----------AA------TGAC---T-TACC-ACAT------T------T-------C--------AAATCTT----ATCAC---T------TCCTATGA----TAAT--T---AT-----AAGTTTCA-TCCTCAATCCT-ATTGTCATA-AA--CTTTTCAAG-AT-C-GT-GT------------------TTTCCGG-TTGTT-TTTTTATG----TTTC--ACTAT--TACATGT--GA---ATGAAA---T------TCA-TGATCTTTTGTT--ACTTT----ATCCAAACGTAGCATATACTTAGTACGTGTATGTGTGTCTGTTAGCTG-AACACGCC--------------A-----AC--------GCACATTT---------AAAAAATGAAGAAAAGT-GTAT--ATA-TACACGTAATTCCAGTGGCGTGTT--GGGCTAAAAAAA-AA-GTCA-GGGGACAC----AAA--CTATCAATAAA--CCTGGATTAAAAGGGGGGGGGGACA-CAAACTTT-AAAA-AAAATT-GCAAAGCAATAAGCA-AAAGATAGAGAAAATAAG-AGATGGACATAGACCTAACACAA-CGATTCC------------TATCA-AATAC-GG-TGAC-CAT-CC----TA-TATTTC-AAA-GATCCTC----GCCGAT--ATTCCAGATACTTTTT---ACTTCAAAGGTCCG--ATAGTTCGA-AT---AGACGCCATTGATGTCGGAG-AA--------AAGCTGT---AAT-----TTTTTAAAACTTTATTT-GACATTTAA-CG----------------CT----TTAGATAA-TAA-TTGAAATCCAT-T-CAAATGAAATATGATAAT-AAAAAAAGAATA-A--TTACCTTGTCAG-AT-GCGTGGATAAAGCAGGATA----AC--------GATG----CATCATCATAAATAGAGCAT-AACCCTAACTCGGT----ACAAAAAT-ATC-ACA-TGAA-TCGGAGAAATATGTTATAATACAT-GCAA-GAAAT-AATGTTTTTGA--CAAC---TGAGAAC-CTGCATATTAGAATTG--GTATCCTTTTGAT------T------C-CTCAT-----CTGACCATTCT-ATGT-AAAAGA-------------------AAAATGGGGAGGGGG------CCACAA-AC-CCACTTATGC---CAAAAAACGA-T-TTGTGCCCGTCCCCCCCTTCC---AAAAAT----GAGAGAC-GTGCCCCCGTCTGAAACACCCGCCCCC-CCGTTT-----GTCGA-CGCCCGTGTTACATC-TGAGTATAAGTTT--AATGTAGAAA-TGTGTCATGTACACAATTGATATTCCAGTTTTAAAGTTAGAT-TTAAAACAATGCCAATTT-AATCCA-AATGTAATGCTGAATAGTTCAATCGAAGTAC----AT-GTA--------------ATAT--G-----GGCTGCTCTGCAATCACTAAAT---ACAATTAC-ACAATTAT--TTTTAATCGTAGCTCTGTTAAAA-TGAATCATCTACAATTGATTACAAATTTCTAAGAGTCGATTAAAGTCT--AATAAAACCTCCAAACATTCGGCGAAA----ATAA-AT-----------ACC--CTTCTT----TT-ACGTGACGTCACA--------------CAGA---GTAACGTCAAAATGCAAACAACG---------TT--ATCTTAAACTATAC--TATATTTAC--AT-ATGT-ATTATA-CATACGT-TAAT---GCTTCCTTACGAAAATAT-GATAATCATTTTATAACAAAACATAC----ACCTTAT-AAGGAATTTTTGA-GGAATATCATTTAA-TTTGAATGCGGGGCCAAAATTGGACCCAAACG
gi|20 : A-TTATGAAGGAATATCGTTTAA-TTTGAATGCGGCGCCGAAATTGGCCCCAAGCGa
gi|21 : -TTTGAACGCGGGGCCGAAATTGGACCCAAAcacaaagtcctt
gi|3 : T-TT------------------TTTTTGG-TTTTT-GTTTTGTT----TTTTTAAC-AT--TA-ATC---GA---ATGAAA-T-T------TCA-TGATCTTTT--T--A-TTT----ATCAAAGTGCA--AT-TACTTA--A---GTATGTGTGCTT-TT-GCTG-AAC-CGCT--------------ATAGATACAGTAATAAGCACTTCGAAA------AAAAAATGAAGAAAAGTTGTAT--TTAATACACATAAACCCAGTGGCGTG--------------AA-AA-GTGA-GGGGGCAC----AA---CTATC-ATAAAG-TTTGG-TTAAAAGGGGGAGC---CA-CA--CTTTAAAAACAAAATTGGCAAAGC-ATA---ATAAAGA---AGAAAATAAGAAGATGGGCATAGA-CTAACACAG-TGTTTTTTT---ACATATGTATCA-AATACTGG-TGAC-CAC-TCTATATA-TATTTC-AAACGATCG-C----GCCGAT--AGT-CAGATACT-TCT---AGTTCAAA-GTCGA--ATAGTTGAA-AT---A--------TGA------AG-AAC-------AAGCTGTAATAAAAAAAATTCTT--AACTTTATTTGGACATTTCA-CGTCATT--GG--AGTGAC-----TTAGATAA-TAA-TGAAATTC--T-T--AAATG-AATATGATTAT-CAA-----AATT-G--TTA-CTTGTC-G-ATGGCGTGGATCAGTCAGGATAT---ATAAGGGGGGGGGG----CG--ATTA-AAAT--AGC-T-AA-CCTAACTC-GT----GCAAAAAT-AATCATA-TGGATTCGAGGCAAT-TGTTATGGTACAT-GCAA-GAAAT-AATGTTTTTGAGACAGC---TGAGAAACCTGCATATTAAAATTGCAATATTTTTTTAACGTGGTAT------C-CTCAT-----CTGATCATTCTCATGT-AAAGAA-------------------AAAGTGGGGAGGGGG------CAGCAAGACGCCATTAATGC---C----AAC-ATT-TTGTGC----CCCCCCCTTCC----AAAAT----GAGGGAC-GTG--CC--TCTG--GCAC---CTCCC-TTTTTTTGGGGGGGGGGGGTCC---CTACGCCGTAAGTAT-AGTTTTAAATGTACAAA-TGTGACATGT-CACAATTGATATTC--ATTT--AAGTTAGAT-TT-AAACAATG-CAATTTAAATTCAGAATG------TAAATAAC---AACGAAATGCTG-AATAGTTAAATTGAAGTAATAATAT--ATATTTGGCTGCTCTACAATCACTAAATTAGACAA-TAT-ACAATTATACTTTTAATCGTACCTCCATTAAACTTGAAT-ATCTACAATTGCTTAACACTTTCTGAGAGATAATTAAAGTTTTAAATAAAA-AT-CAAACATACGGCG-AA----ATAAGAT-----------ACC--CTTCTT----T--ACGTGA-GTCGCA--------------CA-A---G-AACGTC-AAATG-CACCAACG--------ATT--ATCTT-AACTATAC--TATGTTTAC---T-ATGTAATTATA-CATACGTAAAAT---GCTT-CTTACTGACATATGGATAATGATTTTTTAT-GAAAACTA-------CCTATGAAGGAA-TTTTGA-GGAATATCATTTAATTTTGAAAGCGGGGC--GAATTGGACCCaggaccaagt
gi|4 : ttAGAAAGGG----GGGGGGGGTCCGAAACGC------CAAACACCTT-ACATccagacaggagcctttaag
gi|5 : ggacacctttaaaacctttaaagtaatgagttcccctagattattttacgtatataatatttgtagcgagatgaattttaatttattttattcacatttattcaagggctcagttcgtcgtttcaaacttatatttctacatagtacacagcacctaccactaccataacaaggggaaggagtgatcgcataaataaaaattatggtaaatctacgacattctcaaataatgtggggccaagttccctagctgttgctacaatgtacacagtaatatatatgtgcctgtaaaagtttttgttttgcagaattactttacatgttttaatgtattagattatggtcctatatttaaaagtacattaaaacaactaccgaacactattggttactattttcttcattaaaatcgtggaacacgtgcatgttcaagtagagcatgatatgttcattcaatttagtagcgtgtgcataaaccaccaacccgtgcggatctAGAAAGGG----GGGGGGGGGTCGAAACAC------CAAACATATC-CT-TA-TGG-CCTCCGGATGTGAATTAGAAGATATATAAAATT-----GATATATA-GTTCA--AA-CTA--TTTTATTTGCGTAAATACGTATA--TA--------------------T--TAAAGGAATTGTCATGTAAGAAATA-ATTATCTTTTCTTTAAGAAAAA-A-TAA-TGGG-TGTACAT--AA-ATAT---ATACA--CA-ATCTGTTTATG-TTA-CGACATCGGAAAATA--C------CTGTAT-------AGATT-TTTTGCTGTT--G--T---TATGAC---TGTGTCAAAATAAT--GT------T-------CTA-----TAAGACTT----ACCACA--TTTCAAATCTTATCACTTCCTA---T---AT-----CAGATCCA-TTTCCAATCCTGATTGTCCTATAC--CTTTTCAAG-ATCCGGTCTT------------------TTTTTGGTTTGCA-TTTTTGTTTATCTTTC--AC-ATTCTACATCT--GATCCATGGAATTTT------TCA-TGATCTTTT--T--AC-TT----ATCC-AACGTAGCAT----TTATTA---GTATGTGTGCCT-TT-GCTG-AACACGCC--------------A-----AC--------GCACTTTT-TA------AAAAAATGAAG-AAAGT-GTAT--ATA-TACACATtgttgcgctttgacaaatccagggagattatagtgttataatgaagccatctttgaaatattggaattacgattgttcgatatcttcttccattttcaaattacataattacggtgattataatacaatgctttctttaatactcaatttttactttacaatagatagtgttcaaagtaattatgaatatgtcacgtgatctttactttttttatacaacaagatgctggaaaatacatcaattgttatataaaaagtcttactgtttaaactatctttatttcgccggtcaatggaaaactggtcgaaaacgaatatagaagtttatttccacgatactctttctgactaaagacatttagaaag
gi|6 : ccaccaactcgtgtgggtctTTAAGTAAAA-CTCAAAACATATGTCAAAATAAGATGA-ATTTTAATTTTTAATCGTCTTCTTCATGTTGATGTGACGTTGCA--------------TA-------AACATCAAAATG-ACACAATGTTAATATAATTTAGTTTAAAACTATATAGTGTATTTAC--ATCATAT-ATTA
gi|6 : aaaaaatatagtgcacgcttgACTATA---TA-GTGTAC--AT-GTAT--TTACATCATATAT-TAGTAAAGCCTCTTT-CGAACATAC-GATTATCATTTTCTGA--AAAGATAC----ACCCAGTGAAAGAA-TTTTGA-GAAGCATCATCGAA-TTTAGACGCTGGGCCGAATTTGGCCCCGAACGgtaaagcctctnactatatagtgtacatgtatttacatcatatattagtaaagcctctttcgaacatacgattatcattttctgaaaagatacacccagtgaaagaattttgagaagcatcatcgaatttagacgctgggccgaatttggccccgaacgtaccaagtcct
gi|9 : aaaaaatatagtgcacgcttgttaagtaaaactcaaaacatatgtcaaaataagatgaattttaatttttaatcgtcttcttcatgttgatgtgacgttgcataaacatcaaaatgacacaatgttaatataatttagtttaaaactatatagtgtatttacatcatatattagtaaagcctctnG-GGGTGGGGATACGCCAAACACAA-CGATTCCT------------ATCA-AATAC-GA-TGAC-CATTCC----TA-TATTTCCAAA-GG---------GTCGA---AGTCCAGCGACTCTCT---AGTTCAAAGGTCCGCCATAGTTCGACATTTCAG-CGTCATTGAC----CAGTGACTTAGATTAAACTGTAAAtaccaagtcct
gi|9 : TTC-GACATTTCAGCGTCATT--GACCAGTGACTTAGATTAAACTG-TAAATTGAATTC--T-TTCCTATGAAATATAATCAT-TAA-----AATT-AATTTACCTTGTCAG-AT-GCGT-----AAGCGATATATGTAAC--------GATG-------CATCATA-----------------AACTCGGTCAAAAGAAAAAT--GT-ATAGTAGATTCGGAGAAATATGTttgaattctttcctatgaaatataatcattaaaattaatttaccttgtcagatgcgtaagcgatatatgtaacgatgcatcataaactcggtcaaaagaaaaatgtatagtagattcggagaaatatgtg
6 sequences could not be aligned to this reference sequence:
Unaligned ( gi|7 ): ATGGTACATCTACCGTGGCTTCTCAATAATGTAGTGCTCGAAGTTCGCCTGTGTTGCTAACACAAGTATACAATGTGCTGTAAAAGTTTTTGTTTTGCAGAATTAATTTACACGTTTTAATGTATTAGATTATGTTCCTACGTGTATTTAAAAACTAAAAGTACATGTATGAAAGTATAAGCTATTTGCTAACTGATTTTCTTCAATAAATCGTGGAACACGTGCATACATGTATCAAGTAGAGGCAATGATTTTCATACATACGGAGGCCTTTTTGCCAACCACCACTCGCTCGTGGCGTATCTAGAAGGGGGGGGGGG
Unaligned ( gi|8 ): AAAATCATAAAACAAACACATTGTCGAAAGAAAGTAGGGGTAACGTCCCCCTGTTGCTACGTGCCTATAGAACAATTCTTGTTTGTACAGTCACCTTACATGTGTTAATTAATACTTCATGTGTACTGGAACGTGTTCTATTTCATTGTCCTATCAAGAAATACATGTAGCCATTATTTACTATTTTCATCCACAAATGCTCATGAAGTAAAGCACGACTTTCACACATGGAAGTCATTTACGCACGGCCCACCCACCGTCCACTTATAGCATTAGTGGCATGTGCACAAATCACGTACGGATCTAAAAGGGGG
Unaligned ( gi|13 ): GGGCTCAATTCTTCGCTTTAAGTTTGCATTCTACAATCATTCACTACTACCTTAAAAAATAATAAACTGAACTTCGCATGTAAAATAATGAAGCAACCACATTGTTAAAAGAATGTGGGGCCCAAGTTTCCCTGTTGCTACGTGCCTATAGAACAATTCTTTGATTTGATTGTACAATCACCTTAATGCGTTAA
Unaligned ( gi|15 ): GTTTATACAACAAGCTGCTAGAAAATGCATGAATTGTCATATAGAGTTTTATTATTTAAAAAACTATCACATTTCGCCGGTCATTGGAAACTGGTCGAAAATGAATACTAGACAGGTAAATTGATGATTATTTCCACGATGATTCTTTGACTAAATTGGACATTTAGCAAGATA
Unaligned ( gi|17 ): GGTAAATCTACGACATTCTCAAAATAATGTGCGGCCAAGTTCCCTAGCTGTTGCTACATGTACAATATATATATGTGTCTGTAAA
Unaligned ( gi|18 ): ACAATTGTTTGATATATCCTTCTTCCATTTTCAATTTACATAATTATCAGTGATTAATTTAATCATTTTCTTCATACTCAATT
Alignments
lowQualScore : 111111111111111111111111111111
lowQualScore : 2222 22222222222222222 1 1 11 4444444444444 11 11 444444444444444444444444444 11 111 1 1 11 1 333 11 11 11 1 1 777777777777777777777777 1 555555555 111 11 77777777777777777777777777 2222 222 1 33333333333333 1 1 11111 1111 555555555555555555 1111 111 1 11 1 2222 111 5555555555 1 44444 2222 11 111 1 1 1 000000000000000000000000000000 4444444444 1 11 1 3333333333333 1 1 1 222222222 1 22 1 2222 1 11 1 22222 333 11 666666666666 2222 444444444444 111 111 11 111111 888888888888888 333333333 22 1 1 44444444444444444444 11 222222 2222222 11 22222 1111 1 1 555555555555555555555555555 333333333333 222222 11111 1 11 1 1 1 11 111 22 22 7777777777777777 22222 1 1 7777777777777777777 222222 1 444444444444 1 1 22222 222 2222 1 2222 2222 1 33333 11 2222222 1 222 1 111 11 1 11 1 1 444444444 1111 1 9999999999999999999999999 222 1 11 11 1 1 2222 55555555555555 11 2222222 88888888888888888888888 11 333333333 11 111 111 111 11 111 2222222 2222222 1
lowQualScore : 1111 77 33 1 99999999999999999 3 3 3 6 44 5555555555555 88 7 88 7 3 555555555555555555555555555 7 44 000 0 0 8 33 0 222 33 00 66 0 2 2 3 111111111111111111111111 0 3 111111111 0 777 8 22 3 44444444444444444444444444 2 1111 999 3 3 8 5 22222222222222 0 0 2 55555 3 4444 2 8 999999999999999999 3 8 8 7777 444 0 33 5 4444 777 5555555555 0 33333 55 1111 3 2 33 8 777 3 3 0 0 0 3 222222222222222222222222222222 5555555555 3 0 33 0 2 2 4444444444444 0 0 1 0 3 333333333 0 33 0 0000 0 5 77 0 5 5 5 11111 5 333 8 2 2 11 333333333333 0 8 8 8 8 8 2222 8 0 3 0 666666666666 666 0 5 6 444 3 11 88 777777 0 3 444444444444444 222222222 22 0 0 44444444444444444444 33 666666 3 8888888 3 1 00 55555 8888 8 9 0 0 2 2 1 1 999999999999999999999999999 3 3 111111111111 444444 99999 0 3 66 22 2 0 0 0 33 88 777 33 3 3 33 1 0000000000000000 55555 6 2 0 0 7777777777777777777 2 888888 9 0 6 444444444444 0 0 3 33333 333 7 8888 3 3333 8888 6 3 33333 33 6 3333333 3 555 3 1 7 7 999 33 0 3 99 22 0 0 333333333 2222 3 0 3 8888888888888888888888888 7 7 7 333 7 3 88 1 66 5 1 22 1 7 0 3 0 2 3 1111 11111111111111 33 4444444 2 2 00000000000000000000000 6 9 00 1 0 999999999 33 3 000 99 6 6 8 444 444 33 0 111 9999999 1 1111111 0 6 6 5 66
lowQualScore : .... .. .. . ................. . . . . .. ............. .. . .. . . ........................... . .. ... . . . .. . ... .. .. .. . . . . ........................ . . ......... . ... . .. . .......................... . .... ... . . . . .............. . . . ..... . .... . . .................. . . . .... ... . .. . .... ... .......... . ..... .. .... . . .. . ... . . . . . . .............................. .......... . . .. . . . ............. . . . . . ......... . .. . .... . . .. . . . . ..... . ... . . . .. ............ . . . . . . .... . . . . ............ ... . . . ... . .. .. ...... . . ............... ......... .. . . .................... .. ...... . ....... . . .. ..... .... . . . . . . . . ........................... . . ............ ...... ..... . . .. .. . . . . .. .. ... .. . . .. . ................ ..... . . . . ................... . ...... . . . ............ . . . ..... ... . .... . .... .... . . ..... .. . ....... . ... . . . . ... .. . . .. .. . . ......... .... . . . ......................... . . . ... . . .. . .. . . .. . . . . . . . .... .............. .. ....... . . ....................... . . .. . . ......... .. . ... .. . . . ... ... .. . ... ....... . ....... . . . . ..
lowQualScore : 2222 22 22 0 00000000000000000 2 3 3 7 77 3333333333333 33 3 33 3 7 333333333333333333333333333 3 00 888 0 0 8 88 0 888 88 22 55 0 8 5 5 888888888888888888888888 0 2 000000000 2 555 8 00 2 88888888888888888888888888 5 2222 222 2 0 8 0 55555555555555 0 0 5 88888 2 0000 5 0 000000000000000000 8 0 0 0000 000 0 88 0 5555 555 8888888888 0 88888 88 2222 2 5 22 8 555 2 2 0 0 0 2 000000000000000000000000000000 8888888888 2 0 88 0 5 5 8888888888888 0 0 0 0 2 555555555 0 88 0 0000 0 8 55 0 2 8 8 00000 8 222 0 8 2 22 222222222222 8 0 0 0 0 0 8888 0 8 8 8 666666666666 666 8 6 4 000 2 00 88 555555 2 2 222222222222222 000000000 77 0 0 00000000000000000000 88 000000 2 2222222 2 2 22 00000 5555 8 2 0 0 5 5 0 0 000000000000000000000000000 2 2 888888888888 888888 22222 0 2 55 22 5 0 0 0 55 88 555 88 2 2 88 0 2222222222222222 00000 5 5 0 0 5555555555555555555 5 888888 2 0 5 555555555555 0 0 2 88888 333 3 3333 3 3333 7777 7 3 33333 00 7 7777777 3 777 3 0 3 3 000 88 0 2 55 55 0 0 555555555 5555 2 0 2 3333333333333333333333333 3 3 3 333 3 3 00 0 55 0 0 00 0 3 7 2 0 5 2 2222 88888888888888 88 2222222 5 5 00000000000000000000000 5 2 88 0 2 555555555 88 2 222 22 7 7 0 888 000 22 8 444 4444444 0 0000000 0 7 7 7 66
consensus : AGAAAGGG----GGGGGGGGGTCGAAACNC------CAAACATNTC-CCATA-TGG-CCTCCGGATGTGAATTAGAAGATATATAAAATTAAATTGAT-A-ATAGTT--CAAAACTA--TTTTATTTGCGTAAATACGTATA--TA--ATT-TGCATATACGTCTAT--TAAAGGAATTGTCATGTAAGAAATACATTATCTTTTCTTTAAAAAAAA-AATAA-TGGG-TGTACAT--AA-ATATC--ATATA--CA-CTCTGTATACG-TCG-CGACATCGGAAAATA--CG--ACATCGTAT-------AGATT-TTTTGCTGTT--GAAT---TGTGAC---TGTGTCAAAATAAT--GT------T-------CTA-----TAAGACTT----ATCACA--TTTCAAATCTTATCACTTCTTAT--T---AT-----AAGTTTCA-TTCTCAATCCT-ATTGTCATA-AN--CTTTTCAAG-AT-CGGT-TT------------------TTTTTGG-TTGTT-TTTTTGTT----TTTC--AC-AT--TACATCC--GA---ATGAAA-TCT------TCA-TGATCTTTT-CT--ACTTT----ATCCAAACGTAGCAT-TACTTAGTA---GTATGTGTGCCT-TT-GCTG-AACACGCC--------------A-----AC--------GCACTTTNAAA------AAAAAATGAAGAAAAGT-GTAT--ATA-TACACATAAATCCAGTGGCGTGNT--GGGCT----AAA-AA-GTNA-GGGGGCAC----AAG--CTATC-ATAAA--CTTGG-TTAAAAGGGGGGGNG--CA-CAAACTTTAAAAA-AAAATTGGCAAAGCAATA---A-AAAGAT--AGAAAATAAGA-GATGGGCATAGACCTAACACAG-CGATTCCTT---AC---TGTATCA-AATAC-GG-TGAC-CA-TCCG-TATA-TATTTCAAA-GATC--C----GCCGAT--AGTCCAGAGACTCTTT---AGTTCAAAGGTCCG--ATAGTTCGA-AT---AG-CGCCATTGAC----G----AGAACAAGCTGTAA----A-AAAATTCTTAAA-CTTTATTTG-ACATTTCA-CGTCATT--GG--AGTGACT-TTAGAT--AA-T----AATTGAATTC--T-T-CAAATGAAATATGATTAT-CAA-----AATT-A--TTACCTTGTCAG-ATG-CGTGGATCAGNCAGNATAT---AC--------GATG----CGTCATCATAAAT-GAGC-T-AA-CCTAACTCGGT----ACAAAAAT-AAT-ATA-TGGATTCGGAGAAATATGTTATGGTACAT-GCAA-GAAAT-AATGTTTTTGAG-CAGC---TGAGAA--CTGCATATTAGAATTG--GTATTTTTTTNAC------T------C-CTCAT-----CTGATCATTCT-ATGT-AAAGAA-------------------AAAGTGGGGAGGGGG------CAACAA-ACGCCACTTATGC---C---AAAC-AT-TT-GTGC----CCCCCCCTTCC---AAAAAT----GAGGGAC-GTGCCCC--TCTG--GCACCCGCTCCC-CTTTTT-----GTCGNGCGCCCGTGTTACGCC-TAAGTAT-AGTTT--AATGTACAAA-TGTGNCATGTACACAATTGATATTC--GTTT--AAGTTAGAT-TTAAAACAATG-CAATTTAA-TCCA-AATGCA----TAAATAATNCAAACGAAATGCTG-AATAGTTA----------------TAT--G---GGCTGCTCTACAATCACTAAAT---ACAATTAC-ACAATTATACTTTTAATCGTANCTCCGTTAAANTTGAATCATCTACAATTGNTTANNANTTTCTGAGAGTCGATTAAAGTTTTAAATAAAA-CTCCAAACATACGGCGAAA----ATAA-AT-----------ACC--CTTCTT----TTGACGTGACGTCGCA--------------CA-A---GTAACGTCAAAATG-AANCAACG--------ATT--ATCTTAAACTATAC--TATGTTTAC--AT-ATGT-ATTATA-CATACGT-TAAT---GCTTCCTTACGAACATAC-GATAATCATTTTATGA-GAAANATAC----ACCCTATGAAAGAA-TTTTGA-GGAATATCATTTAA-TTTGAACGCGGGGCCGAAATTGGACCCAAACG
Reference ( family-613 ) : AGAAAGGG----GGGGGGGGGTCGAAACNC------CAAACATNTC-CCATA-TGG-CCTCCGGATGTGAATTAGAAGATATATAAAATTAAATTGAT-A-ATAGTT--CAAAACTA--TTTTATTTGCGTAAATACGTATA--TA--ATT-TGCATATACGTCTAT--TAAAGGAATTGTCATGTAAGAAATACATTATCTTTTCTTTAAAAAAAA-AATAA-TGGG-TGTACAT--AA-ATATC--ATATA--CA-CTCTGTATACG-TCG-CGACATCGGAAAATA--CG--ACATCGTAT-------AGATT-TTTTGCTGTT--GAAT---TGTGAC---TGTGTCAAAATAAT--GT------T-------CTA-----TAAGACTT----ATCACA--TTTCAAATCTTATCACTTCTTAT--T---AT-----AAGTTTCA-TTCTCAATCCT-ATTGTCATA-AN--CTTTTCAAG-AT-CGGT-TT------------------TTTTTGG-TTGTT-TTTTTGTT----TTTC--AC-AT--TACATCC--GA---ATGAAA-TCT------TCA-TGATCTTTT-CT--ACTTT----ATCCAAACGTAGCAT-TACTTAGTA---GTATGTGTGCCT-TT-GCTG-AACACGCC--------------A-----AC--------GCACTTTNAAA------AAAAAATGAAGAAAAGT-GTAT--ATA-TACACATAAATCCAGTGGCGTGNT--GGGCT----AAA-AA-GTNA-GGGGGCAC----AAG--CTATC-ATAAA--CTTGG-TTAAAAGGGGGGGNG--CA-CAAACTTTAAAAA-AAAATTGGCAAAGCAATA---A-AAAGAT--AGAAAATAAGA-GATGGGCATAGACCTAACACAG-CGATTCCTT---AC---TGTATCA-AATAC-GG-TGAC-CA-TCCA-TATA-TATTTCAAA-GATC--C----GCCGAT--AGTCCAGAGACTCTTT---AGTTCAAAGGTCCG--ATAGTTCGA-AT---AG-CGCCATTGAC---------AGAACAAGCTGTAA----A-AAAATTCTTAAAACTTTATTTG-ACATTTCA-CGTCATT--GG--AGTGACTGTTAGAT--AA-T----AATTGAATTC--T-T-CAAATGAAATATGATTAT-CAA-----AATT-A--TTACCTTGTCAG-ATG-CGTGGATCAGNCAGNATAT---AC--------GATG----CGTCATCATAAAT-GAGC-T-AA-CCTAACTCGGT----ACAAAAAT-AAT-ATA-TGGATTCGGAGAAATATGTTATGGTACAT-GCAA-GAAAT-AATGTTTTTGAG-CAGC---TGAGAA--CTGCATATTAGAATTG--GTATTTTTTTNAC------T------C-CTCAT-----CTGATCATTCT-ATGT-AAAGAA-------------------AAAGTGGGGAGGGGG------CAACAA-ACGCCACTTATGC---C---AAAC-AT-TT-GTGC----CCCCCCCTTCC---AAAAAT----GAGGGAC-GTGCCCC--TCTG--GCACCCGCTCCC-CTTTTT-----GTCGNGCGCCCGTGTTACGCC-TAAGTAT-AGTTT--AATGTACAAA-TGTGNCATGTACACAATTGATATTC--GTTT--AAGTTAGAT-TTAAAACAATG-CAATTTAA-TCCA-AATGCA----TAAATAATNCAAACGAAATGCTG-AATAGTTA----------------TAT--G---GGCTGCTCTACAATCACTAAAT---ACAATTAC-ACAATTATACTTTTAATCGTANCTCCGTTAAANTTGAATCATCTACAATTGNTTANNANTTTCTGAGAGTCGATTAAAGTTTTAAATAAAA-CTCCAAACATACGGCGAAA----ATAA-AT-----------ACC--CTTCTT----TTGACGTGACGTCGCA--------------CA-A---GTAACGTCAAAATG-AANCAACG--------ATT--ATCTTAAACTATAC--TATGTTTAC--AT-ATGT-ATTATA-CATACGT-TAAT---GCTTCCTTACGAACATAC-GATAATCATTTTATGA-GAAANATAC----ACCCTATGAAAGAA-TTTTGA-GGAATATCATTTAA-TTTGAACGCGGGGCCGAAATTGGACCCAAACG
gi|1 : ----GGGGGGGGATC----CTC------C-----TCTCGCCATAATGGGCCTC--GATGTGAAT-AGAAGATACATCAAATTAAATT------ATAGTT--CAAAACTA--TTTT---------------------TA--ATT-TGCATATACGTCTATATTATAAGAATTGTCA-GTAAGAATCTCATTATCTTTTCTTTTAAAAAAA-AATAAGTGGGGTGTACAT--AAGATATCTCATATATTCA-CTCTTTATAC--TCG-CAATAGTGCATAATAATTGTTACATTGTACGTTCCGGAAATGGTTTTGCTGTTAAGAACATATGTGAC---TGTGTAAAAATAATTTGT------TACATGTACTAGTACATAAGACTTTTATATCAAACTTTTCCAATCTTGTCA-TTCTTATATT---ATCCCTCAGGTTTCAATTCTCAATTCT-ATTGT-ATA-AGGACTT----------CGGT-TT------------------TTTG-GG-CTGTT-TTTTTTTT----TTAA--AC-AT--TA-ATTCTGGA---ATGAAAATCTGTAATTTCAGTGATCTTTTTCTTAACTTTTTTTATCCAAACGTAGCAT-TACTTAGTA---G---G-GTGCTT-TG-GCTACAGCACGCCTATAGTAAGTAATTA-----ACT-------GCACTTTGAAAGAAAAAAAAAAATGAAGAAAGGT-TTATTAATT-TACACATAAATCCA-TG-CTTGGTTGGGGCT----AAA-AAAGTGA-GGGGGC-C----AAGTCCTATC-ATAAATTCTTGG-TTAAAAAGGAGGGAG--CAGCAAAATT----AA-AAAATTGGCA--GCAATA---A-AA-GATTCAGAAAATAGTA-GA-GGGCATAGACCTTAAACAGGCGATTCCTTCAAAC---TGTATCA-AACAC-GGGTGACGCA-TCCAATATAATATTTCAAA-GATT--CCGGCGCCGATTAGGTCC-GAGACTTTTTTTAGGTTCAAAGGTCCG--ATAGTTCGA--T---AG-CGCCAT------------------AAGCTGTAA----A-AAAATTCTTAAA-CTTTATTTG-ACATTTCA-CGTT-TTGAGG--CGTGAC-GTTAGAT--AATT----AATTG-ATTCA-TGT-CAAATGAAAAATGATTATCCAA-----AATTCA--TTACATTGTCCGAATT-CGTGGATCAGCAAGTAT-T---AA--------GATGGCATCGTAATCATAAAT-GAGC-TAAA-GCTAACTCATC----ACACAATTAAAT-ATA-TGGATTCGGAGAGA-ATGTTAT--TA-AT-GAAA-GAAAT-AG---TTTTGAG-CAGCTGATGAGAA--C-GCA-ATTAAAATGA--GTATTTTTTTTAA------CGTGGTAT-CTCAT-----CTGAT-ATT-T-ATGT-AAAGAA-------------------AAAGT-GAAAGGGGG------C-ACAA-CCGTCACTTATGCCCAC---AAACTAT-TT-GTG-----CCCCCCCTTCCAAAAAAAATAGAAGAGGGACGGTGCCCC--TCT-------CCGCTCCCACTTTTT-----GTCCTACGCCTGTGT-------TAAGTAT-AGTT----ATGTACAAAGTGGGCCATGTACACAA-TGATATTC--ATTT--AAGTTAGATCTTAAAA----G--AATTTAA-TCCA-AAT-------TAAATAAGCTAAACGAAATGCTGAAATAGTTA----------------TATGGG---GGCTGCTC-AC-ATCAT---AT---ACAATTACAACAATTAT
gi|10 : ggaatctttaaaaaataaaacgttatgggttaaccctcgggttttagccgttatatttgggcagcaagatgattttattttattcatttatctcaaggatgactttatctaaacgcatctaccactacttataaaaggggacgatgatgggcatcggcatgttaaaatgatggtaaatctaccgggcatttcaaaatatgtggggctcaagttccttggctgcatgtatacatgtgcctggtaaaaatttttgttttgcagtgaatttcttatagcatgtttctaatgtattagattatggtcctacgggttatttaaactaaaaaagtagtacaatgtataggcccataaccaagctataacgctattgttactattttctttcaataaatctgaacactgtgcataatgttaagtagagagcattgatttttcatacatacgttgcttttgcacaaaccacgaactcgtgcgatctgtaagggggggggggggtgtttcgcaattaccaaaatccttggctttgtgcgctaaggagattatactgatttaatgaagcagtctttgaaatattggacatacgattgttatatcttccattttcaaattacagtatgcataattatatgtgattataattgcaaatgctttcttcatactcaatatattcacatcatagcaacaagctgctgaaaatgcatcaatatgtcatacaaagtttactgtttaaaactatcatattttgccgttcatacgtggaaactaaccccggaaacgaatattagacagtaaaatagtaagatttattcttccaccgattgtccagctttgactaaaaatttaggatagagcgtttacaagagatacATTTTCTGAG-GTCAATTAAAGTTTTAAATAAAA-CTCCAAACATATGGCAAAA----ATAA--T-----------ACC--CTTCTT----TTGGC-TGACGTCGCAAATGTTGGACGTAGCA-AATAGTAAC-TCCAAATG-GATCAAGG--------ATT--ATCTTAAACTATAC--TATGTTTAC--AT-ATGT-ATTATA-TATACG--TAAT---GCTT-CTTA-GAACAT-T-GATAATCATTTTA--ATGAAAGATAC----A-CCTAT--AAGAA-TTTTGA-GG-ATATTATTTAA-TTTGAACGCGGGGCCG-AATTGGACCCAAAcacgcttacgcaggtct
gi|11 : aAAAA-TATAA-TGGG-TGTAAAG--AT-ATATT--ATATA--CAACTCTGTATACA-TCGGCGATAT-----AATA--CG--ACATCGGA--------AAATT-TTTTGCTGTT---AGT---TGTGACCAGTTTGT-AAAATAAT--GTGTTACAT-------GTA-----TAAGA-TT----ATCAC---TTTCAAATCTTAT-ACTTCTTCT--TTATAT-----AAGTTTCA-TTCTCAATCCT-ATTGTCATA-AC--TTTTTCAAGTAT-CGGT-TTTTGGTTGTTGTTGTGTTTTTTTTGG-TTTTTGTTTTTGTT----Tgaaaccg
gi|12 : CAGTGGCGTGCT--GGGCTC---AAATAA-GTTAGGGGCACATAATTAAG--ACATT-NNNNN--NNNNN-NNNNNNNNNNNNNNN--NN-NNNNNNNNNNNNN-NNNNNNNNNNNNNNNNNN---N-NNNNNN--NNNNNNNNNNN-NNNNNNNNNNNNNNNNNNNCGG---ATTCCT----------AT-TCAGAATGC-GG-TGAC-CA-TCCG----A-TATT-CA--------------------------CAG-GACTCTTT---AGTTCAAAGATCCA--ATAGTTCGA-AT---gtgttt
gi|14 : GTGCATTGCAAAGAAATTGATATCTTTGAC-TTGC---TGAGAA--CTACATATTAGAATTGA-GTATTTTTTTTACCA----T------CGTTTATTCTAACTGATTCTTCT-ATGTAAAAGAAATTTGTGTTTTTAAAAAACAAAGTGGGGGGGGGGGGTTTACAAGAA-ACACAACTTGTCC---C------C-ATCCT-G-GC----CCCCCgcttgataattaaga
gi|16 : ttgtC--TGTGTTCGTCAAT-TTGA-ATTATT-CATATGT--AAC---GCGTC-TTACGAATATGC-GATATTCATTT-ATGA--ATACATATGATTACTCTATGAAATAA-TTTTGA-AGAATATCATTTAC-TTTGGACGAGTGACC--AATT
gi|19 : TTA--AAGTTAGAT-T-AGAGCAATG-CAATATCA-TCCA-AATGCA------AATACTGCAAACGAAATGCTG-AATAAT
gi|2 : AGAAAGGGAGGAGGGGGGGGG--GGAACTCAGTGTATAATCCTAT--CCATA-TGG-CCTCCGGATGTGAATT-GAAGATATATAAAG--AAATTAATAA-AAAGTTCACAAAACTAATTTCTATTTGTGTAAATACGTATAACTAGTATTATATATATACATCTAT--TAAAGGAATTGTCATGTAAGTAATAC-TTATCTTTTCTTTAAAAAAAATAATAA-TGGG-TGTA-ATTCAA-TTAT----TTTA--CA-TTCTGTATATGTTTA-CGGCATGGGAAAA-------------ATAT-------AGATT-TTT----------AA------TGAC---T-TACC-ACAT------T------T-------C--------AAATCTT----ATCAC---T------TCCTATGA----TAAT--T---AT-----AAGTTTCA-TCCTCAATCCT-ATTGTCATA-AA--CTTTTCAAG-AT-C-GT-GT------------------TTTCCGG-TTGTT-TTTTTATG----TTTC--ACTAT--TACATGT--GA---ATGAAA---T------TCA-TGATCTTTTGTT--ACTTT----ATCCAAACGTAGCATATACTTAGTACGTGTATGTGTGTCTGTTAGCTG-AACACGCC--------------A-----AC--------GCACATTT---------AAAAAATGAAGAAAAGT-GTAT--ATA-TACACGTAATTCCAGTGGCGTGTT--GGGCTAAAAAAA-AA-GTCA-GGGGACAC----AAA--CTATCAATAAA--CCTGGATTAAAAGGGGGGGGGGACA-CAAACTTT-AAAA-AAAATT-GCAAAGCAATAAGCA-AAAGATAGAGAAAATAAGA-GATGGACATAGACCTAACACAA-CGATTCC------------TATCA-AATAC-GG-TGAC-CA-TCC----TA-TATTTCAAA-GATCCTC----GCCGAT--ATTCCAGATACTTTTT---ACTTCAAAGGTCCG--ATAGTTCGA-AT---AGACGCCATTGATGTCGG----AGAA-AAGCTGT---------AATTTTTTAAAACTTTATTTG-ACATTTAA-CG----------------CT-TTAGAT--AA-T----AATTGAAATCCAT-T-CAAATGAAATATGATAAT-AAAAAAAGAATA-A--TTACCTTGTCAG-ATG-CGTGGATAAAGCAGGATA----AC--------GATG----CATCATCATAAATAGAGCAT-AACCCTAACTCGGT----ACAAAAAT-ATC-ACA-TGAA-TCGGAGAAATATGTTATAATACAT-GCAA-GAAAT-AATGTTTTTGA--CAAC---TGAGAAC-CTGCATATTAGAATTG--GTATCCTTTTGAT------T------C-CTCAT-----CTGACCATTCT-ATGT-AAAAGA-------------------AAAATGGGGAGGGGG------CCACAA-AC-CCACTTATGC---CAAAAAACGAT-TT-GTGCCCGTCCCCCCCTTCC---AAAAAT----GAGAGAC-GTGCCCCCGTCTGAAACACCCGCCCCC-CCGTTT-----GTCGA-CGCCCGTGTTACATC-TGAGTATAAGTTT--AATGTAGAAA-TGTGTCATGTACACAATTGATATTCCAGTTTTAAAGTTAGAT-TTAAAACAATGCCAATTTAA-TCCA-AATGTAATGCTGAATAGTTCAATCGAAGTAC----AT-GTAA----------------TAT--G---GGCTGCTCTGCAATCACTAAAT---ACAATTAC-ACAATTAT--TTTTAATCGTAGCTCTGTTAAAA-TGAATCATCTACAATTGATTACAAATTTCTAAGAGTCGATTAAAGTCT--AATAAAACCTCCAAACATTCGGCGAAA----ATAA-AT-----------ACC--CTTCTT----TT-ACGTGACGTCACA--------------CAGA---GTAACGTCAAAATGCAAACAACG---------TT--ATCTTAAACTATAC--TATATTTAC--AT-ATGT-ATTATA-CATACGT-TAAT---GCTTCCTTACGAAAATAT-GATAATCATTTTATAACAAAACATAC----ACCTTAT-AAGGAATTTTTGA-GGAATATCATTTAA-TTTGAATGCGGGGCCAAAATTGGACCCAAACG
gi|20 : A-TTATGAAGGAATATCGTTTAA-TTTGAATGCGGCGCCGAAATTGGCCCCAAGCGa
gi|21 : -TTTGAACGCGGGGCCGAAATTGGACCCAAAcacaaagtcctt
gi|3 : T-TT------------------TTTTTGG-TTTTT-GTTTTGTT----TTTTTAAC-AT--TA-ATC---GA---ATGAAA-T-T------TCA-TGATCTTTT--T--A-TTT----ATCAAAGTGCA--AT-TACTTA--A---GTATGTGTGCTT-TT-GCTG-AAC-CGCT--------------ATAGATACAGTAATAAGCACTTCGAAA------AAAAAATGAAGAAAAGTTGTAT--TTAATACACATAAACCCAGTGGCGTG--------------AA-AA-GTGA-GGGGGCAC----AA---CTATC-ATAAAG-TTTGG-TTAAAAGGGGGAGC---CA-CA--CTTTAAAAACAAAATTGGCAAAGCA-TA---ATAAAGA---AGAAAATAAGAAGATGGGCATAGAC-TAACACAG-TGTTTTTTT---ACATATGTATCA-AATACTGG-TGAC-CACTCTA-TATA-TATTTCAAACGATCG-C----GCCGAT--AGTC-AGATACT-TCT---AGTTCAAAG-TCGA--ATAGTTGAA-AT---A--------TGA----------AGAACAAGCTGTAATAAAA-AAAATTCTTAA--CTTTATTTGGACATTTCA-CGTCATT--GG--AGTGACT--TAGAT--AA-T----AATGAAATTC--T-T--AAATGAA-TATGATTAT-CAA-----AATT-G--TTAC-TTGTC-G-ATGGCGTGGATCAGTCAGGATAT---ATAAGGGGGGGGGG----CG--ATTA-AAAT--AGC-T-AA-CCTAACTCG-T----GCAAAAAT-AATCATA-TGGATTCGAGGCAAT-TGTTATGGTACAT-GCAA-GAAAT-AATGTTTTTGAGACAGC---TGAGAAACCTGCATATTAAAATTGCAATATTTTTTTAACGTGGTAT------C-CTCAT-----CTGATCATTCTCATGT-AAAGAA-------------------AAAGTGGGGAGGGGG------CAGCAAGACGCCATTAATGC---C---AA-C-AT-TTTGTGC----CCCCCCCTTCC---AAAA-T----GAGGGAC-GTGCC----TCTG--GCACC---TCCC-TTTTTTTGGGGGGGGGGGGTCC---CTACGCCGTAAGTAT-AGTTTTAAATGTACAAA-TGTGACATGT-CACAATTGATATTC--ATTT--AAGTTAGAT-TTAAA-CAATG-CAATTTAAATTCAGAATG------TAAATAAC---AACGAAATGCTG-AATAGTTAAATTGAAGTAATAATATAT--ATTTGGCTGCTCTACAATCACTAAATTAGACAAT-AT-ACAATTATACTTTTAATCGTACCTCCATTAAACTTGAAT-ATCTACAATTGCTTAACACTTTCTGAGAGATAATTAAAGTTTTAAATAAAA-AT-CAAACATACGGCG-AA----ATAAGAT-----------ACC--CTTCTT----T--ACGTGA-GTCGCA--------------CA-A---G-AACGTC-AAATG-CACCAACG--------ATT--ATCTT-AACTATAC--TATGTTTAC---T-ATGTAATTATA-CATACGTAAAAT---GCTT-CTTACTGACATATGGATAATGATTTTTTAT-GAAAACTA-------CCTATGAAGGAA-TTTTGA-GGAATATCATTTAATTTTGAAAGCGGGGC--GAATTGGACCCaggaccaagt
gi|4 : ttAGAAAGGG----GGGGGGGGTCCGAAACGC------CAAACACCTT-ACATccagacaggagcctttaag
gi|5 : ggacacctttaaaacctttaaagtaatgagttcccctagattattttacgtatataatatttgtagcgagatgaattttaatttattttattcacatttattcaagggctcagttcgtcgtttcaaacttatatttctacatagtacacagcacctaccactaccataacaaggggaaggagtgatcgcataaataaaaattatggtaaatctacgacattctcaaataatgtggggccaagttccctagctgttgctacaatgtacacagtaatatatatgtgcctgtaaaagtttttgttttgcagaattactttacatgttttaatgtattagattatggtcctatatttaaaagtacattaaaacaactaccgaacactattggttactattttcttcattaaaatcgtggaacacgtgcatgttcaagtagagcatgatatgttcattcaatttagtagcgtgtgcataaaccaccaacccgtgcggatctAGAAAGGG----GGGGGGGGGTCGAAACAC------CAAACATATC-CT-TA-TGG-CCTCCGGATGTGAATTAGAAGATATATAAAATT-----GAT-ATATAGTT--CAAA-CTA--TTTTATTTGCGTAAATACGTATA--TA--------------------T--TAAAGGAATTGTCATGTAAGAAATA-ATTATCTTTTCTTTAAGAAAAA-A-TAA-TGGG-TGTACAT--AA-ATAT---ATACA--CA-ATCTGTTTATG-TTA-CGACATCGGAAAATA--C------CTGTAT-------AGATT-TTTTGCTGTT--G--T---TATGAC---TGTGTCAAAATAAT--GT------T-------CTA-----TAAGACTT----ACCACA--TTTCAAATCTTATCACTTCCTA---T---AT-----CAGATCCA-TTTCCAATCCTGATTGTCCTATAC--CTTTTCAAG-ATCCGGTCTT------------------TTTTTGGTTTGCA-TTTTTGTTTATCTTTC--AC-ATTCTACATCT--GATCCATGGAATTTT------TCA-TGATCTTTT--T--AC-TT----ATCC-AACGTAGCAT----TTATTA---GTATGTGTGCCT-TT-GCTG-AACACGCC--------------A-----AC--------GCACTTTT-TA------AAAAAATGAAG-AAAGT-GTAT--ATA-TACACATtgttgcgctttgacaaatccagggagattatagtgttataatgaagccatctttgaaatattggaattacgattgttcgatatcttcttccattttcaaattacataattacggtgattataatacaatgctttctttaatactcaatttttactttacaatagatagtgttcaaagtaattatgaatatgtcacgtgatctttactttttttatacaacaagatgctggaaaatacatcaattgttatataaaaagtcttactgtttaaactatctttatttcgccggtcaatggaaaactggtcgaaaacgaatatagaagtttatttccacgatactctttctgactaaagacatttagaaag
gi|6 : ccaccaactcgtgtgggtctTTAAGTAAAA-CTCAAAACATATGTCAAAATAAGATGA-ATTTTAATTTTTAATCGTCTTCTTCATGTTGATGTGACGTTGCA--------------TA-------AACATCAAAATG-ACACAATGTTAATATAATTTAGTTTAAAACTATATAGTGTATTTAC--ATCATAT-ATTA
gi|6 : aaaaaatatagtgcacgcttgACTATA---TA-GTGTAC--AT-GTAT--TTACATCATATAT-TAGTAAAGCCTCTTT-CGAACATAC-GATTATCATTTTCTGA--AAAGATAC----ACCCAGTGAAAGAA-TTTTGA-GAAGCATCATCGAA-TTTAGACGCTGGGCCGAATTTGGCCCCGAACGgtaaagcctctnactatatagtgtacatgtatttacatcatatattagtaaagcctctttcgaacatacgattatcattttctgaaaagatacacccagtgaaagaattttgagaagcatcatcgaatttagacgctgggccgaatttggccccgaacgtaccaagtcct
gi|9 : aaaaaatatagtgcacgcttgttaagtaaaactcaaaacatatgtcaaaataagatgaattttaatttttaatcgtcttcttcatgttgatgtgacgttgcataaacatcaaaatgacacaatgttaatataatttagtttaaaactatatagtgtatttacatcatatattagtaaagcctctnGG-GGTGGGGATACGCCAAACACAA-CGATTCCT------------ATCA-AATAC-GA-TGAC-CA-TTCC-TATA-T-TTCCAAA-GG---------GTCGA---AGTCCAGCGACTCTCT---AGTTCAAAGGTCCGCCATAGTTCGACATTTCAG-CGTCATTGACCAGTGACTTAGATTAAACTGTAA----ATTGAATTCTTtaccaagtcct
gi|9 : TTCG-ACATTTCAGCGTCATT--GACCAGTGACT--TAGATTAAA-CTGTAAATTGAATTC--T-TTCCTATGAAATATAATCAT-TAA-----AATT-AATTTACCTTGTCAG-ATG-CGT-----AAGCGATATATGTAAC--------GATG-------CATCATA-----------------AACTCGGTCAAAAGAAAAAT--GT-ATAGTAGATTCGGAGAAATATGTtcctatgaaatataatcattaaaattaatttaccttgtcagatgcgtaagcgatatatgtaacgatgcatcataaactcggtcaaaagaaaaatgtatagtagattcggagaaatatgtg
6 sequences could not be aligned to this reference sequence:
Unaligned ( gi|7 ): ATGGTACATCTACCGTGGCTTCTCAATAATGTAGTGCTCGAAGTTCGCCTGTGTTGCTAACACAAGTATACAATGTGCTGTAAAAGTTTTTGTTTTGCAGAATTAATTTACACGTTTTAATGTATTAGATTATGTTCCTACGTGTATTTAAAAACTAAAAGTACATGTATGAAAGTATAAGCTATTTGCTAACTGATTTTCTTCAATAAATCGTGGAACACGTGCATACATGTATCAAGTAGAGGCAATGATTTTCATACATACGGAGGCCTTTTTGCCAACCACCACTCGCTCGTGGCGTATCTAGAAGGGGGGGGGGG
Unaligned ( gi|8 ): AAAATCATAAAACAAACACATTGTCGAAAGAAAGTAGGGGTAACGTCCCCCTGTTGCTACGTGCCTATAGAACAATTCTTGTTTGTACAGTCACCTTACATGTGTTAATTAATACTTCATGTGTACTGGAACGTGTTCTATTTCATTGTCCTATCAAGAAATACATGTAGCCATTATTTACTATTTTCATCCACAAATGCTCATGAAGTAAAGCACGACTTTCACACATGGAAGTCATTTACGCACGGCCCACCCACCGTCCACTTATAGCATTAGTGGCATGTGCACAAATCACGTACGGATCTAAAAGGGGG
Unaligned ( gi|13 ): GGGCTCAATTCTTCGCTTTAAGTTTGCATTCTACAATCATTCACTACTACCTTAAAAAATAATAAACTGAACTTCGCATGTAAAATAATGAAGCAACCACATTGTTAAAAGAATGTGGGGCCCAAGTTTCCCTGTTGCTACGTGCCTATAGAACAATTCTTTGATTTGATTGTACAATCACCTTAATGCGTTAA
Unaligned ( gi|15 ): GTTTATACAACAAGCTGCTAGAAAATGCATGAATTGTCATATAGAGTTTTATTATTTAAAAAACTATCACATTTCGCCGGTCATTGGAAACTGGTCGAAAATGAATACTAGACAGGTAAATTGATGATTATTTCCACGATGATTCTTTGACTAAATTGGACATTTAGCAAGATA
Unaligned ( gi|17 ): GGTAAATCTACGACATTCTCAAAATAATGTGCGGCCAAGTTCCCTAGCTGTTGCTACATGTACAATATATATATGTGTCTGTAAA
Unaligned ( gi|18 ): ACAATTGTTTGATATATCCTTCTTCCATTTTCAATTTACATAATTATCAGTGATTAATTTAATCATTTTCTTCATACTCAATT
Alignments
lowQualScore : 111111111111111111111111111111
lowQualScore : 2222 222222 1111 1 1 11 333333333333 1 11 11 444444444444444444444444444 11 111 1 1 11 1 333 11 11 11 1 1 777777777777777777777777 1 555555555 111 11 77777777777777777777777777 2222 222 1 33333333333333 1 1 11111 1111 555555555555555555 1111 111 1 11 1 2222 111 5555555555 1 44444 2222 11 111 1 1 1 000000000000000000000000000000 4444444444 1 11 1 3333333333333 1 1 1 222222222 1 22 1 2222 1 11 1 22222 333 11 666666666666 2222 444444444444 111 111 11 111111 8888888888888888888 3333333333 222 1 1 333333333333 11 222222 2222222 11 22222 1111 1 1 555555555555555555555555555 333333333333 2222 11111 1 11 1 1 1 11 111 22 22 7777777777777777 22222 1 1 7777777777777777777 222222 1 4444444444444444 22222 3333 2222 1 11 33333333 1 33333 11 2222222 1 222 1 111 11 1 11 1 1 444444444 1111 1 88888888888888888888888888 222 1 11 11 1 1 2222 55555555555555 11 2222222 88888888888888888888888 11 333333333 11 111 111 111 11 111 2222222 2222222 1
lowQualScore : 1111 77 33 1 888888 333 3 1 6666 3 3 6 44 222222222222 3 88 7 88 7 3 555555555555555555555555555 7 44 000 0 0 8 33 0 222 33 00 66 0 2 2 3 111111111111111111111111 0 3 111111111 0 777 8 22 3 44444444444444444444444444 2 1111 999 3 3 8 5 22222222222222 0 0 2 55555 3 4444 2 8 999999999999999999 3 8 8 7777 444 0 33 5 4444 777 5555555555 0 33333 55 1111 3 2 33 8 777 3 3 0 0 0 3 222222222222222222222222222222 5555555555 3 0 33 0 2 2 4444444444444 0 0 1 0 3 333333333 0 33 0 0000 0 5 77 0 5 5 5 11111 5 333 8 2 2 11 333333333333 0 8 8 8 8 8 5555 8 0 3 0 666666666666 666 0 5 6 444 3 11 88 777777 0 3 5555555555555555555 2222222222 111 0 0 333333333333 9 3 33 666666 3 8888888 3 1 00 55555 8888 2 9 0 0 2 2 1 1 999999999999999999999999999 3 3 111111111111 6 1111 99999 0 3 66 22 2 0 0 0 33 88 777 33 3 3 33 1 0000000000000000 55555 6 2 0 0 7777777777777777777 2 888888 9 0 6 6666666666666666 3 33333 0000 8888 3 6 88 11111111 3 33333 33 6 3333333 3 555 3 1 7 7 999 33 0 66 2 22 0 0 333333333 2222 3 0 3 99999999999999999999999999 7 7 7 333 7 3 88 1 66 5 1 22 1 7 0 3 0 2 3 1111 11111111111111 33 4444444 2 2 00000000000000000000000 6 9 00 1 0 999999999 33 3 000 99 6 6 8 444 444 33 0 111 9999999 1 1111111 0 6 6 5 66
lowQualScore : .... .. .. . ...... ... . . .... . . . .. ............ . .. . .. . . ........................... . .. ... . . . .. . ... .. .. .. . . . . ........................ . . ......... . ... . .. . .......................... . .... ... . . . . .............. . . . ..... . .... . . .................. . . . .... ... . .. . .... ... .......... . ..... .. .... . . .. . ... . . . . . . .............................. .......... . . .. . . . ............. . . . . . ......... . .. . .... . . .. . . . . ..... . ... . . . .. ............ . . . . . . .... . . . . ............ ... . . . ... . .. .. ...... . . ................... .......... ... . . ............ . . .. ...... . ....... . . .. ..... .... . . . . . . . . ........................... . . ............ . .... ..... . . .. .. . . . . .. .. ... .. . . .. . ................ ..... . . . . ................... . ...... . . . ................ . ..... .... .... . . .. ........ . ..... .. . ....... . ... . . . . ... .. . .. . .. . . ......... .... . . . .......................... . . . ... . . .. . .. . . .. . . . . . . . .... .............. .. ....... . . ....................... . . .. . . ......... .. . ... .. . . . ... ... .. . ... ....... . ....... . . . . ..
lowQualScore : 2222 22 22 0 888888 888 0 0 0000 3 3 7 77 000000000000 3 33 3 33 3 7 333333333333333333333333333 3 00 888 0 0 8 88 0 888 88 22 55 0 8 5 5 888888888888888888888888 0 2 000000000 2 555 8 00 2 88888888888888888888888888 5 2222 222 2 0 8 0 55555555555555 0 0 5 88888 2 0000 5 0 000000000000000000 8 0 0 0000 000 0 88 0 5555 555 8888888888 0 88888 88 2222 2 5 22 8 555 2 2 0 0 0 2 000000000000000000000000000000 8888888888 2 0 88 0 5 5 8888888888888 0 0 0 0 2 555555555 0 88 0 0000 0 8 55 0 2 8 8 00000 8 222 0 8 2 22 222222222222 8 0 0 0 0 0 6666 0 8 8 8 666666666666 666 8 6 4 000 2 00 88 555555 2 2 0000000000000000000 8888888888 111 0 0 888888888888 2 2 88 000000 2 2222222 2 2 22 00000 5555 5 2 0 0 5 5 0 0 000000000000000000000000000 2 2 888888888888 5 2222 22222 0 2 55 22 5 0 0 0 55 88 555 88 2 2 88 0 2222222222222222 00000 5 5 0 0 5555555555555555555 5 888888 2 0 5 5555555555555555 2 88888 7777 3333 3 7 33 00000000 3 33333 00 7 7777777 3 777 3 0 3 3 000 88 0 55 5 55 0 0 555555555 5555 2 0 2 33333333333333333333333333 3 3 3 333 3 3 00 0 55 0 0 00 0 3 7 2 0 5 2 2222 88888888888888 88 2222222 5 5 00000000000000000000000 5 2 88 0 2 555555555 88 2 222 22 7 7 0 888 000 22 8 444 4444444 0 0000000 0 7 7 7 66
consensus : AGAAAGGG----GGGGGGGGGTCGAAACNC------CAAACATNTC-CCATA-TGG-CCTCCGGATGTGAATTAGAAGATATATAAAATTAAATTGATA-ATA-GTTCA--AAACTA--TTTTATTTGCGTAAATACGTATA--TA--ATT-TGCATATACGTCTAT--TAAAGGAATTGTCATGTAAGAAATACATTATCTTTTCTTTAAAAAAAA-AATAA-TGGG-TGTACAT--AA-ATATC--ATATA--CA-CTCTGTATACG-TCG-CGACATCGGAAAATA--CG--ACATCGTAT-------AGATT-TTTTGCTGTT--GAAT---TGTGAC---TGTGTCAAAATAAT--GT------T-------CTA-----TAAGACTT----ATCACA--TTTCAAATCTTATCACTTCTTAT--T---AT-----AAGTTTCA-TTCTCAATCCT-ATTGTCATA-AN--CTTTTCAAG-AT-CGGT-TT------------------TTTTTGG-TTGTT-TTTTTGTT----TTTC--AC-AT--TACATCC--GA---ATGAAA-TCT------TCA-TGATCTTTT-CT--ACTTT----ATCCAAACGTAGCAT-TACTTAGTA---GTATGTGTGCCT-TT-GCTG-AACACGCC--------------A-----AC--------GCACTTTNAAA------AAAAAATGAAGAAAAGT-GTAT--ATA-TACACATAAATCCAGTGGCGTGNT--GGGCT----AAA-AA-GTNA-GGGGGCAC----AAG--CTATC-ATAAA--CTTGG-TTAAAAGGGGGGGNG--CA-CAAACTTTAAAAA-AAAATTGGCAAAGCAATA---A-AAAGAT--AGAAAATAAGA-GATGGGCATAGACCTAACACAG-CGATTCCTT---AC---TGTATCA-AATAC-GG-TGAC-CA-TCCG-TATA-TATTTCAAA-GATC--C----GCCGAT--AGTCCAGAGACTCTTT---AGTTCAAAGGTCCG--ATAGTTCGA-AT---AG-CGCCATTGAC-----AG-AAC-------AAGCTGTAA----A-AAAATTCTT--AAACTTTATTT-GACATTTCA-CGTCATT--GG--AGTGACTTTAGAT--AA-T----AATTGAATTC--T-T-CAAATGAAATATGATTAT-CAA-----AATT-A--TTACCTTGTCAG-AT-GCGTGGATCAGNCAGNATAT---AC--------GATG----CGTCATCATAAAT-GAGC-T-AA-CCTAACTCGGT----ACAAAAAT-AAT-ATA-TGGATTCGGAGAAATATGTTATGGTACAT-GCAA-GAAAT-AATGTTTTTGAG-CAGC---TGAGAA--CTGCATATTAGAATTG--GTATTTTTTTNAC------T------C-CTCAT-----CTGATCATTCT-ATGT-AAAGAA-------------------AAAGTGGGGAGGGGG------CAACAA-ACGCCACTTATGC---C---AAAC-A-T-TTGTGC----CCCCCCCTTCC---AAAAAT----GAGGGAC-GTGCCCC--TCTG--GCACCCGCTCCC-CTTTTT-----GTCGNGCGCCCGTGTTACGCC-TAAGTAT-AGTTT--AATGTACAAA-TGTGNCATGTACACAATTGATATTC--GTTT--AAGTTAGAT-TTAAAACAATG-CAATTT-AATCCA-AATGCA----TAAATAATNCAAACGAAATGCTG-AATAGTT--------------ATAT--G-----GGCTGCTCTACAATCACTAAAT---ACAATTAC-ACAATTATACTTTTAATCGTANCTCCGTTAAANTTGAATCATCTACAATTGNTTANNANTTTCTGAGAGTCGATTAAAGTTTTAAATAAAA-CTCCAAACATACGGCGAAA----ATAA-AT-----------ACC--CTTCTT----TTGACGTGACGTCGCA--------------CA-A---GTAACGTCAAAATG-AANCAACG--------ATT--ATCTTAAACTATAC--TATGTTTAC--AT-ATGT-ATTATA-CATACGT-TAAT---GCTTCCTTACGAACATAC-GATAATCATTTTATGA-GAAANATAC----ACCCTATGAAAGAA-TTTTGA-GGAATATCATTTAA-TTTGAACGCGGGGCCGAAATTGGACCCAAACG
Reference ( family-613 ) : AGAAAGGG----GGGGGGGGGTCGAAACNC------CAAACATNTC-CCATA-TGG-CCTCCGGATGTGAATTAGAAGATATATAAAATTAAATTGATA-ATA-GTTCA--AAACTA--TTTTATTTGCGTAAATACGTATA--TA--ATT-TGCATATACGTCTAT--TAAAGGAATTGTCATGTAAGAAATACATTATCTTTTCTTTAAAAAAAA-AATAA-TGGG-TGTACAT--AA-ATATC--ATATA--CA-CTCTGTATACG-TCG-CGACATCGGAAAATA--CG--ACATCGTAT-------AGATT-TTTTGCTGTT--GAAT---TGTGAC---TGTGTCAAAATAAT--GT------T-------CTA-----TAAGACTT----ATCACA--TTTCAAATCTTATCACTTCTTAT--T---AT-----AAGTTTCA-TTCTCAATCCT-ATTGTCATA-AN--CTTTTCAAG-AT-CGGT-TT------------------TTTTTGG-TTGTT-TTTTTGTT----TTTC--AC-AT--TACATCC--GA---ATGAAA-TCT------TCA-TGATCTTTT-CT--ACTTT----ATCCAAACGTAGCAT-TACTTAGTA---GTATGTGTGCCT-TT-GCTG-AACACGCC--------------A-----AC--------GCACTTTNAAA------AAAAAATGAAGAAAAGT-GTAT--ATA-TACACATAAATCCAGTGGCGTGNT--GGGCT----AAA-AA-GTNA-GGGGGCAC----AAG--CTATC-ATAAA--CTTGG-TTAAAAGGGGGGGNG--CA-CAAACTTTAAAAA-AAAATTGGCAAAGCAATA---A-AAAGAT--AGAAAATAAGA-GATGGGCATAGACCTAACACAG-CGATTCCTT---AC---TGTATCA-AATAC-GG-TGAC-CA-TCCG-TATA-TATTTCAAA-GATC--C----GCCGAT--AGTCCAGAGACTCTTT---AGTTCAAAGGTCCG--ATAGTTCGA-AT---AG-CGCCATTGAC----GAG-AAC-------AAGCTGTAA----A-AAAATTCTT--AAACTTTATTT-GACATTTCA-CGTCATT--GG--AGTGACTTTAGAT--AA-T----AATTGAATTC--T-T-CAAATGAAATATGATTAT-CAA-----AATT-A--TTACCTTGTCAG-AT-GCGTGGATCAGNCAGNATAT---AC--------GATG----CGTCATCATAAAT-GAGC-T-AA-CCTAACTCGGT----ACAAAAAT-AAT-ATA-TGGATTCGGAGAAATATGTTATGGTACAT-GCAA-GAAAT-AATGTTTTTGAG-CAGC---TGAGAA--CTGCATATTAGAATTG--GTATTTTTTTNAC------T------C-CTCAT-----CTGATCATTCT-ATGT-AAAGAA-------------------AAAGTGGGGAGGGGG------CAACAA-ACGCCACTTATGC---C---AAAC-A-T-TTGTGC----CCCCCCCTTCC---AAAAAT----GAGGGAC-GTGCCCC--TCTG--GCACCCGCTCCC-CTTTTT-----GTCGNGCGCCCGTGTTACGCC-TAAGTAT-AGTTT--AATGTACAAA-TGTGNCATGTACACAATTGATATTC--GTTT--AAGTTAGAT-TTAAAACAATG-CAATTT-AATCCA-AATGCA----TAAATAATNCAAACGAAATGCTG-AATAGTT--------------ATAT--G-----GGCTGCTCTACAATCACTAAAT---ACAATTAC-ACAATTATACTTTTAATCGTANCTCCGTTAAANTTGAATCATCTACAATTGNTTANNANTTTCTGAGAGTCGATTAAAGTTTTAAATAAAA-CTCCAAACATACGGCGAAA----ATAA-AT-----------ACC--CTTCTT----TTGACGTGACGTCGCA--------------CA-A---GTAACGTCAAAATG-AANCAACG--------ATT--ATCTTAAACTATAC--TATGTTTAC--AT-ATGT-ATTATA-CATACGT-TAAT---GCTTCCTTACGAACATAC-GATAATCATTTTATGA-GAAANATAC----ACCCTATGAAAGAA-TTTTGA-GGAATATCATTTAA-TTTGAACGCGGGGCCGAAATTGGACCCAAACG
gi|1 : ----GGGGGGGGATC----CTC------C-----TCTCGCCATAATGGGCCTC--GATGTGAAT-AGAAGATACATCAAATTAAATT-----ATA-GTTCA--AAACTA--TTTT---------------------TA--ATT-TGCATATACGTCTATATTATAAGAATTGTCA-GTAAGAATCTCATTATCTTTTCTTTTAAAAAAA-AATAAGTGGGGTGTACAT--AAGATATCTCATATATTCA-CTCTTTATAC--TCG-CAATAGTGCATAATAATTGTTACATTGTACGTTCCGGAAATGGTTTTGCTGTTAAGAACATATGTGAC---TGTGTAAAAATAATTTGT------TACATGTACTAGTACATAAGACTTTTATATCAAACTTTTCCAATCTTGTCA-TTCTTATATT---ATCCCTCAGGTTTCAATTCTCAATTCT-ATTGT-ATA-AGGACTT----------CGGT-TT------------------TTTG-GG-CTGTT-TTTTTTTT----TTAA--AC-AT--TA-ATTCTGGA---ATGAAAATCTGTAATTTCAGTGATCTTTTTCTTAACTTTTTTTATCCAAACGTAGCAT-TACTTAGTA---G---G-GTGCTT-TG-GCTACAGCACGCCTATAGTAAGTAATTA-----ACT-------GCACTTTGAAAGAAAAAAAAAAATGAAGAAAGGT-TTATTAATT-TACACATAAATCCA-TG-CTTGGTTGGGGCT----AAA-AAAGTGA-GGGGGC-C----AAGTCCTATC-ATAAATTCTTGG-TTAAAAAGGAGGGAG--CAGCAAAATT----AA-AAAATTGGCA--GCAATA---A-AA-GATTCAGAAAATAGTA-GA-GGGCATAGACCTTAAACAGGCGATTCCTTCAAAC---TGTATCA-AACAC-GGGTGACGCA-TCCAATATAATATTTCAAA-GATT--CCGGCGCCGATTAGGTCC-GAGACTTTTTTTAGGTTCAAAGGTCCG--ATAGTTCGA--T---AG-CGCCAT----------------------AAGCTGTAA----A-AAAATTCTT--AAACTTTATTT-GACATTTCA-CGTT-TTGAGG--CGTGACGTTAGAT--AATT----AATTG-ATTCA-TGT-CAAATGAAAAATGATTATCCAA-----AATTCA--TTACATTGTCCGAAT-TCGTGGATCAGCAAGTAT-T---AA--------GATGGCATCGTAATCATAAAT-GAGC-TAAA-GCTAACTCATC----ACACAATTAAAT-ATA-TGGATTCGGAGAGA-ATGTTAT--TA-AT-GAAA-GAAAT-AG---TTTTGAG-CAGCTGATGAGAA--C-GCA-ATTAAAATGA--GTATTTTTTTTAA------CGTGGTAT-CTCAT-----CTGAT-ATT-T-ATGT-AAAGAA-------------------AAAGT-GAAAGGGGG------C-ACAA-CCGTCACTTATGCCCAC---AAACTA-T-TTGTG-----CCCCCCCTTCCAAAAAAAATAGAAGAGGGACGGTGCCCC--TCT-------CCGCTCCCACTTTTT-----GTCCTACGCCTGTGT-------TAAGTAT-AGTT----ATGTACAAAGTGGGCCATGTACACAA-TGATATTC--ATTT--AAGTTAGATCTTAAAA----G--AATTT-AATCCA-AAT-------TAAATAAGCTAAACGAAATGCTGAAATAGTT--------------ATATGGG-----GGCTGCTC-AC-ATCAT---AT---ACAATTACAACAATTAT
gi|10 : ggaatctttaaaaaataaaacgttatgggttaaccctcgggttttagccgttatatttgggcagcaagatgattttattttattcatttatctcaaggatgactttatctaaacgcatctaccactacttataaaaggggacgatgatgggcatcggcatgttaaaatgatggtaaatctaccgggcatttcaaaatatgtggggctcaagttccttggctgcatgtatacatgtgcctggtaaaaatttttgttttgcagtgaatttcttatagcatgtttctaatgtattagattatggtcctacgggttatttaaactaaaaaagtagtacaatgtataggcccataaccaagctataacgctattgttactattttctttcaataaatctgaacactgtgcataatgttaagtagagagcattgatttttcatacatacgttgcttttgcacaaaccacgaactcgtgcgatctgtaagggggggggggggtgtttcgcaattaccaaaatccttggctttgtgcgctaaggagattatactgatttaatgaagcagtctttgaaatattggacatacgattgttatatcttccattttcaaattacagtatgcataattatatgtgattataattgcaaatgctttcttcatactcaatatattcacatcatagcaacaagctgctgaaaatgcatcaatatgtcatacaaagtttactgtttaaaactatcatattttgccgttcatacgtggaaactaaccccggaaacgaatattagacagtaaaatagtaagatttattcttccaccgattgtccagctttgactaaaaatttaggatagagcgtttacaagagatacATTTTCTGAG-GTCAATTAAAGTTTTAAATAAAA-CTCCAAACATATGGCAAAA----ATAA--T-----------ACC--CTTCTT----TTGGC-TGACGTCGCAAATGTTGGACGTAGCA-AATAGTAAC-TCCAAATG-GATCAAGG--------ATT--ATCTTAAACTATAC--TATGTTTAC--AT-ATGT-ATTATA-TATACG--TAAT---GCTT-CTTA-GAACAT-T-GATAATCATTTTA--ATGAAAGATAC----A-CCTAT--AAGAA-TTTTGA-GG-ATATTATTTAA-TTTGAACGCGGGGCCG-AATTGGACCCAAAcacgcttacgcaggtct
gi|11 : aAAAA-TATAA-TGGG-TGTAAAG--AT-ATATT--ATATA--CAACTCTGTATACA-TCGGCGATAT-----AATA--CG--ACATCGGA--------AAATT-TTTTGCTGTT---AGT---TGTGACCAGTTTGT-AAAATAAT--GTGTTACAT-------GTA-----TAAGA-TT----ATCAC---TTTCAAATCTTAT-ACTTCTTCT--TTATAT-----AAGTTTCA-TTCTCAATCCT-ATTGTCATA-AC--TTTTTCAAGTAT-CGGT-TTTTGGTTGTTGTTGTGTTTTTTTTGG-TTTTTGTTTTTGTT----Tgaaaccg
gi|12 : CAGTGGCGTGCT--GGGCTC---AAATAA-GTTAGGGGCACATAATTAAG--ACATT-NNNNN--NNNNN-NNNNNNNNNNNNNNN--NN-NNNNNNNNNNNNN-NNNNNNNNNNNNNNNNNN---N-NNNNNN--NNNNNNNNNNN-NNNNNNNNNNNNNNNNNNNCGG---ATTCCT----------AT-TCAGAATGC-GG-TGAC-CA-TCCG----A-TATT-CA--------------------------CAG-GACTCTTT---AGTTCAAAGATCCA--ATAGTTCGA-AT---gtgttt
gi|14 : GTGCATTGCAAAGAAATTGATATCTTTGAC-TTGC---TGAGAA--CTACATATTAGAATTGA-GTATTTTTTTTACCA----T------CGTTTATTCTAACTGATTCTTCT-ATGTAAAAGAAATTTGTGTTTTTAAAAAACAAAGTGGGGGGGGGGGGTTTACAAGAA-ACACAACTTGTCC---C------C-A-TCCTG-GC----CCCCCgcttgataattaaga
gi|16 : ttgtC--TGTGTTCGTCAAT-TTGA-ATTATT-CATATGT--AAC---GCGTC-TTACGAATATGC-GATATTCATTT-ATGA--ATACATATGATTACTCTATGAAATAA-TTTTGA-AGAATATCATTTAC-TTTGGACGAGTGACC--AATT
gi|19 : TTA--AAGTTAGAT-T-AGAGCAATG-CAATAT-CATCCA-AATGCA------AATACTGCAAACGAAATGCTG-AATAAT
gi|2 : AGAAAGGGAGGAGGGGGGGGG--GGAACTCAGTGTATAATCCTATC-C-ATA-TGG-CCTCCGGATGTGAATT-GAAGATATATAAAG--AAATTAATA-AAAAGTTCACAAAACTAATTTCTATTTGTGTAAATACGTATAACTAGTATTATATATATACATCTAT--TAAAGGAATTGTCATGTAAGTAATAC-TTATCTTTTCTTTAAAAAAAATAATAA-TGGG-TGTA-ATTCAA-TTAT----TTTA--CA-TTCTGTATATGTTTA-CGGCATGGGAAAA-------------ATAT-------AGATT-TTT----------AA------TGAC---T-TACC-ACAT------T------T-------C--------AAATCTT----ATCAC---T------TCCTATGA----TAAT--T---AT-----AAGTTTCA-TCCTCAATCCT-ATTGTCATA-AA--CTTTTCAAG-AT-C-GT-GT------------------TTTCCGG-TTGTT-TTTTTATG----TTTC--ACTAT--TACATGT--GA---ATGAAA---T------TCA-TGATCTTTTGTT--ACTTT----ATCCAAACGTAGCATATACTTAGTACGTGTATGTGTGTCTGTTAGCTG-AACACGCC--------------A-----AC--------GCACATTT---------AAAAAATGAAGAAAAGT-GTAT--ATA-TACACGTAATTCCAGTGGCGTGTT--GGGCTAAAAAAA-AA-GTCA-GGGGACAC----AAA--CTATCAATAAA--CCTGGATTAAAAGGGGGGGGGGACA-CAAACTTT-AAAA-AAAATT-GCAAAGCAATAAGCA-AAAGATAGAGAAAATAAGA-GATGGACATAGACCTAACACAA-CGATTCC------------TATCA-AATAC-GG-TGAC-CA-TCC----TA-TATTTCAAA-GATCCTC----GCCGAT--ATTCCAGATACTTTTT---ACTTCAAAGGTCCG--ATAGTTCGA-AT---AGACGCCATTGATGTCGGAG-AA--------AAGCTGT----------AATTTTTTAAAACTTTATTT-GACATTTAA-CG----------------CTTTAGAT--AA-T----AATTGAAATCCAT-T-CAAATGAAATATGATAAT-AAAAAAAGAATA-A--TTACCTTGTCAG-AT-GCGTGGATAAAGCAGGATA----AC--------GATG----CATCATCATAAATAGAGCAT-AACCCTAACTCGGT----ACAAAAAT-ATC-ACA-TGAA-TCGGAGAAATATGTTATAATACAT-GCAA-GAAAT-AATGTTTTTGA--CAAC---TGAGAAC-CTGCATATTAGAATTG--GTATCCTTTTGAT------T------C-CTCAT-----CTGACCATTCT-ATGT-AAAAGA-------------------AAAATGGGGAGGGGG------CCACAA-AC-CCACTTATGC---CAAAAAACGA-T-TTGTGCCCGTCCCCCCCTTCC---AAAAAT----GAGAGAC-GTGCCCCCGTCTGAAACACCCGCCCCC-CCGTTT-----GTCGA-CGCCCGTGTTACATC-TGAGTATAAGTTT--AATGTAGAAA-TGTGTCATGTACACAATTGATATTCCAGTTTTAAAGTTAGAT-TTAAAACAATGCCAATTT-AATCCA-AATGTAATGCTGAATAGTTCAATCGAAGTAC----AT-GTA--------------ATAT--G-----GGCTGCTCTGCAATCACTAAAT---ACAATTAC-ACAATTAT--TTTTAATCGTAGCTCTGTTAAAA-TGAATCATCTACAATTGATTACAAATTTCTAAGAGTCGATTAAAGTCT--AATAAAACCTCCAAACATTCGGCGAAA----ATAA-AT-----------ACC--CTTCTT----TT-ACGTGACGTCACA--------------CAGA---GTAACGTCAAAATGCAAACAACG---------TT--ATCTTAAACTATAC--TATATTTAC--AT-ATGT-ATTATA-CATACGT-TAAT---GCTTCCTTACGAAAATAT-GATAATCATTTTATAACAAAACATAC----ACCTTAT-AAGGAATTTTTGA-GGAATATCATTTAA-TTTGAATGCGGGGCCAAAATTGGACCCAAACG
gi|20 : A-TTATGAAGGAATATCGTTTAA-TTTGAATGCGGCGCCGAAATTGGCCCCAAGCGa
gi|21 : -TTTGAACGCGGGGCCGAAATTGGACCCAAAcacaaagtcctt
gi|3 : T-TT------------------TTTTTGG-TTTTT-GTTTTGTT----TTTTTAAC-AT--TA-ATC---GA---ATGAAA-T-T------TCA-TGATCTTTT--T--A-TTT----ATCAAAGTGCA--AT-TACTTA--A---GTATGTGTGCTT-TT-GCTG-AAC-CGCT--------------ATAGATACAGTAATAAGCACTTCGAAA------AAAAAATGAAGAAAAGTTGTAT--TTAATACACATAAACCCAGTGGCGTG--------------AA-AA-GTGA-GGGGGCAC----AA---CTATC-ATAAAG-TTTGG-TTAAAAGGGGGAGC---CA-CA--CTTTAAAAACAAAATTGGCAAAGCA-TA---ATAAAGA---AGAAAATAAGAAGATGGGCATAGAC-TAACACAG-TGTTTTTTT---ACATATGTATCA-AATACTGG-TGAC-CACTCTA-TATA-TATTTCAAACGATCG-C----GCCGAT--AGTC-AGATACT-TCT---AGTTCAAAG-TCGA--ATAGTTGAA-AT---A--------TGA------AG-AAC-------AAGCTGTAATAAAA-AAAATTCTT---AACTTTATTTGGACATTTCA-CGTCATT--GG--AGTGAC-TTAGAT--AA-T----AATGAAATTC--T-T--AAATG-AATATGATTAT-CAA-----AATT-G--TTA-CTTGTC-G-ATGGCGTGGATCAGTCAGGATAT---ATAAGGGGGGGGGG----CG--ATTA-AAAT--AGC-T-AA-CCTAACTC-GT----GCAAAAAT-AATCATA-TGGATTCGAGGCAAT-TGTTATGGTACAT-GCAA-GAAAT-AATGTTTTTGAGACAGC---TGAGAAACCTGCATATTAAAATTGCAATATTTTTTTAACGTGGTAT------C-CTCAT-----CTGATCATTCTCATGT-AAAGAA-------------------AAAGTGGGGAGGGGG------CAGCAAGACGCCATTAATGC---C----AAC-ATT-TTGTGC----CCCCCCCTTCC----AAAAT----GAGGGAC-GTG--CC--TCTG--GCAC---CTCCC-TTTTTTTGGGGGGGGGGGGTCC---CTACGCCGTAAGTAT-AGTTTTAAATGTACAAA-TGTGACATGT-CACAATTGATATTC--ATTT--AAGTTAGAT-TT-AAACAATG-CAATTTAAATTCAGAATG------TAAATAAC---AACGAAATGCTG-AATAGTTAAATTGAAGTAATAATAT--ATATTTGGCTGCTCTACAATCACTAAATTAGACAA-TAT-ACAATTATACTTTTAATCGTACCTCCATTAAACTTGAAT-ATCTACAATTGCTTAACACTTTCTGAGAGATAATTAAAGTTTTAAATAAAA-AT-CAAACATACGGCG-AA----ATAAGAT-----------ACC--CTTCTT----T--ACGTGA-GTCGCA--------------CA-A---G-AACGTC-AAATG-CACCAACG--------ATT--ATCTT-AACTATAC--TATGTTTAC---T-ATGTAATTATA-CATACGTAAAAT---GCTT-CTTACTGACATATGGATAATGATTTTTTAT-GAAAACTA-------CCTATGAAGGAA-TTTTGA-GGAATATCATTTAATTTTGAAAGCGGGGC--GAATTGGACCCaggaccaagt
gi|4 : ttAGAAAGGG----GGGGGGGGTCCGAAACGC------CAAACACCTT-ACATccagacaggagcctttaag
gi|5 : ggacacctttaaaacctttaaagtaatgagttcccctagattattttacgtatataatatttgtagcgagatgaattttaatttattttattcacatttattcaagggctcagttcgtcgtttcaaacttatatttctacatagtacacagcacctaccactaccataacaaggggaaggagtgatcgcataaataaaaattatggtaaatctacgacattctcaaataatgtggggccaagttccctagctgttgctacaatgtacacagtaatatatatgtgcctgtaaaagtttttgttttgcagaattactttacatgttttaatgtattagattatggtcctatatttaaaagtacattaaaacaactaccgaacactattggttactattttcttcattaaaatcgtggaacacgtgcatgttcaagtagagcatgatatgttcattcaatttagtagcgtgtgcataaaccaccaacccgtgcggatctAGAAAGGG----GGGGGGGGGTCGAAACAC------CAAACATATC-CT-TA-TGG-CCTCCGGATGTGAATTAGAAGATATATAAAATT-----GATATATA-GTTCA--AA-CTA--TTTTATTTGCGTAAATACGTATA--TA--------------------T--TAAAGGAATTGTCATGTAAGAAATA-ATTATCTTTTCTTTAAGAAAAA-A-TAA-TGGG-TGTACAT--AA-ATAT---ATACA--CA-ATCTGTTTATG-TTA-CGACATCGGAAAATA--C------CTGTAT-------AGATT-TTTTGCTGTT--G--T---TATGAC---TGTGTCAAAATAAT--GT------T-------CTA-----TAAGACTT----ACCACA--TTTCAAATCTTATCACTTCCTA---T---AT-----CAGATCCA-TTTCCAATCCTGATTGTCCTATAC--CTTTTCAAG-ATCCGGTCTT------------------TTTTTGGTTTGCA-TTTTTGTTTATCTTTC--AC-ATTCTACATCT--GATCCATGGAATTTT------TCA-TGATCTTTT--T--AC-TT----ATCC-AACGTAGCAT----TTATTA---GTATGTGTGCCT-TT-GCTG-AACACGCC--------------A-----AC--------GCACTTTT-TA------AAAAAATGAAG-AAAGT-GTAT--ATA-TACACATtgttgcgctttgacaaatccagggagattatagtgttataatgaagccatctttgaaatattggaattacgattgttcgatatcttcttccattttcaaattacataattacggtgattataatacaatgctttctttaatactcaatttttactttacaatagatagtgttcaaagtaattatgaatatgtcacgtgatctttactttttttatacaacaagatgctggaaaatacatcaattgttatataaaaagtcttactgtttaaactatctttatttcgccggtcaatggaaaactggtcgaaaacgaatatagaagtttatttccacgatactctttctgactaaagacatttagaaag
gi|6 : ccaccaactcgtgtgggtctTTAAGTAAAA-CTCAAAACATATGTCAAAATAAGATGA-ATTTTAATTTTTAATCGTCTTCTTCATGTTGATGTGACGTTGCA--------------TA-------AACATCAAAATG-ACACAATGTTAATATAATTTAGTTTAAAACTATATAGTGTATTTAC--ATCATAT-ATTA
gi|6 : aaaaaatatagtgcacgcttgACTATA---TA-GTGTAC--AT-GTAT--TTACATCATATAT-TAGTAAAGCCTCTTT-CGAACATAC-GATTATCATTTTCTGA--AAAGATAC----ACCCAGTGAAAGAA-TTTTGA-GAAGCATCATCGAA-TTTAGACGCTGGGCCGAATTTGGCCCCGAACGgtaaagcctctnactatatagtgtacatgtatttacatcatatattagtaaagcctctttcgaacatacgattatcattttctgaaaagatacacccagtgaaagaattttgagaagcatcatcgaatttagacgctgggccgaatttggccccgaacgtaccaagtcct
gi|9 : aaaaaatatagtgcacgcttgttaagtaaaactcaaaacatatgtcaaaataagatgaattttaatttttaatcgtcttcttcatgttgatgtgacgttgcataaacatcaaaatgacacaatgttaatataatttagtttaaaactatatagtgtatttacatcatatattagtaaagcctctnGG-GGTGGGGATACGCCAAACACAA-CGATTCCT------------ATCA-AATAC-GA-TGAC-CA-TTCC-TATA-T-TTCCAAA-GG---------GTCGA---AGTCCAGCGACTCTCT---AGTTCAAAGGTCCGCCATAGTTCGACATTTCAG-CGTCATTGAC----CAGTGACTTAGATTAAACTGTAA----ATTGAATTCTT--taccaagtcct
gi|9 : TTC-GACATTTCAGCGTCATT--GACCAGTGACTT-AGATTAAA-CTGTAAATTGAATTC--T-TTCCTATGAAATATAATCAT-TAA-----AATT-AATTTACCTTGTCAG-AT-GCGT-----AAGCGATATATGTAAC--------GATG-------CATCATA-----------------AACTCGGTCAAAAGAAAAAT--GT-ATAGTAGATTCGGAGAAATATGTtcctatgaaatataatcattaaaattaatttaccttgtcagatgcgtaagcgatatatgtaacgatgcatcataaactcggtcaaaagaaaaatgtatagtagattcggagaaatatgtg
6 sequences could not be aligned to this reference sequence:
Unaligned ( gi|7 ): ATGGTACATCTACCGTGGCTTCTCAATAATGTAGTGCTCGAAGTTCGCCTGTGTTGCTAACACAAGTATACAATGTGCTGTAAAAGTTTTTGTTTTGCAGAATTAATTTACACGTTTTAATGTATTAGATTATGTTCCTACGTGTATTTAAAAACTAAAAGTACATGTATGAAAGTATAAGCTATTTGCTAACTGATTTTCTTCAATAAATCGTGGAACACGTGCATACATGTATCAAGTAGAGGCAATGATTTTCATACATACGGAGGCCTTTTTGCCAACCACCACTCGCTCGTGGCGTATCTAGAAGGGGGGGGGGG
Unaligned ( gi|8 ): AAAATCATAAAACAAACACATTGTCGAAAGAAAGTAGGGGTAACGTCCCCCTGTTGCTACGTGCCTATAGAACAATTCTTGTTTGTACAGTCACCTTACATGTGTTAATTAATACTTCATGTGTACTGGAACGTGTTCTATTTCATTGTCCTATCAAGAAATACATGTAGCCATTATTTACTATTTTCATCCACAAATGCTCATGAAGTAAAGCACGACTTTCACACATGGAAGTCATTTACGCACGGCCCACCCACCGTCCACTTATAGCATTAGTGGCATGTGCACAAATCACGTACGGATCTAAAAGGGGG
Unaligned ( gi|13 ): GGGCTCAATTCTTCGCTTTAAGTTTGCATTCTACAATCATTCACTACTACCTTAAAAAATAATAAACTGAACTTCGCATGTAAAATAATGAAGCAACCACATTGTTAAAAGAATGTGGGGCCCAAGTTTCCCTGTTGCTACGTGCCTATAGAACAATTCTTTGATTTGATTGTACAATCACCTTAATGCGTTAA
Unaligned ( gi|15 ): GTTTATACAACAAGCTGCTAGAAAATGCATGAATTGTCATATAGAGTTTTATTATTTAAAAAACTATCACATTTCGCCGGTCATTGGAAACTGGTCGAAAATGAATACTAGACAGGTAAATTGATGATTATTTCCACGATGATTCTTTGACTAAATTGGACATTTAGCAAGATA
Unaligned ( gi|17 ): GGTAAATCTACGACATTCTCAAAATAATGTGCGGCCAAGTTCCCTAGCTGTTGCTACATGTACAATATATATATGTGTCTGTAAA
Unaligned ( gi|18 ): ACAATTGTTTGATATATCCTTCTTCCATTTTCAATTTACATAATTATCAGTGATTAATTTAATCATTTTCTTCATACTCAATT
Alignments
lowQualScore : 111111111111111111111111111111
lowQualScore : 2222 22222222222222222 1 1 11 4444444444444 11 11 444444444444444444444444444 11 111 1 1 11 1 333 11 11 11 1 1 777777777777777777777777 1 555555555 111 11 77777777777777777777777777 2222 222 1 33333333333333 1 1 11111 1111 555555555555555555 1111 111 1 11 1 2222 111 5555555555 1 44444 2222 11 111 1 1 1 000000000000000000000000000000 4444444444 1 11 1 3333333333333 1 1 1 222222222 1 22 1 2222 1 11 1 22222 333 11 666666666666 2222 444444444444 111 111 11 111111 888888888888888 3333333333 11 1 1 333333333333 1 11 222222 2222222 11 22222 1111 1 1 555555555555555555555555555 333333333333 222222 11111 1 11 1 1 1 11 111 22 22 7777777777777777 22222 1 1 7777777777777777777 222222 1 444444444444 1 1 22222 222 2222 1 2222 2222 1 33333 11 2222222 1 222 1 111 11 1 11 1 1 444444444 1111 1 9999999999999999999999999 222 1 11 11 1 1 2222 55555555555555 11 2222222 88888888888888888888888 11 333333333 11 111 111 111 11 111 2222222 2222222 1
lowQualScore : 1111 77 33 1 99999999999999999 3 3 3 6 44 5555555555555 88 7 88 7 3 555555555555555555555555555 7 44 000 0 0 8 33 0 222 33 00 66 0 2 2 3 111111111111111111111111 0 3 111111111 0 777 8 22 3 44444444444444444444444444 2 1111 999 3 3 8 5 22222222222222 0 0 2 55555 3 4444 2 8 999999999999999999 3 8 8 7777 444 0 33 5 4444 777 5555555555 0 33333 55 1111 3 2 33 8 777 3 3 0 0 0 3 222222222222222222222222222222 5555555555 3 0 33 0 2 2 4444444444444 0 0 1 0 3 333333333 0 33 0 0000 0 5 77 0 5 5 5 11111 5 333 8 2 2 11 333333333333 0 8 8 8 8 8 5555 8 0 3 0 666666666666 666 0 5 6 444 3 11 88 777777 0 3 444444444444444 2222222222 33 7 0 0 333333333333 5 33 666666 3 8888888 3 1 00 55555 8888 8 9 0 0 2 2 1 1 999999999999999999999999999 3 3 111111111111 444444 99999 0 3 66 22 2 0 0 0 33 88 777 33 3 3 33 1 0000000000000000 55555 6 2 0 0 7777777777777777777 2 888888 9 0 6 444444444444 0 0 3 33333 333 7 8888 3 3333 8888 6 3 33333 33 6 3333333 3 555 3 1 7 7 999 33 0 3 99 22 0 0 333333333 2222 3 0 3 8888888888888888888888888 7 7 7 333 7 3 88 1 66 5 1 22 1 7 0 3 0 2 3 1111 11111111111111 33 4444444 2 2 00000000000000000000000 6 9 00 1 0 999999999 33 3 000 99 6 6 8 444 444 33 0 111 9999999 1 1111111 0 6 6 5 66
lowQualScore : .... .. .. . ................. . . . . .. ............. .. . .. . . ........................... . .. ... . . . .. . ... .. .. .. . . . . ........................ . . ......... . ... . .. . .......................... . .... ... . . . . .............. . . . ..... . .... . . .................. . . . .... ... . .. . .... ... .......... . ..... .. .... . . .. . ... . . . . . . .............................. .......... . . .. . . . ............. . . . . . ......... . .. . .... . . .. . . . . ..... . ... . . . .. ............ . . . . . . .... . . . . ............ ... . . . ... . .. .. ...... . . ............... .......... .. . . . ............ . .. ...... . ....... . . .. ..... .... . . . . . . . . ........................... . . ............ ...... ..... . . .. .. . . . . .. .. ... .. . . .. . ................ ..... . . . . ................... . ...... . . . ............ . . . ..... ... . .... . .... .... . . ..... .. . ....... . ... . . . . ... .. . . .. .. . . ......... .... . . . ......................... . . . ... . . .. . .. . . .. . . . . . . . .... .............. .. ....... . . ....................... . . .. . . ......... .. . ... .. . . . ... ... .. . ... ....... . ....... . . . . ..
lowQualScore : 2222 22 22 0 00000000000000000 2 3 3 7 77 3333333333333 33 3 33 3 7 333333333333333333333333333 3 00 888 0 0 8 88 0 888 88 22 55 0 8 5 5 888888888888888888888888 0 2 000000000 2 555 8 00 2 88888888888888888888888888 5 2222 222 2 0 8 0 55555555555555 0 0 5 88888 2 0000 5 0 000000000000000000 8 0 0 0000 000 0 88 0 5555 555 8888888888 0 88888 88 2222 2 5 22 8 555 2 2 0 0 0 2 000000000000000000000000000000 8888888888 2 0 88 0 5 5 8888888888888 0 0 0 0 2 555555555 0 88 0 0000 0 8 55 0 2 8 8 00000 8 222 0 8 2 22 222222222222 8 0 0 0 0 0 6666 0 8 8 8 666666666666 666 8 6 4 000 2 00 88 555555 2 2 222222222222222 8888888888 88 3 0 0 888888888888 5 88 000000 2 2222222 2 2 22 00000 5555 8 2 0 0 5 5 0 0 000000000000000000000000000 2 2 888888888888 888888 22222 0 2 55 22 5 0 0 0 55 88 555 88 2 2 88 0 2222222222222222 00000 5 5 0 0 5555555555555555555 5 888888 2 0 5 555555555555 0 0 2 88888 333 3 3333 3 3333 7777 7 3 33333 00 7 7777777 3 777 3 0 3 3 000 88 0 2 55 55 0 0 555555555 5555 2 0 2 3333333333333333333333333 3 3 3 333 3 3 00 0 55 0 0 00 0 3 7 2 0 5 2 2222 88888888888888 88 2222222 5 5 00000000000000000000000 5 2 88 0 2 555555555 88 2 222 22 7 7 0 888 000 22 8 444 4444444 0 0000000 0 7 7 7 66
consensus : AGAAAGGG----GGGGGGGGGTCGAAACNC------CAAACATNTC-CCATA-TGG-CCTCCGGATGTGAATTAGAAGATATATAAAATTAAATTGAT-A-ATAGTT--CAAAACTA--TTTTATTTGCGTAAATACGTATA--TA--ATT-TGCATATACGTCTAT--TAAAGGAATTGTCATGTAAGAAATACATTATCTTTTCTTTAAAAAAAA-AATAA-TGGG-TGTACAT--AA-ATATC--ATATA--CA-CTCTGTATACG-TCG-CGACATCGGAAAATA--CG--ACATCGTAT-------AGATT-TTTTGCTGTT--GAAT---TGTGAC---TGTGTCAAAATAAT--GT------T-------CTA-----TAAGACTT----ATCACA--TTTCAAATCTTATCACTTCTTAT--T---AT-----AAGTTTCA-TTCTCAATCCT-ATTGTCATA-AN--CTTTTCAAG-AT-CGGT-TT------------------TTTTTGG-TTGTT-TTTTTGTT----TTTC--AC-AT--TACATCC--GA---ATGAAA-TCT------TCA-TGATCTTTT-CT--ACTTT----ATCCAAACGTAGCAT-TACTTAGTA---GTATGTGTGCCT-TT-GCTG-AACACGCC--------------A-----AC--------GCACTTTNAAA------AAAAAATGAAGAAAAGT-GTAT--ATA-TACACATAAATCCAGTGGCGTGNT--GGGCT----AAA-AA-GTNA-GGGGGCAC----AAG--CTATC-ATAAA--CTTGG-TTAAAAGGGGGGGNG--CA-CAAACTTTAAAAA-AAAATTGGCAAAGCAATA---A-AAAGAT--AGAAAATAAGA-GATGGGCATAGACCTAACACAG-CGATTCCTT---AC---TGTATCA-AATAC-GG-TGAC-CA-TCCG-TATA-TATTTCAAA-GATC--C----GCCGAT--AGTCCAGAGACTCTTT---AGTTCAAAGGTCCG--ATAGTTCGA-AT---AG-CGCCATTGAC----G----AGAACAAGCTGTAA----A-AAAATTCTT--AAACTTTATTTG-ACATTTCA-CGTCATT--GG--AGTGACTTTAGAT--AA-T----AATTGAATTC--T-T-CAAATGAAATATGATTAT-CAA-----AATT-A--TTACCTTGTCAG-ATG-CGTGGATCAGNCAGNATAT---AC--------GATG----CGTCATCATAAAT-GAGC-T-AA-CCTAACTCGGT----ACAAAAAT-AAT-ATA-TGGATTCGGAGAAATATGTTATGGTACAT-GCAA-GAAAT-AATGTTTTTGAG-CAGC---TGAGAA--CTGCATATTAGAATTG--GTATTTTTTTNAC------T------C-CTCAT-----CTGATCATTCT-ATGT-AAAGAA-------------------AAAGTGGGGAGGGGG------CAACAA-ACGCCACTTATGC---C---AAAC-AT-TT-GTGC----CCCCCCCTTCC---AAAAAT----GAGGGAC-GTGCCCC--TCTG--GCACCCGCTCCC-CTTTTT-----GTCGNGCGCCCGTGTTACGCC-TAAGTAT-AGTTT--AATGTACAAA-TGTGNCATGTACACAATTGATATTC--GTTT--AAGTTAGAT-TTAAAACAATG-CAATTTAA-TCCA-AATGCA----TAAATAATNCAAACGAAATGCTG-AATAGTTA----------------TAT--G---GGCTGCTCTACAATCACTAAAT---ACAATTAC-ACAATTATACTTTTAATCGTANCTCCGTTAAANTTGAATCATCTACAATTGNTTANNANTTTCTGAGAGTCGATTAAAGTTTTAAATAAAA-CTCCAAACATACGGCGAAA----ATAA-AT-----------ACC--CTTCTT----TTGACGTGACGTCGCA--------------CA-A---GTAACGTCAAAATG-AANCAACG--------ATT--ATCTTAAACTATAC--TATGTTTAC--AT-ATGT-ATTATA-CATACGT-TAAT---GCTTCCTTACGAACATAC-GATAATCATTTTATGA-GAAANATAC----ACCCTATGAAAGAA-TTTTGA-GGAATATCATTTAA-TTTGAACGCGGGGCCGAAATTGGACCCAAACG
Reference ( family-613 ) : AGAAAGGG----GGGGGGGGGTCGAAACNC------CAAACATNTC-CCATA-TGG-CCTCCGGATGTGAATTAGAAGATATATAAAATTAAATTGAT-A-ATAGTT--CAAAACTA--TTTTATTTGCGTAAATACGTATA--TA--ATT-TGCATATACGTCTAT--TAAAGGAATTGTCATGTAAGAAATACATTATCTTTTCTTTAAAAAAAA-AATAA-TGGG-TGTACAT--AA-ATATC--ATATA--CA-CTCTGTATACG-TCG-CGACATCGGAAAATA--CG--ACATCGTAT-------AGATT-TTTTGCTGTT--GAAT---TGTGAC---TGTGTCAAAATAAT--GT------T-------CTA-----TAAGACTT----ATCACA--TTTCAAATCTTATCACTTCTTAT--T---AT-----AAGTTTCA-TTCTCAATCCT-ATTGTCATA-AN--CTTTTCAAG-AT-CGGT-TT------------------TTTTTGG-TTGTT-TTTTTGTT----TTTC--AC-AT--TACATCC--GA---ATGAAA-TCT------TCA-TGATCTTTT-CT--ACTTT----ATCCAAACGTAGCAT-TACTTAGTA---GTATGTGTGCCT-TT-GCTG-AACACGCC--------------A-----AC--------GCACTTTNAAA------AAAAAATGAAGAAAAGT-GTAT--ATA-TACACATAAATCCAGTGGCGTGNT--GGGCT----AAA-AA-GTNA-GGGGGCAC----AAG--CTATC-ATAAA--CTTGG-TTAAAAGGGGGGGNG--CA-CAAACTTTAAAAA-AAAATTGGCAAAGCAATA---A-AAAGAT--AGAAAATAAGA-GATGGGCATAGACCTAACACAG-CGATTCCTT---AC---TGTATCA-AATAC-GG-TGAC-CA-TCCG-TATA-TATTTCAAA-GATC--C----GCCGAT--AGTCCAGAGACTCTTT---AGTTCAAAGGTCCG--ATAGTTCGA-AT---AG-CGCCATTGAC---------AGAACAAGCTGTAA----A-AAAATTCTT--AAACTTTATTTG-ACATTTCA-CGTCATT--GG--AGTGACTTTAGAT--AA-T----AATTGAATTC--T-T-CAAATGAAATATGATTAT-CAA-----AATT-A--TTACCTTGTCAG-ATG-CGTGGATCAGNCAGNATAT---AC--------GATG----CGTCATCATAAAT-GAGC-T-AA-CCTAACTCGGT----ACAAAAAT-AAT-ATA-TGGATTCGGAGAAATATGTTATGGTACAT-GCAA-GAAAT-AATGTTTTTGAG-CAGC---TGAGAA--CTGCATATTAGAATTG--GTATTTTTTTNAC------T------C-CTCAT-----CTGATCATTCT-ATGT-AAAGAA-------------------AAAGTGGGGAGGGGG------CAACAA-ACGCCACTTATGC---C---AAAC-AT-TT-GTGC----CCCCCCCTTCC---AAAAAT----GAGGGAC-GTGCCCC--TCTG--GCACCCGCTCCC-CTTTTT-----GTCGNGCGCCCGTGTTACGCC-TAAGTAT-AGTTT--AATGTACAAA-TGTGNCATGTACACAATTGATATTC--GTTT--AAGTTAGAT-TTAAAACAATG-CAATTTAA-TCCA-AATGCA----TAAATAATNCAAACGAAATGCTG-AATAGTTA----------------TAT--G---GGCTGCTCTACAATCACTAAAT---ACAATTAC-ACAATTATACTTTTAATCGTANCTCCGTTAAANTTGAATCATCTACAATTGNTTANNANTTTCTGAGAGTCGATTAAAGTTTTAAATAAAA-CTCCAAACATACGGCGAAA----ATAA-AT-----------ACC--CTTCTT----TTGACGTGACGTCGCA--------------CA-A---GTAACGTCAAAATG-AANCAACG--------ATT--ATCTTAAACTATAC--TATGTTTAC--AT-ATGT-ATTATA-CATACGT-TAAT---GCTTCCTTACGAACATAC-GATAATCATTTTATGA-GAAANATAC----ACCCTATGAAAGAA-TTTTGA-GGAATATCATTTAA-TTTGAACGCGGGGCCGAAATTGGACCCAAACG
gi|1 : ----GGGGGGGGATC----CTC------C-----TCTCGCCATAATGGGCCTC--GATGTGAAT-AGAAGATACATCAAATTAAATT------ATAGTT--CAAAACTA--TTTT---------------------TA--ATT-TGCATATACGTCTATATTATAAGAATTGTCA-GTAAGAATCTCATTATCTTTTCTTTTAAAAAAA-AATAAGTGGGGTGTACAT--AAGATATCTCATATATTCA-CTCTTTATAC--TCG-CAATAGTGCATAATAATTGTTACATTGTACGTTCCGGAAATGGTTTTGCTGTTAAGAACATATGTGAC---TGTGTAAAAATAATTTGT------TACATGTACTAGTACATAAGACTTTTATATCAAACTTTTCCAATCTTGTCA-TTCTTATATT---ATCCCTCAGGTTTCAATTCTCAATTCT-ATTGT-ATA-AGGACTT----------CGGT-TT------------------TTTG-GG-CTGTT-TTTTTTTT----TTAA--AC-AT--TA-ATTCTGGA---ATGAAAATCTGTAATTTCAGTGATCTTTTTCTTAACTTTTTTTATCCAAACGTAGCAT-TACTTAGTA---G---G-GTGCTT-TG-GCTACAGCACGCCTATAGTAAGTAATTA-----ACT-------GCACTTTGAAAGAAAAAAAAAAATGAAGAAAGGT-TTATTAATT-TACACATAAATCCA-TG-CTTGGTTGGGGCT----AAA-AAAGTGA-GGGGGC-C----AAGTCCTATC-ATAAATTCTTGG-TTAAAAAGGAGGGAG--CAGCAAAATT----AA-AAAATTGGCA--GCAATA---A-AA-GATTCAGAAAATAGTA-GA-GGGCATAGACCTTAAACAGGCGATTCCTTCAAAC---TGTATCA-AACAC-GGGTGACGCA-TCCAATATAATATTTCAAA-GATT--CCGGCGCCGATTAGGTCC-GAGACTTTTTTTAGGTTCAAAGGTCCG--ATAGTTCGA--T---AG-CGCCAT------------------AAGCTGTAA----A-AAAATTCTT--AAACTTTATTTG-ACATTTCA-CGTT-TTGAGG--CGTGACGTTAGAT--AATT----AATTG-ATTCA-TGT-CAAATGAAAAATGATTATCCAA-----AATTCA--TTACATTGTCCGAATT-CGTGGATCAGCAAGTAT-T---AA--------GATGGCATCGTAATCATAAAT-GAGC-TAAA-GCTAACTCATC----ACACAATTAAAT-ATA-TGGATTCGGAGAGA-ATGTTAT--TA-AT-GAAA-GAAAT-AG---TTTTGAG-CAGCTGATGAGAA--C-GCA-ATTAAAATGA--GTATTTTTTTTAA------CGTGGTAT-CTCAT-----CTGAT-ATT-T-ATGT-AAAGAA-------------------AAAGT-GAAAGGGGG------C-ACAA-CCGTCACTTATGCCCAC---AAACTAT-TT-GTG-----CCCCCCCTTCCAAAAAAAATAGAAGAGGGACGGTGCCCC--TCT-------CCGCTCCCACTTTTT-----GTCCTACGCCTGTGT-------TAAGTAT-AGTT----ATGTACAAAGTGGGCCATGTACACAA-TGATATTC--ATTT--AAGTTAGATCTTAAAA----G--AATTTAA-TCCA-AAT-------TAAATAAGCTAAACGAAATGCTGAAATAGTTA----------------TATGGG---GGCTGCTC-AC-ATCAT---AT---ACAATTACAACAATTAT
gi|10 : ggaatctttaaaaaataaaacgttatgggttaaccctcgggttttagccgttatatttgggcagcaagatgattttattttattcatttatctcaaggatgactttatctaaacgcatctaccactacttataaaaggggacgatgatgggcatcggcatgttaaaatgatggtaaatctaccgggcatttcaaaatatgtggggctcaagttccttggctgcatgtatacatgtgcctggtaaaaatttttgttttgcagtgaatttcttatagcatgtttctaatgtattagattatggtcctacgggttatttaaactaaaaaagtagtacaatgtataggcccataaccaagctataacgctattgttactattttctttcaataaatctgaacactgtgcataatgttaagtagagagcattgatttttcatacatacgttgcttttgcacaaaccacgaactcgtgcgatctgtaagggggggggggggtgtttcgcaattaccaaaatccttggctttgtgcgctaaggagattatactgatttaatgaagcagtctttgaaatattggacatacgattgttatatcttccattttcaaattacagtatgcataattatatgtgattataattgcaaatgctttcttcatactcaatatattcacatcatagcaacaagctgctgaaaatgcatcaatatgtcatacaaagtttactgtttaaaactatcatattttgccgttcatacgtggaaactaaccccggaaacgaatattagacagtaaaatagtaagatttattcttccaccgattgtccagctttgactaaaaatttaggatagagcgtttacaagagatacATTTTCTGAG-GTCAATTAAAGTTTTAAATAAAA-CTCCAAACATATGGCAAAA----ATAA--T-----------ACC--CTTCTT----TTGGC-TGACGTCGCAAATGTTGGACGTAGCA-AATAGTAAC-TCCAAATG-GATCAAGG--------ATT--ATCTTAAACTATAC--TATGTTTAC--AT-ATGT-ATTATA-TATACG--TAAT---GCTT-CTTA-GAACAT-T-GATAATCATTTTA--ATGAAAGATAC----A-CCTAT--AAGAA-TTTTGA-GG-ATATTATTTAA-TTTGAACGCGGGGCCG-AATTGGACCCAAAcacgcttacgcaggtct
gi|11 : aAAAA-TATAA-TGGG-TGTAAAG--AT-ATATT--ATATA--CAACTCTGTATACA-TCGGCGATAT-----AATA--CG--ACATCGGA--------AAATT-TTTTGCTGTT---AGT---TGTGACCAGTTTGT-AAAATAAT--GTGTTACAT-------GTA-----TAAGA-TT----ATCAC---TTTCAAATCTTAT-ACTTCTTCT--TTATAT-----AAGTTTCA-TTCTCAATCCT-ATTGTCATA-AC--TTTTTCAAGTAT-CGGT-TTTTGGTTGTTGTTGTGTTTTTTTTGG-TTTTTGTTTTTGTT----Tgaaaccg
gi|12 : CAGTGGCGTGCT--GGGCTC---AAATAA-GTTAGGGGCACATAATTAAG--ACATT-NNNNN--NNNNN-NNNNNNNNNNNNNNN--NN-NNNNNNNNNNNNN-NNNNNNNNNNNNNNNNNN---N-NNNNNN--NNNNNNNNNNN-NNNNNNNNNNNNNNNNNNNCGG---ATTCCT----------AT-TCAGAATGC-GG-TGAC-CA-TCCG----A-TATT-CA--------------------------CAG-GACTCTTT---AGTTCAAAGATCCA--ATAGTTCGA-AT---gtgttt
gi|14 : GTGCATTGCAAAGAAATTGATATCTTTGAC-TTGC---TGAGAA--CTACATATTAGAATTGA-GTATTTTTTTTACCA----T------CGTTTATTCTAACTGATTCTTCT-ATGTAAAAGAAATTTGTGTTTTTAAAAAACAAAGTGGGGGGGGGGGGTTTACAAGAA-ACACAACTTGTCC---C------C-ATCCT-G-GC----CCCCCgcttgataattaaga
gi|16 : ttgtC--TGTGTTCGTCAAT-TTGA-ATTATT-CATATGT--AAC---GCGTC-TTACGAATATGC-GATATTCATTT-ATGA--ATACATATGATTACTCTATGAAATAA-TTTTGA-AGAATATCATTTAC-TTTGGACGAGTGACC--AATT
gi|19 : TTA--AAGTTAGAT-T-AGAGCAATG-CAATATCA-TCCA-AATGCA------AATACTGCAAACGAAATGCTG-AATAAT
gi|2 : AGAAAGGGAGGAGGGGGGGGG--GGAACTCAGTGTATAATCCTAT--CCATA-TGG-CCTCCGGATGTGAATT-GAAGATATATAAAG--AAATTAATAA-AAAGTTCACAAAACTAATTTCTATTTGTGTAAATACGTATAACTAGTATTATATATATACATCTAT--TAAAGGAATTGTCATGTAAGTAATAC-TTATCTTTTCTTTAAAAAAAATAATAA-TGGG-TGTA-ATTCAA-TTAT----TTTA--CA-TTCTGTATATGTTTA-CGGCATGGGAAAA-------------ATAT-------AGATT-TTT----------AA------TGAC---T-TACC-ACAT------T------T-------C--------AAATCTT----ATCAC---T------TCCTATGA----TAAT--T---AT-----AAGTTTCA-TCCTCAATCCT-ATTGTCATA-AA--CTTTTCAAG-AT-C-GT-GT------------------TTTCCGG-TTGTT-TTTTTATG----TTTC--ACTAT--TACATGT--GA---ATGAAA---T------TCA-TGATCTTTTGTT--ACTTT----ATCCAAACGTAGCATATACTTAGTACGTGTATGTGTGTCTGTTAGCTG-AACACGCC--------------A-----AC--------GCACATTT---------AAAAAATGAAGAAAAGT-GTAT--ATA-TACACGTAATTCCAGTGGCGTGTT--GGGCTAAAAAAA-AA-GTCA-GGGGACAC----AAA--CTATCAATAAA--CCTGGATTAAAAGGGGGGGGGGACA-CAAACTTT-AAAA-AAAATT-GCAAAGCAATAAGCA-AAAGATAGAGAAAATAAGA-GATGGACATAGACCTAACACAA-CGATTCC------------TATCA-AATAC-GG-TGAC-CA-TCC----TA-TATTTCAAA-GATCCTC----GCCGAT--ATTCCAGATACTTTTT---ACTTCAAAGGTCCG--ATAGTTCGA-AT---AGACGCCATTGATGTCGG----AGAA-AAGCTGT----------AATTTTTTAAAACTTTATTTG-ACATTTAA-CG----------------CTTTAGAT--AA-T----AATTGAAATCCAT-T-CAAATGAAATATGATAAT-AAAAAAAGAATA-A--TTACCTTGTCAG-ATG-CGTGGATAAAGCAGGATA----AC--------GATG----CATCATCATAAATAGAGCAT-AACCCTAACTCGGT----ACAAAAAT-ATC-ACA-TGAA-TCGGAGAAATATGTTATAATACAT-GCAA-GAAAT-AATGTTTTTGA--CAAC---TGAGAAC-CTGCATATTAGAATTG--GTATCCTTTTGAT------T------C-CTCAT-----CTGACCATTCT-ATGT-AAAAGA-------------------AAAATGGGGAGGGGG------CCACAA-AC-CCACTTATGC---CAAAAAACGAT-TT-GTGCCCGTCCCCCCCTTCC---AAAAAT----GAGAGAC-GTGCCCCCGTCTGAAACACCCGCCCCC-CCGTTT-----GTCGA-CGCCCGTGTTACATC-TGAGTATAAGTTT--AATGTAGAAA-TGTGTCATGTACACAATTGATATTCCAGTTTTAAAGTTAGAT-TTAAAACAATGCCAATTTAA-TCCA-AATGTAATGCTGAATAGTTCAATCGAAGTAC----AT-GTAA----------------TAT--G---GGCTGCTCTGCAATCACTAAAT---ACAATTAC-ACAATTAT--TTTTAATCGTAGCTCTGTTAAAA-TGAATCATCTACAATTGATTACAAATTTCTAAGAGTCGATTAAAGTCT--AATAAAACCTCCAAACATTCGGCGAAA----ATAA-AT-----------ACC--CTTCTT----TT-ACGTGACGTCACA--------------CAGA---GTAACGTCAAAATGCAAACAACG---------TT--ATCTTAAACTATAC--TATATTTAC--AT-ATGT-ATTATA-CATACGT-TAAT---GCTTCCTTACGAAAATAT-GATAATCATTTTATAACAAAACATAC----ACCTTAT-AAGGAATTTTTGA-GGAATATCATTTAA-TTTGAATGCGGGGCCAAAATTGGACCCAAACG
gi|20 : A-TTATGAAGGAATATCGTTTAA-TTTGAATGCGGCGCCGAAATTGGCCCCAAGCGa
gi|21 : -TTTGAACGCGGGGCCGAAATTGGACCCAAAcacaaagtcctt
gi|3 : T-TT------------------TTTTTGG-TTTTT-GTTTTGTT----TTTTTAAC-AT--TA-ATC---GA---ATGAAA-T-T------TCA-TGATCTTTT--T--A-TTT----ATCAAAGTGCA--AT-TACTTA--A---GTATGTGTGCTT-TT-GCTG-AAC-CGCT--------------ATAGATACAGTAATAAGCACTTCGAAA------AAAAAATGAAGAAAAGTTGTAT--TTAATACACATAAACCCAGTGGCGTG--------------AA-AA-GTGA-GGGGGCAC----AA---CTATC-ATAAAG-TTTGG-TTAAAAGGGGGAGC---CA-CA--CTTTAAAAACAAAATTGGCAAAGCA-TA---ATAAAGA---AGAAAATAAGAAGATGGGCATAGAC-TAACACAG-TGTTTTTTT---ACATATGTATCA-AATACTGG-TGAC-CACTCTA-TATA-TATTTCAAACGATCG-C----GCCGAT--AGTC-AGATACT-TCT---AGTTCAAAG-TCGA--ATAGTTGAA-AT---A--------TGA----------AGAACAAGCTGTAATAAAA-AAAATTCTT--AA-CTTTATTTGGACATTTCA-CGTCATT--GG--AGTGACTT-AGAT--AA-T----AATGAAATTC--T-T--AAATGAA-TATGATTAT-CAA-----AATT-G--TTAC-TTGTC-G-ATGGCGTGGATCAGTCAGGATAT---ATAAGGGGGGGGGG----CG--ATTA-AAAT--AGC-T-AA-CCTAACTCG-T----GCAAAAAT-AATCATA-TGGATTCGAGGCAAT-TGTTATGGTACAT-GCAA-GAAAT-AATGTTTTTGAGACAGC---TGAGAAACCTGCATATTAAAATTGCAATATTTTTTTAACGTGGTAT------C-CTCAT-----CTGATCATTCTCATGT-AAAGAA-------------------AAAGTGGGGAGGGGG------CAGCAAGACGCCATTAATGC---C---AA-C-AT-TTTGTGC----CCCCCCCTTCC---AAAA-T----GAGGGAC-GTGCC----TCTG--GCACC---TCCC-TTTTTTTGGGGGGGGGGGGTCC---CTACGCCGTAAGTAT-AGTTTTAAATGTACAAA-TGTGACATGT-CACAATTGATATTC--ATTT--AAGTTAGAT-TTAAA-CAATG-CAATTTAAATTCAGAATG------TAAATAAC---AACGAAATGCTG-AATAGTTAAATTGAAGTAATAATATAT--ATTTGGCTGCTCTACAATCACTAAATTAGACAAT-AT-ACAATTATACTTTTAATCGTACCTCCATTAAACTTGAAT-ATCTACAATTGCTTAACACTTTCTGAGAGATAATTAAAGTTTTAAATAAAA-AT-CAAACATACGGCG-AA----ATAAGAT-----------ACC--CTTCTT----T--ACGTGA-GTCGCA--------------CA-A---G-AACGTC-AAATG-CACCAACG--------ATT--ATCTT-AACTATAC--TATGTTTAC---T-ATGTAATTATA-CATACGTAAAAT---GCTT-CTTACTGACATATGGATAATGATTTTTTAT-GAAAACTA-------CCTATGAAGGAA-TTTTGA-GGAATATCATTTAATTTTGAAAGCGGGGC--GAATTGGACCCaggaccaagt
gi|4 : ttAGAAAGGG----GGGGGGGGTCCGAAACGC------CAAACACCTT-ACATccagacaggagcctttaag
gi|5 : ggacacctttaaaacctttaaagtaatgagttcccctagattattttacgtatataatatttgtagcgagatgaattttaatttattttattcacatttattcaagggctcagttcgtcgtttcaaacttatatttctacatagtacacagcacctaccactaccataacaaggggaaggagtgatcgcataaataaaaattatggtaaatctacgacattctcaaataatgtggggccaagttccctagctgttgctacaatgtacacagtaatatatatgtgcctgtaaaagtttttgttttgcagaattactttacatgttttaatgtattagattatggtcctatatttaaaagtacattaaaacaactaccgaacactattggttactattttcttcattaaaatcgtggaacacgtgcatgttcaagtagagcatgatatgttcattcaatttagtagcgtgtgcataaaccaccaacccgtgcggatctAGAAAGGG----GGGGGGGGGTCGAAACAC------CAAACATATC-CT-TA-TGG-CCTCCGGATGTGAATTAGAAGATATATAAAATT-----GAT-ATATAGTT--CAAA-CTA--TTTTATTTGCGTAAATACGTATA--TA--------------------T--TAAAGGAATTGTCATGTAAGAAATA-ATTATCTTTTCTTTAAGAAAAA-A-TAA-TGGG-TGTACAT--AA-ATAT---ATACA--CA-ATCTGTTTATG-TTA-CGACATCGGAAAATA--C------CTGTAT-------AGATT-TTTTGCTGTT--G--T---TATGAC---TGTGTCAAAATAAT--GT------T-------CTA-----TAAGACTT----ACCACA--TTTCAAATCTTATCACTTCCTA---T---AT-----CAGATCCA-TTTCCAATCCTGATTGTCCTATAC--CTTTTCAAG-ATCCGGTCTT------------------TTTTTGGTTTGCA-TTTTTGTTTATCTTTC--AC-ATTCTACATCT--GATCCATGGAATTTT------TCA-TGATCTTTT--T--AC-TT----ATCC-AACGTAGCAT----TTATTA---GTATGTGTGCCT-TT-GCTG-AACACGCC--------------A-----AC--------GCACTTTT-TA------AAAAAATGAAG-AAAGT-GTAT--ATA-TACACATtgttgcgctttgacaaatccagggagattatagtgttataatgaagccatctttgaaatattggaattacgattgttcgatatcttcttccattttcaaattacataattacggtgattataatacaatgctttctttaatactcaatttttactttacaatagatagtgttcaaagtaattatgaatatgtcacgtgatctttactttttttatacaacaagatgctggaaaatacatcaattgttatataaaaagtcttactgtttaaactatctttatttcgccggtcaatggaaaactggtcgaaaacgaatatagaagtttatttccacgatactctttctgactaaagacatttagaaag
gi|6 : ccaccaactcgtgtgggtctTTAAGTAAAA-CTCAAAACATATGTCAAAATAAGATGA-ATTTTAATTTTTAATCGTCTTCTTCATGTTGATGTGACGTTGCA--------------TA-------AACATCAAAATG-ACACAATGTTAATATAATTTAGTTTAAAACTATATAGTGTATTTAC--ATCATAT-ATTA
gi|6 : aaaaaatatagtgcacgcttgACTATA---TA-GTGTAC--AT-GTAT--TTACATCATATAT-TAGTAAAGCCTCTTT-CGAACATAC-GATTATCATTTTCTGA--AAAGATAC----ACCCAGTGAAAGAA-TTTTGA-GAAGCATCATCGAA-TTTAGACGCTGGGCCGAATTTGGCCCCGAACGgtaaagcctctnactatatagtgtacatgtatttacatcatatattagtaaagcctctttcgaacatacgattatcattttctgaaaagatacacccagtgaaagaattttgagaagcatcatcgaatttagacgctgggccgaatttggccccgaacgtaccaagtcct
gi|9 : aaaaaatatagtgcacgcttgttaagtaaaactcaaaacatatgtcaaaataagatgaattttaatttttaatcgtcttcttcatgttgatgtgacgttgcataaacatcaaaatgacacaatgttaatataatttagtttaaaactatatagtgtatttacatcatatattagtaaagcctctnGG-GGTGGGGATACGCCAAACACAA-CGATTCCT------------ATCA-AATAC-GA-TGAC-CA-TTCC-TATA-T-TTCCAAA-GG---------GTCGA---AGTCCAGCGACTCTCT---AGTTCAAAGGTCCGCCATAGTTCGACATTTCAG-CGTCATTGACCAGTGACTTAGATTAAACTGTAA----ATTGAATTCTT--taccaagtcct
gi|9 : TTCG-ACATTTCAGCGTCATT--GACCAGTGACTT-AGATTAAA-CTGTAAATTGAATTC--T-TTCCTATGAAATATAATCAT-TAA-----AATT-AATTTACCTTGTCAG-ATG-CGT-----AAGCGATATATGTAAC--------GATG-------CATCATA-----------------AACTCGGTCAAAAGAAAAAT--GT-ATAGTAGATTCGGAGAAATATGTtcctatgaaatataatcattaaaattaatttaccttgtcagatgcgtaagcgatatatgtaacgatgcatcataaactcggtcaaaagaaaaatgtatagtagattcggagaaatatgtg
6 sequences could not be aligned to this reference sequence:
Unaligned ( gi|7 ): ATGGTACATCTACCGTGGCTTCTCAATAATGTAGTGCTCGAAGTTCGCCTGTGTTGCTAACACAAGTATACAATGTGCTGTAAAAGTTTTTGTTTTGCAGAATTAATTTACACGTTTTAATGTATTAGATTATGTTCCTACGTGTATTTAAAAACTAAAAGTACATGTATGAAAGTATAAGCTATTTGCTAACTGATTTTCTTCAATAAATCGTGGAACACGTGCATACATGTATCAAGTAGAGGCAATGATTTTCATACATACGGAGGCCTTTTTGCCAACCACCACTCGCTCGTGGCGTATCTAGAAGGGGGGGGGGG
Unaligned ( gi|8 ): AAAATCATAAAACAAACACATTGTCGAAAGAAAGTAGGGGTAACGTCCCCCTGTTGCTACGTGCCTATAGAACAATTCTTGTTTGTACAGTCACCTTACATGTGTTAATTAATACTTCATGTGTACTGGAACGTGTTCTATTTCATTGTCCTATCAAGAAATACATGTAGCCATTATTTACTATTTTCATCCACAAATGCTCATGAAGTAAAGCACGACTTTCACACATGGAAGTCATTTACGCACGGCCCACCCACCGTCCACTTATAGCATTAGTGGCATGTGCACAAATCACGTACGGATCTAAAAGGGGG
Unaligned ( gi|13 ): GGGCTCAATTCTTCGCTTTAAGTTTGCATTCTACAATCATTCACTACTACCTTAAAAAATAATAAACTGAACTTCGCATGTAAAATAATGAAGCAACCACATTGTTAAAAGAATGTGGGGCCCAAGTTTCCCTGTTGCTACGTGCCTATAGAACAATTCTTTGATTTGATTGTACAATCACCTTAATGCGTTAA
Unaligned ( gi|15 ): GTTTATACAACAAGCTGCTAGAAAATGCATGAATTGTCATATAGAGTTTTATTATTTAAAAAACTATCACATTTCGCCGGTCATTGGAAACTGGTCGAAAATGAATACTAGACAGGTAAATTGATGATTATTTCCACGATGATTCTTTGACTAAATTGGACATTTAGCAAGATA
Unaligned ( gi|17 ): GGTAAATCTACGACATTCTCAAAATAATGTGCGGCCAAGTTCCCTAGCTGTTGCTACATGTACAATATATATATGTGTCTGTAAA
Unaligned ( gi|18 ): ACAATTGTTTGATATATCCTTCTTCCATTTTCAATTTACATAATTATCAGTGATTAATTTAATCATTTTCTTCATACTCAATT
Alignments
lowQualScore : 111111111111111111111111111111
lowQualScore : 2222 222222 1111 1 1 11 333333333333 1 11 11 444444444444444444444444444 11 111 1 1 11 1 333 11 11 11 1 1 777777777777777777777777 1 555555555 111 11 77777777777777777777777777 2222 222 1 33333333333333 1 1 11111 1111 555555555555555555 1111 111 1 11 1 2222 111 5555555555 1 44444 2222 11 111 1 1 1 000000000000000000000000000000 4444444444 1 11 1 3333333333333 1 1 1 222222222 1 22 1 2222 1 11 1 22222 333 11 666666666666 2222 444444444444 111 111 11 111111 8888888888888888888 3333333333 222 1 1 333333333333 11 222222 2222222 11 22222 1111 1 1 555555555555555555555555555 333333333333 2222 11111 1 11 1 1 1 11 111 22 22 7777777777777777 22222 1 1 7777777777777777777 222222 1 4444444444444444 22222 3333 2222 1 11 33333333 1 33333 11 2222222 1 222 1 111 11 1 11 1 1 444444444 1111 1 88888888888888888888888888 222 1 11 11 1 1 2222 55555555555555 11 2222222 88888888888888888888888 11 333333333 11 111 111 111 11 111 2222222 2222222 1
lowQualScore : 1111 77 33 1 888888 333 3 1 6666 3 3 6 44 222222222222 3 88 7 88 7 3 555555555555555555555555555 7 44 000 0 0 8 33 0 222 33 00 66 0 2 2 3 111111111111111111111111 0 3 111111111 0 777 8 22 3 44444444444444444444444444 2 1111 999 3 3 8 5 22222222222222 0 0 2 55555 3 4444 2 8 999999999999999999 3 8 8 7777 444 0 33 5 4444 777 5555555555 0 33333 55 1111 3 2 33 8 777 3 3 0 0 0 3 222222222222222222222222222222 5555555555 3 0 33 0 2 2 4444444444444 0 0 1 0 3 333333333 0 33 0 0000 0 5 77 0 5 5 5 11111 5 333 8 2 2 11 333333333333 0 8 8 8 8 8 5555 8 0 3 0 666666666666 666 0 5 6 444 3 11 88 777777 0 3 5555555555555555555 2222222222 111 0 0 333333333333 9 3 33 666666 3 8888888 3 1 00 55555 8888 2 9 0 0 2 2 1 1 999999999999999999999999999 3 3 111111111111 6 1111 99999 0 3 66 22 2 0 0 0 33 88 777 33 3 3 33 1 0000000000000000 55555 6 2 0 0 7777777777777777777 2 888888 9 0 6 6666666666666666 3 33333 0000 8888 3 6 88 11111111 3 33333 33 6 3333333 3 555 3 1 7 7 999 33 0 66 2 22 0 0 333333333 2222 3 0 3 99999999999999999999999999 7 7 7 333 7 3 88 1 66 5 1 22 1 7 0 3 0 2 3 1111 11111111111111 33 4444444 2 2 00000000000000000000000 6 9 00 1 0 999999999 33 3 000 99 6 6 8 444 444 33 0 111 9999999 1 1111111 0 6 6 5 66
lowQualScore : .... .. .. . ...... ... . . .... . . . .. ............ . .. . .. . . ........................... . .. ... . . . .. . ... .. .. .. . . . . ........................ . . ......... . ... . .. . .......................... . .... ... . . . . .............. . . . ..... . .... . . .................. . . . .... ... . .. . .... ... .......... . ..... .. .... . . .. . ... . . . . . . .............................. .......... . . .. . . . ............. . . . . . ......... . .. . .... . . .. . . . . ..... . ... . . . .. ............ . . . . . . .... . . . . ............ ... . . . ... . .. .. ...... . . ................... .......... ... . . ............ . . .. ...... . ....... . . .. ..... .... . . . . . . . . ........................... . . ............ . .... ..... . . .. .. . . . . .. .. ... .. . . .. . ................ ..... . . . . ................... . ...... . . . ................ . ..... .... .... . . .. ........ . ..... .. . ....... . ... . . . . ... .. . .. . .. . . ......... .... . . . .......................... . . . ... . . .. . .. . . .. . . . . . . . .... .............. .. ....... . . ....................... . . .. . . ......... .. . ... .. . . . ... ... .. . ... ....... . ....... . . . . ..
lowQualScore : 2222 22 22 0 888888 888 0 0 0000 3 3 7 77 000000000000 3 33 3 33 3 7 333333333333333333333333333 3 00 888 0 0 8 88 0 888 88 22 55 0 8 5 5 888888888888888888888888 0 2 000000000 2 555 8 00 2 88888888888888888888888888 5 2222 222 2 0 8 0 55555555555555 0 0 5 88888 2 0000 5 0 000000000000000000 8 0 0 0000 000 0 88 0 5555 555 8888888888 0 88888 88 2222 2 5 22 8 555 2 2 0 0 0 2 000000000000000000000000000000 8888888888 2 0 88 0 5 5 8888888888888 0 0 0 0 2 555555555 0 88 0 0000 0 8 55 0 2 8 8 00000 8 222 0 8 2 22 222222222222 8 0 0 0 0 0 6666 0 8 8 8 666666666666 666 8 6 4 000 2 00 88 555555 2 2 0000000000000000000 8888888888 111 0 0 888888888888 2 2 88 000000 2 2222222 2 2 22 00000 5555 5 2 0 0 5 5 0 0 000000000000000000000000000 2 2 888888888888 5 2222 22222 0 2 55 22 5 0 0 0 55 88 555 88 2 2 88 0 2222222222222222 00000 5 5 0 0 5555555555555555555 5 888888 2 0 5 5555555555555555 2 88888 7777 3333 3 7 33 00000000 3 33333 00 7 7777777 3 777 3 0 3 3 000 88 0 55 5 55 0 0 555555555 5555 2 0 2 33333333333333333333333333 3 3 3 333 3 3 00 0 55 0 0 00 0 3 7 2 0 5 2 2222 88888888888888 88 2222222 5 5 00000000000000000000000 5 2 88 0 2 555555555 88 2 222 22 7 7 0 888 000 22 8 444 4444444 0 0000000 0 7 7 7 66
consensus : AGAAAGGG----GGGGGGGGGTCGAAACNC------CAAACATNTC-CCATA-TGG-CCTCCGGATGTGAATTAGAAGATATATAAAATTAAATTGATA-ATA-GTTCA--AAACTA--TTTTATTTGCGTAAATACGTATA--TA--ATT-TGCATATACGTCTAT--TAAAGGAATTGTCATGTAAGAAATACATTATCTTTTCTTTAAAAAAAA-AATAA-TGGG-TGTACAT--AA-ATATC--ATATA--CA-CTCTGTATACG-TCG-CGACATCGGAAAATA--CG--ACATCGTAT-------AGATT-TTTTGCTGTT--GAAT---TGTGAC---TGTGTCAAAATAAT--GT------T-------CTA-----TAAGACTT----ATCACA--TTTCAAATCTTATCACTTCTTAT--T---AT-----AAGTTTCA-TTCTCAATCCT-ATTGTCATA-AN--CTTTTCAAG-AT-CGGT-TT------------------TTTTTGG-TTGTT-TTTTTGTT----TTTC--AC-AT--TACATCC--GA---ATGAAA-TCT------TCA-TGATCTTTT-CT--ACTTT----ATCCAAACGTAGCAT-TACTTAGTA---GTATGTGTGCCT-TT-GCTG-AACACGCC--------------A-----AC--------GCACTTTNAAA------AAAAAATGAAGAAAAGT-GTAT--ATA-TACACATAAATCCAGTGGCGTGNT--GGGCT----AAA-AA-GTNA-GGGGGCAC----AAG--CTATC-ATAAA--CTTGG-TTAAAAGGGGGGGNG--CA-CAAACTTTAAAAA-AAAATTGGCAAAGCAATA---A-AAAGAT--AGAAAATAAGA-GATGGGCATAGACCTAACACAG-CGATTCCTT---AC---TGTATCA-AATAC-GG-TGAC-CA-TCCG-TATA-TATTTCAAA-GATC--C----GCCGAT--AGTCCAGAGACTCTTT---AGTTCAAAGGTCCG--ATAGTTCGA-AT---AG-CGCCATTGAC-----AG-AAC-------AAGCTGTAA----A-AAAATTCTT--AAACTTTATTT-GACATTTCA-CGTCATT--GG--AGTGACTTTAGAT--AA-T----AATTGAATTC--T-T-CAAATGAAATATGATTAT-CAA-----AATT-A--TTACCTTGTCAG-AT-GCGTGGATCAGNCAGNATAT---AC--------GATG----CGTCATCATAAAT-GAGC-T-AA-CCTAACTCGGT----ACAAAAAT-AAT-ATA-TGGATTCGGAGAAATATGTTATGGTACAT-GCAA-GAAAT-AATGTTTTTGAG-CAGC---TGAGAA--CTGCATATTAGAATTG--GTATTTTTTTNAC------T------C-CTCAT-----CTGATCATTCT-ATGT-AAAGAA-------------------AAAGTGGGGAGGGGG------CAACAA-ACGCCACTTATGC---C---AAAC-A-T-TTGTGC----CCCCCCCTTCC---AAAAAT----GAGGGAC-GTGCCCC--TCTG--GCACCCGCTCCC-CTTTTT-----GTCGNGCGCCCGTGTTACGCC-TAAGTAT-AGTTT--AATGTACAAA-TGTGNCATGTACACAATTGATATTC--GTTT--AAGTTAGAT-TTAAAACAATG-CAATTT-AATCCA-AATGCA----TAAATAATNCAAACGAAATGCTG-AATAGTT--------------ATAT--G-----GGCTGCTCTACAATCACTAAAT---ACAATTAC-ACAATTATACTTTTAATCGTANCTCCGTTAAANTTGAATCATCTACAATTGNTTANNANTTTCTGAGAGTCGATTAAAGTTTTAAATAAAA-CTCCAAACATACGGCGAAA----ATAA-AT-----------ACC--CTTCTT----TTGACGTGACGTCGCA--------------CA-A---GTAACGTCAAAATG-AANCAACG--------ATT--ATCTTAAACTATAC--TATGTTTAC--AT-ATGT-ATTATA-CATACGT-TAAT---GCTTCCTTACGAACATAC-GATAATCATTTTATGA-GAAANATAC----ACCCTATGAAAGAA-TTTTGA-GGAATATCATTTAA-TTTGAACGCGGGGCCGAAATTGGACCCAAACG
Reference ( family-613 ) : AGAAAGGG----GGGGGGGGGTCGAAACNC------CAAACATNTC-CCATA-TGG-CCTCCGGATGTGAATTAGAAGATATATAAAATTAAATTGATA-ATA-GTTCA--AAACTA--TTTTATTTGCGTAAATACGTATA--TA--ATT-TGCATATACGTCTAT--TAAAGGAATTGTCATGTAAGAAATACATTATCTTTTCTTTAAAAAAAA-AATAA-TGGG-TGTACAT--AA-ATATC--ATATA--CA-CTCTGTATACG-TCG-CGACATCGGAAAATA--CG--ACATCGTAT-------AGATT-TTTTGCTGTT--GAAT---TGTGAC---TGTGTCAAAATAAT--GT------T-------CTA-----TAAGACTT----ATCACA--TTTCAAATCTTATCACTTCTTAT--T---AT-----AAGTTTCA-TTCTCAATCCT-ATTGTCATA-AN--CTTTTCAAG-AT-CGGT-TT------------------TTTTTGG-TTGTT-TTTTTGTT----TTTC--AC-AT--TACATCC--GA---ATGAAA-TCT------TCA-TGATCTTTT-CT--ACTTT----ATCCAAACGTAGCAT-TACTTAGTA---GTATGTGTGCCT-TT-GCTG-AACACGCC--------------A-----AC--------GCACTTTNAAA------AAAAAATGAAGAAAAGT-GTAT--ATA-TACACATAAATCCAGTGGCGTGNT--GGGCT----AAA-AA-GTNA-GGGGGCAC----AAG--CTATC-ATAAA--CTTGG-TTAAAAGGGGGGGNG--CA-CAAACTTTAAAAA-AAAATTGGCAAAGCAATA---A-AAAGAT--AGAAAATAAGA-GATGGGCATAGACCTAACACAG-CGATTCCTT---AC---TGTATCA-AATAC-GG-TGAC-CA-TCCG-TATA-TATTTCAAA-GATC--C----GCCGAT--AGTCCAGAGACTCTTT---AGTTCAAAGGTCCG--ATAGTTCGA-AT---AG-CGCCATTGAC----GAG-AAC-------AAGCTGTAA----A-AAAATTCTT--AAACTTTATTT-GACATTTCA-CGTCATT--GG--AGTGACTTTAGAT--AA-T----AATTGAATTC--T-T-CAAATGAAATATGATTAT-CAA-----AATT-A--TTACCTTGTCAG-AT-GCGTGGATCAGNCAGNATAT---AC--------GATG----CGTCATCATAAAT-GAGC-T-AA-CCTAACTCGGT----ACAAAAAT-AAT-ATA-TGGATTCGGAGAAATATGTTATGGTACAT-GCAA-GAAAT-AATGTTTTTGAG-CAGC---TGAGAA--CTGCATATTAGAATTG--GTATTTTTTTNAC------T------C-CTCAT-----CTGATCATTCT-ATGT-AAAGAA-------------------AAAGTGGGGAGGGGG------CAACAA-ACGCCACTTATGC---C---AAAC-A-T-TTGTGC----CCCCCCCTTCC---AAAAAT----GAGGGAC-GTGCCCC--TCTG--GCACCCGCTCCC-CTTTTT-----GTCGNGCGCCCGTGTTACGCC-TAAGTAT-AGTTT--AATGTACAAA-TGTGNCATGTACACAATTGATATTC--GTTT--AAGTTAGAT-TTAAAACAATG-CAATTT-AATCCA-AATGCA----TAAATAATNCAAACGAAATGCTG-AATAGTT--------------ATAT--G-----GGCTGCTCTACAATCACTAAAT---ACAATTAC-ACAATTATACTTTTAATCGTANCTCCGTTAAANTTGAATCATCTACAATTGNTTANNANTTTCTGAGAGTCGATTAAAGTTTTAAATAAAA-CTCCAAACATACGGCGAAA----ATAA-AT-----------ACC--CTTCTT----TTGACGTGACGTCGCA--------------CA-A---GTAACGTCAAAATG-AANCAACG--------ATT--ATCTTAAACTATAC--TATGTTTAC--AT-ATGT-ATTATA-CATACGT-TAAT---GCTTCCTTACGAACATAC-GATAATCATTTTATGA-GAAANATAC----ACCCTATGAAAGAA-TTTTGA-GGAATATCATTTAA-TTTGAACGCGGGGCCGAAATTGGACCCAAACG
gi|1 : ----GGGGGGGGATC----CTC------C-----TCTCGCCATAATGGGCCTC--GATGTGAAT-AGAAGATACATCAAATTAAATT-----ATA-GTTCA--AAACTA--TTTT---------------------TA--ATT-TGCATATACGTCTATATTATAAGAATTGTCA-GTAAGAATCTCATTATCTTTTCTTTTAAAAAAA-AATAAGTGGGGTGTACAT--AAGATATCTCATATATTCA-CTCTTTATAC--TCG-CAATAGTGCATAATAATTGTTACATTGTACGTTCCGGAAATGGTTTTGCTGTTAAGAACATATGTGAC---TGTGTAAAAATAATTTGT------TACATGTACTAGTACATAAGACTTTTATATCAAACTTTTCCAATCTTGTCA-TTCTTATATT---ATCCCTCAGGTTTCAATTCTCAATTCT-ATTGT-ATA-AGGACTT----------CGGT-TT------------------TTTG-GG-CTGTT-TTTTTTTT----TTAA--AC-AT--TA-ATTCTGGA---ATGAAAATCTGTAATTTCAGTGATCTTTTTCTTAACTTTTTTTATCCAAACGTAGCAT-TACTTAGTA---G---G-GTGCTT-TG-GCTACAGCACGCCTATAGTAAGTAATTA-----ACT-------GCACTTTGAAAGAAAAAAAAAAATGAAGAAAGGT-TTATTAATT-TACACATAAATCCA-TG-CTTGGTTGGGGCT----AAA-AAAGTGA-GGGGGC-C----AAGTCCTATC-ATAAATTCTTGG-TTAAAAAGGAGGGAG--CAGCAAAATT----AA-AAAATTGGCA--GCAATA---A-AA-GATTCAGAAAATAGTA-GA-GGGCATAGACCTTAAACAGGCGATTCCTTCAAAC---TGTATCA-AACAC-GGGTGACGCA-TCCAATATAATATTTCAAA-GATT--CCGGCGCCGATTAGGTCC-GAGACTTTTTTTAGGTTCAAAGGTCCG--ATAGTTCGA--T---AG-CGCCAT----------------------AAGCTGTAA----A-AAAATTCTT--AAACTTTATTT-GACATTTCA-CGTT-TTGAGG--CGTGACGTTAGAT--AATT----AATTG-ATTCA-TGT-CAAATGAAAAATGATTATCCAA-----AATTCA--TTACATTGTCCGAAT-TCGTGGATCAGCAAGTAT-T---AA--------GATGGCATCGTAATCATAAAT-GAGC-TAAA-GCTAACTCATC----ACACAATTAAAT-ATA-TGGATTCGGAGAGA-ATGTTAT--TA-AT-GAAA-GAAAT-AG---TTTTGAG-CAGCTGATGAGAA--C-GCA-ATTAAAATGA--GTATTTTTTTTAA------CGTGGTAT-CTCAT-----CTGAT-ATT-T-ATGT-AAAGAA-------------------AAAGT-GAAAGGGGG------C-ACAA-CCGTCACTTATGCCCAC---AAACTA-T-TTGTG-----CCCCCCCTTCCAAAAAAAATAGAAGAGGGACGGTGCCCC--TCT-------CCGCTCCCACTTTTT-----GTCCTACGCCTGTGT-------TAAGTAT-AGTT----ATGTACAAAGTGGGCCATGTACACAA-TGATATTC--ATTT--AAGTTAGATCTTAAAA----G--AATTT-AATCCA-AAT-------TAAATAAGCTAAACGAAATGCTGAAATAGTT--------------ATATGGG-----GGCTGCTC-AC-ATCAT---AT---ACAATTACAACAATTAT
gi|10 : ggaatctttaaaaaataaaacgttatgggttaaccctcgggttttagccgttatatttgggcagcaagatgattttattttattcatttatctcaaggatgactttatctaaacgcatctaccactacttataaaaggggacgatgatgggcatcggcatgttaaaatgatggtaaatctaccgggcatttcaaaatatgtggggctcaagttccttggctgcatgtatacatgtgcctggtaaaaatttttgttttgcagtgaatttcttatagcatgtttctaatgtattagattatggtcctacgggttatttaaactaaaaaagtagtacaatgtataggcccataaccaagctataacgctattgttactattttctttcaataaatctgaacactgtgcataatgttaagtagagagcattgatttttcatacatacgttgcttttgcacaaaccacgaactcgtgcgatctgtaagggggggggggggtgtttcgcaattaccaaaatccttggctttgtgcgctaaggagattatactgatttaatgaagcagtctttgaaatattggacatacgattgttatatcttccattttcaaattacagtatgcataattatatgtgattataattgcaaatgctttcttcatactcaatatattcacatcatagcaacaagctgctgaaaatgcatcaatatgtcatacaaagtttactgtttaaaactatcatattttgccgttcatacgtggaaactaaccccggaaacgaatattagacagtaaaatagtaagatttattcttccaccgattgtccagctttgactaaaaatttaggatagagcgtttacaagagatacATTTTCTGAG-GTCAATTAAAGTTTTAAATAAAA-CTCCAAACATATGGCAAAA----ATAA--T-----------ACC--CTTCTT----TTGGC-TGACGTCGCAAATGTTGGACGTAGCA-AATAGTAAC-TCCAAATG-GATCAAGG--------ATT--ATCTTAAACTATAC--TATGTTTAC--AT-ATGT-ATTATA-TATACG--TAAT---GCTT-CTTA-GAACAT-T-GATAATCATTTTA--ATGAAAGATAC----A-CCTAT--AAGAA-TTTTGA-GG-ATATTATTTAA-TTTGAACGCGGGGCCG-AATTGGACCCAAAcacgcttacgcaggtct
gi|11 : aAAAA-TATAA-TGGG-TGTAAAG--AT-ATATT--ATATA--CAACTCTGTATACA-TCGGCGATAT-----AATA--CG--ACATCGGA--------AAATT-TTTTGCTGTT---AGT---TGTGACCAGTTTGT-AAAATAAT--GTGTTACAT-------GTA-----TAAGA-TT----ATCAC---TTTCAAATCTTAT-ACTTCTTCT--TTATAT-----AAGTTTCA-TTCTCAATCCT-ATTGTCATA-AC--TTTTTCAAGTAT-CGGT-TTTTGGTTGTTGTTGTGTTTTTTTTGG-TTTTTGTTTTTGTT----Tgaaaccg
gi|12 : CAGTGGCGTGCT--GGGCTC---AAATAA-GTTAGGGGCACATAATTAAG--ACATT-NNNNN--NNNNN-NNNNNNNNNNNNNNN--NN-NNNNNNNNNNNNN-NNNNNNNNNNNNNNNNNN---N-NNNNNN--NNNNNNNNNNN-NNNNNNNNNNNNNNNNNNNCGG---ATTCCT----------AT-TCAGAATGC-GG-TGAC-CA-TCCG----A-TATT-CA--------------------------CAG-GACTCTTT---AGTTCAAAGATCCA--ATAGTTCGA-AT---gtgttt
gi|14 : GTGCATTGCAAAGAAATTGATATCTTTGAC-TTGC---TGAGAA--CTACATATTAGAATTGA-GTATTTTTTTTACCA----T------CGTTTATTCTAACTGATTCTTCT-ATGTAAAAGAAATTTGTGTTTTTAAAAAACAAAGTGGGGGGGGGGGGTTTACAAGAA-ACACAACTTGTCC---C------C-A-TCCTG-GC----CCCCCgcttgataattaaga
gi|16 : ttgtC--TGTGTTCGTCAAT-TTGA-ATTATT-CATATGT--AAC---GCGTC-TTACGAATATGC-GATATTCATTT-ATGA--ATACATATGATTACTCTATGAAATAA-TTTTGA-AGAATATCATTTAC-TTTGGACGAGTGACC--AATT
gi|19 : TTA--AAGTTAGAT-T-AGAGCAATG-CAATAT-CATCCA-AATGCA------AATACTGCAAACGAAATGCTG-AATAAT
gi|2 : AGAAAGGGAGGAGGGGGGGGG--GGAACTCAGTGTATAATCCTATC-C-ATA-TGG-CCTCCGGATGTGAATT-GAAGATATATAAAG--AAATTAATA-AAAAGTTCACAAAACTAATTTCTATTTGTGTAAATACGTATAACTAGTATTATATATATACATCTAT--TAAAGGAATTGTCATGTAAGTAATAC-TTATCTTTTCTTTAAAAAAAATAATAA-TGGG-TGTA-ATTCAA-TTAT----TTTA--CA-TTCTGTATATGTTTA-CGGCATGGGAAAA-------------ATAT-------AGATT-TTT----------AA------TGAC---T-TACC-ACAT------T------T-------C--------AAATCTT----ATCAC---T------TCCTATGA----TAAT--T---AT-----AAGTTTCA-TCCTCAATCCT-ATTGTCATA-AA--CTTTTCAAG-AT-C-GT-GT------------------TTTCCGG-TTGTT-TTTTTATG----TTTC--ACTAT--TACATGT--GA---ATGAAA---T------TCA-TGATCTTTTGTT--ACTTT----ATCCAAACGTAGCATATACTTAGTACGTGTATGTGTGTCTGTTAGCTG-AACACGCC--------------A-----AC--------GCACATTT---------AAAAAATGAAGAAAAGT-GTAT--ATA-TACACGTAATTCCAGTGGCGTGTT--GGGCTAAAAAAA-AA-GTCA-GGGGACAC----AAA--CTATCAATAAA--CCTGGATTAAAAGGGGGGGGGGACA-CAAACTTT-AAAA-AAAATT-GCAAAGCAATAAGCA-AAAGATAGAGAAAATAAGA-GATGGACATAGACCTAACACAA-CGATTCC------------TATCA-AATAC-GG-TGAC-CA-TCC----TA-TATTTCAAA-GATCCTC----GCCGAT--ATTCCAGATACTTTTT---ACTTCAAAGGTCCG--ATAGTTCGA-AT---AGACGCCATTGATGTCGGAG-AA--------AAGCTGT----------AATTTTTTAAAACTTTATTT-GACATTTAA-CG----------------CTTTAGAT--AA-T----AATTGAAATCCAT-T-CAAATGAAATATGATAAT-AAAAAAAGAATA-A--TTACCTTGTCAG-AT-GCGTGGATAAAGCAGGATA----AC--------GATG----CATCATCATAAATAGAGCAT-AACCCTAACTCGGT----ACAAAAAT-ATC-ACA-TGAA-TCGGAGAAATATGTTATAATACAT-GCAA-GAAAT-AATGTTTTTGA--CAAC---TGAGAAC-CTGCATATTAGAATTG--GTATCCTTTTGAT------T------C-CTCAT-----CTGACCATTCT-ATGT-AAAAGA-------------------AAAATGGGGAGGGGG------CCACAA-AC-CCACTTATGC---CAAAAAACGA-T-TTGTGCCCGTCCCCCCCTTCC---AAAAAT----GAGAGAC-GTGCCCCCGTCTGAAACACCCGCCCCC-CCGTTT-----GTCGA-CGCCCGTGTTACATC-TGAGTATAAGTTT--AATGTAGAAA-TGTGTCATGTACACAATTGATATTCCAGTTTTAAAGTTAGAT-TTAAAACAATGCCAATTT-AATCCA-AATGTAATGCTGAATAGTTCAATCGAAGTAC----AT-GTA--------------ATAT--G-----GGCTGCTCTGCAATCACTAAAT---ACAATTAC-ACAATTAT--TTTTAATCGTAGCTCTGTTAAAA-TGAATCATCTACAATTGATTACAAATTTCTAAGAGTCGATTAAAGTCT--AATAAAACCTCCAAACATTCGGCGAAA----ATAA-AT-----------ACC--CTTCTT----TT-ACGTGACGTCACA--------------CAGA---GTAACGTCAAAATGCAAACAACG---------TT--ATCTTAAACTATAC--TATATTTAC--AT-ATGT-ATTATA-CATACGT-TAAT---GCTTCCTTACGAAAATAT-GATAATCATTTTATAACAAAACATAC----ACCTTAT-AAGGAATTTTTGA-GGAATATCATTTAA-TTTGAATGCGGGGCCAAAATTGGACCCAAACG
gi|20 : A-TTATGAAGGAATATCGTTTAA-TTTGAATGCGGCGCCGAAATTGGCCCCAAGCGa
gi|21 : -TTTGAACGCGGGGCCGAAATTGGACCCAAAcacaaagtcctt
gi|3 : T-TT------------------TTTTTGG-TTTTT-GTTTTGTT----TTTTTAAC-AT--TA-ATC---GA---ATGAAA-T-T------TCA-TGATCTTTT--T--A-TTT----ATCAAAGTGCA--AT-TACTTA--A---GTATGTGTGCTT-TT-GCTG-AAC-CGCT--------------ATAGATACAGTAATAAGCACTTCGAAA------AAAAAATGAAGAAAAGTTGTAT--TTAATACACATAAACCCAGTGGCGTG--------------AA-AA-GTGA-GGGGGCAC----AA---CTATC-ATAAAG-TTTGG-TTAAAAGGGGGAGC---CA-CA--CTTTAAAAACAAAATTGGCAAAGCA-TA---ATAAAGA---AGAAAATAAGAAGATGGGCATAGAC-TAACACAG-TGTTTTTTT---ACATATGTATCA-AATACTGG-TGAC-CACTCTA-TATA-TATTTCAAACGATCG-C----GCCGAT--AGTC-AGATACT-TCT---AGTTCAAAG-TCGA--ATAGTTGAA-AT---A--------TGA------AG-AAC-------AAGCTGTAATAAAA-AAAATTCTT---AACTTTATTTGGACATTTCA-CGTCATT--GG--AGTGAC-TTAGAT--AA-T----AATGAAATTC--T-T--AAATG-AATATGATTAT-CAA-----AATT-G--TTA-CTTGTC-G-ATGGCGTGGATCAGTCAGGATAT---ATAAGGGGGGGGGG----CG--ATTA-AAAT--AGC-T-AA-CCTAACTC-GT----GCAAAAAT-AATCATA-TGGATTCGAGGCAAT-TGTTATGGTACAT-GCAA-GAAAT-AATGTTTTTGAGACAGC---TGAGAAACCTGCATATTAAAATTGCAATATTTTTTTAACGTGGTAT------C-CTCAT-----CTGATCATTCTCATGT-AAAGAA-------------------AAAGTGGGGAGGGGG------CAGCAAGACGCCATTAATGC---C----AAC-ATT-TTGTGC----CCCCCCCTTCC----AAAAT----GAGGGAC-GTG--CC--TCTG--GCAC---CTCCC-TTTTTTTGGGGGGGGGGGGTCC---CTACGCCGTAAGTAT-AGTTTTAAATGTACAAA-TGTGACATGT-CACAATTGATATTC--ATTT--AAGTTAGAT-TT-AAACAATG-CAATTTAAATTCAGAATG------TAAATAAC---AACGAAATGCTG-AATAGTTAAATTGAAGTAATAATAT--ATATTTGGCTGCTCTACAATCACTAAATTAGACAA-TAT-ACAATTATACTTTTAATCGTACCTCCATTAAACTTGAAT-ATCTACAATTGCTTAACACTTTCTGAGAGATAATTAAAGTTTTAAATAAAA-AT-CAAACATACGGCG-AA----ATAAGAT-----------ACC--CTTCTT----T--ACGTGA-GTCGCA--------------CA-A---G-AACGTC-AAATG-CACCAACG--------ATT--ATCTT-AACTATAC--TATGTTTAC---T-ATGTAATTATA-CATACGTAAAAT---GCTT-CTTACTGACATATGGATAATGATTTTTTAT-GAAAACTA-------CCTATGAAGGAA-TTTTGA-GGAATATCATTTAATTTTGAAAGCGGGGC--GAATTGGACCCaggaccaagt
gi|4 : ttAGAAAGGG----GGGGGGGGTCCGAAACGC------CAAACACCTT-ACATccagacaggagcctttaag
gi|5 : ggacacctttaaaacctttaaagtaatgagttcccctagattattttacgtatataatatttgtagcgagatgaattttaatttattttattcacatttattcaagggctcagttcgtcgtttcaaacttatatttctacatagtacacagcacctaccactaccataacaaggggaaggagtgatcgcataaataaaaattatggtaaatctacgacattctcaaataatgtggggccaagttccctagctgttgctacaatgtacacagtaatatatatgtgcctgtaaaagtttttgttttgcagaattactttacatgttttaatgtattagattatggtcctatatttaaaagtacattaaaacaactaccgaacactattggttactattttcttcattaaaatcgtggaacacgtgcatgttcaagtagagcatgatatgttcattcaatttagtagcgtgtgcataaaccaccaacccgtgcggatctAGAAAGGG----GGGGGGGGGTCGAAACAC------CAAACATATC-CT-TA-TGG-CCTCCGGATGTGAATTAGAAGATATATAAAATT-----GATATATA-GTTCA--AA-CTA--TTTTATTTGCGTAAATACGTATA--TA--------------------T--TAAAGGAATTGTCATGTAAGAAATA-ATTATCTTTTCTTTAAGAAAAA-A-TAA-TGGG-TGTACAT--AA-ATAT---ATACA--CA-ATCTGTTTATG-TTA-CGACATCGGAAAATA--C------CTGTAT-------AGATT-TTTTGCTGTT--G--T---TATGAC---TGTGTCAAAATAAT--GT------T-------CTA-----TAAGACTT----ACCACA--TTTCAAATCTTATCACTTCCTA---T---AT-----CAGATCCA-TTTCCAATCCTGATTGTCCTATAC--CTTTTCAAG-ATCCGGTCTT------------------TTTTTGGTTTGCA-TTTTTGTTTATCTTTC--AC-ATTCTACATCT--GATCCATGGAATTTT------TCA-TGATCTTTT--T--AC-TT----ATCC-AACGTAGCAT----TTATTA---GTATGTGTGCCT-TT-GCTG-AACACGCC--------------A-----AC--------GCACTTTT-TA------AAAAAATGAAG-AAAGT-GTAT--ATA-TACACATtgttgcgctttgacaaatccagggagattatagtgttataatgaagccatctttgaaatattggaattacgattgttcgatatcttcttccattttcaaattacataattacggtgattataatacaatgctttctttaatactcaatttttactttacaatagatagtgttcaaagtaattatgaatatgtcacgtgatctttactttttttatacaacaagatgctggaaaatacatcaattgttatataaaaagtcttactgtttaaactatctttatttcgccggtcaatggaaaactggtcgaaaacgaatatagaagtttatttccacgatactctttctgactaaagacatttagaaag
gi|6 : ccaccaactcgtgtgggtctTTAAGTAAAA-CTCAAAACATATGTCAAAATAAGATGA-ATTTTAATTTTTAATCGTCTTCTTCATGTTGATGTGACGTTGCA--------------TA-------AACATCAAAATG-ACACAATGTTAATATAATTTAGTTTAAAACTATATAGTGTATTTAC--ATCATAT-ATTA
gi|6 : aaaaaatatagtgcacgcttgACTATA---TA-GTGTAC--AT-GTAT--TTACATCATATAT-TAGTAAAGCCTCTTT-CGAACATAC-GATTATCATTTTCTGA--AAAGATAC----ACCCAGTGAAAGAA-TTTTGA-GAAGCATCATCGAA-TTTAGACGCTGGGCCGAATTTGGCCCCGAACGgtaaagcctctnactatatagtgtacatgtatttacatcatatattagtaaagcctctttcgaacatacgattatcattttctgaaaagatacacccagtgaaagaattttgagaagcatcatcgaatttagacgctgggccgaatttggccccgaacgtaccaagtcct
gi|9 : aaaaaatatagtgcacgcttgttaagtaaaactcaaaacatatgtcaaaataagatgaattttaatttttaatcgtcttcttcatgttgatgtgacgttgcataaacatcaaaatgacacaatgttaatataatttagtttaaaactatatagtgtatttacatcatatattagtaaagcctctnGG-GGTGGGGATACGCCAAACACAA-CGATTCCT------------ATCA-AATAC-GA-TGAC-CA-TTCC-TATA-T-TTCCAAA-GG---------GTCGA---AGTCCAGCGACTCTCT---AGTTCAAAGGTCCGCCATAGTTCGACATTTCAG-CGTCATTGAC----CAGTGACTTAGATTAAACTGTAA----ATTGAATTCTT--taccaagtcct
gi|9 : TTC-GACATTTCAGCGTCATT--GACCAGTGACTT-AGATTAAA-CTGTAAATTGAATTC--T-TTCCTATGAAATATAATCAT-TAA-----AATT-AATTTACCTTGTCAG-AT-GCGT-----AAGCGATATATGTAAC--------GATG-------CATCATA-----------------AACTCGGTCAAAAGAAAAAT--GT-ATAGTAGATTCGGAGAAATATGTtcctatgaaatataatcattaaaattaatttaccttgtcagatgcgtaagcgatatatgtaacgatgcatcataaactcggtcaaaagaaaaatgtatagtagattcggagaaatatgtg
6 sequences could not be aligned to this reference sequence:
Unaligned ( gi|7 ): ATGGTACATCTACCGTGGCTTCTCAATAATGTAGTGCTCGAAGTTCGCCTGTGTTGCTAACACAAGTATACAATGTGCTGTAAAAGTTTTTGTTTTGCAGAATTAATTTACACGTTTTAATGTATTAGATTATGTTCCTACGTGTATTTAAAAACTAAAAGTACATGTATGAAAGTATAAGCTATTTGCTAACTGATTTTCTTCAATAAATCGTGGAACACGTGCATACATGTATCAAGTAGAGGCAATGATTTTCATACATACGGAGGCCTTTTTGCCAACCACCACTCGCTCGTGGCGTATCTAGAAGGGGGGGGGGG
Unaligned ( gi|8 ): AAAATCATAAAACAAACACATTGTCGAAAGAAAGTAGGGGTAACGTCCCCCTGTTGCTACGTGCCTATAGAACAATTCTTGTTTGTACAGTCACCTTACATGTGTTAATTAATACTTCATGTGTACTGGAACGTGTTCTATTTCATTGTCCTATCAAGAAATACATGTAGCCATTATTTACTATTTTCATCCACAAATGCTCATGAAGTAAAGCACGACTTTCACACATGGAAGTCATTTACGCACGGCCCACCCACCGTCCACTTATAGCATTAGTGGCATGTGCACAAATCACGTACGGATCTAAAAGGGGG
Unaligned ( gi|13 ): GGGCTCAATTCTTCGCTTTAAGTTTGCATTCTACAATCATTCACTACTACCTTAAAAAATAATAAACTGAACTTCGCATGTAAAATAATGAAGCAACCACATTGTTAAAAGAATGTGGGGCCCAAGTTTCCCTGTTGCTACGTGCCTATAGAACAATTCTTTGATTTGATTGTACAATCACCTTAATGCGTTAA
Unaligned ( gi|15 ): GTTTATACAACAAGCTGCTAGAAAATGCATGAATTGTCATATAGAGTTTTATTATTTAAAAAACTATCACATTTCGCCGGTCATTGGAAACTGGTCGAAAATGAATACTAGACAGGTAAATTGATGATTATTTCCACGATGATTCTTTGACTAAATTGGACATTTAGCAAGATA
Unaligned ( gi|17 ): GGTAAATCTACGACATTCTCAAAATAATGTGCGGCCAAGTTCCCTAGCTGTTGCTACATGTACAATATATATATGTGTCTGTAAA
Unaligned ( gi|18 ): ACAATTGTTTGATATATCCTTCTTCCATTTTCAATTTACATAATTATCAGTGATTAATTTAATCATTTTCTTCATACTCAATT
Alignments
lowQualScore : 111111111111111111111111111111
lowQualScore : 2222 22222222222222222 1 1 11 4444444444444 11 11 444444444444444444444444444 11 111 1 1 11 1 333 11 11 11 1 1 777777777777777777777777 1 555555555 111 11 77777777777777777777777777 2222 222 1 33333333333333 1 1 11111 1111 555555555555555555 1111 111 1 11 1 2222 111 5555555555 1 44444 2222 11 111 1 1 1 000000000000000000000000000000 4444444444 1 11 1 3333333333333 1 1 1 222222222 1 22 1 2222 1 11 1 22222 333 11 666666666666 2222 444444444444 111 111 11 111111 888888888888888 3333333333 11 1 1 333333333333 1 11 222222 2222222 11 22222 1111 1 1 555555555555555555555555555 333333333333 222222 11111 1 11 1 1 1 11 111 22 22 7777777777777777 22222 1 1 7777777777777777777 222222 1 444444444444 1 1 22222 222 2222 1 2222 2222 1 33333 11 2222222 1 222 1 111 11 1 11 1 1 444444444 1111 1 9999999999999999999999999 222 1 11 11 1 1 2222 55555555555555 11 2222222 88888888888888888888888 11 333333333 11 111 111 111 11 111 2222222 2222222 1
lowQualScore : 1111 77 33 1 99999999999999999 3 3 3 6 44 5555555555555 88 7 88 7 3 555555555555555555555555555 7 44 000 0 0 8 33 0 222 33 00 66 0 2 2 3 111111111111111111111111 0 3 111111111 0 777 8 22 3 44444444444444444444444444 2 1111 999 3 3 8 5 22222222222222 0 0 2 55555 3 4444 2 8 999999999999999999 3 8 8 7777 444 0 33 5 4444 777 5555555555 0 33333 55 1111 3 2 33 8 777 3 3 0 0 0 3 222222222222222222222222222222 5555555555 3 0 33 0 2 2 4444444444444 0 0 1 0 3 333333333 0 33 0 0000 0 5 77 0 5 5 5 11111 5 333 8 2 2 11 333333333333 0 8 8 8 8 8 5555 8 0 3 0 666666666666 666 0 5 6 444 3 11 88 777777 0 3 444444444444444 2222222222 33 7 0 0 333333333333 5 33 666666 3 8888888 3 1 00 55555 8888 8 9 0 0 2 2 1 1 999999999999999999999999999 3 3 111111111111 444444 99999 0 3 66 22 2 0 0 0 33 88 777 33 3 3 33 1 0000000000000000 55555 6 2 0 0 7777777777777777777 2 888888 9 0 6 444444444444 0 0 3 33333 333 7 8888 3 3333 8888 6 3 33333 33 6 3333333 3 555 3 1 7 7 999 33 0 3 99 22 0 0 333333333 2222 3 0 3 8888888888888888888888888 7 7 7 333 7 3 88 1 66 5 1 22 1 7 0 3 0 2 3 1111 11111111111111 33 4444444 2 2 00000000000000000000000 6 9 00 1 0 999999999 33 3 000 99 6 6 8 444 444 33 0 111 9999999 1 1111111 0 6 6 5 66
lowQualScore : .... .. .. . ................. . . . . .. ............. .. . .. . . ........................... . .. ... . . . .. . ... .. .. .. . . . . ........................ . . ......... . ... . .. . .......................... . .... ... . . . . .............. . . . ..... . .... . . .................. . . . .... ... . .. . .... ... .......... . ..... .. .... . . .. . ... . . . . . . .............................. .......... . . .. . . . ............. . . . . . ......... . .. . .... . . .. . . . . ..... . ... . . . .. ............ . . . . . . .... . . . . ............ ... . . . ... . .. .. ...... . . ............... .......... .. . . . ............ . .. ...... . ....... . . .. ..... .... . . . . . . . . ........................... . . ............ ...... ..... . . .. .. . . . . .. .. ... .. . . .. . ................ ..... . . . . ................... . ...... . . . ............ . . . ..... ... . .... . .... .... . . ..... .. . ....... . ... . . . . ... .. . . .. .. . . ......... .... . . . ......................... . . . ... . . .. . .. . . .. . . . . . . . .... .............. .. ....... . . ....................... . . .. . . ......... .. . ... .. . . . ... ... .. . ... ....... . ....... . . . . ..
lowQualScore : 2222 22 22 0 00000000000000000 2 3 3 7 77 3333333333333 33 3 33 3 7 333333333333333333333333333 3 00 888 0 0 8 88 0 888 88 22 55 0 8 5 5 888888888888888888888888 0 2 000000000 2 555 8 00 2 88888888888888888888888888 5 2222 222 2 0 8 0 55555555555555 0 0 5 88888 2 0000 5 0 000000000000000000 8 0 0 0000 000 0 88 0 5555 555 8888888888 0 88888 88 2222 2 5 22 8 555 2 2 0 0 0 2 000000000000000000000000000000 8888888888 2 0 88 0 5 5 8888888888888 0 0 0 0 2 555555555 0 88 0 0000 0 8 55 0 2 8 8 00000 8 222 0 8 2 22 222222222222 8 0 0 0 0 0 6666 0 8 8 8 666666666666 666 8 6 4 000 2 00 88 555555 2 2 222222222222222 8888888888 88 3 0 0 888888888888 5 88 000000 2 2222222 2 2 22 00000 5555 8 2 0 0 5 5 0 0 000000000000000000000000000 2 2 888888888888 888888 22222 0 2 55 22 5 0 0 0 55 88 555 88 2 2 88 0 2222222222222222 00000 5 5 0 0 5555555555555555555 5 888888 2 0 5 555555555555 0 0 2 88888 333 3 3333 3 3333 7777 7 3 33333 00 7 7777777 3 777 3 0 3 3 000 88 0 2 55 55 0 0 555555555 5555 2 0 2 3333333333333333333333333 3 3 3 333 3 3 00 0 55 0 0 00 0 3 7 2 0 5 2 2222 88888888888888 88 2222222 5 5 00000000000000000000000 5 2 88 0 2 555555555 88 2 222 22 7 7 0 888 000 22 8 444 4444444 0 0000000 0 7 7 7 66
consensus : AGAAAGGG----GGGGGGGGGTCGAAACNC------CAAACATNTC-CCATA-TGG-CCTCCGGATGTGAATTAGAAGATATATAAAATTAAATTGAT-A-ATAGTT--CAAAACTA--TTTTATTTGCGTAAATACGTATA--TA--ATT-TGCATATACGTCTAT--TAAAGGAATTGTCATGTAAGAAATACATTATCTTTTCTTTAAAAAAAA-AATAA-TGGG-TGTACAT--AA-ATATC--ATATA--CA-CTCTGTATACG-TCG-CGACATCGGAAAATA--CG--ACATCGTAT-------AGATT-TTTTGCTGTT--GAAT---TGTGAC---TGTGTCAAAATAAT--GT------T-------CTA-----TAAGACTT----ATCACA--TTTCAAATCTTATCACTTCTTAT--T---AT-----AAGTTTCA-TTCTCAATCCT-ATTGTCATA-AN--CTTTTCAAG-AT-CGGT-TT------------------TTTTTGG-TTGTT-TTTTTGTT----TTTC--AC-AT--TACATCC--GA---ATGAAA-TCT------TCA-TGATCTTTT-CT--ACTTT----ATCCAAACGTAGCAT-TACTTAGTA---GTATGTGTGCCT-TT-GCTG-AACACGCC--------------A-----AC--------GCACTTTNAAA------AAAAAATGAAGAAAAGT-GTAT--ATA-TACACATAAATCCAGTGGCGTGNT--GGGCT----AAA-AA-GTNA-GGGGGCAC----AAG--CTATC-ATAAA--CTTGG-TTAAAAGGGGGGGNG--CA-CAAACTTTAAAAA-AAAATTGGCAAAGCAATA---A-AAAGAT--AGAAAATAAGA-GATGGGCATAGACCTAACACAG-CGATTCCTT---AC---TGTATCA-AATAC-GG-TGAC-CA-TCCG-TATA-TATTTCAAA-GATC--C----GCCGAT--AGTCCAGAGACTCTTT---AGTTCAAAGGTCCG--ATAGTTCGA-AT---AG-CGCCATTGAC----G----AGAACAAGCTGTAA----A-AAAATTCTT--AAACTTTATTTG-ACATTTCA-CGTCATT--GG--AGTGACTTTAGAT--AA-T----AATTGAATTC--T-T-CAAATGAAATATGATTAT-CAA-----AATT-A--TTACCTTGTCAG-ATG-CGTGGATCAGNCAGNATAT---AC--------GATG----CGTCATCATAAAT-GAGC-T-AA-CCTAACTCGGT----ACAAAAAT-AAT-ATA-TGGATTCGGAGAAATATGTTATGGTACAT-GCAA-GAAAT-AATGTTTTTGAG-CAGC---TGAGAA--CTGCATATTAGAATTG--GTATTTTTTTNAC------T------C-CTCAT-----CTGATCATTCT-ATGT-AAAGAA-------------------AAAGTGGGGAGGGGG------CAACAA-ACGCCACTTATGC---C---AAAC-AT-TT-GTGC----CCCCCCCTTCC---AAAAAT----GAGGGAC-GTGCCCC--TCTG--GCACCCGCTCCC-CTTTTT-----GTCGNGCGCCCGTGTTACGCC-TAAGTAT-AGTTT--AATGTACAAA-TGTGNCATGTACACAATTGATATTC--GTTT--AAGTTAGAT-TTAAAACAATG-CAATTTAA-TCCA-AATGCA----TAAATAATNCAAACGAAATGCTG-AATAGTTA----------------TAT--G---GGCTGCTCTACAATCACTAAAT---ACAATTAC-ACAATTATACTTTTAATCGTANCTCCGTTAAANTTGAATCATCTACAATTGNTTANNANTTTCTGAGAGTCGATTAAAGTTTTAAATAAAA-CTCCAAACATACGGCGAAA----ATAA-AT-----------ACC--CTTCTT----TTGACGTGACGTCGCA--------------CA-A---GTAACGTCAAAATG-AANCAACG--------ATT--ATCTTAAACTATAC--TATGTTTAC--AT-ATGT-ATTATA-CATACGT-TAAT---GCTTCCTTACGAACATAC-GATAATCATTTTATGA-GAAANATAC----ACCCTATGAAAGAA-TTTTGA-GGAATATCATTTAA-TTTGAACGCGGGGCCGAAATTGGACCCAAACG
Reference ( family-613 ) : AGAAAGGG----GGGGGGGGGTCGAAACNC------CAAACATNTC-CCATA-TGG-CCTCCGGATGTGAATTAGAAGATATATAAAATTAAATTGAT-A-ATAGTT--CAAAACTA--TTTTATTTGCGTAAATACGTATA--TA--ATT-TGCATATACGTCTAT--TAAAGGAATTGTCATGTAAGAAATACATTATCTTTTCTTTAAAAAAAA-AATAA-TGGG-TGTACAT--AA-ATATC--ATATA--CA-CTCTGTATACG-TCG-CGACATCGGAAAATA--CG--ACATCGTAT-------AGATT-TTTTGCTGTT--GAAT---TGTGAC---TGTGTCAAAATAAT--GT------T-------CTA-----TAAGACTT----ATCACA--TTTCAAATCTTATCACTTCTTAT--T---AT-----AAGTTTCA-TTCTCAATCCT-ATTGTCATA-AN--CTTTTCAAG-AT-CGGT-TT------------------TTTTTGG-TTGTT-TTTTTGTT----TTTC--AC-AT--TACATCC--GA---ATGAAA-TCT------TCA-TGATCTTTT-CT--ACTTT----ATCCAAACGTAGCAT-TACTTAGTA---GTATGTGTGCCT-TT-GCTG-AACACGCC--------------A-----AC--------GCACTTTNAAA------AAAAAATGAAGAAAAGT-GTAT--ATA-TACACATAAATCCAGTGGCGTGNT--GGGCT----AAA-AA-GTNA-GGGGGCAC----AAG--CTATC-ATAAA--CTTGG-TTAAAAGGGGGGGNG--CA-CAAACTTTAAAAA-AAAATTGGCAAAGCAATA---A-AAAGAT--AGAAAATAAGA-GATGGGCATAGACCTAACACAG-CGATTCCTT---AC---TGTATCA-AATAC-GG-TGAC-CA-TCCG-TATA-TATTTCAAA-GATC--C----GCCGAT--AGTCCAGAGACTCTTT---AGTTCAAAGGTCCG--ATAGTTCGA-AT---AG-CGCCATTGAC---------AGAACAAGCTGTAA----A-AAAATTCTT--AAACTTTATTTG-ACATTTCA-CGTCATT--GG--AGTGACTTTAGAT--AA-T----AATTGAATTC--T-T-CAAATGAAATATGATTAT-CAA-----AATT-A--TTACCTTGTCAG-ATG-CGTGGATCAGNCAGNATAT---AC--------GATG----CGTCATCATAAAT-GAGC-T-AA-CCTAACTCGGT----ACAAAAAT-AAT-ATA-TGGATTCGGAGAAATATGTTATGGTACAT-GCAA-GAAAT-AATGTTTTTGAG-CAGC---TGAGAA--CTGCATATTAGAATTG--GTATTTTTTTNAC------T------C-CTCAT-----CTGATCATTCT-ATGT-AAAGAA-------------------AAAGTGGGGAGGGGG------CAACAA-ACGCCACTTATGC---C---AAAC-AT-TT-GTGC----CCCCCCCTTCC---AAAAAT----GAGGGAC-GTGCCCC--TCTG--GCACCCGCTCCC-CTTTTT-----GTCGNGCGCCCGTGTTACGCC-TAAGTAT-AGTTT--AATGTACAAA-TGTGNCATGTACACAATTGATATTC--GTTT--AAGTTAGAT-TTAAAACAATG-CAATTTAA-TCCA-AATGCA----TAAATAATNCAAACGAAATGCTG-AATAGTTA----------------TAT--G---GGCTGCTCTACAATCACTAAAT---ACAATTAC-ACAATTATACTTTTAATCGTANCTCCGTTAAANTTGAATCATCTACAATTGNTTANNANTTTCTGAGAGTCGATTAAAGTTTTAAATAAAA-CTCCAAACATACGGCGAAA----ATAA-AT-----------ACC--CTTCTT----TTGACGTGACGTCGCA--------------CA-A---GTAACGTCAAAATG-AANCAACG--------ATT--ATCTTAAACTATAC--TATGTTTAC--AT-ATGT-ATTATA-CATACGT-TAAT---GCTTCCTTACGAACATAC-GATAATCATTTTATGA-GAAANATAC----ACCCTATGAAAGAA-TTTTGA-GGAATATCATTTAA-TTTGAACGCGGGGCCGAAATTGGACCCAAACG
gi|1 : ----GGGGGGGGATC----CTC------C-----TCTCGCCATAATGGGCCTC--GATGTGAAT-AGAAGATACATCAAATTAAATT------ATAGTT--CAAAACTA--TTTT---------------------TA--ATT-TGCATATACGTCTATATTATAAGAATTGTCA-GTAAGAATCTCATTATCTTTTCTTTTAAAAAAA-AATAAGTGGGGTGTACAT--AAGATATCTCATATATTCA-CTCTTTATAC--TCG-CAATAGTGCATAATAATTGTTACATTGTACGTTCCGGAAATGGTTTTGCTGTTAAGAACATATGTGAC---TGTGTAAAAATAATTTGT------TACATGTACTAGTACATAAGACTTTTATATCAAACTTTTCCAATCTTGTCA-TTCTTATATT---ATCCCTCAGGTTTCAATTCTCAATTCT-ATTGT-ATA-AGGACTT----------CGGT-TT------------------TTTG-GG-CTGTT-TTTTTTTT----TTAA--AC-AT--TA-ATTCTGGA---ATGAAAATCTGTAATTTCAGTGATCTTTTTCTTAACTTTTTTTATCCAAACGTAGCAT-TACTTAGTA---G---G-GTGCTT-TG-GCTACAGCACGCCTATAGTAAGTAATTA-----ACT-------GCACTTTGAAAGAAAAAAAAAAATGAAGAAAGGT-TTATTAATT-TACACATAAATCCA-TG-CTTGGTTGGGGCT----AAA-AAAGTGA-GGGGGC-C----AAGTCCTATC-ATAAATTCTTGG-TTAAAAAGGAGGGAG--CAGCAAAATT----AA-AAAATTGGCA--GCAATA---A-AA-GATTCAGAAAATAGTA-GA-GGGCATAGACCTTAAACAGGCGATTCCTTCAAAC---TGTATCA-AACAC-GGGTGACGCA-TCCAATATAATATTTCAAA-GATT--CCGGCGCCGATTAGGTCC-GAGACTTTTTTTAGGTTCAAAGGTCCG--ATAGTTCGA--T---AG-CGCCAT------------------AAGCTGTAA----A-AAAATTCTT--AAACTTTATTTG-ACATTTCA-CGTT-TTGAGG--CGTGACGTTAGAT--AATT----AATTG-ATTCA-TGT-CAAATGAAAAATGATTATCCAA-----AATTCA--TTACATTGTCCGAATT-CGTGGATCAGCAAGTAT-T---AA--------GATGGCATCGTAATCATAAAT-GAGC-TAAA-GCTAACTCATC----ACACAATTAAAT-ATA-TGGATTCGGAGAGA-ATGTTAT--TA-AT-GAAA-GAAAT-AG---TTTTGAG-CAGCTGATGAGAA--C-GCA-ATTAAAATGA--GTATTTTTTTTAA------CGTGGTAT-CTCAT-----CTGAT-ATT-T-ATGT-AAAGAA-------------------AAAGT-GAAAGGGGG------C-ACAA-CCGTCACTTATGCCCAC---AAACTAT-TT-GTG-----CCCCCCCTTCCAAAAAAAATAGAAGAGGGACGGTGCCCC--TCT-------CCGCTCCCACTTTTT-----GTCCTACGCCTGTGT-------TAAGTAT-AGTT----ATGTACAAAGTGGGCCATGTACACAA-TGATATTC--ATTT--AAGTTAGATCTTAAAA----G--AATTTAA-TCCA-AAT-------TAAATAAGCTAAACGAAATGCTGAAATAGTTA----------------TATGGG---GGCTGCTC-AC-ATCAT---AT---ACAATTACAACAATTAT
gi|10 : ggaatctttaaaaaataaaacgttatgggttaaccctcgggttttagccgttatatttgggcagcaagatgattttattttattcatttatctcaaggatgactttatctaaacgcatctaccactacttataaaaggggacgatgatgggcatcggcatgttaaaatgatggtaaatctaccgggcatttcaaaatatgtggggctcaagttccttggctgcatgtatacatgtgcctggtaaaaatttttgttttgcagtgaatttcttatagcatgtttctaatgtattagattatggtcctacgggttatttaaactaaaaaagtagtacaatgtataggcccataaccaagctataacgctattgttactattttctttcaataaatctgaacactgtgcataatgttaagtagagagcattgatttttcatacatacgttgcttttgcacaaaccacgaactcgtgcgatctgtaagggggggggggggtgtttcgcaattaccaaaatccttggctttgtgcgctaaggagattatactgatttaatgaagcagtctttgaaatattggacatacgattgttatatcttccattttcaaattacagtatgcataattatatgtgattataattgcaaatgctttcttcatactcaatatattcacatcatagcaacaagctgctgaaaatgcatcaatatgtcatacaaagtttactgtttaaaactatcatattttgccgttcatacgtggaaactaaccccggaaacgaatattagacagtaaaatagtaagatttattcttccaccgattgtccagctttgactaaaaatttaggatagagcgtttacaagagatacATTTTCTGAG-GTCAATTAAAGTTTTAAATAAAA-CTCCAAACATATGGCAAAA----ATAA--T-----------ACC--CTTCTT----TTGGC-TGACGTCGCAAATGTTGGACGTAGCA-AATAGTAAC-TCCAAATG-GATCAAGG--------ATT--ATCTTAAACTATAC--TATGTTTAC--AT-ATGT-ATTATA-TATACG--TAAT---GCTT-CTTA-GAACAT-T-GATAATCATTTTA--ATGAAAGATAC----A-CCTAT--AAGAA-TTTTGA-GG-ATATTATTTAA-TTTGAACGCGGGGCCG-AATTGGACCCAAAcacgcttacgcaggtct
gi|11 : aAAAA-TATAA-TGGG-TGTAAAG--AT-ATATT--ATATA--CAACTCTGTATACA-TCGGCGATAT-----AATA--CG--ACATCGGA--------AAATT-TTTTGCTGTT---AGT---TGTGACCAGTTTGT-AAAATAAT--GTGTTACAT-------GTA-----TAAGA-TT----ATCAC---TTTCAAATCTTAT-ACTTCTTCT--TTATAT-----AAGTTTCA-TTCTCAATCCT-ATTGTCATA-AC--TTTTTCAAGTAT-CGGT-TTTTGGTTGTTGTTGTGTTTTTTTTGG-TTTTTGTTTTTGTT----Tgaaaccg
gi|12 : CAGTGGCGTGCT--GGGCTC---AAATAA-GTTAGGGGCACATAATTAAG--ACATT-NNNNN--NNNNN-NNNNNNNNNNNNNNN--NN-NNNNNNNNNNNNN-NNNNNNNNNNNNNNNNNN---N-NNNNNN--NNNNNNNNNNN-NNNNNNNNNNNNNNNNNNNCGG---ATTCCT----------AT-TCAGAATGC-GG-TGAC-CA-TCCG----A-TATT-CA--------------------------CAG-GACTCTTT---AGTTCAAAGATCCA--ATAGTTCGA-AT---gtgttt
gi|14 : GTGCATTGCAAAGAAATTGATATCTTTGAC-TTGC---TGAGAA--CTACATATTAGAATTGA-GTATTTTTTTTACCA----T------CGTTTATTCTAACTGATTCTTCT-ATGTAAAAGAAATTTGTGTTTTTAAAAAACAAAGTGGGGGGGGGGGGTTTACAAGAA-ACACAACTTGTCC---C------C-ATCCT-G-GC----CCCCCgcttgataattaaga
gi|16 : ttgtC--TGTGTTCGTCAAT-TTGA-ATTATT-CATATGT--AAC---GCGTC-TTACGAATATGC-GATATTCATTT-ATGA--ATACATATGATTACTCTATGAAATAA-TTTTGA-AGAATATCATTTAC-TTTGGACGAGTGACC--AATT
gi|19 : TTA--AAGTTAGAT-T-AGAGCAATG-CAATATCA-TCCA-AATGCA------AATACTGCAAACGAAATGCTG-AATAAT
gi|2 : AGAAAGGGAGGAGGGGGGGGG--GGAACTCAGTGTATAATCCTAT--CCATA-TGG-CCTCCGGATGTGAATT-GAAGATATATAAAG--AAATTAATAA-AAAGTTCACAAAACTAATTTCTATTTGTGTAAATACGTATAACTAGTATTATATATATACATCTAT--TAAAGGAATTGTCATGTAAGTAATAC-TTATCTTTTCTTTAAAAAAAATAATAA-TGGG-TGTA-ATTCAA-TTAT----TTTA--CA-TTCTGTATATGTTTA-CGGCATGGGAAAA-------------ATAT-------AGATT-TTT----------AA------TGAC---T-TACC-ACAT------T------T-------C--------AAATCTT----ATCAC---T------TCCTATGA----TAAT--T---AT-----AAGTTTCA-TCCTCAATCCT-ATTGTCATA-AA--CTTTTCAAG-AT-C-GT-GT------------------TTTCCGG-TTGTT-TTTTTATG----TTTC--ACTAT--TACATGT--GA---ATGAAA---T------TCA-TGATCTTTTGTT--ACTTT----ATCCAAACGTAGCATATACTTAGTACGTGTATGTGTGTCTGTTAGCTG-AACACGCC--------------A-----AC--------GCACATTT---------AAAAAATGAAGAAAAGT-GTAT--ATA-TACACGTAATTCCAGTGGCGTGTT--GGGCTAAAAAAA-AA-GTCA-GGGGACAC----AAA--CTATCAATAAA--CCTGGATTAAAAGGGGGGGGGGACA-CAAACTTT-AAAA-AAAATT-GCAAAGCAATAAGCA-AAAGATAGAGAAAATAAGA-GATGGACATAGACCTAACACAA-CGATTCC------------TATCA-AATAC-GG-TGAC-CA-TCC----TA-TATTTCAAA-GATCCTC----GCCGAT--ATTCCAGATACTTTTT---ACTTCAAAGGTCCG--ATAGTTCGA-AT---AGACGCCATTGATGTCGG----AGAA-AAGCTGT----------AATTTTTTAAAACTTTATTTG-ACATTTAA-CG----------------CTTTAGAT--AA-T----AATTGAAATCCAT-T-CAAATGAAATATGATAAT-AAAAAAAGAATA-A--TTACCTTGTCAG-ATG-CGTGGATAAAGCAGGATA----AC--------GATG----CATCATCATAAATAGAGCAT-AACCCTAACTCGGT----ACAAAAAT-ATC-ACA-TGAA-TCGGAGAAATATGTTATAATACAT-GCAA-GAAAT-AATGTTTTTGA--CAAC---TGAGAAC-CTGCATATTAGAATTG--GTATCCTTTTGAT------T------C-CTCAT-----CTGACCATTCT-ATGT-AAAAGA-------------------AAAATGGGGAGGGGG------CCACAA-AC-CCACTTATGC---CAAAAAACGAT-TT-GTGCCCGTCCCCCCCTTCC---AAAAAT----GAGAGAC-GTGCCCCCGTCTGAAACACCCGCCCCC-CCGTTT-----GTCGA-CGCCCGTGTTACATC-TGAGTATAAGTTT--AATGTAGAAA-TGTGTCATGTACACAATTGATATTCCAGTTTTAAAGTTAGAT-TTAAAACAATGCCAATTTAA-TCCA-AATGTAATGCTGAATAGTTCAATCGAAGTAC----AT-GTAA----------------TAT--G---GGCTGCTCTGCAATCACTAAAT---ACAATTAC-ACAATTAT--TTTTAATCGTAGCTCTGTTAAAA-TGAATCATCTACAATTGATTACAAATTTCTAAGAGTCGATTAAAGTCT--AATAAAACCTCCAAACATTCGGCGAAA----ATAA-AT-----------ACC--CTTCTT----TT-ACGTGACGTCACA--------------CAGA---GTAACGTCAAAATGCAAACAACG---------TT--ATCTTAAACTATAC--TATATTTAC--AT-ATGT-ATTATA-CATACGT-TAAT---GCTTCCTTACGAAAATAT-GATAATCATTTTATAACAAAACATAC----ACCTTAT-AAGGAATTTTTGA-GGAATATCATTTAA-TTTGAATGCGGGGCCAAAATTGGACCCAAACG
gi|20 : A-TTATGAAGGAATATCGTTTAA-TTTGAATGCGGCGCCGAAATTGGCCCCAAGCGa
gi|21 : -TTTGAACGCGGGGCCGAAATTGGACCCAAAcacaaagtcctt
gi|3 : T-TT------------------TTTTTGG-TTTTT-GTTTTGTT----TTTTTAAC-AT--TA-ATC---GA---ATGAAA-T-T------TCA-TGATCTTTT--T--A-TTT----ATCAAAGTGCA--AT-TACTTA--A---GTATGTGTGCTT-TT-GCTG-AAC-CGCT--------------ATAGATACAGTAATAAGCACTTCGAAA------AAAAAATGAAGAAAAGTTGTAT--TTAATACACATAAACCCAGTGGCGTG--------------AA-AA-GTGA-GGGGGCAC----AA---CTATC-ATAAAG-TTTGG-TTAAAAGGGGGAGC---CA-CA--CTTTAAAAACAAAATTGGCAAAGCA-TA---ATAAAGA---AGAAAATAAGAAGATGGGCATAGAC-TAACACAG-TGTTTTTTT---ACATATGTATCA-AATACTGG-TGAC-CACTCTA-TATA-TATTTCAAACGATCG-C----GCCGAT--AGTC-AGATACT-TCT---AGTTCAAAG-TCGA--ATAGTTGAA-AT---A--------TGA----------AGAACAAGCTGTAATAAAA-AAAATTCTT--AA-CTTTATTTGGACATTTCA-CGTCATT--GG--AGTGACTT-AGAT--AA-T----AATGAAATTC--T-T--AAATGAA-TATGATTAT-CAA-----AATT-G--TTAC-TTGTC-G-ATGGCGTGGATCAGTCAGGATAT---ATAAGGGGGGGGGG----CG--ATTA-AAAT--AGC-T-AA-CCTAACTCG-T----GCAAAAAT-AATCATA-TGGATTCGAGGCAAT-TGTTATGGTACAT-GCAA-GAAAT-AATGTTTTTGAGACAGC---TGAGAAACCTGCATATTAAAATTGCAATATTTTTTTAACGTGGTAT------C-CTCAT-----CTGATCATTCTCATGT-AAAGAA-------------------AAAGTGGGGAGGGGG------CAGCAAGACGCCATTAATGC---C---AA-C-AT-TTTGTGC----CCCCCCCTTCC---AAAA-T----GAGGGAC-GTGCC----TCTG--GCACC---TCCC-TTTTTTTGGGGGGGGGGGGTCC---CTACGCCGTAAGTAT-AGTTTTAAATGTACAAA-TGTGACATGT-CACAATTGATATTC--ATTT--AAGTTAGAT-TTAAA-CAATG-CAATTTAAATTCAGAATG------TAAATAAC---AACGAAATGCTG-AATAGTTAAATTGAAGTAATAATATAT--ATTTGGCTGCTCTACAATCACTAAATTAGACAAT-AT-ACAATTATACTTTTAATCGTACCTCCATTAAACTTGAAT-ATCTACAATTGCTTAACACTTTCTGAGAGATAATTAAAGTTTTAAATAAAA-AT-CAAACATACGGCG-AA----ATAAGAT-----------ACC--CTTCTT----T--ACGTGA-GTCGCA--------------CA-A---G-AACGTC-AAATG-CACCAACG--------ATT--ATCTT-AACTATAC--TATGTTTAC---T-ATGTAATTATA-CATACGTAAAAT---GCTT-CTTACTGACATATGGATAATGATTTTTTAT-GAAAACTA-------CCTATGAAGGAA-TTTTGA-GGAATATCATTTAATTTTGAAAGCGGGGC--GAATTGGACCCaggaccaagt
gi|4 : ttAGAAAGGG----GGGGGGGGTCCGAAACGC------CAAACACCTT-ACATccagacaggagcctttaag
gi|5 : ggacacctttaaaacctttaaagtaatgagttcccctagattattttacgtatataatatttgtagcgagatgaattttaatttattttattcacatttattcaagggctcagttcgtcgtttcaaacttatatttctacatagtacacagcacctaccactaccataacaaggggaaggagtgatcgcataaataaaaattatggtaaatctacgacattctcaaataatgtggggccaagttccctagctgttgctacaatgtacacagtaatatatatgtgcctgtaaaagtttttgttttgcagaattactttacatgttttaatgtattagattatggtcctatatttaaaagtacattaaaacaactaccgaacactattggttactattttcttcattaaaatcgtggaacacgtgcatgttcaagtagagcatgatatgttcattcaatttagtagcgtgtgcataaaccaccaacccgtgcggatctAGAAAGGG----GGGGGGGGGTCGAAACAC------CAAACATATC-CT-TA-TGG-CCTCCGGATGTGAATTAGAAGATATATAAAATT-----GAT-ATATAGTT--CAAA-CTA--TTTTATTTGCGTAAATACGTATA--TA--------------------T--TAAAGGAATTGTCATGTAAGAAATA-ATTATCTTTTCTTTAAGAAAAA-A-TAA-TGGG-TGTACAT--AA-ATAT---ATACA--CA-ATCTGTTTATG-TTA-CGACATCGGAAAATA--C------CTGTAT-------AGATT-TTTTGCTGTT--G--T---TATGAC---TGTGTCAAAATAAT--GT------T-------CTA-----TAAGACTT----ACCACA--TTTCAAATCTTATCACTTCCTA---T---AT-----CAGATCCA-TTTCCAATCCTGATTGTCCTATAC--CTTTTCAAG-ATCCGGTCTT------------------TTTTTGGTTTGCA-TTTTTGTTTATCTTTC--AC-ATTCTACATCT--GATCCATGGAATTTT------TCA-TGATCTTTT--T--AC-TT----ATCC-AACGTAGCAT----TTATTA---GTATGTGTGCCT-TT-GCTG-AACACGCC--------------A-----AC--------GCACTTTT-TA------AAAAAATGAAG-AAAGT-GTAT--ATA-TACACATtgttgcgctttgacaaatccagggagattatagtgttataatgaagccatctttgaaatattggaattacgattgttcgatatcttcttccattttcaaattacataattacggtgattataatacaatgctttctttaatactcaatttttactttacaatagatagtgttcaaagtaattatgaatatgtcacgtgatctttactttttttatacaacaagatgctggaaaatacatcaattgttatataaaaagtcttactgtttaaactatctttatttcgccggtcaatggaaaactggtcgaaaacgaatatagaagtttatttccacgatactctttctgactaaagacatttagaaag
gi|6 : ccaccaactcgtgtgggtctTTAAGTAAAA-CTCAAAACATATGTCAAAATAAGATGA-ATTTTAATTTTTAATCGTCTTCTTCATGTTGATGTGACGTTGCA--------------TA-------AACATCAAAATG-ACACAATGTTAATATAATTTAGTTTAAAACTATATAGTGTATTTAC--ATCATAT-ATTA
gi|6 : aaaaaatatagtgcacgcttgACTATA---TA-GTGTAC--AT-GTAT--TTACATCATATAT-TAGTAAAGCCTCTTT-CGAACATAC-GATTATCATTTTCTGA--AAAGATAC----ACCCAGTGAAAGAA-TTTTGA-GAAGCATCATCGAA-TTTAGACGCTGGGCCGAATTTGGCCCCGAACGgtaaagcctctnactatatagtgtacatgtatttacatcatatattagtaaagcctctttcgaacatacgattatcattttctgaaaagatacacccagtgaaagaattttgagaagcatcatcgaatttagacgctgggccgaatttggccccgaacgtaccaagtcct
gi|9 : aaaaaatatagtgcacgcttgttaagtaaaactcaaaacatatgtcaaaataagatgaattttaatttttaatcgtcttcttcatgttgatgtgacgttgcataaacatcaaaatgacacaatgttaatataatttagtttaaaactatatagtgtatttacatcatatattagtaaagcctctnGG-GGTGGGGATACGCCAAACACAA-CGATTCCT------------ATCA-AATAC-GA-TGAC-CA-TTCC-TATA-T-TTCCAAA-GG---------GTCGA---AGTCCAGCGACTCTCT---AGTTCAAAGGTCCGCCATAGTTCGACATTTCAG-CGTCATTGACCAGTGACTTAGATTAAACTGTAA----ATTGAATTCTT--taccaagtcct
gi|9 : TTCG-ACATTTCAGCGTCATT--GACCAGTGACTT-AGATTAAA-CTGTAAATTGAATTC--T-TTCCTATGAAATATAATCAT-TAA-----AATT-AATTTACCTTGTCAG-ATG-CGT-----AAGCGATATATGTAAC--------GATG-------CATCATA-----------------AACTCGGTCAAAAGAAAAAT--GT-ATAGTAGATTCGGAGAAATATGTtcctatgaaatataatcattaaaattaatttaccttgtcagatgcgtaagcgatatatgtaacgatgcatcataaactcggtcaaaagaaaaatgtatagtagattcggagaaatatgtg
blockSeqs : AGGA TC GG T AGTGTATAATCCTAT A . . C TA AAATTAATAA CA A AT A T ACTAGTATTATATATATACATCTAT T C TAA . . A TC . T . AC GT G G G A TACGACATCGGA . T AGT CAG T CA A GTGTTACATGTA C . A T A G C TTTATAT . G C TAC T TAT G C TTGGTTGTTGTTGTGTTT T T G TATC TTA T TC C GT TCC TTTT . GTT CT . A G AT G CGT T T G A . A ATAGATACAGTAATAA GAAA A T . A G G TTGGGCTAAAA T . T G A AATTAAG A G A GGGA . N NN C N N N AGCA N TAG A N N C TTACATATG G T . . C ATA . T GATCCTC T A C . A CC CA TTCAG T CCAGTGACTTAGATT AATAAAAAA TA A G G TCATTGACCA T TA CTGTA A CATTC A A A AAAAG AAT C A . G G A G G ATATAAGGGGGGGGGGCG T A AGAGCATAACC GTCAAA AATC G T TA AA C T A T TA GA . AC T T CA T CGTGGTATC TCTAA T C C A ATTTGTGTTTTTAAAAAAC G GGTTTA A G A CAAAAAACG C T T CCCGT . A . . CCCG GAAA C . TGGGG GG G TACGCCG A TTA . T A T CAG TA . T GC CC A G GTAATGCTG CTGC T . A AATTGAAGTAATAATATATATTT T A T TAG T . AC C CT . C AC A A T C C A TAAG ATTTTAATTTTTA GT CATGTTG G C CAGAGT G A CA A TTAATATAA TA A TAG CA C A T TAA AAA CC ATG TATAACA C TGATTAC G T A T AA
blockSeqs : . GT GA G CAAACACCTT A . . C T TTGATAT . . . A C TAT T A TA . . C . . . . T A . C G A TACCTGTAT . T AA . G A A GTTCTA C . . T A C C TTAT . . C AC T ATC G . . C . . . C . . C CT . TT . T T . A G T T . T T . . . A AAC TTA A . . . G G CTGGGCTC . . C . A AAA . . . NN . A TA . G A A AT A N . T C T TA . . . . . CTA . T CGATCGC T A T . G . A AGA T TGTCGGAGAA AAATTG . . . . TCATTGGA . . T A TTTC A T C . A C A . . G C T G ATGTAACGATGC T A AGCTAAC GT ATC . T TA GG C . . . TG C . C T T A G CCATCG . C C . . . G . C . G CAAC . . T C . . . . . GG . . . A . TACATC . T . A . T A . . T AC C . . GCA GTTC T . A TATG T A T . . . C A T . C A . GAT . TT G C CAAG G A C C A . A C . . . . TT . CT GC TTTATG C CAC G . . . GA
blockSeqs : . G GA A CAAACATATC . A . . . . . . . A G . . . . ATAT . . GT . . C . TTC . . . . . . . TAT . . C AA T AT . . . T . . . C . . . C . T . T C . . . . . . T T . . . . AAC T . . . . G G . . . G . A AA . . . C . . T . . A . N A . . T C C T . . . . . G . C GG . C C . G . A A T AGAAC . . . . . . . T A TT . C T . G . . . . . . G T AACGATGCATC . . . T GT . . T C . . . TG . . . T T . A TTC . C C . . . G . A . . CC . . . C . . . C C . . GTA AC . . . . . . . . AT . T G . TA A . A A . . . C . . . . TT . C AT TCTGA A CAC G . . . GA
blockSeqs : . . T . . . . T . . . . . . . . . . . . . . . . . . A C . . . . T . C AC ATGA G . . . . . GA
blockSeqs : . . . . . . . G
blockSeqs : . .
blockSeqCons : C* T*********** G*** GG********** *** *** A* TT* AC* CAC**** GA
originalCons : AGAAAGGG----GGGGGGGGGTCGAAACNC------CAAACATNTC-CCATA-TGG-CCTCCGGATGTGAATTAGAAGATATATAAAATTAAATTGAT-A-ATAGTT--CAAAACTA--TTTTATTTGCGTAAATACGTATA--TA--ATT-TGCATATACGTCTAT--TAAAGGAATTGTCATGTAAGAAATACATTATCTTTTCTTTAAAAAAAA-AATAA-TGGG-TGTACAT--AA-ATATC--ATATA--CA-CTCTGTATACG-TCG-CGACATCGGAAAATA--CG--ACATCGTAT-------AGATT-TTTTGCTGTT--GAAT---TGTGAC---TGTGTCAAAATAAT--GT------T-------CTA-----TAAGACTT----ATCACA--TTTCAAATCTTATCACTTCTTAT--T---AT-----AAGTTTCA-TTCTCAATCCT-ATTGTCATA-AN--CTTTTCAAG-AT-CGGT-TT------------------TTTTTGG-TTGTT-TTTTTGTT----TTTC--AC-AT--TACATCC--GA---ATGAAA-TCT------TCA-TGATCTTTT-CT--ACTTT----ATCCAAACGTAGCAT-TACTTAGTA---GTATGTGTGCCT-TT-GCTG-AACACGCC--------------A-----AC--------GCACTTTNAAA------AAAAAATGAAGAAAAGT-GTAT--ATA-TACACATAAATCCAGTGGCGTGNT--GGGCT----AAA-AA-GTNA-GGGGGCAC----AAG--CTATC-ATAAA--CTTGG-TTAAAAGGGGGGGNG--CA-CAAACTTTAAAAA-AAAATTGGCAAAGCAATA---A-AAAGAT--AGAAAATAAGA-GATGGGCATAGACCTAACACAG-CGATTCCTT---AC---TGTATCA-AATAC-GG-TGAC-CA-TCCG-TATA-TATTTCAAA-GATC--C----GCCGAT--AGTCCAGAGACTCTTT---AGTTCAAAGGTCCG--ATAGTTCGA-AT---AG-CGCCATTGAC----G----AGAACAAGCTGTAA----A-AAAATTCTT--AAACTTTATTTG-ACATTTCA-CGTCATT--GG--AGTGACTTTAGAT--AA-T----AATTGAATTC--T-T-CAAATGAAATATGATTAT-CAA-----AATT-A--TTACCTTGTCAG-ATG-CGTGGATCAGNCAGNATAT---AC--------GATG----CGTCATCATAAAT-GAGC-T-AA-CCTAACTCGGT----ACAAAAAT-AAT-ATA-TGGATTCGGAGAAATATGTTATGGTACAT-GCAA-GAAAT-AATGTTTTTGAG-CAGC---TGAGAA--CTGCATATTAGAATTG--GTATTTTTTTNAC------T------C-CTCAT-----CTGATCATTCT-ATGT-AAAGAA-------------------AAAGTGGGGAGGGGG------CAACAA-ACGCCACTTATGC---C---AAAC-AT-TT-GTGC----CCCCCCCTTCC---AAAAAT----GAGGGAC-GTGCCCC--TCTG--GCACCCGCTCCC-CTTTTT-----GTCGNGCGCCCGTGTTACGCC-TAAGTAT-AGTTT--AATGTACAAA-TGTGNCATGTACACAATTGATATTC--GTTT--AAGTTAGAT-TTAAAACAATG-CAATTTAA-TCCA-AATGCA----TAAATAATNCAAACGAAATGCTG-AATAGTTA----------------TAT--G---GGCTGCTCTACAATCACTAAAT---ACAATTAC-ACAATTATACTTTTAATCGTANCTCCGTTAAANTTGAATCATCTACAATTGNTTANNANTTTCTGAGAGTCGATTAAAGTTTTAAATAAAA-CTCCAAACATACGGCGAAA----ATAA-AT-----------ACC--CTTCTT----TTGACGTGACGTCGCA--------------CA-A---GTAACGTCAAAATG-AANCAACG--------ATT--ATCTTAAACTATAC--TATGTTTAC--AT-ATGT-ATTATA-CATACGT-TAAT---GCTTCCTTACGAACATAC-GATAATCATTTTATGA-GAAANATAC----ACCCTATGAAAGAA-TTTTGA-GGAATATCATTTAA-TTTGAACGCGGGGCCGAAATTGGACCCAAACG
finalCons : AGAAAGGG----GGGGGGGGGTCGAAACNC------CAAACATNTC-CCATA-TGG-CCTCCGGATGTGAATTAGAAGATATATAAAATTAAATTGAT-A-ATAGTT--CAAAACTA--TTTTATTTGCGTAAATACGTATA--TA--ATT-TGCATATACGTCTAT--TAAAGGAATTGTCATGTAAGAAATACATTATCTTTTCTTTAAAAAAAA-AATAA-TGGG-TGTACAT--AA-ATATC--ATATA--CA-CTCTGTATACG-TCG-CGACATCGGAAAATA--CG--ACATCGTAT-------AGATT-TTTTGCTGTT--GAAT---TGTGAC---TGTGTCAAAATAAT--GT------T-------CTA-----TAAGACTT----ATCACA--TTTCAAATCTTATCACTTCTTAT--T---AT-----AAGTTTCA-TTCTCAATCCT-ATTGTCATA-AN--CTTTTCAAG-AT-CGGT-TT------------------TTTTTGG-TTGTT-TTTTTGTT----TTTC--AC-AT--TACATCC--GA---ATGAAA-TCT------TCA-TGATCTTTT-CT--ACTTT----ATCCAAACGTAGCAT-TACTTAGTA---GTATGTGTGCCT-TT-GCTG-AACACGCC--------------A-----AC--------GCACTTTNAAA------AAAAAATGAAGAAAAGT-GTAT--ATA-TACACATAAATCCAGTGGCGTGNT--GGGCT----AAA-AA-GTNA-GGGGGCAC----AAG--CTATC-ATAAA--CTTGG-TTAAAAGGGGGGGNG--CA-CAAACTTTAAAAA-AAAATTGGCAAAGCAATA---A-AAAGAT--AGAAAATAAGA-GATGGGCATAGACCTAACACAGC-GATTCCT-----------TATCA-AATAC-GG-TGAC-CA-TCCG---TA-TATTTCAAAGG----------GCCGA---AGTCCAGAGACTCTTT---AGTTCAAAGGTCCG--ATAGTTCGAA-T---AG-CGCCATTGAC----G----AGAACAAGCTGTAA----A-AAAATTCTT--AAACTTTATTTG-ACATTTCA-CGTCATT--GG--AGTGACTTTAGAT--AA-T----AATTGAATTC--T-T-CAAATGAAATATGATTAT-CAA-----AATT-A--TTACCTTGTCAG-ATG-CGTGGATCAGNCAGNATAT---AC--------GATG----CGTCATCATAAAT-GAGC-T-AA-CCTAACTCGGT----ACAAAAAT-AAT-ATA-TGGATTCGGAGAAATATGTTATGGTACAT-GCAA-GAAAT-AATGTTTTTGAG-CAGC---TGAGAA--CTGCATATTAGAATTG--GTATTTTTTTNAC------T------C-CTCAT-----CTGATCATTCT-ATGT-AAAGAA-------------------AAAGTGGGGAGGGGG------CAACAA-ACGCCACTTATGC---C---AAAC-AT-TT-GTGC----CCCCCCCTTCC---AAAAAT----GAGGGAC-GTGCCCC--TCTG--GCACCCGCTCCC-CTTTTT-----GTCGNGCGCCCGTGTTACGCC-TAAGTAT-AGTTT--AATGTACAAA-TGTGNCATGTACACAATTGATATTC--GTTT--AAGTTAGAT-TTAAAACAATG-CAATTTAA-TCCA-AATGCA----TAAATAATNCAAACGAAATGCTG-AATAGTTA----------------TAT--G---GGCTGCTCTACAATCACTAAAT---ACAATTAC-ACAATTATACTTTTAATCGTANCTCCGTTAAANTTGAATCATCTACAATTGNTTANNANTTTCTGAGAGTCGATTAAAGTTTTAAATAAAA-CTCCAAACATACGGCGAAA----ATAA-AT-----------ACC--CTTCTT----TTGACGTGACGTCGCA--------------CA-A---GTAACGTCAAAATG-AANCAACG--------ATT--ATCTTAAACTATAC--TATGTTTAC--AT-ATGT-ATTATA-CATACGTT-AAT---GCTTCCTTACGAACATAC-GATAATCATTTTATGA-GAAANATACAC----CCTATGAAAGAA-TTTTGA-GGAATATCATTTAA-TTTGAACGCGGGGCCGAAATTGGACCCAAACG
6 sequences could not be aligned to this reference sequence:
Unaligned ( gi|7 ): ATGGTACATCTACCGTGGCTTCTCAATAATGTAGTGCTCGAAGTTCGCCTGTGTTGCTAACACAAGTATACAATGTGCTGTAAAAGTTTTTGTTTTGCAGAATTAATTTACACGTTTTAATGTATTAGATTATGTTCCTACGTGTATTTAAAAACTAAAAGTACATGTATGAAAGTATAAGCTATTTGCTAACTGATTTTCTTCAATAAATCGTGGAACACGTGCATACATGTATCAAGTAGAGGCAATGATTTTCATACATACGGAGGCCTTTTTGCCAACCACCACTCGCTCGTGGCGTATCTAGAAGGGGGGGGGGG
Unaligned ( gi|8 ): AAAATCATAAAACAAACACATTGTCGAAAGAAAGTAGGGGTAACGTCCCCCTGTTGCTACGTGCCTATAGAACAATTCTTGTTTGTACAGTCACCTTACATGTGTTAATTAATACTTCATGTGTACTGGAACGTGTTCTATTTCATTGTCCTATCAAGAAATACATGTAGCCATTATTTACTATTTTCATCCACAAATGCTCATGAAGTAAAGCACGACTTTCACACATGGAAGTCATTTACGCACGGCCCACCCACCGTCCACTTATAGCATTAGTGGCATGTGCACAAATCACGTACGGATCTAAAAGGGGG
Unaligned ( gi|13 ): GGGCTCAATTCTTCGCTTTAAGTTTGCATTCTACAATCATTCACTACTACCTTAAAAAATAATAAACTGAACTTCGCATGTAAAATAATGAAGCAACCACATTGTTAAAAGAATGTGGGGCCCAAGTTTCCCTGTTGCTACGTGCCTATAGAACAATTCTTTGATTTGATTGTACAATCACCTTAATGCGTTAA
Unaligned ( gi|15 ): GTTTATACAACAAGCTGCTAGAAAATGCATGAATTGTCATATAGAGTTTTATTATTTAAAAAACTATCACATTTCGCCGGTCATTGGAAACTGGTCGAAAATGAATACTAGACAGGTAAATTGATGATTATTTCCACGATGATTCTTTGACTAAATTGGACATTTAGCAAGATA
Unaligned ( gi|17 ): GGTAAATCTACGACATTCTCAAAATAATGTGCGGCCAAGTTCCCTAGCTGTTGCTACATGTACAATATATATATGTGTCTGTAAA
Unaligned ( gi|18 ): ACAATTGTTTGATATATCCTTCTTCCATTTTCAATTTACATAATTATCAGTGATTAATTTAATCATTTTCTTCATACTCAATT
Alignments
lowQualScore : 111111111111111111111111111111
lowQualScore : 2222 22222222222222222 1 1 11 4444444444444 11 11 444444444444444444444444444 11 111 1 1 11 1 333 11 11 11 1 1 777777777777777777777777 1 555555555 111 11 77777777777777777777777777 2222 222 1 33333333333333 1 1 11111 1111 555555555555555555 1111 111 1 11 1 2222 111 5555555555 1 44444 2222 11 111 1 1 1 000000000000000000000000000000 4444444444 1 11 1 3333333333333 1 1 1 222222222 1 22 1 2222 1 11 1 22222 333 11 6666666666666666666 44444444 7777777777777777 111 11 111111 8888888888888888888 3333333333 11 1 1 333333333333 1 11 222222 2222222 11 22222 1111 1 1 555555555555555555555555555 333333333333 222222 11111 1 11 1 1 1 11 111 22 22 7777777777777777 22222 1 1 7777777777777777777 222222 1 444444444444 1 1 22222 222 2222 1 2222 2222 1 33333 11 2222222 1 222 1 111 11 1 11 1 1 444444444 1111 1 9999999999999999999999999 222 1 11 11 1 1 2222 55555555555555 11 2222222 88888888888888888888888 11 333333333 11 111 111 111 11 111 2222222 2222222 1
lowQualScore : 1111 77 33 1 99999999999999999 3 3 3 6 44 5555555555555 88 7 88 7 3 555555555555555555555555555 7 44 000 0 0 8 33 0 222 33 00 66 0 2 2 3 111111111111111111111111 0 3 111111111 0 777 8 22 3 44444444444444444444444444 2 1111 999 3 3 8 5 22222222222222 0 0 2 55555 3 4444 2 8 999999999999999999 3 8 8 7777 444 0 33 5 4444 777 5555555555 0 33333 55 1111 3 2 33 8 777 3 3 0 0 0 3 222222222222222222222222222222 5555555555 3 0 33 0 2 2 4444444444444 0 0 1 0 3 333333333 0 33 0 0000 0 5 77 0 5 5 5 11111 5 333 8 2 2 11 1111111111111111111 8 8 8 8 00000000 8 0 8 0 6666666666666666 0 5 6 444 3 11 88 777777 0 3 5555555555555555555 2222222222 33 7 0 0 333333333333 5 33 666666 3 8888888 3 1 00 55555 8888 8 9 0 0 2 2 1 1 999999999999999999999999999 3 3 111111111111 444444 99999 0 3 66 22 2 0 0 0 33 88 777 33 3 3 33 1 0000000000000000 55555 6 2 0 0 7777777777777777777 2 888888 9 0 6 444444444444 0 0 3 33333 333 7 8888 3 3333 8888 6 3 33333 33 6 3333333 3 555 3 1 7 7 999 33 0 3 99 22 0 0 333333333 2222 3 0 3 8888888888888888888888888 7 7 7 333 7 3 88 1 66 5 1 22 1 7 0 3 0 2 3 1111 11111111111111 33 4444444 2 2 00000000000000000000000 6 9 00 1 0 999999999 33 3 000 99 6 6 8 444 444 33 0 111 9999999 1 1111111 0 6 6 5 66
lowQualScore : .... .. .. . ................. . . . . .. ............. .. . .. . . ........................... . .. ... . . . .. . ... .. .. .. . . . . ........................ . . ......... . ... . .. . .......................... . .... ... . . . . .............. . . . ..... . .... . . .................. . . . .... ... . .. . .... ... .......... . ..... .. .... . . .. . ... . . . . . . .............................. .......... . . .. . . . ............. . . . . . ......... . .. . .... . . .. . . . . ..... . ... . . . .. ................... . . . . ........ . . . . ................ . . . ... . .. .. ...... . . ................... .......... .. . . . ............ . .. ...... . ....... . . .. ..... .... . . . . . . . . ........................... . . ............ ...... ..... . . .. .. . . . . .. .. ... .. . . .. . ................ ..... . . . . ................... . ...... . . . ............ . . . ..... ... . .... . .... .... . . ..... .. . ....... . ... . . . . ... .. . . .. .. . . ......... .... . . . ......................... . . . ... . . .. . .. . . .. . . . . . . . .... .............. .. ....... . . ....................... . . .. . . ......... .. . ... .. . . . ... ... .. . ... ....... . ....... . . . . ..
lowQualScore : 2222 22 22 0 00000000000000000 2 3 3 7 77 3333333333333 33 3 33 3 7 333333333333333333333333333 3 00 888 0 0 8 88 0 888 88 22 55 0 8 5 5 888888888888888888888888 0 2 000000000 2 555 8 00 2 88888888888888888888888888 5 2222 222 2 0 8 0 55555555555555 0 0 5 88888 2 0000 5 0 000000000000000000 8 0 0 0000 000 0 88 0 5555 555 8888888888 0 88888 88 2222 2 5 22 8 555 2 2 0 0 0 2 000000000000000000000000000000 8888888888 2 0 88 0 5 5 8888888888888 0 0 0 0 2 555555555 0 88 0 0000 0 8 55 0 2 8 8 00000 8 222 0 8 2 22 0000000000000000000 0 0 0 0 22222222 0 8 0 8 4444444444444444 8 6 4 000 2 00 88 555555 2 2 0000000000000000000 8888888888 88 3 0 0 888888888888 5 88 000000 2 2222222 2 2 22 00000 5555 8 2 0 0 5 5 0 0 000000000000000000000000000 2 2 888888888888 888888 22222 0 2 55 22 5 0 0 0 55 88 555 88 2 2 88 0 2222222222222222 00000 5 5 0 0 5555555555555555555 5 888888 2 0 5 555555555555 0 0 2 88888 333 3 3333 3 3333 7777 7 3 33333 00 7 7777777 3 777 3 0 3 3 000 88 0 2 55 55 0 0 555555555 5555 2 0 2 3333333333333333333333333 3 3 3 333 3 3 00 0 55 0 0 00 0 3 7 2 0 5 2 2222 88888888888888 88 2222222 5 5 00000000000000000000000 5 2 88 0 2 555555555 88 2 222 22 7 7 0 888 000 22 8 444 4444444 0 0000000 0 7 7 7 66
consensus : AGAAAGGG----GGGGGGGGGTCGAAACNC------CAAACATNTC-CCATA-TGG-CCTCCGGATGTGAATTAGAAGATATATAAAATTAAATTGAT-A-ATAGTT--CAAAACTA--TTTTATTTGCGTAAATACGTATA--TA--ATT-TGCATATACGTCTAT--TAAAGGAATTGTCATGTAAGAAATACATTATCTTTTCTTTAAAAAAAA-AATAA-TGGG-TGTACAT--AA-ATATC--ATATA--CA-CTCTGTATACG-TCG-CGACATCGGAAAATA--CG--ACATCGTAT-------AGATT-TTTTGCTGTT--GAAT---TGTGAC---TGTGTCAAAATAAT--GT------T-------CTA-----TAAGACTT----ATCACA--TTTCAAATCTTATCACTTCTTAT--T---AT-----AAGTTTCA-TTCTCAATCCT-ATTGTCATA-AN--CTTTTCAAG-AT-CGGT-TT------------------TTTTTGG-TTGTT-TTTTTGTT----TTTC--AC-AT--TACATCC--GA---ATGAAA-TCT------TCA-TGATCTTTT-CT--ACTTT----ATCCAAACGTAGCAT-TACTTAGTA---GTATGTGTGCCT-TT-GCTG-AACACGCC--------------A-----AC--------GCACTTTNAAA------AAAAAATGAAGAAAAGT-GTAT--ATA-TACACATAAATCCAGTGGCGTGNT--GGGCT----AAA-AA-GTNA-GGGGGCAC----AAG--CTATC-ATAAA--CTTGG-TTAAAAGGGGGGGNG--CA-CAAACTTTAAAAA-AAAATTGGCAAAGCAATA---A-AAAGAT--AGAAAATAAGA-GATGGGCATAGACCTAACACAG-CGATTCCTT--------A--------TCA-AATAC-GG-TGAC-CATCC---G---TA-TATTTC-AAAGGTTC-C--GCCGAT--AGTCCAGAGACTCTTT---AGTTCAAAGGTCCG--ATAGTTCGA-AT---AG-CGCCATTGAC-----AG-AAC-------AAGCTGTAA----A-AAAATTCTT--AAACTTTATTTG-ACATTTCA-CGTCATT--GG--AGTGACTTTAGAT--AA-T----AATTGAATTC--T-T-CAAATGAAATATGATTAT-CAA-----AATT-A--TTACCTTGTCAG-ATG-CGTGGATCAGNCAGNATAT---AC--------GATG----CGTCATCATAAAT-GAGC-T-AA-CCTAACTCGGT----ACAAAAAT-AAT-ATA-TGGATTCGGAGAAATATGTTATGGTACAT-GCAA-GAAAT-AATGTTTTTGAG-CAGC---TGAGAA--CTGCATATTAGAATTG--GTATTTTTTTNAC------T------C-CTCAT-----CTGATCATTCT-ATGT-AAAGAA-------------------AAAGTGGGGAGGGGG------CAACAA-ACGCCACTTATGC---C---AAAC-AT-TT-GTGC----CCCCCCCTTCC---AAAAAT----GAGGGAC-GTGCCCC--TCTG--GCACCCGCTCCC-CTTTTT-----GTCGNGCGCCCGTGTTACGCC-TAAGTAT-AGTTT--AATGTACAAA-TGTGNCATGTACACAATTGATATTC--GTTT--AAGTTAGAT-TTAAAACAATG-CAATTTAA-TCCA-AATGCA----TAAATAATNCAAACGAAATGCTG-AATAGTTA----------------TAT--G---GGCTGCTCTACAATCACTAAAT---ACAATTAC-ACAATTATACTTTTAATCGTANCTCCGTTAAANTTGAATCATCTACAATTGNTTANNANTTTCTGAGAGTCGATTAAAGTTTTAAATAAAA-CTCCAAACATACGGCGAAA----ATAA-AT-----------ACC--CTTCTT----TTGACGTGACGTCGCA--------------CA-A---GTAACGTCAAAATG-AANCAACG--------ATT--ATCTTAAACTATAC--TATGTTTAC--AT-ATGT-ATTATA-CATACGT-TAAT---GCTTCCTTACGAACATAC-GATAATCATTTTATGA-GAAANATAC----ACCCTATGAAAGAA-TTTTGA-GGAATATCATTTAA-TTTGAACGCGGGGCCGAAATTGGACCCAAACG
Reference ( family-613 ) : AGAAAGGG----GGGGGGGGGTCGAAACNC------CAAACATNTC-CCATA-TGG-CCTCCGGATGTGAATTAGAAGATATATAAAATTAAATTGAT-A-ATAGTT--CAAAACTA--TTTTATTTGCGTAAATACGTATA--TA--ATT-TGCATATACGTCTAT--TAAAGGAATTGTCATGTAAGAAATACATTATCTTTTCTTTAAAAAAAA-AATAA-TGGG-TGTACAT--AA-ATATC--ATATA--CA-CTCTGTATACG-TCG-CGACATCGGAAAATA--CG--ACATCGTAT-------AGATT-TTTTGCTGTT--GAAT---TGTGAC---TGTGTCAAAATAAT--GT------T-------CTA-----TAAGACTT----ATCACA--TTTCAAATCTTATCACTTCTTAT--T---AT-----AAGTTTCA-TTCTCAATCCT-ATTGTCATA-AN--CTTTTCAAG-AT-CGGT-TT------------------TTTTTGG-TTGTT-TTTTTGTT----TTTC--AC-AT--TACATCC--GA---ATGAAA-TCT------TCA-TGATCTTTT-CT--ACTTT----ATCCAAACGTAGCAT-TACTTAGTA---GTATGTGTGCCT-TT-GCTG-AACACGCC--------------A-----AC--------GCACTTTNAAA------AAAAAATGAAGAAAAGT-GTAT--ATA-TACACATAAATCCAGTGGCGTGNT--GGGCT----AAA-AA-GTNA-GGGGGCAC----AAG--CTATC-ATAAA--CTTGG-TTAAAAGGGGGGGNG--CA-CAAACTTTAAAAA-AAAATTGGCAAAGCAATA---A-AAAGAT--AGAAAATAAGA-GATGGGCATAGACCTAACACAG-CGATTCCTT--------A--------TCA-AATAC-GG-TGAC-CATCC---G---TA-TATTTC-AAAGG-------GCCGA---AGTCCAGAGACTCTTT---AGTTCAAAGGTCCG--ATAGTTCGA-AT---AG-CGCCATTGAC----GAG-AAC-------AAGCTGTAA----A-AAAATTCTT--AAACTTTATTTG-ACATTTCA-CGTCATT--GG--AGTGACTTTAGAT--AA-T----AATTGAATTC--T-T-CAAATGAAATATGATTAT-CAA-----AATT-A--TTACCTTGTCAG-ATG-CGTGGATCAGNCAGNATAT---AC--------GATG----CGTCATCATAAAT-GAGC-T-AA-CCTAACTCGGT----ACAAAAAT-AAT-ATA-TGGATTCGGAGAAATATGTTATGGTACAT-GCAA-GAAAT-AATGTTTTTGAG-CAGC---TGAGAA--CTGCATATTAGAATTG--GTATTTTTTTNAC------T------C-CTCAT-----CTGATCATTCT-ATGT-AAAGAA-------------------AAAGTGGGGAGGGGG------CAACAA-ACGCCACTTATGC---C---AAAC-AT-TT-GTGC----CCCCCCCTTCC---AAAAAT----GAGGGAC-GTGCCCC--TCTG--GCACCCGCTCCC-CTTTTT-----GTCGNGCGCCCGTGTTACGCC-TAAGTAT-AGTTT--AATGTACAAA-TGTGNCATGTACACAATTGATATTC--GTTT--AAGTTAGAT-TTAAAACAATG-CAATTTAA-TCCA-AATGCA----TAAATAATNCAAACGAAATGCTG-AATAGTTA----------------TAT--G---GGCTGCTCTACAATCACTAAAT---ACAATTAC-ACAATTATACTTTTAATCGTANCTCCGTTAAANTTGAATCATCTACAATTGNTTANNANTTTCTGAGAGTCGATTAAAGTTTTAAATAAAA-CTCCAAACATACGGCGAAA----ATAA-AT-----------ACC--CTTCTT----TTGACGTGACGTCGCA--------------CA-A---GTAACGTCAAAATG-AANCAACG--------ATT--ATCTTAAACTATAC--TATGTTTAC--AT-ATGT-ATTATA-CATACGT-TAAT---GCTTCCTTACGAACATAC-GATAATCATTTTATGA-GAAANATAC----ACCCTATGAAAGAA-TTTTGA-GGAATATCATTTAA-TTTGAACGCGGGGCCGAAATTGGACCCAAACG
gi|1 : ----GGGGGGGGATC----CTC------C-----TCTCGCCATAATGGGCCTC--GATGTGAAT-AGAAGATACATCAAATTAAATT------ATAGTT--CAAAACTA--TTTT---------------------TA--ATT-TGCATATACGTCTATATTATAAGAATTGTCA-GTAAGAATCTCATTATCTTTTCTTTTAAAAAAA-AATAAGTGGGGTGTACAT--AAGATATCTCATATATTCA-CTCTTTATAC--TCG-CAATAGTGCATAATAATTGTTACATTGTACGTTCCGGAAATGGTTTTGCTGTTAAGAACATATGTGAC---TGTGTAAAAATAATTTGT------TACATGTACTAGTACATAAGACTTTTATATCAAACTTTTCCAATCTTGTCA-TTCTTATATT---ATCCCTCAGGTTTCAATTCTCAATTCT-ATTGT-ATA-AGGACTT----------CGGT-TT------------------TTTG-GG-CTGTT-TTTTTTTT----TTAA--AC-AT--TA-ATTCTGGA---ATGAAAATCTGTAATTTCAGTGATCTTTTTCTTAACTTTTTTTATCCAAACGTAGCAT-TACTTAGTA---G---G-GTGCTT-TG-GCTACAGCACGCCTATAGTAAGTAATTA-----ACT-------GCACTTTGAAAGAAAAAAAAAAATGAAGAAAGGT-TTATTAATT-TACACATAAATCCA-TG-CTTGGTTGGGGCT----AAA-AAAGTGA-GGGGGC-C----AAGTCCTATC-ATAAATTCTTGG-TTAAAAAGGAGGGAG--CAGCAAAATT----AA-AAAATTGGCA--GCAATA---A-AA-GATTCAGAAAATAGTA-GA-GGGCATAGACCTTAAACAGGCGATTCCTTCAAACTGTA--------TCA-AACAC-GGGTGACGCATCC---AATATAATATTTC-AAAGATTCCGGCGCCGATTAGGTCC-GAGACTTTTTTTAGGTTCAAAGGTCCG--ATAGTTCGA--T---AG-CGCCAT----------------------AAGCTGTAA----A-AAAATTCTT--AAACTTTATTTG-ACATTTCA-CGTT-TTGAGG--CGTGACGTTAGAT--AATT----AATTG-ATTCA-TGT-CAAATGAAAAATGATTATCCAA-----AATTCA--TTACATTGTCCGAATT-CGTGGATCAGCAAGTAT-T---AA--------GATGGCATCGTAATCATAAAT-GAGC-TAAA-GCTAACTCATC----ACACAATTAAAT-ATA-TGGATTCGGAGAGA-ATGTTAT--TA-AT-GAAA-GAAAT-AG---TTTTGAG-CAGCTGATGAGAA--C-GCA-ATTAAAATGA--GTATTTTTTTTAA------CGTGGTAT-CTCAT-----CTGAT-ATT-T-ATGT-AAAGAA-------------------AAAGT-GAAAGGGGG------C-ACAA-CCGTCACTTATGCCCAC---AAACTAT-TT-GTG-----CCCCCCCTTCCAAAAAAAATAGAAGAGGGACGGTGCCCC--TCT-------CCGCTCCCACTTTTT-----GTCCTACGCCTGTGT-------TAAGTAT-AGTT----ATGTACAAAGTGGGCCATGTACACAA-TGATATTC--ATTT--AAGTTAGATCTTAAAA----G--AATTTAA-TCCA-AAT-------TAAATAAGCTAAACGAAATGCTGAAATAGTTA----------------TATGGG---GGCTGCTC-AC-ATCAT---AT---ACAATTACAACAATTAT
gi|10 : ggaatctttaaaaaataaaacgttatgggttaaccctcgggttttagccgttatatttgggcagcaagatgattttattttattcatttatctcaaggatgactttatctaaacgcatctaccactacttataaaaggggacgatgatgggcatcggcatgttaaaatgatggtaaatctaccgggcatttcaaaatatgtggggctcaagttccttggctgcatgtatacatgtgcctggtaaaaatttttgttttgcagtgaatttcttatagcatgtttctaatgtattagattatggtcctacgggttatttaaactaaaaaagtagtacaatgtataggcccataaccaagctataacgctattgttactattttctttcaataaatctgaacactgtgcataatgttaagtagagagcattgatttttcatacatacgttgcttttgcacaaaccacgaactcgtgcgatctgtaagggggggggggggtgtttcgcaattaccaaaatccttggctttgtgcgctaaggagattatactgatttaatgaagcagtctttgaaatattggacatacgattgttatatcttccattttcaaattacagtatgcataattatatgtgattataattgcaaatgctttcttcatactcaatatattcacatcatagcaacaagctgctgaaaatgcatcaatatgtcatacaaagtttactgtttaaaactatcatattttgccgttcatacgtggaaactaaccccggaaacgaatattagacagtaaaatagtaagatttattcttccaccgattgtccagctttgactaaaaatttaggatagagcgtttacaagagatacATTTTCTGAG-GTCAATTAAAGTTTTAAATAAAA-CTCCAAACATATGGCAAAA----ATAA--T-----------ACC--CTTCTT----TTGGC-TGACGTCGCAAATGTTGGACGTAGCA-AATAGTAAC-TCCAAATG-GATCAAGG--------ATT--ATCTTAAACTATAC--TATGTTTAC--AT-ATGT-ATTATA-TATACG--TAAT---GCTT-CTTA-GAACAT-T-GATAATCATTTTA--ATGAAAGATAC----A-CCTAT--AAGAA-TTTTGA-GG-ATATTATTTAA-TTTGAACGCGGGGCCG-AATTGGACCCAAAcacgcttacgcaggtct
gi|11 : aAAAA-TATAA-TGGG-TGTAAAG--AT-ATATT--ATATA--CAACTCTGTATACA-TCGGCGATAT-----AATA--CG--ACATCGGA--------AAATT-TTTTGCTGTT---AGT---TGTGACCAGTTTGT-AAAATAAT--GTGTTACAT-------GTA-----TAAGA-TT----ATCAC---TTTCAAATCTTAT-ACTTCTTCT--TTATAT-----AAGTTTCA-TTCTCAATCCT-ATTGTCATA-AC--TTTTTCAAGTAT-CGGT-TTTTGGTTGTTGTTGTGTTTTTTTTGG-TTTTTGTTTTTGTT----Tgaaaccg
gi|12 : CAGTGGCGTGCT--GGGCTC---AAATAA-GTTAGGGGCACATAATTAAG--ACATT-NNNNN--NNNNN-NNNNNNNNNNNNNNN--NN-NNNNNNNNNNNNN-NNNNNNNNNNNNNNNNNN---N-NNNNNN--NNNNNNNNNNN-NNNNNNNNNNNNNNNNNNNCGG---ATTCCTA--------T--------TCAGAATGC-GG-TGAC-CATCC---G----A-TATT-C-A-----------------------CAG-GACTCTTT---AGTTCAAAGATCCA--ATAGTTCGA-AT---gtgttt
gi|14 : GTGCATTGCAAAGAAATTGATATCTTTGAC-TTGC---TGAGAA--CTACATATTAGAATTGA-GTATTTTTTTTACCA----T------CGTTTATTCTAACTGATTCTTCT-ATGTAAAAGAAATTTGTGTTTTTAAAAAACAAAGTGGGGGGGGGGGGTTTACAAGAA-ACACAACTTGTCC---C------C-ATCCT-G-GC----CCCCCgcttgataattaaga
gi|16 : ttgtC--TGTGTTCGTCAAT-TTGA-ATTATT-CATATGT--AAC---GCGTC-TTACGAATATGC-GATATTCATTT-ATGA--ATACATATGATTACTCTATGAAATAA-TTTTGA-AGAATATCATTTAC-TTTGGACGAGTGACC--AATT
gi|19 : TTA--AAGTTAGAT-T-AGAGCAATG-CAATATCA-TCCA-AATGCA------AATACTGCAAACGAAATGCTG-AATAAT
gi|2 : AGAAAGGGAGGAGGGGGGGGG--GGAACTCAGTGTATAATCCTAT--CCATA-TGG-CCTCCGGATGTGAATT-GAAGATATATAAAG--AAATTAATAA-AAAGTTCACAAAACTAATTTCTATTTGTGTAAATACGTATAACTAGTATTATATATATACATCTAT--TAAAGGAATTGTCATGTAAGTAATAC-TTATCTTTTCTTTAAAAAAAATAATAA-TGGG-TGTA-ATTCAA-TTAT----TTTA--CA-TTCTGTATATGTTTA-CGGCATGGGAAAA-------------ATAT-------AGATT-TTT----------AA------TGAC---T-TACC-ACAT------T------T-------C--------AAATCTT----ATCAC---T------TCCTATGA----TAAT--T---AT-----AAGTTTCA-TCCTCAATCCT-ATTGTCATA-AA--CTTTTCAAG-AT-C-GT-GT------------------TTTCCGG-TTGTT-TTTTTATG----TTTC--ACTAT--TACATGT--GA---ATGAAA---T------TCA-TGATCTTTTGTT--ACTTT----ATCCAAACGTAGCATATACTTAGTACGTGTATGTGTGTCTGTTAGCTG-AACACGCC--------------A-----AC--------GCACATTT---------AAAAAATGAAGAAAAGT-GTAT--ATA-TACACGTAATTCCAGTGGCGTGTT--GGGCTAAAAAAA-AA-GTCA-GGGGACAC----AAA--CTATCAATAAA--CCTGGATTAAAAGGGGGGGGGGACA-CAAACTTT-AAAA-AAAATT-GCAAAGCAATAAGCA-AAAGATAGAGAAAATAAGA-GATGGACATAGACCTAACACAA-CGATTCC-T--------A--------TCA-AATAC-GG-TGAC-CATCC-------TA-TATTTC-AAAGATCCTC--GCCGAT--ATTCCAGATACTTTTT---ACTTCAAAGGTCCG--ATAGTTCGA-AT---AGACGCCATTGATGTCGGAG-AA--------AAGCTGT----------AATTTTTTAAAACTTTATTTG-ACATTTAA-CG----------------CTTTAGAT--AA-T----AATTGAAATCCAT-T-CAAATGAAATATGATAAT-AAAAAAAGAATA-A--TTACCTTGTCAG-ATG-CGTGGATAAAGCAGGATA----AC--------GATG----CATCATCATAAATAGAGCAT-AACCCTAACTCGGT----ACAAAAAT-ATC-ACA-TGAA-TCGGAGAAATATGTTATAATACAT-GCAA-GAAAT-AATGTTTTTGA--CAAC---TGAGAAC-CTGCATATTAGAATTG--GTATCCTTTTGAT------T------C-CTCAT-----CTGACCATTCT-ATGT-AAAAGA-------------------AAAATGGGGAGGGGG------CCACAA-AC-CCACTTATGC---CAAAAAACGAT-TT-GTGCCCGTCCCCCCCTTCC---AAAAAT----GAGAGAC-GTGCCCCCGTCTGAAACACCCGCCCCC-CCGTTT-----GTCGA-CGCCCGTGTTACATC-TGAGTATAAGTTT--AATGTAGAAA-TGTGTCATGTACACAATTGATATTCCAGTTTTAAAGTTAGAT-TTAAAACAATGCCAATTTAA-TCCA-AATGTAATGCTGAATAGTTCAATCGAAGTAC----AT-GTAA----------------TAT--G---GGCTGCTCTGCAATCACTAAAT---ACAATTAC-ACAATTAT--TTTTAATCGTAGCTCTGTTAAAA-TGAATCATCTACAATTGATTACAAATTTCTAAGAGTCGATTAAAGTCT--AATAAAACCTCCAAACATTCGGCGAAA----ATAA-AT-----------ACC--CTTCTT----TT-ACGTGACGTCACA--------------CAGA---GTAACGTCAAAATGCAAACAACG---------TT--ATCTTAAACTATAC--TATATTTAC--AT-ATGT-ATTATA-CATACGT-TAAT---GCTTCCTTACGAAAATAT-GATAATCATTTTATAACAAAACATAC----ACCTTAT-AAGGAATTTTTGA-GGAATATCATTTAA-TTTGAATGCGGGGCCAAAATTGGACCCAAACG
gi|20 : A-TTATGAAGGAATATCGTTTAA-TTTGAATGCGGCGCCGAAATTGGCCCCAAGCGa
gi|21 : -TTTGAACGCGGGGCCGAAATTGGACCCAAAcacaaagtcctt
gi|3 : T-TT------------------TTTTTGG-TTTTT-GTTTTGTT----TTTTTAAC-AT--TA-ATC---GA---ATGAAA-T-T------TCA-TGATCTTTT--T--A-TTT----ATCAAAGTGCA--AT-TACTTA--A---GTATGTGTGCTT-TT-GCTG-AAC-CGCT--------------ATAGATACAGTAATAAGCACTTCGAAA------AAAAAATGAAGAAAAGTTGTAT--TTAATACACATAAACCCAGTGGCGTG--------------AA-AA-GTGA-GGGGGCAC----AA---CTATC-ATAAAG-TTTGG-TTAAAAGGGGGAGC---CA-CA--CTTTAAAAACAAAATTGGCAAAGCA-TA---ATAAAGA---AGAAAATAAGAAGATGGGCATAGAC-TAACACAG-TGTTTTTTT--------ACATATGTATCA-AATACTGG-TGAC-CACTCTATA---TA-TATTTC-AAACGATCGC--GCCGAT--AGTC-AGATACT-TCT---AGTTCAAAG-TCGA--ATAGTTGAA-AT---A--------TGA------AG-AAC-------AAGCTGTAATAAAA-AAAATTCTT--AA-CTTTATTTGGACATTTCA-CGTCATT--GG--AGTGACTT-AGAT--AA-T----AATGAAATTC--T-T--AAATGAA-TATGATTAT-CAA-----AATT-G--TTAC-TTGTC-G-ATGGCGTGGATCAGTCAGGATAT---ATAAGGGGGGGGGG----CG--ATTA-AAAT--AGC-T-AA-CCTAACTCG-T----GCAAAAAT-AATCATA-TGGATTCGAGGCAAT-TGTTATGGTACAT-GCAA-GAAAT-AATGTTTTTGAGACAGC---TGAGAAACCTGCATATTAAAATTGCAATATTTTTTTAACGTGGTAT------C-CTCAT-----CTGATCATTCTCATGT-AAAGAA-------------------AAAGTGGGGAGGGGG------CAGCAAGACGCCATTAATGC---C---AA-C-AT-TTTGTGC----CCCCCCCTTCC---AAAA-T----GAGGGAC-GTGCC----TCTG--GCACC---TCCC-TTTTTTTGGGGGGGGGGGGTCC---CTACGCCGTAAGTAT-AGTTTTAAATGTACAAA-TGTGACATGT-CACAATTGATATTC--ATTT--AAGTTAGAT-TTAAA-CAATG-CAATTTAAATTCAGAATG------TAAATAAC---AACGAAATGCTG-AATAGTTAAATTGAAGTAATAATATAT--ATTTGGCTGCTCTACAATCACTAAATTAGACAAT-AT-ACAATTATACTTTTAATCGTACCTCCATTAAACTTGAAT-ATCTACAATTGCTTAACACTTTCTGAGAGATAATTAAAGTTTTAAATAAAA-AT-CAAACATACGGCG-AA----ATAAGAT-----------ACC--CTTCTT----T--ACGTGA-GTCGCA--------------CA-A---G-AACGTC-AAATG-CACCAACG--------ATT--ATCTT-AACTATAC--TATGTTTAC---T-ATGTAATTATA-CATACGTAAAAT---GCTT-CTTACTGACATATGGATAATGATTTTTTAT-GAAAACTA-------CCTATGAAGGAA-TTTTGA-GGAATATCATTTAATTTTGAAAGCGGGGC--GAATTGGACCCaggaccaagt
gi|4 : ttAGAAAGGG----GGGGGGGGTCCGAAACGC------CAAACACCTT-ACATccagacaggagcctttaag
gi|5 : ggacacctttaaaacctttaaagtaatgagttcccctagattattttacgtatataatatttgtagcgagatgaattttaatttattttattcacatttattcaagggctcagttcgtcgtttcaaacttatatttctacatagtacacagcacctaccactaccataacaaggggaaggagtgatcgcataaataaaaattatggtaaatctacgacattctcaaataatgtggggccaagttccctagctgttgctacaatgtacacagtaatatatatgtgcctgtaaaagtttttgttttgcagaattactttacatgttttaatgtattagattatggtcctatatttaaaagtacattaaaacaactaccgaacactattggttactattttcttcattaaaatcgtggaacacgtgcatgttcaagtagagcatgatatgttcattcaatttagtagcgtgtgcataaaccaccaacccgtgcggatctAGAAAGGG----GGGGGGGGGTCGAAACAC------CAAACATATC-CT-TA-TGG-CCTCCGGATGTGAATTAGAAGATATATAAAATT-----GAT-ATATAGTT--CAAA-CTA--TTTTATTTGCGTAAATACGTATA--TA--------------------T--TAAAGGAATTGTCATGTAAGAAATA-ATTATCTTTTCTTTAAGAAAAA-A-TAA-TGGG-TGTACAT--AA-ATAT---ATACA--CA-ATCTGTTTATG-TTA-CGACATCGGAAAATA--C------CTGTAT-------AGATT-TTTTGCTGTT--G--T---TATGAC---TGTGTCAAAATAAT--GT------T-------CTA-----TAAGACTT----ACCACA--TTTCAAATCTTATCACTTCCTA---T---AT-----CAGATCCA-TTTCCAATCCTGATTGTCCTATAC--CTTTTCAAG-ATCCGGTCTT------------------TTTTTGGTTTGCA-TTTTTGTTTATCTTTC--AC-ATTCTACATCT--GATCCATGGAATTTT------TCA-TGATCTTTT--T--AC-TT----ATCC-AACGTAGCAT----TTATTA---GTATGTGTGCCT-TT-GCTG-AACACGCC--------------A-----AC--------GCACTTTT-TA------AAAAAATGAAG-AAAGT-GTAT--ATA-TACACATtgttgcgctttgacaaatccagggagattatagtgttataatgaagccatctttgaaatattggaattacgattgttcgatatcttcttccattttcaaattacataattacggtgattataatacaatgctttctttaatactcaatttttactttacaatagatagtgttcaaagtaattatgaatatgtcacgtgatctttactttttttatacaacaagatgctggaaaatacatcaattgttatataaaaagtcttactgtttaaactatctttatttcgccggtcaatggaaaactggtcgaaaacgaatatagaagtttatttccacgatactctttctgactaaagacatttagaaag
gi|6 : ccaccaactcgtgtgggtctTTAAGTAAAA-CTCAAAACATATGTCAAAATAAGATGA-ATTTTAATTTTTAATCGTCTTCTTCATGTTGATGTGACGTTGCA--------------TA-------AACATCAAAATG-ACACAATGTTAATATAATTTAGTTTAAAACTATATAGTGTATTTAC--ATCATAT-ATTA
gi|6 : aaaaaatatagtgcacgcttgACTATA---TA-GTGTAC--AT-GTAT--TTACATCATATAT-TAGTAAAGCCTCTTT-CGAACATAC-GATTATCATTTTCTGA--AAAGATAC----ACCCAGTGAAAGAA-TTTTGA-GAAGCATCATCGAA-TTTAGACGCTGGGCCGAATTTGGCCCCGAACGgtaaagcctctnactatatagtgtacatgtatttacatcatatattagtaaagcctctttcgaacatacgattatcattttctgaaaagatacacccagtgaaagaattttgagaagcatcatcgaatttagacgctgggccgaatttggccccgaacgtaccaagtcct
gi|9 : aaaaaatatagtgcacgcttgttaagtaaaactcaaaacatatgtcaaaataagatgaattttaatttttaatcgtcttcttcatgttgatgtgacgttgcataaacatcaaaatgacacaatgttaatataatttagtttaaaactatatagtgtatttacatcatatattagtaaagcctctnGG-GGTGGGGATACGCCAAACACAA-CGATTCCT---------A--------TCA-AATAC-GA-TGAC-CATTC---C---TA-TATTTCCAAAGG-------GTCGA---AGTCCAGCGACTCTCT---AGTTCAAAGGTCCGCCATAGTTCGACATTTCAG-CGTCATTGAC----CAGTGACTTAGATTAAACTGTAA----ATTGAATTCTT--taccaagtcct
gi|9 : TTCG-ACATTTCAGCGTCATT--GACCAGTGACTT-AGATTAAA-CTGTAAATTGAATTC--T-TTCCTATGAAATATAATCAT-TAA-----AATT-AATTTACCTTGTCAG-ATG-CGT-----AAGCGATATATGTAAC--------GATG-------CATCATA-----------------AACTCGGTCAAAAGAAAAAT--GT-ATAGTAGATTCGGAGAAATATGTtcctatgaaatataatcattaaaattaatttaccttgtcagatgcgtaagcgatatatgtaacgatgcatcataaactcggtcaaaagaaaaatgtatagtagattcggagaaatatgtg
6 sequences could not be aligned to this reference sequence:
Unaligned ( gi|7 ): ATGGTACATCTACCGTGGCTTCTCAATAATGTAGTGCTCGAAGTTCGCCTGTGTTGCTAACACAAGTATACAATGTGCTGTAAAAGTTTTTGTTTTGCAGAATTAATTTACACGTTTTAATGTATTAGATTATGTTCCTACGTGTATTTAAAAACTAAAAGTACATGTATGAAAGTATAAGCTATTTGCTAACTGATTTTCTTCAATAAATCGTGGAACACGTGCATACATGTATCAAGTAGAGGCAATGATTTTCATACATACGGAGGCCTTTTTGCCAACCACCACTCGCTCGTGGCGTATCTAGAAGGGGGGGGGGG
Unaligned ( gi|8 ): AAAATCATAAAACAAACACATTGTCGAAAGAAAGTAGGGGTAACGTCCCCCTGTTGCTACGTGCCTATAGAACAATTCTTGTTTGTACAGTCACCTTACATGTGTTAATTAATACTTCATGTGTACTGGAACGTGTTCTATTTCATTGTCCTATCAAGAAATACATGTAGCCATTATTTACTATTTTCATCCACAAATGCTCATGAAGTAAAGCACGACTTTCACACATGGAAGTCATTTACGCACGGCCCACCCACCGTCCACTTATAGCATTAGTGGCATGTGCACAAATCACGTACGGATCTAAAAGGGGG
Unaligned ( gi|13 ): GGGCTCAATTCTTCGCTTTAAGTTTGCATTCTACAATCATTCACTACTACCTTAAAAAATAATAAACTGAACTTCGCATGTAAAATAATGAAGCAACCACATTGTTAAAAGAATGTGGGGCCCAAGTTTCCCTGTTGCTACGTGCCTATAGAACAATTCTTTGATTTGATTGTACAATCACCTTAATGCGTTAA
Unaligned ( gi|15 ): GTTTATACAACAAGCTGCTAGAAAATGCATGAATTGTCATATAGAGTTTTATTATTTAAAAAACTATCACATTTCGCCGGTCATTGGAAACTGGTCGAAAATGAATACTAGACAGGTAAATTGATGATTATTTCCACGATGATTCTTTGACTAAATTGGACATTTAGCAAGATA
Unaligned ( gi|17 ): GGTAAATCTACGACATTCTCAAAATAATGTGCGGCCAAGTTCCCTAGCTGTTGCTACATGTACAATATATATATGTGTCTGTAAA
Unaligned ( gi|18 ): ACAATTGTTTGATATATCCTTCTTCCATTTTCAATTTACATAATTATCAGTGATTAATTTAATCATTTTCTTCATACTCAATT