lowQualScore : 111111111111111111111111111111111111111111111111111111111111111111111 111111111111111111111111111111111111111111111111111111111111111111111 22222222222222222222222222222222222222222222222222222
lowQualScore : 1 1 88888888888888888888 11111 22 2222 555555555 22 2222 22222222 2222222 111111 777777777777777777777777777777777777777777777777777777777777777777777 1 333333 222222 555 3333333333333 1111 000000000000000000000000000000000000000000000000000000000000000000000 111 222222 7777777777 22 1111111 22 9999999999999999999999999999999999999999 4444444444 111 1 6666666666666666666666666666666666 33333 1 33 1 1 33333333 55555555555555555555 333333 33 22 7777777777777 3 2 00000000000000000000000000000000000000000000000000000 44444444444444444 333333 5555555555 33333333333333 111 11111 44444444444444 1111 1111111 2222 777777777777777777777777777777777777777777777777777777 111111111 1111111111 111 666
lowQualScore : 6 6 0 0 3 77777777777777777777 66666 55 8888 999999999 99 5 5 5 8888 00000000 3333333 444444 000000000000000000000000000000000000000000000000000000000000000000000 7 0 5 00 5 333333 111111 44 2 5 222 0000000000000 0000 5 111111111111111111111111111111111111111111111111111111111111111111111 8 2 66 000 0 999999 6666666666 33 2 9 7 55 2 2222222 33 33 4 3 0000000000000000000000000000000000000000 0 22 3 5555555555 111 4 0 0 8888888888888888888888888888888888 99999 6 55 6 6 6 3 88888888 6 6 22222222222222222222 444444 8 55 77 4444444444444 7 4 4 8 4 44444444444444444444444444444444444444444444444444444 7 55555555555555555 66 66 000000 3 44 4444444444 2 6 8888888 2 22222222222222 22 3 22 111 44 6 66666 55 88 1 1 9 1 88888888888888 4444 2 2 4 2222 2 1111111 1111 555555555555555555555555555555555555555555555555555555 44 444444444 9999999999 3 666 666 44 3 000 3
lowQualScore : . . . . . .................... ..... .. .... ......... .. . . . .... ........ ....... ...... ..................................................................... . . . .. . ...... ...... .. . . ... ............. .... . ..................................................................... . . .. ... . ...... .......... .. . . . .. . ....... .. .. . . ........................................ . .. . .......... ... . . . .................................. ..... . .. . . . . ........ . . .................... ...... . .. .. ............. . . . . . ..................................................... . ................. .. .. ...... . .. .......... . . ....... . .............. .. . .. ... .. . ..... .. .. . . . . .............. .... . . . .... . ....... .... ...................................................... .. ......... .......... . ... ... .. . ... .
lowQualScore : 0 0 0 0 2 11111111111111111111 77777 88 3333 000000000 33 7 7 7 7777 88888888 5555555 444444 777777777777777777777777777777777777777777777777777777777777777777777 1 1 7 33 7 444444 222222 55 2 0 555 4444444444444 6666 0 999999999999999999999999999999999999999999999999999999999999999999999 9 7 88 000 7 222222 2222222222 44 5 9 5 99 5 7777777 44 22 7 3 1111111111111111111111111111111111111111 6 77 2 7777777777 000 0 2 0 2222222222222222222222222222222222 00000 0 00 0 0 0 6 22222222 7 7 22222222222222222222 888888 8 11 66 8888888888888 2 4 4 9 4 11111111111111111111111111111111111111111111111111111 3 44444444444444444 11 00 111111 1 22 5555555555 2 7 5555555 0 00000000000000 33 3 33 111 00 7 77777 99 33 7 7 5 9 00000000000000 2222 0 1 4 6666 4 6666666 5555 999999999999999999999999999999999999999999999999999999 66 888888888 2222222222 3 999 222 66 3 666 3
consensus : NNNNNNNNNNNNNNNNNNNNNNNNTTCCAAAGTCAATAGGCCTAAATGTTT-TG-TTATACCTC----T------T------AT-----GTGGATATAAATG-ATACAAAAACAACAA----TTTTGAACTTTCTTCA-T------AGTAATGCATGT-ATA-AT-CAATT-GTAAT---AAAAAA-CAANT-ACAGGA--A--T-ATCT------GTTTTTTTT-ACGTTT----------A-----------A-----A-TT----CG-CT-GC-AG-CCACA-ATTTCAA-TCAATTGT-TCCTTCA-CTATATTGACG------AGTCATACC-AATTCACGGATAGTTA-CGAG--TTAC--TCC----GAATA-C---C-ACGANT---TA--------------------TAT--CAT-GA----TAGT----------GA--CATC-ACA--CTG---GTCCATAT---TGAAAACAC--GA---T--GTTGGA-C-CGGGC-GGTCCAAC--A-TC---GN--GTTTT--CAAT-GGACCGGCA-G--CG-GGGCCGAACATCGGGATTG-T-T--G-----T-C-TTTTTCTTGTGTTGAAT--TAGTGATATAGAG-ANGACATATA-G--G---A-TNA-ATGAC-AA-ATA--TGACGTCGTGTTTNTA--TCTTGGCGTGACCGTA-TAGGATATANCATAAGTC--CAAA--GCATG-CG-CCAC----AAA--C-TAGGA-CAAACCTA-ATGTGGGACAAACCTAGTTTA-TGATAGAACACTA-CAAGA-TTGTCGATATCCA-TTAAAACAT-GT-CTGT-AATCTA-CAA-CGTCT----AGACGG-AGTTTG--ACATGTCATTAC-------------TGAACATTGC--AATACA-AATCGTG-TT--TAT-ACGCG--A-A-GTTT-CG--CGTT--TA--TT--CGCGAAAGTT-T-CGCG-T-T---TAATC---GCG-G--N--AA--G-T--TN--CGCG--TTA-AT--N--CGCG--AA--GT-T-TNCGC-G----T--TAA----C----GCGA-AA-G-TT--C-GC-G--T--A-AT-T--CGCG-AA--G-T--TACGC---TATT---CG----GCAA-AGTTNCG-CGNAAT---TA--AC-GC------AAA-----ATTAAT-TTTTT-CT---CT--A-CGAAAATGA--GCTCAA-TGGGCTTTC
Reference ( gi|1 ) : GGCAGATTCTAGCTTGTTTTTTCTTTTCAAAGTCAATAGGTCTAAATGTTT-TG-TTATACC------G------T------AT-----GTGGATATAAATGGATACAAAAACAACAA----TTTTGAACTTTCTTCAGT------TGTAATGCATGTCATA-AT-CAATT-GTAAT---TAAAAA-CCATT-ACAGGA--A--A-ATCT------GTTTTGT---ATGTTT----------A------G----A-----AATT----CA-CT-GC-AG-C-ATA-A---CAA-TCAATTGT-TCCTTCA-C-ATAT-GACG------AGCCATATC-AA---ACGGATAGTTA-AGAG--TTAG--TCC----GAATA-C---C-ACGAAT---TA--------------------TAT--CAT-GA----TAAT----------AA--CATC-ACA--CTG---GTCCATAT---TGAAAACAC-AGAATGC--GTTGG--C-CGGAC-GGTCCAAC--A-TC---GA--GTTTT--CAATGGGACCGGCA-G--CG-AGGCGGAAC-TCGGGATT--T-T--G-----T-C-TTTTTCTTGTGTTGAAT--TAGTGAT-TAGAG-ATAACATATA-G--G---A-TGA-ATAAC-AA-ATAATTG--GTCCTGTTTT----TCTT-GCGTGACCGTA-TAGGA-ATAACATAAGTC--CAAG--GCATG-TG-C-AC----AAA--C-TAGGA-CAAACTTA-ATGTGGGACAACCGGAGTTTAATGATAGAA-AC-A-CAAGAGTTGTCGATATCCATTTAAAACAT-GT-CTGTGAATCTA-C-A-CG-CTCGCAAGACGGAAGTTTGTAACATGTCATCACGTTCGACACGAAACGAGCATTGC--AATACA-AATCGTGATT--TAT-ACGCG--A-C-GTTT-CG--CGTT--TACCTT--CGCGAAAGTT-T-CGCG-T-T---TAATT---GCA-G--C--AA--G-T--TA--CGCG--TTA-AT--T--CGCG--AA--GT-T-TCCGC-G----T--T------C----GCGA-AA-G-TT--C-GC-G--T--A-AT-T--CGCG-AA--G-T--TACGC---TATT---CG----GCAA-AGTTACG-CGAAAT---TA--AC-GC------AAA-----ATTAAT-TTTTC-CT---CT--A-CGAAAATGAAGACTCAA-TGGGCTTTC
gi|12 : TTCCAAAGTCAATAGGCCTAAACTTTT-TG-T-ATACC------TCCACATT------AT-----GTGGATATAAATG-ATACAAAAACAACAA----TTTTGAACTTTCTTCA-T------AGTATTGCATGT-ATT-AT-CAATT-GTAAT---GAAAAA-CAATT-ACAGGGTTATTA-ATTT-------TTTTTT---AC-TTT----------A------ATCACA-----ATTT----CACCT-GC-AGCC-ATA-A---ACA-TCAATTGT-TCCTTCA-C--TAT-
gi|7 : agaAGTCAATAGGCTTAAATGTTT-TG-TTATACC------T------TCACATTAT-----GTGGATATAAATG-ATACAAAAACAACAA----TTTTGAACTTTCTCCA-T------GGTAATGCATGT-ATA-AT-CAATT-GTAAT---AAAAAAACTAC--ACAGGA--A--T-ATCT------GTAATTT---ATGTTT------------------------------TA----CT-TT-G--AT-C-ACA-ATTTCAA-TCAATTGT-TCCTTCG-CTAT-T-GATG------AGTCATACC-AATTCAGGAATAGTTA-CAAG--TTAC--TCC----GAATA-C---C-A--ACC---TA--------------------GTT--TAT-GA----TAG-----------AA--CACT-ACA--tg
gi|5 : atgaatattgaatctttcgtgcattcgatttaaaagcgacacagggtacacgattgctagtgttgtaaataaaatgtgaaattatcgagacgagtcgaacattggcctagtgtctcgcaagtgtactcctcattttagcaggtcgaaggcattccaacattttggttcgaggttctatcatagcgcatgttgcccgagacttcAGTCAATAGGCCTAAATGTTT-TG-TTATACCTCCACAT------T------AT-----GTGGATATAAAT-GATACAGAAACAACAA----TTTTGAAC-TTCTTCA-T------GGTAATGCATGT-ATA-AT-CAATT-GTAATAAAAAAAAA-CTA-T-ACAGGA--A--T-TTCT------GTTTT-T---ATGT--------------------------------TT----TA-CT-TT-AATC-ACA-ATTTCAA-TC-ATTGT-TCC-TCA-CTAT-T-GATG------AGTCATACC-AATTCACGGATAGCTA-CAAG--TTAC--TAC----AAATA-C---C-A--ACC---TA--------------------GTT--TAT-GA----TAG-----------AA--CACT-ACAAGATT---GTCGATATCCATTAAAACAaggttgtcg
gi|2 : agaattgacattatatcagattagcacgttagttacacgggtagattagagaatgaatattgaatctttcatgcattcgattaagcgacacgaggtacacgattgcaagtgttgtaaatacatgtaaaaatgtgaaattgtcgaaacgagtcgaacattggcgtagtgtctcgcaagtgtactcctcattttagcaggtcgaaggcattccaacatttggttcgagggtctatcatagcccatgttgccgagacttcTGTTTCTGATTATACCTC----A------C------ATTAATGGTGGAAATAAATTGATACAGAAACAACAAATAATTTTGAACTTTCTTCAATAGTCAACGTAATGCA----ATA-AT-CAATT-GTAATA--TAAAAA-AAAAT--CAGGG--A--ATATCT------GTTTTTTTTTGTGTTT----------ACTTCTCA----ATCACCAATTTCGACG-CT-GCGAG-CCATA-A---CAAATCAATTGTCTTCCCCATC-CTATTGACGTT----A-TCACATCCAATTCACGGATAGTTATAGAGGTTTACACTCT----GAATA-CAGCT-ACGAGT---TAAAT-----------------TATTACAC-GAGATTTAATTAGTTCATGAAATGCATCCATA--CTG---GTCAA-AT---TGAAAACACTGGAAT----GTTGA--A-CGGGCGGGTCCAAC--A-TC---GT--GTTTT--CAATG---CCGGCATGTCCGTGGGC-GAACATGAGGATT--TATTGG-----TAT-TTTTTCTTGTGGTGAATA-TA-TGA---AGAG-AAGATATATA-GGCG---ATTTA-ATGAC-AA---GATTG--ATCGTGTTTTTA--TCTTGGCATGA-CGTA-TAGGA-A-ACCATAAGTCCGCATA--GCATG-CACC-AT----AAAACC-TAGGACCAAACC---GTACAGGGCAAACCTACTTT-----TGGA-------------TTGTCGATATCAA---AAAACAT-GTCCTGGTAATCTAGC-A--A-CTCT--AGACGG-AGTTTA-GAGATGTCAT------------GAACTGAACATTGC--A----------GTGTTA--TAT-ACGCGGAA-C-GTTT-CG--CGTT--AATCCA--CACGAAATTT-T-CGCC-G-T---TATTC---GCA-A--A--AA--G-T--TA--GCCG--TTAGAT--G--TGCG--AA--AC-T-T-TGC-G----T--tgtctgtaatctacaatgtctagacggagtttgacatgtcattactgaacattgcaaaat
gi|3 : ------T------AT-----GTGGAACTAAATG-ATACAAAA-CAACAAATCATTTTGAACTTTCTTCA-T------AGTCACGTATGCAATACATACAATTTGTAAT---AAAAAA-AAAT---CAGGA--A--T-ATCT------GTTTTTTTT-GTGTTTCTTGTTAATCA------C----AC----AATTTCGACG-CT-GCTAG-CCATACA---CAAATCAATTGT-TTCT-CA-T-CTATTGACGTTCATCATCCA-ATT-CA---ACGGATAGTTATAGAG--GT----TCCTACTGAATA-CG--C-ACGAGT---TAATTATTACAGAGATTTAATTTAT--CAT-GA-----AAT----------GGG-CATCCATAA-CTG---GTCAA-AT---TGAAAACAC-TGGATAT--GTTGA--C-CGGGCGGGTCCAAC--A-TC---GT--GTTTT--CAATGGCA-CGGCT-GC-CG-GAGC-GAACATGAGGATTA-T-T--GGTAATT-G-TTTCTTGTGTGTTGAATACTA-TGAG-TAG-G-AAGAGATATAGG--G---A-TTT-ATGAC-AAGATA--TG--A-CGTGTTTTTAAGTCTTGGCATGA--GTATTAGGG-AAACCATAAGTC--C-----GCATGATG-C-ACCAATAAAC-C-TAGGACCAAACCGACA---GGGACAAACCTATCTTTATGA-----------------TTGTCGATATCCA-AAAAAACATGGT-CTGGTAATCTA-C-A--A-CTCT--AGACGAGAGTTTG--AGATGTCA------TTGA-ACTGAACG---ATTG---A----------GTG-TT--TA--ACGCGGAA-C-GTTT-CG--CGTT--AATC----CACGAAATTT-T-CGCG-T-T-----ATTC--GCA-A--A--AA--G-T--TA--AGCG--TTAGAT--G--TGCG--AA--CT-T-Taataacaaccgcgagaaaaataattttttttgttctacgaaaatgagttaagggcttttcgt
gi|4 : cat------T------AT-----GTGGATATAAATG-ATACAAAAACAACAA----TTTTGAACTTTCTTCA-T------AGTATTGCATGT-ATA-AT-CAATT-GTAAT---AAAAAA-CAACTAACAGGA--A--T-ATCTGGGGGGGTTTTTTTTAATGT--------------------------------TT----TA-CT-TT-AATC-ACA-ATTTCAA-TCAATTGT-TCCTTCA-CTAT-T-GACG------AGTCATACC-AATTCACGGATAGTAA-CGAG--ATAC--TCC----GAATACC---C-ACTAAT---T---------------------------AT-GA----TAG-----------AA--CACG-GCA---TGATTGTCGATATCCATTAAAACAT-Aagcgtaataacaccgcgagaaaactaattttttttgttctacgaaaatgagttcaatgggcttt
gi|29 : agagttgacattatatcagattagcacgttcgttacgcgggaagattagaacacgaatattgaatctttcgtgcattcgattaagcgacatggggtacacaattgcaagtgttaaataaaatatgaaattgtcaaaacgagtcgaacattggcctagtgtctcgcaagtgtactcctcattttagcaggccgaaggcattccaacattttggttcgaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatATG-CATA-AT-CAATT-GTAAT---AAAAAA-CAAAT-ACAGGA--A--T-ATCT------GTTTTtctgtaatctataacgtctagacggagtttgacatgtcattactgaacattgcaaaatataaaacgcgaaagtttcgcgtttattcgcgaagtttacgcgttat
gi|8 : tAAAAA-CAATT-ACAGGA--T--T-ATCT------TTTTTTT---ACTTTT----------A------TCAC-A-----ATTT----CA-CCAGC-AG-CCATA-AA--CAACTCGATTGT-TCCTTCA-C--TATTGATG------ACCAATTCC-A------GGATAGTTA-CGAG--TTAT--TCC----GAATA-C---CCACGAATAGACA--------------------T-T--CAT-GA-----AAT----------GA--CATC-ATA--CTG---GTCCAT-----TGAAAACAC--GA---T--GTTGA--C-TGGGC-GTTCCAAC--A-TC---GA--GTTTT--CAAT-GGACCGGCA-GTCCA-AGGC-GAACATCGGGATTA-T-TG-G-----T-C-TTTATCTTGTGTTGA-----AGT-ATATAGAGAATAACATACA-G--G------GATATAACAAA-ATA--TGACGTCGTGTTTA----TCTT-GCGTGA-CGTA-TAGGATATAGCATAAGTC--CAA---ACATG-TG-CTAC----AGAC-C-TAAGA-CAAATCT--ATGTGGGACAAACCTAGTTT-ATGATAGAACACTA-CAAG----------------TTAAAATAT-GT-CTGTG-ATCTA-
gi|28 : -ATATTGACG------AGTCATACC-AATTCACGGATAGTTA-CGG----TAT--TCC----AAATA-C---C-
gi|6 : gctataT-GACG------AGTCATACC-AATTCACGGATAGTTA-CGG----TAT--TCC----AAATA-C---CTACGAAT---AA---------------------AT--CATTGA-----AAT----------GA--CATC-ATA--CTG---GTC---AT---TGAAA-CAC--GA---T--GTTGA--C-TGGGC-GGTCCAAC--A-TCA--GA--GTTTT--CAATGG-ACCGGCA-GTCCA-AGGCG-AACATCGGGATT--A-TCGG-----T-C-TTTATCTTGTGTTAAAT--TA-TA---TAGGA-ATAACATATA-G--GGATA-TAA-AAAAA-AA-ATA--TGACGTCGTGTTTA----TCTT-GCGTGAC-GCAATAGAT-ATAACATAAGTC----AGCAGCATG-TG-CCAC----AAA--CCTA-----AAATCTT-ATGTGGGACAAACCTAGTTTA-TGATAGAA-CT-A-CAAAGATTGTCGATATCCA-TTAAAACAT-GT-CTGT-AATCTA-C-A--A-CTT-CTAGACGG-AGTTTG--ACATGTCATTAC-------------TGAACATTGC--AATACA-AATCGTG-TT--TAT-ACGCGCAA-A-GTTTACG--CGTT--AA--TA--CGCAAAAGTT-TACGCG---T---TAATTC--GC--G--A--AA--G-T--T---TGCG---TA-AT--ta
gi|24 : tat--CGTC-AAA--CTG---GTCCATG-----GAAAACAT----------GTTGGA-C-CAGGC-AGTCCAAC--A-TT---GA--GTTTT--CAAT-GGACCAGCA-G--T-----CCGAACATCAGGATTG-T-T--G-----aacgaaaatatttttttttcttaacgaaaatgagctcaatgggctttcg
gi|23 : TC-AAA--C-A---GTCCAT-----TGAAAACAT--GA---T--GTTGGA-C-CAGGC-GGTCCAAC--A-TC---AA--GTTCT--CAAT-GGACTGGCA-G--
gi|23 : gA--CTGCCAGTCCAT-----TGAGAACTT--GA---T--GTTGGA-C-CGCCT-GGTCCAAC--A-TC---AT--GTTTT--CAATGGtccaaacatctggattgttg
gi|19 : gtcaaacagtA--CCG---GTCC--AT---TGAAAA-------------GTTGGA-C-CGGGC-GGTCTAAC--ACTC---GG--GGTCTAACATTGAGATT-TCA-------------AACATCGGGA-T--T-G--G-----A-C-TTTTTCTTGCAT----T--CAGTGATATAGccaaacatctggattgttg
gi|6 : aa--CCG---GTCCAT-----TGAAAACTC-TGA---T--GTTGGA-C-CGCCC-AGTC-AAC--A-TC---GT--G-TTT--CAAT--GACCAGTA-
gi|8 : tattgacgagtcataccaattcacggatagttacggtattccaaatacctacgaataaatcattgaaatgacatca--CCG---GTCCAT-----TGAAAACTC--GA---T--GTTGG--AACGCCC-AGTC-AAC--A-TC---GT--GTTTT--CAAT-GGACCAGTA-cagtccaaggcgaacatcgggattatcggtctttatcttgtgttaaattatataggaataacatatagggatataaaaaaaaaatatgacgtcgtgtttatcttgcgtgacgcaatagatataacataagtcagcagcatgtgccacaaacctaaaatcttatgtgggacaaacctagtttatgatagaactacaaagattgtcgatatccattaaaacatgtctgtaatctacaacttctagacggagtttgacatgtcattactgaacattgcaatacaaatcgtgtttatacgcgcaaagtttacgcgttaatacgcaaaagtttacgcgttaattcgcgaaagtttgcgtaataacgaaaatatttttttttcttaacgaaaatgagctcaatgggctttcg
gi|24 : aaaaacaattacaggattatcttttttttacttttatcacaatttcaccagcagccataaacaactcgattgttccttcactattgatgaccaattccaggatagttacgagttattccgaatacccacgaatagacattcatgaaatgacatca--CTG---GTCCAT-----TGAAAACTC-A--ATG----TTGG--A-CTGCCTGGTCCAAC--A-T--------GTTTT--CCAT-GGACCAGcagtccaaggcgaacatcgggattattggtctttatcttgtgttgaagtatatagagaataacatacagggatataacaaaatatgacgtcgtgtttatcttgcgtgacgtataggatatagcataagtccaaacatgtgctacagacctaagacaaatctatgtgggacaaacctagtttatgatagaacactacaagttaaaatatgtctgtgatcta
gi|17 : cgtcaaaG---GTCCAC-----TGGAAACAT--GATTAT--G--GA--C-CGGGT-GGTCCAAC--A-TC---GA--CTTTT--TAAT-TTACCTGCA-G--T-----CCGAACATGGGGATTG-T-T--G-----GAC-TTTTTcagtccgaacatcaggattgttg
gi|2 : aatcAT---TGAAAACAC--GA---T--GTTGGA-C-CCGCC-CGTTCAAC--A-TTCCAGT--GTTTT--CAATTTGACCAGTA-ggttattccattatgtag
gi|3 : tgtttctgattatacctcacattaatggtggaaataaattgatacagaaacaacaaataattttgaactttcttcaatagtcaacgtaatgcaataatcaattgtaatataaaaaaaaatcagggaatatctgtttttttttgtgtttacttctcaatcaccaatttcgacgctgcgagccataacaaatcaattgtcttccccatcctattgacgttatcacatccaattcacggatagttatagaggtttacactctgaatacagctacgagttaaattattacacgagatttaattagttcatgaaatgcatccaAT---TGAAAACAC--GA---T--GTTGGACC-CGCCC-GGT-CAACATA-TC---CAGTGTTTT--CAATTTGACCAGgccggcatgtccgtgggcgaacatgaggatttattggtattttttcttgtggtgaatatatgaagagaagatatataggcgatttaatgacaagattgatcgtgtttttatcttggcatgacgtataggaaaccataagtccgcatagcatgcaccataaaacctaggaccaaaccgtacagggcaaacctacttttggattgtcgatatcaaaaaacatgtcctggtaatctagcaactctagacggagtttagagatgtcatgaactgaacattgcagtgttatatacgcggaacgtttcgcgttaatccacacgaaattttcgccgttattcgcaaaaagttagccgttagatgtgcgaaactttgcgtaataacaaccgcgagaaaaataattttttttgttctacgaaaatgagttaagggcttttcgt
gi|18 : cattatgtggaactaaatgatacaaaacaacaaatcattttgaactttcttcatagtcacgtatgcaatacatacaatttgtaataaaaaaaaatcaggaatatctgttttttttgtgtttcttgttaatcacacaatttcgacgctgctagccatacacaaatcaattgtttctcatctattgacgttcatcatccaattcaacggatagttatagaggttcctactgaatacgcacgagttaattattacagagatttaatttatcatgaaatgggcatccataaGAATTCATGTTGGA-C-TGGGC-GGTCCAACA-A-TC---AA--GGTTT--TAAT--GACC-ACA-G--T-----CCCAACATCGGGATTGCT-G--G-----A-CGCTTTTCTTGTATCTAAT--TAggcacggctgccggagcgaacatgaggattattggtaattgtttcttgtgtgttgaatactatgagtaggaagagatatagggatttatgacaagatatgacgtgtttttaagtcttggcatgagtattagggaaaccataagtccgcatgatgcaccaataaacctaggaccaaaccgacagggacaaacctatctttatgattgtcgatatccaaaaaaacatggtctggtaatctacaactctagacgagagtttgagatgtcattgaactgaacgattgagtgtttaacgcggaacgtttcgcgttaatccacgaaattttcgcgttattcgcaaaaagttaagcgttagatgtgcgaactttagcgtaataacaccgcgagaaaactaattttttttgttctacgaaaatgagttcaatgggcttt
gi|19 : caacgatccattGT--GTTAGA-C-CGCCC-GGTCCAAC--------------TTTT--CAAT-GGACCGGta
gi|10 : aaa-GCGTGAC-GTA-TAGGATATAACATAAGTC--CAAA--A-ATG-TG-C------------C-----A-CAAACCTA--TGTGGAACAAACATTGTTTA-TGATAGAACACTA-CAAGA-TTGTCGATATCCA-TTATAACAT-GT-CTGT-AATCTA-TAA-CGTCT----AGACGG-AGTTTG--ACATGTCATTAC-------------TGAACATTGC--AATACA-AATCGTG-TT--TAT-ACGCGA-A-A-GTTA-CG--CGTT--TA--TT--CGCAAAAG-T-T-CGCG-------TAATA---AC--G--C--AA--A-T--Ttcggggtctaacattgagatttcaaacatcgggattggactttttcttgcattcagtgatatag
gi|9 : --GCATG-CA-CCAT----AAA--CCTAGGA-CAAACCTA--CATGGGACAAACCTACTTTA-TGAT-----------------TGTCGATATCCA---AAAACAT-GT-CTGT-AATCTA-C-AACGTCT----AGACGGA-GTTTG--AGATGTCATTAC-------------TGAACATTGC--AA---------GTG-TT--TAT-ACGCG--AAC-GTTT-CG--CGTT--AATC----CACGAAATTT-T-CGCG-T-T---TATTC---GCA-A-----AA--G-T--TA--CGCG--TTA-AT--T--TGCG--AA--AC-T-TTCGC-G----TAATAA----C----GCGA-AA-ttttttttctctacgaaaatgagctcaatgggctttcg
gi|7 : CAACCT-AGTTTA-TGATAGAACACTA-CAAG-GTTGTCGaataattttttttgtctacgaaaatgagttcaatgggctttc
gi|5 : atgaatattgaatctttcgtgcattcgatttaaaagcgacacagggtacacgattgctagtgttgtaaataaaatgtgaaattatcgagacgagtcgaacattggcctagtgtctcgcaagtgtactcctcattttagcaggtcgaaggcattccaacattttggttcgaggttctatcatagcgcatgttgcccgagacttcagtcaataggcttaaatgttttgttataccttcacattatgtggatataaatgatacaaaaacaacaattttgaactttctccatggtaatgcatgtataatcaattgtaataaaaaaactacacaggaatatctgtaatttatgttttactttgatcacaatttcaatcaattgttccttcgctattgatgagtcataccaattcaggaatagttacaagttactccgaatacCAACCT-AGTTTA-TGATAGAACACTA-CAAGA-TTGTCGATATCCA-TTAAAACAT-GT-CTGT-AATCTA-CAA-TGTCT----AGACGG-AGTTTG--ACATGTCATTAC
gi|11 : agaattgacattatatcagattagcacgttagttacacgggtagattagagaatgaatattgaatctttcatgcattcgattaagcgacacgaggtacacgattgcaagtgttgtaaatacatgtaaaaatgtgaaattgtcgaaacgagtcgaacattggcgtagtgtctcgcaagtgtactcctcattttagcaggtcgaaggcattccaacatttggttcgagggtctatcatagcccatgttgccgagacttcagtcaataggcctaaatgttttgttatacctccacattatgtggatataaatgatacagaaacaacaattttgaacttcttcatggtaatgcatgtataatcaattgtaataaaaaaaaactatacaggaatttctgtttttatgttttactttaatcacaatttcaatcattgttcctcactattgatgagtcataccaattcacggatagctacaagttactacaaatacAGTTTA-TGATAGAACACTA-CAAGA-TTGTCGATATCCA-TTAAAACAT-GT-CTGT-AATCTA-CAA-TGTCT----AGACGG-AGTTTG--ACATGTCATTAC-------------TGAACATTGCAAAATATA-AATtgaacattgcaaaat
gi|4 : aacctATGATAGAACAC-GGCATGA-TTGTCGATATCCA-TTAAAACAT-AT-CTGT-AATCTA-TAA-CGTCT----AGACGG-AGTTTG--ACATGTCATTAC-------------TGAACATTGCAAAATATA-AA--------------ACGCGA-A-A-GTTT-CG--CGTT--TA--TT--CGCG-AAGTT-TACGCG-T-T---nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntaacgcga
gi|22 : agagttgacattatatcagattagcacgttcgttacgcgggaagattagaacacgaatattgaatctttcgtgcattcgattaagcgacatggggtacacaattgcaagtgttaaataaaatatgaaattgtcaaaacgagtcgaacattggcctagtgtctcgcaagtgtactcctcattttagcaggccgaaggcattccaacattttggttcgaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnattatgtggatataaatgatacaaaaacaacaattttgaactttcttcatagtattgcatgtataatcaattgtaataaaaaacaactaacaggaatatctgggggggttttttttaatgttttactttaatcacaatttcaatcaattgttccttcactattgacgagtcataccaattcacggatagtaacgagatactccgaatacccactaattACATAATTATATTT--TAA-ATGGA--A-T-GTTT-CG--CGTTA-TAA-----CGCGAAAGTTATACGCG-T-T---T-ATT----CATG--A--AA--G-G--TT--CGCG---CA-AT--TAACGCA--AA--at
gi|2 : TCGCGGTTGTTATTACGCA--A-A-GTTT-CGCACATC--TAAC----GGCTAACTTT-T-TGCG--------AATA---ACG-G--CGAAA--A-T--TT--CGTG--TGG-AT--TAACGCG--AA--ACGT-TCCGC-G----T--a
gi|20 : tgtttctgattatacctcacattaatggtggaaataaattgatacagaaacaacaaataattttgaactttcttcaatagtcaacgtaatgcaataatcaattgtaatataaaaaaaaatcagggaatatctgtttttttttgtgtttacttctcaatcaccaatttcgacgctgcgagccataacaaatcaattgtcttccccatcctattgacgttatcacatccaattcacggatagttatagaggtttacactctgaatacagctacgagttaaattattacacgagatttaattagttcatgaaatgcatccatactggtcaaattgaaaacactggaatgttgaacgggcgggtccaacatcgtgttttcaatgccggcatgtccgtgggcgaacatgaggatttattggtattttttcttgtggtgaatatatgaagagaagatatataggcgatttaatgacaagattgatcgtgtttttatcttggcatgacgtataggaaaccataagtccgcatagcatgcaccataaaacctaggaccaaaccgtacagggcaaacctacttttggattgtcgatatcaaaaaacatgtcctggtaatctagcaactctagacggagtttagagatgtcatgaactgaacattgcagtgttatatTCGCG-TT--TAT-TTGCG--A-AAGTTT-TG--CGTT--TAA--T--CGCGGAAGTC-A-CGCG-T-A---TATTT---GCA-A--G--AA----T--TA--CGCG--TAT-AT--C--CTCGA-AA--GT-T-TCgaaaaataattttttttgttctacgaaaatgagttaagggcttttcgt
gi|14 : tttattctcctaaattt-ACGCG--A-A-AGTC-GG--GGTT--TA--TT--CGCGAAAGCT-T-CGCA-T-T---TATTC---GC--G--T--AA--G-T--TT--CGCG--TTATATA-A--CGCG--AA--
gi|9 : attaaaactgtttataaaacaagtattttgcgtgagaacgcggaattttcgaTTT-CG--CGTTATTAC------GCGAAAGTT-T-CGCA--------AATTAACGC--G--T--AA--C-T--TT--TGCG----A-ATAAA--CGCG--AA--AA-T-TTCGT-GGA--T--TAA----C----GCGA-AACG-TT--C-GC-G--T--A-caatgattattttttagctatgaaaagtcgctcaatgatgattt
gi|20 : gcatgcaccataaacctaggacaaacctacatgggacaaacctactttatgattgtcgatatccaaaaacatgtctgtaatctacaacgtctagacggagtttgagatgtcattactgaacattgcaagtgtttaTTT-CG--CGTT--TA--TT--TGCGAAAGTT-T-TGCG-T-T---TAATC---GCG-G-----AA--G-T--CA--CGCG--TAT-AT--T--TGCA--AG--AA-T-TACGC-GTATAT--C------C----TCGA-AA-G-TT--aataattttttttgtctacgaaaatgagttcaatgggctttc
gi|14 : tttattctcctaaatTT-CG--CGTTA-TA---TAACGCGAAACTT-A-CGCG-A-A---TAAAT---GCG-------AA--GCT--TT--CGCGA-ATA-AA--C--CCCG--A----C-T-TTCGC-G----T--T------C----G-AA-AA-T-TC--C-GC-G--T--tc
gi|3 : attaaaactgtttataaaacaagtattttgcgtgaga--CGCGAAAATT-T-CGTG-GAT---TAAC----GCG-A--A--AC--G-T--TC--CGCG--TTA-Acaatgattattttttagctatgaaaagtcgctcaatgatgattt
gi|4 : cattatgtggaactaaatgatacaaaacaacaaatcattttgaactttcttcatagtcacgtatgcaatacatacaatttgtaataaaaaaaaatcaggaatatctgttttttttgtgtttcttgttaatcacacaatttcgacgctgctagccatacacaaatcaattgtttctcatctattgacgttcatcatccaattcaacggatagttatagaggttcctactgaatacgcacgagttaattattacagagatttaatttatcatgaaatgggcatccataactggtcaaattgaaaacactggatatgttgaccgggcgggtccaacatcgtgttttcaatggcacggctgccggagcgaacatgaggattattggtaattgtttcttgtgtgttgaatactatgagtaggaagagatatagggatttatgacaagatatgacgtgtttttaagtcttggcatgagtattagggaaaccataagtccgcatgatgcaccaataaacctaggaccaaaccgacagggacaaacctatctttatgattgtcgatatccaaaaaaacatggtctggtaatctacaactctagacgagagtttgagatgtcattgaactgaacgattgagtgt--CGCGAAAGTT-T-CGCG-T-T---TATTC---GCG-------AA--GTT--TA--CGCG--TTA-ttattcgcaaaaagttaagcgttagatgtgcgaactttagcgtaataacaccgcgagaaaactaattttttttgttctacgaaaatgagttcaatgggcttt
gi|14 : agagttgacattatatcagattagcacgttcgttacgcgggaagattagaacacgaatattgaatctttcgtgcattcgattaagcgacatggggtacacaattgcaagtgttaaataaaatatgaaattgtcaaaacgagtcgaacattggcctagtgtctcgcaagtgtactcctcattttagcaggccgaaggcattccaacattttggttcgaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnattatgtggatataaatgatacaaaaacaacaattttgaactttcttcatagtattgcatgtataatcaattgtaataaaaaacaactaacaggaatatctgggggggttttttttaatgttttactttaatcacaatttcaatcaattgttccttcactattgacgagtcataccaattcacggatagtaacgagatactccgaatacccactaattatgatagaacacggcatgattgtcgatatccattaaaacatatctgtaatctataacgtctagacggagtttgacatgtcattactgaacattgcaaaatataaaa--CGCGAAAGT----CGGGGT-T---TATTC---GC--G--A--AA--G-C--TT--CGCA--TTT-AT--T--CGCGT-AA--GT-T-T-CGC-G----T--TATATAAC----GCGA-At
gi|22 : attaaaactgtttataaaacaagtattttgcgtgagaacgcggaattttcgaaGAATGTT-T-CGCG-T-TA--TAAC----GC--G--A--AA--G-T--TATACGCG--TTT-AT--T--CATG--AAAGGT-T-CGCGCAA----T--TAA----C----GCAA-AA-caatgattattttttagctatgaaaagtcgctcaatgatgattt
gi|14 : acataattatattttaaatgT-T-CGCG-T-TATATAAC----GC--G--A--AA--C-T--TA--CGCGAATAA-AT------GCG--AA--GC-T-T-------------T------C----GCGA-A----------------T--A-AA-C--CCCG-AC--T-T--T-CGC----GTT---CG------AA-AATTCCG-CG---T---TCTCAC-GC------AAA-----AT
gi|3 : attaaaactgtttataaaacaagtGTG-T-T---TAAC----GCG-G--A--AC--G-T--TT--CGCG--TTA-AT--C--CACG--AA--AT-T-TTCGC-GTTA-T--T------C----GCAAAAA-G-TT-------------A-A------GCG-------T--TA-GA---TGT----------GCGA-ACTTTAG-CGTAAT----A--AC-ACCGCGAGAAA-----ACTAAT-TTTTT-TTGTTCT--A-CGAAAATGA--GTTCAA-TGGGCTTTcaatgattattttttagctatgaaaagtcgctcaatgatgattt
gi|9 : cattatgtggaactaaatgatacaaaacaacaaatcattttgaactttcttcatagtcacgtatgcaatacatacaatttgtaataaaaaaaaatcaggaatatctgttttttttgtgtttcttgttaatcacacaatttcgacgctgctagccatacacaaatcaattgtttctcatctattgacgttcatcatccaattcaacggatagttatagaggttcctactgaatacgcacgagttaattattacagagatttaatttatcatgaaatgggcatccataactggtcaaattgaaaacactggatatgttgaccgggcgggtccaacatcgtgttttcaatggcacggctgccggagcgaacatgaggattattggtaattgtttcttgtgtgttgaatactatgagtaggaagagatatagggatttatgacaagatatgacgtgtttttaagtcttggcatgagtattagggaaaccataagtccgcatgatgcaccaataaacctaggaccaaaccgacagggacaaacctatctttatgattgtcgatatccaaaaaaacatggtctggtaatctacaactctagacgagagtttgagatgtcattgaactgaacgattgaGTG-T-T---TA--T---AC--G--C--GAACG-T--TT--CGCG--TTA-AT--C--CACG--AA--AT-T-TTCGC-G----T--TTATT--C----GCAA-AA-G-TTA-C-GC-G--TT-A-AT-T--TGCG-AA--A-C--T---------TT---CGC---GTAA---TAACG-CGAAA-----A--AT-----------A-----ATT--T-TTTTT-GT---CT--A-CGAAAATGA--GTTCAA-TGGGCTTTC
gi|14 : gcatgcaccataaacctaggacaaacctacatgggacaaacctactttatgattgtcgatatccaaaaacatgtctgtaatctacaacgtctagacggagtttgagatgtcattactgaacattgcaaG-T-T---TA--T---AAA-A--C--AA--G-TATTT--TGCG--TGA-GA--A--CGCG--GA--AT-T-TTCGA-A--------------C----GCGA-AA-G--T--C-GG-GGTT--T-AT-T--CGCGAAA--G-C--TTCGCATTTATT---CGC---GT-A-AGTTTCG-CGTTATA--TA--AC-GC------GAACAATGATT-AT-TTTTT-AG---CT--A-TGAAAA-GTCG-CTCAA-TG
gi|22 : attaaaact-T-T---TAAAT---G---G--A--AT--G-T--TT--CGCG--TTA-TA--A--CGCG--AAA-GT-TATACGC-G----T--TTATT--C----ATGA-AA-GGTT--C-GC-G--C--A-AT-TAACGCA-AA--atgattt
gi|6 : acataattatatATT---GCA-ATAC--AA--A-T------CGTG--TTT-AT--A--CGCGCAAA--GT-T-TACGC-G----T--TAATA--C----GCAA-AA-G-TTTAC-GC-G--TT-A-AT-T--CGCG-A--------------------------------A-AGTT-TG-CGTAAT----A--AC-G-------AAA-----AT-ATT-TTTTT-TT---CTTAA-CGAAAATGAG--CTCAA-TGGGCTTTCa
gi|10 : tattgacgagtcataccaattcacggatagttacggtattccaaatacctacgaataaatcattgaaatgacatcatactggtcattgaaacacgatgttgactgggcggtccaacatcagagttttcaatggaccggcagtccaaggcgaacatcgggattatcggtctttatcttgtgttaaattatataggaataacatatagggatataaaaaaaaaatatgacgtcgtgtttatcttgcgtgacgcaatagatataacataagtcagcagcatgtgccacaaacctaaaatcttatgtgggacaaacctagtttatgatagaactacaaagattgtcgatatccattaaaacatgtctgtaatctacaacttctagacggagtttgacatgtcattactgaacATT---GCA-ATAC--AA--A-T------CGTG--TTT-AT--A--CGCG--AA--AG-T-TACGC-G----T--TTATT--C----GCAA-AA-G-TT--C-GC-G--T--A-ATAA--CGCA-AA--T-T--Tg
gi|4 : gcgtgacgtataggatataacataagtccaaaaatgtgccacaaacctatgtggaacaaacattgtttatgatagaacactacaagattgtcgatatccattataacatgtctgtaatctataacgtctagacggagtttgacatgtcattactgaac--AA--G-T--TT--CGCG--TTT-AT--T--CGCG--AA--GT-T-TACGC-G----T--T------tttttttctctacgaaaatgagctcaatgggctttcg
gi|2 : agagttgacattatatcagattagcacgttcgttacgcgggaagattagaacacgaatattgaatctttcgtgcattcgattaagcgacatggggtacacaattgcaagtgttaaataaaatatgaaattgtcaaaacgagtcgaacattggcctagtgtctcgcaagtgtactcctcattttagcaggccgaaggcattccaacattttggttcgaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnattatgtggatataaatgatacaaaaacaacaattttgaactttcttcatagtattgcatgtataatcaattgtaataaaaaacaactaacaggaatatctgggggggttttttttaatgttttactttaatcacaatttcaatcaattgttccttcactattgacgagtcataccaattcacggatagtaacgagatactccgaatacccactaattatgatagaacacggcatgattgtcgatatccattaaaacatatctgtaatctataacgtctagacggagtttgacatgtcattactgaacattgcaaaatataaaacgcgaGTG--TTATAT--A--CGCG--GAACGT-T-TC-GC-G----T--TAATCCAC----ACGA-AA-T-TTT-C-GCCG--T--T-AT-T--CGCA-AAAAG-T--TA-GC---CGTT---AGATGTGCGA-AACTTTG-CGTAATAA-CA--ACCGCGAG---AAA-----AATAAT-TTTTT-TTGTTCT--A-CGAAAATGAG---TTAA--GGGCTTTat
gi|22 : tgtttctgattatacctcacattaatggtggaaataaattgatacagaaacaacaaataattttgaactttcttcaatagtcaacgtaatgcaataatcaattgtaatataaaaaaaaatcagggaatatctgtttttttttgtgtttacttctcaatcaccaatttcgacgctgcgagccataacaaatcaattgtcttccccatcctattgacgttatcacatccaattcacggatagttatagaggtttacactctgaatacagctacgagttaaattattacacgagatttaattagttcatgaaatgcatccatactggtcaaattgaaaacactggaatgttgaacgggcgggtccaacatcgtgttttcaatgccggcatgtccgtgggcgaacatgaggatttattggtattttttcttgtggtgaatatatgaagagaagatatataggcgatttaatgacaagattgatcgtgtttttatcttggcatgacgtataggaaaccataagtccgcatagcatgcaccataaaacctaggaccaaaccgtacagggcaaacctacttttggattgtcgatatcaaaaaacatgtcctggtaatctagcaactctagacggagtttagagatgtcatgaactgaacattgcaG--AAT-GT-T-TC-GC-G----T--TATAA--C----GCGA-AA-G-TT---------------AT-A--CGCG-------T--T-------TATT---CAT---GAAA-GGTT-CG-CGCAAT---TA--AC-GC------AAA-----Atcgt
gi|20 : acataattatattttaaatg--AA--AT-T-TTCGC-G----T--T------TATTTGCGA-AA-G-TT--TTGC-G--TTTA-AT----CGCGGAA--G-T--CACGCGTATATT---TG-----CAAGAATTACG-CG
gi|9 : tttattctcctT-T-TTCGC-G----T--TATTA--C----GCGA-AA-G-TTT-C-GC-A-----A-AT-TAACGCGTAA--C-T--TTTGC---GAATAAACG----CGAA-AATTTCG-TGGA-T---TA--AC-GC------GAA-----Atatatcctcgaaagtttc
gi|26 : gcatgcaccataaacctaggacaaacctacatgggacaaacctactttatgattgtcgatatccaaaaacatgtctgtaatctacaacgtctagacggagtttgagatgtcattactgaacattgcaagtgtttatacgcgaacgT-T-TCCGC-G----TTAT------T----ACGA-AA-GTTT--C-GC-G--T--A-ATAA--CGCG-AA--ataattttttttgtctacgaaaatgagttcaatgggctttc
gi|4 : ------C----GCGA-AA-G-TTT-C-GC-G--T--TTAT-T--CGCG-AA--GTT--TACGC---aaaaaaattttacctacgaaaatgatctcaatgggctttta
gi|15 : agagttgacattatatcagattagcacgttcgttacgcgggaagattagaacacgaatattgaatctttcgtgcattcgattaagcgacatggggtacacaattgcaagtgttaaataaaatatgaaattgtcaaaacgagtcgaacattggcctagtgtctcgcaagtgtactcctcattttagcaggccgaaggcattccaacattttggttcgaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnattatgtggatataaatgatacaaaaacaacaattttgaactttcttcatagtattgcatgtataatcaattgtaataaaaaacaactaacaggaatatctgggggggttttttttaatgttttactttaatcacaatttcaatcaattgttccttcactattgacgagtcataccaattcacggatagtaacgagatactccgaatacccactaattatgatagaacacggcatgattgtcgatatccattaaaacatatctgtaatctataacgtctagacggagtttgacatgtcattactgaacattgcaaaatataaaa----GTGA-AA-T-TT--C-GC-G--T--C-AT-AA-CGCG-AA--G-CCGTAAGCGTTTATT---TG-----CGA-GCGTACGATGATATATGTA--AC-AC------GAA-----A--AATATTGTT-ATAG-CT--AGCGAAAATTAG--CTCAAATGGGCTTTCgttat
gi|26 : aaaaaaaattgcatctactag-TT--C-GC-G--T--T-AT-TA-CGCG-AA--A-C--T---------TT---CG-----TAA---TAACG-CGGAA-----A--A----------AAA-----A--AAT-TTTAC-CT-------A-CGAAAATGAT--CTCAA-TGGGCTTTat
gi|10 : -AT-A--CGCG-AAA-G-T--TACGCGTTTATT---CG----CAAA-AGTT-CG-CGTAAT----A--AC-GC------AAA-----TTTT-T-TTTTT-CT---CT--A-CGAAAATGA--GCTCAA-TGGGCTTTCta
gi|6 : gcgtgacgtataggatataacataagtccaaaaatgtgccacaaacctatgtggaacaaacattgtttatgatagaacactacaagattgtcgatatccattataacatgtctgtaatctataacgtctagacggagtttgacatgtcattactgaacattgcaatacaaatcgtgttt-T--TTCGT---TATT---AC----GCAA-ACTTTCG-CGAA-T---TA--AC-GC------g
gi|30 : tattgacgagtcataccaattcacggatagttacggtattccaaatacctacgaataaatcattgaaatgacatcatactggtcattgaaacacgatgttgactgggcggtccaacatcagagttttcaatggaccggcagtccaaggcgaacatcgggattatcggtctttatcttgtgttaaattatataggaataacatatagggatataaaaaaaaaatatgacgtcgtgtttatcttgcgtgacgcaatagatataacataagtcagcagcatgtgccacaaacctaaaatcttatgtgggacaaacctagtttatgatagaactacaaagattgtcgatatccattaaaacatgtctgtaatctacaacttctagacggagtttgacatgtcattactgaacattgcaatacaaatcgtgtttatacgcgcaaagtttacgcgttaatacgcaaaagtttac------AAA-----ATATAT-TTTTCTCT---CT--A-CGAAAATGA--GCTCAA-TGGGCTTTCatatttttttttcttaacgaaaatgagctcaatgggctttcg
gi|34 : TATT-TTTTT-CT---CT--A-CTAAAATGA--GCTCAA-TGGGCTTTCg
gi|32 : aT-TTTTT-CT---CT--A-CGAAAATGA--GCTCAA-TGGGCTTTCg
gi|33 : tatattT-TTTTT-CT---CT--A-CGAAAATGA--GCTCAA-TGGACTTTCg
6 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|13 ): TTGCGTGTAAACGCTTAATTTTCGCGATACAACACGAAAATAACGAGTCTATTCGTGTAAATTTTGCGTTAATATTCGCGGATTTCTTAAAATGTATTTAGTTTTTTCGTTATAACACGAAAAATGTTTCAATAGTTTTTTTTTTCAGCTACAAAAATTATCATGTGTTCAATGGGCTTT
Unaligned ( gi|16 ): TGATTCGTGTAAATTTTGCGTTAATATTCGCGGATTTCTTAAATGTATTTAGTTTTTTCGTTATAACACGAAAAAATGTTTCATAGTTTTTTTTTCAGCTTACAAAAATTATCATTGTGTTCAATGGGCTTTCGC
Unaligned ( gi|21 ): TCATATGCGAAAGATTTGTGTCATTATGCAAAAATATCGCTTAATTACGCTACATTTTTTTTTCATACAAAAATGAACTTAGAACATACATA
Unaligned ( gi|25 ): GCGAAAGATTCGCATTAATTGATCGTGAAAGTCTTGCGTTACAACGCGATTTTTTTCAACTACTAAAATTAGCTAAATAGGTTT
Unaligned ( gi|27 ): AACTGAGAATAGACTGAAGTTGAAATTTTGAATCTTAACTACTGACCTTTCAACTACA
Unaligned ( gi|31 ): GTCAACGATCCATTGAATTCATGTTGGACTGGGCGGTCCAACAT
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111
lowQualScore : 44444 2222 1 111111 11111 111111111 1 1111111111111111111111111111111111111111111111111 333 11111 1 111 111 11111 7777777777777777777777777777777777777777777777777777777777 22222222 1111 444444444 3333333 2222222222 333 111 1111111 11 33333 22 1 2222 222 11 2222222222222 22222222222 11 22 111 1 44444444444 11 11111 88888888888888888888888888888888 3333 222222 11111111111 111
lowQualScore : 8 8 0 99999 5 5 5 5 4444 1 666666 5 5 5 5 5 4 3 1 88888 4 666666666 0 0 2 7777777777777777777777777777777777777777777777777 000 44444 3 1 8888 333 6 4 4 8 111 66 4 4 22222 2 1 0000000000000000000000000000000000000000000000000000000000 8 1 88 555 99999999 7777 888888 3 6 3 3 3 1 3 3 4 777777777 2 55 6666666 0 5555555555 3 99 8 333 777 7777777 55 33333 6 55 6 5 3 1 99 3 33 5 0000 3 888 1 000 4 3 6666 3 3 77 4 99 4 4 3 9999 4 4 4 66 00 4444444444444 4 66 44444444444 5 5 1 00 11 4 2 66 66 8 7777 5 888 444 2 44 44 666 4 99999999999 33 4 99999 99 66666666666666666666666666666666 4 4 1 1111 4 000000 33333333333 3 0 999 44 3 44 3
lowQualScore : . . . ..... . . . . .... . ...... . . . . . . . . ..... . ......... . . . ................................................. ... ..... . . .... ... . . . . ... .. . . ..... . . .......................................................... . . .. ... ........ .... ...... . . . . . . . . . ......... . .. ....... . .......... . .. . ... ... ....... .. ..... . .. . . . . .. . .. . .... . ... . ... . . .... . . .. . .. . . . .... . . . .. .. ............. . .. ........... . . . .. .. . . .. .. . .... . ... ... . .. .. ... . ........... .. . ..... .. ................................ . . . .... . ...... ........... . . ... .. . .. .
lowQualScore : 0 0 8 66666 7 7 7 7 3333 4 444444 0 0 0 0 0 4 9 0 66666 4 222222222 1 0 0 5555555555555555555555555555555555555555555555555 888 88888 2 2 9999 999 7 4 4 9 777 11 4 4 99999 5 0 1111111111111111111111111111111111111111111111111111111111 0 4 66 888 44444444 6666 000000 8 7 3 3 3 0 2 3 0 888888888 5 44 6666666 1 1111111111 8 00 0 000 888 8888888 88 88888 7 88 7 5 5 0 22 3 77 7 7777 0 666 4 000 0 6 6666 6 6 44 0 55 0 0 9 4444 4 4 4 11 66 4444444444444 4 11 99999999999 7 7 4 66 11 4 6 11 11 0 0000 2 333 222 3 11 22 777 5 99999999999 55 4 11111 22 00000000000000000000000000000000 9 0 0 0000 0 555555 88888888888 1 7 222 22 1 22 1
consensus : NNNNNNNNNNNNNNNNNNNNNNNNTTCCAAAGTCAATAGGCCTAAATGTTT-TG-TTATACCTCCACATTA-TG-TGGATATAAAT-G-ATACAAAAACAACAA----TTTTGAACTTTCTTCA-TAGT------AATGCATGT-A-TA-AT-CAATT-GTAATA-AAAAACAANT--A--CAGG-AATATCT------G--TTTTTTTT-ATGTTT------------A-------------A--A----TTT---CG-CT-GC-AGCCATAA-TTCA---A-TCAATTGTTCCTTCACTAT---ATTGACG---AGTCATA-CCAATTCA-CGGATAGTTAC-GAG--TTAC--T-CCGAATA-C---C-ACGAAT---TA--------------------TAT--CAT-GA--------TAGT----GA----CATC-ACA--CTG---GTCCATAT---TGAAAACAC---GA---T--GTTGGACCGGGCGG-TCCAAC-A-TC-GAGTTTTCAAT-GGACCGGCA-G--CGAGG--CCGAACATCGGGATT-GTTGG----T-CTTTTTCTTGTGTTGAAT--TAGTGATATAGAGAA-AACATATA-GGG--ATN-AATAACAAGA-TA--TGACGTCGTGTTTTTA--TCTTGGCGTGAC--GTA-TAGGATATAACATAAGTCC--GNAGCATGCGCC-ACAAA--CCTAGGA-C-AAACCTA-ATGTGGGACAAACCTA-GTTT-ATGATAGAACACTACAA-GA-TTGTCGATATCCA-TTAAAACAT-GTCT--GT-AATCTA-CAACGTCT----AGACG-G-AGTTT-G--ACATGTCATT--AC-------------TGAAC-ATTGC--AA--TACAAATCGTG-TT-TATACGCG--AA--GTTT-CGCGTTNA--TT--CGCGAAAGTTT-CGCGT---TTANTCGCGGAAAGTTNC-GCGTTA-AT-NCGCG--AA--ATTTTCGCGT--TA--A----CGCGAAAGTT--CGC-G--T-NATT-CGCGAA--GT--TA--CGC---TATTCG----GCGAAGTTTCG-CGTAAT---TAAC-GC------AAA-----AT-TAAT-TTTTTCT---CT--A-CGAAAATGA--GCTC-AATGGGCTTTC
Reference ( family-5944 ) : NNNNNNNNNNNNNNNNNNNNNNNNTTCCAAAGTCAATAGGCCTAAATGTTT-TG-TTATACCTC----TTA-TG-TGGATATAAAT-G-ATACAAAAACAACAA----TTTTGAACTTTCTTCA-TAGT------AATGCATGT-A-TA-AT-CAATT-GTAATA-AAAAACAANT--A--CAGG-AATATCT------G--TTTTTTTT-ACGTTT------------A-------------A--A----TT----CG-CT-GC-AGCCACAATTTCA---A-TCAATTGTTCCTTCACTAT---ATTGACG---AGTCATA-CCAATTCA-CGGATAGTTAC-GAG--TTAC--T-CCGAATA-C---C-ACGANT---TA--------------------TAT--CAT-GA--------TAGT----GA----CATC-ACA--CTG---GTCCATAT---TGAAAACAC---GA---T--GTTGGACCGGGCGG-TCCAAC-A-TC-GNGTTTTCAAT-GGACCGGCA-G--CGGGG--CCGAACATCGGGATT-GTTG-----T-CTTTTTCTTGTGTTGAAT--TAGTGATATAGAGAN-GACATATA-GG---ATN-AATGACAA-A-TA--TGACGTCGTGTTTNTA--TCTTGGCGTGAC-CGTA-TAGGATATANCATAAGTCC--AAAGCATGCGCC-ACAAA--C-TAGGA-C-AAACCTA-ATGTGGGACAAACCTA-GTTT-ATGATAGAACACTACAA-GA-TTGTCGATATCCA-TTAAAACAT-GTCT--GT-AATCTA-CAACGTCT----AGACG-G-AGTTT-G--ACATGTCATT--AC-------------TGAAC-ATTGC--AA--TACAAATCGTG-TT-TATACGCG--AA--GTTT-CGCGTTTA--TT--CGCGAAAGTTT-CGCGT---TTAATCGCGGNAAGTTNC-GCGTTA-AT-NCGCG--AA--GTTTNCGCGT--TA--A----CGCGAAAGTT--CGC-G--T-AATT-CGCGAA--GT--TA--CGC---TATTCG----GCAAAGTTNCG-CGNAAT---TAAC-GC------AAA-----AT-TAAT-TTTTTCT---CT--A-CGAAAATGA--GCTC-AATGGGCTTTC
gi|1 : TTTCAAAGTCAATAGGTCTAAATGTTT-TG-TTATACCG------TA-TG-TGGATATAAAT-GGATACAAAAACAACAA----TTTTGAACTTTCTTCAGTTGT------AATGCATGTCA-TA-AT-CAATT-GTAATT-AAAAACCATT--A--CAGG-AAAATCT------G--TTTTGT---ATGTTT------------AGA-----------A--A----TT----CA-CT-GC-AGC-ATAA---CA---A-TCAATTGTTCCTTCAC-AT---AT-GACG---AGCCATA-TCAA---A-CGGATAGTTAA-GAG--TTAG--T-CCGAATA-C---C-ACGAAT---TA--------------------TAT--CAT-GA--------TAAT----AA----CATC-ACA--CTG---GTCCATAT---TGAAAACACA--GAATGC--GTTGG-CCGGACGG-TCCAAC-A-TC-GAGTTTTCAATGGGACCGGCA-G--CGAGG--CGGAAC-TCGGGATT--TTG-----T-CTTTTTCTTGTGTTGAAT--TAGTGAT-TAGAGAT-AACATATA-GG---ATG-AATAACAA-A-TAATTG--GTCCTGTTTT----TCTT-GCGTGAC-CGTA-TAGGA-ATAACATAAGTCC--AAGGCATGTG-C-ACAAA--C-TAGGA-C-AAACTTA-ATGTGGGACAACCGGA-GTTTAATGATAGAA-AC-ACAA-GAGTTGTCGATATCCATTTAAAACAT-GTCT--GTGAATCTA-C-ACG-CTCGCAAGACG-GAAGTTT-GTAACATGTCATC--ACGTTCGACACGAAACGAGC-ATTGC--AA--TACAAATCGTGATT-TATACGCG--AC--GTTT-CGCGTTTACCTT--CGCGAAAGTTT-CGCGT---TTAATTGCAGCAAGTTAC-GCGTTA-AT-TCGCG--AA--GTTTCCGCGT--T--------CGCGAAAGTT--CGC-G--T-AATT-CGCGAA--GT--TA--CGC---TATTCG----GCAAAGTTACG-CGAAAT---TAAC-GC------AAA-----AT-TAAT-TTTTCCT---CT--A-CGAAAATGAAGACTC-AATGGGCTTTC
gi|10 : ggcagattctagcttgttttttctGCGTGAC--GTA-TAGGATATAACATAAGTCC--AAAA-ATGTGCC-ACAAA--C-------------CTA--TGTGGAACAAACATT-GTTT-ATGATAGAACACTACAA-GA-TTGTCGATATCCA-TTATAACAT-GTCT--GT-AATCTA-TAACGTCT----AGACG-G-AGTTT-G--ACATGTCATT--AC-------------TGAAC-ATTGC--AA--TACAAATCGTG-TT-TATACGCGA-AA--GTTA-CGCGTTTA--TT--CGCAAAAG-TT-CGCG-----TAATAACGCAAATTT
gi|10 : ATA-CGCGAAA-GT--TA--CGCGTTTATTCG----CAAAAGTT-CG-CGTAAT----AAC-GC------AAA-----TT-TT-T-TTTTTCT---CT--A-CGAAAATGA--GCTC-AATGGGCTTTCtttttttctctacgaaaatgagctcaatgggctttcg
gi|11 : gcgtgacgtataggatataacataagtccaaaaatgtgccacaaacctatgtggaacaaacattgtttatgatagaacactacaagattgtcgatatccattataacatgtctgtaatctataacgtctagacggagtttgacatgtcattactgaacattgcaatacaaatcgtgtttAACCTA-GTTT-ATGATAGAACACTACAA-GA-TTGTCGATATCCA-TTAAAACAT-GTCT--GT-AATCTA-CAATGTCT----AGACG-G-AGTTT-G--ACATGTCATT--AC-------------TGAAC-ATTGCAAAA--TATAAATg
gi|12 : TTCCAAAGTCAATAGGCCTAAACTTTT-TG-T-ATACCTCCACATTA-TG-TGGATATAAAT-G-ATACAAAAACAACAA----TTTTGAACTTTCTTCA-TAGT------ATTGCATGT-A-TT-AT-CAATT-GTAATG-AAAAACAATT--A--CAGG-GTTAT-T------AATTTTTTTTT-AC-TTT------------A-------------ATCACAATTT----CACCT-GC-AGCCATAA----AC--A-TCAATTGTTCCTTCACTAT---nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntaacgcga
gi|14 : agaTTTT-GCGTGA-GA-ACGCG--GA--ATTTTCG------A--A----CGCGAAAGT---CGG-GGTT-TATT-CGCGAAA-GC--TT--CGCATTTATTCGC---GTAA-GTTTCG-CGTTATA--TAAC-GC------GAACAATGAT-TA-T-TTTTTAG---CT--A-TGAAAAGTC--GCTC-AATGtg
gi|14 : attaaaactgtttataaaacaagtaACGCG--AA--AGTC-GGGGTTTA--TT--CGCGAAAGCTT-CGCAT---TTATTCGC-GTAAGTTTC-GCGTTATATAACGCG--AA--atgattt
gi|15 : attaaaactgtttataaaacaagtattttgcgtgagaacgcggaattttcgaGTGAAATTT--CGC-G--T-CATAACGCGAA--GCCGTA--AGCGTTTATTTG-----CGAGCGTACGATGATATATGTAAC-AC------GAA-----A---AATATTGTTATAG-CT--AGCGAAAATTA--GCTCAAATGGGCTTTCcaatgattattttttagctatgaaaagtcgctcaatgatgattt
gi|17 : aaaaaaaattgcatctactagG---GTCCAC-----TGGAAACAT---GA---T--TATGGACCGGGTGG-TCCAAC-A-TC-GACTTTTTAAT-TTACCTGCA-G--T------CCGAACATGGGGATT-GTTG-----GACTTTTTat
gi|18 : aatcTG---GTC---AT---TAAAACCTT---GA---TT-GTTGGACCGCCCAG-TCCAAC-A-T--GAA--TTCAAT-GGATCGggttattccattatgtag
gi|18 : caaA---T--GTTGGACTGGGCGG-TCCAACAA-TC-AAGGTTTTAAT--GACC-ACA-G--T------CCCAACATCGGGATT-GCTGGA---C-GCTTTTCTTGTATCTAAT--TAcagtcccaacatcgggattgctggacgcttttcttgtatctaattata
gi|19 : caacgatccattgaattcA--CCG---GTCCAT-----TGAAAA--------------GTTGGACCGGGCGG-TCTAAC-ACTC-GGGGTCT-AA---------CA-T--TGAGATTTCAAACATCGGGATT-G--G-----A-CTTTTTCTTGCAT----T--CAGTGATATAGta
gi|2 : aaTGTTTCTGATTATACCTCACA-TTAATGGTGGAAATAAATTG-ATACAGAAACAACAAATAATTTTGAACTTTCTTCAATAGTCAACGTAATGCA----A-TA-AT-CAATT-GTAATATAAAAAAAAAT-----CAGGGAATATCT------G--TTTTTTTTTGTGTTT------------ACTTCTCAATCACCA--A----TTTCGACG-CT-GCGAGCCATAA---CA---AATCAATTGT--CTTCCCCATCCTATTGACGTT-A-TCACATCCAATTCA-CGGATAGTTATAGAGGTTTACACT-CTGAATA-CAGCT-ACGAGT---TAAAT-----------------TATTACAC-GAGATTTAATTAGTTCATGAAATGCATCCATA--CTG---GTCAA-AT---TGAAAACACTGGAA---T--GTTGAAC-GGGCGGGTCCAAC-A-TC-GTGTTTTCAAT-G--CCGGCATGTCCGTGG--GCGAACATGAGGATTTATTGG----TATTTTTTCTTGTGGTGAATA-TA-TGA---AGAGAA-GATATATA-GGCG-ATTTAATGACAAGA-T---TGA--TCGTGTTTTTA--TCTTGGCATGAC--GTA-TAGGA-A-ACCATAAGTCCGCATAGCATGCACC-ATAAAACC-TAGGA-CCAAACC---GTACAGGGCAAACCTA-CTTT--TG---------------GA-TTGTCGATATCAA---AAAACAT-GTCCTGGT-AATCTAGCAAC-TCT----AGACG-G-AGTTTAG--AGATGTCATGA-AC-------------TGAAC-ATTGC--A-----------GTG-TTATATACGCG--GAACGTTT-CGCGTTAA--TCCACACGAAATTTT-CGCCG---TTATTCGCAAAAAGTTAG-CCGTTAGAT-GTGCG--AA--ACTTT-GCGTAATA--ACAACCGCGAGA
gi|2 : TTGCAGTGTTATAT-ACGCG--GAACGTTT-CGCGT--TA--ATCCACACGAAATTTT-CGCCG--T-TATT-CGCAAAAAGT--TA---GC---CGTTAGATGTGCGAAACTTTG-CGTAATAA-CAACCGCGAG---AAA-----AA-TAAT-TTTTTTTGTTCT--A-CGAAAATGA--G-TT-AA-GGGCTTTaaaataattttttttgttctacgaaaatgagttaagggcttttcgt
gi|20 : tgtttctgattatacctcacattaatggtggaaataaattgatacagaaacaacaaataattttgaactttcttcaatagtcaacgtaatgcaataatcaattgtaatataaaaaaaaatcagggaatatctgtttttttttgtgtttacttctcaatcaccaatttcgacgctgcgagccataacaaatcaattgtcttccccatcctattgacgttatcacatccaattcacggatagttatagaggtttacactctgaatacagctacgagttaaattattacacgagatttaattagttcatgaaatgcatccatactggtcaaattgaaaacactggaatgttgaacgggcgggtccaacatcgtgttttcaatgccggcatgtccgtgggcgaacatgaggatttattggtattttttcttgtggtgaatatatgaagagaagatatataggcgatttaatgacaagattgatcgtgtttttatcttggcatgacgtataggaaaccataagtccgcatagcatgcaccataaaacctaggaccaaaccgtacagggcaaacctacttttggattgtcgatatcaaaaaacatgtcctggtaatctagcaactctagacggagtttagagatgtcatgaactgaaca--AA--TTTT-CGCGTTTA--TT--TGCGAAAGTTT-TGCGT---TTAATCGCGG-AAGTCAC-GCGTAT-AT-TTGCA--AG--AATTACGCGTA-TAT-C----CTCGAAAGTT--tcgt
gi|22 : tttattctcctaTTTCGCGT--TATAA----CGCGAAAGTT------------ATA-CGCG-----T--T---------TATTCA----TGAAAGGTTCG-CGCAAT---TAAC-GC------AAA-----Atc
gi|23 : acataattatattttaaatggaatgTC-AAA--C-A---GTCCAT-----TGAAAACAT---GA---T--GTTGGACCAGGCGG-TCCAAC-A-TC-AAGTTCTCAAT-GGACTGGCA-G--T------CCAAACATCTGGATT-GTTG-----
gi|24 : g----CGTC-AAA--CTG---GTCCATG-----GAAAACA---------T--GTTGGACCAGGCAG-TCCAAC-A-TT-GAGTTTTCAAT-GGACCAGCA-G--T------CCGAACATCAGGATT-GTTG-----
gi|25 : GCGAAAGATT-CGCATTAATTGATCGT-GAAAGTCTT-GCGTTA-CA-ACGCG--A
gi|26 : TT--CGC-G--T-TATTACGCGAA--AC--T-----------TTCG-----TAA--TAACG-CGGAA-----AA----------AAA-----A---AAT-TTT--AC---CT--A-CGAAAATGA--TCTC-AATGGGCTTTtttttttcaactactaaaattagctaaataggttt
gi|28 : AT---ATTGACG---AGTCATA-CCAATTCA-CGGATAGTTAC-GG----TAT--T-CCAAATA-C---C-ta
gi|29 : gctataATGC-A-TA-AT-CAATT-GTAATA-AAAAACAAAT--A--CAGG-AATATCT------G--TTTTta
gi|3 : t----TTA-TG-TGGAACTAAAT-G-ATACAAAA-CAACAAATCATTTTGAACTTTCTTCA-TAGT------CACGTATGC-AATACATACAATTTGTAATA-AAAAA-AAAT-----CAGG-AATATCT------G--TTTTTTTT-GTGTTTCTTGTTAATCACAC------------A--A----TTTCGACG-CT-GCTAGCCATA----CACAAA-TCAATTGTTTCT-CA-TCT---ATTGACGTTCA-TCAT--CCAATTCAACGGATAGTTATAGAGG-TTCC--TACTGAATA-CG--C-ACGAGT---TAATTATTACAGAGATTTAATTTAT--CAT-GA--------AATG----GG----CATCCATAA-CTG---GTCAA-AT---TGAAAACACTG-GA---TATGTTG-ACCGGGCGGGTCCAAC-A-TC-GTGTTTTCAAT-GGCACGGCT-G--CCGGA--GCGAACATGAGGATT-ATTGGTAATT-GTTTCTTGTGTGTTGAATACTA-TGA-GTAG-GAA-GAGATATAGGG---ATT-TATGACAAGA-TA--TGA---CGTGTTTTTAAGTCTTGGCATGA---GTATTAGGG-AAACCATAAGTCC--GCATGATGCACCAATAAAC-C-TAGGACC-AAACCGACA---GGGACAAACCTATCTTT-AT----------------GA-TTGTCGATATCCA-AAAAAACATGGTCTG-GT-AATCTA-CAAC-TCT----AGACGAG-AGTTT-G--AGATGTCATTGAAC-------------TGAACGATTG---A-----------GTG-TT-TA-ACGCG--GAACGTTT-CGCGTTAA--TC--CACGAAATTTT-CGCG----TTATTCGCAAAAAGTTAA-GCGTTAGAT-GTGCG--AA--CTTTA-GCGTAATA--ACAC-CGCGAGA
gi|3 : caGTGT---TTAA-CGCGGAACGTTTC-GCGTTA-AT-CCACG--AA--ATTTTCGCGT--TA---------------TT--CGC-A----AA-------AA--GT--TAAGCGT---TAGATGT---GCGAACTTTAG-CGTAAT----AAC-ACCGCGAGAAA-----AC-TAAT-TTTTTTTGTTCT--A-CGAAAATGA--GTTC-AATGGGCTTTaaactaattttttttgttctacgaaaatgagttcaatgggcttt
gi|30 : cattatgtggaactaaatgatacaaaacaacaaatcattttgaactttcttcatagtcacgtatgcaatacatacaatttgtaataaaaaaaaatcaggaatatctgttttttttgtgtttcttgttaatcacacaatttcgacgctgctagccatacacaaatcaattgtttctcatctattgacgttcatcatccaattcaacggatagttatagaggttcctactgaatacgcacgagttaattattacagagatttaatttatcatgaaatgggcatccataactggtcaaattgaaaacactggatatgttgaccgggcgggtccaacatcgtgttttcaatggcacggctgccggagcgaacatgaggattattggtaattgtttcttgtgtgttgaatactatgagtaggaagagatatagggatttatgacaagatatgacgtgtttttaagtcttggcatgagtattagggaaaccataagtccgcatgatgcaccaataaacctaggaccaaaccgacagggacaaacctatctttatgattgtcgatatccaaaaaaacatggtctggtaatctacaactctagacgagagtttgagatgtcattgaactgaacgattga------AAA-----ATATATT-TTTCTCT---CT--A-CGAAAATGA--GCTC-AATGGGCTTTC
gi|31 : A---T--GTTGGACCGCCCAG-TCCAAC-A-T--GAA--TTCAAT-GGATCGg
gi|32 : gtcaaT-TTTTTCT---CT--A-CGAAAATGA--GCTC-AATGGGCTTTC
gi|33 : tatattT-TTTTTCT---CT--A-CGAAAATGA--GCTC-AATGGACTTTCg
gi|34 : attt-TATT-TTTTTCT---CT--A-CTAAAATGA--GCTC-AATGGGCTTTCg
gi|4 : a----TTA-TG-TGGATATAAAT-G-ATACAAAAACAACAA----TTTTGAACTTTCTTCA-TAGT------ATTGCATGT-A-TA-AT-CAATT-GTAATA-AAAAACAACTA-A--CAGG-AATATCTGGGGGGG--TTTTTTTTAATGTTT------------T-------------A----------------CT-TT-AATCACAATTTCA---A-TCAATTGTTCCTTCAC--T---ATTGACG---AGTCATA-CCAATTCA-CGGATAGTAAC-GAG--ATAC--T-CCGAATACC---C-ACTAAT---T---------------------------AT-GA--------TAG-----AA----CACG-GCA---TGATTGTCGATATCCATTAAAACAg
gi|4 : agagttgacattatatcagattagcacgttcgttacgcgggaagattagaacacgaatattgaatctttcgtgcattcgattaagcgacatggggtacacaattgcaagtgttaaataaaatatgaaattgtcaaaacgagtcgaacattggcctagtgtctcgcaagtgtactcctcattttagcaggccgaaggcattccaacattttggttcgaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaTT-ATGATAGAACACGGCAT-GA-TTGTCGATATCCA-TTAAAACAT-ATCT--GT-AATCTA-TAACGTCT----AGACG-G-AGTTT-G--ACATGTCATT--AC-------------TGAAC-ATTGC--AAAATATAAA------------ACGCG--AAA-GTTT-CGCGTTTA--TT--CGCG-AAGTTTACGCGT---Ttatctgtaatctataacgtctagacggagtttgacatgtcattactgaacattgcaaaatataaaacgcgaaagtttcgcgtttattcgcgaagtttacgcgttat
gi|5 : agagttgacattatatcagattagcacgttcgttacgcgggaagattagaacacgaatattgaatctttcgtgcattcgattaagcgacatggggtacacaattgcaagtgttaaataaaatatgaaattgtcaaaacgagtcgaacattggcctagtgtctcgcaagtgtactcctcattttagcaggccgaaggcattccaacattttggttcgaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnattatgtggatataaatgatacaaaaacaacaattttgaactttcttcatagtattgcatgtataatcaattgtaataaaaaacaactaacaggaatatctgggggggttttttttaatgttttactttaatcacaatttcaatcaattgttccttcactattgacgagtcataccaattcacggatagtaacgagatactccgaatacccactaaAGTCAATAGGCCTAAATGTTT-TG-TTATACCTCCACATTA-TG-TGGATATAAAT-G-ATACAGAAACAACAA----TTTTGAACTT-CTTCA-TGGT------AATGCATGT-A-TA-AT-CAATT-GTAATA-AAAAAAAACT--ATACAGG-AATTTCT------G--TTTTT----ATGTTT------------T-------------A----------------CT-TT-AATCACAATTTCA---A-TCA-TTGTTCCT-CACTAT-----TGATG---AGTCATA-CCAATTCA-CGGATAGCTAC-AAG--TTAC--T-ACAAATA-C---C-A--ACC---TA--------------------GTT--TAT-GA--------TAG-----AA----CACT-ACAAGATT---GTCGATATCCATTAAAACAT---Gat
gi|5 : agaattgacattatatcagattagcacgttagttacacgggtagattagagaatgaatattgaatctttcatgcattcgattaagcgacacgaggtacacgattgcaagtgttgtaaatacatgtaaaaatgtgaaattgtcgaaacgagtcgaacattggcgtagtgtctcgcaagtgtactcctcattttagcaggtcgaaggcattccaacatttggttcgagggtctatcatagcccatgttgccgagacttcACCAACCTA-GTTT-ATGATAGAACACTACAA-GA-TTGTCGATATCCA-TTAAAACAT-GTCT--GT-AATCTA-CAATGTCT----AGACG-G-AGTTT-G--ACATGTCATT--AC-------------TGAAC-ATTGC--AA--tctgtaatctacaatgtctagacggagtttgacatgtcattactgaacattgcaaaat
gi|6 : agaattgacattatatcagattagcacgttagttacacgggtagattagagaatgaatattgaatctttcatgcattcgattaagcgacacgaggtacacgattgcaagtgttgtaaatacatgtaaaaatgtgaaattgtcgaaacgagtcgaacattggcgtagtgtctcgcaagtgtactcctcattttagcaggtcgaaggcattccaacatttggttcgagggtctatcatagcccatgttgccgagacttcagtcaataggcctaaatgttttgttatacctccacattatgtggatataaatgatacagaaacaacaattttgaacttcttcatggtaatgcatgtataatcaattgtaataaaaaaaaactatacaggaatttctgtttttatgttttactttaatcacaatttcaatcattgttcctcactattgatgagtcataccaattcacggatagctacaagttactacaaatT---ATTGACG---AGTCATA-CCAATTCA-CGGATAGTTAC-GG----TAT--T-CCAAATA-C---CTACGAAT---AA---------------------AT--CATTGA---------AAT----GA----CATC-ATA--CTG---GTC---AT---TGAAA-CAC---GA---T--GTTG-ACTGGGCGG-TCCAAC-A-TCAGAGTTTTCAAT-GGACCGGCA-GTCCAAGG--C-GAACATCGGGATT-ATCGG----T-CTTTATCTTGTGTTAAAT--TA----TATAGGAAT-AACATATA-GGGATATA-AAAAAAAA-A-TA--TGACGTCGTGTTT--A--TCTTG-CGTGACGCA-A-TAG-ATATAACATAAGTCA--GCAGCATGTGCC-ACAAA--CCTA------AAATCTT-ATGTGGGACAAACCTA-GTTT-ATGATAGAAC--TACAAAGA-TTGTCGATATCCA-TTAAAACAT-GTCT--GT-AATCTA-CAACTTCT----AGACG-G-AGTTT-G--ACATGTCATT--AC-------------TGAAC-ATTGC--AA--TACAAATCGTG-TT-TATACGCGCAAA--GTTTACGCGTTAA--TA--CGCAAAAGTTTACGCGT---TAATTCGC-GAAAGTTT--GCG-TA-AT-A-ACG--AA--aat
gi|6 : C-GTGTTT-AT-ACGCGCAAA--GTTTACGCGT--TA--ATA--CGCAAAAGTTTACGC-G--TTAATT-CGCGAA------------------------------AGTTT-G-CGTAAT----AAC-G-------AAA-----AT--ATT-TTTTTTT---CTTAA-CGAAAATGA--GCTC-AATGGGCTTTCaatatttttttttcttaacgaaaatgagctcaatgggctttcg
gi|7 : tattgacgagtcataccaattcacggatagttacggtattccaaatacctacgaataaatcattgaaatgacatcatactggtcattgaaacacgatgttgactgggcggtccaacatcagagttttcaatggaccggcagtccaaggcgaacatcgggattatcggtctttatcttgtgttaaattatataggaataacatatagggatataaaaaaaaaatatgacgtcgtgtttatcttgcgtgacgcaatagatataacataagtcagcagcatgtgccacaaacctaaaatcttatgtgggacaaacctagtttatgatagaactacaaagattgtcgatatccattaaaacatgtctgtaatctacaacttctagacggagtttgacatgtcattactgaacattgcaatacaaatAGTCAATAGGCTTAAATGTTT-TG-TTATACCTTCACATTA-TG-TGGATATAAAT-G-ATACAAAAACAACAA----TTTTGAACTTTCTCCA-TGGT------AATGCATGT-A-TA-AT-CAATT-GTAATA-AAAA--AACTACA--CAGG-AATATCT------G----TAATTT-ATGTTT------------T-------------A--C----TT----TG-AT-------CACAATTTCA---A-TCAATTGTTCCTTCGC--T---ATTGATG---AGTCATA-CCAATTCA-GGAATAGTTAC-AAG--TTAC--T-CCGAATA-C---C-A--ACC---TA--------------------GTT--TAT-GA--------TAG-----AA----CACT-ACA--g
gi|7 : atgaatattgaatctttcgtgcattcgatttaaaagcgacacagggtacacgattgctagtgttgtaaataaaatgtgaaattatcgagacgagtcgaacattggcctagtgtctcgcaagtgtactcctcattttagcaggtcgaaggcattccaacattttggttcgaggttctatcatagcgcatgttgcccgagacttcACCAACCTA-GTTT-ATGATAGAACACTACAA-GG-TTGTCGaggttgtcg
gi|8 : atgaatattgaatctttcgtgcattcgatttaaaagcgacacagggtacacgattgctagtgttgtaaataaaatgtgaaattatcgagacgagtcgaacattggcctagtgtctcgcaagtgtactcctcattttagcaggtcgaaggcattccaacattttggttcgaggttctatcatagcgcatgttgcccgagacttcagtcaataggcttaaatgttttgttataccttcacattatgtggatataaatgatacaaaaacaacaattttgaactttctccatggtaatgcatgtataatcaattgtaataaaaaaactacacaggaatatctgtaatttatgttttactttgatcacaatttcaatcaattgttccttcgctattgatgagtcataccaattcaggaatagttacaagttactccgaat-AAAAACAATT--A--CAGG-ATTATCT----------TTTTTTT-ACTTTT------------ATCAC---------A--A----TTT---CA-CCAGC-AGCCATAAA--CA---ACTCGATTGTTCCTTCACTAT-----TGATG---A-------CCAATTCC-AGGATAGTTAC-GAG--TTAT--T-CCGAATA-C---CCACGAATAGACA--------------------T-T--CAT-GA---------AAT----GA----CATC-ATA--CTG---GTCCAT-----TGAAAACAC---GA---T--GTTG-ACTGGGCGT-TCCAAC-A-TC-GAGTTTTCAAT-GGACCGGCA-GTCCAAGG--C-GAACATCGGGATT-ATTGG----T-CTTTATCTTGTGTTGAA-----GT-ATATAGAGAATAACATACA-GGG--AT---ATAACAA-AATA--TGACGTCGTGTTT--A--TCTTG-CGTGAC--GTA-TAGGATATAGCATAAGTCC--AAA-CATGTGCT-ACAGA--CCTAAGA-C-AAATCTA--TGTGGGACAAACCTA-GTTT-ATGATAGAACACTACAA-G----------------TTAAAATAT-GTCT--GT-GATCTA-
gi|9 : GCATGCACC-ATAAA--CCTAGGA-C-AAACCTA--CATGGGACAAACCTA-CTTT-ATGAT-----------------TGTCGATATCCA---AAAACAT-GTCT--GT-AATCTA-CAACGTCT----AGACG-G-AGTTT-G--AGATGTCATT--AC-------------TGAAC-ATTGC--AA----------GTG-TT-TATACGCG--AAC-GTTT-CGCGTTAA--TC--CACGAAATTTT-CGCGT---TTATTCGC-AAAAGTTAC-GCGTTA-AT-TTGCG--AA--ACTTTCGCGTAATA--A----CGCGAAA
gi|9 : GTGT---TTATACGCG-AACGTTTC-GCGTTA-AT-CCACG--AA--ATTTTCGCGT--TT--ATT--CGCAAAAGTTA-CGC-G--TTAATT-TGCGAA-------A--C---------------------TTTCG-CGTAAT----AAC-GCG-----AAA-----AA-TAAT-TTTTTTTGT-CT--A-CGAAAATGA--GTTC-AATGGGCTTTCaataattttttttgtctacgaaaatgagttcaatgggctttc
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|13 ): TTGCGTGTAAACGCTTAATTTTCGCGATACAACACGAAAATAACGAGTCTATTCGTGTAAATTTTGCGTTAATATTCGCGGATTTCTTAAAATGTATTTAGTTTTTTCGTTATAACACGAAAAATGTTTCAATAGTTTTTTTTTTCAGCTACAAAAATTATCATGTGTTCAATGGGCTTT
Unaligned ( gi|16 ): TGATTCGTGTAAATTTTGCGTTAATATTCGCGGATTTCTTAAATGTATTTAGTTTTTTCGTTATAACACGAAAAAATGTTTCATAGTTTTTTTTTCAGCTTACAAAAATTATCATTGTGTTCAATGGGCTTTCGC
Unaligned ( gi|21 ): TCATATGCGAAAGATTTGTGTCATTATGCAAAAATATCGCTTAATTACGCTACATTTTTTTTTCATACAAAAATGAACTTAGAACATACATA
Unaligned ( gi|27 ): AACTGAGAATAGACTGAAGTTGAAATTTTGAATCTTAACTACTGACCTTTCAACTACA
Alignments
lowQualScore : 111111111111111111111111111111111111111111
lowQualScore : 2222 1 111111 111 2222222222 1 000000000000000000000000000000000000000000 333 1 11 111 111 11111 7777777777777777777777777777777777777777777777777777777777 22222222 1111 44444444444 111 2222222222 222 111 11 22222 1 1 1111 111111 22222 11 2222222222222 22222222222 222222 3333333333333 22222222222222 6666666666666666666666666 111111 44444444444444444444 222222 11111111111111 22222 111111
lowQualScore : 8 8 0 88 5 5 5 5 4444 1 666666 5 5 5 5 5 4 3 777 222 4 0000000000 0 222222222222222222222222222222222222222222 888 5 0 99 777 333 6 4 4 8 111 66 4 4 22222 2 0 0000000000000000000000000000000000000000000000000000000000 8 1 88 555 99999999 7777 888888 3 6 3 3 3 3 3 4 88888888888 2 77 222 5 77 0 5555555555 3 99 8 555 6 111 55 77777 6 6 3 5 6 1 1111 5 5 000000 22222 4 3 6666 3 3 77 4 99 4 4 3 9999 4 4 4 66 00 4444444444444 4 66 33333333333 5 5 3 444444 4 1 66 777 8 5555 3 1 88 66 2 99 2 33 2 99999999 2 7777777777777 77 33333333333333 4 4 8888888888888888888888888 4 6 000000 66666666666666666666 4 666666 88888888888888 6 3 22222 3 333333 3
lowQualScore : . . . .. . . . . .... . ...... . . . . . . . ... ... . .......... . .......................................... ... . . .. ... ... . . . . ... .. . . ..... . . .......................................................... . . .. ... ........ .... ...... . . . . . . . . ........... . .. ... . .. . .......... . .. . ... . ... .. ..... . . . . . . .... . . ...... ..... . . .... . . .. . .. . . . .... . . . .. .. ............. . .. ........... . . . ...... . . .. ... . .... . . .. .. . .. . .. . ........ . ............. .. .............. . . ......................... . . ...... .................... . ...... .............. . . ..... . ...... .
lowQualScore : 0 0 8 22 7 7 7 7 3333 4 444444 0 0 0 0 0 4 9 111 444 4 8888888888 0 999999999999999999999999999999999999999999 999 0 0 00 000 999 7 4 4 9 777 11 4 4 99999 5 8 1111111111111111111111111111111111111111111111111111111111 0 4 66 888 44444444 6666 000000 8 7 3 3 3 2 3 0 55555555555 5 99 666 0 99 1 1111111111 8 44 0 888 4 888 88 88888 7 7 3 5 7 0 6666 7 7 111111 99999 0 6 6666 6 6 44 0 55 0 0 9 4444 4 4 4 11 66 4444444444444 4 11 44444444444 0 0 4 111111 4 0 11 999 0 8888 1 0 88 11 9 66 0 77 3 77777777 7 6666666666666 99 99999999999999 4 4 2222222222222222222222222 0 4 777777 44444444444444444444 0 888888 22222222222222 0 1 77777 1 111111 1
consensus : NNNNNNNNNNNNNNNNNNNNNNNNTTCCAAAGTCAATAGGCCTAAATGTTT-TG-TTATACCTCCACATTA-TG-TGGATATAAAT-G-ATACAAAAACAACAA----TTTTGAACTTTCTTCA-TAGT------AATGCATGT-A-TA-AT-CAATT-GTAATA-AAAAACAA--NT--ACAGG-AATATCT------G--TTTTTTTT-ATGTTT------------A-------------AATTTCG---CT-GC-AGCCATAAT-TCA-A-TCAATTGTTCCTTCACTAT---ATTGACG---AGTCATA-CCAATTCA-CGGATAGTTAC-GAG--TTAC--T-CCGAATA-C---C-ACGAAT---TA--------------------TAT--CAT-GA--------TAGT----GA----CATC-ACA--CTG---GTCCATAT---TGAAAACAC---GA---T--GTTGGACCGGGCGG-TCCAAC-A-TC-GAGTTTTCAAT-GGACCGGCA-G--C--GAGG--CCGAACATCGGGATT-GTTGGT--C-TTTTTCT--TGTGTTGAAT--TAGTGATATAGAGAA-AACATATAGG-GATNTAATAACAAGATA--TGACGTCGTGTTTTTA--TCTTGGCGTGA-CGTA-TAGGATATAAC-ATAAGTCCGNA--GCATGCGCC-ACAAA-CCTAGGA-C-AAACCTA-ATGTGGGACAAACCTA-GTTT-ATGATAGAACACTACAA-GA-TTGTCGATATCCA-TTAAAACAT-GTCT--GT-AATCTA-CAACGTCT----AGACG-G-AGTTT-G--ACATGTCATT--AC-------------TGAAC-ATTGC--AA--TACAAATCGTG-TT-TATACGCG--AA--GTTT-CGCGTTNA--TC--CGCGAAAGTTT-CGCGT---T-TATTCGCGGAAAGTTNCGCGT-TA--ATNCGC--GAAA--------T-TTTCGCGT--T--A--A----CGCGAAA--GT-T-C-GCG--T-T-A-TTCGCG-AA--GTTACGC-----TATTCG----GCG-AAGTTTC-----GCGTAAT--TA----------------AC-GC------AAA-----AT-------TAATTTTT-TCT-----CTA-CGAAAATGA------GCTC-AATGGGCTTTC
Reference ( family-5944 ) : NNNNNNNNNNNNNNNNNNNNNNNNTTCCAAAGTCAATAGGCCTAAATGTTT-TG-TTATACCTCCACATTA-TG-TGGATATAAAT-G-ATACAAAAACAACAA----TTTTGAACTTTCTTCA-TAGT------AATGCATGT-A-TA-AT-CAATT-GTAATA-AAAAACAA--NT--ACAGG-AATATCT------G--TTTTTTTT-ATGTTT------------A-------------AATTTCG---CT-GC-AGCCATAA-TTCA-A-TCAATTGTTCCTTCACTAT---ATTGACG---AGTCATA-CCAATTCA-CGGATAGTTAC-GAG--TTAC--T-CCGAATA-C---C-ACGAAT---TA--------------------TAT--CAT-GA--------TAGT----GA----CATC-ACA--CTG---GTCCATAT---TGAAAACAC---GA---T--GTTGGACCGGGCGG-TCCAAC-A-TC-GAGTTTTCAAT-GGACCGGCA-G--C--GAGG--CCGAACATCGGGATT-GTTGGT--C-TTTTTCT--TGTGTTGAAT--TAGTGATATAGAGAA-AACATATAGG-GATN-AATAACAAGATA--TGACGTCGTGTTTTTA--TCTTGGCGTGA-CGTA-TAGGATATAAC-ATAAGTCCGNA--GCATGCGCC-ACAAA-CCTAGGA-C-AAACCTA-ATGTGGGACAAACCTA-GTTT-ATGATAGAACACTACAA-GA-TTGTCGATATCCA-TTAAAACAT-GTCT--GT-AATCTA-CAACGTCT----AGACG-G-AGTTT-G--ACATGTCATT--AC-------------TGAAC-ATTGC--AA--TACAAATCGTG-TT-TATACGCG--AA--GTTT-CGCGTTNA--TT--CGCGAAAGTTT-CGCGT---T-TANTCGCGGAAAGTTNCGCGT-TA--ATNCGC--GAAA--------T-TTTCGCGT--T--A--A----CGCGAAA--GT-T-C-GCG--T-N-A-TTCGCG-AA--GTTACGC-----TATTCG----GCG-AAGTTTC-----GCGTAAT--TA----------------AC-GC------AAA-----AT-------TAATTTTT-TCT-----CTA-CGAAAATGA------GCTC-AATGGGCTTTC
gi|1 : TTTCAAAGTCAATAGGTCTAAATGTTT-TG-TTATACCG------TA-TG-TGGATATAAAT-GGATACAAAAACAACAA----TTTTGAACTTTCTTCAGTTGT------AATGCATGTCA-TA-AT-CAATT-GTAATT-AAAAACCA--TT--ACAGG-AAAATCT------G--TTTTGT---ATGTTT------------AG------------AAATTCA---CT-GC-AGC-ATAA---CA-A-TCAATTGTTCCTTCAC-AT---AT-GACG---AGCCATA-TCAA---A-CGGATAGTTAA-GAG--TTAG--T-CCGAATA-C---C-ACGAAT---TA--------------------TAT--CAT-GA--------TAAT----AA----CATC-ACA--CTG---GTCCATAT---TGAAAACACA--GAATGC--GTTGG-CCGGACGG-TCCAAC-A-TC-GAGTTTTCAATGGGACCGGCA-G--C--GAGG--CGGAAC-TCGGGATT--TT-GT--C-TTTTTCT--TGTGTTGAAT--TAGTGAT-TAGAGAT-AACATATA-G-GATG-AATAACAA-ATAATTG--GTCCTGTTTT----TCTT-GCGTGACCGTA-TAGGA-ATAAC-ATAAGTCCAAG--GCATGTG-C-ACAAA--CTAGGA-C-AAACTTA-ATGTGGGACAACCGGA-GTTTAATGATAGAA-AC-ACAA-GAGTTGTCGATATCCATTTAAAACAT-GTCT--GTGAATCTA-C-ACG-CTCGCAAGACG-GAAGTTT-GTAACATGTCATC--ACGTTCGACACGAAACGAGC-ATTGC--AA--TACAAATCGTGATT-TATACGCG--AC--GTTT-CGCGTTTACCTT--CGCGAAAGTTT-CGCGT---T-TAATTGCAGCAAGTTACGCGT-TA--ATTCGC--GAAG--------T-TTCCGCGT--T----------CGCGAAA--GT-T-C-GCG--T-A-A-TTCGCG-AA--GTTACGC-----TATTCG----GCA-AAGTTAC-----GCGAAAT--TA----------------AC-GC------AAA-----AT-------TAATTTTT-CCT-----CTA-CGAAAATGAAG----ACTC-AATGGGCTTTC
gi|10 : ggcagattctagcttgttttttctGCGTGA-CGTA-TAGGATATAAC-ATAAGTCCAAA--A-ATGTGCC-ACAAA-CCTA---------------TGTGGAACAAACATT-GTTT-ATGATAGAACACTACAA-GA-TTGTCGATATCCA-TTATAACAT-GTCT--GT-AATCTA-TAACGTCT----AGACG-G-AGTTT-G--ACATGTCATT--AC-------------TGAAC-ATTGC--AA--TACAAATCGTG-TT-TATACGCGA-AA--GTTA-CGCGTTTA--TT--CGCAAAAG-TT-CGCG------TAATAACGCAAATTT
gi|10 : -T-C-GTG--T-TTA-TACGCG-AAA-GTTACGCGTT--TATTCG-----CA-AAAGTTC-----GCGTAAT---A----------------AC-GC------AAA-----TT-------TT-TTTTT-TCT-----CTA-CGAAAATGA------GCTC-AATGGGCTTTCtttttttctctacgaaaatgagctcaatgggctttcg
gi|11 : gcgtgacgtataggatataacataagtccaaaaatgtgccacaaacctatgtggaacaaacattgtttatgatagaacactacaagattgtcgatatccattataacatgtctgtaatctataacgtctagacggagtttgacatgtcattactgaacattgcaatacaaaAACCTA-GTTT-ATGATAGAACACTACAA-GA-TTGTCGATATCCA-TTAAAACAT-GTCT--GT-AATCTA-CAATGTCT----AGACG-G-AGTTT-G--ACATGTCATT--AC-------------TGAAC-ATTGCAAAA--TATAAATg
gi|12 : TTCCAAAGTCAATAGGCCTAAACTTTT-TG-T-ATACCTCCACATTA-TG-TGGATATAAAT-G-ATACAAAAACAACAA----TTTTGAACTTTCTTCA-TAGT------ATTGCATGT-A-TT-AT-CAATT-GTAATG-AAAAACAA--TT--ACAGG-GTTAT-T------AATTTTTTTTT-AC-TTT------------AATCAC--------AATTTCAC--CT-GC-AGCCATAA----ACA-TCAATTGTTCCTTCACTAT---nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntaacgcga
gi|13 : agaTTGCG-TG-TAAACGCTT-AA--TTTT-CGCGATAC--AA--CACGAAAATAA-CGAGT---C-TATTCGTGTAAA-TTTTGCGT-TAATATTCGC--GGA-----------TTTC---T--T--A--A----tg
gi|13 : TTGCGTGT-AA--A--CGC--TTAA--------T-TTTCGCGA--TACA--A----CACGAAA--ATAA-C-GAG--TCT-A-TTCGTGTAA--ATTTTGCGTTAATATTC-----GCG-GA-TTTCTTAAAATGTATT--TAGTTTTTTCGTTATAACAC-GA------AAA-----ATGTTTCAATAGTTTTT-TTTTTCAGCTA-CAAAAATTATCATGTGTTC-AATGGGCTTTaatgtatttagttttttcgttataacacgaaaaatgtttcaatagttttttttttcagctacaaaaattatcatgtgttcaatgggcttt
gi|14 : TTTTGCGT-GA--GAACGC--GGAA--------T-TTTCG--------A--A----CGCGAAA--GT---C-GGGGTT-T-A-TTCGCG-AAA-GCTTCGCATT--TATTCG-----CGTAAGTTTC-----GCGTTATA-TA----------------AC-GC------GAACAATGAT-------TA-TTTTT-TAG-----CTA-TGAAAAGTC------GCTC-AATG
gi|15 : attaaaactgtttataaaacaagtaAAAATT--GCATCTA--CTAGGT--GAAA--------T-TT-CGCGTCAT--A--A----CGCGAAGCCGT-A-A-GCG--T-TTA-TTTGCG-AG--CGTACG-------AT---------G-ATATAT--------GTAAC--------------------AC-GA------AAA-----AT---------ATTGTTATAG-----CTAGCGAAAATTA------GCTCAAATGGGCTTTCatgattt
gi|17 : aaaaG---GTCCAC-----TGGAAACAT---GA---T--TATGGACCGGGTGG-TCCAAC-A-TC-GACTTTTTAAT-TTACCTGCA-G--T--------CCGAACATGGGGATT-GTTGGA--C-TTTTTat
gi|18 : aatcTG---GTC---AT---TAAAACCTT---GA---TT-GTTGGACCGCCCAG-TCCAAC-A-T--GAA--TTCAAT-GGATCGggttattccattatgtag
gi|18 : caaA---T--GTTGGACTGGGCGG-TCCAACAA-TC-AAGGTTTTAAT--GACC-ACA-G--T--------CCCAACATCGGGATT-GCTGGA--CGCTTTTCT--TGTATCTAAT--TAcagtcccaacatcgggattgctggacgcttttcttgtatctaattata
gi|19 : caacgatccattgaattcA--CCG---GTCCAT-----TGAAAA--------------GTTGGACCGGGCGG-TCTAAC-ACTC-GGGGTCT-AA---------CA-T--T--GAGATTTCAAACATCGGGA----TTGGA--C-TTTTTCT--TGCAT----T--CAGTGATATAGta
gi|2 : aaTGTTTCTGATTATACCTC-ACATTAATGGTGGAAATAAATTG-ATACAGAAACAACAAATAATTTTGAACTTTCTTCAATAGTCAACGTAATGCA----A-TA-AT-CAATT-GTAATATAAAAAAAA--AT---CAGGGAATATCT------G--TTTTTTTTTGTGTTT------------ACTTCTCAATCACCAATTTCGACGCT-GCGAGCCATAA---CA-AATCAATTGT--CTTCCCCATCCTATTGACGTT-A-TCACATCCAATTCA-CGGATAGTTATAGAGGTTTACACT-CTGAATA-CAGCT-ACGAGT---TAAAT-----------------TATTACAC-GAGATTTAATTAGTTCATGAAATGCATCCATA--CTG---GTCAA-AT---TGAAAACACTGGAA---T--GTTGAAC-GGGCGGGTCCAAC-A-TC-GTGTTTTCAAT-G--CCGGCATGTCC--GTGG--GCGAACATGAGGATTTATTGGTA-T-TTTTTCT--TGTGGTGAATA-TA-TGA---AGAGAA-GATATATAGGCGATTTAATGACAAGAT---TGA--TCGTGTTTTTA--TCTTGGCATGA-CGTA-TAGGA---AACCATAAGTCCGCATAGCATGCACC-ATAAAACCTAGGA-CCAAACC---GTACAGGGCAAACCTA-CTTT--TG---------------GA-TTGTCGATATCAA---AAAACAT-GTCCTGGT-AATCTAGCAAC-TCT----AGACG-G-AGTTTAG--AGATGTCATGA-AC-------------TGAAC-ATTGC--A-----------GTG-TTATATACGCG--GAACGTTT-CGCGTTAA--TCCACACGAAATTTT-CGCCG---T-TATTCGCAAAAAGTTAGCCGT-TAG-ATGTGC--GAAA--------C-TTT-GCGTAAT--A--ACAACCGCGAGA--
gi|2 : GTGT---TATATACGCGGAACGTTTCGCGT-TA--ATCCACACGAAA--------T-TTTCGC--------------------------------CG--T-T-A-TTCGCA-AAAAGTTA-GC-----CGTTAGATGTGCG-AAACTTT-----GCGTAATAACA----------------ACCGCGAG---AAA-----AA-------TAATTTTT-TTTGTT--CTA-CGAAAATGA------G-TT-AA-GGGCTTTaaaataattttttttgttctacgaaaatgagttaagggcttttcgt
gi|20 : tgtttctgattatacctcacattaatggtggaaataaattgatacagaaacaacaaataattttgaactttcttcaatagtcaacgtaatgcaataatcaattgtaatataaaaaaaaatcagggaatatctgtttttttttgtgtttacttctcaatcaccaatttcgacgctgcgagccataacaaatcaattgtcttccccatcctattgacgttatcacatccaattcacggatagttatagaggtttacactctgaatacagctacgagttaaattattacacgagatttaattagttcatgaaatgcatccatactggtcaaattgaaaacactggaatgttgaacgggcgggtccaacatcgtgttttcaatgccggcatgtccgtgggcgaacatgaggatttattggtattttttcttgtggtgaatatatgaagagaagatatataggcgatttaatgacaagattgatcgtgtttttatcttggcatgacgtataggaaaccataagtccgcatagcatgcaccataaaacctaggaccaaaccgtacagggcaaacctacttttggattgtcgatatcaaaaaacatgtcctggtaatctagcaactctagacggagtttagagatgtcatgaactgaacattgca--AA--TTTT-CGCGTTTA--TT--TGCGAAAGTTT-TGCGT---T-TAATCGCGG-AAGTCACGCGT-AT--ATTTGC--AAGA--------A-TTACGCGTA-T--AT-C----CTCGAAA--GT-T-tcgt
gi|22 : tttattctccta--GGAA--------TGTTTCGCGT--T--ATAA----CGCGAAA--GT-T------------A-TACGCG------TT---------TATTCA----TGA-AAGGTTC-----GCGCAAT--TA----------------AC-GC------AAA-----Atc
gi|23 : acataattatattttaaatTC-AAA--C-A---GTCCAT-----TGAAAACAT---GA---T--GTTGGACCAGGCGG-TCCAAC-A-TC-AAGTTCTCAAT-GGACTGGCA-G--T--------CCAAACATCTGGATT-GTTG
gi|24 : g----CGTC-AAA--CTG---GTCCATG-----GAAAACA---------T--GTTGGACCAGGCAG-TCCAAC-A-TT-GAGTTTTCAAT-GGACCAGCA-G--T--------CCGAACATCAGGATT-GTTG
gi|25 : GCGAAAGATT-CGCATTAAT-TGATCGT-GAAAGTCTTGCGT-TA--CAACGC--G--A--------T-TTT
gi|26 : CGT-----TATTAC----GCG-AAACTTT------CGTAAT---A----------------AC-GCGGA---AAA-----AA-------AAAATTTT-AC------CTA-CGAAAATGA------TCTC-AATGGGCTTTtttcaactactaaaattagctaaataggttt
gi|28 : ttcgAT---ATTGACG---AGTCATA-CCAATTCA-CGGATAGTTAC-GG----TAT--T-CCAAATA-C---C-ta
gi|29 : gctataATGC-A-TA-AT-CAATT-GTAATA-AAAAACAA--AT--ACAGG-AATATCT------G--TTTTta
gi|3 : tCATTA-TG-TGGAACTAAAT-G-ATACAAAA-CAACAAATCATTTTGAACTTTCTTCA-TAGT------CACGTATGC-AATACATACAATTTGTAATA-AAAAA-AA--AT---CAGG-AATATCT------G--TTTTTTTT-GTGTTTCTTGTTAATCACAC------------AATTTCGACGCT-GCTAGCCATAC-ACAA-A-TCAATTGTTTCT-CA-TCT---ATTGACGTTCA-TCAT--CCAATTCAACGGATAGTTATAGAGG-TTCC--TACTGAATA-CG--C-ACGAGT---TAATTATTACAGAGATTTAATTTAT--CAT-GA--------AATG----GG----CATCCATAA-CTG---GTCAA-AT---TGAAAACACTG-GA---TATGTTG-ACCGGGCGGGTCCAAC-A-TC-GTGTTTTCAAT-GGCACGGCT-G--CCGGAG----CGAACATGAGGATT-ATTGGTAAT-TGTTTCTTGTGTGTTGAATACTA-TGA-GTAG-GAA-GAGATATAGG-GATT-TATGACAAGATA--TGA---CGTGTTTTTAAGTCTTGGCATGA--GTATTAGGG-AAACC-ATAAGTCCGCA--TGATGCACCAATAAA-CCTAGGACC-AAACCGACA---GGGACAAACCTATCTTT-AT----------------GA-TTGTCGATATCCA-AAAAAACATGGTCTG-GT-AATCTA-CAAC-TCT----AGACGAG-AGTTT-G--AGATGTCATTGAAC-------------TGAACGATTG---A-----------GTG-TT-TA-ACGCG--GAACGTTT-CGCGTTAA--TC--CACGAAATTTT-CGCG----T-TATTCGCAAAAAGTTAAGCGT-TAG-ATGTGC--G-AA--------C-TTTAGCGTAAT--A--ACAC-CGCGAGA--
gi|3 : GTGT---T-TAA-CGCGGAACGTTTCGCGT-TA--ATCCAC--GAAA--------T-TTTCGCGT--T--A--TT---CGCAAAAA-GT-T-AAGCG--T-T-A------G-AT--GT--------------------GCG-AACTTTA-----GCGTAAT---A----------------AC-ACCGCGAGAAA-----AC-------TAATTTTT-TTTGTT--CTA-CGAAAATGA------GTTC-AATGGGCTTTaaactaattttttttgttctacgaaaatgagttcaatgggcttt
gi|30 : cattatgtggaactaaatgatacaaaacaacaaatcattttgaactttcttcatagtcacgtatgcaatacatacaatttgtaataaaaaaaaatcaggaatatctgttttttttgtgtttcttgttaatcacacaatttcgacgctgctagccatacacaaatcaattgtttctcatctattgacgttcatcatccaattcaacggatagttatagaggttcctactgaatacgcacgagttaattattacagagatttaatttatcatgaaatgggcatccataactggtcaaattgaaaacactggatatgttgaccgggcgggtccaacatcgtgttttcaatggcacggctgccggagcgaacatgaggattattggtaattgtttcttgtgtgttgaatactatgagtaggaagagatatagggatttatgacaagatatgacgtgtttttaagtcttggcatgagtattagggaaaccataagtccgcatgatgcaccaataaacctaggaccaaaccgacagggacaaacctatctttatgattgtcgatatccaaaaaaacatggtctggtaatctacaactctagacgagagtttgagatgtcattgaactgaacgattga------AAA-----ATA------TATTTTTC-TCT-----CTA-CGAAAATGA------GCTC-AATGGGCTTTC
gi|31 : A---T--GTTGGACCGCCCAG-TCCAAC-A-T--GAA--TTCAAT-GGATCGg
gi|32 : gtcaaTTTTT-TCT-----CTA-CGAAAATGA------GCTC-AATGGGCTTTC
gi|33 : tatattTTTTT-TCT-----CTA-CGAAAATGA------GCTC-AATGGACTTTCg
gi|34 : attt-------TATTTTTT-TCT-----CTA-CTAAAATGA------GCTC-AATGGGCTTTCg
gi|4 : aATTA-TG-TGGATATAAAT-G-ATACAAAAACAACAA----TTTTGAACTTTCTTCA-TAGT------ATTGCATGT-A-TA-AT-CAATT-GTAATA-AAAAACAA--CTA-ACAGG-AATATCTGGGGGGG--TTTTTTTTAATGTTT------------T-------------ACTTT-----------AATCACAATTTCA-A-TCAATTGTTCCTTCAC--T---ATTGACG---AGTCATA-CCAATTCA-CGGATAGTAAC-GAG--ATAC--T-CCGAATACC---C-ACTAAT---T---------------------------AT-GA--------TAG-----AA----CACG-GCA---TGATTGTCGATATCCATTAAAACAg
gi|4 : agagttgacattatatcagattagcacgttcgttacgcgggaagattagaacacgaatattgaatctttcgtgcattcgattaagcgacatggggtacacaattgcaagtgttaaataaaatatgaaattgtcaaaacgagtcgaacattggcctagtgtctcgcaagtgtactcctcattttagcaggccgaaggcattccaacattttggttcgaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTT-ATGATAGAACACGGCAT-GA-TTGTCGATATCCA-TTAAAACAT-ATCT--GT-AATCTA-TAACGTCT----AGACG-G-AGTTT-G--ACATGTCATT--AC-------------TGAAC-ATTGC--AAAATATAAA------------ACGCG--AAA-GTTT-CGCGTTTA--TT--CGCG-AAGTTTACGCGT---T-tatctgtaatctataacgtctagacggagtttgacatgtcattactgaacattgcaaaatataaaacgcgaaagtttcgcgtttattcgcgaagtttacgcgttat
gi|5 : agagttgacattatatcagattagcacgttcgttacgcgggaagattagaacacgaatattgaatctttcgtgcattcgattaagcgacatggggtacacaattgcaagtgttaaataaaatatgaaattgtcaaaacgagtcgaacattggcctagtgtctcgcaagtgtactcctcattttagcaggccgaaggcattccaacattttggttcgaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnattatgtggatataaatgatacaaaaacaacaattttgaactttcttcatagtattgcatgtataatcaattgtaataaaaaacaactaacaggaatatctgggggggttttttttaatgttttactttaatcacaatttcaatcaattgttccttcactattgacgagtcataccaattcacggatagtaacgagatactccgaatacccactaaAGTCAATAGGCCTAAATGTTT-TG-TTATACCTCCACATTA-TG-TGGATATAAAT-G-ATACAGAAACAACAA----TTTTGAAC-TTCTTCA-TGGT------AATGCATGT-A-TA-AT-CAATT-GTAATA-AAAAAAAACTAT--ACAGG-AATTTCT------G-----TTTTT-ATGTTT------------T-------------ACTTT-----------AATCACAATTTCA-A-TC-ATTGTTCC-TCAC--T---ATTGATG---AGTCATA-CCAATTCA-CGGATAGCTAC-AAG--TTAC--T-ACAAATA-C---C-A--ACC---TA--------------------GTT--TAT-GA--------TAG-----AA----CACT-ACAAGATT---GTCGATATCCATTAAAACAT---Gat
gi|5 : agaattgacattatatcagattagcacgttagttacacgggtagattagagaatgaatattgaatctttcatgcattcgattaagcgacacgaggtacacgattgcaagtgttgtaaatacatgtaaaaatgtgaaattgtcgaaacgagtcgaacattggcgtagtgtctcgcaagtgtactcctcattttagcaggtcgaaggcattccaacatttggttcgagggtctatcatagcccatgttgccgagacttcACCAACCTA-GTTT-ATGATAGAACACTACAA-GA-TTGTCGATATCCA-TTAAAACAT-GTCT--GT-AATCTA-CAATGTCT----AGACG-G-AGTTT-G--ACATGTCATT--AC-------------TGAAC-ATTGC--AA--tctgtaatctacaatgtctagacggagtttgacatgtcattactgaacattgcaaaat
gi|6 : agaattgacattatatcagattagcacgttagttacacgggtagattagagaatgaatattgaatctttcatgcattcgattaagcgacacgaggtacacgattgcaagtgttgtaaatacatgtaaaaatgtgaaattgtcgaaacgagtcgaacattggcgtagtgtctcgcaagtgtactcctcattttagcaggtcgaaggcattccaacatttggttcgagggtctatcatagcccatgttgccgagacttcagtcaataggcctaaatgttttgttatacctccacattatgtggatataaatgatacagaaacaacaattttgaacttcttcatggtaatgcatgtataatcaattgtaataaaaaaaaactatacaggaatttctgtttttatgttttactttaatcacaatttcaatcattgttcctcactattgatgagtcataccaattcacggatagctacaagttactacaaatT---ATTGACG---AGTCATA-CCAATTCA-CGGATAGTTAC-GG----TAT--T-CCAAATA-C---CTACGAAT---AA---------------------AT--CATTGA---------AAT----GA----CATC-ATA--CTG---GTC---AT---TGAAA-CAC---GA---T--GTTG-ACTGGGCGG-TCCAAC-A-TCAGAGTTTTCAAT-GGACCGGCA-GTCC--AAGG--C-GAACATCGGGATT-ATCGGT--C-TTTATCT--TGTGTTAAAT--TA----TATAGGAAT-AACATATAGG-GATATAAAAAAAAAATA--TGACGTCGTGTTT--A--TCTTG-CGTGA-CGCAATAG-ATATAAC-ATAAGTCAGCA--GCATGTGCC-ACAAA-CCTA------AAATCTT-ATGTGGGACAAACCTA-GTTT-ATGATAGAAC--TACAAAGA-TTGTCGATATCCA-TTAAAACAT-GTCT--GT-AATCTA-CAACTTCT----AGACG-G-AGTTT-G--ACATGTCATT--AC-------------TGAAC-ATTGC--AA--TACAAATCGTG-TT-TATACGCGCAAA--GTTTACGCGTTAA--TA--CGCAAAAGTTTACGCGT---T-AATTCGC-GAAAGTTT-GCG--TA--ATA-AC--GAAAATATTTTTT-TTTC---T--T--A--A----CGaat
gi|7 : AGTCAATAGGCTTAAATGTTT-TG-TTATACCTTCACATTA-TG-TGGATATAAAT-G-ATACAAAAACAACAA----TTTTGAACTTTCTCCA-TGGT------AATGCATGT-A-TA-AT-CAATT-GTAATA-AAAA--AA--CTACACAGG-AATATCT------G----TAATTT-ATGTTT------------T-------------ACTTT-G---AT-------CACAATTTCA-A-TCAATTGTTCCTTCGC--T---ATTGATG---AGTCATA-CCAATTCA-GGAATAGTTAC-AAG--TTAC--T-CCGAATA-C---C-A--ACC---TA--------------------GTT--TAT-GA--------TAG-----AA----CACT-ACA--aaaatgagctcaatgggctttcg
gi|7 : atgaatattgaatctttcgtgcattcgatttaaaagcgacacagggtacacgattgctagtgttgtaaataaaatgtgaaattatcgagacgagtcgaacattggcctagtgtctcgcaagtgtactcctcattttagcaggtcgaaggcattccaacattttggttcgaggttctatcatagcgcatgttgcccgagacttcACCAACCTA-GTTT-ATGATAGAACACTACAA-GG-TTGTCGaggttgtcg
gi|8 : atgaatattgaatctttcgtgcattcgatttaaaagcgacacagggtacacgattgctagtgttgtaaataaaatgtgaaattatcgagacgagtcgaacattggcctagtgtctcgcaagtgtactcctcattttagcaggtcgaaggcattccaacattttggttcgaggttctatcatagcgcatgttgcccgagacttcagtcaataggcttaaatgttttgttataccttcacattatgtggatataaatgatacaaaaacaacaattttgaactttctccatggtaatgcatgtataatcaattgtaataaaaaaactacacaggaatatctgtaatttatgttttactttgatcacaatttcaatcaattgttccttcgctattgatgagtcataccaattcaggaatagttacaagttactccgaat-AAAAACAA--TT--ACAGG-ATTATCT----------TTTTTTT-ACTTTT------------ATCAC---------AATTTCA---CCAGC-AGCCATAA-A-CA-ACTCGATTGTTCCTTCACTAT-----TGATG---A-------CCAATTCC-AGGATAGTTAC-GAG--TTAT--T-CCGAATA-C---CCACGAATAGACA--------------------T-T--CAT-GA---------AAT----GA----CATC-ATA--CTG---GTCCAT-----TGAAAACAC---GA---T--GTTG-ACTGGGCGT-TCCAAC-A-TC-GAGTTTTCAAT-GGACCGGCA-GTCC--AAGG--C-GAACATCGGGATT-ATTGGT--C-TTTATCT--TGTGTTGAA-----GT-ATATAGAGAATAACATACAGG-GAT---ATAACAAAATA--TGACGTCGTGTTT--A--TCTTG-CGTGA-CGTA-TAGGATATAGC-ATAAGTCCAAA---CATGTGCT-ACAGA-CCTAAGA-C-AAATCTA--TGTGGGACAAACCTA-GTTT-ATGATAGAACACTACAA-G----------------TTAAAATAT-GTCT--GT-GATCTA-
gi|9 : --GCATGCACC-ATAAA-CCTAGGA-C-AAACCTA--CATGGGACAAACCTA-CTTT-ATGAT-----------------TGTCGATATCCA---AAAACAT-GTCT--GT-AATCTA-CAACGTCT----AGACG-G-AGTTT-G--AGATGTCATT--AC-------------TGAAC-ATTGC--AA----------GTG-TT-TATACGCG--AAC-GTTT-CGCGTTAA--TC--CACGAAATTTT-CGCGT---T-TATTCGC-AAAAGTTACGCGT-TA--ATTTGC--GAAA--------C-TTTCGCGTAAT--A--A----CGCGAAA--
gi|9 : GTGT---T-TATACGCG-AACGTTTCGCGT-TA--ATCCAC--GAAA--------T-TTTCGCGT--T--T--ATT--CGCAAAA--GT-TAC-GCG--T-T-AATTTGCG-AA-----AC------------------------TTTC-----GCGTAAT---A----------------AC-GCG-----AAA-----AA-------TAATTTTT-TTTGT---CTA-CGAAAATGA------GTTC-AATGGGCTTTCaataattttttttgtctacgaaaatgagttcaatgggctttc
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): TGATTCGTGTAAATTTTGCGTTAATATTCGCGGATTTCTTAAATGTATTTAGTTTTTTCGTTATAACACGAAAAAATGTTTCATAGTTTTTTTTTCAGCTTACAAAAATTATCATTGTGTTCAATGGGCTTTCGC
Unaligned ( gi|21 ): TCATATGCGAAAGATTTGTGTCATTATGCAAAAATATCGCTTAATTACGCTACATTTTTTTTTCATACAAAAATGAACTTAGAACATACATA
Unaligned ( gi|27 ): AACTGAGAATAGACTGAAGTTGAAATTTTGAATCTTAACTACTGACCTTTCAACTACA
Alignments
lowQualScore : 111111111111111111111111111111111111111111
lowQualScore : 2222 1 111111 111 2222222222 1 000000000000000000000000000000000000000000 333 1 11 111 111 11111 7777777777777777777777777777777777777777777777777777777777 22222222 1111 44444444444 111 2222222222 222 111 11 22222 1 1 1111 111111 22222 11 2222222222222 22222222222 222222 111 33333333333 1111 6666666666666666666666666 111111 44444444444444444444 222222 11111111111111 22222 111111
lowQualScore : 8 8 0 88 5 5 5 5 4444 1 666666 5 5 5 5 5 4 3 777 222 4 0000000000 0 222222222222222222222222222222222222222222 888 5 0 99 777 333 6 4 4 8 111 66 4 4 22222 2 0 0000000000000000000000000000000000000000000000000000000000 8 1 88 555 99999999 7777 888888 3 6 3 3 3 3 3 4 88888888888 2 77 222 5 77 0 5555555555 3 99 8 000 6 111 55 77777 6 6 3 5 6 1 1111 5 5 000000 22222 4 3 6666 3 3 77 4 99 4 4 3 9999 4 4 4 66 00 4444444444444 4 66 33333333333 5 5 3 444444 4 1 333 8 3 6666 99 66 2 99 2 33 2 99999999 2 77777777777 77 9999 0 66 999 4 4 8888888888888888888888888 4 6 000000 66666666666666666666 4 666666 88888888888888 6 3 22222 3 333333 3
lowQualScore : . . . .. . . . . .... . ...... . . . . . . . ... ... . .......... . .......................................... ... . . .. ... ... . . . . ... .. . . ..... . . .......................................................... . . .. ... ........ .... ...... . . . . . . . . ........... . .. ... . .. . .......... . .. . ... . ... .. ..... . . . . . . .... . . ...... ..... . . .... . . .. . .. . . . .... . . . .. .. ............. . .. ........... . . . ...... . . ... . . .... .. .. . .. . .. . ........ . ........... .. .... . .. ... . . ......................... . . ...... .................... . ...... .............. . . ..... . ...... .
lowQualScore : 0 0 8 22 7 7 7 7 3333 4 444444 0 0 0 0 0 4 9 111 444 4 8888888888 0 999999999999999999999999999999999999999999 999 0 0 00 000 999 7 4 4 9 777 11 4 4 99999 5 8 1111111111111111111111111111111111111111111111111111111111 0 4 66 888 44444444 6666 000000 8 7 3 3 3 2 3 0 55555555555 5 99 666 0 99 1 1111111111 8 44 0 000 4 888 88 88888 7 7 3 5 7 0 6666 7 7 111111 99999 0 6 6666 6 6 44 0 55 0 0 9 4444 4 4 4 11 66 4444444444444 4 11 44444444444 0 0 4 111111 4 0 111 0 3 5555 22 11 9 66 0 77 3 77777777 7 66666666666 99 8888 1 11 999 4 4 2222222222222222222222222 0 4 777777 44444444444444444444 0 888888 22222222222222 0 1 77777 1 111111 1
consensus : NNNNNNNNNNNNNNNNNNNNNNNNTTCCAAAGTCAATAGGCCTAAATGTTT-TG-TTATACCTCCACATTA-TG-TGGATATAAAT-G-ATACAAAAACAACAA----TTTTGAACTTTCTTCA-TAGT------AATGCATGT-A-TA-AT-CAATT-GTAATA-AAAAACAA--NT--ACAGG-AATATCT------G--TTTTTTTT-ATGTTT------------A-------------AATTTCG---CT-GC-AGCCATAAT-TCA-A-TCAATTGTTCCTTCACTAT---ATTGACG---AGTCATA-CCAATTCA-CGGATAGTTAC-GAG--TTAC--T-CCGAATA-C---C-ACGAAT---TA--------------------TAT--CAT-GA--------TAGT----GA----CATC-ACA--CTG---GTCCATAT---TGAAAACAC---GA---T--GTTGGACCGGGCGG-TCCAAC-A-TC-GAGTTTTCAAT-GGACCGGCA-G--C--GAGG--CCGAACATCGGGATT-GTTGGT--C-TTTTTCT--TGTGTTGAAT--TAGTGATATAGAGAA-AACATATAGG-GATNTAATAACAAGATA--TGACGTCGTGTTTTTA--TCTTGGCGTGA-CGTA-TAGGATATAAC-ATAAGTCCGNA--GCATGCGCC-ACAAA-CCTAGGA-C-AAACCTA-ATGTGGGACAAACCTA-GTTT-ATGATAGAACACTACAA-GA-TTGTCGATATCCA-TTAAAACAT-GTCT--GT-AATCTA-CAACGTCT----AGACG-G-AGTTT-G--ACATGTCATT--AC-------------TGAAC-ATTGC--AA--TACAAATCGTG-TT-TATACGCG--AA--GTTT-CGCGTTNATC--CGCGAAAGTTT-CGCGTT-TAT---TCGCGGAAAGTTNCGCGT-TA--ATNCGC--GAAA--------T-TTTCGCGT--TA--A----CGCGAAA--GTT-C-GCG--T-T-A-TTCGCG-AA--GTTACGC-----TATTCG----GCG-AAGTTTC-----GCGTAAT--TA----------------AC-GC------AAA-----AT-------TAATTTTT-TCT-----CTA-CGAAAATGA------GCTC-AATGGGCTTTC
Reference ( family-5944 ) : NNNNNNNNNNNNNNNNNNNNNNNNTTCCAAAGTCAATAGGCCTAAATGTTT-TG-TTATACCTCCACATTA-TG-TGGATATAAAT-G-ATACAAAAACAACAA----TTTTGAACTTTCTTCA-TAGT------AATGCATGT-A-TA-AT-CAATT-GTAATA-AAAAACAA--NT--ACAGG-AATATCT------G--TTTTTTTT-ATGTTT------------A-------------AATTTCG---CT-GC-AGCCATAA-TTCA-A-TCAATTGTTCCTTCACTAT---ATTGACG---AGTCATA-CCAATTCA-CGGATAGTTAC-GAG--TTAC--T-CCGAATA-C---C-ACGAAT---TA--------------------TAT--CAT-GA--------TAGT----GA----CATC-ACA--CTG---GTCCATAT---TGAAAACAC---GA---T--GTTGGACCGGGCGG-TCCAAC-A-TC-GAGTTTTCAAT-GGACCGGCA-G--C--GAGG--CCGAACATCGGGATT-GTTGGT--C-TTTTTCT--TGTGTTGAAT--TAGTGATATAGAGAA-AACATATAGG-GATNTAATAACAAGATA--TGACGTCGTGTTTTTA--TCTTGGCGTGA-CGTA-TAGGATATAAC-ATAAGTCCGNA--GCATGCGCC-ACAAA-CCTAGGA-C-AAACCTA-ATGTGGGACAAACCTA-GTTT-ATGATAGAACACTACAA-GA-TTGTCGATATCCA-TTAAAACAT-GTCT--GT-AATCTA-CAACGTCT----AGACG-G-AGTTT-G--ACATGTCATT--AC-------------TGAAC-ATTGC--AA--TACAAATCGTG-TT-TATACGCG--AA--GTTT-CGCGTTNATC--CGCGAAAGTTT-CGCGTT-TAT---TCGCGGAAAGTTNCGCGT-TA--ATNCGC--GAAA--------T-TTTCGCGT--TA--A----CGCGAAA--GTT-C-GCG--T-T-A-TTCGCG-AA--GTTACGC-----TATTCG----GCG-AAGTTTC-----GCGTAAT--TA----------------AC-GC------AAA-----AT-------TAATTTTT-TCT-----CTA-CGAAAATGA------GCTC-AATGGGCTTTC
gi|1 : TTTCAAAGTCAATAGGTCTAAATGTTT-TG-TTATACCG------TA-TG-TGGATATAAAT-GGATACAAAAACAACAA----TTTTGAACTTTCTTCAGTTGT------AATGCATGTCA-TA-AT-CAATT-GTAATT-AAAAACCA--TT--ACAGG-AAAATCT------G--TTTTGT---ATGTTT------------AG------------AAATTCA---CT-GC-AGC-ATAA---CA-A-TCAATTGTTCCTTCAC-AT---AT-GACG---AGCCATA-TCAA---A-CGGATAGTTAA-GAG--TTAG--T-CCGAATA-C---C-ACGAAT---TA--------------------TAT--CAT-GA--------TAAT----AA----CATC-ACA--CTG---GTCCATAT---TGAAAACACA--GAATGC--GTTGG-CCGGACGG-TCCAAC-A-TC-GAGTTTTCAATGGGACCGGCA-G--C--GAGG--CGGAAC-TCGGGATT--TT-GT--C-TTTTTCT--TGTGTTGAAT--TAGTGAT-TAGAGAT-AACATATA-G-GATG-AATAACAA-ATAATTG--GTCCTGTTTT----TCTT-GCGTGACCGTA-TAGGA-ATAAC-ATAAGTCCAAG--GCATGTG-C-ACAAA--CTAGGA-C-AAACTTA-ATGTGGGACAACCGGA-GTTTAATGATAGAA-AC-ACAA-GAGTTGTCGATATCCATTTAAAACAT-GTCT--GTGAATCTA-C-ACG-CTCGCAAGACG-GAAGTTT-GTAACATGTCATC--ACGTTCGACACGAAACGAGC-ATTGC--AA--TACAAATCGTGATT-TATACGCG--AC--GTTT-CGCGTTTACCTTCGCGAAAGTTT-CGCGTT-TAA---TTGCAGCAAGTTACGCGT-TA--ATTCGC--GAAG--------T-TTCCGCGT--T--------CGCGAAA--GTT-C-GCG--T-A-A-TTCGCG-AA--GTTACGC-----TATTCG----GCA-AAGTTAC-----GCGAAAT--TA----------------AC-GC------AAA-----AT-------TAATTTTT-CCT-----CTA-CGAAAATGAAG----ACTC-AATGGGCTTTC
gi|10 : ggcagattctagcttgttttttctGCGTGA-CGTA-TAGGATATAAC-ATAAGTCCAAA--A-ATGTGCC-ACAAA-CCTA---------------TGTGGAACAAACATT-GTTT-ATGATAGAACACTACAA-GA-TTGTCGATATCCA-TTATAACAT-GTCT--GT-AATCTA-TAACGTCT----AGACG-G-AGTTT-G--ACATGTCATT--AC-------------TGAAC-ATTGC--AA--TACAAATCGTG-TT-TATACGCGA-AA--GTTA-CGCGTTTATT--CGCAAAAG-TT-CGCGT
gi|10 : T-C-GTG--T-TTA-TACGCG-AAA-GTTACGCGTT--TATTCG-----CA-AAAGTTC-----GCGTAAT---A----------------AC-GC------AAA-----TT-------TT-TTTTT-TCT-----CTA-CGAAAATGA------GCTC-AATGGGCTTTCaataacgcaaattttttttttctctacgaaaatgagctcaatgggctttcg
gi|11 : gcgtgacgtataggatataacataagtccaaaaatgtgccacaaacctatgtggaacaaacattgtttatgatagaacactacaagattgtcgatatccattataacatgtctgtaatctataacgtctagacggagtttgacatgtcattactgaacattgcaatacaaaAACCTA-GTTT-ATGATAGAACACTACAA-GA-TTGTCGATATCCA-TTAAAACAT-GTCT--GT-AATCTA-CAATGTCT----AGACG-G-AGTTT-G--ACATGTCATT--AC-------------TGAAC-ATTGCAAAA--TATAAATg
gi|12 : TTCCAAAGTCAATAGGCCTAAACTTTT-TG-T-ATACCTCCACATTA-TG-TGGATATAAAT-G-ATACAAAAACAACAA----TTTTGAACTTTCTTCA-TAGT------ATTGCATGT-A-TT-AT-CAATT-GTAATG-AAAAACAA--TT--ACAGG-GTTAT-T------AATTTTTTTTT-AC-TTT------------AATCAC--------AATTTCAC--CT-GC-AGCCATAA----ACA-TCAATTGTTCCTTCACTAT---nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntaacgcga
gi|13 : agaTTGCG-TG-TAAACGCTT-AA--TTTT-CGCGATACAA--CACGAAAATAA-CGAGTC-TAT---TCGTGTAAA-TTTTGCGT-TAATATTCGC--GGA-----------TTTC---T--TA--A----tg
gi|13 : TTGCGTGT-AA--A--CGC--TTAA--------T-TTTCGCGA--TACAA----CACGAAA--ATAAC-GAG--TCT-A-TTCGTGTAA--ATTTTGCGTTAATATTCG-----CG-GA-TTTCTTAAAATGTATT--TAGTTTTTTCGTTATAACAC-GA------AAA-----ATGTTTCAATAGTTTTT-TTTTTCAGCTA-CAAAAATTATCATGTGTTC-AATGGGCTTTaatgtatttagttttttcgttataacacgaaaaatgtttcaatagttttttttttcagctacaaaaattatcatgtgttcaatgggcttt
gi|14 : TTTTGCGT-GA--GAACGC--GGAA--------T-TTTCG------A--A----CGCGAAA--GT--C-GGGGTT-T-A-TTCGCG-AAA-GCTTCGCATT--TATTCG-----CGTAAGTTTC-----GCGTTATA-TA----------------AC-GC------GAACAATGAT-------TA-TTTTT-TAG-----CTA-TGAAAAGTC------GCTC-AATG
gi|15 : attaaaactgtttataaaacaagtaAAAATT--GCATCTA--CTAGGT--GAAA--------T-TT-CGCGTCATA--A----CGCGAAGCCGTA-A-GCG--T-TTA-TTTGCG-AG--CGTACG-------AT---------G-ATATAT--------GTAAC--------------------AC-GA------AAA-----AT---------ATTGTTATAG-----CTAGCGAAAATTA------GCTCAAATGGGCTTTCatgattt
gi|17 : aaaaG---GTCCAC-----TGGAAACAT---GA---T--TATGGACCGGGTGG-TCCAAC-A-TC-GACTTTTTAAT-TTACCTGCA-G--T--------CCGAACATGGGGATT-GTTGGA--C-TTTTTat
gi|18 : aatcTG---GTC---AT---TAAAACCTT---GA---TT-GTTGGACCGCCCAG-TCCAAC-A-T--GAA--TTCAAT-GGATCGggttattccattatgtag
gi|18 : caaA---T--GTTGGACTGGGCGG-TCCAACAA-TC-AAGGTTTTAAT--GACC-ACA-G--T--------CCCAACATCGGGATT-GCTGGA--CGCTTTTCT--TGTATCTAAT--TAcagtcccaacatcgggattgctggacgcttttcttgtatctaattata
gi|19 : caacgatccattgaattcA--CCG---GTCCAT-----TGAAAA--------------GTTGGACCGGGCGG-TCTAAC-ACTC-GGGGTCT-AA---------CA-T--T--GAGATTTCAAACATCGGGA----TTGGA--C-TTTTTCT--TGCAT----T--CAGTGATATAGta
gi|2 : aaTGTTTCTGATTATACCTC-ACATTAATGGTGGAAATAAATTG-ATACAGAAACAACAAATAATTTTGAACTTTCTTCAATAGTCAACGTAATGCA----A-TA-AT-CAATT-GTAATATAAAAAAAA--AT---CAGGGAATATCT------G--TTTTTTTTTGTGTTT------------ACTTCTCAATCACCAATTTCGACGCT-GCGAGCCATAA---CA-AATCAATTGT--CTTCCCCATCCTATTGACGTT-A-TCACATCCAATTCA-CGGATAGTTATAGAGGTTTACACT-CTGAATA-CAGCT-ACGAGT---TAAAT-----------------TATTACAC-GAGATTTAATTAGTTCATGAAATGCATCCATA--CTG---GTCAA-AT---TGAAAACACTGGAA---T--GTTGAAC-GGGCGGGTCCAAC-A-TC-GTGTTTTCAAT-G--CCGGCATGTCC--GTGG--GCGAACATGAGGATTTATTGGTA-T-TTTTTCT--TGTGGTGAATA-TA-TGA---AGAGAA-GATATATAGGCGATTTAATGACAAGAT---TGA--TCGTGTTTTTA--TCTTGGCATGA-CGTA-TAGGA---AACCATAAGTCCGCATAGCATGCACC-ATAAAACCTAGGA-CCAAACC---GTACAGGGCAAACCTA-CTTT--TG---------------GA-TTGTCGATATCAA---AAAACAT-GTCCTGGT-AATCTAGCAAC-TCT----AGACG-G-AGTTTAG--AGATGTCATGA-AC-------------TGAAC-ATTGC--A-----------GTG-TTATATACGCG--GAACGTTT-CGCGTTAATCCACACGAAATTTT-CGCCGT-TAT---TCGCAAAAAGTTAGCCGT-TAG-ATGTGC--GAAA--------C-TTT-GCGTAATA--ACAACCGCGAGA--
gi|2 : GTGTTATAT---ACGCGGAACGTTTCGCGT-TA--ATCCACACGAAA--------T-TTTCGC-----------------------------CG--T-T-A-TTCGCA-AAAAGTTA-GC-----CGTTAGATGTGCG-AAACTTT-----GCGTAATAACA----------------ACCGCGAG---AAA-----AA-------TAATTTTT-TTTGTT--CTA-CGAAAATGA------G-TT-AA-GGGCTTTaaaataattttttttgttctacgaaaatgagttaagggcttttcgt
gi|20 : tgtttctgattatacctcacattaatggtggaaataaattgatacagaaacaacaaataattttgaactttcttcaatagtcaacgtaatgcaataatcaattgtaatataaaaaaaaatcagggaatatctgtttttttttgtgtttacttctcaatcaccaatttcgacgctgcgagccataacaaatcaattgtcttccccatcctattgacgttatcacatccaattcacggatagttatagaggtttacactctgaatacagctacgagttaaattattacacgagatttaattagttcatgaaatgcatccatactggtcaaattgaaaacactggaatgttgaacgggcgggtccaacatcgtgttttcaatgccggcatgtccgtgggcgaacatgaggatttattggtattttttcttgtggtgaatatatgaagagaagatatataggcgatttaatgacaagattgatcgtgtttttatcttggcatgacgtataggaaaccataagtccgcatagcatgcaccataaaacctaggaccaaaccgtacagggcaaacctacttttggattgtcgatatcaaaaaacatgtcctggtaatctagcaactctagacggagtttagagatgtcatgaactgaacattgca--AA--TTTT-CGCGTTTATT--TGCGAAAGTTT-TGCGTT-TAA---TCGCGG-AAGTCACGCGT-AT--ATTTGC--AAGA--------A-TTACGCGTA-TAT-C----CTCGAAA--GTT-tcgt
gi|22 : tttattctccta--GGAA--------TGTTTCGCGT--TATAA----CGCGAAA--GTT------------A-TACGCG------TT---------TATTCA----TGA-AAGGTTC-----GCGCAAT--TA----------------AC-GC------AAA-----Atc
gi|23 : acataattatattttaaatTC-AAA--C-A---GTCCAT-----TGAAAACAT---GA---T--GTTGGACCAGGCGG-TCCAAC-A-TC-AAGTTCTCAAT-GGACTGGCA-G--T--------CCAAACATCTGGATT-GTTG
gi|24 : g----CGTC-AAA--CTG---GTCCATG-----GAAAACA---------T--GTTGGACCAGGCAG-TCCAAC-A-TT-GAGTTTTCAAT-GGACCAGCA-G--T--------CCGAACATCAGGATT-GTTG
gi|25 : GCGAAAGATT-CGCATT-AATTGATCGT-GAAAGTCTTGCGT-TA--CAACGC--G--A--------T-TTT
gi|26 : CGT-----TATTAC----GCG-AAACTTT------CGTAAT---A----------------AC-GCGGA---AAA-----AA-------AAAATTTT-AC------CTA-CGAAAATGA------TCTC-AATGGGCTTTtttcaactactaaaattagctaaataggttt
gi|28 : ttcgAT---ATTGACG---AGTCATA-CCAATTCA-CGGATAGTTAC-GG----TAT--T-CCAAATA-C---C-ta
gi|29 : gctataATGC-A-TA-AT-CAATT-GTAATA-AAAAACAA--AT--ACAGG-AATATCT------G--TTTTta
gi|3 : tCATTA-TG-TGGAACTAAAT-G-ATACAAAA-CAACAAATCATTTTGAACTTTCTTCA-TAGT------CACGTATGC-AATACATACAATTTGTAATA-AAAAA-AA--AT---CAGG-AATATCT------G--TTTTTTTT-GTGTTTCTTGTTAATCACAC------------AATTTCGACGCT-GCTAGCCATAC-ACAA-A-TCAATTGTTTCT-CA-TCT---ATTGACGTTCA-TCAT--CCAATTCAACGGATAGTTATAGAGG-TTCC--TACTGAATA-CG--C-ACGAGT---TAATTATTACAGAGATTTAATTTAT--CAT-GA--------AATG----GG----CATCCATAA-CTG---GTCAA-AT---TGAAAACACTG-GA---TATGTTG-ACCGGGCGGGTCCAAC-A-TC-GTGTTTTCAAT-GGCACGGCT-G--CCGGAG----CGAACATGAGGATT-ATTGGTAAT-TGTTTCTTGTGTGTTGAATACTA-TGA-GTAG-GAA-GAGATATAGG-GATTT-ATGACAAGATA--TGA---CGTGTTTTTAAGTCTTGGCATGA--GTATTAGGG-AAACC-ATAAGTCCGCA--TGATGCACCAATAAA-CCTAGGACC-AAACCGACA---GGGACAAACCTATCTTT-AT----------------GA-TTGTCGATATCCA-AAAAAACATGGTCTG-GT-AATCTA-CAAC-TCT----AGACGAG-AGTTT-G--AGATGTCATTGAAC-------------TGAACGATTG---A-----------GTG-TT-TA-ACGCG--GAACGTTT-CGCGTTAATC--CACGAAATTTT-CGCG-T-TAT---TCGCAAAAAGTTAAGCGT-TAG-ATGTGC--G-AA--------C-TTTAGCGTAATA--ACAC-CGCGAGA--
gi|3 : GTGTT-TAA----CGCGGAACGTTTCGCGT-TA--ATCCAC--GAAA--------T-TTTCGCGT--TA--TT---CGCAAAAA-GTT-AAGCG--T-T-A------G-AT--GT--------------------GCG-AACTTTA-----GCGTAAT---A----------------AC-ACCGCGAGAAA-----AC-------TAATTTTT-TTTGTT--CTA-CGAAAATGA------GTTC-AATGGGCTTTaaactaattttttttgttctacgaaaatgagttcaatgggcttt
gi|30 : cattatgtggaactaaatgatacaaaacaacaaatcattttgaactttcttcatagtcacgtatgcaatacatacaatttgtaataaaaaaaaatcaggaatatctgttttttttgtgtttcttgttaatcacacaatttcgacgctgctagccatacacaaatcaattgtttctcatctattgacgttcatcatccaattcaacggatagttatagaggttcctactgaatacgcacgagttaattattacagagatttaatttatcatgaaatgggcatccataactggtcaaattgaaaacactggatatgttgaccgggcgggtccaacatcgtgttttcaatggcacggctgccggagcgaacatgaggattattggtaattgtttcttgtgtgttgaatactatgagtaggaagagatatagggatttatgacaagatatgacgtgtttttaagtcttggcatgagtattagggaaaccataagtccgcatgatgcaccaataaacctaggaccaaaccgacagggacaaacctatctttatgattgtcgatatccaaaaaaacatggtctggtaatctacaactctagacgagagtttgagatgtcattgaactgaacgattga------AAA-----ATA------TATTTTTC-TCT-----CTA-CGAAAATGA------GCTC-AATGGGCTTTC
gi|31 : A---T--GTTGGACCGCCCAG-TCCAAC-A-T--GAA--TTCAAT-GGATCGg
gi|32 : gtcaaTTTTT-TCT-----CTA-CGAAAATGA------GCTC-AATGGGCTTTC
gi|33 : tatattTTTTT-TCT-----CTA-CGAAAATGA------GCTC-AATGGACTTTCg
gi|34 : attt-------TATTTTTT-TCT-----CTA-CTAAAATGA------GCTC-AATGGGCTTTCg
gi|4 : aATTA-TG-TGGATATAAAT-G-ATACAAAAACAACAA----TTTTGAACTTTCTTCA-TAGT------ATTGCATGT-A-TA-AT-CAATT-GTAATA-AAAAACAA--CTA-ACAGG-AATATCTGGGGGGG--TTTTTTTTAATGTTT------------T-------------ACTTT-----------AATCACAATTTCA-A-TCAATTGTTCCTTCAC--T---ATTGACG---AGTCATA-CCAATTCA-CGGATAGTAAC-GAG--ATAC--T-CCGAATACC---C-ACTAAT---T---------------------------AT-GA--------TAG-----AA----CACG-GCA---TGATTGTCGATATCCATTAAAACAg
gi|4 : agagttgacattatatcagattagcacgttcgttacgcgggaagattagaacacgaatattgaatctttcgtgcattcgattaagcgacatggggtacacaattgcaagtgttaaataaaatatgaaattgtcaaaacgagtcgaacattggcctagtgtctcgcaagtgtactcctcattttagcaggccgaaggcattccaacattttggttcgaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTT-ATGATAGAACACGGCAT-GA-TTGTCGATATCCA-TTAAAACAT-ATCT--GT-AATCTA-TAACGTCT----AGACG-G-AGTTT-G--ACATGTCATT--AC-------------TGAAC-ATTGC--AAAATATAAA------------ACGCG--AAA-GTTT-CGCGTTTATT--CGCG-AAGTTTACGCGTT-tatctgtaatctataacgtctagacggagtttgacatgtcattactgaacattgcaaaatataaaacgcgaaagtttcgcgtttattcgcgaagtttacgcgttat
gi|5 : agagttgacattatatcagattagcacgttcgttacgcgggaagattagaacacgaatattgaatctttcgtgcattcgattaagcgacatggggtacacaattgcaagtgttaaataaaatatgaaattgtcaaaacgagtcgaacattggcctagtgtctcgcaagtgtactcctcattttagcaggccgaaggcattccaacattttggttcgaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnattatgtggatataaatgatacaaaaacaacaattttgaactttcttcatagtattgcatgtataatcaattgtaataaaaaacaactaacaggaatatctgggggggttttttttaatgttttactttaatcacaatttcaatcaattgttccttcactattgacgagtcataccaattcacggatagtaacgagatactccgaatacccactaaAGTCAATAGGCCTAAATGTTT-TG-TTATACCTCCACATTA-TG-TGGATATAAAT-G-ATACAGAAACAACAA----TTTTGAAC-TTCTTCA-TGGT------AATGCATGT-A-TA-AT-CAATT-GTAATA-AAAAAAAACTAT--ACAGG-AATTTCT------G-----TTTTT-ATGTTT------------T-------------ACTTT-----------AATCACAATTTCA-A-TC-ATTGTTCC-TCAC--T---ATTGATG---AGTCATA-CCAATTCA-CGGATAGCTAC-AAG--TTAC--T-ACAAATA-C---C-A--ACC---TA--------------------GTT--TAT-GA--------TAG-----AA----CACT-ACAAGATT---GTCGATATCCATTAAAACAT---Gat
gi|5 : agaattgacattatatcagattagcacgttagttacacgggtagattagagaatgaatattgaatctttcatgcattcgattaagcgacacgaggtacacgattgcaagtgttgtaaatacatgtaaaaatgtgaaattgtcgaaacgagtcgaacattggcgtagtgtctcgcaagtgtactcctcattttagcaggtcgaaggcattccaacatttggttcgagggtctatcatagcccatgttgccgagacttcACCAACCTA-GTTT-ATGATAGAACACTACAA-GA-TTGTCGATATCCA-TTAAAACAT-GTCT--GT-AATCTA-CAATGTCT----AGACG-G-AGTTT-G--ACATGTCATT--AC-------------TGAAC-ATTGC--AA--tctgtaatctacaatgtctagacggagtttgacatgtcattactgaacattgcaaaat
gi|6 : agaattgacattatatcagattagcacgttagttacacgggtagattagagaatgaatattgaatctttcatgcattcgattaagcgacacgaggtacacgattgcaagtgttgtaaatacatgtaaaaatgtgaaattgtcgaaacgagtcgaacattggcgtagtgtctcgcaagtgtactcctcattttagcaggtcgaaggcattccaacatttggttcgagggtctatcatagcccatgttgccgagacttcagtcaataggcctaaatgttttgttatacctccacattatgtggatataaatgatacagaaacaacaattttgaacttcttcatggtaatgcatgtataatcaattgtaataaaaaaaaactatacaggaatttctgtttttatgttttactttaatcacaatttcaatcattgttcctcactattgatgagtcataccaattcacggatagctacaagttactacaaatT---ATTGACG---AGTCATA-CCAATTCA-CGGATAGTTAC-GG----TAT--T-CCAAATA-C---CTACGAAT---AA---------------------AT--CATTGA---------AAT----GA----CATC-ATA--CTG---GTC---AT---TGAAA-CAC---GA---T--GTTG-ACTGGGCGG-TCCAAC-A-TCAGAGTTTTCAAT-GGACCGGCA-GTCC--AAGG--C-GAACATCGGGATT-ATCGGT--C-TTTATCT--TGTGTTAAAT--TA----TATAGGAAT-AACATATAGG-GATATAAAAAAAAAATA--TGACGTCGTGTTT--A--TCTTG-CGTGA-CGCAATAG-ATATAAC-ATAAGTCAGCA--GCATGTGCC-ACAAA-CCTA------AAATCTT-ATGTGGGACAAACCTA-GTTT-ATGATAGAAC--TACAAAGA-TTGTCGATATCCA-TTAAAACAT-GTCT--GT-AATCTA-CAACTTCT----AGACG-G-AGTTT-G--ACATGTCATT--AC-------------TGAAC-ATTGC--AA--TACAAATCGTG-TT-TATACGCGCAAA--GTTTACGCGTTAATA--CGCAAAAGTTTACGCGTT-AAT---TCGC-GAAAGTTT-GCG--TA--ATA-AC--GAAAATATTTTTT-TTTC---T--TA--A----CGaat
gi|7 : AGTCAATAGGCTTAAATGTTT-TG-TTATACCTTCACATTA-TG-TGGATATAAAT-G-ATACAAAAACAACAA----TTTTGAACTTTCTCCA-TGGT------AATGCATGT-A-TA-AT-CAATT-GTAATA-AAAA--AA--CTACACAGG-AATATCT------G----TAATTT-ATGTTT------------T-------------ACTTT-G---AT-------CACAATTTCA-A-TCAATTGTTCCTTCGC--T---ATTGATG---AGTCATA-CCAATTCA-GGAATAGTTAC-AAG--TTAC--T-CCGAATA-C---C-A--ACC---TA--------------------GTT--TAT-GA--------TAG-----AA----CACT-ACA--aaaatgagctcaatgggctttcg
gi|7 : atgaatattgaatctttcgtgcattcgatttaaaagcgacacagggtacacgattgctagtgttgtaaataaaatgtgaaattatcgagacgagtcgaacattggcctagtgtctcgcaagtgtactcctcattttagcaggtcgaaggcattccaacattttggttcgaggttctatcatagcgcatgttgcccgagacttcACCAACCTA-GTTT-ATGATAGAACACTACAA-GG-TTGTCGaggttgtcg
gi|8 : atgaatattgaatctttcgtgcattcgatttaaaagcgacacagggtacacgattgctagtgttgtaaataaaatgtgaaattatcgagacgagtcgaacattggcctagtgtctcgcaagtgtactcctcattttagcaggtcgaaggcattccaacattttggttcgaggttctatcatagcgcatgttgcccgagacttcagtcaataggcttaaatgttttgttataccttcacattatgtggatataaatgatacaaaaacaacaattttgaactttctccatggtaatgcatgtataatcaattgtaataaaaaaactacacaggaatatctgtaatttatgttttactttgatcacaatttcaatcaattgttccttcgctattgatgagtcataccaattcaggaatagttacaagttactccgaat-AAAAACAA--TT--ACAGG-ATTATCT----------TTTTTTT-ACTTTT------------ATCAC---------AATTTCA---CCAGC-AGCCATAA-A-CA-ACTCGATTGTTCCTTCACTAT-----TGATG---A-------CCAATTCC-AGGATAGTTAC-GAG--TTAT--T-CCGAATA-C---CCACGAATAGACA--------------------T-T--CAT-GA---------AAT----GA----CATC-ATA--CTG---GTCCAT-----TGAAAACAC---GA---T--GTTG-ACTGGGCGT-TCCAAC-A-TC-GAGTTTTCAAT-GGACCGGCA-GTCC--AAGG--C-GAACATCGGGATT-ATTGGT--C-TTTATCT--TGTGTTGAA-----GT-ATATAGAGAATAACATACAGG-GAT---ATAACAAAATA--TGACGTCGTGTTT--A--TCTTG-CGTGA-CGTA-TAGGATATAGC-ATAAGTCCAAA---CATGTGCT-ACAGA-CCTAAGA-C-AAATCTA--TGTGGGACAAACCTA-GTTT-ATGATAGAACACTACAA-G----------------TTAAAATAT-GTCT--GT-GATCTA-
gi|9 : --GCATGCACC-ATAAA-CCTAGGA-C-AAACCTA--CATGGGACAAACCTA-CTTT-ATGAT-----------------TGTCGATATCCA---AAAACAT-GTCT--GT-AATCTA-CAACGTCT----AGACG-G-AGTTT-G--AGATGTCATT--AC-------------TGAAC-ATTGC--AA----------GTG-TT-TATACGCG--AAC-GTTT-CGCGTTAATC--CACGAAATTTT-CGCGTT-TAT---TCGC-AAAAGTTACGCGT-TA--ATTTGC--GAAA--------C-TTTCGCGTAATA--A----CGCGAAA--
gi|9 : GTGTT-TAT---ACGCG-AACGTTTCGCGT-TA--ATCCAC--GAAA--------T-TTTCGCGT--TT--ATT--CGCAAAA--GTTAC-GCG--T-T-AATTTGCG-AA-----AC------------------------TTTC-----GCGTAAT---A----------------AC-GCG-----AAA-----AA-------TAATTTTT-TTTGT---CTA-CGAAAATGA------GTTC-AATGGGCTTTCaataattttttttgtctacgaaaatgagttcaatgggctttc
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): TGATTCGTGTAAATTTTGCGTTAATATTCGCGGATTTCTTAAATGTATTTAGTTTTTTCGTTATAACACGAAAAAATGTTTCATAGTTTTTTTTTCAGCTTACAAAAATTATCATTGTGTTCAATGGGCTTTCGC
Unaligned ( gi|21 ): TCATATGCGAAAGATTTGTGTCATTATGCAAAAATATCGCTTAATTACGCTACATTTTTTTTTCATACAAAAATGAACTTAGAACATACATA
Unaligned ( gi|27 ): AACTGAGAATAGACTGAAGTTGAAATTTTGAATCTTAACTACTGACCTTTCAACTACA
Alignments
lowQualScore : 111111111111111111111111111111111111111111
lowQualScore : 2222 1 111111 111 2222222222 1 000000000000000000000000000000000000000000 333 1 11 111 111 11111 7777777777777777777777777777777777777777777777777777777777 22222222 1111 44444444444 111 2222222222 222 111 11 22222 1 1 1111 111111 22222 11 2222222222222 22222222222 222222 111 33333333333 1111 6666666666666666666666666 111111 44444444444444444444 222222 11111111111111 22222 111111
lowQualScore : 8 8 0 88 5 5 5 5 4444 1 666666 5 5 5 5 5 4 3 777 222 4 0000000000 0 222222222222222222222222222222222222222222 888 5 0 99 777 333 6 4 4 8 111 66 4 4 22222 2 0 0000000000000000000000000000000000000000000000000000000000 8 1 88 555 99999999 7777 888888 3 6 3 3 3 3 3 4 88888888888 2 77 222 5 77 0 5555555555 3 99 8 000 6 111 55 77777 6 6 3 5 6 1 1111 5 5 000000 22222 4 3 6666 3 3 77 4 99 4 4 3 9999 4 4 4 66 00 4444444444444 4 66 33333333333 5 5 3 444444 4 1 333 8 3 6666 99 66 2 99 2 33 2 99999999 2 77777777777 77 9999 0 66 999 4 4 8888888888888888888888888 4 6 000000 66666666666666666666 4 666666 88888888888888 6 3 22222 3 333333 3
lowQualScore : . . . .. . . . . .... . ...... . . . . . . . ... ... . .......... . .......................................... ... . . .. ... ... . . . . ... .. . . ..... . . .......................................................... . . .. ... ........ .... ...... . . . . . . . . ........... . .. ... . .. . .......... . .. . ... . ... .. ..... . . . . . . .... . . ...... ..... . . .... . . .. . .. . . . .... . . . .. .. ............. . .. ........... . . . ...... . . ... . . .... .. .. . .. . .. . ........ . ........... .. .... . .. ... . . ......................... . . ...... .................... . ...... .............. . . ..... . ...... .
lowQualScore : 0 0 8 22 7 7 7 7 3333 4 444444 0 0 0 0 0 4 9 111 444 4 8888888888 0 999999999999999999999999999999999999999999 999 0 0 00 000 999 7 4 4 9 777 11 4 4 99999 5 8 1111111111111111111111111111111111111111111111111111111111 0 4 66 888 44444444 6666 000000 8 7 3 3 3 2 3 0 55555555555 5 99 666 0 99 1 1111111111 8 44 0 000 4 888 88 88888 7 7 3 5 7 0 6666 7 7 111111 99999 0 6 6666 6 6 44 0 55 0 0 9 4444 4 4 4 11 66 4444444444444 4 11 44444444444 0 0 4 111111 4 0 111 0 3 5555 22 11 9 66 0 77 3 77777777 7 66666666666 99 8888 1 11 999 4 4 2222222222222222222222222 0 4 777777 44444444444444444444 0 888888 22222222222222 0 1 77777 1 111111 1
consensus : NNNNNNNNNNNNNNNNNNNNNNNNTTCCAAAGTCAATAGGCCTAAATGTTT-TG-TTATACCTCCACATTA-TG-TGGATATAAAT-G-ATACAAAAACAACAA----TTTTGAACTTTCTTCA-TAGT------AATGCATGT-A-TA-AT-CAATT-GTAATA-AAAAACAA--NT--ACAGG-AATATCT------G--TTTTTTTT-ATGTTT------------A-------------AATTTCG---CT-GC-AGCCATAAT-TCA-A-TCAATTGTTCCTTCACTAT---ATTGACG---AGTCATA-CCAATTCA-CGGATAGTTAC-GAG--TTAC--T-CCGAATA-C---C-ACGAAT---TA--------------------TAT--CAT-GA--------TAGT----GA----CATC-ACA--CTG---GTCCATAT---TGAAAACAC---GA---T--GTTGGACCGGGCGG-TCCAAC-A-TC-GAGTTTTCAAT-GGACCGGCA-G--C--GAGG--CCGAACATCGGGATT-GTTGGT--C-TTTTTCT--TGTGTTGAAT--TAGTGATATAGAGAA-AACATATAGG-GATNTAATAACAAGATA--TGACGTCGTGTTTTTA--TCTTGGCGTGA-CGTA-TAGGATATAAC-ATAAGTCCGNA--GCATGCGCC-ACAAA-CCTAGGA-C-AAACCTA-ATGTGGGACAAACCTA-GTTT-ATGATAGAACACTACAA-GA-TTGTCGATATCCA-TTAAAACAT-GTCT--GT-AATCTA-CAACGTCT----AGACG-G-AGTTT-G--ACATGTCATT--AC-------------TGAAC-ATTGC--AA--TACAAATCGTG-TT-TATACGCG--AA--GTTT-CGCGTTNATC--CGCGAAAGTTT-CGCGTT-TAT---TCGCGGAAAGTTNCGCGT-TA--ATNCGC--GAAA--------T-TTTCGCGT--TA--A----CGCGAAA--GTT-C-GCG--T-T-A-TTCGCG-AA--GTTACGC-----TATTCG----GCG-AAGTTTC-----GCGTAAT--TA----------------AC-GC------AAA-----AT-------TAATTTTT-TCT-----CTA-CGAAAATGA------GCTC-AATGGGCTTTC
Reference ( family-5944 ) : NNNNNNNNNNNNNNNNNNNNNNNNTTCCAAAGTCAATAGGCCTAAATGTTT-TG-TTATACCTCCACATTA-TG-TGGATATAAAT-G-ATACAAAAACAACAA----TTTTGAACTTTCTTCA-TAGT------AATGCATGT-A-TA-AT-CAATT-GTAATA-AAAAACAA--NT--ACAGG-AATATCT------G--TTTTTTTT-ATGTTT------------A-------------AATTTCG---CT-GC-AGCCATAA-TTCA-A-TCAATTGTTCCTTCACTAT---ATTGACG---AGTCATA-CCAATTCA-CGGATAGTTAC-GAG--TTAC--T-CCGAATA-C---C-ACGAAT---TA--------------------TAT--CAT-GA--------TAGT----GA----CATC-ACA--CTG---GTCCATAT---TGAAAACAC---GA---T--GTTGGACCGGGCGG-TCCAAC-A-TC-GAGTTTTCAAT-GGACCGGCA-G--C--GAGG--CCGAACATCGGGATT-GTTGGT--C-TTTTTCT--TGTGTTGAAT--TAGTGATATAGAGAA-AACATATAGG-GATNTAATAACAAGATA--TGACGTCGTGTTTTTA--TCTTGGCGTGA-CGTA-TAGGATATAAC-ATAAGTCCGNA--GCATGCGCC-ACAAA-CCTAGGA-C-AAACCTA-ATGTGGGACAAACCTA-GTTT-ATGATAGAACACTACAA-GA-TTGTCGATATCCA-TTAAAACAT-GTCT--GT-AATCTA-CAACGTCT----AGACG-G-AGTTT-G--ACATGTCATT--AC-------------TGAAC-ATTGC--AA--TACAAATCGTG-TT-TATACGCG--AA--GTTT-CGCGTTNATC--CGCGAAAGTTT-CGCGTT-TAT---TCGCGGAAAGTTNCGCGT-TA--ATNCGC--GAAA--------T-TTTCGCGT--TA--A----CGCGAAA--GTT-C-GCG--T-T-A-TTCGCG-AA--GTTACGC-----TATTCG----GCG-AAGTTTC-----GCGTAAT--TA----------------AC-GC------AAA-----AT-------TAATTTTT-TCT-----CTA-CGAAAATGA------GCTC-AATGGGCTTTC
gi|1 : TTTCAAAGTCAATAGGTCTAAATGTTT-TG-TTATACCG------TA-TG-TGGATATAAAT-GGATACAAAAACAACAA----TTTTGAACTTTCTTCAGTTGT------AATGCATGTCA-TA-AT-CAATT-GTAATT-AAAAACCA--TT--ACAGG-AAAATCT------G--TTTTGT---ATGTTT------------AG------------AAATTCA---CT-GC-AGC-ATAA---CA-A-TCAATTGTTCCTTCAC-AT---AT-GACG---AGCCATA-TCAA---A-CGGATAGTTAA-GAG--TTAG--T-CCGAATA-C---C-ACGAAT---TA--------------------TAT--CAT-GA--------TAAT----AA----CATC-ACA--CTG---GTCCATAT---TGAAAACACA--GAATGC--GTTGG-CCGGACGG-TCCAAC-A-TC-GAGTTTTCAATGGGACCGGCA-G--C--GAGG--CGGAAC-TCGGGATT--TT-GT--C-TTTTTCT--TGTGTTGAAT--TAGTGAT-TAGAGAT-AACATATA-G-GATG-AATAACAA-ATAATTG--GTCCTGTTTT----TCTT-GCGTGACCGTA-TAGGA-ATAAC-ATAAGTCCAAG--GCATGTG-C-ACAAA--CTAGGA-C-AAACTTA-ATGTGGGACAACCGGA-GTTTAATGATAGAA-AC-ACAA-GAGTTGTCGATATCCATTTAAAACAT-GTCT--GTGAATCTA-C-ACG-CTCGCAAGACG-GAAGTTT-GTAACATGTCATC--ACGTTCGACACGAAACGAGC-ATTGC--AA--TACAAATCGTGATT-TATACGCG--AC--GTTT-CGCGTTTACCTTCGCGAAAGTTT-CGCGTT-TAA---TTGCAGCAAGTTACGCGT-TA--ATTCGC--GAAG--------T-TTCCGCGT--T--------CGCGAAA--GTT-C-GCG--T-A-A-TTCGCG-AA--GTTACGC-----TATTCG----GCA-AAGTTAC-----GCGAAAT--TA----------------AC-GC------AAA-----AT-------TAATTTTT-CCT-----CTA-CGAAAATGAAG----ACTC-AATGGGCTTTC
gi|10 : ggcagattctagcttgttttttctGCGTGA-CGTA-TAGGATATAAC-ATAAGTCCAAA--A-ATGTGCC-ACAAA-CCTA---------------TGTGGAACAAACATT-GTTT-ATGATAGAACACTACAA-GA-TTGTCGATATCCA-TTATAACAT-GTCT--GT-AATCTA-TAACGTCT----AGACG-G-AGTTT-G--ACATGTCATT--AC-------------TGAAC-ATTGC--AA--TACAAATCGTG-TT-TATACGCGA-AA--GTTA-CGCGTTTATT--CGCAAAAG-TT-CGCGT
gi|10 : T-C-GTG--T-TTA-TACGCG-AAA-GTTACGCGTT--TATTCG-----CA-AAAGTTC-----GCGTAAT---A----------------AC-GC------AAA-----TT-------TT-TTTTT-TCT-----CTA-CGAAAATGA------GCTC-AATGGGCTTTCaataacgcaaattttttttttctctacgaaaatgagctcaatgggctttcg
gi|11 : gcgtgacgtataggatataacataagtccaaaaatgtgccacaaacctatgtggaacaaacattgtttatgatagaacactacaagattgtcgatatccattataacatgtctgtaatctataacgtctagacggagtttgacatgtcattactgaacattgcaatacaaaAACCTA-GTTT-ATGATAGAACACTACAA-GA-TTGTCGATATCCA-TTAAAACAT-GTCT--GT-AATCTA-CAATGTCT----AGACG-G-AGTTT-G--ACATGTCATT--AC-------------TGAAC-ATTGCAAAA--TATAAATg
gi|12 : TTCCAAAGTCAATAGGCCTAAACTTTT-TG-T-ATACCTCCACATTA-TG-TGGATATAAAT-G-ATACAAAAACAACAA----TTTTGAACTTTCTTCA-TAGT------ATTGCATGT-A-TT-AT-CAATT-GTAATG-AAAAACAA--TT--ACAGG-GTTAT-T------AATTTTTTTTT-AC-TTT------------AATCAC--------AATTTCAC--CT-GC-AGCCATAA----ACA-TCAATTGTTCCTTCACTAT---nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntaacgcga
gi|13 : agaTTGCG-TG-TAAACGCTT-AA--TTTT-CGCGATACAA--CACGAAAATAA-CGAGTC-TAT---TCGTGTAAA-TTTTGCGT-TAATATTCGC--GGA-----------TTTC---T--TA--A----tg
gi|13 : TTGCGTGT-AA--A--CGC--TTAA--------T-TTTCGCGA--TACAA----CACGAAA--ATAAC-GAG--TCT-A-TTCGTGTAA--ATTTTGCGTTAATATTCG-----CG-GA-TTTCTTAAAATGTATT--TAGTTTTTTCGTTATAACAC-GA------AAA-----ATGTTTCAATAGTTTTT-TTTTTCAGCTA-CAAAAATTATCATGTGTTC-AATGGGCTTTaatgtatttagttttttcgttataacacgaaaaatgtttcaatagttttttttttcagctacaaaaattatcatgtgttcaatgggcttt
gi|14 : TTTTGCGT-GA--GAACGC--GGAA--------T-TTTCG------A--A----CGCGAAA--GT--C-GGGGTT-T-A-TTCGCG-AAA-GCTTCGCATT--TATTCG-----CGTAAGTTTC-----GCGTTATA-TA----------------AC-GC------GAACAATGAT-------TA-TTTTT-TAG-----CTA-TGAAAAGTC------GCTC-AATG
gi|15 : attaaaactgtttataaaacaagtaAAAATT--GCATCTA--CTAGGT--GAAA--------T-TT-CGCGTCATA--A----CGCGAAGCCGTA-A-GCG--T-TTA-TTTGCG-AG--CGTACG-------AT---------G-ATATAT--------GTAAC--------------------AC-GA------AAA-----AT---------ATTGTTATAG-----CTAGCGAAAATTA------GCTCAAATGGGCTTTCatgattt
gi|17 : aaaaG---GTCCAC-----TGGAAACAT---GA---T--TATGGACCGGGTGG-TCCAAC-A-TC-GACTTTTTAAT-TTACCTGCA-G--T--------CCGAACATGGGGATT-GTTGGA--C-TTTTTat
gi|18 : aatcTG---GTC---AT---TAAAACCTT---GA---TT-GTTGGACCGCCCAG-TCCAAC-A-T--GAA--TTCAAT-GGATCGggttattccattatgtag
gi|18 : caaA---T--GTTGGACTGGGCGG-TCCAACAA-TC-AAGGTTTTAAT--GACC-ACA-G--T--------CCCAACATCGGGATT-GCTGGA--CGCTTTTCT--TGTATCTAAT--TAcagtcccaacatcgggattgctggacgcttttcttgtatctaattata
gi|19 : caacgatccattgaattcA--CCG---GTCCAT-----TGAAAA--------------GTTGGACCGGGCGG-TCTAAC-ACTC-GGGGTCT-AA---------CA-T--T--GAGATTTCAAACATCGGGA----TTGGA--C-TTTTTCT--TGCAT----T--CAGTGATATAGta
gi|2 : aaTGTTTCTGATTATACCTC-ACATTAATGGTGGAAATAAATTG-ATACAGAAACAACAAATAATTTTGAACTTTCTTCAATAGTCAACGTAATGCA----A-TA-AT-CAATT-GTAATATAAAAAAAA--AT---CAGGGAATATCT------G--TTTTTTTTTGTGTTT------------ACTTCTCAATCACCAATTTCGACGCT-GCGAGCCATAA---CA-AATCAATTGT--CTTCCCCATCCTATTGACGTT-A-TCACATCCAATTCA-CGGATAGTTATAGAGGTTTACACT-CTGAATA-CAGCT-ACGAGT---TAAAT-----------------TATTACAC-GAGATTTAATTAGTTCATGAAATGCATCCATA--CTG---GTCAA-AT---TGAAAACACTGGAA---T--GTTGAAC-GGGCGGGTCCAAC-A-TC-GTGTTTTCAAT-G--CCGGCATGTCC--GTGG--GCGAACATGAGGATTTATTGGTA-T-TTTTTCT--TGTGGTGAATA-TA-TGA---AGAGAA-GATATATAGGCGATTTAATGACAAGAT---TGA--TCGTGTTTTTA--TCTTGGCATGA-CGTA-TAGGA---AACCATAAGTCCGCATAGCATGCACC-ATAAAACCTAGGA-CCAAACC---GTACAGGGCAAACCTA-CTTT--TG---------------GA-TTGTCGATATCAA---AAAACAT-GTCCTGGT-AATCTAGCAAC-TCT----AGACG-G-AGTTTAG--AGATGTCATGA-AC-------------TGAAC-ATTGC--A-----------GTG-TTATATACGCG--GAACGTTT-CGCGTTAATCCACACGAAATTTT-CGCCGT-TAT---TCGCAAAAAGTTAGCCGT-TAG-ATGTGC--GAAA--------C-TTT-GCGTAATA--ACAACCGCGAGA--
gi|2 : GTGTTATAT---ACGCGGAACGTTTCGCGT-TA--ATCCACACGAAA--------T-TTTCGC-----------------------------CG--T-T-A-TTCGCA-AAAAGTTA-GC-----CGTTAGATGTGCG-AAACTTT-----GCGTAATAACA----------------ACCGCGAG---AAA-----AA-------TAATTTTT-TTTGTT--CTA-CGAAAATGA------G-TT-AA-GGGCTTTaaaataattttttttgttctacgaaaatgagttaagggcttttcgt
gi|20 : tgtttctgattatacctcacattaatggtggaaataaattgatacagaaacaacaaataattttgaactttcttcaatagtcaacgtaatgcaataatcaattgtaatataaaaaaaaatcagggaatatctgtttttttttgtgtttacttctcaatcaccaatttcgacgctgcgagccataacaaatcaattgtcttccccatcctattgacgttatcacatccaattcacggatagttatagaggtttacactctgaatacagctacgagttaaattattacacgagatttaattagttcatgaaatgcatccatactggtcaaattgaaaacactggaatgttgaacgggcgggtccaacatcgtgttttcaatgccggcatgtccgtgggcgaacatgaggatttattggtattttttcttgtggtgaatatatgaagagaagatatataggcgatttaatgacaagattgatcgtgtttttatcttggcatgacgtataggaaaccataagtccgcatagcatgcaccataaaacctaggaccaaaccgtacagggcaaacctacttttggattgtcgatatcaaaaaacatgtcctggtaatctagcaactctagacggagtttagagatgtcatgaactgaacattgca--AA--TTTT-CGCGTTTATT--TGCGAAAGTTT-TGCGTT-TAA---TCGCGG-AAGTCACGCGT-AT--ATTTGC--AAGA--------A-TTACGCGTA-TAT-C----CTCGAAA--GTT-tcgt
gi|22 : tttattctccta--GGAA--------TGTTTCGCGT--TATAA----CGCGAAA--GTT------------A-TACGCG------TT---------TATTCA----TGA-AAGGTTC-----GCGCAAT--TA----------------AC-GC------AAA-----Atc
gi|23 : acataattatattttaaatTC-AAA--C-A---GTCCAT-----TGAAAACAT---GA---T--GTTGGACCAGGCGG-TCCAAC-A-TC-AAGTTCTCAAT-GGACTGGCA-G--T--------CCAAACATCTGGATT-GTTG
gi|24 : g----CGTC-AAA--CTG---GTCCATG-----GAAAACA---------T--GTTGGACCAGGCAG-TCCAAC-A-TT-GAGTTTTCAAT-GGACCAGCA-G--T--------CCGAACATCAGGATT-GTTG
gi|25 : GCGAAAGATT-CGCATT-AATTGATCGT-GAAAGTCTTGCGT-TA--CAACGC--G--A--------T-TTT
gi|26 : CGT-----TATTAC----GCG-AAACTTT------CGTAAT---A----------------AC-GCGGA---AAA-----AA-------AAAATTTT-AC------CTA-CGAAAATGA------TCTC-AATGGGCTTTtttcaactactaaaattagctaaataggttt
gi|28 : ttcgAT---ATTGACG---AGTCATA-CCAATTCA-CGGATAGTTAC-GG----TAT--T-CCAAATA-C---C-ta
gi|29 : gctataATGC-A-TA-AT-CAATT-GTAATA-AAAAACAA--AT--ACAGG-AATATCT------G--TTTTta
gi|3 : tCATTA-TG-TGGAACTAAAT-G-ATACAAAA-CAACAAATCATTTTGAACTTTCTTCA-TAGT------CACGTATGC-AATACATACAATTTGTAATA-AAAAA-AA--AT---CAGG-AATATCT------G--TTTTTTTT-GTGTTTCTTGTTAATCACAC------------AATTTCGACGCT-GCTAGCCATAC-ACAA-A-TCAATTGTTTCT-CA-TCT---ATTGACGTTCA-TCAT--CCAATTCAACGGATAGTTATAGAGG-TTCC--TACTGAATA-CG--C-ACGAGT---TAATTATTACAGAGATTTAATTTAT--CAT-GA--------AATG----GG----CATCCATAA-CTG---GTCAA-AT---TGAAAACACTG-GA---TATGTTG-ACCGGGCGGGTCCAAC-A-TC-GTGTTTTCAAT-GGCACGGCT-G--CCGGAG----CGAACATGAGGATT-ATTGGTAAT-TGTTTCTTGTGTGTTGAATACTA-TGA-GTAG-GAA-GAGATATAGG-GATTT-ATGACAAGATA--TGA---CGTGTTTTTAAGTCTTGGCATGA--GTATTAGGG-AAACC-ATAAGTCCGCA--TGATGCACCAATAAA-CCTAGGACC-AAACCGACA---GGGACAAACCTATCTTT-AT----------------GA-TTGTCGATATCCA-AAAAAACATGGTCTG-GT-AATCTA-CAAC-TCT----AGACGAG-AGTTT-G--AGATGTCATTGAAC-------------TGAACGATTG---A-----------GTG-TT-TA-ACGCG--GAACGTTT-CGCGTTAATC--CACGAAATTTT-CGCG-T-TAT---TCGCAAAAAGTTAAGCGT-TAG-ATGTGC--G-AA--------C-TTTAGCGTAATA--ACAC-CGCGAGA--
gi|3 : GTGTT-TAA----CGCGGAACGTTTCGCGT-TA--ATCCAC--GAAA--------T-TTTCGCGT--TA--TT---CGCAAAAA-GTT-AAGCG--T-T-A------G-AT--GT--------------------GCG-AACTTTA-----GCGTAAT---A----------------AC-ACCGCGAGAAA-----AC-------TAATTTTT-TTTGTT--CTA-CGAAAATGA------GTTC-AATGGGCTTTaaactaattttttttgttctacgaaaatgagttcaatgggcttt
gi|30 : cattatgtggaactaaatgatacaaaacaacaaatcattttgaactttcttcatagtcacgtatgcaatacatacaatttgtaataaaaaaaaatcaggaatatctgttttttttgtgtttcttgttaatcacacaatttcgacgctgctagccatacacaaatcaattgtttctcatctattgacgttcatcatccaattcaacggatagttatagaggttcctactgaatacgcacgagttaattattacagagatttaatttatcatgaaatgggcatccataactggtcaaattgaaaacactggatatgttgaccgggcgggtccaacatcgtgttttcaatggcacggctgccggagcgaacatgaggattattggtaattgtttcttgtgtgttgaatactatgagtaggaagagatatagggatttatgacaagatatgacgtgtttttaagtcttggcatgagtattagggaaaccataagtccgcatgatgcaccaataaacctaggaccaaaccgacagggacaaacctatctttatgattgtcgatatccaaaaaaacatggtctggtaatctacaactctagacgagagtttgagatgtcattgaactgaacgattga------AAA-----ATA------TATTTTTC-TCT-----CTA-CGAAAATGA------GCTC-AATGGGCTTTC
gi|31 : A---T--GTTGGACCGCCCAG-TCCAAC-A-T--GAA--TTCAAT-GGATCGg
gi|32 : gtcaaTTTTT-TCT-----CTA-CGAAAATGA------GCTC-AATGGGCTTTC
gi|33 : tatattTTTTT-TCT-----CTA-CGAAAATGA------GCTC-AATGGACTTTCg
gi|34 : attt-------TATTTTTT-TCT-----CTA-CTAAAATGA------GCTC-AATGGGCTTTCg
gi|4 : aATTA-TG-TGGATATAAAT-G-ATACAAAAACAACAA----TTTTGAACTTTCTTCA-TAGT------ATTGCATGT-A-TA-AT-CAATT-GTAATA-AAAAACAA--CTA-ACAGG-AATATCTGGGGGGG--TTTTTTTTAATGTTT------------T-------------ACTTT-----------AATCACAATTTCA-A-TCAATTGTTCCTTCAC--T---ATTGACG---AGTCATA-CCAATTCA-CGGATAGTAAC-GAG--ATAC--T-CCGAATACC---C-ACTAAT---T---------------------------AT-GA--------TAG-----AA----CACG-GCA---TGATTGTCGATATCCATTAAAACAg
gi|4 : agagttgacattatatcagattagcacgttcgttacgcgggaagattagaacacgaatattgaatctttcgtgcattcgattaagcgacatggggtacacaattgcaagtgttaaataaaatatgaaattgtcaaaacgagtcgaacattggcctagtgtctcgcaagtgtactcctcattttagcaggccgaaggcattccaacattttggttcgaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTT-ATGATAGAACACGGCAT-GA-TTGTCGATATCCA-TTAAAACAT-ATCT--GT-AATCTA-TAACGTCT----AGACG-G-AGTTT-G--ACATGTCATT--AC-------------TGAAC-ATTGC--AAAATATAAA------------ACGCG--AAA-GTTT-CGCGTTTATT--CGCG-AAGTTTACGCGTT-tatctgtaatctataacgtctagacggagtttgacatgtcattactgaacattgcaaaatataaaacgcgaaagtttcgcgtttattcgcgaagtttacgcgttat
gi|5 : agagttgacattatatcagattagcacgttcgttacgcgggaagattagaacacgaatattgaatctttcgtgcattcgattaagcgacatggggtacacaattgcaagtgttaaataaaatatgaaattgtcaaaacgagtcgaacattggcctagtgtctcgcaagtgtactcctcattttagcaggccgaaggcattccaacattttggttcgaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnattatgtggatataaatgatacaaaaacaacaattttgaactttcttcatagtattgcatgtataatcaattgtaataaaaaacaactaacaggaatatctgggggggttttttttaatgttttactttaatcacaatttcaatcaattgttccttcactattgacgagtcataccaattcacggatagtaacgagatactccgaatacccactaaAGTCAATAGGCCTAAATGTTT-TG-TTATACCTCCACATTA-TG-TGGATATAAAT-G-ATACAGAAACAACAA----TTTTGAAC-TTCTTCA-TGGT------AATGCATGT-A-TA-AT-CAATT-GTAATA-AAAAAAAACTAT--ACAGG-AATTTCT------G-----TTTTT-ATGTTT------------T-------------ACTTT-----------AATCACAATTTCA-A-TC-ATTGTTCC-TCAC--T---ATTGATG---AGTCATA-CCAATTCA-CGGATAGCTAC-AAG--TTAC--T-ACAAATA-C---C-A--ACC---TA--------------------GTT--TAT-GA--------TAG-----AA----CACT-ACAAGATT---GTCGATATCCATTAAAACAT---Gat
gi|5 : agaattgacattatatcagattagcacgttagttacacgggtagattagagaatgaatattgaatctttcatgcattcgattaagcgacacgaggtacacgattgcaagtgttgtaaatacatgtaaaaatgtgaaattgtcgaaacgagtcgaacattggcgtagtgtctcgcaagtgtactcctcattttagcaggtcgaaggcattccaacatttggttcgagggtctatcatagcccatgttgccgagacttcACCAACCTA-GTTT-ATGATAGAACACTACAA-GA-TTGTCGATATCCA-TTAAAACAT-GTCT--GT-AATCTA-CAATGTCT----AGACG-G-AGTTT-G--ACATGTCATT--AC-------------TGAAC-ATTGC--AA--tctgtaatctacaatgtctagacggagtttgacatgtcattactgaacattgcaaaat
gi|6 : agaattgacattatatcagattagcacgttagttacacgggtagattagagaatgaatattgaatctttcatgcattcgattaagcgacacgaggtacacgattgcaagtgttgtaaatacatgtaaaaatgtgaaattgtcgaaacgagtcgaacattggcgtagtgtctcgcaagtgtactcctcattttagcaggtcgaaggcattccaacatttggttcgagggtctatcatagcccatgttgccgagacttcagtcaataggcctaaatgttttgttatacctccacattatgtggatataaatgatacagaaacaacaattttgaacttcttcatggtaatgcatgtataatcaattgtaataaaaaaaaactatacaggaatttctgtttttatgttttactttaatcacaatttcaatcattgttcctcactattgatgagtcataccaattcacggatagctacaagttactacaaatT---ATTGACG---AGTCATA-CCAATTCA-CGGATAGTTAC-GG----TAT--T-CCAAATA-C---CTACGAAT---AA---------------------AT--CATTGA---------AAT----GA----CATC-ATA--CTG---GTC---AT---TGAAA-CAC---GA---T--GTTG-ACTGGGCGG-TCCAAC-A-TCAGAGTTTTCAAT-GGACCGGCA-GTCC--AAGG--C-GAACATCGGGATT-ATCGGT--C-TTTATCT--TGTGTTAAAT--TA----TATAGGAAT-AACATATAGG-GATATAAAAAAAAAATA--TGACGTCGTGTTT--A--TCTTG-CGTGA-CGCAATAG-ATATAAC-ATAAGTCAGCA--GCATGTGCC-ACAAA-CCTA------AAATCTT-ATGTGGGACAAACCTA-GTTT-ATGATAGAAC--TACAAAGA-TTGTCGATATCCA-TTAAAACAT-GTCT--GT-AATCTA-CAACTTCT----AGACG-G-AGTTT-G--ACATGTCATT--AC-------------TGAAC-ATTGC--AA--TACAAATCGTG-TT-TATACGCGCAAA--GTTTACGCGTTAATA--CGCAAAAGTTTACGCGTT-AAT---TCGC-GAAAGTTT-GCG--TA--ATA-AC--GAAAATATTTTTT-TTTC---T--TA--A----CGaat
gi|7 : AGTCAATAGGCTTAAATGTTT-TG-TTATACCTTCACATTA-TG-TGGATATAAAT-G-ATACAAAAACAACAA----TTTTGAACTTTCTCCA-TGGT------AATGCATGT-A-TA-AT-CAATT-GTAATA-AAAA--AA--CTACACAGG-AATATCT------G----TAATTT-ATGTTT------------T-------------ACTTT-G---AT-------CACAATTTCA-A-TCAATTGTTCCTTCGC--T---ATTGATG---AGTCATA-CCAATTCA-GGAATAGTTAC-AAG--TTAC--T-CCGAATA-C---C-A--ACC---TA--------------------GTT--TAT-GA--------TAG-----AA----CACT-ACA--aaaatgagctcaatgggctttcg
gi|7 : atgaatattgaatctttcgtgcattcgatttaaaagcgacacagggtacacgattgctagtgttgtaaataaaatgtgaaattatcgagacgagtcgaacattggcctagtgtctcgcaagtgtactcctcattttagcaggtcgaaggcattccaacattttggttcgaggttctatcatagcgcatgttgcccgagacttcACCAACCTA-GTTT-ATGATAGAACACTACAA-GG-TTGTCGaggttgtcg
gi|8 : atgaatattgaatctttcgtgcattcgatttaaaagcgacacagggtacacgattgctagtgttgtaaataaaatgtgaaattatcgagacgagtcgaacattggcctagtgtctcgcaagtgtactcctcattttagcaggtcgaaggcattccaacattttggttcgaggttctatcatagcgcatgttgcccgagacttcagtcaataggcttaaatgttttgttataccttcacattatgtggatataaatgatacaaaaacaacaattttgaactttctccatggtaatgcatgtataatcaattgtaataaaaaaactacacaggaatatctgtaatttatgttttactttgatcacaatttcaatcaattgttccttcgctattgatgagtcataccaattcaggaatagttacaagttactccgaat-AAAAACAA--TT--ACAGG-ATTATCT----------TTTTTTT-ACTTTT------------ATCAC---------AATTTCA---CCAGC-AGCCATAA-A-CA-ACTCGATTGTTCCTTCACTAT-----TGATG---A-------CCAATTCC-AGGATAGTTAC-GAG--TTAT--T-CCGAATA-C---CCACGAATAGACA--------------------T-T--CAT-GA---------AAT----GA----CATC-ATA--CTG---GTCCAT-----TGAAAACAC---GA---T--GTTG-ACTGGGCGT-TCCAAC-A-TC-GAGTTTTCAAT-GGACCGGCA-GTCC--AAGG--C-GAACATCGGGATT-ATTGGT--C-TTTATCT--TGTGTTGAA-----GT-ATATAGAGAATAACATACAGG-GAT---ATAACAAAATA--TGACGTCGTGTTT--A--TCTTG-CGTGA-CGTA-TAGGATATAGC-ATAAGTCCAAA---CATGTGCT-ACAGA-CCTAAGA-C-AAATCTA--TGTGGGACAAACCTA-GTTT-ATGATAGAACACTACAA-G----------------TTAAAATAT-GTCT--GT-GATCTA-
gi|9 : --GCATGCACC-ATAAA-CCTAGGA-C-AAACCTA--CATGGGACAAACCTA-CTTT-ATGAT-----------------TGTCGATATCCA---AAAACAT-GTCT--GT-AATCTA-CAACGTCT----AGACG-G-AGTTT-G--AGATGTCATT--AC-------------TGAAC-ATTGC--AA----------GTG-TT-TATACGCG--AAC-GTTT-CGCGTTAATC--CACGAAATTTT-CGCGTT-TAT---TCGC-AAAAGTTACGCGT-TA--ATTTGC--GAAA--------C-TTTCGCGTAATA--A----CGCGAAA--
gi|9 : GTGTT-TAT---ACGCG-AACGTTTCGCGT-TA--ATCCAC--GAAA--------T-TTTCGCGT--TT--ATT--CGCAAAA--GTTAC-GCG--T-T-AATTTGCG-AA-----AC------------------------TTTC-----GCGTAAT---A----------------AC-GCG-----AAA-----AA-------TAATTTTT-TTTGT---CTA-CGAAAATGA------GTTC-AATGGGCTTTCaataattttttttgtctacgaaaatgagttcaatgggctttc
blockSeqs : C A CC A G T . ATAA A CAACGT . A C A T T C CTA ACA G GGGGGGGT T ACTTCTCAATCACCAATTTCGACGCTGCG TTT C A TA CCT TTC G T A A GGT AC A C AGCT C TAAATTATTACACGAGATTTAATTAGTTCATGAAATG C T AG ATT GATATCCA CTGG TAT G G A C A T . T TGAGATT C TA TAA G TG CAGTGATA A AT C TTA G A AC TTAAG G . T T C A TAGC A A GGACC GACA T . CACT A . T G TG . G G . A . A . GA . G AA ATACAAATC . A T GAAC A T CCA A A TGAT GT TT C AT T AC G ATATTTTT G AATAACAAC CC AAC GT TT A T AAGTTAGCCGTTAGATGTG T A CTTAAA TAGTTTTTTCGTTATAAC C CGCGAG ATGTTTCAA G A TTCAG G TCATGT A
blockSeqs : . . CC . . . . ATCA . . . . . . . . A T AA . AATT A CTTGTTAATCACACAATTTCGACGCTGCT TTT . C CA . TT G . . A GG . . . GC C TAATTATTACAGAGATTTAATTTATCATGAAATGGG C A A . GATATCCA CTG TT G G . . . G . . TCCGTGG C G TA . . ACTATGAG G A . ATA G A AC TTA G . A T . C TG . . GGACC TTAT . . CACT . . T . G . . G . . . . . A . . . AAATATAAA . . A GAAC . A T A . T AA GC . G A . T . . AATAACAC A TAA . CT . . ATTTTGCGTTAATATTCG . G C AACA . GAG CAATGAT A . GTT . . .
blockSeqs : . . TC . . . . . . . . . . . . . C A A . GT . AATCACAATTTCACCTGC TTT . . TC . . G . . . G . . . CT C AGACATTCATGAAATGA . A . . AAAT T T G . . . . G . . TCCAAGG C G A . . ATATGA A A . TT A A A A G . . T . C GC . . AGAC TAT . . CACG . . A . . . . G . . . . . . . . . ATACAAATC . . T CAAA . A A . . T GG TT . G A . G . . TACAA . TAC . TT . . AGTTACGCGTTTATTCG . A C ATA . GGA ATA A . GTT . . .
blockSeqs : . . C . . . . . . . . . . . . . C A A . GT . ATCACAATTTCACCAGC AC . . TA . . G . . . G . . . CC C TAGTTTATGATAGAA . T . . CATG T T G . . . . T . . TCCAAGG C G A . . GTATA . T . . A . A A . . . . . C GC . . GGAC TAC . . CACT . . T . . . . G . . . . . . . . . A . . T AAA . T T . . A GG AG . . G . A . . CATAA . TC . T . . AGCTTCGCATTTATTCG . A T TA . G TT A . GT . . .
blockSeqs : . . . . . . . . . . . . . A A A . GT . TACTTTGAT A . . . . . G . . . G . . . C C AAATCATTGAAATGA . C . . AAAT T T A . . . . T . . CCGGAG C G A . . TATA . . . . . A A . . . GT . . CACT . . T . . . . T . . . . . . . . . . . . T TAA . A C . . T AA TC . . C . A . . ATATC . AA . T . . TTTATTCAT . G C A . . AT A . . . . .
blockSeqs : . . . . . . . . . . . . . C C A . G . TACTTT . . . . . . . . . . G . . . C . TAGTTTATGATAGAA . C . . CAC T T G . . . . T . . T C A T . . C . . . T . . CACT . . T . . . . G . . . . . . . . . . . . . AAA . T T . . T GG AC . . T . A . . TATAA . C . T . . CGTACGAT . A T A . . AA T . . . . .
blockSeqs : . . . . . . . C . . G . TACTTT . . . . . . . . . . . . . . C . TATGATAGAA . T . . CAT C T G . . . . T . . T C A T . . . CT . . T . . . . . . . . . . . . . . . . . AAC . A A . . T G TT . . A . A . . AATAA . T . T . . GTG . C A A . . AA T . . . . .
blockSeqs : . . T . . . . . . . . . . . . . C . C . . CAT C T G . . . . T . . T . A . . . . . . . . . . . . . . . . . . . . AA . A C . . T G AA . . G . G . . TTATT . . . . . . AC . . C A . . AC A . . . . .
blockSeqs : . . T . . CAT . T . . . . . T . . T . . . . . . . . . . . . . . A A TC . . C . A . . TATT . . . . . . . AA . . . . . .
blockSeqs : . . AT . T . . . . . . . . . . . . . G AC . . A . A . . TAA . . . . . . . .
blockSeqs : . AT . . . . . . . . . TC . . T . A . . TAA . . . . . .
blockSeqs : T . . C . A . . AA . . . . .
blockSeqs : . . . . . . . . .
blockSeqs : . . . .
blockSeqCons : CC ATCACAATTTCACCGC************************** *** TA NAT***** T*** T***** TCCGGG***** G* ATATGA**** T** A** A* GGAC** CACT T* **** ** ************* AAA*** N** TATAA****** TAC* AGTTGCGTTTATTCG********** A******************* ******
originalCons : NNNNNNNNNNNNNNNNNNNNNNNNTTCCAAAGTCAATAGGCCTAAATGTTT-TG-TTATACCTCCACATTA-TG-TGGATATAAAT-G-ATACAAAAACAACAA----TTTTGAACTTTCTTCA-TAGT------AATGCATGT-A-TA-AT-CAATT-GTAATA-AAAAACAA--NT--ACAGG-AATATCT------G--TTTTTTTT-ATGTTT------------A-------------AATTTCG---CT-GC-AGCCATAAT-TCA-A-TCAATTGTTCCTTCACTAT---ATTGACG---AGTCATA-CCAATTCA-CGGATAGTTAC-GAG--TTAC--T-CCGAATA-C---C-ACGAAT---TA--------------------TAT--CAT-GA--------TAGT----GA----CATC-ACA--CTG---GTCCATAT---TGAAAACAC---GA---T--GTTGGACCGGGCGG-TCCAAC-A-TC-GAGTTTTCAAT-GGACCGGCA-G--C--GAGG--CCGAACATCGGGATT-GTTGGT--C-TTTTTCT--TGTGTTGAAT--TAGTGATATAGAGAA-AACATATAGG-GATNTAATAACAAGATA--TGACGTCGTGTTTTTA--TCTTGGCGTGA-CGTA-TAGGATATAAC-ATAAGTCCGNA--GCATGCGCC-ACAAA-CCTAGGA-C-AAACCTA-ATGTGGGACAAACCTA-GTTT-ATGATAGAACACTACAA-GA-TTGTCGATATCCA-TTAAAACAT-GTCT--GT-AATCTA-CAACGTCT----AGACG-G-AGTTT-G--ACATGTCATT--AC-------------TGAAC-ATTGC--AA--TACAAATCGTG-TT-TATACGCG--AA--GTTT-CGCGTTNATC--CGCGAAAGTTT-CGCGTT-TAT---TCGCGGAAAGTTNCGCGT-TA--ATNCGC--GAAA--------T-TTTCGCGT--TA--A----CGCGAAA--GTT-C-GCG--T-T-A-TTCGCG-AA--GTTACGC-----TATTCG----GCG-AAGTTTC-----GCGTAAT--TA----------------AC-GC------AAA-----AT-------TAATTTTT-TCT-----CTA-CGAAAATGA------GCTC-AATGGGCTTTC
finalCons : NNNNNNNNNNNNNNNNNNNNNNNNTTCCAAAGTCAATAGGCCTAAATGTTT-TG-TTATACCTCCACATTA-TG-TGGATATAAAT-G-ATACAAAAACAACAA----TTTTGAACTTTCTTCA-TAGT------AATGCATGT-A-TA-AT-CAATT-GTAATA-AAAAACAA--NT--ACAGG-AATATCT------G--TTTTTTTT-ATGTTTATCACAATTTCACCGC--------------------------AGCCATAA---CA-A-TCAATTGTTCCTTCACTAT---ATTGACG---AGTCATA-CCAATTCA-CGGATAGTTAC-GAG--TTAC--T-CCGAATA-C---C-ACGAAT---TA--------------------TAT--CAT-GA--------TAGT----GA----CATC-ACA--CTG---GTCNAT-----TGAAAACAT---GAT-----GTTGGACCGGGCGG-TCCAAC-A-TC-GAGTTTTCAAT-GGACCGGCA-GTCCGGG-----CCGAACATCGGGATTG-TTGGT--C-TTTTTCT--TGTGTTGAATATATGA----TAGAGAA-AACATATAGG-GATT--ATAACAAGATA--TGA-GTCGTGTTTTTA--TCTTGGCGTGA-CGTA-TAGGATATAAC-ATAAGTCCGNA--GCATGCGCC-ACAAA-CCTAGGAC--AAACCTA-ATGTGGGACAAACCTA-GTTT-ATGATAGAACACTACAA-GA-TTGTCGATATCCAT-TAAAACAT-GTCT--GT-AATCTA-CAACGTCT----AGACG-G-AGTTT-G--ACATGTCATT--AC-------------TGAAC-ATTGC--AA--TACAAATCGTG-TT-TATACGCGAAA---GTTT-CGCGTTNATN--CGCGAAAGTTT-CGCGTT-TAT---TCGCGGAAAGTTNCGCGT-TA--ATNCGC--GAAA--------T-TTTCGCGTTATAA------CGCGAAA--GTTAC-GCG--T-T-A-TTCGCG-AAAGTTGCGTTTATTCG----------CG-AAGTTTC-----GCGTAATA-------------------AC-GC------AAA-----AT-------TAATTTTT-TCT-----CTA-CGAAAATGA------GCTC-AATGGGCTTTC
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): TGATTCGTGTAAATTTTGCGTTAATATTCGCGGATTTCTTAAATGTATTTAGTTTTTTCGTTATAACACGAAAAAATGTTTCATAGTTTTTTTTTCAGCTTACAAAAATTATCATTGTGTTCAATGGGCTTTCGC
Unaligned ( gi|21 ): TCATATGCGAAAGATTTGTGTCATTATGCAAAAATATCGCTTAATTACGCTACATTTTTTTTTCATACAAAAATGAACTTAGAACATACATA
Unaligned ( gi|27 ): AACTGAGAATAGACTGAAGTTGAAATTTTGAATCTTAACTACTGACCTTTCAACTACA
Alignments
lowQualScore : 2222 1 111111 11111 111111111 11111111 1 44444444444444444 555555555555555555555 1 1 111 111 11111 7777777777777777777777777777777777777777777777777777777777 11111 11111111111 44444444 111 222 1111 11 33333 1111111 222 11111 1 1 1 111111 22222 11 2222222222222 222222222222 1 111111 44444444444444444444444444444444444 111111 2222222222222222222222222222 11111111111 222222 11111111111111111 22222 111111
lowQualScore : 8 8 0 88 5 5 5 5 4444 1 666666 5 5 5 5 5 4 3 1 88888 4 666666666 66 22222222 0 2 22222222222222222 5 66 777777777777777777777 5 3 1 8888 333 6 4 4 8 111 66 4 4 22222 2 0 0000000000000000000000000000000000000000000000000000000000 888888 3 33333 888 6 77777 2 66666666666 5 0 7 3 3 4 66 4 00000000 77 222 5 77 555 5 7777 3 99 99 55555 6 6666666 666 0 33333 0 6 3 5 6 44 77 0 5 5 000000 22222 4 3 6666 3 3 77 4 99 4 4 3 9999 4 4 4 66 00 4444444444444 4 222222222222 5 5 1 55 0 5 1 66 777 0 8 88 1 4 33 2 5 2 88888 33 444 2 55 888888 2 2 66666666666666666666666666666666666 444444 444 6 6666666666666666666666666666 3 99999999999 6 7777 666666 99999999999999999 2 33333 2 33 2 111111 2
lowQualScore : . . . .. . . . . .... . ...... . . . . . . . . ..... . ......... .. ........ . . ................. . .. ..................... . . . .... ... . . . . ... .. . . ..... . . .......................................................... ...... . ..... ... . ..... . ........... . . . . . . .. . ........ .. ... . .. ... . .... . .. .. ..... . ....... ... . ..... . . . . . .. .. . . . ...... ..... . . .... . . .. . .. . . . .... . . . .. .. ............. . ............ . . . .. . . . .. ... . . .. . . .. . . . ..... .. ... . .. ...... . . ................................... ...... ... . ............................ . ........... . .... ...... ................. . ..... . .. . ...... .
lowQualScore : 0 0 8 22 7 7 7 7 3333 4 444444 0 0 0 0 0 4 9 0 66666 4 222222222 11 44444444 0 5 11111111111111111 0 99 888888888888888888888 0 2 2 9999 999 7 4 4 9 777 11 4 4 99999 5 8 1111111111111111111111111111111111111111111111111111111111 333333 6 11111 222 2 77777 3 22222222222 1 4 3 6 6 0 55 0 99999999 99 666 0 99 666 7 8888 8 44 00 22222 4 8888888 888 8 22222 0 7 3 5 7 77 99 7 7 7 111111 99999 0 6 6666 6 6 44 0 55 0 0 9 4444 4 4 4 11 66 4444444444444 4 000000000000 7 7 4 99 0 0 0 11 111 1 9 66 1 8 99 9 7 9 11111 77 777 7 77 666666 7 9 99999999999999999999999999999999999 111111 888 7 3333333333333333333333333333 3 22222222222 7 1111 999999 55555555555555555 7 33333 7 77 7 333333 7
consensus : NNNNNNNNNNNNNNNNNNNNNNNNTTCCAAAGTCAATAGGCCTAAATGTTT-TG-TTATACCTCCACATTA-TG-TGGATATAAAT-G-ATACAAAAACAACAA----TTTTGAACTTTCTTCA-TAGT------AATGCATGT-A-TA-AT-CAATT-GTAATA-AAAAACAANT--A--CAGG-AATATCT------G--T--TTT---T----TTT-ACGTTT-------A--------TCAC-A--ATTTCGCC-GC----AGCCATA-A-CAA-TCAATTGTTCCTTCACTAT---ATTGACG---AGTCATA-CCAATTCA-CGGATAGTTAC-GAG--TTAC--T-CCGAATA-C---C-ACGAAT---TA--------------------TAT--CAT-GA--------TAGT----GA----CATC-AC---A-CTG-----GTC--CA-T-----TGAAAACA-T-G---A---TGTTGGACCGGGCGG-TCCAAC-A-TC-GAGTTTTCAAT-GGACCGGCA-GTCCG-GGCCGAACATCGGGATT-GTTGGT--C-TTTTTCT--TGTGTTGAAT-A-TA-TGA-TAGAGAA-AACATATAGG--GA-TT--ATAACAAGA---TA--TGACGTCGTGTTTTTA--TCTTGGCGTGA-CGTA-TAGGATATAAC-ATAAGTCCGNA--GCATGCGCC-ACAAA-CCTAGGA-C-AAACCTA-ATGTGGGACAAACCTA-GTTT-ATGATAGAACACTACAA-GA-TTGTCGATATCCA-TTAAAACAT-GTCT--GT-AATCTA-CAACGTCT----AGACG-G-AGTTT-G--ACATGTCATT--AC-------------TGAAC-ATTGC--AATACAAATCGTG-TT-TATACGCG-AAA-GTTT-CGCGTTNA--T--TCGCGAAAGTTT-CGCGTT--TATTCGCGGAAAGTTNCGCGT-TA-A-TN---CGC--GAA---AT-TTTCGCGTT-ATA-A----CGCG-AAA-GTT-ACGCG--T-TATT-CGCGAAA-G--TT---G--CGT--T--TATT-C-GCG-AAA-NT-TC-------G-------------CG-TA-----------A-TAAC----GC------AAA-----AT-------TAAT-TTTTTCT-----C-T--A-CGAAAATGA------GCTC-AATGGGCTTTC
Reference ( family-5944 ) : NNNNNNNNNNNNNNNNNNNNNNNNTTCCAAAGTCAATAGGCCTAAATGTTT-TG-TTATACCTCCACATTA-TG-TGGATATAAAT-G-ATACAAAAACAACAA----TTTTGAACTTTCTTCA-TAGT------AATGCATGT-A-TA-AT-CAATT-GTAATA-AAAAACAANT--A--CAGG-AATATCT------G--T--TTT---T----TTT-ATGTTT-------A--------TCAC-A--ATTTCACC-GC----AGCCATA-A-CAA-TCAATTGTTCCTTCACTAT---ATTGACG---AGTCATA-CCAATTCA-CGGATAGTTAC-GAG--TTAC--T-CCGAATA-C---C-ACGAAT---TA--------------------TAT--CAT-GA--------TAGT----GA----CATC-AC---A-CTG-----GTC--NA-T-----TGAAAACA-T-G---A---TGTTGGACCGGGCGG-TCCAAC-A-TC-GAGTTTTCAAT-GGACCGGCA-GTCCG-GGCCGAACATCGGGATT-GTTGGT--C-TTTTTCT--TGTGTTGAAT-A-TA-TGA-TAGAGAA-AACATATAGG--GA-TT--ATAACAAGA---TA--TGA-GTCGTGTTTTTA--TCTTGGCGTGA-CGTA-TAGGATATAAC-ATAAGTCCGNA--GCATGCGCC-ACAAA-CCTAGGA-C-AAACCTA-ATGTGGGACAAACCTA-GTTT-ATGATAGAACACTACAA-GA-TTGTCGATATCCA-TTAAAACAT-GTCT--GT-AATCTA-CAACGTCT----AGACG-G-AGTTT-G--ACATGTCATT--AC-------------TGAAC-ATTGC--AATACAAATCGTG-TT-TATACGCG-AAA-GTTT-CGCGTTNA--T--NCGCGAAAGTTT-CGCGTT--TATTCGCGGAAAGTTNCGCGT-TA-A-TN---CGC--GAA---AT-TTTCGCGTT-ATA-A----CGCG-AAA-GTT-ACGCG--T-TATT-CGCGAAA-G--TT---G--CGT--T--TATT-C-GCG-AAG-TT-TC-------G-------------CG-TA-----------A-TAAC----GC------AAA-----AT-------TAAT-TTTTTCT-----C-T--A-CGAAAATGA------GCTC-AATGGGCTTTC
gi|1 : TTTCAAAGTCAATAGGTCTAAATGTTT-TG-TTATACCG------TA-TG-TGGATATAAAT-GGATACAAAAACAACAA----TTTTGAACTTTCTTCAGTTGT------AATGCATGTCA-TA-AT-CAATT-GTAATT-AAAAACCATT--A--CAGG-AAAATCT------G--T--TTT---G----T---ATGTTT-------A--------G----A--AATTCACT-GC----AGC-ATA-A-CAA-TCAATTGTTCCTTCAC-AT---AT-GACG---AGCCATA-TCAA---A-CGGATAGTTAA-GAG--TTAG--T-CCGAATA-C---C-ACGAAT---TA--------------------TAT--CAT-GA--------TAAT----AA----CATC-AC---A-CTG-----GTCCATA-T-----TGAAAACA-CAG---AATGCGTTGG-CCGGACGG-TCCAAC-A-TC-GAGTTTTCAATGGGACCGGCA-G--CGAGGCGGAAC-TCGGGATT--TT-GT--C-TTTTTCT--TGTGTTGAAT---TAGTGATTAGAGAT-AACATATAGGATGA-----ATAACAA-A---TAATTG--GTCCTGTTTT----TCTT-GCGTGACCGTA-TAGGA-ATAAC-ATAAGTCCAAG--GCATGTG-C-ACAAA--CTAGGA-C-AAACTTA-ATGTGGGACAACCGGA-GTTTAATGATAGAA-AC-ACAA-GAGTTGTCGATATCCATTTAAAACAT-GTCT--GTGAATCTA-C-ACG-CTCGCAAGACG-GAAGTTT-GTAACATGTCATC--ACGTTCGACACGAAACGAGC-ATTGC--AATACAAATCGTGATT-TATACGCG--AC-GTTT-CGCGTTTACCT--TCGCGAAAGTTT-CGCGTT--TAATTGCAGCAAGTTACGCGT-TA-A-TT---CGC--GAA---GT-TTCCGCGTT----------CGCG-AAA-GTT--CGCG--T-AATT-CGCG-AA-G--TT---A--CG---C--TATT-CGGCA-AAG-TT-AC-------G-------------CG-AA-----------ATTAAC----GC------AAA-----AT-------TAAT-TTTTCCT-----C-T--A-CGAAAATGAAG----ACTC-AATGGGCTTTC
gi|10 : ggcagattctagcttgttttttctGCGTGA-CGTA-TAGGATATAAC-ATAAGTCCAAA--A-ATGTGCC-ACAAA-CCTA---------------TGTGGAACAAACATT-GTTT-ATGATAGAACACTACAA-GA-TTGTCGATATCCA-TTATAACAT-GTCT--GT-AATCTA-TAACGTCT----AGACG-G-AGTTT-G--ACATGTCATT--AC-------------TGAAC-ATTGC--AATACAAATCGTG-TT-TATACGCG-AAA-GTTA-CGCGTTTA--T--TCGCAAAAG-TT-CGCGT
gi|10 : --T-TATA-CGCGAAA-G--TTAC-G--CGT--T--TATT-C-GCA-AAA-GT-TC-------G-------------CG-TA-----------A-TAAC----GC------AAA-----TT-------TT-T-TTTTTCT-----C-T--A-CGAAAATGA------GCTC-AATGGGCTTTCaataacgcaaattttttttttctctacgaaaatgagctcaatgggctttcg
gi|11 : gcgtgacgtataggatataacataagtccaaaaatgtgccacaaacctatgtggaacaaacattgtttatgatagaacactacaagattgtcgatatccattataacatgtctgtaatctataacgtctagacggagtttgacatgtcattactgaacattgcaatacaaatcgtgtAACCTA-GTTT-ATGATAGAACACTACAA-GA-TTGTCGATATCCA-TTAAAACAT-GTCT--GT-AATCTA-CAATGTCT----AGACG-G-AGTTT-G--ACATGTCATT--AC-------------TGAAC-ATTGCAAAATATAAATg
gi|12 : TTCCAAAGTCAATAGGCCTAAACTTTT-TG-T-ATACCTCCACATTA-TG-TGGATATAAAT-G-ATACAAAAACAACAA----TTTTGAACTTTCTTCA-TAGT------ATTGCATGT-A-TT-AT-CAATT-GTAATG-AAAAACAATT--A--CAGG-GTTAT-T------AATT--TTT---T----TTT-ACTTTA-------A--------TCAC-A--ATTTCACCTGC----AGCCATA-A-ACA-TCAATTGTTCCTTCACTAT---nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntaacgcga
gi|13 : agaTTGCGTGT-AA-A------CGC--TTA---AT-TTTCGCGAT-ACA-A----CACG-AAA-ATA-ACGAG--TCTATT-CGTGTAA-ATTTT---G--CGT--TAATATT-C-GCG-GA--TT-TCTTAAAATGTATTTAGTTTTTTCG-TT-----------A-TAAC----ACGA----AAA-----ATGTTTCAATAGT-TTTTTTTTTCAGC-T--A-CAAAAATTATCATGTGTTC-AATGGGCTTTtg
gi|14 : TTTTGCGT-GA-G-AA---CGC--GGA---AT-TTTCG-------A-A----CGCG-AAA-GT---CGGGGTT-TATT-CGCGAAA-GCTTC---G--CAT--T--TATT-C-GCGTAAG-TT-TC-------G-------------CGTTAT----------A-TAAC----GC------GAACAATGAT-------T-AT-TTTTTAG-----C-T--A-TGAAAAGTC------GCTC-AATG
gi|15 : attaaaactgtttataaaacaagtaAAAATT--GCATCTA-C-TA---GGT--GAA---AT-TT-CGCGTC-ATA-A----CGCG-AA--------GC------------CGTAA-G----------CGT--T--TATT-T-GCG-A---------------G-------------CG-TACGATGATATATG-TAAC----AC------GAA-----A---------AATATTGTTATAG---C-T--AGCGAAAATTA------GCTCAAATGGGCTTTCatgattt
gi|16 : aaaaTGA--T--TCGTGTAAATTT-TGCGTTAATATTCGCGGA---TTTC---T-TA-AATG---TAT--TTA---GT-TTTTTCGTT-ATA-A----CACG-AAA-at
gi|17 : G-----GTC--CA-C-----TGGAAACA-T-G---A---TTATGGACCGGGTGG-TCCAAC-A-TC-GACTTTTTAAT-TTACCTGCA-GT------CCGAACATGGGGATT-GTTGGA--C-TTTTTaaatgtttcatagtttttttttcagcttacaaaaattatcattgtgttcaatgggctttcgc
gi|18 : aatcG-----ATC--CA-T-----TGAAT----T-C---A---TGTTGGACTGGGCGG-TCCAACAA-TC-AAGGTTTTAAT--GACC-ACA-GTCC----C--AACATCGGGATT-GCTGGA--CGCTTTTCT--TGTATCTAAT---TA-Tggttattccattatgtag
gi|19 : caac---A-CCG-----GTC--CA-T-----TGAAAA--------------GTTGGACCGGGCGG-TCTAAC-ACTC-GGGGTCT-AAC---ATTGAGA-TT------TCAAACATCGGGA----TTGGA--C-TTTTTCT--TGCATTCAGTGA-TA-Ta
gi|2 : aaTGTTTCTGATTATACCTC-ACATTAATGGTGGAAATAAATTG-ATACAGAAACAACAAATAATTTTGAACTTTCTTCAATAGTCAACGTAATGCA----A-TA-AT-CAATT-GTAATATAAAAAAAAAT-----CAGGGAATATCT------G--T--TTT---T----TTTTGTGTTT-------ACTTCTCAATCACCA--ATTTCGAC-GCTGCGAGCCATA-A-CAAATCAATTGT--CTTCCCCATCCTATTGACGTT-A-TCACATCCAATTCA-CGGATAGTTATAGAGGTTTACACT-CTGAATA-CAGCT-ACGAGT---TAAAT-----------------TATTACAC-GAGATTTAATTAGTTCATGAAATGCATCCAT---A-CTG-----GTC--AAAT-----TGAAAACACT-GGA-A---TGTTGAAC-GGGCGGGTCCAAC-A-TC-GTGTTTTCAAT-G--CCGGCATGTCCGTGGGCGAACATGAGGATTTATTGGTA-T-TTTTTCT--TGTGGTGAAT-A-TA-TGA--AGAGAA-GATATATAGGC-GA-TTTAATGACAAGA---T---TGA--TCGTGTTTTTA--TCTTGGCATGA-CGTA-TAGGA---AACCATAAGTCCGCATAGCATGCACC-ATAAAACCTAGGA-CCAAACC---GTACAGGGCAAACCTA-CTTT--TG---------------GA-TTGTCGATATCAA---AAAACAT-GTCCTGGT-AATCTAGCAAC-TCT----AGACG-G-AGTTTAG--AGATGTCATGA-AC-------------TGAAC-ATTGC--A---------GTG-TTATATACGCG-GAACGTTT-CGCGTTAA--TCCACACGAAATTTT-CGCCGT--TATTCGCAAAAAGTTAGCCGT-TAGA-TG---TGC--GAA---AC-TTT-GCGTA-ATA-ACAACCGCG-AGA-ag
gi|2 : GTGTTA-TATACGCGGAACGTTTCGCGT-TA-A-TC---CACACGAA---AT-TTTCGC-----------------------------CG--T-TATT-CGCAAAAAG--TT---AGCCGT--TA-GATG-T-GCG-AAA-CT-TT-------G-------------CG-TA-----------A-TAACAACCGCGAG---AAA-----AA-------TAAT-TTTTTTTGTT--C-T--A-CGAAAATGA------G-TT-AA-GGGCTTTaaaataattttttttgttctacgaaaatgagttaagggcttttcgt
gi|20 : tgtttctgattatacctcacattaatggtggaaataaattgatacagaaacaacaaataattttgaactttcttcaatagtcaacgtaatgcaataatcaattgtaatataaaaaaaaatcagggaatatctgtttttttttgtgtttacttctcaatcaccaatttcgacgctgcgagccataacaaatcaattgtcttccccatcctattgacgttatcacatccaattcacggatagttatagaggtttacactctgaatacagctacgagttaaattattacacgagatttaattagttcatgaaatgcatccatactggtcaaattgaaaacactggaatgttgaacgggcgggtccaacatcgtgttttcaatgccggcatgtccgtgggcgaacatgaggatttattggtattttttcttgtggtgaatatatgaagagaagatatataggcgatttaatgacaagattgatcgtgtttttatcttggcatgacgtataggaaaccataagtccgcatagcatgcaccataaaacctaggaccaaaccgtacagggcaaacctacttttggattgtcgatatcaaaaaacatgtcctggtaatctagcaactctagacggagtttagagatgtcatgaactgaacattgca-AAA-TTTT-CGCGTTTA--T--TTGCGAAAGTTT-TGCGTT--TAATCGCGG-AAGTCACGCGT-AT-A-TT---TGC--AAG---AA-TTACGCG-T-ATATC----CTCG-AAA-GTT-tcgt
gi|21 : tttattctcctGCGAAA-GATTT---G--TGTCAT--TAT----GCA-AAA-ATATC-------G-------------CT-TA-----------A-TTAC----GC------TAC-----AT-------T----TTTTTTT-----CAT--A-CAAAAATGA------ACTT-tc
gi|22 : tcatat--GGA---ATGTTTCGCGTT-ATA-A----CGCG-AAA-GTT-ATAC--------------------------G--CGT--T--TATT-C-ATGAAAG-GT-TC-------G-------------CG-CA-----------ATTAAC----GC------AAA-----Agaacatacata
gi|23 : acataattatattttaaatTC-AA---A-C-A-----GTC--CA-T-----TGAAAACA-T-G---A---TGTTGGACCAGGCGG-TCCAAC-A-TC-AAGTTCTCAAT-GGACTGGCA-GT------CCAAACATCTGGATT-GTTG
gi|24 : g----CGTC-AA---A-CTG-----GTC--CA-T-----GGAAAACA-T-G---------TTGGACCAGGCAG-TCCAAC-A-TT-GAGTTTTCAAT-GGACCAGCA-GT------CCGAACATCAGGATT-GTTG
gi|25 : GAAAGATTCGCAT-TA-A-TTGATCGT--GAA---AG-TCTTGCGTT-ACA-A----CGCG-A
gi|26 : gc--TC---G--CGT--T---ATTAC-GCG-AAA-CT-TT---------------------CG-TA-----------A-TAAC----GCGGA---AAA-----AA-------AAAA-TTTTAC------C-T--A-CGAAAATGA------TCTC-AATGGGCTTTtttttttcaactactaaaattagctaaataggttt
gi|28 : tAT---ATTGACG---AGTCATA-CCAATTCA-CGGATAGTTAC-GG----TAT--T-CCAAATA-C---C-ta
gi|29 : gctataATGC-A-TA-AT-CAATT-GTAATA-AAAAACAAAT--A--CAGG-AATATCT------G--T--TTT---ta
gi|3 : tCATTA-TG-TGGAACTAAAT-G-ATACAAAA-CAACAAATCATTTTGAACTTTCTTCA-TAGT------CACGTATGC-AATACATACAATTTGTAATA-AAAAA-AAAT-----CAGG-AATATCT------G--T--TTT---T----TTT-GTGTTTCTTGTTAA--------TCAC-ACAATTTCGAC-GCTGCTAGCCATACA-CAAATCAATTGTTTCT-CA-TCT---ATTGACGTTCA-TCAT--CCAATTCAACGGATAGTTATAGAGG-TTCC--TACTGAATA-CG--C-ACGAGT---TAATTATTACAGAGATTTAATTTAT--CAT-GA--------AATG----GG----CATCCAT---AACTG-----GTC--AAAT-----TGAAAACACT-GGATA---TGTTG-ACCGGGCGGGTCCAAC-A-TC-GTGTTTTCAAT-GGCACGGCT-G-CCG-GAGCGAACATGAGGATT-ATTGGTAAT-TGTTTCTTGTGTGTTGAAT-ACTA-TGAGTAG-GAA-GAGATATAGG--GATTT--ATGACAAGA---TA--TGA---CGTGTTTTTAAGTCTTGGCATGA--GTATTAGGG-AAACC-ATAAGTCCGCA--TGATGCACCAATAAA-CCTAGGACC-AAACCGACA---GGGACAAACCTATCTTT-AT----------------GA-TTGTCGATATCCA-AAAAAACATGGTCTG-GT-AATCTA-CAAC-TCT----AGACGAG-AGTTT-G--AGATGTCATTGAAC-------------TGAACGATTG---A---------GTG-TT-TA-ACGCG-GAACGTTT-CGCGTTAA--T--CCACGAAATTTT-CGCG-T--TATTCGCAAAAAGTTAAGCGT-TAGA-TG---TGC--G-A---AC-TTTAGCGTA-ATA-ACAC-CGCG-AGA-
gi|3 : GTGTT--TAA-CGCGGAACGTTTCGCGT-TA-A-TC---CAC--GAA---AT-TTTCGCGTT-ATT------CGCA-AAAAGTT-AAGCG--T-TA------GA--------------TGT------------GCG-AAC-TT-TA-------G-------------CG-TA-----------A-TAAC----ACCGCGAGAAA-----AC-------TAAT-TTTTTTTGTT--C-T--A-CGAAAATGA------GTTC-AATGGGCTTTaaactaattttttttgttctacgaaaatgagttcaatgggcttt
gi|30 : cattatgtggaactaaatgatacaaaacaacaaatcattttgaactttcttcatagtcacgtatgcaatacatacaatttgtaataaaaaaaaatcaggaatatctgttttttttgtgtttcttgttaatcacacaatttcgacgctgctagccatacacaaatcaattgtttctcatctattgacgttcatcatccaattcaacggatagttatagaggttcctactgaatacgcacgagttaattattacagagatttaatttatcatgaaatgggcatccataactggtcaaattgaaaacactggatatgttgaccgggcgggtccaacatcgtgttttcaatggcacggctgccggagcgaacatgaggattattggtaattgtttcttgtgtgttgaatactatgagtaggaagagatatagggatttatgacaagatatgacgtgtttttaagtcttggcatgagtattagggaaaccataagtccgcatgatgcaccaataaacctaggaccaaaccgacagggacaaacctatctttatgattgtcgatatccaaaaaaacatggtctggtaatctacaactctagacgagagtttgagatgtcattgaactgaacgattga------AAA-----ATA------TATT-TTTCTCT-----C-T--A-CGAAAATGA------GCTC-AATGGGCTTTC
gi|31 : G-----ATC--CA-T-----TGAAT----T-C---A---TGTTGGACTGGGCGG-TCCAAC-A-Tg
gi|32 : gtcaacT-TTTTTCT-----C-T--A-CGAAAATGA------GCTC-AATGGGCTTTC
gi|33 : tatattT-TTTTTCT-----C-T--A-CGAAAATGA------GCTC-AATGGACTTTCg
gi|34 : attt-------TATT-TTTTTCT-----C-T--A-CTAAAATGA------GCTC-AATGGGCTTTCg
gi|4 : aATTA-TG-TGGATATAAAT-G-ATACAAAAACAACAA----TTTTGAACTTTCTTCA-TAGT------ATTGCATGT-A-TA-AT-CAATT-GTAATA-AAAAACAACTA-A--CAGG-AATATCTGGGGGGG--T--TTT---T----TTTAATGTTTTACTTTAA--------TCAC-A--ATTT---------------------CAA-TCAATTGTTCCTTCAC--T---ATTGACG---AGTCATA-CCAATTCA-CGGATAGTAAC-GAG--ATAC--T-CCGAATACC---C-ACTAAT---T---------------------------AT-GA--------TAG-----AA----CACG-GC---A--TGATT--GTC--GA-TATCCATTAAAACA-T-g
gi|4 : agagttgacattatatcagattagcacgttcgttacgcgggaagattagaacacgaatattgaatctttcgtgcattcgattaagcgacatggggtacacaattgcaagtgttaaataaaatatgaaattgtcaaaacgagtcgaacattggcctagtgtctcgcaagtgtactcctcattttagcaggccgaaggcattccaacattttggttcgaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTT-ATGATAGAACACGGCAT-GA-TTGTCGATATCCA-TTAAAACAT-ATCT--GT-AATCTA-TAACGTCT----AGACG-G-AGTTT-G--ACATGTCATT--AC-------------TGAAC-ATTGCAAAATATAAA------------ACGCG-AAA-GTTT-CGCGTTTA--T--TCGCG-AAGTTTACGCGTT--atctgtaatctataacgtctagacggagtttgacatgtcattactgaacattgcaaaatataaaacgcgaaagtttcgcgtttattcgcgaagtttacgcgttat
gi|5 : agagttgacattatatcagattagcacgttcgttacgcgggaagattagaacacgaatattgaatctttcgtgcattcgattaagcgacatggggtacacaattgcaagtgttaaataaaatatgaaattgtcaaaacgagtcgaacattggcctagtgtctcgcaagtgtactcctcattttagcaggccgaaggcattccaacattttggttcgaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnattatgtggatataaatgatacaaaaacaacaattttgaactttcttcatagtattgcatgtataatcaattgtaataaaaaacaactaacaggaatatctgggggggttttttttaatgttttactttaatcacaatttcaatcaattgttccttcactattgacgagtcataccaattcacggatagtaacgagatactccgaatacccactaaAGTCAATAGGCCTAAATGTTT-TG-TTATACCTCCACATTA-TG-TGGATATAAAT-G-ATACAGAAACAACAA----TTTTGAACTT-CTTCA-TGGT------AATGCATGT-A-TA-AT-CAATT-GTAATA-AAAAAAAACT--ATACAGG-AATTTCT------G--T--TTT---TATGTTTT-ACTTTA-------A--------TCAC-A--ATTTCA---------------------A-TCA-TTGTTCCT-CACTAT-----TGATG---AGTCATA-CCAATTCA-CGGATAGCTAC-AAG--TTAC--T-ACAAATA-C---C-A--ACC---TA--------------------GTT--TAT-GA--------TAG-----AA----CACT-ACAAGA-TTGTCGATATC--CA-T-----T-AAAACA-T-G---at
gi|5 : agaattgacattatatcagattagcacgttagttacacgggtagattagagaatgaatattgaatctttcatgcattcgattaagcgacacgaggtacacgattgcaagtgttgtaaatacatgtaaaaatgtgaaattgtcgaaacgagtcgaacattggcgtagtgtctcgcaagtgtactcctcattttagcaggtcgaaggcattccaacatttggttcgagggtctatcatagcccatgttgccgagacttcACCAACCTA-GTTT-ATGATAGAACACTACAA-GA-TTGTCGATATCCA-TTAAAACAT-GTCT--GT-AATCTA-CAATGTCT----AGACG-G-AGTTT-G--ACATGTCATT--AC-------------TGAAC-ATTGC--AAtctgtaatctacaatgtctagacggagtttgacatgtcattactgaacattgcaaaat
gi|6 : agaattgacattatatcagattagcacgttagttacacgggtagattagagaatgaatattgaatctttcatgcattcgattaagcgacacgaggtacacgattgcaagtgttgtaaatacatgtaaaaatgtgaaattgtcgaaacgagtcgaacattggcgtagtgtctcgcaagtgtactcctcattttagcaggtcgaaggcattccaacatttggttcgagggtctatcatagcccatgttgccgagacttcagtcaataggcctaaatgttttgttatacctccacattatgtggatataaatgatacagaaacaacaattttgaacttcttcatggtaatgcatgtataatcaattgtaataaaaaaaaactatacaggaatttctgtttttatgttttactttaatcacaatttcaatcattgttcctcactattgatgagtcataccaattcacggatagctacaagttactacaaatT---ATTGACG---AGTCATA-CCAATTCA-CGGATAGTTAC-GG----TAT--T-CCAAATA-C---CTACGAAT---AA---------------------AT--CATTGA---------AAT----GA----CATC-AT---A-CTG-----GTC---A-T-----TGAAA-CA-C-G---A---TGTTG-ACTGGGCGG-TCCAAC-A-TCAGAGTTTTCAAT-GGACCGGCA-GTCCA-AGGCGAACATCGGGATT-ATCGGT--C-TTTATCT--TGTGTTAAAT---TA-T-A-TAGGAAT-AACATATAGG--GA-T---ATAAAAAAAAAATA--TGACGTCGTGTTT--A--TCTTG-CGTGA-CGCAATAG-ATATAAC-ATAAGTCAGCA--GCATGTGCC-ACAAA-CCTA------AAATCTT-ATGTGGGACAAACCTA-GTTT-ATGATAGAAC--TACAAAGA-TTGTCGATATCCA-TTAAAACAT-GTCT--GT-AATCTA-CAACTTCT----AGACG-G-AGTTT-G--ACATGTCATT--AC-------------TGAAC-ATTGC--AATACAAATCGTG-TT-TATACGCGCAAA-GTTTACGCGTTAA--T--ACGCAAAAGTTTACGCGTT--AATTCGC-GAAAGTTT-GCG--TA-A-TA----AC--GAAAATAT-TTTaat
gi|6 : TCGTGTTTATA------CGCGCAAA-GTTTACGCG--T-TAATACGCAAAA-G--TTTACG--CGT--T--AATT-C-GCG-AAA-GT-TT-------G-------------CG-TA-----------A-TAAC----G-------AAA-----AT--------ATT-TTTTTTT-----C-TTAA-CGAAAATGA------GCTC-AATGGGCTTTCtttttcttaacgaaaatgagctcaatgggctttcg
gi|7 : tattgacgagtcataccaattcacggatagttacggtattccaaatacctacgaataaatcattgaaatgacatcatactggtcattgaaacacgatgttgactgggcggtccaacatcagagttttcaatggaccggcagtccaaggcgaacatcgggattatcggtctttatcttgtgttaaattatataggaataacatatagggatataaaaaaaaaatatgacgtcgtgtttatcttgcgtgacgcaatagatataacataagtcagcagcatgtgccacaaacctaaaatcttatgtgggacaaacctagtttatgatagaactacaaagattgtcgatatccattaaaacatgtctgtaatctacaacttctagacggagtttgacatgtcattactgaacattgcaatacaaaAGTCAATAGGCTTAAATGTTT-TG-TTATACCTTCACATTA-TG-TGGATATAAAT-G-ATACAAAAACAACAA----TTTTGAACTTTCTCCA-TGGT------AATGCATGT-A-TA-AT-CAATT-GTAATA-AAAA--AACTACA--CAGG-AATATCT------G--TAATTTATGT----TTT-ACTTTG-------A--------TCAC-A--ATTT---------------------CAA-TCAATTGTTCCTTCGC--T---ATTGATG---AGTCATA-CCAATTCA-GGAATAGTTAC-AAG--TTAC--T-CCGAATA-C---C-A--ACC---TA--------------------GTT--TAT-GA--------TAG-----AA----CACT-AC---A-g
gi|7 : atgaatattgaatctttcgtgcattcgatttaaaagcgacacagggtacacgattgctagtgttgtaaataaaatgtgaaattatcgagacgagtcgaacattggcctagtgtctcgcaagtgtactcctcattttagcaggtcgaaggcattccaacattttggttcgaggttctatcatagcgcatgttgcccgagacttcACCAACCTA-GTTT-ATGATAGAACACTACAA-GG-TTGTCGaggttgtcg
gi|8 : atgaatattgaatctttcgtgcattcgatttaaaagcgacacagggtacacgattgctagtgttgtaaataaaatgtgaaattatcgagacgagtcgaacattggcctagtgtctcgcaagtgtactcctcattttagcaggtcgaaggcattccaacattttggttcgaggttctatcatagcgcatgttgcccgagacttcagtcaataggcttaaatgttttgttataccttcacattatgtggatataaatgatacaaaaacaacaattttgaactttctccatggtaatgcatgtataatcaattgtaataaaaaaactacacaggaatatctgtaatttatgttttactttgatcacaatttcaatcaattgttccttcgctattgatgagtcataccaattcaggaatagttacaagttactccgaat-AAAAACAATT--A--CAGG-ATTATCT------------TTT---T----TTT-ACTTTT-------A--------TCAC-A--ATTTCACCAGC----AGCCATA-AACAACTCGATTGTTCCTTCACTAT-----TGATG---A-------CCAATTCC-AGGATAGTTAC-GAG--TTAT--T-CCGAATA-C---CCACGAATAGACA--------------------T-T--CAT-GA---------AAT----GA----CATC-AT---A-CTG-----GTC--CA-T-----TGAAAACA-C-G---A---TGTTG-ACTGGGCGT-TCCAAC-A-TC-GAGTTTTCAAT-GGACCGGCA-GTCCA-AGGCGAACATCGGGATT-ATTGGT--C-TTTATCT--TGTGTTGAA--G-TA-T-A-TAGAGAATAACATACAGG--GA--T--ATAACAAAA---TA--TGACGTCGTG--TTTA--TCTT-GCGTGA-CGTA-TAGGATATAGC-ATAAGTCC-AA--ACATGTGCT-ACAGA-CCTAAGA-C-AAATCT--ATGTGGGACAAACCTA-GTTT-ATGATAGAACACTACAA-G----------------TTAAAATAT-GTCT--GT-GATCTA-
gi|9 : --GCATGCACC-ATAAA-CCTAGGA-C-AAACCTA--CATGGGACAAACCTA-CTTT-ATGAT-----------------TGTCGATATCCA---AAAACAT-GTCT--GT-AATCTA-CAACGTCT----AGACG-G-AGTTT-G--AGATGTCATT--AC-------------TGAAC-ATTGC--AA--------GTG-TT-TATACGCG-AAC-GTTT-CGCGTTAA--T--CCACGAAATTTT-CGCGTT--TATTCGC-AAAAGTTACGCGT-TA-A-TT---TGC--GAA---AC-TTTCGCGTA-ATA-A----CGCG-AAA-
gi|9 : GTGTT--TATACGCG-AACGTTTCGCGT-TA-A-TC---CAC--GAA---AT-TTTCGCGTTTATT------CGCA-AAA-GTT-ACGCG--T-TA-------------------------------ATT-T-GCG-AAACTT-TC-------G-------------CG-TA-----------A-TAAC----GCG-----AAA-----AA-------TAAT-TTTTTTTGT---C-T--A-CGAAAATGA------GTTC-AATGGGCTTTCaataattttttttgtctacgaaaatgagttcaatgggctttc
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|27 ): AACTGAGAATAGACTGAAGTTGAAATTTTGAATCTTAACTACTGACCTTTCAACTACA